Query psy9632
Match_columns 83
No_of_seqs 112 out of 1030
Neff 4.1
Searched_HMMs 29240
Date Sat Aug 17 00:42:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dmp_A Uracil phosphoribosyltr 99.9 6.9E-24 2.4E-28 155.5 3.8 53 1-53 164-216 (217)
2 1xtt_A Probable uracil phospho 99.9 1.1E-22 3.9E-27 148.8 3.0 51 1-51 166-216 (216)
3 1v9s_A Uracil phosphoribosyltr 99.8 5.5E-22 1.9E-26 144.3 4.9 53 1-53 156-208 (208)
4 2ehj_A Uracil phosphoribosyltr 99.8 5.7E-22 2E-26 144.2 4.2 53 1-53 156-208 (208)
5 1bd3_D Uprtase, uracil phospho 99.8 9E-22 3.1E-26 146.4 4.9 53 1-53 191-243 (243)
6 1o5o_A Uracil phosphoribosyltr 99.8 6.5E-22 2.2E-26 145.3 4.0 53 1-53 169-221 (221)
7 1i5e_A Uracil phosphoribosyltr 99.8 1.4E-19 4.7E-24 130.2 4.1 52 2-53 158-209 (209)
8 2e55_A Uracil phosphoribosyltr 99.8 3E-19 1E-23 129.8 5.2 53 1-53 154-206 (208)
9 3pid_A UDP-glucose 6-dehydroge 68.5 1.5 5E-05 34.4 0.8 8 67-74 285-292 (432)
10 3n3m_A Orotidine 5'-phosphate 46.6 24 0.00082 27.1 4.3 27 7-47 264-290 (342)
11 3m95_A Autophagy related prote 45.3 31 0.001 23.0 4.2 36 10-45 25-65 (125)
12 2fds_A Orotidine-monophosphate 44.3 21 0.00072 27.4 3.6 15 36-50 281-295 (352)
13 2r2q_A Gamma-aminobutyric acid 42.9 37 0.0013 21.7 4.2 33 11-43 17-54 (110)
14 4hoy_A PTH, peptidyl-tRNA hydr 40.8 9.9 0.00034 27.0 1.3 19 38-56 6-24 (193)
15 3h9d_A ATG8, microtubule-assoc 40.7 40 0.0014 22.1 4.2 37 10-46 20-61 (119)
16 2zjd_A Microtubule-associated 37.6 48 0.0016 22.1 4.2 31 11-41 25-61 (130)
17 3rui_B Autophagy-related prote 33.4 61 0.0021 21.2 4.1 36 10-45 19-59 (118)
18 2f4n_A Hypothetical protein MJ 31.8 31 0.0011 25.8 2.8 24 11-35 67-90 (273)
19 3r89_A Orotidine 5'-phosphate 26.0 80 0.0027 23.5 4.1 31 4-48 200-233 (290)
20 2aee_A OPRT, oprtase, orotate 25.3 2.6 8.9E-05 29.0 -3.9 34 7-40 158-193 (211)
21 3mw8_A Uroporphyrinogen-III sy 24.6 78 0.0027 21.3 3.6 22 4-25 55-80 (240)
22 1eo6_A GATE-16, golgi-associat 23.7 1.2E+02 0.0041 19.5 4.2 32 11-42 18-54 (117)
23 3ij6_A Uncharacterized metal-d 23.6 24 0.00083 25.3 0.9 18 12-29 191-208 (312)
24 4inf_A Metal-dependent hydrola 23.5 32 0.0011 25.8 1.5 17 12-28 248-264 (373)
25 3evi_A Phosducin-like protein 22.2 71 0.0024 19.8 2.8 21 11-31 45-65 (118)
26 4eyb_A Beta-lactamase NDM-1; m 21.4 76 0.0026 21.8 3.1 26 9-48 231-256 (270)
27 3nur_A Amidohydrolase; TIM bar 21.4 29 0.001 25.7 0.9 16 13-28 239-254 (357)
28 2qsx_A Putative transcriptiona 21.4 53 0.0018 20.8 2.1 22 9-30 36-57 (218)
29 2ql3_A Probable transcriptiona 21.2 65 0.0022 19.7 2.4 20 8-27 21-40 (209)
30 1s12_A Hypothetical protein TM 20.8 56 0.0019 20.2 2.0 15 9-23 72-87 (94)
31 3ojo_A CAP5O; rossmann fold, c 20.7 27 0.00092 27.1 0.6 8 67-74 265-272 (431)
32 3hhf_B Transcriptional regulat 20.5 70 0.0024 19.4 2.4 19 8-26 23-41 (213)
33 1pv8_A Delta-aminolevulinic ac 20.3 76 0.0026 24.7 3.1 23 8-30 102-125 (330)
34 1h7n_A 5-aminolaevulinic acid 20.2 77 0.0026 24.7 3.1 23 8-30 113-136 (342)
35 1l6s_A Porphobilinogen synthas 20.1 79 0.0027 24.5 3.1 23 8-30 99-122 (323)
36 4euy_A Uncharacterized protein 20.0 1.1E+02 0.0039 17.1 3.2 22 10-31 39-60 (105)
No 1
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=99.88 E-value=6.9e-24 Score=155.51 Aligned_cols=53 Identities=30% Similarity=0.700 Sum_probs=49.7
Q ss_pred CeeeeeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeEecCCCCccccccCCC
Q psy9632 1 MTTPAITISGIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53 (83)
Q Consensus 1 ~lSliaS~~Gi~~v~~~fP~v~I~ta~ID~~Lde~~yIvPGlGD~GDR~fgt~ 53 (83)
++++++|++|++++.++||+++||||+||++||+++||+|||||||||||||+
T Consensus 164 ~~~~vaa~egl~~l~~~~P~v~i~ta~iD~~Lne~~yIvPGlGDaGDR~fgt~ 216 (217)
T 3dmp_A 164 FLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDDHAYIVPGLGDAGDRLFGTK 216 (217)
T ss_dssp EECSEECHHHHHHHHHHCTTCEEEESEECCEECTTSCEESSCSCHHHHHHC--
T ss_pred EEEEEeCHHHHHHHHHHCCCCEEEEEEecCCcCCCCCccCCCCCHHHhhcCCC
Confidence 46889999999999999999999999999999999999999999999999986
No 2
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=99.85 E-value=1.1e-22 Score=148.75 Aligned_cols=51 Identities=35% Similarity=0.727 Sum_probs=49.5
Q ss_pred CeeeeeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeEecCCCCccccccC
Q psy9632 1 MTTPAITISGIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFG 51 (83)
Q Consensus 1 ~lSliaS~~Gi~~v~~~fP~v~I~ta~ID~~Lde~~yIvPGlGD~GDR~fg 51 (83)
++++++|++|++++.++||+++|||++||++||+++||+||||||||||||
T Consensus 166 ~~~~vaa~~gl~~l~~~~P~v~I~ta~iD~~Lne~~yIvPGlGDaGDR~fg 216 (216)
T 1xtt_A 166 IVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 216 (216)
T ss_dssp EECSEEEHHHHHHHHHHCTTSEEEESEEESEECTTSCEESSCSCHHHHHHC
T ss_pred EEEEecCHHHHHHHHHHCCCcEEEEEEecCCcCCCCCccCCCCChHhhccC
Confidence 468899999999999999999999999999999999999999999999997
No 3
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1
Probab=99.85 E-value=5.5e-22 Score=144.28 Aligned_cols=53 Identities=32% Similarity=0.705 Sum_probs=50.9
Q ss_pred CeeeeeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeEecCCCCccccccCCC
Q psy9632 1 MTTPAITISGIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53 (83)
Q Consensus 1 ~lSliaS~~Gi~~v~~~fP~v~I~ta~ID~~Lde~~yIvPGlGD~GDR~fgt~ 53 (83)
+++++++++|++++.++||+++|||++||++||+++||+|||||||||||||+
T Consensus 156 ~~~lv~~~~g~~~l~~~~p~v~I~t~~iD~~lne~~yIvPGlGDaGDR~fgt~ 208 (208)
T 1v9s_A 156 LMAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208 (208)
T ss_dssp EEEEEECHHHHHHHHHHCTTCEEEEEEECSEECTTSCEESSCSCHHHHHHTCC
T ss_pred EEEEEeCHHHHHHHHHHCCCcEEEEEeecCCCCCCceecCCCCcHHHhccCCC
Confidence 36889999999999999999999999999999999999999999999999984
No 4
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=99.84 E-value=5.7e-22 Score=144.19 Aligned_cols=53 Identities=36% Similarity=0.706 Sum_probs=50.9
Q ss_pred CeeeeeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeEecCCCCccccccCCC
Q psy9632 1 MTTPAITISGIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53 (83)
Q Consensus 1 ~lSliaS~~Gi~~v~~~fP~v~I~ta~ID~~Lde~~yIvPGlGD~GDR~fgt~ 53 (83)
+++++++++|++++.++||+++|||++||++||+++||+|||||||||||||+
T Consensus 156 ~~~lv~~p~g~~~l~~~~p~v~I~t~~iD~~lne~~yIvPGlGDaGDR~fgt~ 208 (208)
T 2ehj_A 156 VLVLVAAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK 208 (208)
T ss_dssp EEEEEECHHHHHHHHHHCTTSEEEESCBCSEECTTSCEESCCSCHHHHHHTCC
T ss_pred EEEEEeCHHHHHHHHHHCCCcEEEEEecCCCCCCCceecCCCCcHHHhhcCCC
Confidence 36889999999999999999999999999999999999999999999999984
No 5
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=99.84 E-value=9e-22 Score=146.44 Aligned_cols=53 Identities=43% Similarity=0.863 Sum_probs=51.0
Q ss_pred CeeeeeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeEecCCCCccccccCCC
Q psy9632 1 MTTPAITISGIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53 (83)
Q Consensus 1 ~lSliaS~~Gi~~v~~~fP~v~I~ta~ID~~Lde~~yIvPGlGD~GDR~fgt~ 53 (83)
++++|++++|++++.++||+++|||++||++||+++||+|||||||||||||.
T Consensus 191 ~~~lvaap~g~~~l~~~~p~v~I~ta~ID~~Lne~~yIvPGlGDaGDR~fGt~ 243 (243)
T 1bd3_D 191 FVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGTM 243 (243)
T ss_dssp EEEEEECHHHHHHHHHHCTTSEEEEEEECSEECTTCCEESCCSCHHHHHHTCC
T ss_pred EEEEEeCHHHHHHHHHHCCCCEEEEEEecCCcCCCceecCCCCcHHHhhcCCC
Confidence 46889999999999999999999999999999999999999999999999984
No 6
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=99.84 E-value=6.5e-22 Score=145.33 Aligned_cols=53 Identities=32% Similarity=0.661 Sum_probs=50.8
Q ss_pred CeeeeeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeEecCCCCccccccCCC
Q psy9632 1 MTTPAITISGIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53 (83)
Q Consensus 1 ~lSliaS~~Gi~~v~~~fP~v~I~ta~ID~~Lde~~yIvPGlGD~GDR~fgt~ 53 (83)
+++++++++|++++.++||+++|||++||++||+++||+|||||||||||||+
T Consensus 169 ~~~lv~~~~g~~~l~~~~p~v~I~t~~ID~~Lne~~yIvPGlGDaGDR~fGt~ 221 (221)
T 1o5o_A 169 LVALIAAPEGVEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRTK 221 (221)
T ss_dssp EECSEECHHHHHHHHHHCTTCEEEESEECSEECTTSCEESSCSCHHHHHHTCC
T ss_pred EEEEEeCHHHHHHHHHHCCCcEEEEEeccCCCCCCceecCCCCcHHHhccCCC
Confidence 36789999999999999999999999999999999999999999999999984
No 7
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=99.77 E-value=1.4e-19 Score=130.20 Aligned_cols=52 Identities=35% Similarity=0.706 Sum_probs=50.2
Q ss_pred eeeeeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeEecCCCCccccccCCC
Q psy9632 2 TTPAITISGIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53 (83)
Q Consensus 2 lSliaS~~Gi~~v~~~fP~v~I~ta~ID~~Lde~~yIvPGlGD~GDR~fgt~ 53 (83)
++++++++|++++.++||++.|||++||++||+++||+|||||||||+|||+
T Consensus 158 ~~lv~~~~g~~~l~~~~p~~~I~t~~id~~l~~~~~i~Pglgdagdr~fgt~ 209 (209)
T 1i5e_A 158 MCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK 209 (209)
T ss_dssp ECSEECHHHHHHHHHHCTTCEEEESEECCEECTTCCEESSCSCHHHHHHSCC
T ss_pred EEEEECHHHHHHHHHhCcCcEEEEEEeCCCCCCCceEccCCchHHHHhcCCC
Confidence 5789999999999999999999999999999999999999999999999984
No 8
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus}
Probab=99.76 E-value=3e-19 Score=129.83 Aligned_cols=53 Identities=30% Similarity=0.619 Sum_probs=51.1
Q ss_pred CeeeeeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeEecCCCCccccccCCC
Q psy9632 1 MTTPAITISGIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53 (83)
Q Consensus 1 ~lSliaS~~Gi~~v~~~fP~v~I~ta~ID~~Lde~~yIvPGlGD~GDR~fgt~ 53 (83)
+++++++++|++++.++||+++|||++||++||+++||+|||||||||+|||.
T Consensus 154 ~~~lv~~~~g~~~l~~~~p~v~I~t~~iD~~l~e~~~I~PglgdagdR~fgt~ 206 (208)
T 2e55_A 154 SVHAIAAPEGLKRIEEKFKEVEIFVGNVDERLNDKGYIIPGLGDIGDRLYAVS 206 (208)
T ss_dssp EEEEEECHHHHHHHHHHCTTSEEEEEEECSEECTTSCEESSCSSHHHHHHSCC
T ss_pred EEEEEECHHHHHHHHHHCCCcEEEEEeecCCCCCCceeccCccHHHHHhcCCC
Confidence 36789999999999999999999999999999999999999999999999996
No 9
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=68.52 E-value=1.5 Score=34.43 Aligned_cols=8 Identities=63% Similarity=1.452 Sum_probs=6.9
Q ss_pred cCcccccc
Q psy9632 67 AGGSCLPR 74 (83)
Q Consensus 67 ~~~~~~~~ 74 (83)
+||+|+|.
T Consensus 285 ~GG~C~pk 292 (432)
T 3pid_A 285 YGGYCLPK 292 (432)
T ss_dssp CCTTTHHH
T ss_pred Ccccchhh
Confidence 89999985
No 10
>3n3m_A Orotidine 5'-phosphate decarboxylase; P. falciparum, 5'-monophosphate decarboxylase, 6- UMP, lyase; HET: PGE NUP; 1.47A {Plasmodium falciparum} SCOP: c.1.2.3 PDB: 2qaf_A* 3bar_A* 2q8z_A* 3mwa_A* 3n2m_A* 3bpw_A* 3n34_A* 3s9y_A* 2f84_A 2q8l_A 2za1_A* 2za2_A 2za3_A* 2zcg_A 3vi2_A*
Probab=46.61 E-value=24 Score=27.13 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=18.1
Q ss_pred CHHHHHHHHHhCCCcEEEEEeecCCCCCCCeEecCCCCccc
Q psy9632 7 TISGIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGD 47 (83)
Q Consensus 7 S~~Gi~~v~~~fP~v~I~ta~ID~~Lde~~yIvPGlGD~GD 47 (83)
|++=+..+.+.+|+..+ +.||+|..|+
T Consensus 264 sp~e~~~iR~~~p~~~i--------------LtPGIGAQgg 290 (342)
T 3n3m_A 264 SYDEMNYIRTYFPNCYI--------------LSPGIGAQNG 290 (342)
T ss_dssp CHHHHHHHHHHSTTCCE--------------EECCSSTTCC
T ss_pred CHHHHHHHHHhCCCCeE--------------EeCCCCcCCC
Confidence 66666666666665444 7899987664
No 11
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=45.32 E-value=31 Score=23.02 Aligned_cols=36 Identities=14% Similarity=0.348 Sum_probs=26.5
Q ss_pred HHHHHHHhCCC-cEEEEEeec----CCCCCCCeEecCCCCc
Q psy9632 10 GIHSIAYAFPN-VKIVTSAVD----PEINENFYVIPGIGNF 45 (83)
Q Consensus 10 Gi~~v~~~fP~-v~I~ta~ID----~~Lde~~yIvPGlGD~ 45 (83)
=.+++.++||+ |-|++=... |.|+.+.|++|.==-+
T Consensus 25 e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv 65 (125)
T 3m95_A 25 EGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTV 65 (125)
T ss_dssp HHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBH
T ss_pred HHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEe
Confidence 36788999999 666665544 4788999999974333
No 12
>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural genomics, structural genomics consortium, SGC, unknown function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB: 2aqw_A
Probab=44.32 E-value=21 Score=27.44 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=6.9
Q ss_pred CeEecCCCCcccccc
Q psy9632 36 FYVIPGIGNFGDRYF 50 (83)
Q Consensus 36 ~yIvPGlGD~GDR~f 50 (83)
..+.||+|+.|+...
T Consensus 281 ~iLtPGIGaqgGdq~ 295 (352)
T 2fds_A 281 YILSPGIGAQNGDLY 295 (352)
T ss_dssp CEEECCC-----CHH
T ss_pred EEEcCccccccCcHH
Confidence 348999999875543
No 13
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=42.86 E-value=37 Score=21.65 Aligned_cols=33 Identities=18% Similarity=0.466 Sum_probs=25.9
Q ss_pred HHHHHHhCCC-cEEEEEeec----CCCCCCCeEecCCC
Q psy9632 11 IHSIAYAFPN-VKIVTSAVD----PEINENFYVIPGIG 43 (83)
Q Consensus 11 i~~v~~~fP~-v~I~ta~ID----~~Lde~~yIvPGlG 43 (83)
.+++.++||+ |-|++=... |.|+.+.|++|.=-
T Consensus 17 ~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~ 54 (110)
T 2r2q_A 17 GEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDL 54 (110)
T ss_dssp HHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTC
T ss_pred HHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCC
Confidence 5788899998 777766664 67888999999833
No 14
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=40.84 E-value=9.9 Score=27.00 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=15.8
Q ss_pred EecCCCCccccccCCCCCc
Q psy9632 38 VIPGIGNFGDRYFGTEPTI 56 (83)
Q Consensus 38 IvPGlGD~GDR~fgt~~~~ 56 (83)
++=|||+.|.+|-+|+++.
T Consensus 6 LIVGLGNPG~~Y~~TRHNi 24 (193)
T 4hoy_A 6 LIVGLGNPGSEYAQTRHNA 24 (193)
T ss_dssp EEEECCCCSTTTTTBGGGH
T ss_pred EEEEcCCCchhhCcCcccH
Confidence 4449999999999998764
No 15
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=40.69 E-value=40 Score=22.14 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=27.0
Q ss_pred HHHHHHHhCCC-cEEEEEeec----CCCCCCCeEecCCCCcc
Q psy9632 10 GIHSIAYAFPN-VKIVTSAVD----PEINENFYVIPGIGNFG 46 (83)
Q Consensus 10 Gi~~v~~~fP~-v~I~ta~ID----~~Lde~~yIvPGlGD~G 46 (83)
=.+++.++||+ |-|++=... |.|+.+.|++|.==-++
T Consensus 20 e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~ 61 (119)
T 3h9d_A 20 DAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVG 61 (119)
T ss_dssp HHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHH
T ss_pred HHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHH
Confidence 36788999999 666665544 46889999999744433
No 16
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=37.57 E-value=48 Score=22.12 Aligned_cols=31 Identities=13% Similarity=0.426 Sum_probs=24.6
Q ss_pred HHHHHHhCCC-cEEEEEee-----cCCCCCCCeEecC
Q psy9632 11 IHSIAYAFPN-VKIVTSAV-----DPEINENFYVIPG 41 (83)
Q Consensus 11 i~~v~~~fP~-v~I~ta~I-----D~~Lde~~yIvPG 41 (83)
.+++.++||+ |-|++=.. =|.|+.+.|++|.
T Consensus 25 ~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~ 61 (130)
T 2zjd_A 25 VRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPD 61 (130)
T ss_dssp HHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEET
T ss_pred HHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCC
Confidence 5788999998 77776333 3789999999997
No 17
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=33.36 E-value=61 Score=21.16 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=25.6
Q ss_pred HHHHHHHhCCC-cEEEEEeec----CCCCCCCeEecCCCCc
Q psy9632 10 GIHSIAYAFPN-VKIVTSAVD----PEINENFYVIPGIGNF 45 (83)
Q Consensus 10 Gi~~v~~~fP~-v~I~ta~ID----~~Lde~~yIvPGlGD~ 45 (83)
=.+++.++||+ |-|++=... |.|+.+.|++|.==-+
T Consensus 19 e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv 59 (118)
T 3rui_B 19 ESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTV 59 (118)
T ss_dssp HHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBH
T ss_pred HHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCH
Confidence 36788999999 666664443 3688889999974333
No 18
>2f4n_A Hypothetical protein MJ1651; conserved hypothetical protein, mehtanococcus jannaschii, structural genomics, PSI; 2.50A {Methanocaldococcus jannaschii}
Probab=31.82 E-value=31 Score=25.82 Aligned_cols=24 Identities=17% Similarity=0.438 Sum_probs=17.4
Q ss_pred HHHHHHhCCCcEEEEEeecCCCCCC
Q psy9632 11 IHSIAYAFPNVKIVTSAVDPEINEN 35 (83)
Q Consensus 11 i~~v~~~fP~v~I~ta~ID~~Lde~ 35 (83)
|......||+ +|..+-|||++..+
T Consensus 67 L~~~~~yfP~-TVhv~VVDPGVGt~ 90 (273)
T 2f4n_A 67 LLTAIPYFPP-SVHVAVIDPTVGSE 90 (273)
T ss_dssp HHHHGGGSCS-CEEEEECCCC----
T ss_pred HHHhhccCCC-cEEEEEECCCCCCC
Confidence 5566678999 99999999987643
No 19
>3r89_A Orotidine 5'-phosphate decarboxylase; PSI-biology, midwest center for structural genomics, MCSG, O 5-phosphate decarboxylase, lyase; 1.84A {Anaerococcus prevotii}
Probab=26.02 E-value=80 Score=23.54 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=20.9
Q ss_pred eeeC---HHHHHHHHHhCCCcEEEEEeecCCCCCCCeEecCCCCcccc
Q psy9632 4 PAIT---ISGIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDR 48 (83)
Q Consensus 4 liaS---~~Gi~~v~~~fP~v~I~ta~ID~~Lde~~yIvPGlGD~GDR 48 (83)
++++ |+=+..+.+.+|+.-| ++||+|-.|..
T Consensus 200 vVvgAT~p~e~~~iR~~~~~~~i--------------L~PGiGaQGg~ 233 (290)
T 3r89_A 200 LVVGATHSEEVEKIRKRYDKMFF--------------LIPGFGAQKAD 233 (290)
T ss_dssp EEECCCCHHHHHHHHHHTTTEEE--------------EECCCCSSHHH
T ss_pred EEECCCChHHHHHHHHhCCCCeE--------------EECCcCCCCCC
Confidence 4455 6666677777665443 89999987743
No 20
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=25.30 E-value=2.6 Score=28.97 Aligned_cols=34 Identities=6% Similarity=-0.029 Sum_probs=24.2
Q ss_pred CHHHHHHHHHh-CCCcEEEEE-eecCCCCCCCeEec
Q psy9632 7 TISGIHSIAYA-FPNVKIVTS-AVDPEINENFYVIP 40 (83)
Q Consensus 7 S~~Gi~~v~~~-fP~v~I~ta-~ID~~Lde~~yIvP 40 (83)
+++|.+++.+. +|.+.+++. .+++.+++++||.+
T Consensus 158 ~~~~~~~l~~~~~~~~~l~~~~~i~~~l~~~~~i~~ 193 (211)
T 2aee_A 158 LPKASQNFKEAGIKLITLSNYTELIAVAKLQGYITN 193 (211)
T ss_dssp CHHHHHHHHHHTCCEEESCCHHHHHHHHHHHTSSCH
T ss_pred cccHHHHHHhCCCCEEEEeeHHHHHHHHHHcCCCCH
Confidence 57788888765 676777666 67777777777643
No 21
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=24.58 E-value=78 Score=21.29 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=16.9
Q ss_pred eeeCHHHHHHHHHh----CCCcEEEE
Q psy9632 4 PAITISGIHSIAYA----FPNVKIVT 25 (83)
Q Consensus 4 liaS~~Gi~~v~~~----fP~v~I~t 25 (83)
++.|+.|++.+.+. +|++++++
T Consensus 55 iftS~~aV~~~~~~l~~~l~~~~~~a 80 (240)
T 3mw8_A 55 IFISTSAVSFATPWLKDQWPKATYYA 80 (240)
T ss_dssp EECSHHHHHHHHHHHTTCCCSSEEEE
T ss_pred EEECHHHHHHHHHHHHhhCcCCeEEE
Confidence 68999999998875 56666653
No 22
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=23.74 E-value=1.2e+02 Score=19.48 Aligned_cols=32 Identities=22% Similarity=0.502 Sum_probs=24.4
Q ss_pred HHHHHHhCCC-cEEEEEeec----CCCCCCCeEecCC
Q psy9632 11 IHSIAYAFPN-VKIVTSAVD----PEINENFYVIPGI 42 (83)
Q Consensus 11 i~~v~~~fP~-v~I~ta~ID----~~Lde~~yIvPGl 42 (83)
.+++.++||+ |-|++=... |.|+.+.|++|.=
T Consensus 18 ~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~ 54 (117)
T 1eo6_A 18 SAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSD 54 (117)
T ss_dssp HHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETT
T ss_pred HHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCC
Confidence 5788999998 666654442 5789999999983
No 23
>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus}
Probab=23.62 E-value=24 Score=25.32 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=14.7
Q ss_pred HHHHHhCCCcEEEEEeec
Q psy9632 12 HSIAYAFPNVKIVTSAVD 29 (83)
Q Consensus 12 ~~v~~~fP~v~I~ta~ID 29 (83)
..+.++||++||+.+..=
T Consensus 191 ~gv~~rfP~Lkii~~H~G 208 (312)
T 3ij6_A 191 SDLFQDYPNLKILVHHAG 208 (312)
T ss_dssp TTHHHHCTTCCEEESGGG
T ss_pred cChHhhCCCCeEEecCCc
Confidence 367899999999987654
No 24
>4inf_A Metal-dependent hydrolase; amidohydrolase, metal binding site, enzyme functi initiative, EFI; 1.48A {Novosphingobium aromaticivorans} PDB: 4ing_A*
Probab=23.53 E-value=32 Score=25.77 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=14.2
Q ss_pred HHHHHhCCCcEEEEEee
Q psy9632 12 HSIAYAFPNVKIVTSAV 28 (83)
Q Consensus 12 ~~v~~~fP~v~I~ta~I 28 (83)
..+.++||++||+.+..
T Consensus 248 ~gv~~rfP~LkiilaH~ 264 (373)
T 4inf_A 248 IGIFDKYPSLQIMVGHM 264 (373)
T ss_dssp HTHHHHCTTCCEEECHH
T ss_pred cCchhhCcCCeEEEecc
Confidence 34689999999998875
No 25
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=22.24 E-value=71 Score=19.77 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=17.9
Q ss_pred HHHHHHhCCCcEEEEEeecCC
Q psy9632 11 IHSIAYAFPNVKIVTSAVDPE 31 (83)
Q Consensus 11 i~~v~~~fP~v~I~ta~ID~~ 31 (83)
++.++++||+++++-.-+|..
T Consensus 45 l~~la~~~~~v~f~kvd~d~~ 65 (118)
T 3evi_A 45 LSLLARKFPETKFVKAIVNSC 65 (118)
T ss_dssp HHHHHHHCTTSEEEEEEGGGT
T ss_pred HHHHHHHCCCCEEEEEEhHHh
Confidence 788999999999988777764
No 26
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=21.45 E-value=76 Score=21.82 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCcEEEEEeecCCCCCCCeEecCCCCcccc
Q psy9632 9 SGIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDR 48 (83)
Q Consensus 9 ~Gi~~v~~~fP~v~I~ta~ID~~Lde~~yIvPGlGD~GDR 48 (83)
+.|+++.+.+|+.++ |+||=|..+|+
T Consensus 231 ~Sl~~l~~~~~d~~~--------------v~PGHG~p~~~ 256 (270)
T 4eyb_A 231 ASARAFGAAFPKASM--------------IVMSHSAPDSR 256 (270)
T ss_dssp HHHHHHHHHSTTCCE--------------EECSSSCCBCT
T ss_pred HHHHHHHhhCCCCcE--------------EEcCCCCCCCH
Confidence 467777777777655 88988877654
No 27
>3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus}
Probab=21.44 E-value=29 Score=25.69 Aligned_cols=16 Identities=13% Similarity=0.351 Sum_probs=13.6
Q ss_pred HHHHhCCCcEEEEEee
Q psy9632 13 SIAYAFPNVKIVTSAV 28 (83)
Q Consensus 13 ~v~~~fP~v~I~ta~I 28 (83)
.+.++||++||+.+..
T Consensus 239 gv~~rfP~LkiilaH~ 254 (357)
T 3nur_A 239 GIFDRYPKLNMIIGHW 254 (357)
T ss_dssp THHHHSTTCCEEECGG
T ss_pred CchhhCCCCeEEEecc
Confidence 4789999999998865
No 28
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=21.40 E-value=53 Score=20.85 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=15.3
Q ss_pred HHHHHHHHhCCCcEEEEEeecC
Q psy9632 9 SGIHSIAYAFPNVKIVTSAVDP 30 (83)
Q Consensus 9 ~Gi~~v~~~fP~v~I~ta~ID~ 30 (83)
.=|.++.++||+++|-.-.-+.
T Consensus 36 ~~l~~f~~~~P~i~l~l~~~~~ 57 (218)
T 2qsx_A 36 PNINDFHQRHPNIRVKILTGDG 57 (218)
T ss_dssp HHHHHHHHHCTTCEEEEEECCS
T ss_pred HHHHHHHHHCCCeEEEEEecCC
Confidence 3477889999998765544343
No 29
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=21.25 E-value=65 Score=19.69 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=15.2
Q ss_pred HHHHHHHHHhCCCcEEEEEe
Q psy9632 8 ISGIHSIAYAFPNVKIVTSA 27 (83)
Q Consensus 8 ~~Gi~~v~~~fP~v~I~ta~ 27 (83)
++=+.++.++||+++|-.-.
T Consensus 21 ~~~l~~f~~~~P~i~i~l~~ 40 (209)
T 2ql3_A 21 PSMLYAFTAEYPRASVEFRE 40 (209)
T ss_dssp HHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEE
Confidence 45688999999998765443
No 30
>1s12_A Hypothetical protein TM1457; crystal, structural genomics, PSI, berkeley structural genomics center, BSGC, protein structure initiative; 2.00A {Thermotoga maritima} SCOP: d.64.2.1
Probab=20.76 E-value=56 Score=20.21 Aligned_cols=15 Identities=13% Similarity=0.642 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCC-cEE
Q psy9632 9 SGIHSIAYAFPN-VKI 23 (83)
Q Consensus 9 ~Gi~~v~~~fP~-v~I 23 (83)
-||+.+.+.||+ ++|
T Consensus 72 ~gL~~i~~~Y~~yI~i 87 (94)
T 1s12_A 72 RSLKELEQKFPSQIRV 87 (94)
T ss_dssp HHHHHHHHHSTTTEEE
T ss_pred HHHHHHHHhCcCcEEE
Confidence 589999999998 777
No 31
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=20.71 E-value=27 Score=27.10 Aligned_cols=8 Identities=50% Similarity=1.120 Sum_probs=6.8
Q ss_pred cCcccccc
Q psy9632 67 AGGSCLPR 74 (83)
Q Consensus 67 ~~~~~~~~ 74 (83)
+||+|+|.
T Consensus 265 ~GG~C~pk 272 (431)
T 3ojo_A 265 VGGHCLAV 272 (431)
T ss_dssp CCCCCBCS
T ss_pred ccccchhh
Confidence 78999985
No 32
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=20.46 E-value=70 Score=19.39 Aligned_cols=19 Identities=5% Similarity=0.183 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCCcEEEEE
Q psy9632 8 ISGIHSIAYAFPNVKIVTS 26 (83)
Q Consensus 8 ~~Gi~~v~~~fP~v~I~ta 26 (83)
++=|.++.++||+++|-.-
T Consensus 23 ~~~l~~f~~~~P~v~l~i~ 41 (213)
T 3hhf_B 23 APLAAKFNERYPHIRLSLV 41 (213)
T ss_dssp HHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHCCCcEEEEE
Confidence 4558889999999877554
No 33
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=20.28 E-value=76 Score=24.68 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCcEEEEE-eecC
Q psy9632 8 ISGIHSIAYAFPNVKIVTS-AVDP 30 (83)
Q Consensus 8 ~~Gi~~v~~~fP~v~I~ta-~ID~ 30 (83)
++.|+.+.++||++-|+|= ++|+
T Consensus 102 ~~air~iK~~~pdl~vitDvcLc~ 125 (330)
T 1pv8_A 102 IEAIHLLRKTFPNLLVACDVCLCP 125 (330)
T ss_dssp HHHHHHHHHHSTTSEEEEEECCC-
T ss_pred HHHHHHHHHHCCCeEEEEeeeccc
Confidence 5789999999999887762 3444
No 34
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=20.19 E-value=77 Score=24.74 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCcEEEEE-eecC
Q psy9632 8 ISGIHSIAYAFPNVKIVTS-AVDP 30 (83)
Q Consensus 8 ~~Gi~~v~~~fP~v~I~ta-~ID~ 30 (83)
++.|+.+.++||++-|+|= ++|+
T Consensus 113 ~rair~iK~~~pdl~VitDvcLc~ 136 (342)
T 1h7n_A 113 IQGIKFIREYFPELYIICDVCLCE 136 (342)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSTT
T ss_pred HHHHHHHHHHCCCeEEEEeeeccc
Confidence 5789999999999887762 4444
No 35
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=20.11 E-value=79 Score=24.54 Aligned_cols=23 Identities=4% Similarity=0.040 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCcEEEE-EeecC
Q psy9632 8 ISGIHSIAYAFPNVKIVT-SAVDP 30 (83)
Q Consensus 8 ~~Gi~~v~~~fP~v~I~t-a~ID~ 30 (83)
++.|+.+.++||++-|+| .++|+
T Consensus 99 ~rair~iK~~~pdl~vitDvcLc~ 122 (323)
T 1l6s_A 99 ARMSRICKQTVPEMIVMSDTCFCE 122 (323)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSTT
T ss_pred HHHHHHHHHHCCCeEEEEeeeccc
Confidence 578999999999988776 34444
No 36
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=20.01 E-value=1.1e+02 Score=17.14 Aligned_cols=22 Identities=5% Similarity=0.086 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCcEEEEEeecCC
Q psy9632 10 GIHSIAYAFPNVKIVTSAVDPE 31 (83)
Q Consensus 10 Gi~~v~~~fP~v~I~ta~ID~~ 31 (83)
-++++.++||+++++...+|..
T Consensus 39 ~~~~~~~~~~~~~~~~vd~~~~ 60 (105)
T 4euy_A 39 KVNYVLENYNYVEKIEILLQDM 60 (105)
T ss_dssp HHHHHHHTCTTEEEEEEEECCC
T ss_pred HHHHHHHHcCCceEEEEECCCC
Confidence 4788899999988887777653
Done!