RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9632
(83 letters)
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage,
oligomerization, structural genomics, RI structural
genomics/proteomics initiative; 2.10A {Thermus
thermophilus} SCOP: c.61.1.1
Length = 208
Score = 83.0 bits (205), Expect = 1e-21
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 10 GIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53
G+ IA P+ ++V +A+D +N++ Y++PG+G+ GDR +GT+
Sbjct: 165 GLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A
{Aquifex aeolicus}
Length = 208
Score = 82.3 bits (203), Expect = 2e-21
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 10 GIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53
G+ I F V+I VD +N+ Y+IPG+G+ GDR +
Sbjct: 163 GLKRIEEKFKEVEIFVGNVDERLNDKGYIIPGLGDIGDRLYAVS 206
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase;
1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D
1jlr_A* 1jls_B* 1upf_D 1upu_D*
Length = 243
Score = 80.8 bits (199), Expect = 1e-20
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 10 GIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGT 52
GI + +P V++VT+AVD +N +Y++PGIG+FGDRYFGT
Sbjct: 200 GIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 242
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1
phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A
{Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A*
1xtu_A* 1xtv_A* 3g6w_A*
Length = 216
Score = 80.0 bits (197), Expect = 2e-20
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 10 GIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFG 51
G++ I +P + + T A+DPE+N Y++PG+G+ GDR FG
Sbjct: 175 GVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 216
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI,
protein structure initiative, joint center for structu
genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP:
c.61.1.1
Length = 221
Score = 80.0 bits (197), Expect = 2e-20
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 10 GIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53
G+ ++ + +VKI +A+D +N++ Y+IPG+G+ GDR F T+
Sbjct: 178 GVEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRTK 221
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A
{Escherichia coli}
Length = 208
Score = 79.2 bits (195), Expect = 3e-20
Identities = 19/44 (43%), Positives = 34/44 (77%)
Query: 10 GIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53
GI ++ A P+V++ T+++D +NE+ Y+IPG+G+ GD+ FGT+
Sbjct: 165 GIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK 208
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
{Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 78.8 bits (194), Expect = 5e-20
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 10 GIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53
G+ ++ A P+V I +A+D +N++ Y++PG+G+ GDR FGT+
Sbjct: 166 GVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK 209
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.60A {Burkholderia pseudomallei}
Length = 217
Score = 78.4 bits (193), Expect = 6e-20
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 10 GIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53
G+ A P+VK+ +++D ++++ Y++PG+G+ GDR FGT+
Sbjct: 173 GVQVFQDAHPDVKLYVASLDSHLDDHAYIVPGLGDAGDRLFGTK 216
>1gpw_B Amidotransferase HISH; lyase/transferase, complex
(lyase/transferase), histidine biosynthesis,
glutaminase, glutamine amidotransferase; 2.4A
{Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F
1kxj_A 2wjz_B
Length = 201
Score = 27.1 bits (61), Expect = 0.61
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 11 IHSIAYAF------PNVKIVTSAVDPEINE-NFYVIPGIGNFGD 47
I ++ + P + + IPG+G+FG+
Sbjct: 13 IMNLYRGVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGE 56
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA,
cysteine-sulfenic lyase; HET: ACO PG4; 1.95A
{Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A
1d8c_A* 2jqx_A
Length = 731
Score = 26.7 bits (59), Expect = 0.94
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 19 PNVKIVTSAVDPEI 32
V + T+ +D EI
Sbjct: 96 ERVTVETTGIDSEI 109
>1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl coenzyme A,
isocitrate lyase, persistence, GLCB, structural
genomics, PSI; 2.10A {Mycobacterium tuberculosis} SCOP:
c.1.13.1 PDB: 1n8w_A* 2gq3_A*
Length = 741
Score = 26.3 bits (58), Expect = 1.1
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 19 PNVKIVTSAVDPEI 32
+ I TS VD EI
Sbjct: 96 DDFTITTSGVDAEI 109
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 1.4
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 11 IHSIAYAFPNVKIVTSAVDPEINENFY 37
IH++A T E+ +N+
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYI 127
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.23.16.1
Length = 200
Score = 24.8 bits (55), Expect = 4.1
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 11 IHSIAYAFPNVK---IVTSAVDPEINENF--YVIPGIGNFGD 47
+ S A A V DP+ +E V+PG G+FG
Sbjct: 15 LRSAAKALEAAGFSVAVAQ--DPKAHEEADLLVLPGQGHFGQ 54
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 24.7 bits (54), Expect = 4.5
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 20 NVKIVTSAVDPEINENFYVI-PGIGNFG 46
V++V S D I+ +I PG+GN+G
Sbjct: 30 EVQLVKSPKDFNISGTSRLILPGVGNYG 57
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 24.4 bits (54), Expect = 5.4
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 38 VIPGIGNFGDRYFGTEPTITVTGGSIKATAGGSCLPRVE 76
+ G G + + G +I GS P+
Sbjct: 286 AVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKF 324
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20
familiy, phosphorylase/hydrolase-L structural genomics;
HET: MSE; 1.50A {Legionella pneumophila subsp}
Length = 472
Score = 24.2 bits (53), Expect = 5.7
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 48 RYFGTEPTITVTGGSI 63
Y+ GG+I
Sbjct: 400 TYYDKPAAYMGEGGTI 415
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 24.1 bits (53), Expect = 5.7
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 38 VIPGIGNFGDRYFGTEPTITVTGGSIKATAGGSCLPR 74
V+ G+ + +R +P + +TG S+K + G
Sbjct: 290 VVLGLASPNER-LPLDPLLLLTGRSLKGSVFGGFKGE 325
>1zsw_A Metallo protein, glyoxalase family protein; hypothetical protein
from glyoxalase family, structural GENO PSI, protein
structure initiative; 1.65A {Bacillus cereus} SCOP:
d.32.1.10 d.32.1.10
Length = 338
Score = 24.2 bits (52), Expect = 6.5
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 9/38 (23%)
Query: 1 MTTPAITISGIHSIAYAFPNVKIVTSAVDPEINENFYV 38
+ I G H I+ VT + N +FY
Sbjct: 21 QSNAMYEIKGHHHISM-------VTK--NANENNHFYK 49
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 23.9 bits (51), Expect = 7.0
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 14 IAYAFPNVKIVTSAVDPEINENFYVIPGIGNF 45
IA P +I+ S + N N V
Sbjct: 174 IAIELPPNEILFSENNDMDNNNDGVDELNKKC 205
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme,
protease, Z disulfide bond, hydrolase, metal-binding,
metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A
1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Length = 235
Score = 24.0 bits (52), Expect = 7.9
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 21 VKIVTSAVDPEINENFYVIPGIGNFGDRY 49
V I VDP + NF + G+ Y
Sbjct: 147 VTINYQNVDPSMTSNFDIDTYSRYVGEDY 175
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 23.7 bits (52), Expect = 8.3
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 38 VIPGIGNFGDRYFGTEPTITVTGGSIKATAGGSCLPRVE 76
V+ G+ G+ T P VTG + K TA G
Sbjct: 289 VVVGVAASGEE-IATRPFQLVTGRTWKGTAFGGWKSVES 326
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 23.7 bits (52), Expect = 8.5
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 38 VIPGIGNFGDRYFGTEPTITVTGGSIKATAGGSCLPRVE 76
VI G+ P + ++G + K G +
Sbjct: 290 VIVGVPPDSQN-LSMNPMLLLSGRTWKGAIFGGFKSKDS 327
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.396
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,295,390
Number of extensions: 68759
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 32
Length of query: 83
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 32
Effective length of database: 5,277,822
Effective search space: 168890304
Effective search space used: 168890304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (23.9 bits)