RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9632
(83 letters)
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
[TaxId: 1394]}
Length = 208
Score = 76.9 bits (189), Expect = 7e-20
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 10 GIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53
G+ ++ A P+V I +A+D +N++ Y++PG+G+ GDR FGT+
Sbjct: 165 GVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK 208
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus
[TaxId: 274]}
Length = 208
Score = 76.5 bits (188), Expect = 1e-19
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 10 GIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53
G+ IA P+ ++V +A+D +N++ Y++PG+G+ GDR +GT+
Sbjct: 165 GLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208
>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId:
5811]}
Length = 224
Score = 76.5 bits (188), Expect = 1e-19
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 10 GIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGT 52
GI + +P V++VT+AVD +N +Y++PGIG+FGDRYFGT
Sbjct: 181 GIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 223
>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 215
Score = 75.4 bits (185), Expect = 3e-19
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 10 GIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFG 51
G++ I +P + + T A+DPE+N Y++PG+G+ GDR FG
Sbjct: 174 GVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 215
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima
[TaxId: 2336]}
Length = 210
Score = 75.0 bits (184), Expect = 5e-19
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 10 GIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53
G+ ++ + +VKI +A+D +N++ Y+IPG+G+ GDR F T+
Sbjct: 167 GVEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRTK 210
>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo
sapiens), different isozymes [TaxId: 9606]}
Length = 176
Score = 25.6 bits (55), Expect = 0.61
Identities = 7/60 (11%), Positives = 18/60 (30%)
Query: 17 AFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTEPTITVTGGSIKATAGGSCLPRVE 76
+++ + A+ + + +P + TG + K G R +
Sbjct: 106 VIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDD 165
>d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 726
Score = 24.5 bits (53), Expect = 2.1
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 19 PNVKIVTSAVDPEI 32
+ I TS VD EI
Sbjct: 95 DDFTITTSGVDAEI 108
>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
Crs2 {Maize (Zea mays) [TaxId: 4577]}
Length = 191
Score = 23.9 bits (51), Expect = 2.7
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 37 YVIPGIGNFGDRYFGT 52
++I G+GN G++Y+GT
Sbjct: 4 WLIAGLGNPGNKYYGT 19
>d1j5pa3 d.81.1.3 (A:109-211) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 103
Score = 23.5 bits (51), Expect = 2.8
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 13 SIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 53
+ F VK VT DP ++ N +++ G+ F E
Sbjct: 62 GLIVGFEKVK-VTIVADPAMDHNIHIVRISSAIGNYEFKIE 101
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum
[TaxId: 1050]}
Length = 318
Score = 23.1 bits (50), Expect = 4.8
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 5 AITISGIHSIAYAFPNVKIVTSAV 28
T+ IH A+ + ++T+ +
Sbjct: 258 NATMESIHRWAWWCAVLTVITAGI 281
>d1gnla_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 543
Score = 23.2 bits (50), Expect = 5.8
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 22 KIVTSAVDPEINENFYVIPGIGNFGDRYFGTEPT 55
+ S P + ++P ++ DR + T
Sbjct: 293 EEFESFNGPVLLTTNCLVPPKDSYKDRVYTTGIV 326
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 190
Score = 22.8 bits (49), Expect = 6.6
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 46 GDRYFGTEPTITVTGGSIKATAGGSCL 72
G+ + ++P++TV G + + + CL
Sbjct: 17 GETFHASQPSMTVDGFTDPSNSERFCL 43
>d1luza_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha
{Vaccinia virus [TaxId: 10245]}
Length = 85
Score = 22.1 bits (47), Expect = 7.7
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 16 YAFPNVKIVTSAVDPEINENFYV 38
Y+ PN V E + Y+
Sbjct: 3 YSLPNAGDVIKGRVYEKDYALYI 25
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 303
Score = 22.7 bits (49), Expect = 8.4
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 5 AITISGIHSIAYAFPNVKIVTSAV 28
T+ GIH A + +T +
Sbjct: 259 NATMEGIHRWAIWMAVLVTLTGGI 282
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.396
Gapped
Lambda K H
0.267 0.0688 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 313,267
Number of extensions: 12798
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 16
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 47 (22.0 bits)