Query psy9635
Match_columns 439
No_of_seqs 204 out of 1416
Neff 5.9
Searched_HMMs 46136
Date Sat Aug 17 00:45:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1440|consensus 100.0 3E-107 6E-112 818.4 30.6 413 19-434 6-432 (432)
2 PLN02594 phosphatidate cytidyl 100.0 2.9E-88 6.3E-93 676.4 33.3 324 109-435 2-340 (342)
3 PRK11624 cdsA CDP-diglyceride 100.0 5.3E-52 1.2E-56 411.9 31.1 269 74-397 2-281 (285)
4 PLN02953 phosphatidate cytidyl 100.0 3.1E-51 6.8E-56 414.1 28.9 268 68-398 92-398 (403)
5 COG4589 Predicted CDP-diglycer 100.0 1.5E-48 3.3E-53 370.7 28.7 267 66-397 28-301 (303)
6 PF01148 CTP_transf_1: Cytidyl 100.0 1.4E-47 3.1E-52 369.6 27.0 258 75-397 1-259 (259)
7 COG0575 CdsA CDP-diglyceride s 100.0 3.1E-47 6.6E-52 374.5 29.4 259 73-397 1-262 (265)
8 PRK04032 hypothetical protein; 99.9 1.6E-27 3.4E-32 216.6 10.0 102 249-395 22-124 (159)
9 PF01864 DUF46: Putative integ 98.9 2.4E-09 5.2E-14 99.7 8.6 121 229-392 8-138 (175)
10 KOG4453|consensus 97.9 2.3E-05 5E-10 75.2 6.9 52 236-289 163-214 (269)
11 COG0170 SEC59 Dolichol kinase 97.0 0.001 2.3E-08 64.2 5.9 47 237-284 121-167 (216)
12 KOG2468|consensus 95.0 0.021 4.6E-07 60.2 3.7 44 240-285 420-463 (510)
13 PF09150 Carot_N: Orange carot 63.9 13 0.00028 34.4 4.9 24 404-427 59-82 (159)
14 TIGR00297 conserved hypothetic 63.3 44 0.00096 33.0 8.8 45 238-282 120-173 (237)
15 COG0004 AmtB Ammonia permease 62.9 38 0.00083 36.0 8.8 38 334-374 281-318 (409)
16 PF01940 DUF92: Integral membr 62.8 45 0.00098 32.7 8.7 49 237-285 114-171 (226)
17 TIGR03644 marine_trans_1 proba 60.3 15 0.00032 39.0 5.3 37 334-374 294-330 (404)
18 COG1836 Predicted membrane pro 58.4 35 0.00075 33.8 7.0 45 239-283 130-183 (247)
19 TIGR01594 holin_lambda phage h 48.5 58 0.0013 28.2 6.1 30 336-365 76-107 (107)
20 PF08372 PRT_C: Plant phosphor 47.6 27 0.00058 32.3 4.2 25 68-92 82-109 (156)
21 KOG1440|consensus 42.0 10 0.00022 40.1 0.6 47 231-277 269-315 (432)
22 PRK10666 ammonium transporter; 41.5 15 0.00032 39.3 1.7 38 334-374 304-341 (428)
23 TIGR00836 amt ammonium transpo 39.3 16 0.00034 38.8 1.4 38 334-374 280-317 (403)
24 PF03229 Alpha_GJ: Alphavirus 36.8 36 0.00078 30.1 3.0 19 11-29 17-35 (126)
25 PF01741 MscL: Large-conductan 34.9 1E+02 0.0023 27.5 5.8 80 350-432 36-128 (128)
26 PF11833 DUF3353: Protein of u 34.5 1.6E+02 0.0035 28.1 7.4 37 48-84 65-105 (194)
27 PF06166 DUF979: Protein of un 34.1 5.4E+02 0.012 26.5 11.6 40 48-90 66-105 (308)
28 COG1178 ThiP ABC-type Fe3+ tra 33.9 2.2E+02 0.0048 31.3 9.3 100 270-404 65-169 (540)
29 PRK05415 hypothetical protein; 31.0 4.6E+02 0.01 27.4 10.5 34 240-279 273-307 (341)
30 PRK10847 hypothetical protein; 31.0 29 0.00062 33.4 1.7 22 237-258 80-101 (219)
31 TIGR00220 mscL large conductan 27.4 1.6E+02 0.0035 26.4 5.6 84 349-432 35-127 (127)
32 PTZ00206 amino acid transporte 27.3 4.2E+02 0.0092 28.3 10.0 50 70-119 65-116 (467)
33 PRK02868 hypothetical protein; 26.4 53 0.0011 32.6 2.6 20 405-424 59-78 (245)
34 PF04868 PDE6_gamma: Retinal c 26.3 40 0.00087 27.6 1.5 18 361-378 41-58 (83)
35 PF11283 DUF3084: Protein of u 24.9 59 0.0013 26.8 2.2 19 248-266 22-42 (79)
36 PF06858 NOG1: Nucleolar GTP-b 24.4 49 0.0011 25.7 1.6 23 413-435 29-51 (58)
37 PF10766 DUF2592: Protein of u 22.6 2.8E+02 0.0061 20.0 4.9 32 77-120 4-35 (41)
38 PF09920 DUF2150: Uncharacteri 22.4 52 0.0011 31.5 1.7 15 67-81 5-19 (190)
39 PF09335 SNARE_assoc: SNARE as 22.1 45 0.00097 28.0 1.1 29 237-265 25-54 (123)
40 KOG4037|consensus 21.6 1.2E+02 0.0026 28.8 3.9 30 11-40 15-44 (240)
41 PF14163 SieB: Superinfection 21.3 1.7E+02 0.0038 26.2 4.9 24 404-427 70-93 (151)
42 PF05110 AF-4: AF-4 proto-onco 21.2 56 0.0012 39.4 2.0 10 111-120 952-961 (1191)
43 TIGR02574 stabl_TIGR02574 puta 20.5 93 0.002 24.0 2.5 22 411-432 1-22 (63)
No 1
>KOG1440|consensus
Probab=100.00 E-value=2.9e-107 Score=818.37 Aligned_cols=413 Identities=42% Similarity=0.811 Sum_probs=387.4
Q ss_pred CCCCCCCCCCC----CCCCCCCCCCcchhhhccccccCCCCCCchhhhhhhhc--hHhHHHHHHHHHHHHHHHHHHHHHH
Q psy9635 19 SATPSTEANKP----ASSSSSDVDNDDVAAVDLSKQIKQGTNKVPGFIAQYIQ--SEAYQNALIRVIFTILMLGFYVTLI 92 (439)
Q Consensus 19 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~nl~~R~isa~imi~~f~~ii 92 (439)
...+++++|.+ ++|+..+++.+.+.+.| ....|+++|++|+..+++++ ++||+||++|++++++|+..|.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~-~~~~~~s~~~~p~~~~~~l~~~~~~~~n~~~R~i~t~~mi~~f~~i~ 84 (432)
T KOG1440|consen 6 VTEPHRFGEDAANATESESTPSGELQLRDRTR-KIRPPVSKDRTPVRLKPLLSALRSRWKNFFRRGILTLAMISGFFLII 84 (432)
T ss_pred cCCccccccccccCCCCCCCcccccchhhccc-ccCCCCCCCCCcccchhhhhhCCCCceeeehHHHHHHHHHhccEEEE
Confidence 33344444444 44444455555444445 47889999999999999998 9999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccchhhHHHHHhhh
Q psy9635 93 WLGHIAIIVCIICVQVICFREIMTIGLTVYKGYSLPWIRAIAYHYLFTYNYFLYSAHVFAFIFHALRKPNTAALSFLVRY 172 (439)
Q Consensus 93 ~~G~~~l~ilv~~i~~~~~~E~i~i~~~~~~~~~lp~~~~l~w~~l~~~~y~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 172 (439)
++|+.+++.++..+|+.|++|++++++++++.+++||++.++||++.+.+|++|++.+.+++.....++ +.+.++.+|
T Consensus 85 ~~g~~~~~~lv~~iQi~~~~Eii~i~~~~~~~k~lp~f~~l~w~fl~t~~yf~yg~~~~~yf~~v~~~~--~~l~~LV~y 162 (432)
T KOG1440|consen 85 YMGHKYLMALVLVIQIKCFKEIIAIGRKVSREKDLPWFRLLNWYFLLTVNYFVYGEILVAYFAAVFIRD--RFLFFLVRY 162 (432)
T ss_pred ecCcchhhhhhhhHHHHHHHHHHHHhhccccccCCceeehhhhHHHHHHHHHHhHHHHHHHHHHHHhhh--HHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999988888 888999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhHHHHHhhh
Q psy9635 173 NTFISFCLYTLGFITFVLSLKPKCYMRQFSLFAWTHVSLLIIVTQCHFMIQNIYNGLVWFILPVSMIVINDCMAYLCGFY 252 (439)
Q Consensus 173 ~~~i~f~l~~~~~~~fvlsL~~~~~~~~~~~f~~t~~~lli~~~~s~l~i~~~~~Gl~wfi~~~~~V~~nDt~AY~~G~~ 252 (439)
|+++++.+|++|+|+|+++|+|++|+.||.+++|||++++++++|++++++|+++|++||++|+.+|.|||++||++|++
T Consensus 163 h~fi~f~lYi~gf~~FV~sL~k~~yk~QFg~fawtH~sll~Vv~qs~l~i~N~feG~fWFl~P~~lvicnDi~AY~~Gf~ 242 (432)
T KOG1440|consen 163 HRFICFALYLIGFVSFVLSLRKGIYKLQFGLFAWTHMSLLLVVTQSHLVIQNLFEGLFWFLVPAGLVICNDIFAYLFGFF 242 (432)
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhHhheeCchHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCccccccccccccchhccccc--------
Q psy9635 253 FGRTPLIKLSPKKTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPVQFTDGKYSYVCEVGYIYRQQLYTVFN-------- 324 (439)
Q Consensus 253 fGk~kL~~ISPkKTwEG~IGG~v~t~i~g~~~~~~l~~~~~~~cp~~~~~~~~~~~c~~~~~f~~~~~~~~~-------- 324 (439)
||||||+|+||||||||||||.++|++.+.++++.++++.|++||.++.++.+.++|||++.|++|+|.+|+
T Consensus 243 fGktPLiklSPKKTwEGFiGg~~~tvv~~i~~s~vL~~~~~~~cp~~d~~t~~~~~c~p~~~F~~~~y~lp~~i~~~i~~ 322 (432)
T KOG1440|consen 243 FGKTPLIKLSPKKTWEGFIGGTFGTVVFGILFSYVLGHYTFFTCPVKDFSTTPLLSCEPKPLFEPQTYGLPGVISITIRL 322 (432)
T ss_pred hcCCcccccCCCCccchhhchhHHHHHHHHHHHHHhccCeEEEecccccCCCCccccCcccccCcceecCCceeeeeccc
Confidence 999999999999999999999999999999999999999999999998877778899999999999999993
Q ss_pred ccccchhhHHHHHHHHHHHHHhhchhhHHHHHhhhhCCCccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHhccCCHH
Q psy9635 325 KEFYTYPILFHTIVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHGGLIDRFDCQFLMSTFVYVYIYTFIYRNTIQ 404 (439)
Q Consensus 325 ~~i~~~~~~~~~l~l~l~~Svig~fGDL~eS~~KR~~gVKDsG~lIPGHGGILDRfDs~ll~a~~v~~yl~~fi~~~~~~ 404 (439)
+++.+.|+++|++.+|+++|++||||||+||++||+|||||||+.|||||||+||||||++|++|+|+|+.+||+.++++
T Consensus 323 k~is~~p~~~Hsial~~faS~iaPFGGFfASgfKRafKiKDFG~~IPGHGGI~DR~DCQ~lma~Fay~Yi~SFI~~~~~s 402 (432)
T KOG1440|consen 323 KSISLPPFQFHSIALGLFASFIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQILMATFAYVYIQSFIRLPGVS 402 (432)
T ss_pred cccccchHHHHHHHHHHHHHhhccchhHHHHHhHHhhcCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHHhccCCHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHhccc
Q psy9635 405 GLLDNIYMLKPEQQLQLYYNLKQDLIARDI 434 (439)
Q Consensus 405 ~~~~~~~~l~~~~q~~l~~~l~~~~~~~~~ 434 (439)
|+++||..|+||||++|+++|+++|+++|+
T Consensus 403 ~ll~qi~~l~~~qq~~l~~~L~~~l~~~~~ 432 (432)
T KOG1440|consen 403 KLLDQILTLTPEQQLNLFEKLQRRLSSKGK 432 (432)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999998874
No 2
>PLN02594 phosphatidate cytidylyltransferase
Probab=100.00 E-value=2.9e-88 Score=676.43 Aligned_cols=324 Identities=42% Similarity=0.825 Sum_probs=303.3
Q ss_pred HHHHHHHHhhhhhccCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccchhhHHHHH----hhhhhHHHHHHHHHH
Q psy9635 109 ICFREIMTIGLTVYKGYSLPWIRAIAYHYLFTYNYFLYSAHVFAFIFHALRKPNTAALSFL----VRYNTFISFCLYTLG 184 (439)
Q Consensus 109 ~~~~E~i~i~~~~~~~~~lp~~~~l~w~~l~~~~y~~~~~~~~~~~~~~i~~~~~~~l~~l----~~~~~~i~f~l~~~~ 184 (439)
.+++|+++++++.++++++||+|+++|||+++.+|++||+.+.+++...+..+ +.+..+ .+||++++|++|++|
T Consensus 2 ~~f~Eii~i~~~~~~~~~lp~~~~l~Wyf~~~~~~~~yg~~~~~~~~~~~~~~--~~l~~~~~~~~~~h~~isf~ly~~g 79 (342)
T PLN02594 2 LMARELFNLARKAREERQLPGFRLLNWHFFFTAMFFVYGRFLKQQLVNTVTSD--KFLYRLVSGLIKYHMAICYSLYIAG 79 (342)
T ss_pred hhhHHHHHHhhhhhhhhCCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998887777 555555 899999999999999
Q ss_pred HHHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhHHHHHhhhcCCCCCcccCCC
Q psy9635 185 FITFVLSLKPKCYMRQFSLFAWTHVSLLIIVTQCHFMIQNIYNGLVWFILPVSMIVINDCMAYLCGFYFGRTPLIKLSPK 264 (439)
Q Consensus 185 ~~~fvlsL~~~~~~~~~~~f~~t~~~lli~~~~s~l~i~~~~~Gl~wfi~~~~~V~~nDt~AY~~G~~fGk~kL~~ISPk 264 (439)
+++|+++|+|++++.|+..++|+|+++++++.+++.++.|+++|++|+++|+++||+||++||++||.||||||+++|||
T Consensus 80 fv~FvlsL~k~~~k~qf~~~a~t~~~llyV~~~~~~ii~ni~~G~~w~~l~~~lV~~nDi~AY~~G~~fGk~kL~~iSPk 159 (342)
T PLN02594 80 FVWFILTLKKGMYKYQFGQYAWTHMILIVVFTQSSFTVANIFEGIFWFLLPASLIVINDIAAYLFGFFFGRTPLIKLSPK 159 (342)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccCCC
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCccccccccccccchhccccc--------ccccchhhHHHH
Q psy9635 265 KTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPVQFTDGKYSYVCEVGYIYRQQLYTVFN--------KEFYTYPILFHT 336 (439)
Q Consensus 265 KTwEG~IGG~v~t~i~g~~~~~~l~~~~~~~cp~~~~~~~~~~~c~~~~~f~~~~~~~~~--------~~i~~~~~~~~~ 336 (439)
|||||++||+++|++++.++++++.++.+++||.++.. .++++|+|+++|++|+|++|. .++++.|.++|+
T Consensus 160 KTwEGfiGg~i~T~i~~~~~~~~~~~~~~~~cp~~~~~-~~~~~C~p~~~f~~~~~~~p~~~~~~~~~~~i~~~~~~~h~ 238 (342)
T PLN02594 160 KTWEGFIGASVTTLISAFYLANIMGKFQWLTCPRKDLS-TGWLECDPDPLFKPETYPLPGWIPRWFPWKEVSVLPVQWHA 238 (342)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHhcccccccCCccccc-cCcccCCCccccccccccCCccccccccccccccchHHHHH
Confidence 99999999999999999999999999999999987433 357799999999999999992 356778889999
Q ss_pred HHHHHHHHHhhchhhHHHHHhhhhCCCccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHhccC--CHHHHHHHH-hCC
Q psy9635 337 IVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHGGLIDRFDCQFLMSTFVYVYIYTFIYRN--TIQGLLDNI-YML 413 (439)
Q Consensus 337 l~l~l~~Svig~fGDL~eS~~KR~~gVKDsG~lIPGHGGILDRfDs~ll~a~~v~~yl~~fi~~~--~~~~~~~~~-~~l 413 (439)
+++|+++|++||+|||+||++||++||||||++||||||+|||||||++|+|++|+|+.+||+.+ +++++++++ .+|
T Consensus 239 l~l~l~aSl~a~fGdlfaS~~KR~~~IKDfG~~IPGHGGilDRfDs~l~~~~f~y~y~~~fi~~~~~~~~~il~~i~~~l 318 (342)
T PLN02594 239 LSLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYYQSFIVPQSVSVGKLLDQILTLL 318 (342)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHccCCCcccCccCCCccccccccHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999855 567799988 569
Q ss_pred ChHHHHHHHHHHHHHHHhcccC
Q psy9635 414 KPEQQLQLYYNLKQDLIARDIL 435 (439)
Q Consensus 414 ~~~~q~~l~~~l~~~~~~~~~~ 435 (439)
++|||++|++.|+++|++||+-
T Consensus 319 ~~~~q~~l~~~l~~~l~~~g~~ 340 (342)
T PLN02594 319 TDEEQKELYVKLGQMLQERGLG 340 (342)
T ss_pred CHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999864
No 3
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=100.00 E-value=5.3e-52 Score=411.92 Aligned_cols=269 Identities=23% Similarity=0.406 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchhHHHHHHHHHHHHHHHHhHHHHHH
Q psy9635 74 ALIRVIFTILMLGFYVTLIWL-GHIAIIVCIICVQVICFREIMTIGLTVYKGYSLPWIRAIAYHYLFTYNYFLYSAHVFA 152 (439)
Q Consensus 74 l~~R~isa~imi~~f~~ii~~-G~~~l~ilv~~i~~~~~~E~i~i~~~~~~~~~lp~~~~l~w~~l~~~~y~~~~~~~~~ 152 (439)
+++|++|+++++++++.+++. |++++.+++.++..++.+|+.++.+...+. ..++...+. ........+... .
T Consensus 2 l~~Riita~vlv~l~l~~i~~~~~~~f~~l~~~~~~l~~~E~~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~----~ 75 (285)
T PRK11624 2 LKYRLITAFILIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWGQLSGFASRS-QRVWLAVLC-GLLLALMLFLLP----E 75 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc-hhHHHHHHH-HHHHHHHHHHHH----H
Confidence 578999999999999998877 568999999999999999999996432111 111111110 011000000000 0
Q ss_pred HHHHHhccchhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhcccchh-hhhhhhHHHHHHHH-HHHHHHHHH-HHhh----
Q psy9635 153 FIFHALRKPNTAALSFLVRYNTFISFCLYTLGFITFVLSLKPKCYM-RQFSLFAWTHVSLL-IIVTQCHFM-IQNI---- 225 (439)
Q Consensus 153 ~~~~~i~~~~~~~l~~l~~~~~~i~f~l~~~~~~~fvlsL~~~~~~-~~~~~f~~t~~~ll-i~~~~s~l~-i~~~---- 225 (439)
+... ... .... .....+....... ..++.. ..+... .......++..+.+ ++.....++ +++.
T Consensus 76 ~~~~---~~~-~~~~----~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 145 (285)
T PRK11624 76 YHHN---IHQ-PLVE----ISLWASLGWWIVA-LLLVLF-YPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDE 145 (285)
T ss_pred hhhh---hhH-HHHH----HHHHHHHHHHHHH-HHHHHH-ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 0000 000 0000 0000001000110 111111 111100 00011112222222 222222222 3321
Q ss_pred --ccchhHHHHHHHHHhhhhhHHHHHhhhcCCCCCc-ccCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccC
Q psy9635 226 --YNGLVWFILPVSMIVINDCMAYLCGFYFGRTPLI-KLSPKKTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPVQFTD 302 (439)
Q Consensus 226 --~~Gl~wfi~~~~~V~~nDt~AY~~G~~fGk~kL~-~ISPkKTwEG~IGG~v~t~i~g~~~~~~l~~~~~~~cp~~~~~ 302 (439)
.+|..|.++.+.+||+|||+||++||.||||||+ ++||||||||++||++++++++.+++++.. ..
T Consensus 146 ~~~~G~~~vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~-~~---------- 214 (285)
T PRK11624 146 NHYSGAWWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAP-LD---------- 214 (285)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHc-cc----------
Confidence 1377888889999999999999999999999998 999999999999999999999888875421 10
Q ss_pred CCccccccccccccchhcccccccccchhhHHHHHHHHHHHHHhhchhhHHHHHhhhhCCCccCCCCCCCCcchhhhhhh
Q psy9635 303 GKYSYVCEVGYIYRQQLYTVFNKEFYTYPILFHTIVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHGGLIDRFDC 382 (439)
Q Consensus 303 ~~~~~~c~~~~~f~~~~~~~~~~~i~~~~~~~~~l~l~l~~Svig~fGDL~eS~~KR~~gVKDsG~lIPGHGGILDRfDs 382 (439)
. + .++.++++++++++||+|||+||++||++||||||+++|||||+|||+||
T Consensus 215 --------------------------~-~-~~~~~~~~~~~~~~~~~GDL~ES~lKR~~gVKDSG~llPGHGGiLDR~DS 266 (285)
T PRK11624 215 --------------------------V-A-PVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDS 266 (285)
T ss_pred --------------------------c-c-HHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCCCcCcCCCcCcchhhHhH
Confidence 0 0 24678899999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHH
Q psy9635 383 QFLMSTFVYVYIYTF 397 (439)
Q Consensus 383 ~ll~a~~v~~yl~~f 397 (439)
+++++|++|+++..+
T Consensus 267 Llfa~P~~~~~~~~~ 281 (285)
T PRK11624 267 LTAAVPVFACLLLLV 281 (285)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988866543
No 4
>PLN02953 phosphatidate cytidylyltransferase
Probab=100.00 E-value=3.1e-51 Score=414.10 Aligned_cols=268 Identities=26% Similarity=0.358 Sum_probs=186.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhhccC-CCchhHHHHHHHH-HHHHHHHH
Q psy9635 68 SEAYQNALIRVIFTILMLGFYVTLIWLGHIAIIVCIICVQVICFREIMTIGLTVYKG-YSLPWIRAIAYHY-LFTYNYFL 145 (439)
Q Consensus 68 ~~r~~nl~~R~isa~imi~~f~~ii~~G~~~l~ilv~~i~~~~~~E~i~i~~~~~~~-~~lp~~~~l~w~~-l~~~~y~~ 145 (439)
.++.||+++|++|+++++++.+.+++.|++++.+++.++..++.+|+.++.+..... ...+..+...+.- ..+..+..
T Consensus 92 ~~~~~~l~~RIiSglvl~~l~l~vV~~GGw~F~~~va~iv~lg~~E~frmv~~~gi~p~~~~~~~~~~~~g~v~~~~~~v 171 (403)
T PLN02953 92 QKKASQLKKRVIFGIGIGLPVGCVVLAGGWFFTVALAASVFIGSREYFELVRSRGIAKGMTPPPRYVSRVCSVICALMPI 171 (403)
T ss_pred ccccccHHHHHHHHHHHHHHHHheeeeCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999999999999999999999999999999996432110 0001111111000 00000000
Q ss_pred hHHHHHHHHHHHhccchhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhcccchhhhhhhhHHHHHHHH-HHHHHHHHHHHh
Q psy9635 146 YSAHVFAFIFHALRKPNTAALSFLVRYNTFISFCLYTLGFITFVLSLKPKCYMRQFSLFAWTHVSLL-IIVTQCHFMIQN 224 (439)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~i~f~l~~~~~~~fvlsL~~~~~~~~~~~f~~t~~~ll-i~~~~s~l~i~~ 224 (439)
..++. + . ....+..++..+.+..+.++.. ..+...+.+..+++ +....++.+..+
T Consensus 172 -----~~~~~-----g---~----------~~~~l~l~~~~i~~~ll~~~~~-~~~~di~~s~fgl~Yig~lpsf~v~Lr 227 (403)
T PLN02953 172 -----LTLYF-----G---N----------IDILVTSAAFLVAIALLVQRGS-PRFAQLSSTMFGLFYCGYLPCFWVKLR 227 (403)
T ss_pred -----HHHHH-----h---H----------HHHHHHHHHHHHHHHHHhcCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000 0 0 0000101111111111222211 12333343444332 333345544322
Q ss_pred h------------------------------------ccchhHHHHHHHHHhhhhhHHHHHhhhcCCCCCcccCCCCchh
Q psy9635 225 I------------------------------------YNGLVWFILPVSMIVINDCMAYLCGFYFGRTPLIKLSPKKTWE 268 (439)
Q Consensus 225 ~------------------------------------~~Gl~wfi~~~~~V~~nDt~AY~~G~~fGk~kL~~ISPkKTwE 268 (439)
. ..|+.|+++.+++||+||++||++||.|||||+.++|||||||
T Consensus 228 ~~~~~~~~~~~~~~~f~~l~~~~~~~~p~~~~~~~~~~~Gl~~~l~~~~~vw~~Di~AY~~G~~fGk~kl~~ISPkKTwE 307 (403)
T PLN02953 228 CGLAAPALNTGKLSPFISLKFSIGKTWPILLGGQAHWTVGLVATLISFSGVIATDTFAFLGGKAFGRTPLTSISPKKTWE 307 (403)
T ss_pred hccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCeee
Confidence 1 2488889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCccccccccccccchhcccccccccchhhHHHHHHHHHHHHHhhc
Q psy9635 269 GFIGGAIFTVLLSILLAFYLTKFDYFVCPVQFTDGKYSYVCEVGYIYRQQLYTVFNKEFYTYPILFHTIVISIFASLIGP 348 (439)
Q Consensus 269 G~IGG~v~t~i~g~~~~~~l~~~~~~~cp~~~~~~~~~~~c~~~~~f~~~~~~~~~~~i~~~~~~~~~l~l~l~~Svig~ 348 (439)
|++||++++++++.+.++++. .. ...++.+++++++++.|+
T Consensus 308 G~iGGil~~vlv~~l~~~~l~-~~--------------------------------------~~~~~~i~lg~li~~~~~ 348 (403)
T PLN02953 308 GTFVGLVGCIAITILLSKSLS-WP--------------------------------------QSLFSSIAFGFLNFFGSV 348 (403)
T ss_pred eehhHHHHHHHHHHHHHHHHc-cc--------------------------------------hHHHHHHHHHHHHHHHHH
Confidence 999999999999888776542 11 013577999999999999
Q ss_pred hhhHHHHHhhhhCCCccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHh
Q psy9635 349 FGGFFASGFKRAFNIKDFSDIIPGHGGLIDRFDCQFLMSTFVYVYIYTFI 398 (439)
Q Consensus 349 fGDL~eS~~KR~~gVKDsG~lIPGHGGILDRfDs~ll~a~~v~~yl~~fi 398 (439)
+||++||++||++||||||+++|||||+|||+||+++++|++|+++++.+
T Consensus 349 ~GDL~eS~iKR~~gVKDsG~liPGHGGiLDR~DSllfaaPv~y~~~~~~~ 398 (403)
T PLN02953 349 FGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFIKTSL 398 (403)
T ss_pred hhHHHHHHHhHccCCCCccccCCCCCcchhhHhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999887654
No 5
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=100.00 E-value=1.5e-48 Score=370.69 Aligned_cols=267 Identities=22% Similarity=0.413 Sum_probs=199.1
Q ss_pred hchHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchhHHHHHHHHHHHHHHHH
Q psy9635 66 IQSEAYQNALIRVIFTILMLGFYVTLIWLGHIAIIVCIICVQVICFREIMTIGLTVYKGYSLPWIRAIAYHYLFTYNYFL 145 (439)
Q Consensus 66 ~~~~r~~nl~~R~isa~imi~~f~~ii~~G~~~l~ilv~~i~~~~~~E~i~i~~~~~~~~~lp~~~~l~w~~l~~~~y~~ 145 (439)
..++++.|+..|+-++|+|+.++..++..|.++...++..+++.+++|++++.+.++.+| ++. ...|+.++.+|++
T Consensus 28 ~~~~~~~~l~~RI~aWW~mv~i~~~~~~l~~~~~l~lF~~iSflalrEfltl~ptr~~d~-~~l---~~~Y~~lplqy~~ 103 (303)
T COG4589 28 LPERKIDELNLRIRAWWVMVIIFSLVISLPRWMTLTLFGLISFLALREFLTLIPTRRPDH-LAL---VWFYWVLPLQYLL 103 (303)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCc-cch---hhhhhhhhHhHHH
Confidence 336688999999999999999999999999999999999999999999999998765543 332 2457788999999
Q ss_pred hHHHHHHHHHHHhccchhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHH---HHH
Q psy9635 146 YSAHVFAFIFHALRKPNTAALSFLVRYNTFISFCLYTLGFITFVLSLKPKCYMRQFSLFAWTHVSLLIIVTQCH---FMI 222 (439)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~i~f~l~~~~~~~fvlsL~~~~~~~~~~~f~~t~~~lli~~~~s~---l~i 222 (439)
.+.++++.|..+++.. .++...+..++.-.++.+....+..-|... +-++..|| +..
T Consensus 104 i~i~wy~mf~ifipvY------------------~fL~Lp~l~~L~gdt~gFl~~~s~i~wg~m--ltvfcish~~~llt 163 (303)
T COG4589 104 IGIDWYEMFIIFIPVY------------------GFLILPILMVLVGDTSGFLHRVSAIQWGWM--LTVFCISHAAYLLT 163 (303)
T ss_pred hhhHHHHHHHHHHHHH------------------HHHHHHHHHHHhcchhhHHHHhHHHHHHHH--HHHHHHHhhHHHhh
Confidence 8877776665544221 011111111111112222111111112111 11112222 222
Q ss_pred H---hhccchhHHHHHHHHHhhhhhHHHHHhhhcCCCCCc-ccCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy9635 223 Q---NIYNGLVWFILPVSMIVINDCMAYLCGFYFGRTPLI-KLSPKKTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPV 298 (439)
Q Consensus 223 ~---~~~~Gl~wfi~~~~~V~~nDt~AY~~G~~fGk~kL~-~ISPkKTwEG~IGG~v~t~i~g~~~~~~l~~~~~~~cp~ 298 (439)
. |...|-...++.+.++..||+++|++||.|||||.. ++||||||||++||++.+++.+.++.+ ++++.
T Consensus 164 L~~~~~~~~~ll~iflli~~q~nDV~QYvwGk~fGk~Ki~P~vSPnKTveGl~GGilt~~~~~~~l~~-lTp~~------ 236 (303)
T COG4589 164 LDITNFQGGALLVIFLLILTELNDVAQYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIASAILGL-LTPLN------ 236 (303)
T ss_pred CCCCCcCccchHHHHHHHHHHHHHHHHHHHhhhcCCcccCCCcCCcchHHHHhhhHHHHHHHHHHHHH-hCCCc------
Confidence 2 233344466677888999999999999999999997 999999999999999999999998884 44432
Q ss_pred cccCCCccccccccccccchhcccccccccchhhHHHHHHHHHHHHHhhchhhHHHHHhhhhCCCccCCCCCCCCcchhh
Q psy9635 299 QFTDGKYSYVCEVGYIYRQQLYTVFNKEFYTYPILFHTIVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHGGLID 378 (439)
Q Consensus 299 ~~~~~~~~~~c~~~~~f~~~~~~~~~~~i~~~~~~~~~l~l~l~~Svig~fGDL~eS~~KR~~gVKDsG~lIPGHGGILD 378 (439)
.+|+++.|+.+.+.|.+||++.|++||+.||||+|+++|||||+||
T Consensus 237 ----------------------------------~lqa~~~~~~I~l~GF~GdlvmSaiKRd~gvKD~G~li~GHGGiLD 282 (303)
T COG4589 237 ----------------------------------TLQALLAGLLIGLSGFCGDLVMSAIKRDVGVKDSGKLLPGHGGILD 282 (303)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccCCCCccHHH
Confidence 4688999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q psy9635 379 RFDCQFLMSTFVYVYIYTF 397 (439)
Q Consensus 379 RfDs~ll~a~~v~~yl~~f 397 (439)
|+||+++.||..+.+++.+
T Consensus 283 R~DSL~FtAPiffh~~ry~ 301 (303)
T COG4589 283 RVDSLIFTAPIFFHFIRYC 301 (303)
T ss_pred HHHHHHHhhhHHHHHHHHh
Confidence 9999999999988776543
No 6
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=100.00 E-value=1.4e-47 Score=369.56 Aligned_cols=258 Identities=28% Similarity=0.538 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchhHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy9635 75 LIRVIFTILMLGFYVTLIWLGHIAIIVCIICVQVICFREIMTIGLTVYKGYSLPWIRAIAYHYLFTYNYFLYSAHVFAFI 154 (439)
Q Consensus 75 ~~R~isa~imi~~f~~ii~~G~~~l~ilv~~i~~~~~~E~i~i~~~~~~~~~lp~~~~l~w~~l~~~~y~~~~~~~~~~~ 154 (439)
++|++++++++++++.+++.|++++..++.++++.+++|+.++.++..+....+..+..+|+++....++.+.......+
T Consensus 1 k~Ri~t~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
T PF01148_consen 1 KQRIITAIILIPIFILLLFLGPWYFLLLVAVIIFLGFWELFRLFRIKSRSKFRLIIRILSWIFFLILFLFFYLRWLIPYF 80 (259)
T ss_pred CEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 47999999999999999999999999999999999999999997765544444444455666555444433322221111
Q ss_pred HHHhccchhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhcccch-hhhhhhhHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q psy9635 155 FHALRKPNTAALSFLVRYNTFISFCLYTLGFITFVLSLKPKCY-MRQFSLFAWTHVSLLIIVTQCHFMIQNIYNGLVWFI 233 (439)
Q Consensus 155 ~~~i~~~~~~~l~~l~~~~~~i~f~l~~~~~~~fvlsL~~~~~-~~~~~~f~~t~~~lli~~~~s~l~i~~~~~Gl~wfi 233 (439)
... ........+ +...+... ......++..+..+. .......+...+..+.+
T Consensus 81 ~~~----------------------~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 133 (259)
T PF01148_consen 81 FAT----------------------ILIIALLLF-LVLGERRIRRIISTLFGLIYFGIF----LLLLLIFFWFFGPPLAL 133 (259)
T ss_pred HHH----------------------HHHHhhhHH-hhhcchHHHHHHHHHHHHHHHhHH----HHHHHhhhhccchHHHH
Confidence 110 000010111 11111111 111111222221111 11222333445677888
Q ss_pred HHHHHHhhhhhHHHHHhhhcCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCccccccccc
Q psy9635 234 LPVSMIVINDCMAYLCGFYFGRTPLIKLSPKKTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPVQFTDGKYSYVCEVGY 313 (439)
Q Consensus 234 ~~~~~V~~nDt~AY~~G~~fGk~kL~~ISPkKTwEG~IGG~v~t~i~g~~~~~~l~~~~~~~cp~~~~~~~~~~~c~~~~ 313 (439)
..++++|.+|++||++||.||||+..++||||||||++||++++.+.+.++.++.....
T Consensus 134 ~~i~~~~~gD~~A~l~G~~fGk~~~~~~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~--------------------- 192 (259)
T PF01148_consen 134 IGILILGIGDSFAYLVGRRFGKHLAPKISPKKTWEGSIAGFISSFIISFLLLYYLSSFF--------------------- 192 (259)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCHHHHhHHHHHHHHHHHHHHHHhcchh---------------------
Confidence 88999999999999999999999445899999999999999999998888776542210
Q ss_pred cccchhcccccccccchhhHHHHHHHHHHHHHhhchhhHHHHHhhhhCCCccCCCCCCCCcchhhhhhhhhhHHHHHHHH
Q psy9635 314 IYRQQLYTVFNKEFYTYPILFHTIVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHGGLIDRFDCQFLMSTFVYVY 393 (439)
Q Consensus 314 ~f~~~~~~~~~~~i~~~~~~~~~l~l~l~~Svig~fGDL~eS~~KR~~gVKDsG~lIPGHGGILDRfDs~ll~a~~v~~y 393 (439)
...++.+++++++++++++||++||++||++||||||++||||||++||+||+++++|+.|++
T Consensus 193 -----------------~~~~~~~~~~~~~~i~~~~gdl~~S~~KR~~~iKD~g~lipghGg~lDr~d~~l~~~~~~~~~ 255 (259)
T PF01148_consen 193 -----------------LSWWQAILISLLASIVEAFGDLFESAIKRDAGIKDSGNLIPGHGGILDRFDSLLFAAPVFYIL 255 (259)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCcCCcccchHhHHHHHHHHHHH
Confidence 014788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy9635 394 IYTF 397 (439)
Q Consensus 394 l~~f 397 (439)
+..|
T Consensus 256 ~~~f 259 (259)
T PF01148_consen 256 LKIF 259 (259)
T ss_pred HHHC
Confidence 8765
No 7
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=100.00 E-value=3.1e-47 Score=374.45 Aligned_cols=259 Identities=27% Similarity=0.431 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchhHHHHHHHHHHHHHHHHhHHHHHH
Q psy9635 73 NALIRVIFTILMLGFYVTLIWLGHIAIIVCIICVQVICFREIMTIGLTVYKGYSLPWIRAIAYHYLFTYNYFLYSAHVFA 152 (439)
Q Consensus 73 nl~~R~isa~imi~~f~~ii~~G~~~l~ilv~~i~~~~~~E~i~i~~~~~~~~~lp~~~~l~w~~l~~~~y~~~~~~~~~ 152 (439)
++++|++++.++++.+...++.|++++.+++.++++.+++|++++...............+.+...+.......+...
T Consensus 1 ~~~~r~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (265)
T COG0575 1 MLKQRVITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLVLLDGRRLLGDGK-- 78 (265)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhHH--
Confidence 467899999999988888888889999999999999999999999754322211111112222221111111010000
Q ss_pred HHHHHhccchhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHHHHHH-hh-ccchh
Q psy9635 153 FIFHALRKPNTAALSFLVRYNTFISFCLYTLGFITFVLSLKPKCYMRQFSLFAWTHVSLLIIVTQCHFMIQ-NI-YNGLV 230 (439)
Q Consensus 153 ~~~~~i~~~~~~~l~~l~~~~~~i~f~l~~~~~~~fvlsL~~~~~~~~~~~f~~t~~~lli~~~~s~l~i~-~~-~~Gl~ 230 (439)
+ ..+ ........+ ..........-...+..+...+++... .++...+ .. .+|..
T Consensus 79 --------~----------~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~ 134 (265)
T COG0575 79 --------E----------TLL-GFLLGFLLG--LVLLGVIYYLSDSLFKLFGLLYVGVGL---LALLPFRLGVLYSGLI 134 (265)
T ss_pred --------H----------HHH-HHHHHHHHH--HHHHHhhhhHHhhhhhhHHHHHHHHHH---HHHHHHHHhhhhhhHH
Confidence 0 000 000000111 000000000000011112222222111 1111111 11 47899
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhcCCCCCc-ccCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCccccc
Q psy9635 231 WFILPVSMIVINDCMAYLCGFYFGRTPLI-KLSPKKTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPVQFTDGKYSYVC 309 (439)
Q Consensus 231 wfi~~~~~V~~nDt~AY~~G~~fGk~kL~-~ISPkKTwEG~IGG~v~t~i~g~~~~~~l~~~~~~~cp~~~~~~~~~~~c 309 (439)
|.++++++||+||++||++||.|||||+. ++||||||||++||++++++++..........
T Consensus 135 ~~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~------------------ 196 (265)
T COG0575 135 LLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSL------------------ 196 (265)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhh------------------
Confidence 99999999999999999999999999997 89999999999999999999888776553210
Q ss_pred cccccccchhcccccccccchhhHHHHHHHHHHHHHhhchhhHHHHHhhhhCCCccCCCCCCCCcchhhhhhhhhhHHHH
Q psy9635 310 EVGYIYRQQLYTVFNKEFYTYPILFHTIVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHGGLIDRFDCQFLMSTF 389 (439)
Q Consensus 310 ~~~~~f~~~~~~~~~~~i~~~~~~~~~l~l~l~~Svig~fGDL~eS~~KR~~gVKDsG~lIPGHGGILDRfDs~ll~a~~ 389 (439)
.+..++.+.+++++++++|+||++||++||++||||||++||||||+|||+||++++ +
T Consensus 197 --------------------~~~~~~~~~l~~~~~l~~~lGDL~eS~iKR~~gvKDsg~liPGHGGilDR~Dsl~~~--~ 254 (265)
T COG0575 197 --------------------ILNIWTLLILGLLLVLTSQLGDLFESYIKRLLGIKDSGWLIPGHGGILDRFDSLLFV--A 254 (265)
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCcCCCCCCcCcccccHhhHHHH--H
Confidence 012467899999999999999999999999999999999999999999999999988 6
Q ss_pred HHHHHHHH
Q psy9635 390 VYVYIYTF 397 (439)
Q Consensus 390 v~~yl~~f 397 (439)
+|+|...+
T Consensus 255 ~~~~~~~~ 262 (265)
T COG0575 255 VYLFLLLF 262 (265)
T ss_pred HHHHHHHH
Confidence 66666544
No 8
>PRK04032 hypothetical protein; Provisional
Probab=99.94 E-value=1.6e-27 Score=216.65 Aligned_cols=102 Identities=25% Similarity=0.413 Sum_probs=87.2
Q ss_pred Hhhhc-CCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCccccccccccccchhcccccccc
Q psy9635 249 CGFYF-GRTPLIKLSPKKTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPVQFTDGKYSYVCEVGYIYRQQLYTVFNKEF 327 (439)
Q Consensus 249 ~G~~f-Gk~kL~~ISPkKTwEG~IGG~v~t~i~g~~~~~~l~~~~~~~cp~~~~~~~~~~~c~~~~~f~~~~~~~~~~~i 327 (439)
.||.| +++|+ +||||||||++||++++++.+.+++++.. .. +
T Consensus 22 ~g~~~~dg~~i--iSP~KTwEG~iGGv~~~~l~~~~~~~~~~-~~----------------~------------------ 64 (159)
T PRK04032 22 FGKTFVDGRRI--LGDGKTWRGLIGGILFGTLVGLIQNLLVP-AY----------------I------------------ 64 (159)
T ss_pred CCCcCCCCCee--CCCCCcHHHhHHHHHHHHHHHHHHHHHHc-cc----------------h------------------
Confidence 38888 66676 89999999999999999999888876432 10 0
Q ss_pred cchhhHHHHHHHHHHHHHhhchhhHHHHHhhhhCCCccCCCCCCCCcchhhhhhhhhhHHHHHHHHHH
Q psy9635 328 YTYPILFHTIVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHGGLIDRFDCQFLMSTFVYVYIY 395 (439)
Q Consensus 328 ~~~~~~~~~l~l~l~~Svig~fGDL~eS~~KR~~gVKDsG~lIPGHGGILDRfDs~ll~a~~v~~yl~ 395 (439)
.+ .++++++|+++++.||+|||+||++||++|||| |+.+| +|||+||+++.+|++|++..
T Consensus 65 --~~-~~~~~~~g~li~v~~~~GDL~eS~iKR~~gVKD-g~~iP----iLDRiDsll~a~p~~~l~~~ 124 (159)
T PRK04032 65 --GA-LGVAIILAFLLSFGALLGDMLGSFIKRRLGLER-GAPAP----LLDQLDFVVGALLFAYLVAP 124 (159)
T ss_pred --hH-HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCC-cCccc----chhhhHHHHHHHHHHHHHHh
Confidence 01 356899999999999999999999999999999 89998 99999999999999998865
No 9
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=98.95 E-value=2.4e-09 Score=99.69 Aligned_cols=121 Identities=28% Similarity=0.542 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHhhhhhHHHHHhhhcCCCCC------c--c--cCCCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy9635 229 LVWFILPVSMIVINDCMAYLCGFYFGRTPL------I--K--LSPKKTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPV 298 (439)
Q Consensus 229 l~wfi~~~~~V~~nDt~AY~~G~~fGk~kL------~--~--ISPkKTwEG~IGG~v~t~i~g~~~~~~l~~~~~~~cp~ 298 (439)
.+|+++|.-+ +|-... ++| |+||+ . | +=.+|||||+++|.+++++++.+.+... ++..
T Consensus 8 ~~~~~lPay~--an~~a~-l~g---g~~PiD~G~~~~DGrRilGdgKTwrG~i~gvl~g~l~g~i~~~l~-~~~~----- 75 (175)
T PF01864_consen 8 ALWLMLPAYV--ANGSAV-LFG---GGRPIDFGKTFRDGRRILGDGKTWRGFIGGVLAGTLVGIIQGLLL-PLSI----- 75 (175)
T ss_pred HHHHHhHHHh--cCchHH-HhC---CCCcccCCCccCCCCEecCCCCeEEeeeHHHHHHHHHHHHHHHHh-hhcc-----
Confidence 3566666433 454443 444 34444 1 1 5689999999999999999988766542 1110
Q ss_pred cccCCCccccccccccccchhcccccccccchhhHHHHHHHHHHHHHhhchhhHHHHHhhhhCCCccCCCCCCCCcchhh
Q psy9635 299 QFTDGKYSYVCEVGYIYRQQLYTVFNKEFYTYPILFHTIVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHGGLID 378 (439)
Q Consensus 299 ~~~~~~~~~~c~~~~~f~~~~~~~~~~~i~~~~~~~~~l~l~l~~Svig~fGDL~eS~~KR~~gVKDsG~lIPGHGGILD 378 (439)
. ..+.+.-..+.+.+++..++.+..||+..|-+||..|++- |.-.| ++|
T Consensus 76 ---~-----------------------~~~~~~~~~~~~~~g~ll~~gamlGDl~~SFIKRRlgi~~-G~~ap----~lD 124 (175)
T PF01864_consen 76 ---F-----------------------ALYFYGSLFFNLLLGFLLGLGAMLGDLPGSFIKRRLGIPR-GAPAP----GLD 124 (175)
T ss_pred ---c-----------------------ccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCC-CCcCc----cch
Confidence 0 0000111345688899999999999999999999999994 43344 689
Q ss_pred hhhhhhhHHHHHHH
Q psy9635 379 RFDCQFLMSTFVYV 392 (439)
Q Consensus 379 RfDs~ll~a~~v~~ 392 (439)
++|+.+....+.+.
T Consensus 125 Qldf~lgall~~~~ 138 (175)
T PF01864_consen 125 QLDFVLGALLLLYL 138 (175)
T ss_pred hHHHHHHHHHHHHH
Confidence 99997766555544
No 10
>KOG4453|consensus
Probab=97.92 E-value=2.3e-05 Score=75.20 Aligned_cols=52 Identities=29% Similarity=0.383 Sum_probs=45.2
Q ss_pred HHHHhhhhhHHHHHhhhcCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy9635 236 VSMIVINDCMAYLCGFYFGRTPLIKLSPKKTWEGFIGGAIFTVLLSILLAFYLT 289 (439)
Q Consensus 236 ~~~V~~nDt~AY~~G~~fGk~kL~~ISPkKTwEG~IGG~v~t~i~g~~~~~~l~ 289 (439)
+++-|| |+.|=.+||.||++|. ++.|||+|.|.||.+.++++.++++.+++.
T Consensus 163 ~Llswc-Dt~AdtvGRKfG~~tp-k~aknKSlAGSIgaft~Gvf~c~vy~gyf~ 214 (269)
T KOG4453|consen 163 SLLSWC-DTIADTVGRKFGSTTP-KYAKNKSLAGSIGAFTFGVFICIVYLGYFS 214 (269)
T ss_pred HHHHHh-hhHHHHHhhhccccCC-CcCCCccccchHHHHHHHHHHHHHHHHHHh
Confidence 456777 9999999999999985 799999999999999999998887766543
No 11
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=97.04 E-value=0.001 Score=64.16 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=40.2
Q ss_pred HHHhhhhhHHHHHhhhcCCCCCcccCCCCchhHHHHHHHHHHHHHHHH
Q psy9635 237 SMIVINDCMAYLCGFYFGRTPLIKLSPKKTWEGFIGGAIFTVLLSILL 284 (439)
Q Consensus 237 ~~V~~nDt~AY~~G~~fGk~kL~~ISPkKTwEG~IGG~v~t~i~g~~~ 284 (439)
.+.-..|.+|=++|+.+||||. +.++||||||++.+++++.+++.++
T Consensus 121 ~~l~~GD~lAsiiG~~~G~~~~-~~~~~KSleGSla~fi~~~l~~~~~ 167 (216)
T COG0170 121 LVLALGDGLASIIGKRYGRHKR-ILGNGKSLEGSLAFFIASFLVLLVL 167 (216)
T ss_pred HHHHHhhHHHHHhCcccCcccc-ccCCCCchhhhHHHHHHHHHHHHHH
Confidence 3445789999999999999943 6899999999999999998887644
No 12
>KOG2468|consensus
Probab=94.98 E-value=0.021 Score=60.16 Aligned_cols=44 Identities=32% Similarity=0.403 Sum_probs=38.4
Q ss_pred hhhhhHHHHHhhhcCCCCCcccCCCCchhHHHHHHHHHHHHHHHHH
Q psy9635 240 VINDCMAYLCGFYFGRTPLIKLSPKKTWEGFIGGAIFTVLLSILLA 285 (439)
Q Consensus 240 ~~nDt~AY~~G~~fGk~kL~~ISPkKTwEG~IGG~v~t~i~g~~~~ 285 (439)
=+.||+|-++|+.+||++-.+- |||.||.+.++++..++.+++-
T Consensus 420 GiGDTmASiiG~r~G~~RW~~T--kKTlEGT~Afivs~~iv~~ll~ 463 (510)
T KOG2468|consen 420 GIGDTMASIIGKRYGRIRWSGT--KKTLEGTLAFIVSSFIVCLLLL 463 (510)
T ss_pred ccchHHHHHHhhhhcceecCCC--cceeehhhHHHHHHHHHHHHHH
Confidence 3679999999999999997654 9999999999999988777654
No 13
>PF09150 Carot_N: Orange carotenoid protein, N-terminal ; InterPro: IPR015233 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Orange carotenoid-binding proteins (OCP) were first identified in cyanobacterial species, where they occur associated with phycobilisome in the cellular thylakoid membrane. These proteins function in photoprotection, and are essential for inhibiting white and blue-green light non-photochemical quenching (NPQ) [, ]. Carotenoids improve the photoprotectant activity by broadening OCP's absorption spectrum and facilitating the dissipation of absorbed energy. OCP acts as a homodimer, and binds one molecule of carotenoid (3'-hydroxyechinenone) and one chloride ion per subunit, where the carotenoid binding site is lined with a striking number of methionine residues. The carotenoid 3'-hydroxyechinenone is not found in higher plants. OCP has two domains: an N-terminal helical domain and a C-terminal domain that resembles a NTF2 (nuclear transport factor 2) domain. OCP can be proteolytically cleaved into a red form (RCP), which lacks 15 residues from the N terminus and approximately 150 residues from the C terminus []. This entry represents the N-terminal domain found predominantly in prokaryotic orange carotenoid proteins and related carotenoid-binding proteins. It adopts an alpha-helical structure consisting of two four-helix bundles [].; GO: 0031404 chloride ion binding, 0016037 light absorption, 0030089 phycobilisome; PDB: 3MG3_B 3MG1_A 3MG2_A 1M98_A.
Probab=63.87 E-value=13 Score=34.41 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH
Q psy9635 404 QGLLDNIYMLKPEQQLQLYYNLKQ 427 (439)
Q Consensus 404 ~~~~~~~~~l~~~~q~~l~~~l~~ 427 (439)
+.+++||++|++|||+++.+-|-+
T Consensus 59 e~ll~qik~ms~~EQlq~MrDL~~ 82 (159)
T PF09150_consen 59 EGLLNQIKQMSQEEQLQAMRDLAN 82 (159)
T ss_dssp HHHHHHHHCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHh
Confidence 779999999999999999887653
No 14
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=63.34 E-value=44 Score=32.99 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=34.2
Q ss_pred HHhhhhhHHHHHhhhcCCCCC-c----ccCC----CCchhHHHHHHHHHHHHHH
Q psy9635 238 MIVINDCMAYLCGFYFGRTPL-I----KLSP----KKTWEGFIGGAIFTVLLSI 282 (439)
Q Consensus 238 ~V~~nDt~AY~~G~~fGk~kL-~----~ISP----kKTwEG~IGG~v~t~i~g~ 282 (439)
..-..||+|==.|+..+|+|. + |+.| -=|++|.+.+++++.+++.
T Consensus 120 A~a~aDT~ASEiG~ls~~~p~lItt~k~V~~GT~GgVS~~Gt~As~~Ga~~I~~ 173 (237)
T TIGR00297 120 ATALSDTMASEIGKAYGKNPRLITTLQRVEPGTDGAISVEGTLAGFAGALAIAL 173 (237)
T ss_pred HHHHcchHHHhhhhccCCCCeEeecCccCCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 346889999999999999774 2 2333 2378899999998888774
No 15
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=62.91 E-value=38 Score=36.02 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhCCCccCCCCCCCCc
Q psy9635 334 FHTIVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHG 374 (439)
Q Consensus 334 ~~~l~l~l~~Svig~fGDL~eS~~KR~~gVKDsG~lIPGHG 374 (439)
+.+++++++++++..+ ..+.+|+..|+-|.=+.+|.||
T Consensus 281 ~~A~iiGii~g~i~~~---a~~~lk~~l~~DD~ld~f~vHG 318 (409)
T COG0004 281 WGALIIGLIAGVICYF---AVKLLKKKLGVDDALDVFGVHG 318 (409)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhcCCCCcccceeccc
Confidence 5688999998888754 4688999999999999999994
No 16
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=62.82 E-value=45 Score=32.66 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=37.0
Q ss_pred HHHhhhhhHHHHHhhhcCCCCCc----c-cCCC----CchhHHHHHHHHHHHHHHHHH
Q psy9635 237 SMIVINDCMAYLCGFYFGRTPLI----K-LSPK----KTWEGFIGGAIFTVLLSILLA 285 (439)
Q Consensus 237 ~~V~~nDt~AY~~G~~fGk~kL~----~-ISPk----KTwEG~IGG~v~t~i~g~~~~ 285 (439)
...-..||+|==.|...+++|.. | +.|- =|++|.+.|++++.+++....
T Consensus 114 ~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga~~Ia~~~~ 171 (226)
T PF01940_consen 114 IAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSGGVSLLGTLASLAGALLIALVAF 171 (226)
T ss_pred HHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCCeechHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999988852 2 3222 279999999999988877644
No 17
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=60.31 E-value=15 Score=39.03 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhCCCccCCCCCCCCc
Q psy9635 334 FHTIVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHG 374 (439)
Q Consensus 334 ~~~l~l~l~~Svig~fGDL~eS~~KR~~gVKDsG~lIPGHG 374 (439)
+.++++|++++++..++-- ++|.+||-|--+.+|=||
T Consensus 294 ~~A~iiG~iag~v~~~~~~----~~~~~~iDD~~~~~~vHg 330 (404)
T TIGR03644 294 LAATLIGAVGGVIVVFSIV----LLDKLKIDDPVGAISVHG 330 (404)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhCCCCCCcCchHhhh
Confidence 6789999999999887653 456799999999999994
No 18
>COG1836 Predicted membrane protein [Function unknown]
Probab=58.43 E-value=35 Score=33.80 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=34.5
Q ss_pred HhhhhhHHHHHhhhcCCCCC-c----ccCCC----CchhHHHHHHHHHHHHHHH
Q psy9635 239 IVINDCMAYLCGFYFGRTPL-I----KLSPK----KTWEGFIGGAIFTVLLSIL 283 (439)
Q Consensus 239 V~~nDt~AY~~G~~fGk~kL-~----~ISPk----KTwEG~IGG~v~t~i~g~~ 283 (439)
+.-.||+|-=.|+.+||+|. + |+-|. =|++|-+.|++++.+.+.+
T Consensus 130 ta~aDT~ASEiG~~~~~~p~lITtfkrV~~Gt~GaVS~~GelAav~Ga~iIal~ 183 (247)
T COG1836 130 TANADTLASEIGKAYGKRPRLITTFKRVEPGTSGAVSLVGELAAVAGAFIIALL 183 (247)
T ss_pred HHhhhHHHHHHhHhhCCCeEEEEeeeEcCCCCCCccchhhhHHHHHHHHHHHHH
Confidence 56889999999999999885 2 33332 3788988888888876553
No 19
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=48.47 E-value=58 Score=28.23 Aligned_cols=30 Identities=10% Similarity=0.208 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhh--chhhHHHHHhhhhCCCcc
Q psy9635 336 TIVISIFASLIG--PFGGFFASGFKRAFNIKD 365 (439)
Q Consensus 336 ~l~l~l~~Svig--~fGDL~eS~~KR~~gVKD 365 (439)
+.++|.++.++| .++++..+.+.|.+|++|
T Consensus 76 a~~~g~~IGflGvd~ir~~~~~~i~kK~g~~~ 107 (107)
T TIGR01594 76 SPFLGGMIGFVGVDKIREFAKRFINKKAGVDD 107 (107)
T ss_pred HHHHhhheeeccHHHHHHHHHHHHHhhcCCCC
Confidence 345566666665 477899999999999887
No 20
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=47.56 E-value=27 Score=32.34 Aligned_cols=25 Identities=12% Similarity=-0.011 Sum_probs=14.0
Q ss_pred hHhHHH---HHHHHHHHHHHHHHHHHHH
Q psy9635 68 SEAYQN---ALIRVIFTILMLGFYVTLI 92 (439)
Q Consensus 68 ~~r~~n---l~~R~isa~imi~~f~~ii 92 (439)
.+|.+| |.....|++.++.++++++
T Consensus 82 gERl~allsWrdP~aT~lf~~~clv~av 109 (156)
T PF08372_consen 82 GERLQALLSWRDPRATALFVVFCLVAAV 109 (156)
T ss_pred HHHHHHhhccCCccHHHHHHHHHHHHHH
Confidence 556664 4445667766665554443
No 21
>KOG1440|consensus
Probab=42.02 E-value=10 Score=40.14 Aligned_cols=47 Identities=21% Similarity=0.087 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhcCCCCCcccCCCCchhHHHHHHHHH
Q psy9635 231 WFILPVSMIVINDCMAYLCGFYFGRTPLIKLSPKKTWEGFIGGAIFT 277 (439)
Q Consensus 231 wfi~~~~~V~~nDt~AY~~G~~fGk~kL~~ISPkKTwEG~IGG~v~t 277 (439)
-+.+.++.|.++|+++-.-++-+++++....+|||+||+..-++.+.
T Consensus 269 v~~i~~s~vL~~~~~~~cp~~d~~t~~~~~c~p~~~F~~~~y~lp~~ 315 (432)
T KOG1440|consen 269 VFGILFSYVLGHYTFFTCPVKDFSTTPLLSCEPKPLFEPQTYGLPGV 315 (432)
T ss_pred HHHHHHHHHhccCeEEEecccccCCCCccccCcccccCcceecCCce
Confidence 34445667889999999999999999977999999999987665443
No 22
>PRK10666 ammonium transporter; Provisional
Probab=41.49 E-value=15 Score=39.33 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhCCCccCCCCCCCCc
Q psy9635 334 FHTIVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHG 374 (439)
Q Consensus 334 ~~~l~l~l~~Svig~fGDL~eS~~KR~~gVKDsG~lIPGHG 374 (439)
+.++++|++++++..++- ..+||.+||-|--+.+|=||
T Consensus 304 ~~A~iiG~vag~v~~~~~---~~l~~~~~iDD~~~a~~vHg 341 (428)
T PRK10666 304 GGALIIGVVAGLAGLWGV---TMLKRWLRVDDPCDVFGVHG 341 (428)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHhcCCCCCCcCccHhhh
Confidence 578999999999987664 34788899999999999994
No 23
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=39.26 E-value=16 Score=38.81 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhCCCccCCCCCCCCc
Q psy9635 334 FHTIVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHG 374 (439)
Q Consensus 334 ~~~l~l~l~~Svig~fGDL~eS~~KR~~gVKDsG~lIPGHG 374 (439)
+.++++|++++++..+|- ..+||.+||-|--+.+|=||
T Consensus 280 ~~A~viG~iag~~~~~~~---~~l~~~~~iDD~~~~~~vHg 317 (403)
T TIGR00836 280 WGAIIIGLVAGVLCYLAV---SKLKKKLKIDDPLDAFAVHG 317 (403)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHcCCCCCcccchhhh
Confidence 578899999988887665 34788899999999999884
No 24
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=36.81 E-value=36 Score=30.06 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=14.7
Q ss_pred cCCCCCCCCCCCCCCCCCC
Q psy9635 11 TNAASGDASATPSTEANKP 29 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~ 29 (439)
+|+-|..|.+++++.+-++
T Consensus 17 t~l~p~aalasgt~~t~~a 35 (126)
T PF03229_consen 17 TNLTPNAALASGTTTTAAA 35 (126)
T ss_pred HhcCcchhhhcCCcccccc
Confidence 6788888888888866555
No 25
>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.
Probab=34.92 E-value=1e+02 Score=27.49 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=39.8
Q ss_pred hhHHHHHhhhhCCCccCCC---CCCCCcc--------hhhhhhhhhhHHHHHHHHHHHHhc--cCCHHHHHHHHhCCChH
Q psy9635 350 GGFFASGFKRAFNIKDFSD---IIPGHGG--------LIDRFDCQFLMSTFVYVYIYTFIY--RNTIQGLLDNIYMLKPE 416 (439)
Q Consensus 350 GDL~eS~~KR~~gVKDsG~---lIPGHGG--------ILDRfDs~ll~a~~v~~yl~~fi~--~~~~~~~~~~~~~l~~~ 416 (439)
.|++...+--..|-.|+.+ .++||+| +++.+=+.++++.++|+.+...-+ +....+-.+ .=.++
T Consensus 36 ~dii~Pli~~~~g~~~~~~~~~~~~g~~~~~~i~yG~Fl~a~I~FlIiA~vvFlivk~~nk~~~~~~~~~~~---~~~~~ 112 (128)
T PF01741_consen 36 NDIIMPLIGLLFGGPDFSDLFIVLSGPAGAVVIPYGAFLNALINFLIIAFVVFLIVKPINKLKKKEEKEEAE---APAPK 112 (128)
T ss_dssp HHCHHHHHHHSCS-S--EE----TTS-SS-EEE-HCHHHHHHHHHHHHHHHHHHCHHHHHHCHHTT-S-------H--HH
T ss_pred HHHHHHHHHHhcCCCCcccceeeeeccCCcceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC---CCCCC
Confidence 4666666665555555554 4556644 555555556666666443322211 111110000 12366
Q ss_pred HHHHHHHHHHHHHHhc
Q psy9635 417 QQLQLYYNLKQDLIAR 432 (439)
Q Consensus 417 ~q~~l~~~l~~~~~~~ 432 (439)
+|.++++.+++.|.+|
T Consensus 113 ~~~~ll~eIrdlL~~q 128 (128)
T PF01741_consen 113 TCEELLTEIRDLLKKQ 128 (128)
T ss_dssp HHHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHHHhcC
Confidence 8999999999999875
No 26
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=34.54 E-value=1.6e+02 Score=28.09 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=24.8
Q ss_pred ccccCCCCCCchhhhhhh---hchHhHHHHHHHHHH-HHHH
Q psy9635 48 SKQIKQGTNKVPGFIAQY---IQSEAYQNALIRVIF-TILM 84 (439)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~---~~~~r~~nl~~R~is-a~im 84 (439)
.+..|++.+..|..+++. ++.+.-+++.+|... ++++
T Consensus 65 ~~~~~~~~~~~p~wl~~~~~~~~~P~~~~l~~~~~~f~~L~ 105 (194)
T PF11833_consen 65 KPPNPKPSNPSPPWLQRLLPSFDTPSSQDLLIRAAAFGALG 105 (194)
T ss_pred cccCCCCCCccchHHHhcccceeCCCcchHHHHHHHHHHHH
Confidence 445566677778788877 667777788888665 4333
No 27
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=34.14 E-value=5.4e+02 Score=26.50 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=22.8
Q ss_pred ccccCCCCCCchhhhhhhhchHhHHHHHHHHHHHHHHHHHHHH
Q psy9635 48 SKQIKQGTNKVPGFIAQYIQSEAYQNALIRVIFTILMLGFYVT 90 (439)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~r~~nl~~R~isa~imi~~f~~ 90 (439)
.+++..|+.+.+..-++..+.+|+.| |+..-.+.+++...
T Consensus 66 ~~~v~~g~~~~~s~e~r~~~a~rlGn---klFiPal~i~v~a~ 105 (308)
T PF06166_consen 66 FGQVGIGSYKEPSEEEREASAKRLGN---KLFIPALLIPVVAV 105 (308)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHhcC---eehHHHHHHHHHHH
Confidence 55666666666655566666777777 43333344444433
No 28
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=33.91 E-value=2.2e+02 Score=31.34 Aligned_cols=100 Identities=21% Similarity=0.408 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccCCCccccccccccccchhccccc----ccccchhhHHHHHHHH-HHHH
Q psy9635 270 FIGGAIFTVLLSILLAFYLTKFDYFVCPVQFTDGKYSYVCEVGYIYRQQLYTVFN----KEFYTYPILFHTIVIS-IFAS 344 (439)
Q Consensus 270 ~IGG~v~t~i~g~~~~~~l~~~~~~~cp~~~~~~~~~~~c~~~~~f~~~~~~~~~----~~i~~~~~~~~~l~l~-l~~S 344 (439)
.++..+.++++|..+++.+.+++ +|| ....+.|+.+...+.+ .+..
T Consensus 65 a~~~~~ls~~lG~~~A~l~~r~~-----------------------------fpGr~~l~~l~~lPl~iP~~V~a~~~~~ 115 (540)
T COG1178 65 AVLVTLLSVVLGIPLAWLLSRYD-----------------------------FPGRRLLRWLLALPLVIPPFVVALAWIS 115 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----------------------------CChHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45666777788888888776542 333 1222334444444433 3577
Q ss_pred HhhchhhHHHHHhhhhCCCccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHhccCCHH
Q psy9635 345 LIGPFGGFFASGFKRAFNIKDFSDIIPGHGGLIDRFDCQFLMSTFVYVYIYTFIYRNTIQ 404 (439)
Q Consensus 345 vig~fGDL~eS~~KR~~gVKDsG~lIPGHGGILDRfDs~ll~a~~v~~yl~~fi~~~~~~ 404 (439)
+.|+-|.+- .++..+|...-- |-|.+|+. +=-.+...|.+|..+..-.++.+++
T Consensus 116 l~G~~G~~~--~l~~~~G~~~~~--iyg~~Gii--l~~~~~~~P~~~l~~~~al~~i~~~ 169 (540)
T COG1178 116 LFGPSGPLA--ALLELLGFESPS--IYGLGGIL--LALVFFNYPLAYLLVLAALETIPPS 169 (540)
T ss_pred HHCCCcHHH--HHHHHhcCCCcc--cccHHHHH--HHHHHHhccHHHHHHHHHHHhCChh
Confidence 888866544 888888886543 99999987 3344466777777777777666554
No 29
>PRK05415 hypothetical protein; Provisional
Probab=31.03 E-value=4.6e+02 Score=27.38 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=20.0
Q ss_pred hhhhhHHHHHhhhcCCCCCc-ccCCCCchhHHHHHHHHHHH
Q psy9635 240 VINDCMAYLCGFYFGRTPLI-KLSPKKTWEGFIGGAIFTVL 279 (439)
Q Consensus 240 ~~nDt~AY~~G~~fGk~kL~-~ISPkKTwEG~IGG~v~t~i 279 (439)
++.|...-..| +-|. ++| .|--||.+.|.+...+
T Consensus 273 ~~~~l~~~~l~-----~~l~~~ls-~r~~QGv~~G~lTarl 307 (341)
T PRK05415 273 LVDDLGMDWLS-----QDLAAKLS-ARAAQGVGNGLLTARL 307 (341)
T ss_pred HHHHHHHHHHh-----ccHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45555444333 2344 566 4667998888766654
No 30
>PRK10847 hypothetical protein; Provisional
Probab=30.96 E-value=29 Score=33.42 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=18.6
Q ss_pred HHHhhhhhHHHHHhhhcCCCCC
Q psy9635 237 SMIVINDCMAYLCGFYFGRTPL 258 (439)
Q Consensus 237 ~~V~~nDt~AY~~G~~fGk~kL 258 (439)
+-..+.|+.+|..||.+|++.+
T Consensus 80 ~Ga~lG~~i~Y~lGr~~G~~~l 101 (219)
T PRK10847 80 IAAIVGDAVNYTIGRLFGEKLF 101 (219)
T ss_pred HHHHHHHHHHHHHHHHhCHHHh
Confidence 4457999999999999998765
No 31
>TIGR00220 mscL large conductance mechanosensitive channel protein. Protein encodes a channel which opens in response to a membrane stretch force. Probably serves as an osmotic gauge. Carboxy terminus tends to be more divergent across species with a high degree of sequence conservation found at the N-terminus.
Probab=27.38 E-value=1.6e+02 Score=26.38 Aligned_cols=84 Identities=12% Similarity=0.112 Sum_probs=44.3
Q ss_pred hhhHHHHHhhhhCCCccCCCCCC---------CCcchhhhhhhhhhHHHHHHHHHHHHhccCCHHHHHHHHhCCChHHHH
Q psy9635 349 FGGFFASGFKRAFNIKDFSDIIP---------GHGGLIDRFDCQFLMSTFVYVYIYTFIYRNTIQGLLDNIYMLKPEQQL 419 (439)
Q Consensus 349 fGDL~eS~~KR~~gVKDsG~lIP---------GHGGILDRfDs~ll~a~~v~~yl~~fi~~~~~~~~~~~~~~l~~~~q~ 419 (439)
..|++.-.+---.|-+|+++... +-|-+++.+=..++++.++|+.+...-+-...++--..--.=.|++|.
T Consensus 35 v~diimP~I~~~~g~~~~~~~~~~l~~~~~~~~yG~fl~avInFlIiA~vvf~~vk~~~k~~~~~~~~~~~~~~~~~~~~ 114 (127)
T TIGR00220 35 VADIIMPLLGLLLGGIDFSGLSFTLQDAQAVGKYGEFIQNIINFLIIAFAIFMIIKAINKLRRKKKVEEEAAAEAPDAQE 114 (127)
T ss_pred HHHHHHhhhcccCCCCCcccceeeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCChHH
Confidence 34666666666667777775222 235556666666666666665543322110000000000001235677
Q ss_pred HHHHHHHHHHHhc
Q psy9635 420 QLYYNLKQDLIAR 432 (439)
Q Consensus 420 ~l~~~l~~~~~~~ 432 (439)
++++.+++.|.+|
T Consensus 115 ~lL~eIrd~L~~~ 127 (127)
T TIGR00220 115 NLLTEIRDLLKNQ 127 (127)
T ss_pred HHHHHHHHHHhcC
Confidence 8999999999754
No 32
>PTZ00206 amino acid transporter; Provisional
Probab=27.29 E-value=4.2e+02 Score=28.33 Aligned_cols=50 Identities=8% Similarity=-0.017 Sum_probs=25.5
Q ss_pred hHHHHHHHHH-HHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy9635 70 AYQNALIRVI-FTILMLGFYV-TLIWLGHIAIIVCIICVQVICFREIMTIGL 119 (439)
Q Consensus 70 r~~nl~~R~i-sa~imi~~f~-~ii~~G~~~l~ilv~~i~~~~~~E~i~i~~ 119 (439)
..-|+.+-.+ ++++.+|... -.-+..+..+.+++.+++..+.+.+.+..+
T Consensus 65 s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~ 116 (467)
T PTZ00206 65 SAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAAD 116 (467)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3447666665 4455555443 112233334444555566666777665543
No 33
>PRK02868 hypothetical protein; Provisional
Probab=26.35 E-value=53 Score=32.64 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=16.4
Q ss_pred HHHHHHhCCChHHHHHHHHH
Q psy9635 405 GLLDNIYMLKPEQQLQLYYN 424 (439)
Q Consensus 405 ~~~~~~~~l~~~~q~~l~~~ 424 (439)
.+.+-++||+||||..+++.
T Consensus 59 ~l~~~v~~ms~eqq~~ll~~ 78 (245)
T PRK02868 59 GLFELVQNMSPEQQQILLKA 78 (245)
T ss_pred cHHHHHHhCCHHHHHHHHHH
Confidence 46677788999999999864
No 34
>PF04868 PDE6_gamma: Retinal cGMP phosphodiesterase, gamma subunit; InterPro: IPR006952 Retinal rod and cone cGMP phosphodiesterases function as the effector enzymes in the vertebrate visual transduction cascade. This family represents the inhibitory gamma subunit [], which is also expressed outside retinal tissues and has been shown to interact with the G-protein-coupled receptor kinase 2 signalling system to regulate the epidermal growth factor- and thrombin-dependent stimulation of p42/p44 mitogen-activated protein kinase in human embryonic kidney 293 cells [].; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0030553 cGMP binding, 0007601 visual perception; PDB: 2JU4_A 1FQJ_C 3JWR_D.
Probab=26.32 E-value=40 Score=27.61 Aligned_cols=18 Identities=44% Similarity=0.630 Sum_probs=12.7
Q ss_pred CCCccCCCCCCCCcchhh
Q psy9635 361 FNIKDFSDIIPGHGGLID 378 (439)
Q Consensus 361 ~gVKDsG~lIPGHGGILD 378 (439)
-|||-||+-|||+-|+-+
T Consensus 41 kGvkGf~~~ipgmeglg~ 58 (83)
T PF04868_consen 41 KGVKGFGDDIPGMEGLGT 58 (83)
T ss_dssp SSSS--TTSSSSSTT-SH
T ss_pred CcccCccCcCcccccccC
Confidence 479999999999998854
No 35
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=24.88 E-value=59 Score=26.79 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.3
Q ss_pred HHhhhcCCCCCc--ccCCCCc
Q psy9635 248 LCGFYFGRTPLI--KLSPKKT 266 (439)
Q Consensus 248 ~~G~~fGk~kL~--~ISPkKT 266 (439)
-.|+..||+++. .+-||.|
T Consensus 22 ~iG~kvGKkrlslFgLRPr~T 42 (79)
T PF11283_consen 22 RIGSKVGKKRLSLFGLRPRYT 42 (79)
T ss_pred HHHHHHhHHHhhhhcCCCccc
Confidence 368899999984 8999999
No 36
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=24.42 E-value=49 Score=25.67 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=17.6
Q ss_pred CChHHHHHHHHHHHHHHHhcccC
Q psy9635 413 LKPEQQLQLYYNLKQDLIARDIL 435 (439)
Q Consensus 413 l~~~~q~~l~~~l~~~~~~~~~~ 435 (439)
-+.|||++|++.++..+.++-++
T Consensus 29 ysie~Q~~L~~~ik~~F~~~P~i 51 (58)
T PF06858_consen 29 YSIEEQLSLFKEIKPLFPNKPVI 51 (58)
T ss_dssp S-HHHHHHHHHHHHHHTTTS-EE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEE
Confidence 36899999999999988766543
No 37
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=22.56 E-value=2.8e+02 Score=19.98 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9635 77 RVIFTILMLGFYVTLIWLGHIAIIVCIICVQVICFREIMTIGLT 120 (439)
Q Consensus 77 R~isa~imi~~f~~ii~~G~~~l~ilv~~i~~~~~~E~i~i~~~ 120 (439)
-..++++|+|++..++ +|- +.++-|..|+..+
T Consensus 4 Sl~fa~iMVPVvma~i-lgl-----------IyGlGevfN~iS~ 35 (41)
T PF10766_consen 4 SLAFAVIMVPVVMALI-LGL-----------IYGLGEVFNLISK 35 (41)
T ss_pred HHHHHHHHHHHHHHHH-HHH-----------HHHHHHHHHHHHh
Confidence 4567889999877655 343 3466777776543
No 38
>PF09920 DUF2150: Uncharacterized protein conserved in archaea (DUF2150); InterPro: IPR014518 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.40 E-value=52 Score=31.46 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=12.3
Q ss_pred chHhHHHHHHHHHHH
Q psy9635 67 QSEAYQNALIRVIFT 81 (439)
Q Consensus 67 ~~~r~~nl~~R~isa 81 (439)
+..||+||+.|+--+
T Consensus 5 tqeRW~NWi~~lkE~ 19 (190)
T PF09920_consen 5 TQERWQNWINRLKES 19 (190)
T ss_pred cHHHHHHHHHHHHHc
Confidence 578999999997654
No 39
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=22.06 E-value=45 Score=28.04 Aligned_cols=29 Identities=48% Similarity=0.661 Sum_probs=21.1
Q ss_pred HHHhhhhhHHHHHhhhcCCCCCc-ccCCCC
Q psy9635 237 SMIVINDCMAYLCGFYFGRTPLI-KLSPKK 265 (439)
Q Consensus 237 ~~V~~nDt~AY~~G~~fGk~kL~-~ISPkK 265 (439)
+-....|..+|..||.+|++.+. +.-.+|
T Consensus 25 ~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~ 54 (123)
T PF09335_consen 25 LGAVLGSLLAYLLGRYFGRRRLRRKLRKKK 54 (123)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcchH
Confidence 34568999999999999976654 443333
No 40
>KOG4037|consensus
Probab=21.57 E-value=1.2e+02 Score=28.84 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=18.5
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy9635 11 TNAASGDASATPSTEANKPASSSSSDVDND 40 (439)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (439)
+.+++|++.+.++-+.+.+++++++..+.|
T Consensus 15 ~Saa~gS~~s~s~ip~p~~~~~s~~~~~~~ 44 (240)
T KOG4037|consen 15 ESAAGGSGQSVSPIPQPPAESESGSESEPD 44 (240)
T ss_pred cccCCCCCCCCCCCCCCCcccCCCCCCCCC
Confidence 445666777776666666666666555443
No 41
>PF14163 SieB: Superinfection exclusion protein B
Probab=21.31 E-value=1.7e+02 Score=26.21 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=18.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH
Q psy9635 404 QGLLDNIYMLKPEQQLQLYYNLKQ 427 (439)
Q Consensus 404 ~~~~~~~~~l~~~~q~~l~~~l~~ 427 (439)
+++-+.+.+|+++|+.-|.+-+++
T Consensus 70 ~~~~~~l~~Lt~~EkavL~~~~~~ 93 (151)
T PF14163_consen 70 KKIEKKLNSLTPEEKAVLREFYIQ 93 (151)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHC
Confidence 345567789999999888766654
No 42
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=21.19 E-value=56 Score=39.37 Aligned_cols=10 Identities=10% Similarity=0.142 Sum_probs=5.1
Q ss_pred HHHHHHhhhh
Q psy9635 111 FREIMTIGLT 120 (439)
Q Consensus 111 ~~E~i~i~~~ 120 (439)
+.|-.+|.++
T Consensus 952 mqEAKrLKHk 961 (1191)
T PF05110_consen 952 MQEAKRLKHK 961 (1191)
T ss_pred HHHHHHHHHH
Confidence 3455555544
No 43
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=20.48 E-value=93 Score=24.04 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.2
Q ss_pred hCCChHHHHHHHHHHHHHHHhc
Q psy9635 411 YMLKPEQQLQLYYNLKQDLIAR 432 (439)
Q Consensus 411 ~~l~~~~q~~l~~~l~~~~~~~ 432 (439)
.+|+++|++.|++.|=++|.+.
T Consensus 1 ~~L~~~ERl~Lve~LwdSL~~~ 22 (63)
T TIGR02574 1 LALSPDERIQLVEDIWDSIAAE 22 (63)
T ss_pred CCCCHHHHHHHHHHHHHHhccC
Confidence 3699999999999999999843
Done!