Query psy9635
Match_columns 439
No_of_seqs 204 out of 1416
Neff 5.9
Searched_HMMs 13730
Date Sat Aug 17 00:45:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9635.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9635hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m98a1 a.175.1.1 (A:2-175) Or 56.3 3.2 0.00023 35.4 3.0 24 404-427 64-87 (174)
2 d2p97a1 d.157.1.12 (A:1-200) H 39.1 4.5 0.00033 34.2 1.2 30 353-382 160-194 (200)
3 d1zavu1 a.108.1.1 (U:1-30) Rib 33.2 23 0.0017 21.0 3.4 27 402-428 2-28 (30)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 25.7 2.8 0.00021 40.1 -2.8 38 334-374 280-317 (383)
5 d1ycga2 d.157.1.3 (A:2-250) Ni 24.9 10 0.00076 32.3 1.1 36 342-377 195-231 (249)
6 d1wixa_ a.40.3.1 (A:) Hook hom 23.2 75 0.0055 26.0 6.4 41 393-433 120-160 (164)
7 d1vmea2 d.157.1.3 (A:1-250) RO 23.1 17 0.0012 30.9 2.1 35 342-377 198-232 (250)
8 d2q0ia1 d.157.1.14 (A:1-298) Q 21.0 10 0.00075 33.4 0.2 24 355-378 203-226 (298)
9 d1bk8a_ g.3.7.5 (A:) Antimicro 17.7 8 0.00058 26.1 -1.0 11 263-273 6-16 (50)
10 d1m2xa_ d.157.1.1 (A:) Zn meta 15.7 15 0.0011 30.3 -0.1 16 364-379 187-202 (219)
No 1
>d1m98a1 a.175.1.1 (A:2-175) Orange carotenoid protein, N-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=56.26 E-value=3.2 Score=35.41 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH
Q psy9635 404 QGLLDNIYMLKPEQQLQLYYNLKQ 427 (439)
Q Consensus 404 ~~~~~~~~~l~~~~q~~l~~~l~~ 427 (439)
+.+++||++|++|||+++.+-|-+
T Consensus 64 e~ll~qik~ms~~EQlq~MrDL~~ 87 (174)
T d1m98a1 64 ENTLQEIRQMTPLQQTQAMCDLAN 87 (174)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHh
Confidence 779999999999999999877643
No 2
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]}
Probab=39.15 E-value=4.5 Score=34.21 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=23.3
Q ss_pred HHHHhhhhCCCccCCCCCCCCcch-----hhhhhh
Q psy9635 353 FASGFKRAFNIKDFSDIIPGHGGL-----IDRFDC 382 (439)
Q Consensus 353 ~eS~~KR~~gVKDsG~lIPGHGGI-----LDRfDs 382 (439)
....+||-...+|+-.++||||.. -+|++.
T Consensus 160 ~~~sl~rl~~l~~~~~i~pgHG~~~~~~~~~rl~~ 194 (200)
T d2p97a1 160 VVASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKE 194 (200)
T ss_dssp HHHHHHHHHTCTTCCEEEESBBCCBCSCHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEECCCCchHhcCHHHHHHH
Confidence 346688988999999999999954 345555
No 3
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=33.18 E-value=23 Score=20.97 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.3
Q ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy9635 402 TIQGLLDNIYMLKPEQQLQLYYNLKQD 428 (439)
Q Consensus 402 ~~~~~~~~~~~l~~~~q~~l~~~l~~~ 428 (439)
+.++++..|-+|+..|-.+|.++|.+-
T Consensus 2 ~~eeiv~aiekltvaelaelvk~ledk 28 (30)
T d1zavu1 2 TIDEIIEAIEKLTVSELAELVKKLEDK 28 (30)
T ss_dssp CHHHHHHHHHHSBHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 467889999999999999999998863
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=25.68 E-value=2.8 Score=40.06 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhCCCccCCCCCCCCc
Q psy9635 334 FHTIVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHG 374 (439)
Q Consensus 334 ~~~l~l~l~~Svig~fGDL~eS~~KR~~gVKDsG~lIPGHG 374 (439)
+.+++++++++++..++- ..+||.+|+-|--+.+|=||
T Consensus 280 ~~A~~iG~i~g~i~~~~~---~~l~~~~~iDD~~~~~~vHg 317 (383)
T d1u7ga_ 280 GGALIIGVVAGLAGLWGV---TMLKRLLRVDDPCDVFGVHG 317 (383)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHCSCCGGGHHHHHH
T ss_pred hhHHHHHhhccHHHHHHH---HHHHhhcccccccceEeehh
Confidence 578899999999888773 45788899999999999994
No 5
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]}
Probab=24.90 E-value=10 Score=32.29 Aligned_cols=36 Identities=22% Similarity=0.481 Sum_probs=26.6
Q ss_pred HHHHhhchhhHHHHHhhhhCCC-ccCCCCCCCCcchh
Q psy9635 342 FASLIGPFGGFFASGFKRAFNI-KDFSDIIPGHGGLI 377 (439)
Q Consensus 342 ~~Svig~fGDL~eS~~KR~~gV-KDsG~lIPGHGGIL 377 (439)
+..+.+++..-+.+.+||-..+ -|...++||||.++
T Consensus 195 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~i~PgHGpv~ 231 (249)
T d1ycga2 195 YANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIW 231 (249)
T ss_dssp HHHHTGGGHHHHHHHHHHHHHTTCCCSEEEESSSCBB
T ss_pred chhccccCHHHHHHHHHHHHccCCCCCEEEeCCCchH
Confidence 4566788888888899986544 13346889999887
No 6
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.23 E-value=75 Score=25.97 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=34.4
Q ss_pred HHHHHhccCCHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Q psy9635 393 YIYTFIYRNTIQGLLDNIYMLKPEQQLQLYYNLKQDLIARD 433 (439)
Q Consensus 393 yl~~fi~~~~~~~~~~~~~~l~~~~q~~l~~~l~~~~~~~~ 433 (439)
.+.-.+.+++.++.++.|++|+.+.|..+.+.+++.-++++
T Consensus 120 iLg~AV~c~~ke~~I~~I~~Ld~~tQ~~im~~Iqev~~~~~ 160 (164)
T d1wixa_ 120 ILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKSG 160 (164)
T ss_dssp HHHHTTSSSTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCchHHHHHHHHcCCHHHHHHHHHHHHHHHhccC
Confidence 33445688999999999999999999999999998776653
No 7
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.11 E-value=17 Score=30.87 Aligned_cols=35 Identities=20% Similarity=0.587 Sum_probs=24.3
Q ss_pred HHHHhhchhhHHHHHhhhhCCCccCCCCCCCCcchh
Q psy9635 342 FASLIGPFGGFFASGFKRAFNIKDFSDIIPGHGGLI 377 (439)
Q Consensus 342 ~~Svig~fGDL~eS~~KR~~gVKDsG~lIPGHGGIL 377 (439)
.....++.-+-...++||-.+. |...++||||=++
T Consensus 198 ~~~~~~~~~~~~~~sl~~l~~l-~~~~I~PGHGpi~ 232 (250)
T d1vmea2 198 IVTVIGHYKNYILEGAEKLSSL-KIKALLPGHGLIW 232 (250)
T ss_dssp HHHHHGGGHHHHHHHHHHHHTS-CCSEEEESSSCBB
T ss_pred hcccccccHHHHHHHHHHHHCC-CCCEEECCCChhH
Confidence 3444556666666778886555 5668999999776
No 8
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.00 E-value=10 Score=33.45 Aligned_cols=24 Identities=33% Similarity=0.760 Sum_probs=16.9
Q ss_pred HHhhhhCCCccCCCCCCCCcchhh
Q psy9635 355 SGFKRAFNIKDFSDIIPGHGGLID 378 (439)
Q Consensus 355 S~~KR~~gVKDsG~lIPGHGGILD 378 (439)
..++|-....|--.++||||++++
T Consensus 203 ~sl~~l~~l~~~~~i~PgHG~~~~ 226 (298)
T d2q0ia1 203 ESLERLQRLPTLLQLIPGHGGLLR 226 (298)
T ss_dssp HHHHHHHTSSCCSEEEESSSCEEE
T ss_pred HHHHHHHCCCCCCEEECCCCCccC
Confidence 345666666555568999999874
No 9
>d1bk8a_ g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Horse chestnut (Aesculus hippocastanum) [TaxId: 43364]}
Probab=17.66 E-value=8 Score=26.09 Aligned_cols=11 Identities=45% Similarity=1.075 Sum_probs=8.8
Q ss_pred CCCchhHHHHH
Q psy9635 263 PKKTWEGFIGG 273 (439)
Q Consensus 263 PkKTwEG~IGG 273 (439)
|.|||.|+-|-
T Consensus 6 ~S~TWsG~Cgn 16 (50)
T d1bk8a_ 6 PSQTWSGNCGN 16 (50)
T ss_dssp CCSSSCSCCCC
T ss_pred CCCceeeccCC
Confidence 78999997664
No 10
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}
Probab=15.66 E-value=15 Score=30.35 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=12.9
Q ss_pred ccCCCCCCCCcchhhh
Q psy9635 364 KDFSDIIPGHGGLIDR 379 (439)
Q Consensus 364 KDsG~lIPGHGGILDR 379 (439)
.|.-.++||||.+.|+
T Consensus 187 ~~~~~i~pgHg~~~~~ 202 (219)
T d1m2xa_ 187 SGAQYVVAGHDDWKDQ 202 (219)
T ss_dssp TTCSEEEESBSCCCST
T ss_pred CCCcEEECCCCCccCh
Confidence 3667899999998875
Done!