BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9636
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24251|ATP5H_DROME ATP synthase subunit d, mitochondrial OS=Drosophila melanogaster
GN=ATPsyn-d PE=2 SV=2
Length = 178
Score = 163 bits (412), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 112/171 (65%), Gaps = 1/171 (0%)
Query: 1 MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
MAARR S INWS L R+ + +F FK K D Y+R V A PE PP+IDWA YK
Sbjct: 1 MAARRIAQSSINWSALAERVPANQKSSFGAFKTKSDIYVRAVLANPECPPQIDWANYKKL 60
Query: 61 IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
+PV GLVD FQKQYEAL++P+PQD +++++ E K + +EI + + S+ RI Y+KEI
Sbjct: 61 VPVAGLVDSFQKQYEALKVPYPQDKVSSQVDAEIKASQSEIDAYKKASEQRIQNYQKEIA 120
Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDP-EKPTFWPHDEENQITKEDEEWWE 170
++L P +MTM++Y A+P+ A DP KPTFWPH E Q+ + +E E
Sbjct: 121 HLKSLLPYDQMTMEDYRDAFPDSALDPLNKPTFWPHTPEEQVGYKSKEQLE 171
>sp|O75947|ATP5H_HUMAN ATP synthase subunit d, mitochondrial OS=Homo sapiens GN=ATP5H PE=1
SV=3
Length = 161
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 90/155 (58%)
Query: 1 MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
MA R+ I+W + + ++ K+ + +++ALPE PP IDWA YK
Sbjct: 1 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
Query: 61 IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
+ GLVD F+K++ AL++P P+D TA+++ EEK+ + +W+ S+ RI Y+KE+E
Sbjct: 61 VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME 120
Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPH 155
+ L P +MT+++ A+PE D +K +WPH
Sbjct: 121 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPH 155
>sp|Q9DCX2|ATP5H_MOUSE ATP synthase subunit d, mitochondrial OS=Mus musculus GN=Atp5h PE=1
SV=3
Length = 161
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 88/155 (56%)
Query: 1 MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
MA R+ I+W + + N K+ + + ++++L E PP IDWA Y+
Sbjct: 1 MAGRKLALKTIDWVSFVEVMPQNQKAIGNALKSWNETFHARLASLSEKPPAIDWAYYRAN 60
Query: 61 IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
+ PGLVD F+K+Y AL+IP P+D TA +++EEK+ + +++ SQ+RI Y+K++E
Sbjct: 61 VAKPGLVDDFEKKYNALKIPVPEDKYTALVDQEEKEDVKSCAEFVSGSQLRIQEYEKQLE 120
Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPH 155
+ P +MT+ + +PE D +K +WPH
Sbjct: 121 KMRNIIPFDQMTIDDLNEIFPETKLDKKKYPYWPH 155
>sp|P13620|ATP5H_BOVIN ATP synthase subunit d, mitochondrial OS=Bos taurus GN=ATP5H PE=1
SV=2
Length = 161
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 88/155 (56%)
Query: 1 MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
MA R+ I+W + + N+ K+ + +++ LPE PP IDWA YK
Sbjct: 1 MAGRKLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKAN 60
Query: 61 IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
+ GLVD F+K++ AL++P P+D TA+++ EEK+ + +++ +S+ RI Y+KE+E
Sbjct: 61 VAKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELE 120
Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPH 155
+ P +MT+++ +PE D +K +WPH
Sbjct: 121 KMRNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPH 155
>sp|P31399|ATP5H_RAT ATP synthase subunit d, mitochondrial OS=Rattus norvegicus GN=Atp5h
PE=1 SV=3
Length = 161
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 85/155 (54%)
Query: 1 MAARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNK 60
MA R+ I+W + + N K+ + + ++++L E PP IDWA Y+
Sbjct: 1 MAGRKLALKTIDWVSFVEIMPQNQKAIGNALKSWNETFHTRLASLSEKPPAIDWAYYRAN 60
Query: 61 IPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
+ PGLVD F+ +Y AL+IP P+D TA ++ EEK+ + +++ SQ R+ Y+K++E
Sbjct: 61 VDKPGLVDDFKNKYNALKIPVPEDKYTALVDAEEKEDVKNCAQFVTGSQARVREYEKQLE 120
Query: 121 DEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPH 155
+ + P +MT+ + +PE D K +WPH
Sbjct: 121 KIKNMIPFDQMTIDDLNEVFPETKLDKRKYPYWPH 155
>sp|P0C2C8|ATP7_ASPTN ATP synthase subunit d, mitochondrial OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=atp7 PE=3 SV=1
Length = 173
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 8/148 (5%)
Query: 1 MAARRFTGSKINWSELTSRLT--DADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYK 58
MAAR KI+W ++TS L + FK + D RKV L E P +D+A Y+
Sbjct: 1 MAARS-AALKIDWVKVTSSLGLRGQTAASLQAFKKRNDDARRKVQILSEQPQTVDFAHYR 59
Query: 59 NKIPVPGLVDQFQKQYEALQ-IPFPQDTETAKINEEEKQTM--AEIKKWIEESQVRIAGY 115
+ +VD+ + Q++ + + + I E Q + AE K E+++R
Sbjct: 60 QILKNQAVVDEIENQFKNFKPATYDVSRQLKAIEAFEAQAVQNAEQTKGKVEAELR--NL 117
Query: 116 KKEIEDEEALPPVSEMTMQEYCLAYPEC 143
+K +E+ E P E+T+ E A PE
Sbjct: 118 QKTLENIETARPFDELTVDEVAAAQPEI 145
>sp|Q9FT52|ATP5H_ARATH ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana
GN=At3g52300 PE=1 SV=3
Length = 168
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 1 MAARRFTGSK-INWSELTSRL-TDADRPNFNTFKAKYDGYLRKV-SALPEAPPKIDWALY 57
+A F S+ I+W + L TD R F+ + +D ++ + + P IDW Y
Sbjct: 8 IADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYY 67
Query: 58 KNKIPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKK 117
+ I G+VD++++ Y++++IP D T + + + E+K+ ++S +K
Sbjct: 68 RKGIGA-GIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEK 126
Query: 118 EIED-EEALPPVSEMTMQEYCLAYPEC 143
EI D +E +S MT EY +PE
Sbjct: 127 EIADVQEISKKLSTMTADEYFEKHPEL 153
>sp|O13350|ATP7_KLULA ATP synthase subunit d, mitochondrial OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=ATP7 PE=3 SV=4
Length = 174
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Query: 1 MAARRFTGSKINWSELTS--RLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYK 58
M+ + +K++W+++ S +LT ++FK + D R++ L P +D++ Y+
Sbjct: 1 MSLAKSAANKLDWAKVISSLKLTGKTATQLSSFKKRNDEARRQLLELQSQPTSVDFSHYR 60
Query: 59 NKIPVPGLVD---QFQKQYEALQIPFPQDTETAKINEEEK-QTMAEIKKWIEESQVRIAG 114
+ + +VD QF K Y+ + + + T + E + + AE +K + + +
Sbjct: 61 SVLKNTEVVDKIEQFYKSYKPVSVDVSKQLSTIEAFESQAIENAAETEKLVAQ---ELKD 117
Query: 115 YKKEIEDEEALPPVSEMTMQEYCLAYPEC 143
K+ + + E+ P ++T+ E A PE
Sbjct: 118 LKETLNNIESARPFDQLTVDELTKARPEI 146
>sp|Q7SI16|ATP7_NEUCR ATP synthase subunit d, mitochondrial OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=atp-7 PE=3 SV=1
Length = 173
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 67/146 (45%), Gaps = 4/146 (2%)
Query: 1 MAARRFTGSKINWSELTSRLT--DADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYK 58
MAAR K++W+++T+ L + FK + D RK+ L E P +D+A Y+
Sbjct: 1 MAARN-AALKVDWAKITTSLGLRGQTAASLQAFKKRNDDARRKLQQLSELPTTVDFAAYR 59
Query: 59 NKIPVPGLVDQFQKQYEALQ-IPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKK 117
+ + +V++ +K++ + + + + + I E + + + + + + +K
Sbjct: 60 STLKNQAIVNEIEKRFTSFKPATYDVNRQLKAIEAFEVEAIKNAEATKTKVDLELKDLEK 119
Query: 118 EIEDEEALPPVSEMTMQEYCLAYPEC 143
+ + E P E+T+ E A P
Sbjct: 120 TLTNIETARPFDELTVDEVAAAEPSI 145
>sp|P30902|ATP7_YEAST ATP synthase subunit d, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ATP7 PE=1 SV=2
Length = 174
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Query: 1 MAARRFTGSKINWSELTS--RLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYK 58
M+ + +K++W+++ S R+T + ++FK + D R++ L P ++D++ Y+
Sbjct: 1 MSLAKSAANKLDWAKVISSLRITGSTATQLSSFKKRNDEARRQLLELQSQPTEVDFSHYR 60
Query: 59 NKIPVPGLVDQFQ---KQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGY 115
+ + ++D+ + KQY+ ++I + + I EK M K+ +
Sbjct: 61 SVLKNTSVIDKIESYVKQYKPVKIDASKQLQV--IESFEKHAMTNAKETESLVSKELKDL 118
Query: 116 KKEIEDEEALPPVSEMTMQEYCLAYPEC 143
+ +++ ++ P E+T+ + PE
Sbjct: 119 QSTLDNIQSARPFDELTVDDLTKIKPEI 146
>sp|O94390|ATP7_SCHPO ATP synthase subunit d, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=atp7 PE=3 SV=3
Length = 175
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 8 GSKINWSELTSRLT--DADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPG 65
G I+W+ + S+L A F++++ + K+ L E +D+A Y++ +
Sbjct: 9 GKAIDWASVASKLKLDAATASAIANFRSRHAQAVAKLGTLREQATTVDFATYRSVLANKE 68
Query: 66 LVDQFQKQYEALQ-IPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEA 124
+V++ + ++ + + +++ IN E + KK +E + + +++ E
Sbjct: 69 IVNRIESSMKSFKPVKIDLNSQLKAINAFEAKASEGAKKNVELVKAELQNLSATLKNIEQ 128
Query: 125 LPPVSEMTMQEYCLAYPEC 143
P E+T+++ A PE
Sbjct: 129 ARPTEEITIEDMKQAVPEI 147
>sp|Q0ZME3|NCAP_CVHN5 Nucleoprotein OS=Human coronavirus HKU1 (isolate N5) GN=N PE=3 SV=1
Length = 441
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 6 FTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALP 46
F GSK+ EL R +DAD P+ +TF+ +Y G +R S LP
Sbjct: 322 FFGSKL---ELFKRDSDADSPSKDTFELRYSGSIRFDSTLP 359
>sp|Q14EA6|NCAP_CVHN2 Nucleoprotein OS=Human coronavirus HKU1 (isolate N2) GN=N PE=3 SV=1
Length = 441
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 6 FTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALP 46
F GSK+ EL R +DAD P+ +TF+ +Y G +R S LP
Sbjct: 322 FFGSKL---ELFKRDSDADSPSKDTFELRYSGSIRFDSTLP 359
>sp|Q6P6S3|BSPRY_RAT B box and SPRY domain-containing protein OS=Rattus norvegicus
GN=Bspry PE=1 SV=2
Length = 448
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 30 TFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQ-FQKQYEALQIPFPQDTETA 88
T +A +D LRK+ +L + +D + N + + + + ++ EA I PQ++E
Sbjct: 191 TQRAHWDDKLRKLDSLRTS--MVDMLTHLNDLQLIQMEQEILERAEEAEGILEPQESEKL 248
Query: 89 KINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLAYPE-----C 143
NE+ + + W ++G + + DE + P+ ++ L + C
Sbjct: 249 SFNEKCAWSPLLTQLWATSVLGSLSGMEDVLIDERTVGPLLNLSEDRKTLTFNAKKSKVC 308
Query: 144 AYDPEKPTFWP 154
+ DPE+ WP
Sbjct: 309 SDDPERFDHWP 319
>sp|P23598|PRTF_ERWCH Proteases secretion protein PrtF OS=Erwinia chrysanthemi GN=prtF
PE=3 SV=1
Length = 462
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 18 SRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKID---WALYKNKIPVPGLVDQ-FQKQ 73
S++T DR NT K YD Y VS L P +D WA Y+ + + DQ F+ +
Sbjct: 74 SKVTQRDRTLNNTTKRDYDNY---VSTLTLRQPLLDYAAWARYQQGVTRKLMADQRFRDR 130
Query: 74 YEALQIPFPQDTETAKINEEE 94
+ L + Q A + +E+
Sbjct: 131 SQDLMVRLYQSWSEALLAQEK 151
>sp|A4D0S4|LAMB4_HUMAN Laminin subunit beta-4 OS=Homo sapiens GN=LAMB4 PE=2 SV=1
Length = 1761
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 9 SKINWSELTSRL------TDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIP 62
SK N +L +L +D++ N N F K +L + + PE K+ + +P
Sbjct: 1453 SKNNALQLREKLGNIRNQSDSEEENINLFIKKVKNFLLEENVPPEDIEKVANGVLDIHLP 1512
Query: 63 VPG--LVDQFQKQYEALQIPFPQDTETAKINEE 93
+P L D+ K + +Q+ T+ ++NEE
Sbjct: 1513 IPSQNLTDELVKIQKHMQLCEDYRTDENRLNEE 1545
>sp|Q80YW5|BSPRY_MOUSE B box and SPRY domain-containing protein OS=Mus musculus GN=Bspry
PE=1 SV=1
Length = 473
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 70 FQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVS 129
F++ EA I PQD+E NE+ + + W ++G ++ + DE + P+
Sbjct: 232 FERAEEAEGILDPQDSEKLSFNEKCAWSPLLTQLWAASVLGSLSGVEEVLIDERTVSPLL 291
Query: 130 EMTMQEYCLAYPE-----CAYDPEKPTFWP 154
++ L + C+ +PE+ WP
Sbjct: 292 HLSEDRRTLTFIAKKSKVCSDEPERFDHWP 321
>sp|Q92459|FDFT_USTMA Squalene synthase OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=ERG9 PE=3 SV=2
Length = 572
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 63 VPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDE 122
+P LV+ Y+ L+ P TE+ NE+++Q + E K I E Q+ GYK I D
Sbjct: 101 IPLLVNF----YKYLEQPGWNFTESGP-NEKDRQLLVEFDKVIAEYQLLDVGYKTVISDI 155
Query: 123 EALPPVSEMTMQEYCLAYPEC-AYDPEKPTFWPH 155
A M +Y E A P K W H
Sbjct: 156 TA-------KMGAGMASYIELSAKGPLKVAMWKH 182
>sp|P42522|MYOC_DICDI Myosin IC heavy chain OS=Dictyostelium discoideum GN=myoC PE=4 SV=2
Length = 1182
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 134 QEYCLAYPECAYDPEKPTFWPHDEENQITKEDEEWWE 170
Q+Y Y A P++ TF +D N I K D +WW+
Sbjct: 1126 QQYIALYEYDAMQPDELTFKENDVINLIKKVDADWWQ 1162
>sp|A0AUJ5|POLG_BVY3 Genome polyprotein OS=Blackberry virus Y (isolate Blackberry
plant/USA: Arkansas/C3ARK/2005) PE=3 SV=1
Length = 3491
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 8 GSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVS-----ALPE-----APPKIDWALY 57
G + E S+L NF F A+ DGY +S ALP+ P +D+ +Y
Sbjct: 308 GDNKQFQEAQSKLQTKTTINFGEFAAEVDGYYPTLSQDHKPALPKIIPELGLPTVDF-IY 366
Query: 58 KNKIPVPGLVDQFQKQYEALQIPFPQDT--ETAKINEEEKQTMAEIKKWIEESQV 110
+ VP +D F+K +P DT AKI + + T IK + E+ +V
Sbjct: 367 VGNMRVP--ID-FKKN----NVPAIVDTARHVAKIIDSQALTSEPIKVFTEQREV 414
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,068,543
Number of Sequences: 539616
Number of extensions: 3255090
Number of successful extensions: 9640
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 9564
Number of HSP's gapped (non-prelim): 129
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)