Query psy9636
Match_columns 181
No_of_seqs 111 out of 226
Neff 5.5
Searched_HMMs 46136
Date Sat Aug 17 00:46:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05873 Mt_ATP-synt_D: ATP sy 100.0 4.2E-64 9.1E-69 404.5 11.3 160 2-161 1-161 (161)
2 KOG3366|consensus 100.0 9.7E-55 2.1E-59 350.2 14.2 162 1-162 1-166 (172)
3 PF15348 GEMIN8: Gemini of Caj 78.0 2.5 5.4E-05 35.8 3.3 40 101-158 168-207 (209)
4 PF10444 Nbl1_Borealin_N: Nbl1 74.2 10 0.00022 25.5 4.9 52 89-140 6-59 (59)
5 PLN00204 CP12 gene family prot 73.8 14 0.00031 29.0 6.3 55 90-145 57-120 (126)
6 TIGR03545 conserved hypothetic 70.8 46 0.00099 32.1 10.2 103 14-126 152-260 (555)
7 KOG3366|consensus 68.1 37 0.0008 28.1 7.8 89 9-127 51-143 (172)
8 PF09177 Syntaxin-6_N: Syntaxi 54.4 38 0.00082 24.6 5.1 66 66-137 13-80 (97)
9 PF05508 Ran-binding: RanGTP-b 53.8 88 0.0019 28.1 8.2 98 14-133 33-145 (302)
10 PLN02372 violaxanthin de-epoxi 53.3 53 0.0011 30.9 6.9 26 51-77 343-373 (455)
11 COG4197 Uncharacterized protei 46.5 8.8 0.00019 28.8 0.7 13 50-62 62-74 (96)
12 PTZ00200 cysteine proteinase; 45.0 1.1E+02 0.0024 28.6 7.9 112 21-144 66-189 (448)
13 PF09424 YqeY: Yqey-like prote 44.1 1.1E+02 0.0025 24.0 6.7 59 80-139 40-99 (143)
14 PF08248 Tryp_FSAP: Tryptophyl 43.9 12 0.00026 17.8 0.7 6 149-155 2-7 (12)
15 PF02520 DUF148: Domain of unk 43.4 1.3E+02 0.0029 22.1 6.7 79 57-138 7-86 (113)
16 PF07106 TBPIP: Tat binding pr 42.8 45 0.00098 26.4 4.3 34 98-131 81-114 (169)
17 PF06698 DUF1192: Protein of u 42.2 22 0.00049 24.3 2.1 18 107-124 25-42 (59)
18 COG2916 Hns DNA-binding protei 41.6 85 0.0018 24.7 5.5 43 97-139 30-72 (128)
19 PF09868 DUF2095: Uncharacteri 37.4 52 0.0011 25.8 3.7 41 27-72 16-73 (128)
20 PRK10947 global DNA-binding tr 37.1 82 0.0018 24.9 4.9 47 95-141 34-80 (135)
21 COG5509 Uncharacterized small 36.9 30 0.00065 24.0 2.1 21 105-125 27-47 (65)
22 PF04799 Fzo_mitofusin: fzo-li 34.0 1E+02 0.0022 25.5 5.1 81 16-124 61-141 (171)
23 smart00498 FH2 Formin Homology 29.9 2.4E+02 0.0052 25.8 7.4 99 24-124 280-390 (432)
24 COG0216 PrfA Protein chain rel 29.4 1.3E+02 0.0029 27.6 5.5 88 25-122 6-102 (363)
25 PF05873 Mt_ATP-synt_D: ATP sy 28.9 2E+02 0.0044 23.1 6.1 69 9-106 49-117 (161)
26 PF02672 CP12: CP12 domain; I 28.5 42 0.00092 23.6 1.8 35 110-145 31-65 (71)
27 COG3352 FlaC Putative archaeal 28.5 1.8E+02 0.0039 23.7 5.6 57 66-132 52-109 (157)
28 COG5293 Predicted ATPase [Gene 28.4 1.4E+02 0.0031 28.7 5.6 92 53-144 284-396 (591)
29 PF09712 PHA_synth_III_E: Poly 27.2 4.1E+02 0.0089 23.3 8.1 60 13-78 171-232 (293)
30 PF08946 Osmo_CC: Osmosensory 27.1 1.1E+02 0.0023 20.1 3.3 29 95-123 11-39 (46)
31 KOG1319|consensus 26.5 2.2E+02 0.0047 24.2 5.9 57 66-124 73-133 (229)
32 PRK09737 EcoKI restriction-mod 25.7 2.2E+02 0.0047 25.3 6.3 29 72-100 360-388 (461)
33 PF12010 DUF3502: Domain of un 25.3 66 0.0014 24.8 2.5 15 101-115 115-129 (134)
34 PF09726 Macoilin: Transmembra 25.3 81 0.0018 31.3 3.7 25 23-47 457-481 (697)
35 PF12999 PRKCSH-like: Glucosid 25.2 1.7E+02 0.0036 24.3 5.0 30 95-124 145-174 (176)
36 PF04297 UPF0122: Putative hel 25.2 1.5E+02 0.0033 22.2 4.4 62 54-123 11-72 (101)
37 PRK10328 DNA binding protein, 24.3 1.8E+02 0.0039 22.9 4.8 35 105-139 44-78 (134)
38 PF07139 DUF1387: Protein of u 24.2 62 0.0013 29.0 2.4 26 105-130 238-263 (302)
39 PF09602 PhaP_Bmeg: Polyhydrox 24.1 3.3E+02 0.0072 22.4 6.4 54 64-126 47-101 (165)
40 cd05535 POLBc_epsilon DNA poly 23.6 24 0.00052 34.5 -0.3 14 50-63 594-607 (621)
41 PF08984 DUF1858: Domain of un 23.5 41 0.00089 22.2 0.9 17 129-145 3-19 (59)
42 PF02185 HR1: Hr1 repeat; Int 23.5 1.1E+02 0.0024 20.8 3.1 31 97-127 34-64 (70)
43 PF13094 CENP-Q: CENP-Q, a CEN 23.5 2.4E+02 0.0051 22.1 5.4 7 140-146 86-92 (160)
44 PF10545 MADF_DNA_bdg: Alcohol 23.2 2E+02 0.0044 19.0 4.5 48 12-59 28-81 (85)
45 PF08764 Coagulase: Staphyloco 23.1 5.4E+02 0.012 22.9 8.2 99 40-140 8-120 (282)
46 TIGR02366 DHAK_reg probable di 22.3 1.1E+02 0.0024 23.5 3.3 34 117-155 10-43 (176)
47 PF06160 EzrA: Septation ring 21.3 1.2E+02 0.0027 28.9 4.0 123 12-139 45-192 (560)
48 PF07798 DUF1640: Protein of u 21.2 4.1E+02 0.0089 21.2 6.5 35 89-123 117-151 (177)
49 PF12001 DUF3496: Domain of un 20.5 70 0.0015 24.6 1.7 33 108-140 5-38 (111)
50 PF08657 DASH_Spc34: DASH comp 20.5 2.8E+02 0.0061 24.1 5.7 82 22-122 176-258 (259)
No 1
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=100.00 E-value=4.2e-64 Score=404.55 Aligned_cols=160 Identities=46% Similarity=0.872 Sum_probs=94.8
Q ss_pred cccccccccccHHHHhhhCCCchhhHHHHHHHhhHHHHHHHhcCCCCCCcCChHHHhhcCC-CchhHHHHHHHhhccccc
Q psy9636 2 AARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIP-VPGLVDQFQKQYEALQIP 80 (181)
Q Consensus 2 Aakr~a~~~idWa~l~~~vp~~~~~~l~afK~r~d~~~~~l~~lpe~pp~IDwa~Yk~~l~-~~~lVD~fEK~y~s~kvp 80 (181)
||||+|+++|||++|+++||++|+++|++||+|||+++++|.+||++||+|||+|||++|+ |++|||+|||+|++|+||
T Consensus 1 Aakr~a~~aidWa~l~~~vp~~~~~~~~afk~r~d~~~~~v~~~pe~pp~IDwa~Yk~~l~~~~~lVD~feK~y~s~kip 80 (161)
T PF05873_consen 1 AAKRIAASAIDWAKLAERVPPEQKAQFQAFKKRSDEYKRRVSKLPEQPPKIDWAHYKSVLKENPGLVDEFEKQYESFKIP 80 (161)
T ss_dssp -----------HHHHHTTS-GGGHHHHHHHHHHHHHHHHHHHHS-SS-----HHHHHHC-S-STTHHHHHHHHHCC----
T ss_pred CcHHHHHHHccHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHhhhhHHHHHHHHHHHhccCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q psy9636 81 FPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEENQ 160 (181)
Q Consensus 81 ~p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~~~P~e~mTvdd~~~a~Pe~~~d~~~pt~wpH~p~~~ 160 (181)
||+|++++.|+++++++++++++++++|++||++|+++|++|++++||++||||||+++||++++|.|+||||||+|++|
T Consensus 81 ~p~d~~~~~i~~~e~~~~~~~~~~~~~s~~~i~~l~keL~~i~~~~P~e~mT~dd~~~a~Pe~~~d~~k~~~wPh~p~~~ 160 (161)
T PF05873_consen 81 YPVDKQTKEIDAQEKEAIKEAKEFEAESKKRIAELEKELANIESARPFEQMTVDDYAAAFPEIALDINKPTFWPHTPEEQ 160 (161)
T ss_dssp ----TTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-------------------------------------
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHhCCHHHHHHhCcccccccCCCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q psy9636 161 I 161 (181)
Q Consensus 161 ~ 161 (181)
+
T Consensus 161 ~ 161 (161)
T PF05873_consen 161 L 161 (161)
T ss_dssp -
T ss_pred C
Confidence 5
No 2
>KOG3366|consensus
Probab=100.00 E-value=9.7e-55 Score=350.20 Aligned_cols=162 Identities=35% Similarity=0.663 Sum_probs=157.1
Q ss_pred Ccc-cccccccccHHHHhhhCCCchhhHHHHHHHhhHHHHHHHhcCCCCCCcCChHHHhhcCCCchhHHHHHHHhhccc-
Q psy9636 1 MAA-RRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQ- 78 (181)
Q Consensus 1 MAa-kr~a~~~idWa~l~~~vp~~~~~~l~afK~r~d~~~~~l~~lpe~pp~IDwa~Yk~~l~~~~lVD~fEK~y~s~k- 78 (181)
||+ +++++++|||++|+++||++|+++|.+||++|+++.++|..||+++|+|||+|||++|+|.||||.||++|+|||
T Consensus 1 ma~~k~aa~~~IdWa~lae~v~~~~~~~~s~fk~~~~~~~~~l~~lpe~~p~IDwa~Yrk~va~a~~VD~~ek~y~slk~ 80 (172)
T KOG3366|consen 1 MAGVKSAASSSIDWAKLAERVPPNQAAEFSSFKSRNDEAVSRLLTLPEQPPTIDWAYYRKVVANAGLVDKYEKKYDSLKP 80 (172)
T ss_pred ChhhHHHHhccccHHHHHHHcCHHHHHHHHHHHHhhHHHHHHHHhcccCCCccCHHHHHHHhhhhHHHHHHHHHHHhccc
Confidence 654 667777799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhCC-CCCCCC-CCCCCCCCC
Q psy9636 79 IPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLAYP-ECAYDP-EKPTFWPHD 156 (181)
Q Consensus 79 vp~p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~~~P~e~mTvdd~~~a~P-e~~~d~-~~pt~wpH~ 156 (181)
||+|.|+|+++|+++++.++++|++++..|.+||++|+++|++|+++|||+|||||||+++|| +.+.|+ ++|+||||+
T Consensus 81 v~~~~~ky~~~vda~~k~~~~~~ke~~~~s~~~iq~l~k~le~v~~~~P~demT~ed~~ea~P~~~k~d~~~k~g~W~~p 160 (172)
T KOG3366|consen 81 VPVDEDKYLKEVDAEEKAAVKEIKEYESLSKKRIQELEKELEKVKSARPFDEMTMEDLNEAFPIEKKVDDMVKPGKWPHP 160 (172)
T ss_pred cCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHhCchhhcccccccCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 888999 999999999
Q ss_pred cccccC
Q psy9636 157 EENQIT 162 (181)
Q Consensus 157 p~~~~~ 162 (181)
|++|..
T Consensus 161 ~~e~~f 166 (172)
T KOG3366|consen 161 PYEQRF 166 (172)
T ss_pred chhhcc
Confidence 999975
No 3
>PF15348 GEMIN8: Gemini of Cajal bodies-associated protein 8
Probab=77.99 E-value=2.5 Score=35.77 Aligned_cols=40 Identities=23% Similarity=0.600 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhCCCCCCCCCCCCCCCCCcc
Q psy9636 101 IKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEE 158 (181)
Q Consensus 101 a~~~~~~s~~rI~elekeL~~I~~~~P~e~mTvdd~~~a~Pe~~~d~~~pt~wpH~p~ 158 (181)
.+.+-..+-.+|..++..| ||+.|..| |.+.|-|||+.|.
T Consensus 168 mk~lYG~~a~kI~aMEaal----------ql~fd~~~--------D~~~P~~WP~IPL 207 (209)
T PF15348_consen 168 MKKLYGDSAAKILAMEAAL----------QLSFDKHC--------DRKQPKYWPVIPL 207 (209)
T ss_pred HHHhhccchHHHHHHHHHH----------HHHHHhhh--------cccCCCCCCCCCC
Confidence 6677777777777777766 46777764 4578999999986
No 4
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=74.18 E-value=10 Score=25.49 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCCHHHHHHhC
Q psy9636 89 KINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVS--EMTMQEYCLAY 140 (181)
Q Consensus 89 ~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~~~P~e--~mTvdd~~~a~ 140 (181)
-|+.|..++...++.+.+..+.-+..+...++--=.-.|-. .||+-||++.+
T Consensus 6 ~l~~fd~Ev~~r~~~lr~~~~~~~~~~~~~~~~~l~riP~~vR~m~~~d~~~~y 59 (59)
T PF10444_consen 6 FLQNFDLEVEERIRRLRAQYENLLQSLRNRLEMELLRIPKAVRKMTMRDFLEKY 59 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHTSBHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhCCHHHHhhcC
Confidence 46677778888888888888888888777665433334554 99999998753
No 5
>PLN00204 CP12 gene family protein; Provisional
Probab=73.84 E-value=14 Score=28.99 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhCCCCCC
Q psy9636 90 INEEEKQTMAEIKKWIEE---------SQVRIAGYKKEIEDEEALPPVSEMTMQEYCLAYPECAY 145 (181)
Q Consensus 90 I~a~e~~a~~~a~~~~~~---------s~~rI~elekeL~~I~~~~P~e~mTvdd~~~a~Pe~~~ 145 (181)
|...-.+++++|++..+. .=.++.+|+++.+.-....+ +...+|.||+.+||...
T Consensus 57 L~e~Ie~aI~eArevCa~g~~S~eCaaAWDeVEELqAeasHqr~~~~-~kt~lE~YCdeNPeA~E 120 (126)
T PLN00204 57 ISEKVEKSIKEAEETCADDPASGECVAAWDEVEELSAAASHARDKKK-GSDPLEEYCKDNPETDE 120 (126)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHccccCC-CCChHHHHHHHCCCchh
Confidence 344444455556655542 33567889999998888776 88899999999999754
No 6
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=70.80 E-value=46 Score=32.06 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=60.7
Q ss_pred HHHhhhCCCchhhHHHHHHHhhHHHHHHHhcCCCCCC-cCChHHHhhcCCCchhHHHHHHHhhcccccCCCC-----chh
Q psy9636 14 SELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPP-KIDWALYKNKIPVPGLVDQFQKQYEALQIPFPQD-----TET 87 (181)
Q Consensus 14 a~l~~~vp~~~~~~l~afK~r~d~~~~~l~~lpe~pp-~IDwa~Yk~~l~~~~lVD~fEK~y~s~kvp~p~d-----~~~ 87 (181)
.++..+.+=.|......+++...+...+..+..++.| .-+.+.|++.|. ++++. . |--|.+ ..+
T Consensus 152 ~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~------~i~~~--~--ik~p~~i~~~~~e~ 221 (555)
T TIGR03545 152 RALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLE------AIKKK--D--IKNPLELQKIKEEF 221 (555)
T ss_pred HHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH------HHHhc--c--CCCHHHHHHHHHHH
Confidence 4445555556788888888888888877664322222 445666655542 22221 2 222222 223
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy9636 88 AKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALP 126 (181)
Q Consensus 88 ~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~~~ 126 (181)
..+-.+-+.....++.+..+.+.....++..++.+++++
T Consensus 222 d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap 260 (555)
T TIGR03545 222 DKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAP 260 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 333344455556677777788888888888888888776
No 7
>KOG3366|consensus
Probab=68.06 E-value=37 Score=28.08 Aligned_cols=89 Identities=21% Similarity=0.269 Sum_probs=53.1
Q ss_pred ccccHHHHhhhCCCchhhHHHHHHHhhHHHHHHHhcCCCCCCcCChHHHhhcCCCchhHHHHHHHhhcccccCCCCchhh
Q psy9636 9 SKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPFPQDTETA 88 (181)
Q Consensus 9 ~~idWa~l~~~vp~~~~~~l~afK~r~d~~~~~l~~lpe~pp~IDwa~Yk~~l~~~~lVD~fEK~y~s~kvp~p~d~~~~ 88 (181)
..|||+..-+.| ++..-.|.+...+.+|.. -+||=+-| -..||.+++. .++
T Consensus 51 p~IDwa~Yrk~v---------a~a~~VD~~ek~y~slk~--v~~~~~ky------~~~vda~~k~------------~~~ 101 (172)
T KOG3366|consen 51 PTIDWAYYRKVV---------ANAGLVDKYEKKYDSLKP--VPVDEDKY------LKEVDAEEKA------------AVK 101 (172)
T ss_pred CccCHHHHHHHh---------hhhHHHHHHHHHHHhccc--cCCCHHHH------HHHhhHHHHH------------HHH
Confidence 469999886665 334444444444444433 56666666 4577888876 455
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcCCC
Q psy9636 89 KINEEEKQTMAEIKKWIEESQVRIAGY----KKEIEDEEALPP 127 (181)
Q Consensus 89 ~I~a~e~~a~~~a~~~~~~s~~rI~el----ekeL~~I~~~~P 127 (181)
.|.+-+....++++++.++.. .++++ +-|.+.+....|
T Consensus 102 ~~ke~~~~s~~~iq~l~k~le-~v~~~~P~demT~ed~~ea~P 143 (172)
T KOG3366|consen 102 EIKEYESLSKKRIQELEKELE-KVKSARPFDEMTMEDLNEAFP 143 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhcCCcccccHHHHHHhCc
Confidence 666655555555555444322 22222 567888999999
No 8
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=54.38 E-value=38 Score=24.58 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=41.8
Q ss_pred hHHHHHHHhhccc-ccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCHHHHH
Q psy9636 66 LVDQFQKQYEALQ-IPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALP-PVSEMTMQEYC 137 (181)
Q Consensus 66 lVD~fEK~y~s~k-vp~p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~~~-P~e~mTvdd~~ 137 (181)
-|+.++..|..+. ++-+.+ -......+..+....++.++..|.+|++.+.-++..+ .| .++-+|+.
T Consensus 13 sl~~l~~~~~~~~~~~~~~~-----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF-~l~~~Ei~ 80 (97)
T PF09177_consen 13 SLDRLESLYRRWQRLRSDTS-----SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKF-NLSEEEIS 80 (97)
T ss_dssp HHHHHHHHHHHHHHHTTHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-T-HHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCC-----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCHHHHH
Confidence 4566677777766 444433 2223344555667777777888888888888888875 56 66666653
No 9
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=53.84 E-value=88 Score=28.06 Aligned_cols=98 Identities=11% Similarity=0.205 Sum_probs=62.1
Q ss_pred HHHhhhCCCchhhHHHHHHHhhHHHHHHHhcCCCCCCcCChHHHhhcCCCc------hhHHHHHHHhhcccccCCCCchh
Q psy9636 14 SELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVP------GLVDQFQKQYEALQIPFPQDTET 87 (181)
Q Consensus 14 a~l~~~vp~~~~~~l~afK~r~d~~~~~l~~lpe~pp~IDwa~Yk~~l~~~------~lVD~fEK~y~s~kvp~p~d~~~ 87 (181)
++|...||++.+..|..++.+.+.--. --.|.||-=...+.=+|. .|++.+...+.+|
T Consensus 33 s~~l~~ip~~~~~~l~~lq~~L~~kI~------IvspAIDLIel~aaRGNt~Lesal~L~~~L~~eI~~f---------- 96 (302)
T PF05508_consen 33 SRFLKKIPDKDRKELEKLQRRLESKIK------IVSPAIDLIELIAARGNTSLESALPLTKDLRREIDSF---------- 96 (302)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhhh------ccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH----------
Confidence 567777999998888888777665333 234778877777766763 3444554444433
Q ss_pred hhhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCH
Q psy9636 88 AKINEEEKQTMAEI---------KKWIEESQVRIAGYKKEIEDEEALPPVSEMTM 133 (181)
Q Consensus 88 ~~I~a~e~~a~~~a---------~~~~~~s~~rI~elekeL~~I~~~~P~e~mTv 133 (181)
-..+..-+ +....+.+.-+..++.-|..|+...||=+|-+
T Consensus 97 ------~~~l~~~~~~~e~~~~~~~~~~~i~~V~~~ik~LL~rId~aiPlinLal 145 (302)
T PF05508_consen 97 ------DERLEEAAEKEELSKSSENQKESIKKVERYIKDLLARIDDAIPLINLAL 145 (302)
T ss_pred ------HHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 33332222 24445555566677788999999999876643
No 10
>PLN02372 violaxanthin de-epoxidase
Probab=53.31 E-value=53 Score=30.87 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=16.1
Q ss_pred cCChHHHhhcCCC-----chhHHHHHHHhhcc
Q psy9636 51 KIDWALYKNKIPV-----PGLVDQFQKQYEAL 77 (181)
Q Consensus 51 ~IDwa~Yk~~l~~-----~~lVD~fEK~y~s~ 77 (181)
-|||+.|- ++-| |.|||.++|..+..
T Consensus 343 G~df~~F~-~tDNsCgpep~l~~~l~~~~e~~ 373 (455)
T PLN02372 343 GRDFSDFV-RTDNTCGPEPPLLERLEKDVEEG 373 (455)
T ss_pred CCCHHHhe-eeCCCCCCCchHHHHHHHHHHHH
Confidence 46777663 2222 77888888775443
No 11
>COG4197 Uncharacterized protein conserved in bacteria, prophage-related [Function unknown]
Probab=46.53 E-value=8.8 Score=28.79 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=11.1
Q ss_pred CcCChHHHhhcCC
Q psy9636 50 PKIDWALYKNKIP 62 (181)
Q Consensus 50 p~IDwa~Yk~~l~ 62 (181)
|.|||.||++.++
T Consensus 62 p~i~w~~~~~~~~ 74 (96)
T COG4197 62 PDIDWEYLRRSEC 74 (96)
T ss_pred ccCCHHHHHHHHh
Confidence 4999999998764
No 12
>PTZ00200 cysteine proteinase; Provisional
Probab=44.97 E-value=1.1e+02 Score=28.60 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=63.4
Q ss_pred CCchhhHHHHHHHhhHHHHHHHhcCCCCCCcCChHHHhhcCCCchhHHHHHHHhhcccccCCCCchhhhhhHHHHHHHHH
Q psy9636 21 TDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAE 100 (181)
Q Consensus 21 p~~~~~~l~afK~r~d~~~~~l~~lpe~pp~IDwa~Yk~~l~~~~lVD~fEK~y~s~kvp~p~d~~~~~I~a~e~~a~~~ 100 (181)
.=.-..++.+||+..++..++ .-|.+| ...+ ...||++=.-|+.=-|+.+.......+..|+.=..+-
T Consensus 66 ~~~~~~~~~~f~~~~~~~~~~------~~~~~~-----~~~~-~~~~~~~~~~~~~~~i~~~~~~e~e~~~~F~~f~~ky 133 (448)
T PTZ00200 66 LVSKSKMVKSFKSDLEEHIDK------DFPRLD-----KSKR-DSYVDELTRLFKDGYISDDPKLEFEVYLEFEEFNKKY 133 (448)
T ss_pred EEEehHhHHhHHHHHHHHHhc------cCCCcC-----hhHH-HHHHHHHHHHhhCCCcCCCccchHHHHHHHHHHHHHh
Confidence 334567888888666665544 333444 2222 4677777777776667666665555554444333322
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHhc----------CCCCCCCCHHHHHHhCCCCC
Q psy9636 101 IKKW--IEESQVRIAGYKKEIEDEEA----------LPPVSEMTMQEYCLAYPECA 144 (181)
Q Consensus 101 a~~~--~~~s~~rI~elekeL~~I~~----------~~P~e~mTvdd~~~a~Pe~~ 144 (181)
-+.+ ..+-..|..-....+..|++ +=.|.+||-|||...++.+.
T Consensus 134 ~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~~~y~lgiN~FsDlT~eEF~~~~~~~~ 189 (448)
T PTZ00200 134 NRKHATHAERLNRFLTFRNNYLEVKSHKGDEPYSKEINKFSDLTEEEFRKLFPVIK 189 (448)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHhcCcCCeEEeccccccCCHHHHHHHhccCC
Confidence 2222 12222344444444555543 22899999999988876543
No 13
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=44.09 E-value=1.1e+02 Score=24.01 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=37.7
Q ss_pred cCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCCCHHHHHHh
Q psy9636 80 PFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAG-YKKEIEDEEALPPVSEMTMQEYCLA 139 (181)
Q Consensus 80 p~p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~e-lekeL~~I~~~~P~e~mTvdd~~~a 139 (181)
+.+.+..++.|..+-++....++.|.+....++.+ .+.|++-|++-.| .+||-||+...
T Consensus 40 ~l~d~~v~~vi~k~iKqr~ea~e~y~~agR~dlae~e~~Ei~iL~~yLP-~~lseeEi~~~ 99 (143)
T PF09424_consen 40 ELTDEEVIAVIRKEIKQRKEAAEQYEKAGRPDLAEKEQAEIEILEEYLP-KQLSEEEIEAI 99 (143)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHGGGS------HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCc-CCCCHHHHHHH
Confidence 44444556677777777778888888777666544 6889999999999 69999998654
No 14
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=43.90 E-value=12 Score=17.82 Aligned_cols=6 Identities=83% Similarity=2.134 Sum_probs=4.4
Q ss_pred CCCCCCC
Q psy9636 149 KPTFWPH 155 (181)
Q Consensus 149 ~pt~wpH 155 (181)
|| |||-
T Consensus 2 kp-fw~p 7 (12)
T PF08248_consen 2 KP-FWPP 7 (12)
T ss_pred Cc-cCCC
Confidence 56 8985
No 15
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=43.36 E-value=1.3e+02 Score=22.12 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=48.7
Q ss_pred HhhcCCCchh-HHHHHHHhhcccccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHH
Q psy9636 57 YKNKIPVPGL-VDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQE 135 (181)
Q Consensus 57 Yk~~l~~~~l-VD~fEK~y~s~kvp~p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~~~P~e~mTvdd 135 (181)
|..++.|+.+ ..+++.+...+=-.|. ....+.+|..+.....+++.+.+.+-|..|-.-+.+|.+..-=..+|..+
T Consensus 7 f~~I~~n~~lt~~e~~~~l~~Wa~~~~---v~~~~~~f~~~~~~~~~~~~~~~~~vi~~L~~a~~~l~~I~~n~~lT~~q 83 (113)
T PF02520_consen 7 FFQIFQNPNLTKAEIEEQLDEWAEKYG---VQDQYNEFKAQVQAQKEEVRKNVTAVISNLSSAFAKLSAILDNKSLTRQQ 83 (113)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCHHH
Confidence 4455555433 3555555555543343 55667777777777777777777777777766666666666566777655
Q ss_pred HHH
Q psy9636 136 YCL 138 (181)
Q Consensus 136 ~~~ 138 (181)
-..
T Consensus 84 ~~~ 86 (113)
T PF02520_consen 84 QQE 86 (113)
T ss_pred HHH
Confidence 443
No 16
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.85 E-value=45 Score=26.45 Aligned_cols=34 Identities=15% Similarity=0.307 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy9636 98 MAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEM 131 (181)
Q Consensus 98 ~~~a~~~~~~s~~rI~elekeL~~I~~~~P~e~m 131 (181)
+....+-+...+.++..|+.+|+.+.+.++.++|
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el 114 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEEL 114 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 4445555666677777888888888887766665
No 17
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=42.21 E-value=22 Score=24.31 Aligned_cols=18 Identities=44% Similarity=0.359 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy9636 107 ESQVRIAGYKKEIEDEEA 124 (181)
Q Consensus 107 ~s~~rI~elekeL~~I~~ 124 (181)
+.+.||+-|+.|++.++.
T Consensus 25 EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEA 42 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555554
No 18
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=41.61 E-value=85 Score=24.73 Aligned_cols=43 Identities=12% Similarity=0.007 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHh
Q psy9636 97 TMAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLA 139 (181)
Q Consensus 97 a~~~a~~~~~~s~~rI~elekeL~~I~~~~P~e~mTvdd~~~a 139 (181)
+...=.+-.++...+|.+...++..|.++.-.+.+|.+++...
T Consensus 30 ~~~~r~~e~~~~~~~i~e~~~~~~~~~e~~~k~~i~~~el~~~ 72 (128)
T COG2916 30 VVQERQEEEAAAIAEIEERQEKYGTIRELLIKDGITPEELLNT 72 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhc
Confidence 3333344556667788888899999999999999999999443
No 19
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=37.37 E-value=52 Score=25.79 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=31.0
Q ss_pred HHHHHHHhhHHHHHHHhcC-----------------CCCCCcCChHHHhhcCCCchhHHHHHH
Q psy9636 27 NFNTFKAKYDGYLRKVSAL-----------------PEAPPKIDWALYKNKIPVPGLVDQFQK 72 (181)
Q Consensus 27 ~l~afK~r~d~~~~~l~~l-----------------pe~pp~IDwa~Yk~~l~~~~lVD~fEK 72 (181)
.+.-||+++=.+.+-|..- -+.+..+||+.| ||.++|-++.
T Consensus 16 d~eEFkkkfP~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy-----~PtViD~lrR 73 (128)
T PF09868_consen 16 DIEEFKKKFPALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGY-----NPTVIDYLRR 73 (128)
T ss_pred hHHHHHHHhHHHHHHHhccCCCceeeeechhhhhhhhccccCCCccCC-----CChHHHHHHH
Confidence 4577888888877766531 245678999999 8999998874
No 20
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=37.06 E-value=82 Score=24.85 Aligned_cols=47 Identities=4% Similarity=0.054 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhCC
Q psy9636 95 KQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLAYP 141 (181)
Q Consensus 95 ~~a~~~a~~~~~~s~~rI~elekeL~~I~~~~P~e~mTvdd~~~a~P 141 (181)
..++.+-.+-.....+++++-+..|+.|.+++--.-+|++|++...+
T Consensus 34 ~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~Gis~~eL~~~~~ 80 (135)
T PRK10947 34 EVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLA 80 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhcccc
Confidence 33444444444455566667777788888888778999999975433
No 21
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=36.87 E-value=30 Score=24.03 Aligned_cols=21 Identities=38% Similarity=0.336 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q psy9636 105 IEESQVRIAGYKKEIEDEEAL 125 (181)
Q Consensus 105 ~~~s~~rI~elekeL~~I~~~ 125 (181)
+.+.++||+-|+.|++.++..
T Consensus 27 V~El~eRIalLq~EIeRlkAe 47 (65)
T COG5509 27 VAELEERIALLQAEIERLKAE 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666665555543
No 22
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=34.05 E-value=1e+02 Score=25.49 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=18.7
Q ss_pred HhhhCCCchhhHHHHHHHhhHHHHHHHhcCCCCCCcCChHHHhhcCCCchhHHHHHHHhhcccccCCCCchhhhhhHHHH
Q psy9636 16 LTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEK 95 (181)
Q Consensus 16 l~~~vp~~~~~~l~afK~r~d~~~~~l~~lpe~pp~IDwa~Yk~~l~~~~lVD~fEK~y~s~kvp~p~d~~~~~I~a~e~ 95 (181)
+++|++=.+++.=.+||..+-++..+=..+--..+.=++.|. ...+++.-+.
T Consensus 61 lYERLtWT~~AKER~fK~Qfv~hAt~KLr~iv~~tsancs~Q----------------------------VqqeL~~tf~ 112 (171)
T PF04799_consen 61 LYERLTWTNKAKERAFKRQFVDHATEKLRLIVSFTSANCSHQ----------------------------VQQELSSTFA 112 (171)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH----------------------------HHHHHHHHHH
Confidence 345666666677777887776665543222223333232221 1223444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9636 96 QTMAEIKKWIEESQVRIAGYKKEIEDEEA 124 (181)
Q Consensus 96 ~a~~~a~~~~~~s~~rI~elekeL~~I~~ 124 (181)
.+...+..+..+.+.+|++|+.+++.+++
T Consensus 113 rL~~~Vd~~~~eL~~eI~~L~~~i~~le~ 141 (171)
T PF04799_consen 113 RLCQQVDQTKNELEDEIKQLEKEIQRLEE 141 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666666655553
No 23
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=29.89 E-value=2.4e+02 Score=25.83 Aligned_cols=99 Identities=11% Similarity=0.168 Sum_probs=54.4
Q ss_pred hhhHHHHHHHhhHHHHHHHhcCCCCCCcCChHHHhhcCC----C--------chhHHHHHHHhhcccccCCCCchhhhhh
Q psy9636 24 DRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIP----V--------PGLVDQFQKQYEALQIPFPQDTETAKIN 91 (181)
Q Consensus 24 ~~~~l~afK~r~d~~~~~l~~lpe~pp~IDwa~Yk~~l~----~--------~~lVD~fEK~y~s~kvp~p~d~~~~~I~ 91 (181)
-...++.|++....+...+..++... ..+ +.+..++. . ...+..++..|+.+-.=|..+......+
T Consensus 280 l~~~~~~l~~~~~~~e~~~~~l~~~~-~~~-d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~ 357 (432)
T smart00498 280 LEKDVKQLERQIKNLETDLGGLSDPE-NLD-DKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPE 357 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC-Ccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 44556667776666665566665543 223 44444421 1 2233444444555443344443334567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9636 92 EEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEA 124 (181)
Q Consensus 92 a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~ 124 (181)
.|+.....-+..|....+..+...+.+......
T Consensus 358 efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~ 390 (432)
T smart00498 358 EFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQ 390 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777666665554444
No 24
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=29.42 E-value=1.3e+02 Score=27.57 Aligned_cols=88 Identities=14% Similarity=0.182 Sum_probs=44.7
Q ss_pred hhHHHHHHHhhHHHHHHHhcCCCCCCcCChHHHhhcCCC----chhHHHHHHHhhcccccCCCCchhhhhhHH-----HH
Q psy9636 25 RPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPV----PGLVDQFQKQYEALQIPFPQDTETAKINEE-----EK 95 (181)
Q Consensus 25 ~~~l~afK~r~d~~~~~l~~lpe~pp~IDwa~Yk~~l~~----~~lVD~fEK~y~s~kvp~p~d~~~~~I~a~-----e~ 95 (181)
...|..+..+++++-+.|..- ----|.+.|++.-+. ..+|+.|.+ |++..- .+....+. -.
T Consensus 6 ~~kl~~~~~r~~el~~~L~~p---~v~~d~~~~~~lske~a~l~~iv~~~~~-~~~~~~------~l~~a~~~l~~~~D~ 75 (363)
T COG0216 6 LEKLESLLERYEELEALLSDP---EVISDPDEYRKLSKEYAELEPIVEKYRE-YKKAQE------DLEDAKEMLAEEKDP 75 (363)
T ss_pred HHHHHHHHHHHHHHHHHhcCc---ccccCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH------HHHHHHHHHhccCCH
Confidence 345677777888877776542 133477777766554 334444432 221110 00100000 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9636 96 QTMAEIKKWIEESQVRIAGYKKEIEDE 122 (181)
Q Consensus 96 ~a~~~a~~~~~~s~~rI~elekeL~~I 122 (181)
++..-|++=+.+.+.+|.+|+++|+.+
T Consensus 76 em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 76 EMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445666666666777777766654
No 25
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=28.93 E-value=2e+02 Score=23.06 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=34.9
Q ss_pred ccccHHHHhhhCCCchhhHHHHHHHhhHHHHHHHhcCCCCCCcCChHHHhhcCCCchhHHHHHHHhhcccccCCCCchhh
Q psy9636 9 SKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPFPQDTETA 88 (181)
Q Consensus 9 ~~idWa~l~~~vp~~~~~~l~afK~r~d~~~~~l~~lpe~pp~IDwa~Yk~~l~~~~lVD~fEK~y~s~kvp~p~d~~~~ 88 (181)
..|||+..-+.|+ +...-+..|.+.++.+.- -+|. +. --.-|+.++++ -.+
T Consensus 49 p~IDwa~Yk~~l~-~~~~lVD~feK~y~s~ki---p~p~-----------d~--~~~~i~~~e~~------------~~~ 99 (161)
T PF05873_consen 49 PKIDWAHYKSVLK-ENPGLVDEFEKQYESFKI---PYPV-----------DK--QTKEIDAQEKE------------AIK 99 (161)
T ss_dssp ----HHHHHHC-S--STTHHHHHHHHHCC----------------------T--TTTHHHHHHHH------------HHH
T ss_pred CCCCHHHHHHHhh-hhHHHHHHHHHHHhccCC---CCCh-----------HH--HHHHHHHHHHH------------HHH
Confidence 5799999988888 666677777777665541 1221 11 13577888876 344
Q ss_pred hhhHHHHHHHHHHHHHHH
Q psy9636 89 KINEEEKQTMAEIKKWIE 106 (181)
Q Consensus 89 ~I~a~e~~a~~~a~~~~~ 106 (181)
.++++.++..++++++.+
T Consensus 100 ~~~~~~~~s~~~i~~l~k 117 (161)
T PF05873_consen 100 EAKEFEAESKKRIAELEK 117 (161)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555544444433
No 26
>PF02672 CP12: CP12 domain; InterPro: IPR003823 This entry represents an uncharacterised domain in proteins of unknown function. This domain is found associated with CBS domains in some proteins IPR000644 from INTERPRO.; PDB: 3B1K_I 3B1J_D 3RVD_N 3QV1_I 2LJ9_A.
Probab=28.55 E-value=42 Score=23.58 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCHHHHHHhCCCCCC
Q psy9636 110 VRIAGYKKEIEDEEALPPVSEMTMQEYCLAYPECAY 145 (181)
Q Consensus 110 ~rI~elekeL~~I~~~~P~e~mTvdd~~~a~Pe~~~ 145 (181)
.++.+|+.+...-....+ +...+|.||+.+|+-..
T Consensus 31 deVEELqa~~~h~~~~~~-~~~~lE~yC~~nPea~E 65 (71)
T PF02672_consen 31 DEVEELQAEASHQRQEKK-DKTPLELYCDENPEADE 65 (71)
T ss_dssp --------------------TTCHHHHHHHSTTSTT
T ss_pred HHHHHHHHHHHHccccCC-CCCHHHHHHHHCCCcHH
Confidence 345667777766666656 77799999999998653
No 27
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=28.53 E-value=1.8e+02 Score=23.71 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=27.8
Q ss_pred hHHHHHHHhhcccccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCC
Q psy9636 66 LVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALP-PVSEMT 132 (181)
Q Consensus 66 lVD~fEK~y~s~kvp~p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~~~-P~e~mT 132 (181)
.-+.|+-.+.+|++++.-- ++....+.+-+...+.+|+.|..+-..+-+-. ||-..|
T Consensus 52 r~~~ieNdlg~~~~~~~g~----------kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~ 109 (157)
T COG3352 52 RMTDIENDLGKVKIEIEGQ----------KKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKT 109 (157)
T ss_pred HHHHHHhhcccccccccch----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhh
Confidence 4456666677777766332 12222333344444445555555555544443 554444
No 28
>COG5293 Predicted ATPase [General function prediction only]
Probab=28.42 E-value=1.4e+02 Score=28.70 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=55.5
Q ss_pred ChHHHhhcCCCchh--HHHHHHHhhcccccCCC--CchhhhhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q psy9636 53 DWALYKNKIPVPGL--VDQFQKQYEALQIPFPQ--DTETAKINEEEKQTMAEIKKWIE-----------ESQVRIAGYKK 117 (181)
Q Consensus 53 Dwa~Yk~~l~~~~l--VD~fEK~y~s~kvp~p~--d~~~~~I~a~e~~a~~~a~~~~~-----------~s~~rI~elek 117 (181)
-|..|++.++...+ -|++++-|+.+-|-+|. -+-...+.+|-..++++--+|.+ +++..+.+|-+
T Consensus 284 ~~~~~~~slk~~~~~~pd~i~~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~ 363 (591)
T COG5293 284 HWKRVKTSLKEQILFCPDEIQVLYEEVGVLFPGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGK 363 (591)
T ss_pred HHHHHhhcchhhccCChHHHHHHHHHhhhcChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899998887444 39999999999876664 35567777777766655444443 33333333333
Q ss_pred H----HHHHhcCCCCC--CCCHHHHHHhCCCCC
Q psy9636 118 E----IEDEEALPPVS--EMTMQEYCLAYPECA 144 (181)
Q Consensus 118 e----L~~I~~~~P~e--~mTvdd~~~a~Pe~~ 144 (181)
+ |+-+++-=-|+ +|-++++.+..-+++
T Consensus 364 ~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~ela 396 (591)
T COG5293 364 RRAEGLAFLKNRGVFEKYQTLCEEIIALRGELA 396 (591)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHH
Confidence 2 22333333344 344577766666654
No 29
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=27.21 E-value=4.1e+02 Score=23.33 Aligned_cols=60 Identities=18% Similarity=0.394 Sum_probs=37.4
Q ss_pred HHHHhhhCCCchhhHHHHHHHhhHHHHHHHhcCCCCCCcC-Ch-HHHhhcCCCchhHHHHHHHhhccc
Q psy9636 13 WSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKI-DW-ALYKNKIPVPGLVDQFQKQYEALQ 78 (181)
Q Consensus 13 Wa~l~~~vp~~~~~~l~afK~r~d~~~~~l~~lpe~pp~I-Dw-a~Yk~~l~~~~lVD~fEK~y~s~k 78 (181)
|..+...+..=+..-..+..+-.+.+..++....++..+| +| ++| --+|+.++..|..+-
T Consensus 171 ~~~~~~a~~ey~~~l~~~~~~a~~~~~~~l~~~~~~g~~~~s~re~~------d~Wi~~ae~~~~~~~ 232 (293)
T PF09712_consen 171 WMEYQRASQEYQAQLSEAWMKAFERMMEKLQERAEEGEQIKSWREFY------DIWIDAAEEAYEELF 232 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHH------HHHHHHHHHHHHHHH
Confidence 3333333333334444455666677778887777777777 46 333 248899999988775
No 30
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=27.11 E-value=1.1e+02 Score=20.09 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9636 95 KQTMAEIKKWIEESQVRIAGYKKEIEDEE 123 (181)
Q Consensus 95 ~~a~~~a~~~~~~s~~rI~elekeL~~I~ 123 (181)
++.-.+++.-+..++.+|++|++.-..+-
T Consensus 11 qe~~d~IEqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 11 QEHYDNIEQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33445677778888888888887755443
No 31
>KOG1319|consensus
Probab=26.52 E-value=2.2e+02 Score=24.24 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=30.6
Q ss_pred hHHHHHHHhhccc--ccCCCCchhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9636 66 LVDQFQKQYEALQ--IPFPQDTETAKI--NEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEA 124 (181)
Q Consensus 66 lVD~fEK~y~s~k--vp~p~d~~~~~I--~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~ 124 (181)
=-|.+.+.|.+++ ||- .+..-.+ .---+-+...+.+|+.-.+.++..-++++..+..
T Consensus 73 RRdAIk~GYddLq~LvP~--cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k 133 (229)
T KOG1319|consen 73 RRDAIKRGYDDLQTLVPT--CQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRK 133 (229)
T ss_pred HHHHHHhchHHHHHhccc--cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888 553 2111101 1111334555667777666666666665555543
No 32
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=25.73 E-value=2.2e+02 Score=25.35 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=16.3
Q ss_pred HHhhcccccCCCCchhhhhhHHHHHHHHH
Q psy9636 72 KQYEALQIPFPQDTETAKINEEEKQTMAE 100 (181)
Q Consensus 72 K~y~s~kvp~p~d~~~~~I~a~e~~a~~~ 100 (181)
+.+.++.||.|.-..-..|..+-..+.+.
T Consensus 360 ~~l~~l~IplPpl~EQ~kI~~~l~~l~~~ 388 (461)
T PRK09737 360 KALANYPIRVPPLEEQAEIVRRVEQLFAY 388 (461)
T ss_pred HHHhcCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34667788887654445555444444333
No 33
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=25.31 E-value=66 Score=24.78 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy9636 101 IKKWIEESQVRIAGY 115 (181)
Q Consensus 101 a~~~~~~s~~rI~el 115 (181)
+.+.+++.++.+.+.
T Consensus 115 idkV~~E~QkQlda~ 129 (134)
T PF12010_consen 115 IDKVIAELQKQLDAF 129 (134)
T ss_pred hHHHHHHHHHHHHHH
Confidence 455555555555544
No 34
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=25.26 E-value=81 Score=31.28 Aligned_cols=25 Identities=8% Similarity=0.235 Sum_probs=16.8
Q ss_pred chhhHHHHHHHhhHHHHHHHhcCCC
Q psy9636 23 ADRPNFNTFKAKYDGYLRKVSALPE 47 (181)
Q Consensus 23 ~~~~~l~afK~r~d~~~~~l~~lpe 47 (181)
.-+.+|..+|..+|++..++..|-.
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~ 481 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQ 481 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777666543
No 35
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=25.24 E-value=1.7e+02 Score=24.27 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9636 95 KQTMAEIKKWIEESQVRIAGYKKEIEDEEA 124 (181)
Q Consensus 95 ~~a~~~a~~~~~~s~~rI~elekeL~~I~~ 124 (181)
.+++.++++...+...+|.+|+++|...+.
T Consensus 145 ~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 145 QELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355566677777777777788777776554
No 36
>PF04297 UPF0122: Putative helix-turn-helix protein, YlxM / p13 like; InterPro: IPR007394 Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13 (O05290 from SWISSPROT). Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway [].; PDB: 1S7O_A 1XSV_B.
Probab=25.22 E-value=1.5e+02 Score=22.23 Aligned_cols=62 Identities=19% Similarity=0.345 Sum_probs=36.4
Q ss_pred hHHHhhcCCCchhHHHHHHHhhcccccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9636 54 WALYKNKIPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEE 123 (181)
Q Consensus 54 wa~Yk~~l~~~~lVD~fEK~y~s~kvp~p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~ 123 (181)
|++|...|. +||.+-+..=|..|=-+++|.....---..+-..+..+...+.+++..|.-++
T Consensus 11 ~d~Yg~LLT--------~kQ~~~l~lyy~eDlSlsEIAe~~~iSRqaV~d~ikr~~~~L~~yE~kL~l~~ 72 (101)
T PF04297_consen 11 FDFYGELLT--------EKQREILELYYEEDLSLSEIAEELGISRQAVYDSIKRAEKKLEEYEEKLGLVE 72 (101)
T ss_dssp HHHHGGGS---------HHHHHHHHHHCTS---HHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHCC--------HHHHHHHHHHHccCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 667776665 45666666556666566777766655555566667777777777777665444
No 37
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=24.29 E-value=1.8e+02 Score=22.89 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHh
Q psy9636 105 IEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLA 139 (181)
Q Consensus 105 ~~~s~~rI~elekeL~~I~~~~P~e~mTvdd~~~a 139 (181)
..+...+..+.+..|+.|..+.--.-+|++|++..
T Consensus 44 ~~~~~~~~~er~~~l~~i~~~~~~~Git~eeL~~~ 78 (134)
T PRK10328 44 EEQQQRELAERQEKINTWLELMKADGINPEELLGN 78 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhh
Confidence 33344455556666667777766688999999653
No 38
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=24.22 E-value=62 Score=29.02 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy9636 105 IEESQVRIAGYKKEIEDEEALPPVSE 130 (181)
Q Consensus 105 ~~~s~~rI~elekeL~~I~~~~P~e~ 130 (181)
..-++..|.||.++|+.+-+.|.||+
T Consensus 238 ~~MsE~Ql~ELRadIK~fvs~rk~de 263 (302)
T PF07139_consen 238 SQMSEEQLAELRADIKHFVSERKYDE 263 (302)
T ss_pred hhcCHHHHHHHHHHHHHHhhhhhhHH
Confidence 34456778888999999888888875
No 39
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=24.10 E-value=3.3e+02 Score=22.37 Aligned_cols=54 Identities=9% Similarity=0.165 Sum_probs=33.9
Q ss_pred chhHHHHHHHhhcccccCCCCchhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCC
Q psy9636 64 PGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEI-KKWIEESQVRIAGYKKEIEDEEALP 126 (181)
Q Consensus 64 ~~lVD~fEK~y~s~kvp~p~d~~~~~I~a~e~~a~~~a-~~~~~~s~~rI~elekeL~~I~~~~ 126 (181)
...|++||+..+.|+ ........+.++.. +.+...+..+|.+++.++..|.+.+
T Consensus 47 tk~veeLe~~~~q~~---------~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i 101 (165)
T PF09602_consen 47 TKQVEELEKELKQFK---------REFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKI 101 (165)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888877773 23333344444444 4566667777778877777776553
No 40
>cd05535 POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) epsilon has been proposed to play a role in elongation of the leading strand during DNA replication. Pol epsilon might also have a role in DNA repair. The structure of pol epsilon is characteristic of this family with the exception that it contains a large c-terminal domain with an unclear function. Phylogenetic analyses indicate that Pol epsilon is the ortholog to the archaeal Pol B3 rather than to Pol alpha, delta, or zeta. This might be because pol epsilon is ancestral to both archaea and eukaryotes DNA polymerases type B.
Probab=23.61 E-value=24 Score=34.50 Aligned_cols=14 Identities=29% Similarity=0.698 Sum_probs=11.5
Q ss_pred CcCChHHHhhcCCC
Q psy9636 50 PKIDWALYKNKIPV 63 (181)
Q Consensus 50 p~IDwa~Yk~~l~~ 63 (181)
.=|||+||++.|..
T Consensus 594 ~iiDW~YY~~rl~~ 607 (621)
T cd05535 594 DIIDWDYYIERLGS 607 (621)
T ss_pred hhhchHHHHHHHHH
Confidence 35899999999864
No 41
>PF08984 DUF1858: Domain of unknown function (DUF1858); InterPro: IPR015077 This protein has no known function. It is found in various hypothetical bacterial proteins. ; PDB: 2K53_A 2K5E_A 2FI0_A.
Probab=23.55 E-value=41 Score=22.20 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=13.7
Q ss_pred CCCCHHHHHHhCCCCCC
Q psy9636 129 SEMTMQEYCLAYPECAY 145 (181)
Q Consensus 129 e~mTvdd~~~a~Pe~~~ 145 (181)
.+||+.|+++.||++..
T Consensus 3 ~~~~I~el~~~yP~~~~ 19 (59)
T PF08984_consen 3 KDMTIYELLEQYPELIE 19 (59)
T ss_dssp TTSBHHHHHHH-GGGHH
T ss_pred CcCCHHHHHHHCHHHHH
Confidence 37899999999999864
No 42
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=23.55 E-value=1.1e+02 Score=20.76 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy9636 97 TMAEIKKWIEESQVRIAGYKKEIEDEEALPP 127 (181)
Q Consensus 97 a~~~a~~~~~~s~~rI~elekeL~~I~~~~P 127 (181)
....|..-..+|+.+|..|+.+|..+....+
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~ 64 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQQRSQ 64 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4667888899999999999999999987653
No 43
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=23.49 E-value=2.4e+02 Score=22.10 Aligned_cols=7 Identities=29% Similarity=0.311 Sum_probs=3.0
Q ss_pred CCCCCCC
Q psy9636 140 YPECAYD 146 (181)
Q Consensus 140 ~Pe~~~d 146 (181)
+|-+..+
T Consensus 86 ~~vL~~~ 92 (160)
T PF13094_consen 86 HPVLQLD 92 (160)
T ss_pred chhhccc
Confidence 4444443
No 44
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=23.22 E-value=2e+02 Score=19.00 Aligned_cols=48 Identities=17% Similarity=0.453 Sum_probs=33.4
Q ss_pred cHHHHhhhCCC-----chhhHHHHHHHhhHHHHHHHh-cCCCCCCcCChHHHhh
Q psy9636 12 NWSELTSRLTD-----ADRPNFNTFKAKYDGYLRKVS-ALPEAPPKIDWALYKN 59 (181)
Q Consensus 12 dWa~l~~~vp~-----~~~~~l~afK~r~d~~~~~l~-~lpe~pp~IDwa~Yk~ 59 (181)
-|..|+..+.. +-+..+..|+..+...++++. .-........|.||..
T Consensus 28 aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (85)
T PF10545_consen 28 AWQEIARELGKEFSVDDCKKRWKNLRDRYRRELKKIKSSGGSEEYVPTWSYYEE 81 (85)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHH
Confidence 47888877542 246777888887777777776 3456667778888864
No 45
>PF08764 Coagulase: Staphylococcus aureus coagulase; InterPro: IPR014874 Staphylococcus aureus secretes a cofactor called coagulase. Coagulase is an extracellular protein that forms a complex with human prothrombin, and activates it without the usual proteolytic cleavages []. The resulting complex directly initiates blood clotting. ; PDB: 1NU7_H 1NU9_C 2A1D_D.
Probab=23.05 E-value=5.4e+02 Score=22.90 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=54.7
Q ss_pred HHHhcCCCCCCcCChHHHhhcCCCchhHHHHHHHhhccc-ccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9636 40 RKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQ-IPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKE 118 (181)
Q Consensus 40 ~~l~~lpe~pp~IDwa~Yk~~l~~~~lVD~fEK~y~s~k-vp~p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~eleke 118 (181)
++|..-+..-.+|+=.+|...+. .|.++|=....=+. .-|..-.+-.+++....++++.-..++......-..+.+-
T Consensus 8 s~v~~~sk~~~~I~~~yy~~~~~--~Le~~~~~a~~~~~~~~Y~E~EYK~A~dKl~~ril~Ed~yLl~~k~~~~~~~k~~ 85 (282)
T PF08764_consen 8 SQVNENSKNGTPISSWYYWEIIE--SLESQFIYALDIINNYEYGEPEYKEAKDKLMQRILAEDQYLLEKKKDEYEKYKKW 85 (282)
T ss_dssp --S-TTCCCS-B--HHHHHHHHH--HHHHHHHHHHHHHH-GGG-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcCCCcCcHHHHHHHHH--HHHHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777889999999976653 44444433333233 4566666777888888888777777766665555555555
Q ss_pred HHHHhcCCC-------------CCCCCHHHHHHhC
Q psy9636 119 IEDEEALPP-------------VSEMTMQEYCLAY 140 (181)
Q Consensus 119 L~~I~~~~P-------------~e~mTvdd~~~a~ 140 (181)
..+-....| +-.||++.|..-+
T Consensus 86 ~~~~~~~np~~~~k~~~f~~~~i~~LT~~rYn~I~ 120 (282)
T PF08764_consen 86 YKKKKNENPNTKIKMKKFDKYNIYGLTMERYNYIY 120 (282)
T ss_dssp HHHHHCCSTTTTS----TTT------BHHHHHHHH
T ss_pred HHHhhhcCcccccccccccccchhhcCHHHHHHHH
Confidence 555444334 5567887776544
No 46
>TIGR02366 DHAK_reg probable dihydroxyacetone kinase regulator. The seed alignment for this family was built from a set of closely related uncharacterized proteins associated with operons for the type of bacterial dihydroxyacetone kinase that transfers PEP-derived phosphate from a phosphoprotein, as in phosphotransferase system transport, rather than from ATP. Members have a TetR transcriptional regulator domain (pfam00440) at the N-terminus and sequence homology throughout.
Probab=22.31 E-value=1.1e+02 Score=23.45 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=24.5
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHhCCCCCCCCCCCCCCCC
Q psy9636 117 KEIEDEEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPH 155 (181)
Q Consensus 117 keL~~I~~~~P~e~mTvdd~~~a~Pe~~~d~~~pt~wpH 155 (181)
+.+-.+=...||+.+||.|+|+. -+.++.||.=|
T Consensus 10 ~a~~~Ll~~k~~~~ITV~~I~~~-----AgvsR~TFY~h 43 (176)
T TIGR02366 10 KAFKDLMEVQAFSKISVSDIMST-----AQIRRQTFYNH 43 (176)
T ss_pred HHHHHHHHHCCCccCCHHHHHHH-----hCCCHHHHHHH
Confidence 34444555789999999999875 34477777766
No 47
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.26 E-value=1.2e+02 Score=28.86 Aligned_cols=123 Identities=19% Similarity=0.290 Sum_probs=0.0
Q ss_pred cHHHHhhh-CCCchhhHHHHHHHhhHHHH--------HHHhcCCCCCCcCChHHHhhcCCC-chhHHHHHHHhhccc--c
Q psy9636 12 NWSELTSR-LTDADRPNFNTFKAKYDGYL--------RKVSALPEAPPKIDWALYKNKIPV-PGLVDQFQKQYEALQ--I 79 (181)
Q Consensus 12 dWa~l~~~-vp~~~~~~l~afK~r~d~~~--------~~l~~lpe~pp~IDwa~Yk~~l~~-~~lVD~fEK~y~s~k--v 79 (181)
...++-.. +.|++...|..+++..+++. ..|...-+......|-.-++.+.. -..++.++....++. +
T Consensus 45 el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l 124 (560)
T PF06160_consen 45 ELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDEL 124 (560)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhcCC-CCCCCCHH-HHHHh
Q psy9636 80 PFPQDTETAKINEEEKQTMAEIKKWIEESQVRI-----------AGYKKEIEDEEALP-PVSEMTMQ-EYCLA 139 (181)
Q Consensus 80 p~p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI-----------~elekeL~~I~~~~-P~e~mTvd-d~~~a 139 (181)
- .+-..+..-+..+...++.-..+.+.+ ..|++.|++|+... -|+++|-. |+.+|
T Consensus 125 ~-----~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A 192 (560)
T PF06160_consen 125 D-----ELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEA 192 (560)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
No 48
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.16 E-value=4.1e+02 Score=21.24 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9636 89 KINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEE 123 (181)
Q Consensus 89 ~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~ 123 (181)
.+.........++.++-.....+|..+..+++..+
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666667777777777777777776654
No 49
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=20.53 E-value=70 Score=24.58 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHh-cCCCCCCCCHHHHHHhC
Q psy9636 108 SQVRIAGYKKEIEDEE-ALPPVSEMTMQEYCLAY 140 (181)
Q Consensus 108 s~~rI~elekeL~~I~-~~~P~e~mTvdd~~~a~ 140 (181)
.+-+|.+|+.+|.+++ +...+..+-+|.|-+.|
T Consensus 5 mElrIkdLeselsk~Ktsq~d~~~~eLEkYkqly 38 (111)
T PF12001_consen 5 MELRIKDLESELSKMKTSQEDSNKTELEKYKQLY 38 (111)
T ss_pred HHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHH
Confidence 3456677777777777 34455555555555443
No 50
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.50 E-value=2.8e+02 Score=24.10 Aligned_cols=82 Identities=11% Similarity=0.206 Sum_probs=48.1
Q ss_pred CchhhHHHHHHHhhHHHHHHHhcCCCCCCcCChHHHhhcCCCchhHHHHHHHhhcccccC-CCCchhhhhhHHHHHHHHH
Q psy9636 22 DADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPF-PQDTETAKINEEEKQTMAE 100 (181)
Q Consensus 22 ~~~~~~l~afK~r~d~~~~~l~~lpe~pp~IDwa~Yk~~l~~~~lVD~fEK~y~s~kvp~-p~d~~~~~I~a~e~~a~~~ 100 (181)
+..+..+.+|+.++.++...+.. |. +-|.+-+.+.++..... ..+.+.... .........
T Consensus 176 ~ga~eki~~Lr~~y~~l~~~i~~------------lE------~~VaeQ~~qL~~~n~~~~~~~~~~~~~-~~~~~~~~~ 236 (259)
T PF08657_consen 176 PGAREKIAALRQRYNQLSNSIAY------------LE------AEVAEQEAQLERMNRSSSDSSSDDEES-EESSEDSVD 236 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH------------HH------HHHHHHHHHHHHHhcCccccccccccc-ccccccchh
Confidence 46788888888888888887654 33 35566667777765322 222110000 111222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9636 101 IKKWIEESQVRIAGYKKEIEDE 122 (181)
Q Consensus 101 a~~~~~~s~~rI~elekeL~~I 122 (181)
.++.+..=..+|.+|+.++..+
T Consensus 237 ~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 237 TDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5556666677888888888765
Done!