Query psy9636
Match_columns 181
No_of_seqs 111 out of 226
Neff 5.5
Searched_HMMs 29240
Date Sat Aug 17 00:46:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cly_B ATP synthase D chain, m 100.0 1.4E-63 4.8E-68 400.1 14.0 159 2-161 1-160 (160)
2 1hlo_A Protein (transcription 56.3 25 0.00087 23.7 5.4 52 68-124 25-78 (80)
3 1t3j_A Mitofusin 1; coiled coi 48.8 24 0.00082 25.4 4.4 38 88-125 32-69 (96)
4 1nkp_B MAX protein, MYC proto- 47.4 49 0.0017 22.3 5.7 26 97-122 41-66 (83)
5 4dzn_A Coiled-coil peptide CC- 39.4 35 0.0012 19.5 3.2 18 106-123 12-29 (33)
6 1nlw_A MAD protein, MAX dimeri 39.1 89 0.003 21.2 6.1 26 97-122 41-66 (80)
7 1fxk_A Prefoldin; archaeal pro 38.0 49 0.0017 22.8 4.7 18 27-44 9-26 (107)
8 2asr_A Aspartate receptor; che 35.8 26 0.00089 24.6 2.9 14 64-77 80-93 (142)
9 1i6z_A BAG-family molecular ch 34.1 1.5E+02 0.0052 22.4 7.1 59 65-125 70-129 (135)
10 3mfn_A Uncharacterized protein 33.5 34 0.0012 26.5 3.3 59 49-112 92-153 (157)
11 1fmh_B General control protein 32.7 30 0.001 19.7 2.2 21 25-45 7-27 (33)
12 2k6i_A Uncharacterized protein 32.5 1E+02 0.0035 20.0 5.1 42 82-123 13-54 (56)
13 2lj9_A CP12 domain-containing 32.1 15 0.00052 26.6 1.1 56 90-145 28-93 (99)
14 1t7s_A BAG-1 cochaperone; stru 32.0 72 0.0025 24.4 4.9 63 65-127 69-136 (137)
15 3nmd_A CGMP dependent protein 31.7 1.1E+02 0.0036 20.9 5.3 30 98-127 42-71 (72)
16 4dnd_A Syntaxin-10, SYN10; str 30.6 87 0.003 23.3 5.2 39 97-136 68-107 (130)
17 1zme_C Proline utilization tra 27.9 63 0.0022 20.3 3.5 22 104-125 45-66 (70)
18 2cu7_A KIAA1915 protein; nucle 25.8 88 0.003 20.3 4.0 30 12-44 30-59 (72)
19 1bb1_B Designed, thermostable 25.4 1E+02 0.0036 17.8 4.4 16 108-123 14-29 (36)
20 2pnv_A Small conductance calci 24.9 1.2E+02 0.0042 18.5 4.5 26 99-124 12-37 (43)
21 1ydx_A Type I restriction enzy 24.7 68 0.0023 26.7 4.0 12 73-84 342-354 (406)
22 2l5g_B Putative uncharacterize 24.6 1.3E+02 0.0043 18.5 4.5 24 101-124 14-37 (42)
23 2avr_X Adhesion A; antiparalle 24.5 1.6E+02 0.0054 21.9 5.5 33 92-124 71-103 (119)
24 3he4_A Synzip6; heterodimeric 23.5 1.4E+02 0.0049 18.7 5.5 29 96-124 24-52 (56)
25 1vls_A TAR, aspartate receptor 23.2 44 0.0015 23.5 2.2 14 64-77 83-96 (146)
26 3u1c_A Tropomyosin alpha-1 cha 22.4 1.4E+02 0.0049 20.9 4.9 16 65-80 2-17 (101)
27 2er8_A Regulatory protein Leu3 22.1 59 0.002 20.7 2.5 22 103-124 49-70 (72)
28 3e1k_B Lactose regulatory prot 22.0 39 0.0013 17.9 1.2 12 128-139 5-16 (22)
29 2iw5_B Protein corest, REST co 21.5 50 0.0017 27.4 2.5 21 11-31 153-173 (235)
30 2y7c_A Type-1 restriction enzy 20.4 1.5E+02 0.0052 24.6 5.4 42 73-114 151-192 (464)
31 2l5g_A GPS2 protein, G protein 20.3 1.1E+02 0.0038 18.3 3.2 21 104-124 9-29 (38)
32 2l5b_A Activator of apoptosis 20.3 15 0.0005 21.1 -0.7 7 149-155 5-11 (32)
33 3bts_E Regulatory protein GAL4 20.2 46 0.0016 18.3 1.3 12 128-139 3-14 (26)
No 1
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=100.00 E-value=1.4e-63 Score=400.09 Aligned_cols=159 Identities=31% Similarity=0.679 Sum_probs=119.6
Q ss_pred cccccccccccHHHHhhhCCCchhhHHHHHHHhhHHHHHHHhcCCCCCCcCChHHHhhcCCCchhHHHHHHHhhcccccC
Q psy9636 2 AARRFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVPGLVDQFQKQYEALQIPF 81 (181)
Q Consensus 2 Aakr~a~~~idWa~l~~~vp~~~~~~l~afK~r~d~~~~~l~~lpe~pp~IDwa~Yk~~l~~~~lVD~fEK~y~s~kvp~ 81 (181)
||||+|+++|||++|+++||++|+++|++||++||+++++|.+||++||+|||+|||++|+|++|||+|||+|++|+|||
T Consensus 1 a~rr~a~~~idW~~l~~~v~~~~~a~~~afK~~~d~~~~~v~~lpe~pp~IDwa~Yk~~l~~~~lVD~fek~y~s~kvp~ 80 (160)
T 2cly_B 1 AGRKLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPI 80 (160)
T ss_dssp ---CCCCCCCCHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHSCSSCCCCCHHHHHHTCSSTTHHHHHHHHHTTCCCCC
T ss_pred CchhHHHhhccHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHhCCchHHHHHHHHHHhccCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhCCCCCCCC-CCCCCCCCCcccc
Q psy9636 82 PQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPPVSEMTMQEYCLAYPECAYDP-EKPTFWPHDEENQ 160 (181)
Q Consensus 82 p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~~~P~e~mTvdd~~~a~Pe~~~d~-~~pt~wpH~p~~~ 160 (181)
|+|+++++|+++|++++++|++|+++|++||++|++||++|++++||+|||||||+++||++++|+ ++| ||||+|++|
T Consensus 81 ~~d~~~~~i~a~e~~~~~~a~~~~~~s~~ri~~lekeL~~i~~~~P~~~mT~dd~~~a~Pe~~~D~i~~p-~Wph~p~~~ 159 (160)
T 2cly_B 81 PEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRNIIPFDQMTIEDLNEVFPETKLDKKKYP-YWPHRPIET 159 (160)
T ss_dssp CCCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------------
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHhCCHHHHHHhCchhccCcccCC-CCCCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 899 999999988
Q ss_pred c
Q psy9636 161 I 161 (181)
Q Consensus 161 ~ 161 (181)
+
T Consensus 160 ~ 160 (160)
T 2cly_B 160 L 160 (160)
T ss_dssp -
T ss_pred C
Confidence 5
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=56.34 E-value=25 Score=23.68 Aligned_cols=52 Identities=15% Similarity=0.366 Sum_probs=35.4
Q ss_pred HHHHHHhhccc--ccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9636 68 DQFQKQYEALQ--IPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEA 124 (181)
Q Consensus 68 D~fEK~y~s~k--vp~p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~ 124 (181)
+.+-..|..+. ||...+.-++. ..+...|-+|+.....++.+|+.+++.++.
T Consensus 25 ~~in~~f~~Lr~lvP~~~~~k~sK-----~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 25 DHIKDSFHSLRDSVPSLQGEKASR-----AQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHSGGGTTSCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHCcCCCCCCccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566665 56433222222 346778899999999999999999888763
No 3
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=48.82 E-value=24 Score=25.43 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9636 88 AKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEAL 125 (181)
Q Consensus 88 ~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~~ 125 (181)
.+++.-+..+-..+..+..+.+.+|++|++++..|+..
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~i 69 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKM 69 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888888888899999999888887753
No 4
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=47.41 E-value=49 Score=22.28 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9636 97 TMAEIKKWIEESQVRIAGYKKEIEDE 122 (181)
Q Consensus 97 a~~~a~~~~~~s~~rI~elekeL~~I 122 (181)
+...|-+|+.....++..|+.++..+
T Consensus 41 iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 41 ILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444443
No 5
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=39.43 E-value=35 Score=19.51 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy9636 106 EESQVRIAGYKKEIEDEE 123 (181)
Q Consensus 106 ~~s~~rI~elekeL~~I~ 123 (181)
+..+++|+.|+=+++.++
T Consensus 12 aalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 12 AALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555555555443
No 6
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=39.10 E-value=89 Score=21.19 Aligned_cols=26 Identities=12% Similarity=0.046 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9636 97 TMAEIKKWIEESQVRIAGYKKEIEDE 122 (181)
Q Consensus 97 a~~~a~~~~~~s~~rI~elekeL~~I 122 (181)
+...|.+|+.....+...+..++..+
T Consensus 41 iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 41 LLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666655555444
No 7
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=37.98 E-value=49 Score=22.78 Aligned_cols=18 Identities=6% Similarity=0.154 Sum_probs=8.5
Q ss_pred HHHHHHHhhHHHHHHHhc
Q psy9636 27 NFNTFKAKYDGYLRKVSA 44 (181)
Q Consensus 27 ~l~afK~r~d~~~~~l~~ 44 (181)
.|+.+..+...+...+..
T Consensus 9 ~f~~lq~~~~~l~~q~~~ 26 (107)
T 1fxk_A 9 QFQQLQQQAQAISVQKQT 26 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555444433
No 8
>2asr_A Aspartate receptor; chemotaxis; 2.30A {Escherichia coli} SCOP: a.24.2.1
Probab=35.78 E-value=26 Score=24.61 Aligned_cols=14 Identities=7% Similarity=0.242 Sum_probs=7.3
Q ss_pred chhHHHHHHHhhcc
Q psy9636 64 PGLVDQFQKQYEAL 77 (181)
Q Consensus 64 ~~lVD~fEK~y~s~ 77 (181)
..++++++..|..+
T Consensus 80 ~~l~~~l~~~y~~~ 93 (142)
T 2asr_A 80 VATSRNIDEKYKNY 93 (142)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555544
No 9
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=34.15 E-value=1.5e+02 Score=22.44 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=45.4
Q ss_pred hhHHHHHHHhhccc-ccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9636 65 GLVDQFQKQYEALQ-IPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEAL 125 (181)
Q Consensus 65 ~lVD~fEK~y~s~k-vp~p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~~ 125 (181)
+...+|-|..+.+. +.+|.+ ....-..-+.++..+..+....++-++++..++++|++-
T Consensus 70 ~~~E~~Mk~LE~LDs~~ip~~--~~~~R~kRK~lV~~iQ~~L~~~D~l~~~~~~~~~~~q~~ 129 (135)
T 1i6z_A 70 ATIEQFMKILEEIDTMVLPEQ--FKDSRLKRKNLVKKVQVFLAECDTVEQYICQETERLQST 129 (135)
T ss_dssp HHHHHHHHHHHHHHTCCCCSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhccccCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55677777766665 555554 235566678899999999999999999999999999874
No 10
>3mfn_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 2.02A {Dyadobacter fermentans}
Probab=33.53 E-value=34 Score=26.49 Aligned_cols=59 Identities=19% Similarity=0.376 Sum_probs=40.7
Q ss_pred CCcCChHHHhhcCCC--chhHHHHHHHhhccc-ccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy9636 49 PPKIDWALYKNKIPV--PGLVDQFQKQYEALQ-IPFPQDTETAKINEEEKQTMAEIKKWIEESQVRI 112 (181)
Q Consensus 49 pp~IDwa~Yk~~l~~--~~lVD~fEK~y~s~k-vp~p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI 112 (181)
--+||| |++.|.+ +.++..|=..|+-+. .-++..+....|-. .=++.|+..+.-++.|.
T Consensus 92 rk~vDw--Y~~~L~k~DKk~L~~F~~AY~~LhlAM~YdG~~~a~v~K---~Gl~~Ae~iI~wvE~Rt 153 (157)
T 3mfn_A 92 RKDVDW--YKSNLAQQDKKILNTFVSVYEQLHLVMAYDGVGDAEVVK---LGFQRAEIIIDWVERRL 153 (157)
T ss_dssp CCCHHH--HHHHHHTTCHHHHHHHHHHHHHHCCCCCCTCCCBHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred CCChHH--HHHHHHhcCHHHHHHHHHHHHHHHHHhhccCcchHHHHH---HHHHHHHHHHHHHHHHh
Confidence 356666 8988865 899999999999999 67777666655543 33444555555555443
No 11
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=32.68 E-value=30 Score=19.75 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=14.9
Q ss_pred hhHHHHHHHhhHHHHHHHhcC
Q psy9636 25 RPNFNTFKAKYDGYLRKVSAL 45 (181)
Q Consensus 25 ~~~l~afK~r~d~~~~~l~~l 45 (181)
+..+++||.||-.++.+|..|
T Consensus 7 kkrvqalkarnyaakqkvqal 27 (33)
T 1fmh_B 7 KKRVQALKARNYAAKQKVQAL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 345678888888777777654
No 12
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=32.53 E-value=1e+02 Score=19.99 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=33.4
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9636 82 PQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEE 123 (181)
Q Consensus 82 p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~ 123 (181)
|....+..|-.-|.++..-+++-.++.+.+|.+...+-..|.
T Consensus 13 ~~~EvL~eIKeAE~~A~~iVeeA~~ea~~ii~eAreeAkeI~ 54 (56)
T 2k6i_A 13 SVMEAIKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAKKLI 54 (56)
T ss_dssp CCTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567888888888888888888999999988877766664
No 13
>2lj9_A CP12 domain-containing protein 2; helix, protein binding, intrinsically disordered protein; NMR {Arabidopsis thaliana}
Probab=32.13 E-value=15 Score=26.62 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCC-CCCCHHHHHHhCCCCCC
Q psy9636 90 INEEEKQTMAEIKKWIEE---------SQVRIAGYKKEIEDEEALPPV-SEMTMQEYCLAYPECAY 145 (181)
Q Consensus 90 I~a~e~~a~~~a~~~~~~---------s~~rI~elekeL~~I~~~~P~-e~mTvdd~~~a~Pe~~~ 145 (181)
|+..-.+++++|.+..+. .=.++.+|+++.+.-..-.+= +...+|.||+.+|+...
T Consensus 28 L~e~Ie~ai~eAr~~Ca~g~~S~eCa~AWd~VEELqAeashqr~~~~~~~~t~lE~yCdeNPea~E 93 (99)
T 2lj9_A 28 ISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKDNPETNE 93 (99)
T ss_dssp --------------------------------------------------CCHHHHHHHHCTTTTS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhChhccccCCCChHHHHHHHCCCchH
Confidence 444444455555555442 223567788887777666552 25569999999999764
No 14
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=32.03 E-value=72 Score=24.35 Aligned_cols=63 Identities=10% Similarity=0.170 Sum_probs=41.4
Q ss_pred hhHHHHHHHhhccc-ccCCCC----chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy9636 65 GLVDQFQKQYEALQ-IPFPQD----TETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEALPP 127 (181)
Q Consensus 65 ~lVD~fEK~y~s~k-vp~p~d----~~~~~I~a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~~~P 127 (181)
++...|.|-.+.+. +..|.+ .|....-..-+-++..+..+....++=++.+...+..|.+.+|
T Consensus 69 ~~~E~~MK~LE~LDsl~i~~~~t~~~q~~~~R~KRK~lV~~IQ~~L~~~D~l~~~i~~~~~~~~~~~~ 136 (137)
T 1t7s_A 69 YFNEEAERHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRLQEYQSVLNGDIP 136 (137)
T ss_dssp HHHHHHHHHHHHHHTEEECCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHhhcccCCcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccC
Confidence 45567777766665 444443 3456666777888999999999999999999998888887765
No 15
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.74 E-value=1.1e+02 Score=20.87 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy9636 98 MAEIKKWIEESQVRIAGYKKEIEDEEALPP 127 (181)
Q Consensus 98 ~~~a~~~~~~s~~rI~elekeL~~I~~~~P 127 (181)
+..-+.-+.+-+.+|.+|+.+|.++++..|
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKfrSVl~ 71 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKYRSVIR 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 333444455556666777777777766543
No 16
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=30.63 E-value=87 Score=23.25 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCHHHH
Q psy9636 97 TMAEIKKWIEESQVRIAGYKKEIEDEEALP-PVSEMTMQEY 136 (181)
Q Consensus 97 a~~~a~~~~~~s~~rI~elekeL~~I~~~~-P~e~mTvdd~ 136 (181)
+..+....+..++..|.+|++.+.-+++.+ .| .++-+|+
T Consensus 68 ~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF-~l~~~Ei 107 (130)
T 4dnd_A 68 TTNELRNGLRSIEWDLEDLEETIGIVEANPGKF-KLPAGDL 107 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-CCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc-CCCHHHH
Confidence 444455566666666667777776666654 45 3555444
No 17
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=27.87 E-value=63 Score=20.33 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q psy9636 104 WIEESQVRIAGYKKEIEDEEAL 125 (181)
Q Consensus 104 ~~~~s~~rI~elekeL~~I~~~ 125 (181)
++.....+|..|+..|..+++.
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888877763
No 18
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=25.82 E-value=88 Score=20.29 Aligned_cols=30 Identities=10% Similarity=0.295 Sum_probs=23.2
Q ss_pred cHHHHhhhCCCchhhHHHHHHHhhHHHHHHHhc
Q psy9636 12 NWSELTSRLTDADRPNFNTFKAKYDGYLRKVSA 44 (181)
Q Consensus 12 dWa~l~~~vp~~~~~~l~afK~r~d~~~~~l~~ 44 (181)
+|+.|+..||+-+..+ .|.|...+.++...
T Consensus 30 ~W~~Ia~~~~~Rt~~q---~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 30 RWTKISKLIGSRTVLQ---VKSYARQYFKNKVK 59 (72)
T ss_dssp CHHHHHHHHSSSCHHH---HHHHHHHHHHHHSC
T ss_pred CHHHHHHHcCCCCHHH---HHHHHHHHHHHHHh
Confidence 9999999999877654 46677777777655
No 19
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=25.43 E-value=1e+02 Score=17.78 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9636 108 SQVRIAGYKKEIEDEE 123 (181)
Q Consensus 108 s~~rI~elekeL~~I~ 123 (181)
...+|..++.+++.|+
T Consensus 14 ieeeiqaikeeiaaik 29 (36)
T 1bb1_B 14 IEEEIQAIKEEIAAIK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444445554443
No 20
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=24.95 E-value=1.2e+02 Score=18.46 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9636 99 AEIKKWIEESQVRIAGYKKEIEDEEA 124 (181)
Q Consensus 99 ~~a~~~~~~s~~rI~elekeL~~I~~ 124 (181)
.+...--...++||..|+..|..|..
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33334445566788888887777654
No 21
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=24.73 E-value=68 Score=26.73 Aligned_cols=12 Identities=8% Similarity=0.263 Sum_probs=8.2
Q ss_pred HhhcccccCC-CC
Q psy9636 73 QYEALQIPFP-QD 84 (181)
Q Consensus 73 ~y~s~kvp~p-~d 84 (181)
.+..+.||.| .-
T Consensus 342 ~l~~~~IplP~pl 354 (406)
T 1ydx_A 342 LAGEIKVPYVKSF 354 (406)
T ss_dssp HHHTCEEEECSCH
T ss_pred HHhccEecCCCCH
Confidence 4567788887 43
No 22
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.61 E-value=1.3e+02 Score=18.47 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q psy9636 101 IKKWIEESQVRIAGYKKEIEDEEA 124 (181)
Q Consensus 101 a~~~~~~s~~rI~elekeL~~I~~ 124 (181)
+..-++...+.|.+|++.|..++.
T Consensus 14 VdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 14 VDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556677777777766654
No 23
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=24.45 E-value=1.6e+02 Score=21.88 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9636 92 EEEKQTMAEIKKWIEESQVRIAGYKKEIEDEEA 124 (181)
Q Consensus 92 a~e~~a~~~a~~~~~~s~~rI~elekeL~~I~~ 124 (181)
.+-+++++..+.+....++.|++.++.+.+.+.
T Consensus 71 ~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~ 103 (119)
T 2avr_X 71 SQYQELASKYEDALKKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778888899999999999999998887654
No 24
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.49 E-value=1.4e+02 Score=18.71 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9636 96 QTMAEIKKWIEESQVRIAGYKKEIEDEEA 124 (181)
Q Consensus 96 ~a~~~a~~~~~~s~~rI~elekeL~~I~~ 124 (181)
.++...+.--+..++.|+.|++.+++++.
T Consensus 24 nivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 24 NIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 35555566666777888888888888763
No 25
>1vls_A TAR, aspartate receptor; chemotaxis, bacterial chemotaxis receptor, unbound; 1.85A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1vlt_A 1was_A 1wat_A 1jmw_A
Probab=23.22 E-value=44 Score=23.51 Aligned_cols=14 Identities=7% Similarity=0.247 Sum_probs=7.6
Q ss_pred chhHHHHHHHhhcc
Q psy9636 64 PGLVDQFQKQYEAL 77 (181)
Q Consensus 64 ~~lVD~fEK~y~s~ 77 (181)
..++++++..|..+
T Consensus 83 ~~l~~~l~~~~~~~ 96 (146)
T 1vls_A 83 AEASANVDEKYQRY 96 (146)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555544
No 26
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.44 E-value=1.4e+02 Score=20.90 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=11.8
Q ss_pred hhHHHHHHHhhccccc
Q psy9636 65 GLVDQFQKQYEALQIP 80 (181)
Q Consensus 65 ~lVD~fEK~y~s~kvp 80 (181)
|..|.+.++..+++.-
T Consensus 2 ~~MdaIKkKm~~lk~e 17 (101)
T 3u1c_A 2 GHMDAIKKKMQMLKLD 17 (101)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHH
Confidence 5678888888877753
No 27
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=22.08 E-value=59 Score=20.69 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy9636 103 KWIEESQVRIAGYKKEIEDEEA 124 (181)
Q Consensus 103 ~~~~~s~~rI~elekeL~~I~~ 124 (181)
..+...+.+|.+|+..|+.+.+
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5566677788888888876654
No 28
>3e1k_B Lactose regulatory protein LAC9; transctiption, repressor, trans-activation, carbohydrate metabolism, DNA-binding, galactose metabolism; 3.00A {Kluyveromyces lactis}
Probab=22.02 E-value=39 Score=17.88 Aligned_cols=12 Identities=17% Similarity=0.110 Sum_probs=9.6
Q ss_pred CCCCCHHHHHHh
Q psy9636 128 VSEMTMQEYCLA 139 (181)
Q Consensus 128 ~e~mTvdd~~~a 139 (181)
|...||||++..
T Consensus 5 fntttmddvyny 16 (22)
T 3e1k_B 5 FNTTTMDDVYNY 16 (26)
T ss_pred cccccHHHHHHH
Confidence 778899998754
No 29
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=21.48 E-value=50 Score=27.37 Aligned_cols=21 Identities=5% Similarity=0.251 Sum_probs=17.6
Q ss_pred ccHHHHhhhCCCchhhHHHHH
Q psy9636 11 INWSELTSRLTDADRPNFNTF 31 (181)
Q Consensus 11 idWa~l~~~vp~~~~~~l~af 31 (181)
=||..|+..|+..+..+...|
T Consensus 153 KDW~~IAk~VgTKT~~QcKnf 173 (235)
T 2iw5_B 153 RDFQAISDVIGNKSVVQVKNF 173 (235)
T ss_dssp SCHHHHHHHHSSCCHHHHHHH
T ss_pred cCHHHHHHHcCCCCHHHHHHH
Confidence 489999999998888887766
No 30
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=20.35 E-value=1.5e+02 Score=24.60 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=19.3
Q ss_pred HhhcccccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9636 73 QYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAG 114 (181)
Q Consensus 73 ~y~s~kvp~p~d~~~~~I~a~e~~a~~~a~~~~~~s~~rI~e 114 (181)
.++.+.||.|.-..-..|-+.-..+.+.+.+.++..++.++.
T Consensus 151 ~l~~~~iplPpl~EQ~~Iv~~Ld~~~~~id~~~~~~~~~~~~ 192 (464)
T 2y7c_A 151 SFDLINIPIPPLAEQKIIAEKLDTLLAQVDSTKARFEQIPQI 192 (464)
T ss_dssp HHHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777754333334333333334444444444433333
No 31
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.33 E-value=1.1e+02 Score=18.30 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy9636 104 WIEESQVRIAGYKKEIEDEEA 124 (181)
Q Consensus 104 ~~~~s~~rI~elekeL~~I~~ 124 (181)
+..+.+..|..|+..|..+++
T Consensus 9 TLeEtkeQi~~l~~kl~~Lke 29 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQE 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566665555543
No 32
>2l5b_A Activator of apoptosis harakiri; BCL-2, BH3-only, transmembrane domain; NMR {Synthetic}
Probab=20.32 E-value=15 Score=21.09 Aligned_cols=7 Identities=57% Similarity=1.621 Sum_probs=5.4
Q ss_pred CCCCCCC
Q psy9636 149 KPTFWPH 155 (181)
Q Consensus 149 ~pt~wpH 155 (181)
-|+|||-
T Consensus 5 lp~yw~w 11 (32)
T 2l5b_A 5 LPTYWPW 11 (32)
T ss_dssp CCCCHHH
T ss_pred cccchHH
Confidence 4889985
No 33
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=20.18 E-value=46 Score=18.25 Aligned_cols=12 Identities=17% Similarity=0.110 Sum_probs=9.6
Q ss_pred CCCCCHHHHHHh
Q psy9636 128 VSEMTMQEYCLA 139 (181)
Q Consensus 128 ~e~mTvdd~~~a 139 (181)
|...||||++..
T Consensus 3 FNTTTMDDvyNy 14 (26)
T 3bts_E 3 FNTTTMDDVYNY 14 (26)
T ss_pred cccccHHHHHHH
Confidence 678899998754
Done!