RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9636
(181 letters)
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial
{Cow (Bos taurus) [TaxId: 9913]}
Length = 120
Score = 131 bits (330), Expect = 2e-40
Identities = 38/116 (32%), Positives = 67/116 (57%)
Query: 5 RFTGSKINWSELTSRLTDADRPNFNTFKAKYDGYLRKVSALPEAPPKIDWALYKNKIPVP 64
+ I+W + + N+ K+ + +++ LPE PP IDWA YK +
Sbjct: 1 KLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKA 60
Query: 65 GLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKWIEESQVRIAGYKKEIE 120
GLVD F+K++ AL++P P+D TA+++ EEK+ + +++ +S+ RI Y+KE+E
Sbjct: 61 GLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELE 116
>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 58
Score = 26.9 bits (60), Expect = 0.28
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 140 YPECAYDPEKPTFWPHDEENQITKEDEEWWEKRQKNLVG 178
Y A + + TF + + D WW+ G
Sbjct: 9 YDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTG 47
>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 27.3 bits (60), Expect = 0.59
Identities = 10/57 (17%), Positives = 21/57 (36%)
Query: 122 EEALPPVSEMTMQEYCLAYPECAYDPEKPTFWPHDEENQITKEDEEWWEKRQKNLVG 178
+E P + Y A + ++ + + I K + WW R+ ++ G
Sbjct: 3 DETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTG 59
>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 25.4 bits (56), Expect = 1.1
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 136 YCLA-YPECAYDPEKPTFWPHDEENQITKEDEEWWEKRQKNLVG 178
+ A Y A + ++ F + + + WW R N +G
Sbjct: 3 WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLG 46
>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 25.5 bits (56), Expect = 1.2
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 132 TMQEYCLA-YPECAYDPEKPTFWPHDEENQITKEDEEWWEKRQKNLVGG 179
T + A + A ++ TF + K++ WW
Sbjct: 4 TFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQL 52
>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 24.3 bits (53), Expect = 2.9
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 145 YDPEKP---TFWPHDEENQITKEDEEWWEKRQKNLVG 178
Y+ +P F D ++K +EEW E K VG
Sbjct: 14 YEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVG 50
>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 23.9 bits (52), Expect = 3.5
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 136 YCLA-YPECAYDPEKPTFWPHDEENQITKEDEEWWEKRQK 174
+ A Y A + + TF +D+ I D++WW +
Sbjct: 2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELE 41
>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 55
Score = 23.5 bits (51), Expect = 5.4
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 145 YDPEKP---TFWPHDEENQITKEDEEWWEKRQKNLVG 178
Y + P T D + +++WW+ + G
Sbjct: 9 YQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQG 45
>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 23.7 bits (51), Expect = 7.1
Identities = 6/37 (16%), Positives = 9/37 (24%), Gaps = 3/37 (8%)
Query: 145 YDPEKP---TFWPHDEENQITKEDEEWWEKRQKNLVG 178
+ + D E+ WWE G
Sbjct: 19 FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTG 55
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 23.2 bits (50), Expect = 7.3
Identities = 4/35 (11%), Positives = 10/35 (28%)
Query: 140 YPECAYDPEKPTFWPHDEENQITKEDEEWWEKRQK 174
Y + +F + + + +WW
Sbjct: 9 YDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSL 43
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha
subunit {Oxytricha nova [TaxId: 200597]}
Length = 169
Score = 24.2 bits (52), Expect = 8.3
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 54 WALYKNKIPVPGLVDQFQKQYEALQIPFPQDTETAKINEEEKQTMAEIKKW 104
WAL+ + + + + PF ++ A I + E + ++KW
Sbjct: 111 WALF-STDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNLRKW 160
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium
tuberculosis, GroEL2 [TaxId: 1773]}
Length = 184
Score = 24.4 bits (53), Expect = 8.7
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 90 INEEEKQTMAEIKKWIEESQVRIAGYKKEIEDEE 123
+ +++ T+ E + R+A ++EIE+ +
Sbjct: 133 VVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSD 166
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.131 0.401
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 751,062
Number of extensions: 35222
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 26
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.5 bits)