BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9637
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 263 bits (672), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 138/181 (76%), Gaps = 5/181 (2%)
Query: 162 NPSFETSAPTPKPQR-----DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLN 216
+ + S PQ+ DKK FLE+IR+ALYASKI+SYAQGFML+RQAA GW LN
Sbjct: 317 DERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLN 376
Query: 217 YGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSA 276
YGGIALMWRGGCIIRSVFLG IK AFD+NP L NLLLD FFK A+ Q SWR VS
Sbjct: 377 YGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGV 436
Query: 277 LLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGG 336
GIP P F TAL+FYDGYR + LPA+L+QAQRDYFGAHTYELLA PG+F+HTNWTGHGG
Sbjct: 437 QAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGG 496
Query: 337 N 337
Sbjct: 497 T 497
Score = 248 bits (633), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 117/149 (78%), Positives = 132/149 (88%), Gaps = 1/149 (0%)
Query: 339 IAAKVGS-EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAV 397
IAAKVG+ EPCCDWVG++GAGHFVKMVHNGIEYGDMQLICEAYHLM LGM+ DEM+
Sbjct: 182 IAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQA 241
Query: 398 FEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVT 457
FEDWNK ELDSFLIEIT +ILKF+DTDG L+ KI+D AGQKGTGKWTAISAL+YGVPVT
Sbjct: 242 FEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVT 301
Query: 458 LIGESVFSRCLSSLFDERQKASQVLQGPN 486
LIGE+VF+RCLSSL DER +AS+ L+GP
Sbjct: 302 LIGEAVFARCLSSLKDERIQASKKLKGPQ 330
Score = 232 bits (591), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 120/168 (71%), Positives = 140/168 (83%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
A+ DI LIGLAVMGQNLILNMNDHGF V A+NRT +KVD FLANEAKGT ++GA SL+E+
Sbjct: 24 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEM 83
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V LKKPRR+++LVKAG AVDDFI+KLVPLL+ GDIIIDGGNSEY+DT RR + L+AKG+
Sbjct: 84 VSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGI 143
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAP 170
L+VG GVSGGE+GARYGPSLMPGGN AWP +K IFQ + T P
Sbjct: 144 LFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEP 191
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 262 bits (670), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 138/181 (76%), Gaps = 5/181 (2%)
Query: 162 NPSFETSAPTPKPQR-----DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLN 216
+ + S PQ+ DKK FLE+IR+ALYASKI+SYAQGFML+RQAA GW LN
Sbjct: 296 DERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLN 355
Query: 217 YGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSA 276
YGGIALMWRGGCIIRSVFLG IK AFD+NP L NLLLD FFK A+ Q SWR VS
Sbjct: 356 YGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGV 415
Query: 277 LLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGG 336
GIP P F TAL+FYDGYR + LPA+L+QAQRDYFGAHTYELLA PG+F+HTNWTGHGG
Sbjct: 416 QAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGG 475
Query: 337 N 337
Sbjct: 476 T 476
Score = 248 bits (632), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 117/149 (78%), Positives = 132/149 (88%), Gaps = 1/149 (0%)
Query: 339 IAAKVGS-EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAV 397
IAAKVG+ EPCCDWVG++GAGHFVKMVHNGIEYGDMQLICEAYHLM LGM+ DEM+
Sbjct: 161 IAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQA 220
Query: 398 FEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVT 457
FEDWNK ELDSFLIEIT +ILKF+DTDG L+ KI+D AGQKGTGKWTAISAL+YGVPVT
Sbjct: 221 FEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVT 280
Query: 458 LIGESVFSRCLSSLFDERQKASQVLQGPN 486
LIGE+VF+RCLSSL DER +AS+ L+GP
Sbjct: 281 LIGEAVFARCLSSLKDERIQASKKLKGPQ 309
Score = 231 bits (590), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/168 (71%), Positives = 140/168 (83%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
A+ DI LIGLAVMGQNLILNMNDHGF V A+NRT +KVD FLANEAKGT ++GA SL+E+
Sbjct: 3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEM 62
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V LKKPRR+++LVKAG AVDDFI+KLVPLL+ GDIIIDGGNSEY+DT RR + L+AKG+
Sbjct: 63 VSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGI 122
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAP 170
L+VG GVSGGE+GARYGPSLMPGGN AWP +K IFQ + T P
Sbjct: 123 LFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEP 170
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 254 bits (650), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 119/175 (68%), Positives = 135/175 (77%), Gaps = 1/175 (0%)
Query: 159 QKLNPSFETSAPTPKP-QRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217
+++ S + P P + DKK FLE+IR+ALYASKI+SYAQGFML+RQAA GW LNY
Sbjct: 295 ERIQASKKLKGPQNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNY 354
Query: 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL 277
GGIALMWRGGCIIRSVFLG IK AFD+NP L NLLLD FFK A+ Q SWR +S
Sbjct: 355 GGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQ 414
Query: 278 LGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332
GIP P F TAL+FYDGYR LPANL+QAQRDYFGAHTYELLA PG+F+HTNWT
Sbjct: 415 AGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWT 469
Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 114/149 (76%), Positives = 128/149 (85%), Gaps = 1/149 (0%)
Query: 339 IAAKVGS-EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAV 397
IAAKVG+ EPCCDWVG+ GAGHFVKMVHNGIEYGDMQLICEAYHLM LG+ H EM+
Sbjct: 159 IAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKA 218
Query: 398 FEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVT 457
FE+WNK ELDSFLIEIT ILKF+D DG L+ KI+D AGQKGTGKWTAISAL+YGVPVT
Sbjct: 219 FEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVT 278
Query: 458 LIGESVFSRCLSSLFDERQKASQVLQGPN 486
LIGE+VF+RCLSSL DER +AS+ L+GP
Sbjct: 279 LIGEAVFARCLSSLKDERIQASKKLKGPQ 307
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/169 (71%), Positives = 140/169 (82%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
A+ DI LIGLAVMGQNLILNMNDHGF V A+NRT +KVD FLANEAKGT ++GAHSLEE+
Sbjct: 1 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEM 60
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V LKKPRR+++LVKAG AVD+FI+KLVPLL+ GDIIIDGGNSEY+DT RR + L+ KG+
Sbjct: 61 VSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI 120
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPT 171
L+VG GVSGGEDGARYGPSLMPGGN AWP +K IFQ + T P
Sbjct: 121 LFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPC 169
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 228 bits (580), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 108/189 (57%), Positives = 134/189 (70%), Gaps = 13/189 (6%)
Query: 162 NPSFETSAPTPKPQ------RDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKL 215
N S P P+ +D+++F++++ QALYASKI+SYAQGFML+R+AA +GWKL
Sbjct: 301 NERIRASKVLPGPEVPKDAVKDREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKL 360
Query: 216 NYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQS 275
N IALMWRGGCIIRSVFLG I A+ + P L NLL + FF DA+ QS WR ++ +
Sbjct: 361 NNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKSIALA 420
Query: 276 ALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPG-------KFVH 328
GIPTPAF+TAL+FYDGYRS+RLPANLLQAQRDYFGAHT+ +L K +H
Sbjct: 421 TTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDKDIH 480
Query: 329 TNWTGHGGN 337
NWTGHGGN
Sbjct: 481 INWTGHGGN 489
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/149 (70%), Positives = 121/149 (81%)
Query: 337 NSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
SI+AK EPCC+WVG GAGH+VKMVHNGIEYGDMQLICEAY +M G + E+S
Sbjct: 165 QSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISD 224
Query: 397 VFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPV 456
VF WN G LDSFL+EIT+DILKF D DG PLVEKI D AGQKGTGKWTAI+ALD G+PV
Sbjct: 225 VFAKWNNGVLDSFLVEITRDILKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPV 284
Query: 457 TLIGESVFSRCLSSLFDERQKASQVLQGP 485
TLIGE+VF+RCLS+L +ER +AS+VL GP
Sbjct: 285 TLIGEAVFARCLSALKNERIRASKVLPGP 313
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 132/157 (84%)
Query: 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
D GLIGLAVMGQNLILN DHGFTV AYNRT +KVD FLANEAKG +IIGA S+E+ +
Sbjct: 12 DFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISK 71
Query: 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125
LK+PR+VM+LVKAG+ VD I+++VPLLEKGDIIIDGGNS + D++RR + L+ KG+L+V
Sbjct: 72 LKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFV 131
Query: 126 GCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLN 162
G GVSGGE+GARYGPSLMPGG+ AWP +K IFQ ++
Sbjct: 132 GSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSIS 168
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 124/174 (71%), Gaps = 2/174 (1%)
Query: 159 QKLNPSFETSAPTPKP-QRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217
+++ S + P KP + D+ F+E +R+ALY SKI SYAQGF M+ A+E + W L Y
Sbjct: 297 ERVKASKVLAGPAVKPFEGDRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNLRY 356
Query: 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL 277
G IA+++RGGCIIR+ FL IK A+D++PALSNLLLD +FKD + Q + R +V+ +A+
Sbjct: 357 GDIAMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYFKDIVERYQDALREIVATAAM 416
Query: 278 LGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNW 331
GIP P A+ALA+YD YR+ LPANL+QAQRDYFGAHTYE + G F HT W
Sbjct: 417 RGIPVPGSASALAYYDSYRTAVLPANLIQAQRDYFGAHTYERVDKEGIF-HTEW 469
Score = 192 bits (488), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 113/150 (75%), Gaps = 1/150 (0%)
Query: 337 NSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
+IAAKV EPC ++G GAGH+VKMVHNGIEYGDMQLI EAY L+ LGM E+
Sbjct: 159 EAIAAKVDGEPCTTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHE 218
Query: 397 VFEDWNKGELDSFLIEITKDIL-KFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVP 455
VF DWNKGEL+S+LIEIT DI K + G PLV+ I D AGQKGTGKWT+ +ALD GVP
Sbjct: 219 VFADWNKGELNSYLIEITADIFTKIDEETGKPLVDVILDKAGQKGTGKWTSQNALDLGVP 278
Query: 456 VTLIGESVFSRCLSSLFDERQKASQVLQGP 485
+ +I ESVF+R LS++ DER KAS+VL GP
Sbjct: 279 LPIITESVFARFLSAMKDERVKASKVLAGP 308
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 174/316 (55%), Gaps = 24/316 (7%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
AK IG+IGLAVMG+NL LN+ G++V YNR K D FL EAKG NI+G +S+EE
Sbjct: 4 AKHQIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFL-QEAKGKNIVGTYSIEEF 62
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V L+KPR+++++VKAG+ D I++L P LEKGDI+IDGGN+ ++DT RR+K L G+
Sbjct: 63 VNALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGI 122
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRD-KKEF 181
++G GVSGGE+GA GPS+MPGG A ++PIF+ + + T D +
Sbjct: 123 HFIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHY 182
Query: 182 LENIRQALYASKIVSYAQGFMLMRQ-----AAEIHGWKLNYGGIALMWRGGCIIRSVFLG 236
++ + + + A+ + L++ AAE+H + W G + + +L
Sbjct: 183 VKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELH-------EVFADWNKGEL--NSYLI 233
Query: 237 NIKA-AFDK-NPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL-LGIPTPAFATAL--AF 291
I A F K + L+D A W SQ+AL LG+P P ++ F
Sbjct: 234 EITADIFTKIDEETGKPLVDVILDKAGQKGTGKW---TSQNALDLGVPLPIITESVFARF 290
Query: 292 YDGYRSKRLPANLLQA 307
+ +R+ A+ + A
Sbjct: 291 LSAMKDERVKASKVLA 306
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 124/174 (71%), Gaps = 2/174 (1%)
Query: 159 QKLNPSFETSAPTPKP-QRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217
+++ S + P KP + D+ F+E +R+ALY SKI SYAQGF M+ A+E + W L Y
Sbjct: 296 ERVKASKVLAGPAVKPFEGDRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNLRY 355
Query: 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL 277
G IA+++RGGCIIR+ FL IK A+D++PALSNLLLD +FKD + Q + R +V+ +A+
Sbjct: 356 GDIAMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYFKDIVERYQDALREIVATAAM 415
Query: 278 LGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNW 331
GIP P A+ALA+YD YR+ LPANL+QAQRDYFGAHTYE + G F HT W
Sbjct: 416 RGIPVPGSASALAYYDSYRTAVLPANLIQAQRDYFGAHTYERVDKEGIF-HTEW 468
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 113/150 (75%), Gaps = 1/150 (0%)
Query: 337 NSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
+IAAKV EPC ++G GAGH+VKMVHNGIEYGDMQLI EAY L+ LGM E+
Sbjct: 158 EAIAAKVDGEPCTTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHE 217
Query: 397 VFEDWNKGELDSFLIEITKDIL-KFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVP 455
VF DWNKGEL+S+LIEIT DI K + G PLV+ I D AGQKGTGKWT+ +ALD GVP
Sbjct: 218 VFADWNKGELNSYLIEITADIFTKIDEETGKPLVDVILDKAGQKGTGKWTSQNALDLGVP 277
Query: 456 VTLIGESVFSRCLSSLFDERQKASQVLQGP 485
+ +I ESVF+R LS++ DER KAS+VL GP
Sbjct: 278 LPIITESVFARFLSAMKDERVKASKVLAGP 307
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 174/316 (55%), Gaps = 24/316 (7%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
AK IG+IGLAVMG+NL LN+ G++V YNR K D FL EAKG NI+G +S+EE
Sbjct: 3 AKHQIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFL-QEAKGKNIVGTYSIEEF 61
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V L+KPR+++++VKAG+ D I++L P LEKGDI+IDGGN+ ++DT RR+K L G+
Sbjct: 62 VNALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGI 121
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRD-KKEF 181
++G GVSGGE+GA GPS+MPGG A ++PIF+ + + T D +
Sbjct: 122 HFIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHY 181
Query: 182 LENIRQALYASKIVSYAQGFMLMRQ-----AAEIHGWKLNYGGIALMWRGGCIIRSVFLG 236
++ + + + A+ + L++ AAE+H + W G + + +L
Sbjct: 182 VKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELH-------EVFADWNKGEL--NSYLI 232
Query: 237 NIKA-AFDK-NPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL-LGIPTPAFATAL--AF 291
I A F K + L+D A W SQ+AL LG+P P ++ F
Sbjct: 233 EITADIFTKIDEETGKPLVDVILDKAGQKGTGKW---TSQNALDLGVPLPIITESVFARF 289
Query: 292 YDGYRSKRLPANLLQA 307
+ +R+ A+ + A
Sbjct: 290 LSAMKDERVKASKVLA 305
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218
Q++ S S P +P DK EF+E +R+ALY KIVSYAQGF +R A+E + W LNYG
Sbjct: 307 QRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYG 366
Query: 219 GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALL 278
IA ++R GCIIR+ FL I A+ +NP ++NLLL P+FK Q + R VV+ + +
Sbjct: 367 EIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQI 426
Query: 279 GIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNW 331
GIP P F+ A+A+YD YR+ LPANL+QAQRDYFGAHTY+ + G F HT W
Sbjct: 427 GIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVF-HTEW 478
Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/141 (60%), Positives = 106/141 (75%)
Query: 346 EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGE 405
EPC ++G GAGH+VKMVHNGIEYGDMQLI EAY L+ G L ++++E++ F +WN GE
Sbjct: 179 EPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGE 238
Query: 406 LDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFS 465
L S+LI+ITKDI KD DG LV+ I D A KGTGKWT+ SALD G P++LI ESVF+
Sbjct: 239 LSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFA 298
Query: 466 RCLSSLFDERQKASQVLQGPN 486
R +SSL D+R AS+VL GP
Sbjct: 299 RYISSLKDQRVAASKVLSGPQ 319
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 155/282 (54%), Gaps = 10/282 (3%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
+K IG++G+AVMG+NL LN+ G+TV +NR+ K + +A E G ++ ++++E
Sbjct: 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIA-ENPGKKLVPYYTVKEF 72
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V++L+ PRR++++VKAG+ D ID L P L+KGDIIIDGGN+ +QDT RR++ L A+G
Sbjct: 73 VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF 132
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAP--TPKPQRDKKE 180
++G GVSGGE+GA GPS+MPGG A+ + PI K+ E P T
Sbjct: 133 NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH 192
Query: 181 FLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA 240
+++ + + + A+ + L++ + +L W G + S + K
Sbjct: 193 YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEEL--AQTFTEWNNGE-LSSYLIDITKD 249
Query: 241 AFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL-LGIP 281
F K N L+D +A + W SQSAL LG P
Sbjct: 250 IFTKKDEDGNYLVDVILDEAANKGTGKW---TSQSALDLGEP 288
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 117/150 (78%), Gaps = 3/150 (2%)
Query: 339 IAAKVGSE--PCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
IAAK + PC ++G GAGH+VKMVHNGIEYGDMQLI E+Y L+ LG+S+ E+ A
Sbjct: 159 IAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQA 218
Query: 397 VFEDWNKGELDSFLIEITKDILKFKDTDG-APLVEKIKDYAGQKGTGKWTAISALDYGVP 455
+FE+WN+GELDS+LIEITK++LK KD +G +V+KI D AG KGTGKWT+ SALD GVP
Sbjct: 219 IFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVP 278
Query: 456 VTLIGESVFSRCLSSLFDERQKASQVLQGP 485
+ LI ESVF+R +S+ DER KAS+VL GP
Sbjct: 279 LPLITESVFARYISTYKDERVKASKVLSGP 308
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218
+++ S S P DKKE +E IR+ALY SKI+SYAQGF +R+A+E W L YG
Sbjct: 297 ERVKASKVLSGPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYG 356
Query: 219 GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALL 278
IA +WR GCIIR+ FL NI AFDK+ L NLLLD +F D Q + R VVS +
Sbjct: 357 TIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQA 416
Query: 279 GIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNW 331
G P P F +A+++YD YRS+ LPANL+QAQRDYFGAHTYE G F H +W
Sbjct: 417 GTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIF-HYDW 468
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
A+ + G++G+AVMG+NL LN+ G+TV YNRTT+K + E + N++ +LEE
Sbjct: 2 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF-KEHQDKNLVFTKTLEEF 60
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V +L+KPRR+M++V+AG+A D I L+PLL+ GDI+IDGGN+ + DT RR+ L G+
Sbjct: 61 VGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGI 120
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
++G GVSGGE GA GPS+MPGG A+ + PIF+++
Sbjct: 121 NFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQI 159
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 117/150 (78%), Gaps = 3/150 (2%)
Query: 339 IAAKVGSE--PCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
IAAK + PC ++G GAGH+VKMVHNGIEYGDMQLI E+Y L+ LG+S+ E+ A
Sbjct: 160 IAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQA 219
Query: 397 VFEDWNKGELDSFLIEITKDILKFKDTDG-APLVEKIKDYAGQKGTGKWTAISALDYGVP 455
+FE+WN+GELDS+LIEITK++LK KD +G +V+KI D AG KGTGKWT+ SALD GVP
Sbjct: 220 IFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVP 279
Query: 456 VTLIGESVFSRCLSSLFDERQKASQVLQGP 485
+ LI ESVF+R +S+ DER KAS+VL GP
Sbjct: 280 LPLITESVFARYISTYKDERVKASKVLSGP 309
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218
+++ S S P DKKE +E IR+ALY SKI+SYAQGF +R+A+E W L YG
Sbjct: 298 ERVKASKVLSGPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYG 357
Query: 219 GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALL 278
IA +WR GCIIR+ FL NI AFDK+ L NLLLD +F D Q + R VVS +
Sbjct: 358 TIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQA 417
Query: 279 GIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNW 331
G P P F +A+++YD YRS+ LPANL+QAQRDYFGAHTYE G F H +W
Sbjct: 418 GTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIF-HYDW 469
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
A+ + G++G+AVMG+NL LN+ G+TV YNRTT+K + E + N++ +LEE
Sbjct: 3 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF-KEHQDKNLVFTKTLEEF 61
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V +L+KPRR+M++V+AG+A D I L+PLL+ GDI+IDGGN+ + DT RR+ L G+
Sbjct: 62 VGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGI 121
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
++G GVSGGE GA GPS+MPGG A+ + PIF+++
Sbjct: 122 NFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQI 160
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 117/150 (78%), Gaps = 3/150 (2%)
Query: 339 IAAKVGSE--PCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
IAAK + PC ++G GAGH+VKMVHNGIEYGDMQLI E+Y L+ LG+S+ E+ A
Sbjct: 161 IAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQA 220
Query: 397 VFEDWNKGELDSFLIEITKDILKFKDTDG-APLVEKIKDYAGQKGTGKWTAISALDYGVP 455
+FE+WN+GELDS+LIEITK++LK KD +G +V+KI D AG KGTGKWT+ SALD GVP
Sbjct: 221 IFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVP 280
Query: 456 VTLIGESVFSRCLSSLFDERQKASQVLQGP 485
+ LI ESVF+R +S+ DER KAS+VL GP
Sbjct: 281 LPLITESVFARYISTYKDERVKASKVLSGP 310
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218
+++ S S P DKKE +E IR+ALY SKI+SYAQGF +R+A+E W L YG
Sbjct: 299 ERVKASKVLSGPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYG 358
Query: 219 GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALL 278
IA +WR GCIIR+ FL NI AFDK+ L NLLLD +F D Q + R VVS +
Sbjct: 359 TIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQA 418
Query: 279 GIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNW 331
G P P F +A+++YD YRS+ LPANL+QAQRDYFGAHTYE G F H +W
Sbjct: 419 GTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIF-HYDW 470
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
A+ + G++G+AVMG+NL LN+ G+TV YNRTT+K + E + N++ +LEE
Sbjct: 4 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF-KEHQDKNLVFTKTLEEF 62
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V +L+KPRR+M++V+AG+A D I L+PLL+ GDI+IDGGN+ + DT RR+ L G+
Sbjct: 63 VGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGI 122
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
++G GVSGGE GA GPS+MPGG A+ + PIF+++
Sbjct: 123 NFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQI 161
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218
Q++ S S P +P DK EF+E +R+ALY KIVSYAQGF +R A+E + W LNYG
Sbjct: 307 QRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYG 366
Query: 219 GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALL 278
IA ++R GCIIR+ FL I A +NP ++NLLL P+FK Q + R VV+ +
Sbjct: 367 EIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQN 426
Query: 279 GIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNW 331
GIP P F+ A+A+YD YR+ LPANL+QAQRDYFGAHTY+ + G F HT W
Sbjct: 427 GIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVF-HTEW 478
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 85/141 (60%), Positives = 106/141 (75%)
Query: 346 EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGE 405
EPC ++G GAGH+VKMVHNGIEYGDMQLI EAY L+ G L ++++E++ F +WN GE
Sbjct: 179 EPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGE 238
Query: 406 LDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFS 465
L S+LI+ITKDI KD DG LV+ I D A KGTGKWT+ SALD G P++LI ESVF+
Sbjct: 239 LSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFA 298
Query: 466 RCLSSLFDERQKASQVLQGPN 486
R +SSL D+R AS+VL GP
Sbjct: 299 RYISSLKDQRVAASKVLSGPQ 319
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 155/282 (54%), Gaps = 10/282 (3%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
+K IG++G+AVMG+NL LN+ G+TV +NR+ K + +A E G ++ ++++E
Sbjct: 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIA-ENPGKKLVPYYTVKEF 72
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V++L+ PRR++++VKAG+ D ID L P L+KGDIIIDGGN+ +QDT RR++ L A+G
Sbjct: 73 VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF 132
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAP--TPKPQRDKKE 180
++G GVSGGE+GA GPS+MPGG A+ + PI K+ E P T
Sbjct: 133 NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH 192
Query: 181 FLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA 240
+++ + + + A+ + L++ + +L W G + S + K
Sbjct: 193 YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEEL--AQTFTEWNNGE-LSSYLIDITKD 249
Query: 241 AFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL-LGIP 281
F K N L+D +A + W SQSAL LG P
Sbjct: 250 IFTKKDEDGNYLVDVILDEAANKGTGKW---TSQSALDLGEP 288
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218
Q++ S S P +P DK EF+E +R+ALY KIVSYAQGF +R A++ + W LNYG
Sbjct: 307 QRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASDEYNWDLNYG 366
Query: 219 GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALL 278
IA ++R GCIIR+ FL I A+ +N ++NLLL P+FK Q + R VV+ +
Sbjct: 367 EIAKIFRAGCIIRAQFLQKITDAYAQNAGIANLLLAPYFKQIADDYQQALRDVVAYAVQN 426
Query: 279 GIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNW 331
GIP P F+ A+A+YD YRS LPANL+QAQRDYFGAHTY+ G F HT W
Sbjct: 427 GIPVPTFSAAIAYYDSYRSAVLPANLIQAQRDYFGAHTYKRTDKEGIF-HTEW 478
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/141 (59%), Positives = 107/141 (75%)
Query: 346 EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGE 405
EPC ++G GAGH+VKMVHNGIEYGDMQLI EAY L+ G L +S++E++ F +WN+GE
Sbjct: 179 EPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYALLKGGLALSNEELAQTFTEWNEGE 238
Query: 406 LDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFS 465
L S+LI+ITKDI KD +G LV+ I D A KGTGKWT+ S+LD G P++LI ESVF+
Sbjct: 239 LSSYLIDITKDIFTKKDEEGKYLVDVILDEAANKGTGKWTSQSSLDLGEPLSLITESVFA 298
Query: 466 RCLSSLFDERQKASQVLQGPN 486
R +SSL D+R AS+VL GP
Sbjct: 299 RYISSLKDQRVAASKVLSGPQ 319
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 115/168 (68%), Gaps = 1/168 (0%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
+K IG++G+AVMG+NL LN+ G+TV +NR+ K + +A E G ++ ++++E
Sbjct: 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIA-ENPGKKLVPYYTVQEF 72
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V++L+ PRR++++VKAG+ D ID L P L+KGDIIIDGGN+ +QDT RR++ L A+G
Sbjct: 73 VESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF 132
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAP 170
++G GVSGGE+G GPS+MPGG A+ + PI +++ E P
Sbjct: 133 NFIGTGVSGGEEGTLKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEP 180
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
Length = 478
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 95/145 (65%), Gaps = 3/145 (2%)
Query: 18 NLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGT---NIIGAHSLEELVKNLKKPRRVMM 74
NL LN+ + GF V +NRT +K + F+ A N+ ++E +LKKPR+ ++
Sbjct: 15 NLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALI 74
Query: 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGED 134
LV+AG+A D I++L + EKGDI++D GN+ ++D RR++ LEA GL ++G G+SGGE+
Sbjct: 75 LVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEE 134
Query: 135 GARYGPSLMPGGNPAAWPALKPIFQ 159
GAR GP+ PGG + W ++PI +
Sbjct: 135 GARKGPAFFPGGTLSVWEEIRPIVE 159
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 347 PCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDW-NKGE 405
PC G GAG VKM HN EY +Q+ E + ++ A+G+++DE++AV EDW +K
Sbjct: 170 PCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILR-AMGLNNDEVAAVLEDWKSKNF 228
Query: 406 LDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFS 465
L S++++I+ + KD DG+ L E + D G KGTG W+A AL+ GVP + +V S
Sbjct: 229 LKSYMLDISIAAARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVS 288
Query: 466 RCLSSLFDERQ----KASQVLQGPNPTYK 490
R + ERQ A + Q P T K
Sbjct: 289 RQFTMYKTERQANASNAPGITQSPGYTLK 317
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 194 IVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLL 253
I YAQ F +R+ ++H + LN +R GCI++ L + AF+KNP +SNL+
Sbjct: 338 ISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMC 397
Query: 254 DPFFKDAIHATQSSWRAVVSQ-SALLGIPTPAFATALAFYDGYRSKRLP-ANLLQAQRDY 311
F+ I A ++R +V+ ++ L + P + +L + + L L+ QRD
Sbjct: 398 A--FQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDV 455
Query: 312 FGAHTYELLAAPGK 325
FG H YE + G+
Sbjct: 456 FGRHGYERVDKDGR 469
>pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
pdb|4E21|B Chain B, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
Length = 358
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 140/336 (41%), Gaps = 55/336 (16%)
Query: 18 NLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77
+ + + G V Y+ V++ A E +G I GA S+EE L KPR V + V
Sbjct: 36 DXVRRLRKGGHECVVYD---LNVNAVQALEREG--IAGARSIEEFCAKLVKPRVVWLXVP 90
Query: 78 AGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGAR 137
A + VD + + PLL DI+IDGGNS YQD RR+ A+G+ YV G SGG G
Sbjct: 91 A-AVVDSXLQRXTPLLAANDIVIDGGNSHYQDDIRRADQXRAQGITYVDVGTSGGIFGLE 149
Query: 138 YGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKE----------------- 180
G L GG A L P+F+ L P + TP R+K+E
Sbjct: 150 RGYCLXIGGEKQAVERLDPVFRTLAPGIGAAPRTPG--REKREGTAELGYLHCGPSGAGH 207
Query: 181 FLENIRQALYASKIVSYAQGFMLMRQA------------------AEIHGWKLNYGGIAL 222
F++ + + +YA+G ++ A + + + L+ I
Sbjct: 208 FVKXVHNGIEYGLXAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITE 267
Query: 223 MWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPT 282
+WR G +I S L A +P L F + + W V+ + G+P
Sbjct: 268 VWRRGSVISSWLLDLSATALLDSPDLQE-----FQGRVSDSGEGRW--TVAAAIDEGVPA 320
Query: 283 PAFATALAFYDGYRSK---RLPANLLQAQRDYFGAH 315
++AL Y+ + S+ LL A R FG H
Sbjct: 321 HVLSSAL--YERFSSRGEDDFANRLLSAXRYEFGGH 354
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 30/174 (17%)
Query: 322 APGKFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEA-- 379
APG G A++G C G GAGHFVK VHNGIEYG E
Sbjct: 174 APGIGAAPRTPGREKREGTAELGYLHC----GPSGAGHFVKXVHNGIEYGLXAAYAEGLN 229
Query: 380 --YHLMTGALGMSHD----------------EMSAVFEDWNKGE-LDSFLIEITKDILKF 420
+H G G D +++ + E W +G + S+L++++ L
Sbjct: 230 ILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALL- 288
Query: 421 KDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDE 474
+P +++ + G G+WT +A+D GVP ++ +++ R S D+
Sbjct: 289 ----DSPDLQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSALYERFSSRGEDD 338
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 77/160 (48%), Gaps = 12/160 (7%)
Query: 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
++G +GL +MG+ + +N+ +GF V +NRT +K D + + GA E +
Sbjct: 23 EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEH--------GASVCESPAEV 74
Query: 66 LKKPR-RVMMLVKAGSAVDDFIDK--LVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
+KK + + ML +A+ DK ++ + +G ID + + + + ++A+ KG
Sbjct: 75 IKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGG 134
Query: 123 LYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
+V VSG + A G ++ G+ A + P F L
Sbjct: 135 RFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVL 174
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+ IGL MG + ++ F + +NRT K + E G+ + ++ +
Sbjct: 4 VAFIGLGAMGYPMAGHLARR-FPTLVWNRTFEK--ALRHQEEFGSEAVP-------LERV 53
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
+ R + + V + + L P L +G +D + E + + R ++ L KG+ Y+
Sbjct: 54 AEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLD 113
Query: 127 CGVSGGEDGARYGP-SLMPGGNPAAWPALKPIF 158
VSGG GA G ++M GG A ++P
Sbjct: 114 APVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL 146
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IGL MG + N+ HG+ ++ Y+ F + G ++ S ++ +
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEF---QDAGEQVV--SSPADVAE-- 55
Query: 67 KKPRRVMMLVKAGSAVDDF--IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124
K R + ML + +A++ + + ++ ++KG ++ID + + +K +E G ++
Sbjct: 56 KADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVF 115
Query: 125 VGCGVSGGEDGARYGP-SLMPGG 146
+ VSGG AR G + M GG
Sbjct: 116 MDAPVSGGVGAARSGNLTFMVGG 138
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IGL MG + N+ HG+ ++ Y+ F + G ++ S ++ +
Sbjct: 25 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEF---QDAGEQVV--SSPADVAE-- 77
Query: 67 KKPRRVMMLVKAGSAVDDF--IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124
K R + ML + +A++ + + ++ ++KG ++ID + + +K +E G ++
Sbjct: 78 KADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVF 137
Query: 125 VGCGVSGGEDGARYGP-SLMPGG 146
+ VSGG AR G + M GG
Sbjct: 138 MDAPVSGGVGAARSGNLTFMVGG 160
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+ IGL G ++ F + +NRT K + E G+ + ++ +
Sbjct: 4 VAFIGLGAXGYPXAGHLARR-FPTLVWNRTFEK--ALRHQEEFGSEAVP-------LERV 53
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
+ R + + V + + L P L +G +D + E + + R ++ L KG+ Y+
Sbjct: 54 AEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLD 113
Query: 127 CGVSGGEDGARYGPSLMPGGNP 148
VSGG GA G + G P
Sbjct: 114 APVSGGTSGAEAGTLTVXLGGP 135
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 46/174 (26%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAY--------------------NRTTAKVDSFLAN 46
IG IGL MG+ + +N+ G TV A+ N+ A +
Sbjct: 7 IGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFT 66
Query: 47 EAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106
I+ E V N P V+ KAG+ +I+D +
Sbjct: 67 SLPNAGIV------ETVMN--GPGGVLSACKAGT-----------------VIVDMSSVS 101
Query: 107 YQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159
T + +K KG+ YV VSGG GA G ++M G + A + ++P+
Sbjct: 102 PSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLS 155
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK 49
IG +GL +MG ++ N+ G TV +NRT K D F+ A+
Sbjct: 33 IGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAR 75
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 95 KGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPA 153
+G I+D + +T R ++ + G Y+ VSGGE GAR G S+ GG +
Sbjct: 88 QGKTIVDXSSISPIETKRFAQRVNEXGADYLDAPVSGGEIGAREGTLSIXVGGEQKVFDR 147
Query: 154 LKPIFQKL 161
+KP+F L
Sbjct: 148 VKPLFDIL 155
>pdb|3IZ3|B Chain B, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZ3|C Chain C, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3J17|B Chain B, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
pdb|3J17|C Chain C, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 1333
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 149 AAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAA 208
A +P L+ I ++N + SA +P +K+ F EN+ Q A+++VS + +
Sbjct: 417 ANYPRLEGIIVQINTGYVASANVIRPVSEKRYFPENLEQNQSAARLVSAVKARASEADIS 476
Query: 209 EIH 211
IH
Sbjct: 477 SIH 479
>pdb|3CNF|A Chain A, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3CNF|B Chain B, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3IZX|B Chain B, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
pdb|3IZX|C Chain C, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 1333
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 149 AAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAA 208
A +P L+ I ++N + SA +P +K+ F EN+ Q A+++VS + +
Sbjct: 417 ANYPRLEGIIVQINTGYVASANVIRPVSEKRYFPENLEQNQSAARLVSAVKARASEADIS 476
Query: 209 EIH 211
IH
Sbjct: 477 SIH 479
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 66/157 (42%), Gaps = 10/157 (6%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
I +GL +G + + + G+ +V +NRT +K + +GA +E + +
Sbjct: 8 IAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTK--------LGATVVENAIDAI 59
Query: 67 KKPRRVMMLVKAGSAVDD-FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125
V ++ +AV++ F +LV L K + + + + + ++ E G YV
Sbjct: 60 TPGGIVFSVLADDAAVEELFSXELVEKLGKDGVHVSXSTISPETSRQLAQVHEWYGAHYV 119
Query: 126 GCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
G + + R ++ GN A +KPI +
Sbjct: 120 GAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENF 156
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 8 GLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK 49
G +GL +MG + N+ GF V +NR AK +A A+
Sbjct: 5 GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGAR 46
>pdb|1NRF|A Chain A, C-Terminal Domain Of The Bacillus Licheniformis Blar
Penicillin-Receptor
Length = 262
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELD--SF 409
+GE H++K +H YG+ A + + G+L +S E + + + E D
Sbjct: 123 IGEDHLRHYLKSIH----YGNEDFSVPADYWLDGSLQISPLEQVNILKKFYDNEFDFKQS 178
Query: 410 LIEITKDILKFKDTDGAPL 428
IE KD ++ ++++G L
Sbjct: 179 NIETVKDSIRLEESNGRVL 197
>pdb|2X0S|A Chain A, 3.0 A Resolution Crystal Structure Of Glycosomal Pyruvate
Phosphate Dikinase From Trypanosoma Brucei
Length = 913
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 8 GLIGLAVMGQNLIL-NMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
GL+G AV Q ++ N+ND T VA++R+ + ++F G ++ A E++V +
Sbjct: 236 GLLGTAVNVQAMVFGNINDRSATGVAFSRSPSTGENFFF----GEYLVNAQG-EDVVAGI 290
Query: 67 KKPRRV 72
+ P+++
Sbjct: 291 RTPQQI 296
>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
pdb|3OZ7|B Chain B, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
Length = 417
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 48 AKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEY 107
K + + LE K L+ P+R ++ + G+ V D I + LL+K D +I GG Y
Sbjct: 184 VKASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAY 243
>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|C Chain C, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
Length = 425
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 48 AKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEY 107
K + + LE K L+ P+R ++ + G+ V D I + LL+K D I GG Y
Sbjct: 191 VKASGFLXKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAY 250
>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|B Chain B, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|C Chain C, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
Length = 424
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 48 AKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEY 107
K + + LE K L+ P+R ++ + G+ V D I + LL+K D I GG Y
Sbjct: 190 VKASGFLXKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAY 249
>pdb|4FEY|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
With Bound Adp From Francisella Tularensis Subsp.
Tularensis Schu S4
Length = 395
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 53 IIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGG 103
I+ + ++ L K LK P++ M + GS V + L LL+K +I+I GG
Sbjct: 168 ILLTNEIQALEKALKSPKKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGG 218
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 8 GLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLK 67
G IGL +MG + N+ G +V +NR+ K + A A+ A + E+V++
Sbjct: 5 GFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAE-----RAATPXEVVESC- 58
Query: 68 KPRRVMMLVKAGSAVDDFIDK--LVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125
P ML +A + K ++ + +G +D + + R A+ AKG ++
Sbjct: 59 -PVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFL 117
Query: 126 GCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
VSG + A G ++ G+ + P F+K+
Sbjct: 118 EAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKM 154
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 184 NIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFD 243
N+++ +A+ + A G ML Q A+ G +L +M +GG + + + IK
Sbjct: 23 NLQERFHAAHL---ATGDMLRSQIAK--GTQLGLEAKKIMDQGGLVSDDIMVNMIKDELT 77
Query: 244 KNPALSN-LLLDPF 256
NPA N +LD F
Sbjct: 78 NNPACKNGFILDGF 91
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 184 NIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFD 243
N+++ +A+ + A G ML Q A+ G +L +M +GG + + + IK
Sbjct: 23 NLQERFHAAHL---ATGDMLRSQIAK--GTQLGLEAKKIMDQGGLVSDDIMVNMIKDELT 77
Query: 244 KNPALSN-LLLDPF 256
NPA N +LD F
Sbjct: 78 NNPACKNGFILDGF 91
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 46 NEAKGTNIIGAHSLEELVKNLKKPRRVM 73
N+ NIIGA++L E +NL KPR V
Sbjct: 80 NDILQANIIGAYNLYEAARNLGKPRIVF 107
>pdb|2P9Q|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2
pdb|2P9Q|B Chain B, Crystal Structure Of Phosphoglycerate Kinase-2
pdb|2P9T|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Bound To 3-
Phosphoglycerate
pdb|2PAA|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Bound To
Atp And 3pg
pdb|2PAA|B Chain B, Crystal Structure Of Phosphoglycerate Kinase-2 Bound To
Atp And 3pg
Length = 416
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 49 KGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEY 107
K + + L+ K L+KP R + + G+ V D I + +L+K + +I GG Y
Sbjct: 183 KASGFLMKKELDYFSKALEKPERPFLAILGGAKVKDKIQLIKNMLDKVNFMIIGGGMAY 241
>pdb|1NXI|A Chain A, Solution Structure Of Vibrio Cholerae Protein Vc0424
Length = 132
Score = 28.9 bits (63), Expect = 6.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQ 108
+D+ ++KLV L EK DII DG + Y+
Sbjct: 97 IDEQVEKLVNLAEKFDIIYDGWGTYYE 123
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN--EAKGTNIIGAHSLEELVK 64
+G IGL + G+ N+ G+++V +R + +A E T A + ++
Sbjct: 8 VGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 67
Query: 65 NLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124
L V + + + I+ P G ++ID + + S AL+AKG+
Sbjct: 68 XLPNSPHVKEVALGENGI---IEGAKP----GTVLIDXSSIAPLASREISDALKAKGVEX 120
Query: 125 VGCGVSGGEDGARYGP-SLMPGGNPAAW 151
+ VSGGE A G S+ GG+ A +
Sbjct: 121 LDAPVSGGEPKAIDGTLSVXVGGDKAIF 148
>pdb|1OY5|A Chain A, Crystal Structure Of Trna (M1g37) Methyltransferase From
Aquifex Aeolicus
pdb|1OY5|B Chain B, Crystal Structure Of Trna (M1g37) Methyltransferase From
Aquifex Aeolicus
pdb|1OY5|C Chain C, Crystal Structure Of Trna (M1g37) Methyltransferase From
Aquifex Aeolicus
Length = 257
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 60 EELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPL-LEKGDIIIDGGN 104
++LV L K R+M++ VD+ + K+V + + GD I+ GG
Sbjct: 98 QKLVNELSKKERIMIICGRYEGVDERVKKIVDMEISLGDFILSGGE 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,854,922
Number of Sequences: 62578
Number of extensions: 704409
Number of successful extensions: 1935
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1841
Number of HSP's gapped (non-prelim): 83
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)