Query psy9637
Match_columns 490
No_of_seqs 489 out of 3585
Neff 7.6
Searched_HMMs 46136
Date Sat Aug 17 00:47:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0362 Gnd 6-phosphogluconate 100.0 4E-92 8.7E-97 694.4 28.0 305 4-486 3-308 (473)
2 KOG2653|consensus 100.0 7.9E-86 1.7E-90 639.3 24.7 307 4-487 6-312 (487)
3 COG1023 Gnd Predicted 6-phosph 100.0 1E-79 2.3E-84 570.3 25.7 283 5-482 1-284 (300)
4 PTZ00142 6-phosphogluconate de 100.0 2.1E-73 4.5E-78 599.8 29.5 304 5-486 2-307 (470)
5 TIGR00873 gnd 6-phosphoglucona 100.0 6.4E-71 1.4E-75 581.0 31.0 303 6-486 1-303 (467)
6 PRK09287 6-phosphogluconate de 100.0 1.7E-70 3.7E-75 575.4 28.2 294 15-486 1-296 (459)
7 PLN02350 phosphogluconate dehy 100.0 2.1E-66 4.6E-71 546.9 30.6 305 3-485 5-312 (493)
8 TIGR00872 gnd_rel 6-phosphoglu 100.0 3E-51 6.5E-56 411.8 31.8 294 5-320 1-298 (298)
9 COG2084 MmsB 3-hydroxyisobutyr 100.0 4.3E-51 9.2E-56 400.8 29.9 280 5-312 1-285 (286)
10 PRK09599 6-phosphogluconate de 100.0 5.9E-50 1.3E-54 403.2 31.6 295 5-320 1-300 (301)
11 PRK12490 6-phosphogluconate de 100.0 2.4E-48 5.1E-53 391.1 31.6 291 5-319 1-298 (299)
12 KOG0409|consensus 100.0 5.8E-48 1.3E-52 371.3 27.2 281 4-312 35-320 (327)
13 PLN02858 fructose-bisphosphate 100.0 7.7E-45 1.7E-49 423.1 38.6 284 1-312 1-291 (1378)
14 PF00393 6PGD: 6-phosphoglucon 100.0 1E-46 2.2E-51 368.2 12.5 129 358-486 1-129 (291)
15 PRK15059 tartronate semialdehy 100.0 5.5E-44 1.2E-48 357.7 29.2 281 5-314 1-285 (292)
16 PRK15461 NADH-dependent gamma- 100.0 1.8E-42 4E-47 347.8 29.8 282 5-313 2-287 (296)
17 TIGR01692 HIBADH 3-hydroxyisob 100.0 5.6E-41 1.2E-45 335.9 28.2 282 9-312 1-287 (288)
18 TIGR01505 tartro_sem_red 2-hyd 100.0 1.1E-38 2.4E-43 319.8 30.1 281 6-314 1-285 (291)
19 PRK11559 garR tartronate semia 100.0 9.8E-39 2.1E-43 320.9 29.7 282 4-313 2-287 (296)
20 PLN02858 fructose-bisphosphate 100.0 7E-38 1.5E-42 365.0 30.6 281 5-313 325-612 (1378)
21 COG0362 Gnd 6-phosphogluconate 100.0 2.3E-34 4.9E-39 285.1 18.0 159 175-334 312-470 (473)
22 PF00393 6PGD: 6-phosphoglucon 100.0 1.1E-32 2.5E-37 269.5 15.2 156 176-332 136-291 (291)
23 KOG2653|consensus 100.0 2.7E-32 5.9E-37 266.0 17.3 167 177-343 319-485 (487)
24 PF03446 NAD_binding_2: NAD bi 100.0 5E-33 1.1E-37 255.5 9.8 159 4-170 1-163 (163)
25 PRK09287 6-phosphogluconate de 100.0 1.9E-31 4.2E-36 280.4 17.9 184 149-333 272-457 (459)
26 TIGR03026 NDP-sugDHase nucleot 100.0 3.2E-30 6.8E-35 270.6 23.1 271 5-312 1-308 (411)
27 TIGR00873 gnd 6-phosphoglucona 100.0 7.3E-31 1.6E-35 277.1 18.3 185 149-333 279-467 (467)
28 PTZ00142 6-phosphogluconate de 100.0 4E-30 8.6E-35 271.5 18.4 155 177-332 316-470 (470)
29 PLN02350 phosphogluconate dehy 100.0 1E-28 2.2E-33 261.1 16.9 158 177-335 325-482 (493)
30 PRK11064 wecC UDP-N-acetyl-D-m 99.9 3.9E-26 8.4E-31 239.3 22.4 268 1-312 1-307 (415)
31 PRK15182 Vi polysaccharide bio 99.9 1E-25 2.2E-30 236.3 23.6 269 3-314 5-307 (425)
32 PRK15057 UDP-glucose 6-dehydro 99.9 5.7E-25 1.2E-29 228.0 22.7 259 5-311 1-294 (388)
33 PRK14618 NAD(P)H-dependent gly 99.9 6.6E-25 1.4E-29 223.8 11.1 272 1-293 1-308 (328)
34 PRK00094 gpsA NAD(P)H-dependen 99.9 5E-24 1.1E-28 216.6 14.5 275 4-293 1-310 (325)
35 PRK14619 NAD(P)H-dependent gly 99.9 1.5E-22 3.2E-27 204.7 17.0 243 3-293 3-286 (308)
36 COG1004 Ugd Predicted UDP-gluc 99.9 1E-20 2.2E-25 190.3 24.0 270 5-313 1-307 (414)
37 PRK06129 3-hydroxyacyl-CoA deh 99.9 1.7E-20 3.7E-25 189.7 22.3 270 4-310 2-297 (308)
38 PLN02353 probable UDP-glucose 99.9 6.4E-20 1.4E-24 194.2 25.8 272 4-313 1-319 (473)
39 TIGR00872 gnd_rel 6-phosphoglu 99.9 1.1E-21 2.4E-26 197.4 10.1 116 349-472 158-275 (298)
40 COG0677 WecC UDP-N-acetyl-D-ma 99.8 5.7E-20 1.2E-24 184.0 17.3 266 5-310 10-311 (436)
41 PRK12557 H(2)-dependent methyl 99.8 3.6E-19 7.8E-24 181.5 21.8 201 5-225 1-237 (342)
42 PRK08229 2-dehydropantoate 2-r 99.8 3E-19 6.5E-24 183.0 20.6 265 4-301 2-322 (341)
43 PLN02688 pyrroline-5-carboxyla 99.8 1.2E-18 2.6E-23 172.5 21.4 255 5-298 1-263 (266)
44 PRK07531 bifunctional 3-hydrox 99.8 6.3E-18 1.4E-22 181.3 21.2 201 1-229 1-222 (495)
45 PRK07679 pyrroline-5-carboxyla 99.8 1.6E-17 3.4E-22 165.8 19.7 243 1-297 1-267 (279)
46 PRK08507 prephenate dehydrogen 99.8 6.7E-17 1.5E-21 160.9 22.8 192 5-225 1-207 (275)
47 PRK11199 tyrA bifunctional cho 99.7 2.6E-16 5.5E-21 163.1 23.6 178 4-222 98-279 (374)
48 PRK07417 arogenate dehydrogena 99.7 1.9E-16 4.1E-21 158.0 20.6 174 5-195 1-187 (279)
49 PRK09260 3-hydroxybutyryl-CoA 99.7 1.1E-16 2.3E-21 160.5 17.1 192 5-226 2-219 (288)
50 PRK08268 3-hydroxy-acyl-CoA de 99.7 1.4E-16 3.1E-21 170.9 18.3 190 4-227 7-225 (507)
51 PRK08655 prephenate dehydrogen 99.7 1.1E-15 2.4E-20 161.4 24.0 245 5-276 1-253 (437)
52 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.7 5.6E-16 1.2E-20 165.9 17.9 192 3-228 4-224 (503)
53 PRK06130 3-hydroxybutyryl-CoA 99.7 2.6E-15 5.5E-20 152.1 19.7 198 1-227 1-219 (311)
54 PRK07819 3-hydroxybutyryl-CoA 99.7 5.9E-15 1.3E-19 147.6 19.6 195 3-226 4-224 (286)
55 PRK07530 3-hydroxybutyryl-CoA 99.7 6.9E-15 1.5E-19 147.7 19.8 193 1-225 1-220 (292)
56 COG0240 GpsA Glycerol-3-phosph 99.6 4.3E-15 9.3E-20 148.0 16.9 273 4-294 1-310 (329)
57 PLN02545 3-hydroxybutyryl-CoA 99.6 9.6E-15 2.1E-19 146.9 19.2 195 1-225 1-220 (295)
58 COG1023 Gnd Predicted 6-phosph 99.6 1.2E-14 2.7E-19 136.4 14.7 218 59-320 77-299 (300)
59 PRK11880 pyrroline-5-carboxyla 99.6 1.5E-13 3.2E-18 136.2 21.6 251 4-297 2-263 (267)
60 PRK07680 late competence prote 99.6 1E-13 2.2E-18 137.9 20.5 149 5-166 1-156 (273)
61 TIGR01724 hmd_rel H2-forming N 99.6 1.3E-12 2.7E-17 129.4 27.3 152 5-167 1-191 (341)
62 PRK12921 2-dehydropantoate 2-r 99.6 1E-13 2.2E-18 139.8 19.5 259 5-296 1-301 (305)
63 PRK06476 pyrroline-5-carboxyla 99.6 2.5E-13 5.4E-18 134.0 21.7 186 5-225 1-194 (258)
64 PRK09599 6-phosphogluconate de 99.6 5.6E-15 1.2E-19 149.0 9.9 116 349-472 160-277 (301)
65 PRK07502 cyclohexadienyl dehyd 99.6 3.5E-14 7.6E-19 143.6 15.1 159 4-170 6-179 (307)
66 PRK12439 NAD(P)H-dependent gly 99.6 6.5E-14 1.4E-18 143.7 17.2 267 4-293 7-315 (341)
67 PRK06522 2-dehydropantoate 2-r 99.6 3.5E-13 7.6E-18 135.6 21.5 259 5-296 1-298 (304)
68 PF14833 NAD_binding_11: NAD-b 99.6 2.3E-14 5.1E-19 125.1 10.5 121 178-312 2-122 (122)
69 PRK14620 NAD(P)H-dependent gly 99.5 2.4E-13 5.3E-18 138.6 19.4 268 5-293 1-312 (326)
70 PRK06545 prephenate dehydrogen 99.5 3.4E-13 7.4E-18 139.3 20.5 160 5-170 1-174 (359)
71 COG0287 TyrA Prephenate dehydr 99.5 1.8E-12 4E-17 128.5 23.1 160 4-171 3-172 (279)
72 PRK06035 3-hydroxyacyl-CoA deh 99.5 1.7E-13 3.7E-18 137.6 15.2 190 4-225 3-222 (291)
73 PRK12490 6-phosphogluconate de 99.5 4.4E-14 9.5E-19 142.4 10.3 119 348-473 158-277 (299)
74 PRK05808 3-hydroxybutyryl-CoA 99.5 5.4E-13 1.2E-17 133.3 17.7 195 1-227 1-221 (282)
75 PF03721 UDPG_MGDP_dh_N: UDP-g 99.5 9.9E-14 2.2E-18 129.9 10.6 113 5-120 1-138 (185)
76 PRK06249 2-dehydropantoate 2-r 99.5 1.8E-12 3.9E-17 131.5 20.1 260 3-297 4-310 (313)
77 PTZ00345 glycerol-3-phosphate 99.5 3E-12 6.4E-17 131.7 20.3 267 4-293 11-341 (365)
78 PRK07066 3-hydroxybutyryl-CoA 99.5 2.7E-12 5.8E-17 129.9 19.3 195 4-228 7-224 (321)
79 TIGR03376 glycerol3P_DH glycer 99.5 2.5E-12 5.4E-17 131.3 18.8 263 6-293 1-330 (342)
80 PRK12491 pyrroline-5-carboxyla 99.5 9.5E-12 2.1E-16 123.6 22.3 201 5-235 3-215 (272)
81 PLN02256 arogenate dehydrogena 99.5 9.2E-12 2E-16 125.5 22.5 158 4-171 36-205 (304)
82 PLN02712 arogenate dehydrogena 99.5 9.6E-13 2.1E-17 145.3 16.0 156 4-170 369-537 (667)
83 PRK08269 3-hydroxybutyryl-CoA 99.4 1.7E-12 3.7E-17 131.5 15.6 179 15-228 1-219 (314)
84 PRK08293 3-hydroxybutyryl-CoA 99.4 6.8E-12 1.5E-16 125.7 19.2 192 4-227 3-224 (287)
85 PRK05708 2-dehydropantoate 2-r 99.4 6.9E-12 1.5E-16 126.8 19.0 266 4-302 2-304 (305)
86 TIGR01915 npdG NADPH-dependent 99.4 4.1E-12 9E-17 122.3 12.4 160 5-171 1-190 (219)
87 COG1893 ApbA Ketopantoate redu 99.4 6.4E-11 1.4E-15 119.5 20.9 260 5-298 1-302 (307)
88 PRK08818 prephenate dehydrogen 99.4 2E-11 4.4E-16 125.5 17.1 147 1-171 1-156 (370)
89 PF03807 F420_oxidored: NADP o 99.4 3.7E-12 8E-17 106.1 9.3 90 6-104 1-95 (96)
90 PLN02712 arogenate dehydrogena 99.4 7.6E-11 1.7E-15 130.3 22.3 157 4-170 52-220 (667)
91 PRK14806 bifunctional cyclohex 99.3 6.3E-11 1.4E-15 133.6 18.3 159 5-170 4-177 (735)
92 PF01210 NAD_Gly3P_dh_N: NAD-d 99.3 2.6E-12 5.6E-17 117.3 5.7 97 6-106 1-106 (157)
93 PRK07634 pyrroline-5-carboxyla 99.3 1.3E-10 2.8E-15 113.6 17.6 153 1-167 1-162 (245)
94 PTZ00431 pyrroline carboxylate 99.3 3.1E-10 6.7E-15 112.1 19.2 199 1-236 1-209 (260)
95 PF10727 Rossmann-like: Rossma 99.3 6E-12 1.3E-16 110.2 5.9 109 4-123 10-121 (127)
96 COG2085 Predicted dinucleotide 99.3 7.6E-11 1.6E-15 110.5 12.9 159 4-171 1-181 (211)
97 COG0345 ProC Pyrroline-5-carbo 99.3 1.6E-09 3.4E-14 106.3 22.7 204 4-237 1-214 (266)
98 PRK05479 ketol-acid reductoiso 99.2 2.2E-10 4.8E-15 115.8 16.5 188 5-218 18-222 (330)
99 PRK06928 pyrroline-5-carboxyla 99.2 5.2E-10 1.1E-14 111.6 18.8 150 5-167 2-160 (277)
100 cd01075 NAD_bind_Leu_Phe_Val_D 99.2 2.9E-10 6.4E-15 107.8 16.2 138 5-159 29-170 (200)
101 PF02737 3HCDH_N: 3-hydroxyacy 99.2 7.9E-11 1.7E-15 109.9 8.9 150 6-167 1-176 (180)
102 KOG2666|consensus 99.1 3.4E-09 7.3E-14 103.6 18.0 254 4-295 1-299 (481)
103 PRK07574 formate dehydrogenase 99.1 1E-09 2.2E-14 113.6 14.7 111 5-123 193-304 (385)
104 PRK12480 D-lactate dehydrogena 99.1 6.3E-10 1.4E-14 113.5 12.7 109 5-125 147-256 (330)
105 PLN03139 formate dehydrogenase 99.1 1.6E-09 3.6E-14 112.1 14.9 111 5-123 200-311 (386)
106 COG1250 FadB 3-hydroxyacyl-CoA 99.1 4.8E-09 1E-13 104.9 16.4 193 4-227 3-221 (307)
107 PRK13243 glyoxylate reductase; 99.0 1E-09 2.3E-14 112.1 11.4 109 5-123 151-260 (333)
108 TIGR00745 apbA_panE 2-dehydrop 99.0 1E-08 2.3E-13 102.5 17.6 248 15-296 2-291 (293)
109 cd01065 NAD_bind_Shikimate_DH 99.0 9.3E-10 2E-14 99.6 8.7 118 4-127 19-138 (155)
110 PF02153 PDH: Prephenate dehyd 99.0 2.2E-08 4.9E-13 98.8 19.1 143 19-170 1-158 (258)
111 PRK11730 fadB multifunctional 99.0 7.5E-09 1.6E-13 115.9 17.6 191 4-226 313-529 (715)
112 TIGR00465 ilvC ketol-acid redu 99.0 1E-08 2.2E-13 103.8 16.6 147 5-164 4-161 (314)
113 TIGR02437 FadB fatty oxidation 99.0 2.3E-08 5E-13 111.9 20.7 191 4-226 313-529 (714)
114 PRK13403 ketol-acid reductoiso 99.0 2.4E-09 5.1E-14 107.1 10.5 88 5-102 17-105 (335)
115 PRK06436 glycerate dehydrogena 99.0 2.4E-09 5.1E-14 107.9 10.6 106 5-123 123-229 (303)
116 PF02826 2-Hacid_dh_C: D-isome 99.0 2E-09 4.4E-14 100.2 9.5 110 5-123 37-147 (178)
117 PRK15469 ghrA bifunctional gly 99.0 2.3E-09 4.9E-14 108.5 9.9 110 5-124 137-247 (312)
118 PRK11154 fadJ multifunctional 99.0 2.1E-08 4.5E-13 112.3 18.0 190 4-225 309-525 (708)
119 PRK08605 D-lactate dehydrogena 98.9 4.9E-09 1.1E-13 107.2 11.5 108 5-123 147-256 (332)
120 TIGR02440 FadJ fatty oxidation 98.9 3.4E-08 7.4E-13 110.4 19.2 190 4-225 304-520 (699)
121 TIGR02441 fa_ox_alpha_mit fatt 98.9 1.4E-08 3.1E-13 113.8 16.0 189 4-224 335-549 (737)
122 KOG2380|consensus 98.9 2.1E-08 4.5E-13 99.0 13.2 156 4-169 52-219 (480)
123 PF07991 IlvN: Acetohydroxy ac 98.8 1.1E-08 2.4E-13 92.2 8.9 89 4-102 4-94 (165)
124 PLN02928 oxidoreductase family 98.8 3.2E-08 6.9E-13 101.7 13.1 116 5-123 160-282 (347)
125 PRK13302 putative L-aspartate 98.8 3.4E-08 7.3E-13 98.2 12.0 110 5-124 7-119 (271)
126 TIGR01327 PGDH D-3-phosphoglyc 98.8 1.6E-08 3.5E-13 109.5 10.4 111 5-124 139-250 (525)
127 PRK13581 D-3-phosphoglycerate 98.8 2.2E-08 4.7E-13 108.5 10.3 109 5-123 141-250 (526)
128 PRK00257 erythronate-4-phospha 98.7 3.1E-08 6.7E-13 102.6 9.3 106 5-123 117-227 (381)
129 COG0111 SerA Phosphoglycerate 98.7 6.1E-08 1.3E-12 98.4 10.3 114 5-127 143-259 (324)
130 COG1052 LdhA Lactate dehydroge 98.7 1.2E-07 2.7E-12 96.2 11.3 109 5-123 147-256 (324)
131 PRK08410 2-hydroxyacid dehydro 98.7 1.4E-07 3.1E-12 95.6 11.6 106 5-123 146-252 (311)
132 PRK15409 bifunctional glyoxyla 98.7 2.7E-07 5.8E-12 94.0 13.1 109 5-123 146-256 (323)
133 PRK14194 bifunctional 5,10-met 98.6 8.2E-08 1.8E-12 95.7 8.4 74 5-106 160-234 (301)
134 PRK11790 D-3-phosphoglycerate 98.6 1.1E-07 2.3E-12 100.0 9.6 108 5-124 152-260 (409)
135 TIGR02853 spore_dpaA dipicolin 98.6 1.5E-07 3.3E-12 94.2 10.2 111 5-128 152-262 (287)
136 PRK06487 glycerate dehydrogena 98.6 3.1E-07 6.8E-12 93.3 12.3 104 5-123 149-253 (317)
137 PRK15438 erythronate-4-phospha 98.6 1.3E-07 2.9E-12 97.7 9.4 105 5-122 117-226 (378)
138 PRK06932 glycerate dehydrogena 98.6 2.3E-07 5E-12 94.1 11.0 105 5-123 148-253 (314)
139 PRK13304 L-aspartate dehydroge 98.6 5.6E-07 1.2E-11 89.2 11.8 109 4-123 1-115 (265)
140 PRK06141 ornithine cyclodeamin 98.6 1.6E-07 3.5E-12 95.3 8.1 114 5-127 126-242 (314)
141 PLN02306 hydroxypyruvate reduc 98.5 6.5E-07 1.4E-11 93.1 11.4 116 5-123 166-292 (386)
142 COG2084 MmsB 3-hydroxyisobutyr 98.5 5.5E-07 1.2E-11 89.3 9.1 107 349-466 158-265 (286)
143 PRK06444 prephenate dehydrogen 98.5 1.1E-05 2.3E-10 76.3 17.3 114 5-170 1-121 (197)
144 PF14833 NAD_binding_11: NAD-b 98.5 8.3E-07 1.8E-11 77.4 9.0 99 356-465 1-101 (122)
145 COG4007 Predicted dehydrogenas 98.5 6E-06 1.3E-10 79.1 15.3 187 4-207 1-226 (340)
146 KOG0069|consensus 98.4 1.3E-06 2.8E-11 88.1 11.1 107 5-120 163-270 (336)
147 PRK15059 tartronate semialdehy 98.4 7.2E-07 1.6E-11 89.7 9.1 105 349-463 156-260 (292)
148 PF02558 ApbA: Ketopantoate re 98.4 1.4E-06 3E-11 78.5 9.5 96 7-107 1-105 (151)
149 PRK14188 bifunctional 5,10-met 98.4 7E-07 1.5E-11 89.3 8.1 73 5-106 159-233 (296)
150 PRK08306 dipicolinate synthase 98.4 1.6E-06 3.5E-11 87.3 10.3 109 5-126 153-261 (296)
151 KOG2304|consensus 98.4 1.8E-06 3.8E-11 81.3 9.6 198 1-227 8-235 (298)
152 TIGR00507 aroE shikimate 5-deh 98.4 1.1E-06 2.4E-11 87.4 8.5 117 5-127 118-236 (270)
153 cd05213 NAD_bind_Glutamyl_tRNA 98.3 3.3E-06 7.1E-11 85.7 10.6 95 4-104 178-274 (311)
154 TIGR00112 proC pyrroline-5-car 98.3 3.8E-05 8.1E-10 75.3 17.7 128 27-167 9-140 (245)
155 COG1748 LYS9 Saccharopine dehy 98.3 6.6E-06 1.4E-10 84.9 12.4 127 4-135 1-131 (389)
156 PF01408 GFO_IDH_MocA: Oxidore 98.3 1.2E-05 2.6E-10 69.3 12.0 110 5-123 1-115 (120)
157 TIGR01692 HIBADH 3-hydroxyisob 98.3 2.3E-06 5.1E-11 85.8 8.3 105 349-463 153-264 (288)
158 PRK14179 bifunctional 5,10-met 98.2 2.6E-06 5.6E-11 84.5 7.8 74 5-106 159-233 (284)
159 COG0059 IlvC Ketol-acid reduct 98.2 3.9E-06 8.5E-11 82.4 8.5 85 5-99 19-105 (338)
160 PF00984 UDPG_MGDP_dh: UDP-glu 98.2 7.5E-06 1.6E-10 68.3 8.5 91 178-292 3-93 (96)
161 PF01488 Shikimate_DH: Shikima 98.2 3.1E-06 6.7E-11 75.2 6.2 95 5-104 13-110 (135)
162 TIGR02371 ala_DH_arch alanine 98.1 7E-06 1.5E-10 83.8 8.5 95 5-107 129-226 (325)
163 smart00859 Semialdhyde_dh Semi 98.1 6.9E-06 1.5E-10 71.4 7.3 98 6-106 1-102 (122)
164 PRK11559 garR tartronate semia 98.1 1E-05 2.2E-10 81.3 9.0 105 349-463 159-263 (296)
165 PRK06223 malate dehydrogenase; 98.1 1.5E-05 3.2E-10 80.7 9.8 97 4-105 2-121 (307)
166 PRK05225 ketol-acid reductoiso 98.1 8E-06 1.7E-10 85.1 7.2 86 5-100 37-128 (487)
167 TIGR01505 tartro_sem_red 2-hyd 98.0 1.9E-05 4E-10 79.3 8.9 105 349-463 156-260 (291)
168 PLN00203 glutamyl-tRNA reducta 98.0 2.4E-05 5.2E-10 84.4 10.0 98 4-104 266-370 (519)
169 PTZ00075 Adenosylhomocysteinas 98.0 3.8E-05 8.3E-10 81.2 11.2 89 5-106 255-344 (476)
170 PRK15461 NADH-dependent gamma- 98.0 2E-05 4.2E-10 79.5 8.5 104 349-463 158-263 (296)
171 KOG2305|consensus 98.0 0.00022 4.7E-09 67.5 14.6 198 1-228 1-225 (313)
172 TIGR01763 MalateDH_bact malate 98.0 2.4E-05 5.3E-10 79.1 9.1 96 5-105 2-120 (305)
173 PRK09310 aroDE bifunctional 3- 98.0 3.9E-05 8.4E-10 82.3 11.0 104 5-125 333-436 (477)
174 COG0569 TrkA K+ transport syst 97.9 7E-05 1.5E-09 72.4 11.1 98 5-105 1-103 (225)
175 TIGR01921 DAP-DH diaminopimela 97.9 6.6E-05 1.4E-09 75.9 11.2 89 1-104 1-92 (324)
176 PF00670 AdoHcyase_NAD: S-aden 97.9 5E-05 1.1E-09 69.1 8.6 91 5-107 24-114 (162)
177 TIGR00936 ahcY adenosylhomocys 97.9 0.00012 2.5E-09 76.6 11.8 99 5-116 196-296 (406)
178 PRK06407 ornithine cyclodeamin 97.9 5.8E-05 1.3E-09 76.2 9.3 114 5-127 118-236 (301)
179 PLN02819 lysine-ketoglutarate 97.9 0.00015 3.2E-09 83.6 13.4 120 4-128 569-704 (1042)
180 PRK07340 ornithine cyclodeamin 97.8 8.3E-05 1.8E-09 75.2 10.0 93 5-107 126-221 (304)
181 COG1712 Predicted dinucleotide 97.8 0.00016 3.4E-09 68.5 10.9 110 5-123 1-113 (255)
182 TIGR01035 hemA glutamyl-tRNA r 97.8 9E-05 1.9E-09 78.3 10.3 95 5-104 181-278 (417)
183 PRK05476 S-adenosyl-L-homocyst 97.8 0.0001 2.3E-09 77.4 10.4 90 5-107 213-303 (425)
184 PRK08618 ornithine cyclodeamin 97.8 8.3E-05 1.8E-09 75.9 9.5 95 5-108 128-226 (325)
185 cd05292 LDH_2 A subgroup of L- 97.8 0.0002 4.3E-09 72.7 12.0 94 5-104 1-117 (308)
186 PF01113 DapB_N: Dihydrodipico 97.8 7.2E-05 1.6E-09 65.5 7.7 107 5-120 1-115 (124)
187 TIGR00518 alaDH alanine dehydr 97.8 6.9E-05 1.5E-09 77.9 8.9 98 5-104 168-268 (370)
188 cd01483 E1_enzyme_family Super 97.8 0.00012 2.6E-09 65.5 9.1 120 6-131 1-124 (143)
189 KOG2711|consensus 97.8 0.00018 3.9E-09 72.0 10.9 98 5-106 22-142 (372)
190 PRK00045 hemA glutamyl-tRNA re 97.8 7.5E-05 1.6E-09 79.0 8.9 95 5-104 183-281 (423)
191 PRK06823 ornithine cyclodeamin 97.8 9.9E-05 2.1E-09 75.0 9.2 114 5-127 129-246 (315)
192 TIGR02992 ectoine_eutC ectoine 97.8 8.6E-05 1.9E-09 75.9 8.7 94 5-106 130-227 (326)
193 PRK11579 putative oxidoreducta 97.8 0.00026 5.7E-09 72.9 12.2 112 1-124 1-118 (346)
194 TIGR01809 Shik-DH-AROM shikima 97.8 0.00015 3.3E-09 72.5 10.2 117 5-123 126-249 (282)
195 PRK13301 putative L-aspartate 97.7 0.00024 5.3E-09 69.6 10.8 88 5-104 3-94 (267)
196 COG0673 MviM Predicted dehydro 97.7 0.00037 8E-09 71.2 12.8 112 3-123 2-120 (342)
197 PLN02494 adenosylhomocysteinas 97.7 0.00018 4E-09 75.9 10.6 88 5-105 255-343 (477)
198 PRK00258 aroE shikimate 5-dehy 97.7 7.9E-05 1.7E-09 74.4 7.5 116 5-125 124-241 (278)
199 PRK13303 L-aspartate dehydroge 97.7 0.00022 4.7E-09 70.8 10.5 108 4-123 1-115 (265)
200 PRK08291 ectoine utilization p 97.7 0.00017 3.6E-09 73.9 10.0 94 5-106 133-230 (330)
201 cd05297 GH4_alpha_glucosidase_ 97.7 9.9E-05 2.1E-09 78.1 8.5 71 5-78 1-84 (423)
202 PTZ00082 L-lactate dehydrogena 97.7 0.00026 5.7E-09 72.1 10.8 99 3-106 5-131 (321)
203 PRK12549 shikimate 5-dehydroge 97.7 8.7E-05 1.9E-09 74.3 7.2 115 5-125 128-247 (284)
204 PRK00048 dihydrodipicolinate r 97.7 0.00022 4.9E-09 70.3 9.8 94 4-109 1-97 (257)
205 COG0373 HemA Glutamyl-tRNA red 97.7 0.00025 5.4E-09 73.9 10.1 94 5-104 179-275 (414)
206 cd01078 NAD_bind_H4MPT_DH NADP 97.6 0.0003 6.6E-09 66.2 9.7 99 5-106 29-132 (194)
207 KOG0068|consensus 97.6 0.00024 5.3E-09 70.9 9.2 105 5-119 147-252 (406)
208 cd00401 AdoHcyase S-adenosyl-L 97.6 0.00026 5.6E-09 74.3 9.9 88 5-105 203-291 (413)
209 PF03435 Saccharop_dh: Sacchar 97.6 0.0005 1.1E-08 71.8 12.0 122 7-134 1-129 (386)
210 cd01339 LDH-like_MDH L-lactate 97.6 0.00024 5.2E-09 71.7 9.2 94 7-105 1-117 (300)
211 PF02423 OCD_Mu_crystall: Orni 97.6 0.0002 4.3E-09 72.8 8.2 97 5-107 129-228 (313)
212 COG2423 Predicted ornithine cy 97.6 0.00029 6.2E-09 71.7 9.2 115 5-128 131-250 (330)
213 cd05291 HicDH_like L-2-hydroxy 97.5 0.00042 9.1E-09 70.2 9.8 95 5-104 1-118 (306)
214 PRK06046 alanine dehydrogenase 97.5 0.00028 6.1E-09 72.1 8.6 94 5-107 130-227 (326)
215 TIGR01761 thiaz-red thiazoliny 97.5 0.00096 2.1E-08 68.5 11.9 112 3-125 2-119 (343)
216 cd01080 NAD_bind_m-THF_DH_Cycl 97.5 0.00042 9.2E-09 63.9 7.9 73 5-105 45-118 (168)
217 PF00056 Ldh_1_N: lactate/mala 97.4 0.00051 1.1E-08 61.5 7.9 95 5-104 1-119 (141)
218 TIGR00036 dapB dihydrodipicoli 97.4 0.0012 2.7E-08 65.4 11.4 112 5-123 2-120 (266)
219 PTZ00117 malate dehydrogenase; 97.4 0.00086 1.9E-08 68.4 10.5 97 4-105 5-124 (319)
220 PRK07589 ornithine cyclodeamin 97.4 0.00046 1E-08 70.9 8.2 116 5-127 130-248 (346)
221 PRK13940 glutamyl-tRNA reducta 97.4 0.00044 9.5E-09 72.8 8.3 92 5-104 182-274 (414)
222 PRK08300 acetaldehyde dehydrog 97.4 0.0015 3.3E-08 65.5 11.3 98 1-106 1-104 (302)
223 PRK04148 hypothetical protein; 97.4 0.0011 2.5E-08 58.4 9.1 98 5-107 18-115 (134)
224 KOG0409|consensus 97.4 0.00057 1.2E-08 67.5 7.9 107 349-466 193-300 (327)
225 PRK03659 glutathione-regulated 97.4 0.0016 3.6E-08 72.0 12.3 112 5-124 401-514 (601)
226 cd05293 LDH_1 A subgroup of L- 97.3 0.0012 2.5E-08 67.1 9.9 96 4-104 3-121 (312)
227 PRK10669 putative cation:proto 97.3 0.0019 4.2E-08 70.8 12.4 115 5-128 418-535 (558)
228 PRK09496 trkA potassium transp 97.3 0.0016 3.5E-08 69.3 11.3 97 5-104 1-101 (453)
229 PF01118 Semialdhyde_dh: Semia 97.3 0.00045 9.6E-09 60.0 5.7 93 6-106 1-100 (121)
230 KOG2741|consensus 97.3 0.0031 6.6E-08 63.6 12.2 118 4-127 6-129 (351)
231 cd05191 NAD_bind_amino_acid_DH 97.3 0.0012 2.5E-08 53.8 7.7 63 4-103 23-86 (86)
232 PRK06199 ornithine cyclodeamin 97.3 0.00096 2.1E-08 69.5 9.0 95 5-104 156-260 (379)
233 COG5495 Uncharacterized conser 97.3 0.004 8.8E-08 59.2 12.0 188 5-218 11-206 (289)
234 PF01262 AlaDh_PNT_C: Alanine 97.3 0.00024 5.2E-09 65.5 3.8 100 5-104 21-140 (168)
235 PF02254 TrkA_N: TrkA-N domain 97.3 0.0018 3.8E-08 55.4 9.0 95 7-103 1-97 (116)
236 COG0686 Ald Alanine dehydrogen 97.2 0.0011 2.3E-08 65.9 7.7 97 5-103 169-268 (371)
237 PRK06349 homoserine dehydrogen 97.2 0.0014 3E-08 69.5 9.1 124 1-134 1-137 (426)
238 cd01076 NAD_bind_1_Glu_DH NAD( 97.2 0.0027 5.8E-08 61.5 10.3 114 5-127 32-158 (227)
239 PRK03562 glutathione-regulated 97.2 0.0023 5E-08 71.1 11.0 112 5-125 401-515 (621)
240 PRK00066 ldh L-lactate dehydro 97.2 0.0024 5.1E-08 65.0 10.1 101 4-111 6-128 (315)
241 PRK00436 argC N-acetyl-gamma-g 97.1 0.0013 2.8E-08 67.7 8.1 97 4-107 2-103 (343)
242 cd00650 LDH_MDH_like NAD-depen 97.1 0.0014 2.9E-08 65.0 7.9 95 7-105 1-121 (263)
243 PRK15076 alpha-galactosidase; 97.1 0.0018 3.8E-08 68.7 9.1 72 5-79 2-86 (431)
244 PF10100 DUF2338: Uncharacteri 97.1 0.092 2E-06 54.2 20.9 197 5-226 2-282 (429)
245 PRK09496 trkA potassium transp 97.1 0.0039 8.4E-08 66.4 11.8 100 4-105 231-333 (453)
246 TIGR03215 ac_ald_DH_ac acetald 97.1 0.0023 5.1E-08 63.9 9.3 93 5-106 2-98 (285)
247 cd00300 LDH_like L-lactate deh 97.1 0.0024 5.1E-08 64.6 9.5 98 7-111 1-121 (300)
248 TIGR00561 pntA NAD(P) transhyd 97.1 0.0017 3.7E-08 69.7 8.9 97 5-104 165-285 (511)
249 TIGR01850 argC N-acetyl-gamma- 97.1 0.0017 3.7E-08 66.9 8.4 95 5-106 1-102 (346)
250 PRK02318 mannitol-1-phosphate 97.1 0.0021 4.6E-08 67.1 9.2 102 5-107 1-126 (381)
251 PRK04207 glyceraldehyde-3-phos 97.1 0.0037 8E-08 64.3 10.8 95 4-105 1-111 (341)
252 PRK14175 bifunctional 5,10-met 97.1 0.0022 4.7E-08 64.0 8.5 73 5-105 159-232 (286)
253 PRK06270 homoserine dehydrogen 97.1 0.004 8.7E-08 64.1 10.7 128 5-133 3-157 (341)
254 PF13380 CoA_binding_2: CoA bi 97.0 0.0014 3E-08 56.7 6.0 103 5-126 1-107 (116)
255 PRK14189 bifunctional 5,10-met 97.0 0.0021 4.6E-08 64.0 7.8 74 5-106 159-233 (285)
256 cd05211 NAD_bind_Glu_Leu_Phe_V 97.0 0.0063 1.4E-07 58.5 10.5 113 5-127 24-149 (217)
257 COG2910 Putative NADH-flavin r 97.0 0.0027 5.9E-08 58.6 7.4 72 5-79 1-73 (211)
258 cd05311 NAD_bind_2_malic_enz N 97.0 0.0054 1.2E-07 59.4 10.1 106 5-123 26-145 (226)
259 PRK05442 malate dehydrogenase; 96.9 0.0029 6.2E-08 64.6 8.1 107 1-112 1-137 (326)
260 PRK10206 putative oxidoreducta 96.9 0.0082 1.8E-07 61.8 11.6 111 5-124 2-118 (344)
261 COG0169 AroE Shikimate 5-dehyd 96.9 0.0024 5.2E-08 63.7 7.1 117 5-127 127-248 (283)
262 KOG3124|consensus 96.9 0.0035 7.5E-08 60.7 7.6 147 5-164 1-155 (267)
263 cd05294 LDH-like_MDH_nadp A la 96.9 0.0051 1.1E-07 62.4 9.4 98 5-107 1-125 (309)
264 PRK09424 pntA NAD(P) transhydr 96.8 0.0052 1.1E-07 66.2 9.5 100 5-104 166-286 (509)
265 PF13460 NAD_binding_10: NADH( 96.8 0.0068 1.5E-07 55.8 9.1 69 7-79 1-71 (183)
266 PRK10792 bifunctional 5,10-met 96.8 0.0049 1.1E-07 61.4 8.1 74 5-106 160-234 (285)
267 TIGR02354 thiF_fam2 thiamine b 96.7 0.011 2.4E-07 56.1 10.2 33 4-36 21-54 (200)
268 cd01337 MDH_glyoxysomal_mitoch 96.7 0.0045 9.7E-08 62.7 7.6 100 5-110 1-122 (310)
269 PRK12548 shikimate 5-dehydroge 96.6 0.0071 1.5E-07 60.7 8.4 118 5-124 127-255 (289)
270 PLN02602 lactate dehydrogenase 96.6 0.011 2.3E-07 61.0 9.9 101 5-112 38-161 (350)
271 COG0771 MurD UDP-N-acetylmuram 96.6 0.0098 2.1E-07 62.9 9.7 124 4-133 7-148 (448)
272 PRK01710 murD UDP-N-acetylmura 96.6 0.017 3.7E-07 61.9 11.7 65 5-75 15-84 (458)
273 PRK14027 quinate/shikimate deh 96.6 0.006 1.3E-07 61.1 7.7 116 5-124 128-248 (283)
274 PF00899 ThiF: ThiF family; I 96.6 0.0024 5.2E-08 56.5 4.3 121 5-131 3-127 (135)
275 PRK05671 aspartate-semialdehyd 96.6 0.004 8.6E-08 63.9 6.4 97 1-106 1-100 (336)
276 PRK12749 quinate/shikimate deh 96.6 0.008 1.7E-07 60.4 8.4 118 5-125 125-253 (288)
277 PRK12475 thiamine/molybdopteri 96.6 0.015 3.3E-07 59.7 10.6 121 5-131 25-151 (338)
278 PRK11861 bifunctional prephena 96.6 0.063 1.4E-06 60.3 16.3 99 72-171 1-112 (673)
279 TIGR02356 adenyl_thiF thiazole 96.5 0.009 1.9E-07 56.8 8.1 121 5-131 22-146 (202)
280 cd05212 NAD_bind_m-THF_DH_Cycl 96.5 0.019 4E-07 51.3 9.4 74 5-106 29-103 (140)
281 PRK14192 bifunctional 5,10-met 96.5 0.0067 1.4E-07 60.7 7.3 73 5-105 160-233 (283)
282 PRK14176 bifunctional 5,10-met 96.5 0.012 2.6E-07 58.6 8.8 73 5-105 165-238 (287)
283 PRK00683 murD UDP-N-acetylmura 96.5 0.018 4E-07 60.8 10.8 39 1-40 1-39 (418)
284 PF02882 THF_DHG_CYH_C: Tetrah 96.4 0.0085 1.8E-07 54.7 6.9 74 5-106 37-111 (160)
285 TIGR01772 MDH_euk_gproteo mala 96.4 0.0092 2E-07 60.6 7.5 101 6-110 1-121 (312)
286 cd01487 E1_ThiF_like E1_ThiF_l 96.4 0.0082 1.8E-07 55.7 6.6 120 6-131 1-124 (174)
287 PRK14982 acyl-ACP reductase; P 96.4 0.018 3.9E-07 58.9 9.6 110 5-130 156-268 (340)
288 COG1064 AdhP Zn-dependent alco 96.4 0.019 4.1E-07 58.5 9.5 92 5-105 168-261 (339)
289 TIGR02717 AcCoA-syn-alpha acet 96.3 0.01 2.2E-07 63.4 7.8 107 5-127 8-127 (447)
290 PRK08328 hypothetical protein; 96.3 0.024 5.2E-07 55.1 9.7 121 5-131 28-153 (231)
291 CHL00194 ycf39 Ycf39; Provisio 96.3 0.015 3.3E-07 58.9 8.7 70 5-77 1-73 (317)
292 PLN02968 Probable N-acetyl-gam 96.3 0.0073 1.6E-07 63.0 6.5 96 4-106 38-137 (381)
293 cd05290 LDH_3 A subgroup of L- 96.3 0.021 4.5E-07 57.9 9.6 101 6-113 1-127 (307)
294 PRK07688 thiamine/molybdopteri 96.3 0.019 4.1E-07 59.0 9.3 122 4-131 24-151 (339)
295 PTZ00325 malate dehydrogenase; 96.2 0.016 3.5E-07 59.0 8.3 101 3-105 7-127 (321)
296 PRK14191 bifunctional 5,10-met 96.2 0.015 3.2E-07 58.0 7.7 74 5-106 158-232 (285)
297 PRK06392 homoserine dehydrogen 96.2 0.022 4.8E-07 58.2 9.0 126 5-134 1-149 (326)
298 TIGR01759 MalateDH-SF1 malate 96.2 0.025 5.4E-07 57.7 9.3 104 4-112 3-136 (323)
299 COG0002 ArgC Acetylglutamate s 96.2 0.017 3.6E-07 58.6 7.8 150 4-160 2-167 (349)
300 PRK05472 redox-sensing transcr 96.1 0.0081 1.8E-07 57.5 5.3 78 4-87 84-164 (213)
301 PRK05086 malate dehydrogenase; 96.1 0.019 4.1E-07 58.3 8.3 101 5-112 1-125 (312)
302 cd01338 MDH_choloroplast_like 96.1 0.016 3.4E-07 59.2 7.5 103 5-112 3-135 (322)
303 PRK08644 thiamine biosynthesis 96.1 0.021 4.5E-07 54.7 7.8 119 5-129 29-151 (212)
304 PRK14106 murD UDP-N-acetylmura 96.1 0.064 1.4E-06 57.1 12.4 68 4-77 5-77 (450)
305 PRK03369 murD UDP-N-acetylmura 96.0 0.078 1.7E-06 57.3 12.9 66 5-76 13-78 (488)
306 PLN00106 malate dehydrogenase 96.0 0.025 5.5E-07 57.6 8.6 99 5-105 19-137 (323)
307 PLN00112 malate dehydrogenase 96.0 0.027 5.9E-07 59.6 9.0 102 5-112 101-233 (444)
308 PF03720 UDPG_MGDP_dh_C: UDP-g 96.0 0.017 3.7E-07 48.9 6.1 86 15-106 18-104 (106)
309 PF02629 CoA_binding: CoA bind 96.0 0.014 3.1E-07 48.5 5.5 80 4-91 3-84 (96)
310 PRK14183 bifunctional 5,10-met 96.0 0.023 5E-07 56.5 7.8 74 5-106 158-232 (281)
311 COG4408 Uncharacterized protei 96.0 1.9 4E-05 43.6 20.8 101 1-105 1-122 (431)
312 cd00757 ThiF_MoeB_HesA_family 96.0 0.032 7E-07 54.0 8.7 122 4-131 21-146 (228)
313 cd01485 E1-1_like Ubiquitin ac 95.9 0.022 4.8E-07 53.9 7.2 123 5-132 20-149 (198)
314 PLN02477 glutamate dehydrogena 95.9 0.05 1.1E-06 57.2 10.3 113 5-126 207-332 (410)
315 PRK09414 glutamate dehydrogena 95.9 0.052 1.1E-06 57.6 10.5 115 5-125 233-364 (445)
316 PRK14874 aspartate-semialdehyd 95.9 0.015 3.3E-07 59.6 6.3 92 4-106 1-97 (334)
317 PF05368 NmrA: NmrA-like famil 95.9 0.031 6.8E-07 53.8 8.1 71 7-79 1-75 (233)
318 PRK06718 precorrin-2 dehydroge 95.9 0.025 5.5E-07 53.7 7.3 79 5-90 11-91 (202)
319 COG0039 Mdh Malate/lactate deh 95.8 0.031 6.7E-07 56.4 8.0 103 5-112 1-125 (313)
320 COG2344 AT-rich DNA-binding pr 95.8 0.02 4.3E-07 53.0 5.9 81 4-90 84-167 (211)
321 TIGR02355 moeB molybdopterin s 95.8 0.027 5.8E-07 55.0 7.2 121 5-131 25-149 (240)
322 PRK00141 murD UDP-N-acetylmura 95.8 0.11 2.3E-06 56.1 12.4 40 4-43 15-54 (473)
323 PRK08223 hypothetical protein; 95.7 0.042 9.1E-07 54.9 8.5 122 5-131 28-154 (287)
324 PRK14173 bifunctional 5,10-met 95.7 0.041 8.9E-07 54.9 8.2 74 5-106 156-230 (287)
325 cd01492 Aos1_SUMO Ubiquitin ac 95.7 0.037 8.1E-07 52.4 7.6 120 5-131 22-145 (197)
326 TIGR01470 cysG_Nterm siroheme 95.7 0.11 2.3E-06 49.6 10.7 67 5-79 10-80 (205)
327 PF03447 NAD_binding_3: Homose 95.6 0.046 1E-06 46.9 7.4 102 11-124 1-114 (117)
328 PRK06719 precorrin-2 dehydroge 95.6 0.054 1.2E-06 49.3 8.2 76 5-89 14-90 (157)
329 TIGR01757 Malate-DH_plant mala 95.6 0.054 1.2E-06 56.5 9.1 104 5-113 45-178 (387)
330 PRK14170 bifunctional 5,10-met 95.6 0.047 1E-06 54.4 8.2 74 5-106 158-232 (284)
331 PRK14186 bifunctional 5,10-met 95.6 0.046 9.9E-07 54.9 8.1 74 5-106 159-233 (297)
332 COG0460 ThrA Homoserine dehydr 95.6 0.044 9.6E-07 55.7 8.0 125 4-134 3-146 (333)
333 PRK02472 murD UDP-N-acetylmura 95.6 0.19 4.2E-06 53.4 13.4 115 5-124 6-137 (447)
334 PLN00141 Tic62-NAD(P)-related 95.5 0.041 8.8E-07 53.7 7.6 73 4-77 17-94 (251)
335 PRK00421 murC UDP-N-acetylmura 95.5 0.095 2.1E-06 56.1 11.0 113 3-122 6-134 (461)
336 PRK12550 shikimate 5-dehydroge 95.5 0.038 8.3E-07 55.0 7.4 110 5-125 123-236 (272)
337 cd01079 NAD_bind_m-THF_DH NAD 95.5 0.052 1.1E-06 51.0 7.7 88 5-105 63-158 (197)
338 PRK00676 hemA glutamyl-tRNA re 95.5 0.042 9.2E-07 56.1 7.8 34 5-38 175-209 (338)
339 PRK14172 bifunctional 5,10-met 95.5 0.048 1E-06 54.2 7.9 74 5-106 159-233 (278)
340 PRK08664 aspartate-semialdehyd 95.5 0.047 1E-06 56.4 8.3 95 4-106 3-110 (349)
341 PRK05690 molybdopterin biosynt 95.5 0.073 1.6E-06 52.2 9.2 121 4-130 32-156 (245)
342 PRK14177 bifunctional 5,10-met 95.5 0.053 1.2E-06 54.0 8.2 74 5-106 160-234 (284)
343 PRK14178 bifunctional 5,10-met 95.5 0.041 8.8E-07 54.7 7.3 73 5-105 153-226 (279)
344 PRK03803 murD UDP-N-acetylmura 95.5 0.13 2.9E-06 54.8 11.7 125 1-132 3-145 (448)
345 TIGR01019 sucCoAalpha succinyl 95.5 0.13 2.9E-06 51.5 10.9 114 3-128 5-121 (286)
346 PRK02006 murD UDP-N-acetylmura 95.4 0.15 3.2E-06 55.3 12.1 67 5-75 8-76 (498)
347 PRK14169 bifunctional 5,10-met 95.4 0.054 1.2E-06 54.0 7.9 74 5-106 157-231 (282)
348 PRK14852 hypothetical protein; 95.4 0.055 1.2E-06 62.1 9.0 123 4-131 332-459 (989)
349 PRK14180 bifunctional 5,10-met 95.4 0.054 1.2E-06 54.0 7.9 74 5-106 159-233 (282)
350 PRK05678 succinyl-CoA syntheta 95.4 0.095 2.1E-06 52.6 9.7 116 3-129 7-124 (291)
351 PRK01390 murD UDP-N-acetylmura 95.4 0.16 3.6E-06 54.3 12.3 43 5-47 10-52 (460)
352 PRK14166 bifunctional 5,10-met 95.4 0.056 1.2E-06 53.8 8.0 74 5-106 158-232 (282)
353 cd00704 MDH Malate dehydrogena 95.4 0.039 8.5E-07 56.3 7.1 102 6-112 2-133 (323)
354 cd05313 NAD_bind_2_Glu_DH NAD( 95.4 0.16 3.5E-06 49.9 10.9 115 5-126 39-175 (254)
355 PRK14187 bifunctional 5,10-met 95.3 0.058 1.3E-06 54.0 7.9 74 5-106 161-235 (294)
356 PRK14030 glutamate dehydrogena 95.3 0.079 1.7E-06 56.1 9.1 115 5-126 229-365 (445)
357 PLN02520 bifunctional 3-dehydr 95.3 0.12 2.6E-06 56.4 10.8 110 5-123 380-493 (529)
358 PRK05993 short chain dehydroge 95.3 0.057 1.2E-06 53.4 7.7 45 1-45 1-46 (277)
359 PRK14573 bifunctional D-alanyl 95.3 0.14 3E-06 58.9 11.8 115 1-122 1-131 (809)
360 PRK08374 homoserine dehydrogen 95.2 0.13 2.8E-06 52.8 10.3 125 5-134 3-155 (336)
361 PRK00961 H(2)-dependent methyl 95.2 0.66 1.4E-05 45.6 14.2 108 52-167 128-240 (342)
362 PRK01438 murD UDP-N-acetylmura 95.2 0.15 3.3E-06 54.8 11.2 33 5-37 17-49 (480)
363 PRK08163 salicylate hydroxylas 95.2 0.024 5.2E-07 59.0 4.9 38 1-38 1-38 (396)
364 PRK14190 bifunctional 5,10-met 95.2 0.07 1.5E-06 53.2 7.8 74 5-106 159-233 (284)
365 cd01336 MDH_cytoplasmic_cytoso 95.2 0.066 1.4E-06 54.8 7.9 102 5-111 3-134 (325)
366 TIGR01546 GAPDH-II_archae glyc 95.2 0.11 2.4E-06 53.1 9.4 39 7-45 1-41 (333)
367 PRK14193 bifunctional 5,10-met 95.2 0.077 1.7E-06 52.9 8.0 74 5-106 159-235 (284)
368 PRK05884 short chain dehydroge 95.1 0.2 4.4E-06 47.9 10.9 41 5-45 1-42 (223)
369 PRK05597 molybdopterin biosynt 95.1 0.083 1.8E-06 54.7 8.6 122 5-132 29-154 (355)
370 PLN02516 methylenetetrahydrofo 95.1 0.076 1.7E-06 53.3 7.9 74 5-106 168-242 (299)
371 PRK14851 hypothetical protein; 95.1 0.083 1.8E-06 59.1 8.9 122 5-131 44-170 (679)
372 PRK14182 bifunctional 5,10-met 95.0 0.084 1.8E-06 52.6 7.9 74 5-106 158-232 (282)
373 PRK08762 molybdopterin biosynt 95.0 0.15 3.3E-06 53.1 10.3 121 5-131 136-260 (376)
374 PRK14171 bifunctional 5,10-met 95.0 0.085 1.8E-06 52.7 7.8 73 5-105 160-233 (288)
375 TIGR01771 L-LDH-NAD L-lactate 94.9 0.092 2E-06 53.0 8.2 96 9-111 1-119 (299)
376 TIGR03649 ergot_EASG ergot alk 94.9 0.078 1.7E-06 52.6 7.6 69 6-78 1-77 (285)
377 PLN02353 probable UDP-glucose 94.9 0.16 3.4E-06 54.7 10.2 114 5-128 325-466 (473)
378 PLN02616 tetrahydrofolate dehy 94.9 0.088 1.9E-06 54.0 7.8 74 5-106 232-306 (364)
379 PRK07878 molybdopterin biosynt 94.9 0.13 2.7E-06 54.1 9.2 121 5-131 43-167 (392)
380 COG0190 FolD 5,10-methylene-te 94.9 0.098 2.1E-06 51.8 7.8 74 5-106 157-231 (283)
381 TIGR01087 murD UDP-N-acetylmur 94.8 0.2 4.3E-06 53.1 10.8 113 6-125 1-132 (433)
382 COG0499 SAM1 S-adenosylhomocys 94.8 0.067 1.5E-06 54.4 6.6 87 5-104 210-297 (420)
383 PLN02897 tetrahydrofolate dehy 94.8 0.095 2.1E-06 53.5 7.8 73 5-105 215-288 (345)
384 cd00755 YgdL_like Family of ac 94.8 0.17 3.6E-06 49.2 9.2 124 4-132 11-138 (231)
385 TIGR01758 MDH_euk_cyt malate d 94.8 0.081 1.7E-06 54.1 7.2 102 6-112 1-132 (324)
386 COG2227 UbiG 2-polyprenyl-3-me 94.7 0.18 3.9E-06 48.8 9.0 94 5-103 61-161 (243)
387 PRK08040 putative semialdehyde 94.7 0.043 9.4E-07 56.2 5.1 96 1-106 1-100 (336)
388 TIGR01082 murC UDP-N-acetylmur 94.7 0.25 5.4E-06 52.8 11.1 110 6-122 1-126 (448)
389 TIGR01723 hmd_TIGR 5,10-methen 94.7 0.95 2.1E-05 44.7 13.8 111 52-167 126-238 (340)
390 PRK04308 murD UDP-N-acetylmura 94.7 0.37 8E-06 51.3 12.3 115 5-123 6-138 (445)
391 TIGR02964 xanthine_xdhC xanthi 94.6 0.35 7.6E-06 47.4 11.1 112 4-122 100-212 (246)
392 PRK06847 hypothetical protein; 94.6 0.039 8.5E-07 57.0 4.7 38 1-38 1-38 (375)
393 PRK14181 bifunctional 5,10-met 94.6 0.12 2.7E-06 51.5 7.9 74 5-106 154-232 (287)
394 TIGR00978 asd_EA aspartate-sem 94.6 0.1 2.2E-06 53.7 7.7 94 5-106 1-107 (341)
395 PRK06180 short chain dehydroge 94.6 0.23 5E-06 49.0 10.0 45 1-45 1-46 (277)
396 PRK07454 short chain dehydroge 94.5 0.2 4.4E-06 48.0 9.2 42 3-44 5-47 (241)
397 PRK14031 glutamate dehydrogena 94.5 0.19 4.1E-06 53.3 9.4 113 5-125 229-363 (444)
398 PLN02383 aspartate semialdehyd 94.5 0.1 2.2E-06 53.8 7.2 91 3-106 6-103 (344)
399 PRK02705 murD UDP-N-acetylmura 94.5 0.41 9E-06 51.1 12.2 33 6-38 2-34 (459)
400 PLN03209 translocon at the inn 94.4 0.17 3.7E-06 55.3 9.1 41 5-45 81-122 (576)
401 PRK07877 hypothetical protein; 94.4 0.12 2.7E-06 58.0 8.3 124 4-134 107-234 (722)
402 PRK10537 voltage-gated potassi 94.4 0.42 9.1E-06 50.1 11.6 110 5-125 241-353 (393)
403 PRK05600 thiamine biosynthesis 94.3 0.14 3.1E-06 53.3 8.0 120 5-130 42-165 (370)
404 cd05298 GH4_GlvA_pagL_like Gly 94.3 0.29 6.3E-06 52.1 10.4 71 5-79 1-85 (437)
405 COG1486 CelF Alpha-galactosida 94.3 0.31 6.6E-06 51.4 10.3 110 4-117 3-160 (442)
406 PF00208 ELFV_dehydrog: Glutam 94.3 0.15 3.2E-06 49.9 7.6 113 5-126 33-168 (244)
407 PRK07060 short chain dehydroge 94.3 0.16 3.4E-06 48.8 7.7 41 5-45 10-51 (245)
408 PRK14168 bifunctional 5,10-met 94.3 0.17 3.6E-06 50.9 8.0 74 5-106 162-240 (297)
409 PRK12429 3-hydroxybutyrate deh 94.3 0.23 4.9E-06 48.0 8.9 41 4-44 4-45 (258)
410 TIGR01296 asd_B aspartate-semi 94.2 0.061 1.3E-06 55.3 5.0 89 6-105 1-94 (339)
411 PRK12409 D-amino acid dehydrog 94.2 0.058 1.3E-06 56.6 4.9 33 5-37 2-34 (410)
412 PRK07236 hypothetical protein; 94.2 0.062 1.4E-06 55.9 5.0 34 5-38 7-40 (386)
413 PRK08306 dipicolinate synthase 94.2 0.17 3.6E-06 51.1 7.9 108 5-128 3-121 (296)
414 PRK05653 fabG 3-ketoacyl-(acyl 94.1 0.19 4.2E-06 47.9 8.0 40 5-44 6-46 (246)
415 PRK14185 bifunctional 5,10-met 94.1 0.18 3.9E-06 50.5 7.8 74 5-106 158-236 (293)
416 TIGR01851 argC_other N-acetyl- 94.1 0.14 3E-06 51.8 7.0 81 5-106 2-83 (310)
417 PRK11863 N-acetyl-gamma-glutam 94.1 0.085 1.8E-06 53.5 5.6 81 4-106 2-84 (313)
418 PRK06182 short chain dehydroge 94.0 0.41 9E-06 47.0 10.4 41 4-44 3-44 (273)
419 TIGR03736 PRTRC_ThiF PRTRC sys 94.0 0.15 3.3E-06 49.8 7.0 34 4-37 11-55 (244)
420 PRK15116 sulfur acceptor prote 94.0 0.27 5.8E-06 48.8 8.7 119 5-128 31-153 (268)
421 PRK07411 hypothetical protein; 93.9 0.23 4.9E-06 52.1 8.5 122 5-132 39-164 (390)
422 PRK06101 short chain dehydroge 93.9 0.26 5.7E-06 47.4 8.5 41 6-46 3-44 (240)
423 PRK08309 short chain dehydroge 93.9 0.45 9.7E-06 44.2 9.6 101 5-123 1-101 (177)
424 PLN00016 RNA-binding protein; 93.8 0.23 4.9E-06 51.7 8.5 37 4-40 52-93 (378)
425 COG0289 DapB Dihydrodipicolina 93.8 0.49 1.1E-05 46.4 9.8 35 4-38 2-39 (266)
426 cd05197 GH4_glycoside_hydrolas 93.7 0.59 1.3E-05 49.6 11.4 72 5-79 1-85 (425)
427 PRK12809 putative oxidoreducta 93.7 0.2 4.3E-06 56.0 8.2 34 4-37 310-343 (639)
428 PRK14167 bifunctional 5,10-met 93.7 0.24 5.2E-06 49.7 7.9 74 5-106 158-236 (297)
429 cd01489 Uba2_SUMO Ubiquitin ac 93.7 0.13 2.9E-06 52.1 6.1 121 6-131 1-125 (312)
430 PF13450 NAD_binding_8: NAD(P) 93.6 0.11 2.4E-06 40.2 4.3 30 9-38 1-30 (68)
431 COG0026 PurK Phosphoribosylami 93.6 0.11 2.4E-06 53.1 5.3 37 5-41 2-38 (375)
432 PLN02657 3,8-divinyl protochlo 93.6 0.64 1.4E-05 48.7 11.3 38 3-40 59-97 (390)
433 PRK11908 NAD-dependent epimera 93.6 0.17 3.6E-06 51.9 6.8 40 4-43 1-42 (347)
434 PRK10538 malonic semialdehyde 93.5 0.48 1E-05 45.8 9.6 40 5-44 1-41 (248)
435 PRK08340 glucose-1-dehydrogena 93.5 0.47 1E-05 46.2 9.5 40 5-44 1-41 (259)
436 KOG3007|consensus 93.4 0.25 5.4E-06 48.4 7.1 112 7-127 141-260 (333)
437 cd01484 E1-2_like Ubiquitin ac 93.4 0.21 4.5E-06 48.6 6.8 122 6-131 1-126 (234)
438 PRK12939 short chain dehydroge 93.4 0.42 9.2E-06 45.8 9.1 40 5-44 8-48 (250)
439 PRK07326 short chain dehydroge 93.4 0.55 1.2E-05 44.8 9.8 40 5-44 7-47 (237)
440 PRK06019 phosphoribosylaminoim 93.4 0.16 3.5E-06 52.8 6.4 36 4-39 2-37 (372)
441 PF03059 NAS: Nicotianamine sy 93.4 0.23 5E-06 49.4 7.1 99 5-103 122-230 (276)
442 TIGR03466 HpnA hopanoid-associ 93.3 0.13 2.9E-06 51.6 5.6 71 5-77 1-73 (328)
443 PRK06728 aspartate-semialdehyd 93.3 0.2 4.4E-06 51.5 6.8 96 1-106 1-102 (347)
444 COG4091 Predicted homoserine d 93.3 1.2 2.6E-05 45.4 11.9 154 5-169 18-184 (438)
445 cd01491 Ube1_repeat1 Ubiquitin 93.3 0.22 4.9E-06 49.8 6.9 117 5-131 20-140 (286)
446 PRK00711 D-amino acid dehydrog 93.3 0.1 2.3E-06 54.7 4.8 34 5-38 1-34 (416)
447 PLN02896 cinnamyl-alcohol dehy 93.3 0.41 8.8E-06 49.1 9.1 41 4-44 10-51 (353)
448 cd05296 GH4_P_beta_glucosidase 93.2 0.6 1.3E-05 49.4 10.4 72 5-79 1-86 (419)
449 PRK03806 murD UDP-N-acetylmura 93.2 1 2.2E-05 47.8 12.4 33 5-37 7-39 (438)
450 PRK05786 fabG 3-ketoacyl-(acyl 93.2 0.85 1.8E-05 43.5 10.7 40 5-44 6-46 (238)
451 PRK09880 L-idonate 5-dehydroge 93.2 0.56 1.2E-05 47.9 10.0 44 5-48 171-215 (343)
452 COG0334 GdhA Glutamate dehydro 93.2 0.38 8.3E-06 50.1 8.5 107 5-125 208-332 (411)
453 PRK14184 bifunctional 5,10-met 93.1 0.27 5.8E-06 49.1 7.1 73 5-105 158-235 (286)
454 PRK08265 short chain dehydroge 93.1 0.66 1.4E-05 45.3 9.9 40 5-44 7-47 (261)
455 PRK05868 hypothetical protein; 93.1 0.1 2.3E-06 54.2 4.4 35 4-38 1-35 (372)
456 PRK06753 hypothetical protein; 93.1 0.11 2.4E-06 53.7 4.5 34 5-38 1-34 (373)
457 PRK12826 3-ketoacyl-(acyl-carr 93.1 0.59 1.3E-05 44.8 9.4 40 5-44 7-47 (251)
458 PRK08219 short chain dehydroge 93.0 0.33 7.1E-06 45.9 7.5 40 4-44 3-43 (227)
459 PF02056 Glyco_hydro_4: Family 93.0 0.38 8.3E-06 44.9 7.6 71 6-79 1-84 (183)
460 TIGR03325 BphB_TodD cis-2,3-di 93.0 0.61 1.3E-05 45.5 9.6 41 5-45 6-47 (262)
461 PRK09186 flagellin modificatio 92.9 0.63 1.4E-05 45.0 9.4 90 1-103 1-91 (256)
462 PRK14174 bifunctional 5,10-met 92.9 0.33 7.3E-06 48.7 7.5 73 5-105 160-237 (295)
463 PRK13394 3-hydroxybutyrate deh 92.9 0.45 9.7E-06 46.1 8.3 41 5-45 8-49 (262)
464 TIGR01777 yfcH conserved hypot 92.9 0.21 4.6E-06 49.2 6.1 65 8-78 2-67 (292)
465 TIGR03366 HpnZ_proposed putati 92.8 0.82 1.8E-05 45.3 10.3 93 5-103 122-218 (280)
466 PF01494 FAD_binding_3: FAD bi 92.8 0.12 2.6E-06 52.1 4.4 34 5-38 2-35 (356)
467 PRK05693 short chain dehydroge 92.8 0.85 1.8E-05 44.8 10.3 40 5-44 2-42 (274)
468 PRK08267 short chain dehydroge 92.8 0.78 1.7E-05 44.6 9.9 41 5-45 2-43 (260)
469 PRK07024 short chain dehydroge 92.8 0.64 1.4E-05 45.2 9.3 41 5-45 3-44 (257)
470 COG1063 Tdh Threonine dehydrog 92.8 0.63 1.4E-05 48.0 9.6 95 6-105 171-271 (350)
471 PRK06179 short chain dehydroge 92.8 0.47 1E-05 46.4 8.4 81 1-104 1-82 (270)
472 PF00070 Pyr_redox: Pyridine n 92.7 0.21 4.5E-06 39.6 4.8 33 6-38 1-33 (80)
473 PRK06057 short chain dehydroge 92.7 0.82 1.8E-05 44.3 9.9 40 5-44 8-48 (255)
474 PRK06953 short chain dehydroge 92.7 0.35 7.5E-06 46.0 7.1 41 5-45 2-43 (222)
475 PRK12769 putative oxidoreducta 92.7 0.36 7.8E-06 54.2 8.2 33 5-37 328-360 (654)
476 PRK06598 aspartate-semialdehyd 92.7 0.28 6E-06 50.9 6.7 93 5-106 2-101 (369)
477 PRK00377 cbiT cobalt-precorrin 92.6 1.3 2.7E-05 41.7 10.8 113 5-122 42-163 (198)
478 PLN02695 GDP-D-mannose-3',5'-e 92.6 0.24 5.1E-06 51.5 6.3 36 2-37 19-55 (370)
479 COG0665 DadA Glycine/D-amino a 92.6 0.16 3.6E-06 52.4 5.1 38 1-38 1-38 (387)
480 PRK07825 short chain dehydroge 92.6 0.88 1.9E-05 44.6 10.1 40 5-44 6-46 (273)
481 PRK07774 short chain dehydroge 92.6 0.68 1.5E-05 44.5 9.1 40 5-44 7-47 (250)
482 PRK07523 gluconate 5-dehydroge 92.6 0.69 1.5E-05 44.8 9.2 40 5-44 11-51 (255)
483 PRK12828 short chain dehydroge 92.5 0.8 1.7E-05 43.4 9.4 83 5-104 8-91 (239)
484 PRK07074 short chain dehydroge 92.5 0.88 1.9E-05 44.1 9.8 41 5-45 3-44 (257)
485 cd08230 glucose_DH Glucose deh 92.4 0.69 1.5E-05 47.4 9.4 44 5-48 174-220 (355)
486 PRK07364 2-octaprenyl-6-methox 92.4 0.16 3.5E-06 53.2 4.8 35 4-38 18-52 (415)
487 KOG1370|consensus 92.4 0.53 1.2E-05 46.9 7.9 89 6-106 216-304 (434)
488 COG0300 DltE Short-chain dehyd 92.3 0.69 1.5E-05 45.7 8.7 85 4-102 6-91 (265)
489 PRK12829 short chain dehydroge 92.3 0.84 1.8E-05 44.2 9.4 41 5-45 12-53 (264)
490 PRK03815 murD UDP-N-acetylmura 92.3 0.66 1.4E-05 48.9 9.2 107 5-121 1-115 (401)
491 PRK01368 murD UDP-N-acetylmura 92.3 0.96 2.1E-05 48.5 10.5 121 4-131 6-140 (454)
492 PRK05732 2-octaprenyl-6-methox 92.3 0.19 4E-06 52.2 5.0 35 2-36 1-38 (395)
493 TIGR01318 gltD_gamma_fam gluta 92.2 0.54 1.2E-05 50.5 8.6 33 5-37 142-174 (467)
494 PF04016 DUF364: Domain of unk 92.2 0.091 2E-06 47.3 2.2 88 4-106 11-98 (147)
495 PRK07538 hypothetical protein; 92.2 0.16 3.4E-06 53.5 4.4 34 5-38 1-34 (413)
496 PRK04690 murD UDP-N-acetylmura 92.2 1 2.3E-05 48.3 10.8 32 5-36 9-40 (468)
497 PRK07045 putative monooxygenas 92.2 0.17 3.6E-06 52.7 4.6 38 1-38 1-39 (388)
498 KOG0023|consensus 92.2 0.42 9E-06 48.1 7.0 40 5-45 183-223 (360)
499 TIGR03855 NAD_NadX aspartate d 92.1 0.77 1.7E-05 44.5 8.7 84 30-123 5-91 (229)
500 PLN02427 UDP-apiose/xylose syn 92.1 0.4 8.6E-06 49.9 7.3 41 4-44 14-56 (386)
No 1
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-92 Score=694.36 Aligned_cols=305 Identities=66% Similarity=1.108 Sum_probs=294.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++.||+||||+||.+||+|++++||+|.+|||+++++++|.+......++.++.|++|++++|++|+.|++||.++.+|+
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD 82 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD 82 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence 46899999999999999999999999999999999999999887766789999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP 163 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~ 163 (490)
+++++|+|+|.+||||||+||++|+||.||.+.+.++|++|+.++||||+++|++||+||+||++++|+.++|+|+++++
T Consensus 83 ~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~IaA 162 (473)
T COG0362 83 AVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKIAA 162 (473)
T ss_pred HHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997765
Q ss_pred ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhc
Q psy9637 164 SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFD 243 (490)
Q Consensus 164 ~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~ 243 (490)
T Consensus 163 -------------------------------------------------------------------------------- 162 (473)
T COG0362 163 -------------------------------------------------------------------------------- 162 (473)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCC
Q psy9637 244 KNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAP 323 (490)
Q Consensus 244 ~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~ 323 (490)
T Consensus 163 -------------------------------------------------------------------------------- 162 (473)
T COG0362 163 -------------------------------------------------------------------------------- 162 (473)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeecccCCCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcc
Q psy9637 324 GKFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNK 403 (490)
Q Consensus 324 ~~~~h~~w~~~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~ 403 (490)
+++++|||+|+||+||||||||||||||||+||+|||+|.|||..+|||++||++||+.||+
T Consensus 163 ------------------k~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~ 224 (473)
T COG0362 163 ------------------KVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNK 224 (473)
T ss_pred ------------------hcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 23578999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHhcccCCC-CCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhc
Q psy9637 404 GELDSFLIEITKDILKFKDTD-GAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVL 482 (490)
Q Consensus 404 g~~~s~l~~~~~~~~~~~~~~-~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~ 482 (490)
|+|+|||+|||++||++||++ ++|++|.|+|.++||||||||+++|+++|||+|+|++|||+|++|+.|++|..+++.|
T Consensus 225 geL~SYLIeIT~~IL~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~Ask~l 304 (473)
T COG0362 225 GELDSYLIEITADILRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKVL 304 (473)
T ss_pred CcchHHHHHHHHHHHhhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHHHHhhc
Confidence 999999999999999999986 4599999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy9637 483 QGPN 486 (490)
Q Consensus 483 ~~~~ 486 (490)
.+|.
T Consensus 305 ~~~~ 308 (473)
T COG0362 305 AGPK 308 (473)
T ss_pred CCCC
Confidence 8884
No 2
>KOG2653|consensus
Probab=100.00 E-value=7.9e-86 Score=639.30 Aligned_cols=307 Identities=74% Similarity=1.234 Sum_probs=295.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.++||+|||+.||.++++|++++||.|.+|||+.++++++.+...++.+|.++.|++|++..|++|++|+++|+++.+|+
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD 85 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVD 85 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHH
Confidence 47899999999999999999999999999999999999999877767778899999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP 163 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~ 163 (490)
..+++|.|+|.+||+|||+||+.|++|.||.+.+.++|+-|+.++||||+++|+.||++|+||++++|..++++|+.+++
T Consensus 86 ~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ifq~iaa 165 (487)
T KOG2653|consen 86 QFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKDIFQKIAA 165 (487)
T ss_pred HHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997754
Q ss_pred ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhc
Q psy9637 164 SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFD 243 (490)
Q Consensus 164 ~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~ 243 (490)
++
T Consensus 166 kv------------------------------------------------------------------------------ 167 (487)
T KOG2653|consen 166 KV------------------------------------------------------------------------------ 167 (487)
T ss_pred Hh------------------------------------------------------------------------------
Confidence 20
Q ss_pred cCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCC
Q psy9637 244 KNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAP 323 (490)
Q Consensus 244 ~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~ 323 (490)
T Consensus 168 -------------------------------------------------------------------------------- 167 (487)
T KOG2653|consen 168 -------------------------------------------------------------------------------- 167 (487)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeecccCCCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcc
Q psy9637 324 GKFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNK 403 (490)
Q Consensus 324 ~~~~h~~w~~~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~ 403 (490)
.+++|||.|+|++||||||||||||||||+||+|+|+|++|+..+|+|++||+++|+.||+
T Consensus 168 -------------------~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~ 228 (487)
T KOG2653|consen 168 -------------------SDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNK 228 (487)
T ss_pred -------------------cCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 2568999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHhcccCCCCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhcC
Q psy9637 404 GELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQ 483 (490)
Q Consensus 404 g~~~s~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~~ 483 (490)
|+|.|||+|||.+||+.+|.+|+|++|+|+|.++|||||+|||+.|+|+|+|+|+|.+|||+|++|..|++|..+|++|.
T Consensus 229 geleSfLieIT~dIlk~~d~~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ask~L~ 308 (487)
T KOG2653|consen 229 GELESFLIEITADILKFKDEDGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRASKVLK 308 (487)
T ss_pred cchhHHHHHHhHHHhheeccCCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy9637 484 GPNP 487 (490)
Q Consensus 484 ~~~~ 487 (490)
+|..
T Consensus 309 gp~~ 312 (487)
T KOG2653|consen 309 GPGV 312 (487)
T ss_pred CCCC
Confidence 9864
No 3
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-79 Score=570.33 Aligned_cols=283 Identities=43% Similarity=0.714 Sum_probs=262.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|+||+||||+||.+|++||.+.||+|++||+|++.++++...++. .++|+.++++.|..|++||+|||++..+++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~-----~a~sl~el~~~L~~pr~vWlMvPag~it~~ 75 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGAT-----GAASLDELVAKLSAPRIVWLMVPAGDITDA 75 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCc-----cccCHHHHHHhcCCCcEEEEEccCCCchHH
Confidence 589999999999999999999999999999999999999988754 689999999999999999999999999999
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCCc
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPS 164 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~~ 164 (490)
+++++.+.|++||+|||.+|++|++++++.+.++++|++|+|+++|||+++++.|.|+|+|||++++++++|+|++++.
T Consensus 76 vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA~- 154 (300)
T COG1023 76 VIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAP- 154 (300)
T ss_pred HHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred eeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhcc
Q psy9637 165 FETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDK 244 (490)
Q Consensus 165 ~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~ 244 (490)
|+
T Consensus 155 ----ge-------------------------------------------------------------------------- 156 (300)
T COG1023 155 ----GE-------------------------------------------------------------------------- 156 (300)
T ss_pred ----Cc--------------------------------------------------------------------------
Confidence 11
Q ss_pred CcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCC
Q psy9637 245 NPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPG 324 (490)
Q Consensus 245 ~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~ 324 (490)
T Consensus 157 -------------------------------------------------------------------------------- 156 (300)
T COG1023 157 -------------------------------------------------------------------------------- 156 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeecccCCCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccC
Q psy9637 325 KFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKG 404 (490)
Q Consensus 325 ~~~h~~w~~~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g 404 (490)
.++.||||.|||||||||||||||||||+|||+|+||+. ..+ +.|+.+|.+.||+|
T Consensus 157 ----------------------~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~-s~f-D~D~~~VA~vW~hG 212 (300)
T COG1023 157 ----------------------DGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKN-SPF-DYDLEAVAEVWNHG 212 (300)
T ss_pred ----------------------CccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHh-CCC-CCCHHHHHHHHhCc
Confidence 124589999999999999999999999999999999997 444 34999999999999
Q ss_pred c-chhHHHHHHHHHhcccCCCCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhc
Q psy9637 405 E-LDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVL 482 (490)
Q Consensus 405 ~-~~s~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~ 482 (490)
| |+|||||+|+.+|++ | +.||.|.+++.++|||||||++|+|++||+|+|+.||++||.|...+. ...|++
T Consensus 213 SVIrSWLldLt~~Af~~-d----~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d~--f~~kvl 284 (300)
T COG1023 213 SVIRSWLLDLTAEAFKK-D----PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDT--FAGKVL 284 (300)
T ss_pred chHHHHHHHHHHHHHhh-C----CCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccchhh--HHHHHH
Confidence 9 999999999999994 4 679999999999999999999999999999999999999999965533 444444
No 4
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-73 Score=599.76 Aligned_cols=304 Identities=59% Similarity=0.974 Sum_probs=284.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|||||+|.||.+||+||+++||+|++|||++++++.+.+.+.. +..+..+++++++++.|+++|+||+|||++++++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 589999999999999999999999999999999999999875322 2234578999999998888999999999999999
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP 163 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~ 163 (490)
++++++.+.|.+|++|||+||+.|.++.++.+.+.++|++|+|+|||||+++|++|+++|+||++++|++++|+|+.+++
T Consensus 82 ~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~ia~ 161 (470)
T PTZ00142 82 ETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCSA 161 (470)
T ss_pred HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhc
Q psy9637 164 SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFD 243 (490)
Q Consensus 164 ~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~ 243 (490)
+
T Consensus 162 ~------------------------------------------------------------------------------- 162 (470)
T PTZ00142 162 K------------------------------------------------------------------------------- 162 (470)
T ss_pred h-------------------------------------------------------------------------------
Confidence 1
Q ss_pred cCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCC
Q psy9637 244 KNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAP 323 (490)
Q Consensus 244 ~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~ 323 (490)
T Consensus 163 -------------------------------------------------------------------------------- 162 (470)
T PTZ00142 163 -------------------------------------------------------------------------------- 162 (470)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeecccCCCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcc
Q psy9637 324 GKFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNK 403 (490)
Q Consensus 324 ~~~~h~~w~~~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~ 403 (490)
++++||+.|+|+.|+|||||||||+|||++||+++|+|.|+++..|++++++.++|+.||+
T Consensus 163 -------------------~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~ 223 (470)
T PTZ00142 163 -------------------VGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNE 223 (470)
T ss_pred -------------------cCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcC
Confidence 2357999999999999999999999999999999999999986589999999999999999
Q ss_pred CcchhHHHHHHHHHhcccCCCC-CcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhc
Q psy9637 404 GELDSFLIEITKDILKFKDTDG-APLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVL 482 (490)
Q Consensus 404 g~~~s~l~~~~~~~~~~~~~~~-~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~ 482 (490)
|+++|||+||+.++|+++|++| .|+||.|+|+++|||||+|||+||++++||+|+|++|||+|++|++|++|+..++.+
T Consensus 224 g~~~S~l~ei~~~~~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~~~~~~ 303 (470)
T PTZ00142 224 GILNSYLIEITAKILAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASSHL 303 (470)
T ss_pred CCccCHHHHHHHHHhhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHHhcccc
Confidence 9999999999999999887665 799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy9637 483 QGPN 486 (490)
Q Consensus 483 ~~~~ 486 (490)
.+|.
T Consensus 304 ~gp~ 307 (470)
T PTZ00142 304 AGPN 307 (470)
T ss_pred CCCc
Confidence 8874
No 5
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=6.4e-71 Score=581.04 Aligned_cols=303 Identities=68% Similarity=1.160 Sum_probs=283.8
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDF 85 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~v 85 (490)
+|||||+|.||.+||+||+++||+|++|||++++++.+.+.+..+..+..+.+++++++.+++||+||+|||++.+++++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 59999999999999999999999999999999999999875322223456889999999888899999999999999999
Q ss_pred HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCCce
Q psy9637 86 IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSF 165 (490)
Q Consensus 86 l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~~~ 165 (490)
++++.+.+++|++|||+||+.|.++.++.+.+.++|++|+|+|||||+++|++|+++|+||++++|++++|+|+.++.+
T Consensus 81 i~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~~- 159 (467)
T TIGR00873 81 INQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAAK- 159 (467)
T ss_pred HHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhhh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred eeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccC
Q psy9637 166 ETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKN 245 (490)
Q Consensus 166 ~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~ 245 (490)
T Consensus 160 -------------------------------------------------------------------------------- 159 (467)
T TIGR00873 160 -------------------------------------------------------------------------------- 159 (467)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCC
Q psy9637 246 PALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGK 325 (490)
Q Consensus 246 ~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~ 325 (490)
T Consensus 160 -------------------------------------------------------------------------------- 159 (467)
T TIGR00873 160 -------------------------------------------------------------------------------- 159 (467)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeecccCCCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCc
Q psy9637 326 FVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGE 405 (490)
Q Consensus 326 ~~h~~w~~~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~ 405 (490)
++++||+.|+||.|+|||||||||+|||++||+++|+|.||++..|++++++.++|+.||+|.
T Consensus 160 -----------------~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~ 222 (467)
T TIGR00873 160 -----------------VDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGE 222 (467)
T ss_pred -----------------cCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCc
Confidence 235699999999999999999999999999999999999997668999999999999999988
Q ss_pred chhHHHHHHHHHhcccCCCCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhcCCC
Q psy9637 406 LDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGP 485 (490)
Q Consensus 406 ~~s~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~~~~ 485 (490)
++|||+|++.++|++||++|.|+||.|+|+++|||||+|||+||++++||+|+|++|+++|+.|.+|++|...++.+.+|
T Consensus 223 ~~S~l~~~~~~~~~~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp 302 (467)
T TIGR00873 223 LDSYLIEITADILKKKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKVLSGP 302 (467)
T ss_pred ccchHHHhHHHHHhccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHHhhcccCCC
Confidence 99999999999999888878899999999999999999999999999999999999999999999999999999999877
Q ss_pred C
Q psy9637 486 N 486 (490)
Q Consensus 486 ~ 486 (490)
.
T Consensus 303 ~ 303 (467)
T TIGR00873 303 L 303 (467)
T ss_pred C
Confidence 4
No 6
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-70 Score=575.41 Aligned_cols=294 Identities=60% Similarity=1.013 Sum_probs=276.7
Q ss_pred HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-ccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccC
Q psy9637 15 MGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-EAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLL 93 (490)
Q Consensus 15 MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l 93 (490)
||.+||+||+++||+|++|||++++++.+.+. +. +.++..+.|++++++++++||+||+|||++.++++|++++++.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcC
Confidence 89999999999999999999999999999874 32 23356899999999999889999999999999999999999999
Q ss_pred CCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCCceeeCCCCCC
Q psy9637 94 EKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPK 173 (490)
Q Consensus 94 ~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~ 173 (490)
.+|++|||+||+.|.++.++.+.++++|++|+|+|||||+++|++|+++|+||++++|++++|+|+.++.++
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~-------- 151 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKV-------- 151 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhh--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999876420
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccC
Q psy9637 174 PQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLL 253 (490)
Q Consensus 174 ~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~ 253 (490)
T Consensus 152 -------------------------------------------------------------------------------- 151 (459)
T PRK09287 152 -------------------------------------------------------------------------------- 151 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeecccC
Q psy9637 254 DPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTG 333 (490)
Q Consensus 254 ~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~~ 333 (490)
T Consensus 152 -------------------------------------------------------------------------------- 151 (459)
T PRK09287 152 -------------------------------------------------------------------------------- 151 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHH
Q psy9637 334 HGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEI 413 (490)
Q Consensus 334 ~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~ 413 (490)
.+|+|||.|+||.|+|||||||||+|||++||+|+|+|.|+++.+|++++++.++|+.||+|+++|||+|+
T Consensus 152 ---------~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei 222 (459)
T PRK09287 152 ---------EDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEI 222 (459)
T ss_pred ---------cCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHh
Confidence 14679999999999999999999999999999999999999965899999999999999999999999999
Q ss_pred HHHHhcccCC-CCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhcCCCC
Q psy9637 414 TKDILKFKDT-DGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPN 486 (490)
Q Consensus 414 ~~~~~~~~~~-~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~~~~~ 486 (490)
+.+++.++|. +|.|+||+|+|+++|||||+||+++|+++|||+|+|++|+|+|+.|.+|++|+..++.+.+|.
T Consensus 223 ~~~~l~~~d~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~ 296 (459)
T PRK09287 223 TADILRQKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPA 296 (459)
T ss_pred HhHHHhcCCCCCCCcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHHhhcccCCCC
Confidence 9999998775 678999999999999999999999999999999999999999999999999999999998874
No 7
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=2.1e-66 Score=546.89 Aligned_cols=305 Identities=51% Similarity=0.850 Sum_probs=282.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-C-CCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-G-TNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-~-~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+++|||||||.||.+||+||+++||+|++|||++++++.+.+.+.. + ..+..+.|++|++++|++||+||+|||+++
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~ 84 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGA 84 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcH
Confidence 45789999999999999999999999999999999999999874211 1 123468899999999999999999999999
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHh
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~ 160 (490)
++++|++++++.+.+|++|||+||+.|.++.++.+.++++|++|+|+|||||+.+|+.|+++|+||++++|++++|+|+.
T Consensus 85 aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~pvL~~ 164 (493)
T PLN02350 85 PVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEK 164 (493)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHH
Q psy9637 161 LNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA 240 (490)
Q Consensus 161 l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~ 240 (490)
++++
T Consensus 165 ia~k---------------------------------------------------------------------------- 168 (493)
T PLN02350 165 VAAQ---------------------------------------------------------------------------- 168 (493)
T ss_pred Hhhh----------------------------------------------------------------------------
Confidence 7642
Q ss_pred hhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccc
Q psy9637 241 AFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELL 320 (490)
Q Consensus 241 ~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~ 320 (490)
T Consensus 169 -------------------------------------------------------------------------------- 168 (493)
T PLN02350 169 -------------------------------------------------------------------------------- 168 (493)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCceeecccCCCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q psy9637 321 AAPGKFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFED 400 (490)
Q Consensus 321 ~~~~~~~h~~w~~~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~ 400 (490)
.+++||+.|+|+.|+|||||||||+|||++||+++|+|.++++.+|++++++.++|+.
T Consensus 169 ----------------------~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~ 226 (493)
T PLN02350 169 ----------------------VDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAE 226 (493)
T ss_pred ----------------------cCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 2456899999999999999999999999999999999999997569999999999999
Q ss_pred hccCcchhHHHHHHHHHhcccCC-CCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHH
Q psy9637 401 WNKGELDSFLIEITKDILKFKDT-DGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKAS 479 (490)
Q Consensus 401 w~~g~~~s~l~~~~~~~~~~~~~-~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~ 479 (490)
||.|+++|||+|++.+++..+|+ ...+.+|.|.|.++|||||+|++++|.++|+|+|+|++|+++|+.|++|++|+.++
T Consensus 227 ~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~~ 306 (493)
T PLN02350 227 WNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAA 306 (493)
T ss_pred HcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999999987652 32479999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCC
Q psy9637 480 QVLQGP 485 (490)
Q Consensus 480 ~~~~~~ 485 (490)
++|++|
T Consensus 307 ~~~~~~ 312 (493)
T PLN02350 307 KVFKEA 312 (493)
T ss_pred hhcCCC
Confidence 999876
No 8
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=3e-51 Score=411.84 Aligned_cols=294 Identities=32% Similarity=0.577 Sum_probs=269.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|+|||||+|.||.+||++|+++||+|.+|||++++++.+.+.+.. .+.+++++++.++.+|+||+|||++ .+++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~-----~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~ 74 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTT-----GVANLRELSQRLSAPRVVWVMVPHG-IVDA 74 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCc-----ccCCHHHHHhhcCCCCEEEEEcCch-HHHH
Confidence 479999999999999999999999999999999999999876543 4678888888777799999999998 9999
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC-
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP- 163 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~- 163 (490)
+++++.+.+++|++|||+||+.|.++.++.+.++++|++|+|+||+||+.+++.|.++|+||+++++++++|+|+.++.
T Consensus 75 v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~~~ 154 (298)
T TIGR00872 75 VLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVAPE 154 (298)
T ss_pred HHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred --ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHh
Q psy9637 164 --SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAA 241 (490)
Q Consensus 164 --~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~ 241 (490)
.++|+|+.| .++++|+++|++.++.+.+++|++.+++++ +||+|+++++++|+.||+++|++++.+..+
T Consensus 155 ~~~~~~~G~~G-----~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~----g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~ 225 (298)
T TIGR00872 155 EQGYLYCGPCG-----SGHFVKMVHNGIEYGMMAAIAEGFEILRNS----QFDFDIPEVARVWRRGSVIRSWLLDLTAIA 225 (298)
T ss_pred CCCEEEECCcc-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcCHHHHHHHHcCCchhHhHHHHHHHHH
Confidence 588999876 578999999999999999999999999998 889999999999999999999999999999
Q ss_pred hccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhC-CChhhhHHHHHHhhcccccccc
Q psy9637 242 FDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSK-RLPANLLQAQRDYFGAHTYELL 320 (490)
Q Consensus 242 ~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~-g~~~~~~~a~rd~fgah~~~r~ 320 (490)
+.+++.+.+ |...+ ...+|.++++..|.+.|+|+|.+++++.++...... .+|.|++|+||||||+|+|+++
T Consensus 226 ~~~~~~~~~------~~~~~-~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~fg~h~~~~~ 298 (298)
T TIGR00872 226 FRESPDLAE------FSGRV-SDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGGHAEKKK 298 (298)
T ss_pred HhcCCcHHH------HHHHH-HhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhCCCCcCCC
Confidence 988764332 44332 356778999999999999999999999988888888 8999999999999999999873
No 9
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=4.3e-51 Score=400.76 Aligned_cols=280 Identities=26% Similarity=0.347 Sum_probs=262.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH-HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK-VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+||||||||.||.+||.||.++||+|++|||++++ .+.+.+.|.. .+.++.|+++. +|+||+|||++.+++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~-----~a~s~~eaa~~---aDvVitmv~~~~~V~ 72 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGAT-----VAASPAEAAAE---ADVVITMLPDDAAVR 72 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCc-----ccCCHHHHHHh---CCEEEEecCCHHHHH
Confidence 48999999999999999999999999999999999 6666666764 68999999998 999999999999999
Q ss_pred HHH---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHH
Q psy9637 84 DFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159 (490)
Q Consensus 84 ~vl---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~ 159 (490)
+|+ +++.+.+++|.++||+||+.|..+++..+.++++|++|+|+|||||+.+|.+|+ +||+||++++|++++|+|+
T Consensus 73 ~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~ 152 (286)
T COG2084 73 AVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLE 152 (286)
T ss_pred HHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHH
Confidence 999 578889999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhH
Q psy9637 160 KLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIK 239 (490)
Q Consensus 160 ~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~ 239 (490)
.+|.+++|+|+.| .++.+|++||.+.++++++++|++.+++++ |+|++.+.++++++. .+||+++..
T Consensus 153 ~~g~~i~~~G~~G-----~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~------Gld~~~~~~vi~~~~-~~s~~~e~~- 219 (286)
T COG2084 153 AMGKNIVHVGPVG-----AGQAAKLANNILLAGNIAALAEALALAEKA------GLDPDVVLEVISGGA-AGSWILENY- 219 (286)
T ss_pred HhcCceEEECCCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhccc-cCChHHHhh-
Confidence 9999999999987 468999999999999999999999999999 999999999999885 789998873
Q ss_pred HhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 240 AAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 240 ~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
.+++.+..|+|.| .++++.||++++.+.|++.++++|+.+.+.++|+.+...|++.+|.+++.++|
T Consensus 220 -----~~~m~~~~~~p~F--~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l 285 (286)
T COG2084 220 -----GPRMLEGDFSPGF--AVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLL 285 (286)
T ss_pred -----cchhhcCCCCcch--hHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHh
Confidence 4677888899987 78999999999999999999999999999999999999999999999887664
No 10
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=5.9e-50 Score=403.17 Aligned_cols=295 Identities=35% Similarity=0.585 Sum_probs=264.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|+|||||+|.||.+||++|+++||+|++|||++++++.+.+.+. ..+++++++++.++.+|+||+|+|++.++++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~-----~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~ 75 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGA-----TGADSLEELVAKLPAPRVVWLMVPAGEITDA 75 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCC-----eecCCHHHHHhhcCCCCEEEEEecCCcHHHH
Confidence 48999999999999999999999999999999999999877654 3678999998876557999999999889999
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC-
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP- 163 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~- 163 (490)
+++++.+.+++|++|||+||+.|..+.++.+.++++|++|+|+||+||+.+++.|.++|+||+++++++++|+|+.++.
T Consensus 76 v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~~~ 155 (301)
T PRK09599 76 TIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPR 155 (301)
T ss_pred HHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHH
Q psy9637 164 ---SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA 240 (490)
Q Consensus 164 ---~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~ 240 (490)
+++++|+.| .++.+|+++|++.++.+.+++|++.++++ ++||+|+++++++|+.||+++|++++....
T Consensus 156 ~~~~~~~~G~~G-----~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~----~~~gld~~~~~~~~~~~~~~~s~~l~~~~~ 226 (301)
T PRK09599 156 AEDGYLHAGPVG-----AGHFVKMVHNGIEYGMMQAYAEGFELLEA----SRFDLDLAAVAEVWRRGSVIRSWLLDLTAD 226 (301)
T ss_pred ccCCeEeECCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCCCHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 899999986 57899999999999999999999999999 467999999999999999999999999877
Q ss_pred hhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHH-HHHHHhCCChhhhHHHHHHhhccccccc
Q psy9637 241 AFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAF-YDGYRSKRLPANLLQAQRDYFGAHTYEL 319 (490)
Q Consensus 241 ~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~-~~~~~~~g~~~~~~~a~rd~fgah~~~r 319 (490)
.+.+++.+ +.+...++. .||++++++.|.+.|+|+|+++++..+ |..+.+.++|.+++|+||||||+|+|+|
T Consensus 227 ~~~~~~~~------~~~~~~~kd-~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~~~~ 299 (301)
T PRK09599 227 ALAEDPKL------DEISGYVED-SGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHAVKK 299 (301)
T ss_pred HHhcCCCH------HHHHHHHHh-hCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCccC
Confidence 77544221 112112222 556799999999999999999997776 8899999999999999999999999999
Q ss_pred c
Q psy9637 320 L 320 (490)
Q Consensus 320 ~ 320 (490)
+
T Consensus 300 ~ 300 (301)
T PRK09599 300 K 300 (301)
T ss_pred C
Confidence 6
No 11
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=2.4e-48 Score=391.08 Aligned_cols=291 Identities=32% Similarity=0.576 Sum_probs=262.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|+|||||+|.||.+||++|.++|++|++|||++++.+.+.+.+. ..+.+++++++.++.+|+||+|||++..+++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~-----~~~~s~~~~~~~~~~advVi~~vp~~~~~~~ 75 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGI-----TARHSLEELVSKLEAPRTIWVMVPAGEVTES 75 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCC-----eecCCHHHHHHhCCCCCEEEEEecCchHHHH
Confidence 47999999999999999999999999999999999998876554 3678999998875557999999999889999
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC-
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP- 163 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~- 163 (490)
+++++.+.+++|++|||+||+.|.++.++.+.+.++|++|+|+||+||+.+++.|.++|+||+++++++++|+|+.++.
T Consensus 76 v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~~~ 155 (299)
T PRK12490 76 VIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALAPE 155 (299)
T ss_pred HHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred --ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHh
Q psy9637 164 --SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAA 241 (490)
Q Consensus 164 --~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~ 241 (490)
+++|+|+.| .++.+|+++|++.++.+.+++|++.+++++ +||+|+++++++|+.+|+++|++++.....
T Consensus 156 ~~~~~~~G~~g-----~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~----g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~ 226 (299)
T PRK12490 156 GPGYVHAGPVG-----SGHFLKMVHNGIEYGMMQAYAEGLELLDKS----DFDFDVEDVARLWRNGSVIRSWLLDLTVKA 226 (299)
T ss_pred CCcEEEECCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----ccCCCHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 789999886 689999999999999999999999999998 367999999999999899999999986655
Q ss_pred hccCcccccccCChhHHHHHHHHHHHH---HHHHHHHHHcCCCchHHHHHH-HHHHHHHhCCChhhhHHHHHHhhccccc
Q psy9637 242 FDKNPALSNLLLDPFFKDAIHATQSSW---RAVVSQSALLGIPTPAFATAL-AFYDGYRSKRLPANLLQAQRDYFGAHTY 317 (490)
Q Consensus 242 ~~~~~~~~~~~~~~~f~~~l~~~~kDl---~~~~~~A~~~gv~~P~~~aa~-~~~~~~~~~g~~~~~~~a~rd~fgah~~ 317 (490)
+..+ . +...++.+.||+ +++++.|.+.|+|+|++++++ .+|......+.+.+++|+|||+||+|+|
T Consensus 227 ~~~~------~----~~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~~~~~ 296 (299)
T PRK12490 227 LAED------P----KLAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGGHAV 296 (299)
T ss_pred HhhC------C----ChhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhCCCCC
Confidence 4321 1 123578899998 899999999999999999997 6677777777779999999999999999
Q ss_pred cc
Q psy9637 318 EL 319 (490)
Q Consensus 318 ~r 319 (490)
+.
T Consensus 297 ~~ 298 (299)
T PRK12490 297 KT 298 (299)
T ss_pred CC
Confidence 75
No 12
>KOG0409|consensus
Probab=100.00 E-value=5.8e-48 Score=371.27 Aligned_cols=281 Identities=23% Similarity=0.323 Sum_probs=259.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++|||||+|.||.+|+.||.++||+|++|||+.++.+.|.+.|+. .+++|.|+++. +|+||+|||++.+++
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~-----v~~sPaeVae~---sDvvitmv~~~~~v~ 106 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGAR-----VANSPAEVAED---SDVVITMVPNPKDVK 106 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchh-----hhCCHHHHHhh---cCEEEEEcCChHhhH
Confidence 4789999999999999999999999999999999999999999875 79999999998 999999999999999
Q ss_pred HHHH---hhcccCCCCCEE-EcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHH
Q psy9637 84 DFID---KLVPLLEKGDII-IDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIF 158 (490)
Q Consensus 84 ~vl~---~l~~~l~~g~ii-Id~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll 158 (490)
+++. +++..+++|... ||+||+.|..+.++.+.+..++.+|+|+|||||..+|+.|. +||+|||++.|+++.|+|
T Consensus 107 ~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~ 186 (327)
T KOG0409|consen 107 DVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVF 186 (327)
T ss_pred HHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHH
Confidence 9994 566667788877 99999999999999999999999999999999999999999 999999999999999999
Q ss_pred HhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHh
Q psy9637 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNI 238 (490)
Q Consensus 159 ~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i 238 (490)
+.++.+++++|..| .++.+|+++|++.+++++.++|++.|+.++ |||..+++++++.|... |+++..
T Consensus 187 ~~mGk~~~~~G~~G-----nG~~~Kl~nnm~~g~~M~g~aEal~la~r~------GLd~~~l~eiln~G~~~-S~~~~~- 253 (327)
T KOG0409|consen 187 KLMGKNVVFLGGVG-----NGQAAKLCNNMLLGSSMVGLAEALALADRL------GLDAKKLLEILNTGRCW-SSMFYN- 253 (327)
T ss_pred HHhcceEEEecccC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCCcc-cHHHhC-
Confidence 99999999999987 467899999999999999999999999999 99999999999987643 434333
Q ss_pred HHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 239 KAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
..|.+..++|.|+| .++.+.||++++...+.+.++|+|+.+.+.|+|+...+.|+++.|.+++.+.|
T Consensus 254 -----~~p~m~k~dy~p~f--~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~ 320 (327)
T KOG0409|consen 254 -----PVPGMLKGDYNPGF--ALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAF 320 (327)
T ss_pred -----cCchhhcCCCCCcc--hHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHH
Confidence 46777888899998 57789999999999999999999999999999999999999999999998765
No 13
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=7.7e-45 Score=423.12 Aligned_cols=284 Identities=17% Similarity=0.171 Sum_probs=258.9
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
|....+|||||+|.||.+||+||+++||+|++|||++++++++.+.|+. .++|+.|+++. +|+||+|||++.
T Consensus 1 ~~~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~-----~~~s~~e~a~~---advVi~~l~~~~ 72 (1378)
T PLN02858 1 AQSAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGH-----RCDSPAEAAKD---AAALVVVLSHPD 72 (1378)
T ss_pred CCCCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCe-----ecCCHHHHHhc---CCEEEEEcCChH
Confidence 4455789999999999999999999999999999999999999987753 68999999987 899999999999
Q ss_pred hHHHHH---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcc--ccccccCCCCCccccccCC-ccCCCCCcchHHHH
Q psy9637 81 AVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKG--LLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPAL 154 (490)
Q Consensus 81 ~v~~vl---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~g--i~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v 154 (490)
++++|+ +++++.+.+|++|||+||+.|..++++.+.+.++| +.|+|+||+||+.+|+.|. .+|+||++++++++
T Consensus 73 ~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~ 152 (1378)
T PLN02858 73 QVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRA 152 (1378)
T ss_pred HHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHH
Confidence 999998 57888899999999999999999999999999999 9999999999999999999 99999999999999
Q ss_pred HHHHHhhCCceee-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhH
Q psy9637 155 KPIFQKLNPSFET-SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSV 233 (490)
Q Consensus 155 ~~ll~~l~~~~~~-~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~ 233 (490)
+|+|+.++.++++ +|+.| .++.+|+++|++.++++++++|++.+++++ |||++.++++++.++ .+|+
T Consensus 153 ~p~l~~~g~~i~~~~G~~G-----~g~~~KL~nN~l~~~~~~a~aEAl~la~~~------Gld~~~l~~vl~~s~-g~s~ 220 (1378)
T PLN02858 153 QPFLSAMCQKLYTFEGEIG-----AGSKVKMVNELLEGIHLVASAEAMALGVRA------GIHPWIIYDIISNAA-GSSW 220 (1378)
T ss_pred HHHHHHhcCceEEecCCCC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCC-ccCH
Confidence 9999999999876 58876 678999999999999999999999999999 999999999999876 5677
Q ss_pred hHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 234 FLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 234 ~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
+++.. .+.+.+..|.+.| .++.+.||+++++++|++.|+|+|+.+.+.+.|+.+.+.|++++|.+++.+++
T Consensus 221 ~~~~~------~~~~~~~d~~~~F--~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~ 291 (1378)
T PLN02858 221 IFKNH------VPLLLKDDYIEGR--FLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVW 291 (1378)
T ss_pred HHHhh------hhHhhcCCCCCCc--hhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHH
Confidence 76652 3455666777776 68899999999999999999999999999999999999999998888776555
No 14
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=100.00 E-value=1e-46 Score=368.17 Aligned_cols=129 Identities=61% Similarity=1.027 Sum_probs=112.4
Q ss_pred cchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCCCCCcchhhhccccC
Q psy9637 358 GHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAG 437 (490)
Q Consensus 358 gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~~~~~~l~~i~~~~~ 437 (490)
|||||||||||||||||+|||+|++||+.++++++||++||+.||+|+|+|||+||+++||++||.+|.|+||.|+|+++
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~I~d~a~ 80 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDKILDKAG 80 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGGB-S---
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhhhCCccC
Confidence 89999999999999999999999999988999999999999999999999999999999999988788999999999999
Q ss_pred CCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhcCCCC
Q psy9637 438 QKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPN 486 (490)
Q Consensus 438 ~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~~~~~ 486 (490)
|||||+||++||+++|||+|+|++||++|++|+.|++|+++++.+++|.
T Consensus 81 ~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~ 129 (291)
T PF00393_consen 81 QKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQ 129 (291)
T ss_dssp -BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S
T ss_pred CCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999998864
No 15
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=5.5e-44 Score=357.66 Aligned_cols=281 Identities=20% Similarity=0.278 Sum_probs=253.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|||||||+|.||.+||++|.++||+|++|||++. .+.+.+.+. ..+.++.++++. +|+||+|||++.++++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~-----~~~~s~~~~~~~---advVi~~v~~~~~v~~ 71 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGA-----VSVETARQVTEA---SDIIFIMVPDTPQVEE 71 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCC-----eecCCHHHHHhc---CCEEEEeCCChHHHHH
Confidence 4799999999999999999999999999999975 566665544 357889998876 8999999999988999
Q ss_pred HHH---hhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHh
Q psy9637 85 FID---KLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 85 vl~---~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~ 160 (490)
++. ++.+.+.+|++|||+||+.|.+++++.+.+.++|+.|+|+||+||+.+++.|+ .+|+||+++++++++|+|+.
T Consensus 72 v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~ 151 (292)
T PRK15059 72 VLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFEL 151 (292)
T ss_pred HHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHH
Confidence 983 46777889999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHH
Q psy9637 161 LNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA 240 (490)
Q Consensus 161 l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~ 240 (490)
++.+++++|+.| .++.+|+++|++.++++.+++|++.+++++ |+|+++++++++.+. ++|++++..
T Consensus 152 ~g~~~~~~G~~G-----~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~------Gld~~~~~~~l~~~~-~~s~~~~~~-- 217 (292)
T PRK15059 152 LGKNITLVGGNG-----DGQTCKVANQIIVALNIEAVSEALLFASKA------GADPVRVRQALMGGF-ASSRILEVH-- 217 (292)
T ss_pred HcCCcEEeCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHcCc-ccCHHHHhh--
Confidence 999999999976 688999999999999999999999999999 999999999998765 677777653
Q ss_pred hhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcc
Q psy9637 241 AFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGA 314 (490)
Q Consensus 241 ~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fga 314 (490)
.+.+.+..|++.| +++.+.||++++++.|++.|+++|+.+++.++|+.+.+.|++++|.+++.++|..
T Consensus 218 ----~~~~~~~~~~~~f--~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~ 285 (292)
T PRK15059 218 ----GERMIKRTFNPGF--KIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALEL 285 (292)
T ss_pred ----chhhhcCCCCCCC--chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHH
Confidence 3456667777776 6889999999999999999999999999999999999999999999999887653
No 16
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-42 Score=347.76 Aligned_cols=282 Identities=18% Similarity=0.206 Sum_probs=253.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+.. .+.++.++++. +|+||+|||+...++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~-----~~~s~~~~~~~---aDvVi~~vp~~~~~~~ 73 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGAT-----PAASPAQAAAG---AEFVITMLPNGDLVRS 73 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCc-----ccCCHHHHHhc---CCEEEEecCCHHHHHH
Confidence 489999999999999999999999999999999999998876543 57888888877 8999999999877888
Q ss_pred HHH---hhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHh
Q psy9637 85 FID---KLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 85 vl~---~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~ 160 (490)
++. ++.+.+++|.++||+||..|..+.++.+.+.++|+.|+|+||+|++..++.|. ++|+||+++++++++|+|+.
T Consensus 74 vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~ 153 (296)
T PRK15461 74 VLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMA 153 (296)
T ss_pred HHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHH
Confidence 874 56777889999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHH
Q psy9637 161 LNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA 240 (490)
Q Consensus 161 l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~ 240 (490)
++.+++++|+.| .++.+|+++|++...++++++|++.+++++ |+|++.++++++.+....+.+....
T Consensus 154 ~g~~~~~~g~~G-----~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------Gld~~~~~~~l~~~~~~~~~~~~~~-- 220 (296)
T PRK15461 154 MGNELINAGGPG-----MGIRVKLINNYMSIALNALSAEAAVLCEAL------GLSFDVALKVMSGTAAGKGHFTTTW-- 220 (296)
T ss_pred HcCCeEeeCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCcccChHHHccc--
Confidence 999999999886 678999999999999999999999999999 9999999999987764433333221
Q ss_pred hhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 241 AFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 241 ~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
.+.+.+..|++.| .++.+.||+++++++|++.|+|+|+.+++.++|+.+.+.|++++|.+++.+++.
T Consensus 221 ----~~~~~~~~~~~~f--~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 287 (296)
T PRK15461 221 ----PNKVLKGDLSPAF--MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVR 287 (296)
T ss_pred ----cchhccCCCCCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 1245566788877 789999999999999999999999999999999999999999999999987764
No 17
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=5.6e-41 Score=335.95 Aligned_cols=282 Identities=19% Similarity=0.237 Sum_probs=249.3
Q ss_pred EEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHH--
Q psy9637 9 LIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFI-- 86 (490)
Q Consensus 9 iIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl-- 86 (490)
|||+|.||.+||++|+++||+|++|||++++.+.+.+.+. ..+.++.+++++ +|+||+|||++.++++++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~-----~~~~s~~~~~~~---advVil~vp~~~~~~~v~~g 72 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGA-----QAAASPAEAAEG---ADRVITMLPAGQHVISVYSG 72 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCC-----eecCCHHHHHhc---CCEEEEeCCChHHHHHHHcC
Confidence 6899999999999999999999999999999999887654 257789998887 899999999988899998
Q ss_pred -HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHhhCCc
Q psy9637 87 -DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKLNPS 164 (490)
Q Consensus 87 -~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~l~~~ 164 (490)
+++.+.+.+|++|||+||..|..+++..+.+.++|++|+|+||+||+.+++.|+ .+|+||+++.+++++|+|+.++.+
T Consensus 73 ~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~ 152 (288)
T TIGR01692 73 DEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRN 152 (288)
T ss_pred cchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCC
Confidence 678888899999999999999999998899999999999999999999999999 999999999999999999999999
Q ss_pred eeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhcc
Q psy9637 165 FETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDK 244 (490)
Q Consensus 165 ~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~ 244 (490)
++++|+.| .++.+|+++|++.+..+++++|++.++++. |+|++++.++++.+. .+++++.........
T Consensus 153 ~~~~g~~g-----~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~------Gld~~~~~~~~~~~~-~~s~~~~~~~~~~~~ 220 (288)
T TIGR01692 153 IVHCGDHG-----AGQAAKICNNMLLGISMIGTAEAMALGEKL------GLDPKVLFEIANTSS-GRCWSSDTYNPVPGV 220 (288)
T ss_pred eEeeCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCC-ccCcHHHHhCCCccc
Confidence 99999876 678999999999999999999999999999 999999999998765 455555532110000
Q ss_pred -CcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 245 -NPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 245 -~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
...+.++.|++.| .+..+.||++++.++|++.|+|+|+.+.+.++|+.+.+.|+++.|.+++.+++
T Consensus 221 ~~~~~~~~~~~~~f--~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 221 MPQAPASNGYQGGF--GTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred cccccccCCCCCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 0122446677777 67789999999999999999999999999999999999999999999987764
No 18
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=1.1e-38 Score=319.83 Aligned_cols=281 Identities=21% Similarity=0.318 Sum_probs=251.6
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDF 85 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~v 85 (490)
+|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+.. .++++.+++++ +|+||+|||+...++.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----~~~~~~~~~~~---aDivi~~vp~~~~~~~v 72 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAV-----TAETARQVTEQ---ADVIFTMVPDSPQVEEV 72 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCc-----ccCCHHHHHhc---CCEEEEecCCHHHHHHH
Confidence 59999999999999999999999999999999999998876542 46788888877 99999999998788888
Q ss_pred H---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHhh
Q psy9637 86 I---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161 (490)
Q Consensus 86 l---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~l 161 (490)
+ +++.+.++++.+|||+||..|.++.++.+.+.++|++|+|+|++|++..+..|. .+|+||+++++++++++|+.+
T Consensus 73 ~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~l 152 (291)
T TIGR01505 73 AFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEAL 152 (291)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHh
Confidence 7 456777889999999999999888898899999999999999999999999998 999999999999999999999
Q ss_pred CCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHh
Q psy9637 162 NPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAA 241 (490)
Q Consensus 162 ~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~ 241 (490)
+.+++++|+.| .++.+|+++|++.+.++.+++|++.++++. |+|++++.++++.+. .+|++++..
T Consensus 153 g~~~~~~g~~g-----~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gid~~~~~~~l~~~~-~~s~~~~~~--- 217 (291)
T TIGR01505 153 GKNIVLVGGNG-----DGQTCKVANQIIVALNIEAVSEALVFASKA------GVDPVRVRQALRGGL-AGSTVLEVK--- 217 (291)
T ss_pred cCCeEEeCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCc-ccCHHHHhh---
Confidence 99999999865 678999999999999999999999999999 999999999998765 466766653
Q ss_pred hccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcc
Q psy9637 242 FDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGA 314 (490)
Q Consensus 242 ~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fga 314 (490)
.+.+.+..|.++| .+.++.||++++++++++.|+++|+.+++.++|+.+...|+++.|..++.++|..
T Consensus 218 ---~~~~~~~~~~~~f--~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 285 (291)
T TIGR01505 218 ---GERVIDRTFKPGF--RIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALEL 285 (291)
T ss_pred ---ChhhhcCCCCCCc--chHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 2344455666666 6788999999999999999999999999999999999999999999999988753
No 19
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=9.8e-39 Score=320.93 Aligned_cols=282 Identities=21% Similarity=0.318 Sum_probs=251.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+|+|||||+|.||..||.+|+++|++|.+|||++++.+.+.+.+. ..++++.++++. +|+||+|+|+...++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~-----~~~~~~~e~~~~---~d~vi~~vp~~~~~~ 73 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGA-----ETASTAKAVAEQ---CDVIITMLPNSPHVK 73 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCC-----eecCCHHHHHhc---CCEEEEeCCCHHHHH
Confidence 368999999999999999999999999999999999988876553 356788888876 899999999988888
Q ss_pred HHH---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHH
Q psy9637 84 DFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159 (490)
Q Consensus 84 ~vl---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~ 159 (490)
.++ +++.+.+.+|++|||+||..|..++++.+.+..+|++|+|+||+||+..+..|. .+|+||+++++++++++|+
T Consensus 74 ~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~ 153 (296)
T PRK11559 74 EVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMK 153 (296)
T ss_pred HHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHH
Confidence 887 457888899999999999999888888898888999999999999999999998 8999999999999999999
Q ss_pred hhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhH
Q psy9637 160 KLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIK 239 (490)
Q Consensus 160 ~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~ 239 (490)
.++.+++++|+.| .++.+|+++|++.+.++++++|++.++++. |+|++++.++++.+. ..|++++..
T Consensus 154 ~~~~~~~~~g~~g-----~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~l~~~~-~~s~~~~~~- 220 (296)
T PRK11559 154 AMAGSVVHTGDIG-----AGNVTKLANQVIVALNIAAMSEALVLATKA------GVNPDLVYQAIRGGL-AGSTVLDAK- 220 (296)
T ss_pred HhcCCeEEeCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCc-ccCHHHHhh-
Confidence 9999999999875 678999999999999999999999999999 999999999998654 445555542
Q ss_pred HhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 240 AAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 240 ~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
.+.+.++.+.++| +++...||++++++++++.|+++|+++.+.+.|+.+.+.|+++.|..++.+++.
T Consensus 221 -----~~~~~~~d~~~~f--~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 287 (296)
T PRK11559 221 -----APMVMDRNFKPGF--RIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYE 287 (296)
T ss_pred -----chHhhcCCCCCCc--chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHH
Confidence 2334455677766 678899999999999999999999999999999999999999999999988874
No 20
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=7e-38 Score=364.99 Aligned_cols=281 Identities=17% Similarity=0.178 Sum_probs=255.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||.+||.+|+++||+|++|||++++++.+.+.+.. .+.++.++++. +|+||+|||++.++++
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~-----~~~s~~e~~~~---aDvVi~~V~~~~~v~~ 396 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGL-----AGNSPAEVAKD---VDVLVIMVANEVQAEN 396 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe-----ecCCHHHHHhc---CCEEEEecCChHHHHH
Confidence 689999999999999999999999999999999999999877653 47899999987 8999999999899999
Q ss_pred HH---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH--ccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHH
Q psy9637 85 FI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA--KGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIF 158 (490)
Q Consensus 85 vl---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~--~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll 158 (490)
|+ .++++.+.+|++|||+||+.|..+++..+.+++ +|++|+|+||+||+.+++.|. ++|+||+++++++++|+|
T Consensus 397 Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL 476 (1378)
T PLN02858 397 VLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVL 476 (1378)
T ss_pred HHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHH
Confidence 98 457788899999999999999999999999988 899999999999999999999 999999999999999999
Q ss_pred HhhCCceee-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhH
Q psy9637 159 QKLNPSFET-SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGN 237 (490)
Q Consensus 159 ~~l~~~~~~-~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~ 237 (490)
+.++.++++ .|+.| .++.+|+++|++.++++++++|++.+++++ |||+++++++++.+. .+|++++.
T Consensus 477 ~~lg~~i~~~~g~~G-----~a~~~KL~nN~l~~~~~aa~aEal~la~k~------Gld~~~l~evl~~s~-g~s~~~~~ 544 (1378)
T PLN02858 477 SALSEKLYVIKGGCG-----AGSGVKMVNQLLAGVHIASAAEAMAFGARL------GLNTRKLFDIISNAG-GTSWMFEN 544 (1378)
T ss_pred HHHhCcEEEeCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhhc-ccChhhhh
Confidence 999999887 46666 689999999999999999999999999999 999999999998776 56676654
Q ss_pred hHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 238 IKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 238 i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
. .+.+.+..|++.| .++.+.||++++++.+++.|+|+|+.+++.++|+.+.+.|+++.+.+++.+++.
T Consensus 545 ~------~~~~l~~d~~~~f--~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~ 612 (1378)
T PLN02858 545 R------VPHMLDNDYTPYS--ALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYE 612 (1378)
T ss_pred c------cchhhcCCCCCCc--hhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Confidence 2 3456667777776 688999999999999999999999999999999999999999999999887774
No 21
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-34 Score=285.09 Aligned_cols=159 Identities=64% Similarity=1.089 Sum_probs=155.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCC
Q psy9637 175 QRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLD 254 (490)
Q Consensus 175 ~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~ 254 (490)
.+++.++++.++++++++++++|+|+|.+.++++++++|+|++.+++.+||+||||||.||+.|..+|.++|.+.|++++
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~ 391 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLA 391 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeecccCC
Q psy9637 255 PFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGH 334 (490)
Q Consensus 255 ~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~~~ 334 (490)
|+|...+...+.+||.++..|.+.|+|+|.+++++.||++++++.+|+|++||||||||||||+|+|++| +||++|+++
T Consensus 392 pyF~~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~-~fHt~W~~~ 470 (473)
T COG0362 392 PYFKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEG-FFHTNWTGG 470 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhccccHHHHHHHHHhhcccceeecCCCC-ccccCccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 899999865
No 22
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=100.00 E-value=1.1e-32 Score=269.47 Aligned_cols=156 Identities=58% Similarity=1.035 Sum_probs=136.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCCh
Q psy9637 176 RDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDP 255 (490)
Q Consensus 176 g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~ 255 (490)
.+...+++.+.++++++.+++|+|+|.+.++++++++|++|+.+++++||+||||||+||+.+..+|.++|.+.|++++|
T Consensus 136 ~~~~~~i~~l~~Aly~~~i~~yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~ 215 (291)
T PF00393_consen 136 EDKEEFIEDLRKALYAAKIISYAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDP 215 (291)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeeccc
Q psy9637 256 FFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332 (490)
Q Consensus 256 ~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~ 332 (490)
.|...+.....++|.++..|.+.|+|+|+++++++||+.+++..+|+|++||||||||+|||+|+|++|. ||++|+
T Consensus 216 ~f~~~l~~~~~~lR~vV~~ai~~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~-fH~~W~ 291 (291)
T PF00393_consen 216 YFAEELKDNQPSLRRVVSLAIEAGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGS-FHTEWS 291 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSE-E---TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCC-cCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 999995
No 23
>KOG2653|consensus
Probab=100.00 E-value=2.7e-32 Score=266.02 Aligned_cols=167 Identities=74% Similarity=1.252 Sum_probs=161.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChh
Q psy9637 177 DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPF 256 (490)
Q Consensus 177 ~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~ 256 (490)
.+.++++.+.++++++.+++|+|+|.|.++++++++|.++...+..+|++||||||.||+.|.++|.++|.+.|++++|.
T Consensus 319 ~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~nll~d~f 398 (487)
T KOG2653|consen 319 DKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLANLLLDPF 398 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhhhccCHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeecccCCCC
Q psy9637 257 FKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGG 336 (490)
Q Consensus 257 f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~~~~~ 336 (490)
|...+...+.+||.++..|.+.|+|+|.+++++.+|+.++++.+|+|++||||||||||||++++++|.++|++|++...
T Consensus 399 F~~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~HtnWtg~gg 478 (487)
T KOG2653|consen 399 FAKAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHTNWTGHGG 478 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeeeeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCccccC
Q psy9637 337 NSIAAKV 343 (490)
Q Consensus 337 ~~~~a~~ 343 (490)
++++.+|
T Consensus 479 ~~s~~~y 485 (487)
T KOG2653|consen 479 NVSSSTY 485 (487)
T ss_pred ccccccc
Confidence 7766554
No 24
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.98 E-value=5e-33 Score=255.51 Aligned_cols=159 Identities=29% Similarity=0.475 Sum_probs=142.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|++|||||+|.||.+||+||+++||+|++|||++++.+++.+.+. +.++|+.|++++ +|+||+|||++.+++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~-----~~~~s~~e~~~~---~dvvi~~v~~~~~v~ 72 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGA-----EVADSPAEAAEQ---ADVVILCVPDDDAVE 72 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTE-----EEESSHHHHHHH---BSEEEE-SSSHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhh-----hhhhhhhhHhhc---ccceEeecccchhhh
Confidence 469999999999999999999999999999999999999998764 479999999998 899999999999999
Q ss_pred HHHHh--hcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHh
Q psy9637 84 DFIDK--LVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 84 ~vl~~--l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~ 160 (490)
+++.+ +++.+.+|++|||+||+.|..++++.+.+.++|++|+|+||+||+.++++|+ ++|+||+++++++++|+|+.
T Consensus 73 ~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~ 152 (163)
T PF03446_consen 73 AVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEA 152 (163)
T ss_dssp HHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHH
T ss_pred hhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHH
Confidence 99988 9999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hCCceee-CCC
Q psy9637 161 LNPSFET-SAP 170 (490)
Q Consensus 161 l~~~~~~-~g~ 170 (490)
++.+++| +||
T Consensus 153 ~~~~v~~~~G~ 163 (163)
T PF03446_consen 153 MGKNVYHYVGP 163 (163)
T ss_dssp HEEEEEEE-ES
T ss_pred HhCCceeeeCc
Confidence 9999884 465
No 25
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.97 E-value=1.9e-31 Score=280.39 Aligned_cols=184 Identities=54% Similarity=0.938 Sum_probs=164.9
Q ss_pred chHHHHHHHHHhhC--CceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Q psy9637 149 AAWPALKPIFQKLN--PSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRG 226 (490)
Q Consensus 149 ~a~~~v~~ll~~l~--~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~ 226 (490)
+++.++.+.++... ....+.|+.+...+++.+++|.++|+++++++++|+|+|.+.++++++++|++|+.+++++||+
T Consensus 272 AvfaR~~S~~k~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~ 351 (459)
T PRK09287 272 AVFARYLSSLKDQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRG 351 (459)
T ss_pred HHHHHhccccHHHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCC
Confidence 45556666655542 1233456543212345799999999999999999999999999999999999999999999999
Q ss_pred ccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHH
Q psy9637 227 GCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQ 306 (490)
Q Consensus 227 g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~ 306 (490)
||||||+||+.+.++|.++|.+.|+++++.|...++.....||.++..|.+.|+|+|.+++++.||+.+++..+|+|++|
T Consensus 352 GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~anliq 431 (459)
T PRK09287 352 GCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPANLIQ 431 (459)
T ss_pred CCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccccCCCCceeecccC
Q psy9637 307 AQRDYFGAHTYELLAAPGKFVHTNWTG 333 (490)
Q Consensus 307 a~rd~fgah~~~r~~~~~~~~h~~w~~ 333 (490)
+||||||+|+|+|+|++| +||++|++
T Consensus 432 aqRd~FGaH~~~r~d~~g-~~h~~w~~ 457 (459)
T PRK09287 432 AQRDYFGAHTYERTDKEG-FFHTEWSE 457 (459)
T ss_pred HHHhHhCCCCcccCCCCC-CCcccCCC
Confidence 999999999999999987 79999975
No 26
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.97 E-value=3.2e-30 Score=270.59 Aligned_cols=271 Identities=15% Similarity=0.161 Sum_probs=227.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc---------------CCCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA---------------KGTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~---------------~~~~i~~~~s~~e~v~~l~~~ 69 (490)
|+|+|||+|.||.+||.+|+++||+|++||+++++++.+.+... ...++..++++.++++. +
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~---a 77 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRD---A 77 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhh---C
Confidence 48999999999999999999999999999999999988764210 01235567788887776 8
Q ss_pred cEEEEecCCCch---------HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc--ccc-ccccCCCCCccccc
Q psy9637 70 RRVMMLVKAGSA---------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK--GLL-YVGCGVSGGEDGAR 137 (490)
Q Consensus 70 dvIil~vp~~~~---------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~--gi~-~ld~~vsGg~~~a~ 137 (490)
|+||+|||++.. +.++++++.+.+++|++||++||..|.++.+..+.+.++ |.. ++|+|++++|+.+.
T Consensus 78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR 157 (411)
T ss_pred CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence 999999998743 778888898999999999999999999988887655554 554 78999999999998
Q ss_pred cCC---------ccCCCCCcchHHHHHHHHHhhC-CceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 138 YGP---------SLMPGGNPAAWPALKPIFQKLN-PSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQA 207 (490)
Q Consensus 138 ~G~---------~im~GG~~~a~~~v~~ll~~l~-~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a 207 (490)
.|. .+++|++++++++++++|+.++ ..++++++.+ .++++|+++|++.+.++++++|+..+++++
T Consensus 158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~ 232 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIE-----TAEMIKLAENTFRAVKIAFANELARICEAL 232 (411)
T ss_pred CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887 4789999999999999999998 5677777764 689999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHH
Q psy9637 208 AEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287 (490)
Q Consensus 208 ~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~a 287 (490)
|+|.+++.++++.+ +++....+.|+|.....++.||++.+++.|++.|+++|++++
T Consensus 233 ------GiD~~~v~~~~~~~------------------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~ 288 (411)
T TIGR03026 233 ------GIDVYEVIEAAGTD------------------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEA 288 (411)
T ss_pred ------CCCHHHHHHHhCCC------------------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHH
Confidence 99999999998644 334455677887667788999999999999999999999999
Q ss_pred HHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 288 ALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 288 a~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
+.+.-+ ..+..+++.+.+.+
T Consensus 289 ~~~~N~-----~~~~~~~~~~~~~l 308 (411)
T TIGR03026 289 AREIND-----SQPDYVVEKILDLL 308 (411)
T ss_pred HHHHHH-----HhHHHHHHHHHHHh
Confidence 988754 44556666666655
No 27
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.97 E-value=7.3e-31 Score=277.12 Aligned_cols=185 Identities=60% Similarity=1.024 Sum_probs=164.2
Q ss_pred chHHHHHHHHHhhCC--ceeeCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q psy9637 149 AAWPALKPIFQKLNP--SFETSAPTPK-PQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWR 225 (490)
Q Consensus 149 ~a~~~v~~ll~~l~~--~~~~~g~~g~-~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~ 225 (490)
+++++..+.++.... ...+.||.+. ..+++.+++|.++|+++++++++|+|+|.+.++++++|+|++|+.+++++||
T Consensus 279 av~~R~~S~~k~~r~~~~~~~~gp~~~~~~~~~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr 358 (467)
T TIGR00873 279 SVFARYLSSLKEERVAASKVLSGPLAPEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWR 358 (467)
T ss_pred HHHHHhccccHHHHHHhhcccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC
Confidence 455566665555422 2233455321 1134579999999999999999999999999999999999999999999999
Q ss_pred cccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhH
Q psy9637 226 GGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLL 305 (490)
Q Consensus 226 ~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~ 305 (490)
+||||||+||+.+.++|.+++.+.|+++++.|...++.....||.++..|.+.|+|+|.+++++.||+.+++..+|+|++
T Consensus 359 ~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~~nli 438 (467)
T TIGR00873 359 GGCIIRSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLPANLL 438 (467)
T ss_pred CCceeeHhHHHHHHHHHHcCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCC-ceeecccC
Q psy9637 306 QAQRDYFGAHTYELLAAPGK-FVHTNWTG 333 (490)
Q Consensus 306 ~a~rd~fgah~~~r~~~~~~-~~h~~w~~ 333 (490)
|+||||||+|+|+|+|++|+ .||++|++
T Consensus 439 qaqRd~FGaH~~~r~d~~g~~~~h~~w~~ 467 (467)
T TIGR00873 439 QAQRDYFGAHTYERTDKPRGEFFHTNWTG 467 (467)
T ss_pred HHHHHHhccccccccCCCCCCccCCCCCC
Confidence 99999999999999999874 89999963
No 28
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.97 E-value=4e-30 Score=271.46 Aligned_cols=155 Identities=60% Similarity=1.078 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChh
Q psy9637 177 DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPF 256 (490)
Q Consensus 177 ~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~ 256 (490)
.+.+++|.++|+++++++++|+|+|.+.++++++|+|++|+.+++++||+||||||+||+.+.++|.++|.+.|+++.|.
T Consensus 316 ~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~ 395 (470)
T PTZ00142 316 DKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPD 395 (470)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeeccc
Q psy9637 257 FKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332 (490)
Q Consensus 257 f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~ 332 (490)
|...+......||.++..|.+.|+|+|.+++++.||+.+++..+|+|++|+||||||+|+|+|+|++| .||++|+
T Consensus 396 ~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g-~~h~~w~ 470 (470)
T PTZ00142 396 FNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPG-AFHTNWE 470 (470)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhCCCCcccCCCCC-CCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887 6999995
No 29
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.96 E-value=1e-28 Score=261.13 Aligned_cols=158 Identities=55% Similarity=0.993 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChh
Q psy9637 177 DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPF 256 (490)
Q Consensus 177 ~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~ 256 (490)
++..+++.+.++++++++++|+|+|.+.++++++++|++|+.+++++||+||||||+||+.+.++|.++|.+.++++.+.
T Consensus 325 ~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~ 404 (493)
T PLN02350 325 DKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLLVDPE 404 (493)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeecccCCC
Q psy9637 257 FKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHG 335 (490)
Q Consensus 257 f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~~~~ 335 (490)
|...+......+|.++..|.+.|+|+|.+++++.||+.+++..+|.|++|+||||||+|+|+|+|++| +||++|++.+
T Consensus 405 ~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g-~~h~~w~~~~ 482 (493)
T PLN02350 405 FAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPG-SFHTEWTKLA 482 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccHHHHHHHHHHhCCCceeeCCCCC-CCcCCchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 6999999654
No 30
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.94 E-value=3.9e-26 Score=239.30 Aligned_cols=268 Identities=15% Similarity=0.133 Sum_probs=203.9
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHh------------hCCC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVK------------NLKK 68 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~------------~l~~ 68 (490)
|. +|+|+|||+|.||.+||.+|+++||+|++||+++++++.+...... + ....+++++. .++.
T Consensus 1 m~-~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~---~-~e~~l~~~l~~~~~~g~l~~~~~~~~ 75 (415)
T PRK11064 1 MS-FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIH---I-VEPDLDMVVKTAVEGGYLRATTTPEP 75 (415)
T ss_pred CC-ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCC---c-CCCCHHHHHHHHhhcCceeeeccccc
Confidence 65 5799999999999999999999999999999999999986532111 0 1122333221 1234
Q ss_pred CcEEEEecCCC---------chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc--------------c
Q psy9637 69 PRRVMMLVKAG---------SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY--------------V 125 (490)
Q Consensus 69 ~dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~--------------l 125 (490)
+|+||+|||++ ..+.++++++.+.+++|++||+.||+.|..+++....+.+++..+ +
T Consensus 76 aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~ 155 (415)
T PRK11064 76 ADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIA 155 (415)
T ss_pred CCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEE
Confidence 89999999997 578888899999999999999999999999999888777765443 4
Q ss_pred ccC--CCCCccccccCC-ccCCCC-CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 126 GCG--VSGGEDGARYGP-SLMPGG-NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGF 201 (490)
Q Consensus 126 d~~--vsGg~~~a~~G~-~im~GG-~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~ 201 (490)
++| +.+|...+..+. ..|+|| +++.+++++++|+.++..++++++.+ .|+++|+++|++.+.+++.++|+.
T Consensus 156 ~~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~-----~Ae~~Kl~~N~~~a~~ia~~nE~~ 230 (415)
T PRK11064 156 YCPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSR-----TAEMCKLTENSFRDVNIAFANELS 230 (415)
T ss_pred ECCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 455554444444 578899 88999999999999998777777664 789999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy9637 202 MLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIP 281 (490)
Q Consensus 202 ~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~ 281 (490)
.+|++. |+|..++.+...... ++ ..+.|+++..-.++.||...+.. ..+..
T Consensus 231 ~lae~~------GiD~~~v~~~~~~~~------------------ri--~~l~pG~G~GG~ClpkD~~~L~~---~~~~~ 281 (415)
T PRK11064 231 LICADQ------GINVWELIRLANRHP------------------RV--NILQPGPGVGGHCIAVDPWFIVA---QNPQQ 281 (415)
T ss_pred HHHHHh------CCCHHHHHHHhccCC------------------Cc--ccCCCCCCCCCccccccHHHHHH---hcCCc
Confidence 999999 999999999875432 22 13455554455678999988754 56667
Q ss_pred chHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 282 TPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 282 ~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
.++++++.+. ++..+...++.+.+.+
T Consensus 282 ~~l~~~a~~~-----N~~~~~~v~~~~~~~l 307 (415)
T PRK11064 282 ARLIRTAREV-----NDGKPHWVIDQVKAAV 307 (415)
T ss_pred cHHHHHHHHH-----HHHhHHHHHHHHHHHH
Confidence 8888888765 4444555555554443
No 31
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.94 E-value=1e-25 Score=236.28 Aligned_cols=269 Identities=11% Similarity=0.119 Sum_probs=207.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC------------CCCeeccCCHHHHHhhCCCCc
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK------------GTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~------------~~~i~~~~s~~e~v~~l~~~d 70 (490)
..|||||||+|.||.+||.+|++ ||+|++||+++++++.+. .|.. ..++..+++. +.++. +|
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~-~~~~~---ad 78 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEI-EKIKE---CN 78 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCH-HHHcC---CC
Confidence 35799999999999999999887 699999999999999988 3332 0122333333 44555 89
Q ss_pred EEEEecCCC---------chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH--ccccccc--------cCCCC
Q psy9637 71 RVMMLVKAG---------SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA--KGLLYVG--------CGVSG 131 (490)
Q Consensus 71 vIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~--~gi~~ld--------~~vsG 131 (490)
++|+|||++ ..+....+++.+.+++|++||+.||+.|.+++++.+...+ .|..+.+ .++.+
T Consensus 79 vvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~ 158 (425)
T PRK15182 79 FYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINP 158 (425)
T ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCC
Confidence 999999987 2444455788899999999999999999999987644443 3777776 45666
Q ss_pred CccccccCC--ccCCCCCcchHHHHHHHHHhhC-CceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 132 GEDGARYGP--SLMPGGNPAAWPALKPIFQKLN-PSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAA 208 (490)
Q Consensus 132 g~~~a~~G~--~im~GG~~~a~~~v~~ll~~l~-~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~ 208 (490)
|...+..+. .++.|++++..+.++++++.+. ...++++..+ .|+++|+++|++.+.+++.++|+..+|++.
T Consensus 159 G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~-----~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~- 232 (425)
T PRK15182 159 GDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIK-----VAEAAKVIENTQRDLNIALVNELAIIFNRL- 232 (425)
T ss_pred CcccccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 666555544 4667777788889999999986 3455555554 789999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHH
Q psy9637 209 EIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATA 288 (490)
Q Consensus 209 ~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa 288 (490)
|+|..+++++.... +.+. .+.|++ ..-.+..||...++..+++.|+.+++++++
T Consensus 233 -----GiD~~~v~~a~~~~------------------~~~~--~~~pG~-vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a 286 (425)
T PRK15182 233 -----NIDTEAVLRAAGSK------------------WNFL--PFRPGL-VGGHCIGVDPYYLTHKSQGIGYYPEIILAG 286 (425)
T ss_pred -----CcCHHHHHHHhcCC------------------CCcc--cCCCCc-cccccccccHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999985322 1111 135664 455679999999999999999999999998
Q ss_pred HHHHHHHHhCCChhhhHHHHHHhhcc
Q psy9637 289 LAFYDGYRSKRLPANLLQAQRDYFGA 314 (490)
Q Consensus 289 ~~~~~~~~~~g~~~~~~~a~rd~fga 314 (490)
.+. ++..+...++.+.+.++.
T Consensus 287 ~~i-----N~~~~~~v~~~~~~~l~~ 307 (425)
T PRK15182 287 RRL-----NDNMGNYVSEQLIKAMIK 307 (425)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHh
Confidence 765 456677777777777653
No 32
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.93 E-value=5.7e-25 Score=228.02 Aligned_cols=259 Identities=12% Similarity=0.112 Sum_probs=202.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc-------------CCCCeeccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA-------------KGTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~-------------~~~~i~~~~s~~e~v~~l~~~dv 71 (490)
|||+|||+|.||.++|..|+ .||+|++||+++++++.+.+.-. ...++....++.+++.. +|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~---ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD---ADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC---CCE
Confidence 48999999999999997777 59999999999999998875210 01234444556777666 899
Q ss_pred EEEecCCC----------chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-
Q psy9637 72 VMMLVKAG----------SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP- 140 (490)
Q Consensus 72 Iil~vp~~----------~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~- 140 (490)
||+|||++ ..++++++++.+ +++|++||+.||+.|.+++++.+.+.+.++.| +|+.++.|.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a 148 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKA 148 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcc
Confidence 99999987 577888888877 68999999999999999999988777666655 556666665
Q ss_pred --------ccCCCCCcchHHHHHHHHHh--hCCcee-eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 141 --------SLMPGGNPAAWPALKPIFQK--LNPSFE-TSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAE 209 (490)
Q Consensus 141 --------~im~GG~~~a~~~v~~ll~~--l~~~~~-~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~ 209 (490)
.+|+|++++..+++.++|.. ++..+. ++++.+ .|+++|+++|++.+.+++.++|+..+|++.
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~-- 221 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDST-----EAEAIKLFANTYLAMRVAYFNELDSYAESL-- 221 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 47889999999999999965 454433 455543 789999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHH
Q psy9637 210 IHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATAL 289 (490)
Q Consensus 210 ~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~ 289 (490)
|+|..++.+++.... ++....+.|+++..-.++.||...+...+ .++++++++++.
T Consensus 222 ----GiD~~eV~~a~~~d~------------------ri~~~~l~pG~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~ 277 (388)
T PRK15057 222 ----GLNTRQIIEGVCLDP------------------RIGNHYNNPSFGYGGYCLPKDTKQLLANY--QSVPNNLISAIV 277 (388)
T ss_pred ----CcCHHHHHHHhcCCC------------------CCCCccCCCCCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHH
Confidence 999999999986443 23333345665555667999999987655 567888888887
Q ss_pred HHHHHHHhCCChhhhHHHHHHh
Q psy9637 290 AFYDGYRSKRLPANLLQAQRDY 311 (490)
Q Consensus 290 ~~~~~~~~~g~~~~~~~a~rd~ 311 (490)
+. ++..+..+++.+.+.
T Consensus 278 ~~-----N~~~~~~~~~~~~~~ 294 (388)
T PRK15057 278 DA-----NRTRKDFIADAILSR 294 (388)
T ss_pred HH-----HHHhHHHHHHHHHHh
Confidence 65 555667777766664
No 33
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.91 E-value=6.6e-25 Score=223.77 Aligned_cols=272 Identities=12% Similarity=0.026 Sum_probs=195.4
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------CCCeeccCCHHHHHhhCCCCcE
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------GTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------~~~i~~~~s~~e~v~~l~~~dv 71 (490)
|+.+|||+|||+|.||..||.+|+++||+|++|+|++++.+.+.+.+.. ..++..+++++++++. +|+
T Consensus 1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~---aD~ 77 (328)
T PRK14618 1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG---ADF 77 (328)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC---CCE
Confidence 7778899999999999999999999999999999999998888764211 1124467788887765 899
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCC-ChHH--HHHHHHHHHH---ccccccccCCCCCccccccCC-ccCC
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS-EYQD--TDRRSKALEA---KGLLYVGCGVSGGEDGARYGP-SLMP 144 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~-~~~~--~~~~~~~l~~---~gi~~ld~~vsGg~~~a~~G~-~im~ 144 (490)
||+|||+. .++++++. ++++.++|+++|+ .+.+ .....+.+.+ +++.+++.|......+...+. .+|.
T Consensus 78 Vi~~v~~~-~~~~v~~~----l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~ 152 (328)
T PRK14618 78 AVVAVPSK-ALRETLAG----LPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVA 152 (328)
T ss_pred EEEECchH-HHHHHHHh----cCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEE
Confidence 99999996 67777644 5577899999995 4332 3444455544 566555555433333333345 7789
Q ss_pred CCCcchHHHHHHHHHhhCCceeeCCC-----CCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9637 145 GGNPAAWPALKPIFQKLNPSFETSAP-----TPK--------PQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIH 211 (490)
Q Consensus 145 GG~~~a~~~v~~ll~~l~~~~~~~g~-----~g~--------~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~ 211 (490)
|++++.+++++++|+..+.+++.... .+. ..| .+..+|+.+|+..+....+++|++.+++++
T Consensus 153 ~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G-~~~~~k~~~n~~~~~~~~~~~E~~~la~~~---- 227 (328)
T PRK14618 153 SPEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAG-MVDGLKLGDNAKAALITRGLREMVRFGVAL---- 227 (328)
T ss_pred eCCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHH-HHHHhCCCccHHHHHHHHHHHHHHHHHHHh----
Confidence 99999999999999998877763211 110 011 456789999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhcc---cchhhHhHhHhHHhhccCcccccc---c-CChhHHHHHHHHHHHHHHHHHHHHHcCCCchH
Q psy9637 212 GWKLNYGGIALMWRGG---CIIRSVFLGNIKAAFDKNPALSNL---L-LDPFFKDAIHATQSSWRAVVSQSALLGIPTPA 284 (490)
Q Consensus 212 ~~Gld~~~v~~i~~~g---~~~~s~~l~~i~~~~~~~~~~~~~---~-~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~ 284 (490)
|+|+++++++...| ....|+..+.... ...+.+. . +.+. +.+....||++.+.+.+++.++++|+
T Consensus 228 --G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~----g~~~~~g~~~~~~~~~--~~~~~g~kd~~~~~~la~~~~~~~Pl 299 (328)
T PRK14618 228 --GAEEATFYGLSGLGDLIATATSPHSRNRAA----GEAIVRGVDREHLEAG--GKVVEGLYTVKALDAWAKAHGHDLPI 299 (328)
T ss_pred --CCCccchhcCcchhheeeEeccCCCccHHH----HHHHhCCCCHHHHHHc--CCEEecHHHHHHHHHHHHHhCCCCCH
Confidence 99999999997653 1122333332110 0011121 1 1122 24667889999999999999999999
Q ss_pred HHHHHHHHH
Q psy9637 285 FATALAFYD 293 (490)
Q Consensus 285 ~~aa~~~~~ 293 (490)
++++++++.
T Consensus 300 ~~~~~~~~~ 308 (328)
T PRK14618 300 VEAVARVAR 308 (328)
T ss_pred HHHHHHHHh
Confidence 999988873
No 34
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.91 E-value=5e-24 Score=216.62 Aligned_cols=275 Identities=14% Similarity=0.103 Sum_probs=191.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCC---------CCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKG---------TNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~---------~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
||||+|||+|.||..||.+|+++||+|++|||++++++.+.+.+... .++..+.+++++++. +|+||+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD---ADLILV 77 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC---CCEEEE
Confidence 36899999999999999999999999999999999998887753211 124456778777766 899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCChH-HHHHHHHHHHHc-----cccccccCCCCCccccccCC-ccCCCCC
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQ-DTDRRSKALEAK-----GLLYVGCGVSGGEDGARYGP-SLMPGGN 147 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~-~~~~~~~~l~~~-----gi~~ld~~vsGg~~~a~~G~-~im~GG~ 147 (490)
|||+ ..++++++++.+.+.++.+||+++|+... ...+..+.+.+. ...+++.|..+....+.... .++.|++
T Consensus 78 ~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~ 156 (325)
T PRK00094 78 AVPS-QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTD 156 (325)
T ss_pred eCCH-HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCC
Confidence 9999 58999999999998899999999855443 333333444443 23344555443333333334 5567778
Q ss_pred cchHHHHHHHHHhhCCceeeCCCC-CCCC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9637 148 PAAWPALKPIFQKLNPSFETSAPT-PKPQ-----------RDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKL 215 (490)
Q Consensus 148 ~~a~~~v~~ll~~l~~~~~~~g~~-g~~~-----------g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gl 215 (490)
.+.++++.++|+..+.++.+.... +..- ...+..+|+.+|.+.+....+++|++.+++++ |+
T Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~------G~ 230 (325)
T PRK00094 157 EELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVAL------GA 230 (325)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHh------CC
Confidence 899999999999888766554332 1000 01345578889999999999999999999999 99
Q ss_pred CHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCC-hhHHH------HHHHHHHHHHHHHHHHHHcCCCchHHHHH
Q psy9637 216 NYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLD-PFFKD------AIHATQSSWRAVVSQSALLGIPTPAFATA 288 (490)
Q Consensus 216 d~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~-~~f~~------~l~~~~kDl~~~~~~A~~~gv~~P~~~aa 288 (490)
|++.+.++...|.. .....+...++......+.. ..+.. .+....||++.+++.++++|+++|+++++
T Consensus 231 d~~~~~~~~~~~~~-----~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~P~~~~~ 305 (325)
T PRK00094 231 NPETFLGLAGLGDL-----VLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAVYELAKKLGVEMPITEAV 305 (325)
T ss_pred ChhhhhcccHhhhh-----hhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 99999887543321 11110101111110001100 00111 23456899999999999999999999999
Q ss_pred HHHHH
Q psy9637 289 LAFYD 293 (490)
Q Consensus 289 ~~~~~ 293 (490)
++.|.
T Consensus 306 ~~~~~ 310 (325)
T PRK00094 306 YAVLY 310 (325)
T ss_pred HHHHc
Confidence 98874
No 35
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.89 E-value=1.5e-22 Score=204.70 Aligned_cols=243 Identities=13% Similarity=0.109 Sum_probs=179.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
..|||+|||+|.||.+||.+|.++||+|++|||++. .++++++++ +|+||+++|+ .++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~------------------~~~~~~~~~---advvi~~vp~-~~~ 60 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG------------------LSLAAVLAD---ADVIVSAVSM-KGV 60 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC------------------CCHHHHHhc---CCEEEEECCh-HHH
Confidence 457999999999999999999999999999999842 466777776 8999999999 489
Q ss_pred HHHHHhhccc-CCCCCEEEcCCCC-ChHHHHHHHHHHHHccccccccCCC--CCcccccc---C--C-ccCCCCCcchHH
Q psy9637 83 DDFIDKLVPL-LEKGDIIIDGGNS-EYQDTDRRSKALEAKGLLYVGCGVS--GGEDGARY---G--P-SLMPGGNPAAWP 152 (490)
Q Consensus 83 ~~vl~~l~~~-l~~g~iiId~s~~-~~~~~~~~~~~l~~~gi~~ld~~vs--Gg~~~a~~---G--~-~im~GG~~~a~~ 152 (490)
+++++.+.+. +.++.+||++++. .|.......+.+. .+|.+.|+. +|+..+.+ + . .+++|++.++++
T Consensus 61 ~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~---~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~ 137 (308)
T PRK14619 61 RPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQ---AAFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAE 137 (308)
T ss_pred HHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHH---HHcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHH
Confidence 9999888774 7889999999874 3333332333332 246678874 55554422 2 3 678899999999
Q ss_pred HHHHHHHhhCCceeeCCCC-CCCCCCHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy9637 153 ALKPIFQKLNPSFETSAPT-PKPQRDKKEF--------------LENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217 (490)
Q Consensus 153 ~v~~ll~~l~~~~~~~g~~-g~~~g~~a~~--------------~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~ 217 (490)
+++++|+..+.++++.++. |. ..+.. +|+.+|...+....++.|++.+++++ |+++
T Consensus 138 ~v~~ll~~~~~~~~~~~d~~G~---~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~------G~~~ 208 (308)
T PRK14619 138 TVQQIFSSERFRVYTNSDPLGT---ELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHL------GAQT 208 (308)
T ss_pred HHHHHhCCCcEEEEecCCchhh---hhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHh------CCCc
Confidence 9999999988777765542 10 12223 34888999999999999999999999 9999
Q ss_pred HHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHH----------------HHHHHHHHHHHHHcCCC
Q psy9637 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHAT----------------QSSWRAVVSQSALLGIP 281 (490)
Q Consensus 218 ~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~----------------~kDl~~~~~~A~~~gv~ 281 (490)
+.++++- +++.+.. . .+.+.++.+.++| .+... .||++.+++++++.|++
T Consensus 209 ~t~~~~~---g~gd~~~--t-------~~~~~~rn~~~g~--~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~ 274 (308)
T PRK14619 209 ETFYGLS---GLGDLLA--T-------CTSPLSRNYQVGY--GLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIA 274 (308)
T ss_pred ccccccc---chhhhhe--e-------ecCCCCccHHHHH--HHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCC
Confidence 9998852 2222211 1 1111222222222 33343 89999999999999999
Q ss_pred chHHHHHHHHHH
Q psy9637 282 TPAFATALAFYD 293 (490)
Q Consensus 282 ~P~~~aa~~~~~ 293 (490)
+|++.+++++|.
T Consensus 275 ~Pl~~~v~~i~~ 286 (308)
T PRK14619 275 VPITEQVYRLLQ 286 (308)
T ss_pred CCHHHHHHHHHc
Confidence 999999999884
No 36
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=1e-20 Score=190.30 Aligned_cols=270 Identities=14% Similarity=0.143 Sum_probs=217.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc---------------CCCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA---------------KGTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~---------------~~~~i~~~~s~~e~v~~l~~~ 69 (490)
|||.|||.|.+|...+..|++.||+|+.+|.+++|++.+.+... ...++.++++.+++++. +
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~---a 77 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKD---A 77 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhc---C
Confidence 58999999999999999999999999999999999987764211 13458889999998887 9
Q ss_pred cEEEEecCCCc---------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC
Q psy9637 70 RRVMMLVKAGS---------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP 140 (490)
Q Consensus 70 dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~ 140 (490)
|++|++||++. .++.+++.+.+.++...+||.-||+.+.++.+..+.+.+..-.- |..|.-.|+-.++|.
T Consensus 78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~ 156 (414)
T COG1004 78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGS 156 (414)
T ss_pred CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcc
Confidence 99999998874 37788899999998889999999999999988887665543211 566666777777775
Q ss_pred ---------ccCCCCCcc-hHHHHHHHHHhh---CCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 141 ---------SLMPGGNPA-AWPALKPIFQKL---NPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQA 207 (490)
Q Consensus 141 ---------~im~GG~~~-a~~~v~~ll~~l---~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a 207 (490)
-+++|.+.+ +.+.++++++.+ ..+++.++.. .|+++|+..|++++..+..++|.-.+|++.
T Consensus 157 Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~------~AE~IKyaaNafLAtKIsFiNEia~ice~~ 230 (414)
T COG1004 157 AVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLR------EAELIKYAANAFLATKISFINEIANICEKV 230 (414)
T ss_pred hhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356787665 578888888776 4456665554 689999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHH
Q psy9637 208 AEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287 (490)
Q Consensus 208 ~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~a 287 (490)
|+|..++.+.+..... +.+..+.++|+..-.++.||++.++..|+++|.+.+++++
T Consensus 231 ------g~D~~~V~~gIGlD~R------------------IG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~a 286 (414)
T COG1004 231 ------GADVKQVAEGIGLDPR------------------IGNHFLNAGFGYGGSCFPKDTKALIANAEELGYDPNLLEA 286 (414)
T ss_pred ------CCCHHHHHHHcCCCch------------------hhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHH
Confidence 9999999998765443 4444455666556667999999999999999999999999
Q ss_pred HHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 288 ALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 288 a~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
+.+. ++..+..+++.+.+.++
T Consensus 287 vv~v-----N~~qk~~~~~~i~~~~~ 307 (414)
T COG1004 287 VVEV-----NERRKDKLAEKILNHLG 307 (414)
T ss_pred HHHH-----HHHHHHHHHHHHHHhcC
Confidence 9765 34445567777777766
No 37
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.87 E-value=1.7e-20 Score=189.66 Aligned_cols=270 Identities=16% Similarity=0.083 Sum_probs=190.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-----------HcccC--------CCCeeccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL-----------ANEAK--------GTNIIGAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~~--------~~~i~~~~s~~e~v~ 64 (490)
+++|+|||+|.||.+||.+|+++||+|++||++++..+... +.+.. ..++..+.+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 46899999999999999999999999999999998777532 22211 112456788888776
Q ss_pred hCCCCcEEEEecCCCchHHHH-HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccC
Q psy9637 65 NLKKPRRVMMLVKAGSAVDDF-IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLM 143 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im 143 (490)
. +|+|+.|+|...+++.. +..+.+.. +++++|.++|+ .....+..+.+...+..+.+.|+++.... ....|
T Consensus 82 ~---ad~Vi~avpe~~~~k~~~~~~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~~---~lvei 153 (308)
T PRK06129 82 D---ADYVQESAPENLELKRALFAELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYLI---PVVEV 153 (308)
T ss_pred C---CCEEEECCcCCHHHHHHHHHHHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCcccC---ceEEE
Confidence 6 89999999997655554 45555544 55666665555 34556666666667788899999753211 12445
Q ss_pred CC---CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy9637 144 PG---GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGI 220 (490)
Q Consensus 144 ~G---G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v 220 (490)
++ ++++++++++++++.+|.+++++++.+ .| . ++||+ ..+.++|++.++++. |+|++++
T Consensus 154 v~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~--~G---~---i~nrl----~~a~~~EA~~l~~~g------~~~~~~i 215 (308)
T PRK06129 154 VPAPWTAPATLARAEALYRAAGQSPVRLRREI--DG---F---VLNRL----QGALLREAFRLVADG------VASVDDI 215 (308)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCEEEEecCCC--cc---H---HHHHH----HHHHHHHHHHHHHcC------CCCHHHH
Confidence 64 889999999999999999999998754 22 2 44553 447999999999998 9999999
Q ss_pred HHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCC
Q psy9637 221 ALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRL 300 (490)
Q Consensus 221 ~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~ 300 (490)
.++++.|... ++.+ ..|.....++.+.| ....+.||.++..+.+.+.+.|.|++..-....-.....-+
T Consensus 216 d~~~~~~~g~-~~~~--------~gp~~~~d~~~~~g--~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (308)
T PRK06129 216 DAVIRDGLGL-RWSF--------MGPFETIDLNAPGG--VADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAAL 284 (308)
T ss_pred HHHHHhccCC-CccC--------cCHHHHHhcccccc--HHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHc
Confidence 9999876532 2111 12222222344544 56678999999999999999999998766654334443333
Q ss_pred h---hhhHHHHHH
Q psy9637 301 P---ANLLQAQRD 310 (490)
Q Consensus 301 ~---~~~~~a~rd 310 (490)
+ -+..+..||
T Consensus 285 ~~~~~~~~~~~~~ 297 (308)
T PRK06129 285 PLDQLAARQAWRD 297 (308)
T ss_pred CCCCHHHHHHHHH
Confidence 3 234455555
No 38
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.86 E-value=6.4e-20 Score=194.20 Aligned_cols=272 Identities=15% Similarity=0.143 Sum_probs=203.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcccC--------------CCCeeccCCHHHHHhhCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEAK--------------GTNIIGAHSLEELVKNLK 67 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~--------------~~~i~~~~s~~e~v~~l~ 67 (490)
||+|+|||+|.+|..+|..|+++ ||+|++||+++++++.+.+.... +.++..++++.+.+..
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~-- 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE-- 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc--
Confidence 47999999999999999999988 48899999999999987653211 1235667777776666
Q ss_pred CCcEEEEecCCCc--------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc--cc--cccccCC
Q psy9637 68 KPRRVMMLVKAGS--------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK--GL--LYVGCGV 129 (490)
Q Consensus 68 ~~dvIil~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~--gi--~~ld~~v 129 (490)
+|+||+|||++. .++++++.+.+.++++++||--||..+.++.+..+.+.+. |. +..-+|-
T Consensus 79 -advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 79 -ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred -CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 899999997553 4677889999999999999999999999998888777653 42 2333443
Q ss_pred CCCcccccc---CC-ccCCCCC-c----chHHHHHHHHHhhCC--ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9637 130 SGGEDGARY---GP-SLMPGGN-P----AAWPALKPIFQKLNP--SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYA 198 (490)
Q Consensus 130 sGg~~~a~~---G~-~im~GG~-~----~a~~~v~~ll~~l~~--~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~a 198 (490)
.=-+-.+.. -+ .+++||. + ++.++++.+++.+.. .+..+.. ..|+++|++.|++.+.+++..+
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~------~~AE~~K~~eN~~ra~~Iaf~N 231 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNL------WSAELSKLAANAFLAQRISSVN 231 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211 12 4566885 2 357788888888752 3333333 3799999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHc
Q psy9637 199 QGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALL 278 (490)
Q Consensus 199 E~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~ 278 (490)
|...+|++. |+|..++.+.+.....+ ....+.|+++..-.++.||...++..+++.
T Consensus 232 Ela~lce~~------giD~~eV~~~~~~d~ri------------------g~~~l~PG~G~GG~ClpkD~~~L~~~a~~~ 287 (473)
T PLN02353 232 AMSALCEAT------GADVSQVSHAVGKDSRI------------------GPKFLNASVGFGGSCFQKDILNLVYICECN 287 (473)
T ss_pred HHHHHHHHh------CCCHHHHHHHhCCCCcC------------------CCCCCCCCCCCCCcchhhhHHHHHHHHHHc
Confidence 999999999 99999999987644322 112334555445567899999999999999
Q ss_pred CCC--chHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 279 GIP--TPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 279 gv~--~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
|++ .+++.++. ..++..+..+++.+.+.+.
T Consensus 288 g~~~~~~l~~~~~-----~iN~~~~~~vv~~~~~~l~ 319 (473)
T PLN02353 288 GLPEVAEYWKQVI-----KMNDYQKSRFVNRVVSSMF 319 (473)
T ss_pred CCchHHHHHHHHH-----HHHHhhHHHHHHHHHHHhh
Confidence 998 78888777 3566777777777766654
No 39
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.86 E-value=1.1e-21 Score=197.44 Aligned_cols=116 Identities=35% Similarity=0.688 Sum_probs=106.5
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHh-hcCCChHHHHHHHHHhccCc-chhHHHHHHHHHhcccCCCCC
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTG-ALGMSHDEMSAVFEDWNKGE-LDSFLIEITKDILKFKDTDGA 426 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~-~~~~~~~~~~~~~~~w~~g~-~~s~l~~~~~~~~~~~~~~~~ 426 (490)
+.|+|+.|+||++|||||+++|++|++++|+|.++++ ++|+ |+.++++.|+.|+ ++||+++++.++++++
T Consensus 158 ~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~l---d~~~~~~i~~~g~~~~s~~l~~~~~~~~~~----- 229 (298)
T TIGR00872 158 YLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDF---DIPEVARVWRRGSVIRSWLLDLTAIAFRES----- 229 (298)
T ss_pred EEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc---CHHHHHHHHcCCchhHhHHHHHHHHHHhcC-----
Confidence 6689999999999999999999999999999999998 3456 6677777899998 7999999999999863
Q ss_pred cchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCc
Q psy9637 427 PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLF 472 (490)
Q Consensus 427 ~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~ 472 (490)
+.++.+.+.+.++||+||+|++|.++|+|+|+|++||+.|+.|..+
T Consensus 230 ~~~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~ 275 (298)
T TIGR00872 230 PDLAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDL 275 (298)
T ss_pred CcHHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4688899999999999999999999999999999999999999887
No 40
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=5.7e-20 Score=184.04 Aligned_cols=266 Identities=17% Similarity=0.220 Sum_probs=204.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc---------------CCCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA---------------KGTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~---------------~~~~i~~~~s~~e~v~~l~~~ 69 (490)
++|||||||.+|.++|..++++|++|++||.++.+++.+..... ...+++.++++.++.. |
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~----~ 85 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKE----C 85 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhccc----C
Confidence 68999999999999999999999999999999999988754111 1245666777777653 8
Q ss_pred cEEEEecCCCc---------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc--cccc-cccCCCCCccccc
Q psy9637 70 RRVMMLVKAGS---------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK--GLLY-VGCGVSGGEDGAR 137 (490)
Q Consensus 70 dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~--gi~~-ld~~vsGg~~~a~ 137 (490)
|++|+|||++- .+.+..+.+.+.|++|++||--||+.|.+|++....+.+. |..| .|..+.-.|+...
T Consensus 86 dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~ 165 (436)
T COG0677 86 DVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVL 165 (436)
T ss_pred CEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccC
Confidence 99999999863 3567778999999999999999999999999999777664 6666 5777777777666
Q ss_pred cCCc--------cCCCC-CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 138 YGPS--------LMPGG-NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAA 208 (490)
Q Consensus 138 ~G~~--------im~GG-~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~ 208 (490)
-|.. =++|| +++..+.+..+++.+-...+.+... ..|+++|++.|.+...+++..+|...++++.
T Consensus 166 PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~-----~tAEm~Kl~EN~fRdVNIALaNElali~~~~- 239 (436)
T COG0677 166 PGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSA-----RTAEMVKLTENTFRDVNIALANELALICNAM- 239 (436)
T ss_pred CCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCCh-----HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh-
Confidence 5542 24566 5677788888888886654443332 3799999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHH
Q psy9637 209 EIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATA 288 (490)
Q Consensus 209 ~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa 288 (490)
|+|..+++++.+.- |. -..+.|+..-.-.+...|--.++..|+++|.++.+++.+
T Consensus 240 -----GIdvwevIeaAnt~------------------P~--~~~~~PGpGvGGHCIpvDP~fl~~ka~~yg~~~rlI~tA 294 (436)
T COG0677 240 -----GIDVWEVIEAANTK------------------PR--VNIFYPGPGVGGHCIPVDPYFLTWKAPEYGLPARLIRTA 294 (436)
T ss_pred -----CCcHHHHHHHhccC------------------Cc--eeecCCCCCCCCcccccCchheeecccccCCchHHHHHH
Confidence 99999998885322 22 233444433344556677777888999999999999988
Q ss_pred HHHHHHHHhCCChhhhHHHHHH
Q psy9637 289 LAFYDGYRSKRLPANLLQAQRD 310 (490)
Q Consensus 289 ~~~~~~~~~~g~~~~~~~a~rd 310 (490)
.++ +.++|...+..+.+
T Consensus 295 reI-----N~~mP~~Vv~~~~~ 311 (436)
T COG0677 295 REI-----NDSMPRHVVDRVKE 311 (436)
T ss_pred HHH-----hccCCHHHHHHHHH
Confidence 765 56667554444443
No 41
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.83 E-value=3.6e-19 Score=181.47 Aligned_cols=201 Identities=8% Similarity=0.025 Sum_probs=157.7
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHHCCCeEEEEeCChH-----HHHHHHHcccCCCCeeccCCH
Q psy9637 5 GDIGLIGLAVM--------------------GQNLILNMNDHGFTVVAYNRTTA-----KVDSFLANEAKGTNIIGAHSL 59 (490)
Q Consensus 5 ~~IgiIGlG~M--------------------G~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~g~~~~~i~~~~s~ 59 (490)
|||.|.|.|+- |.+||.+|+++||+|++|||+++ +.+.+.+.| +..+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~G-----i~~asd~ 75 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAG-----VKVVSDD 75 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCC-----CEEeCCH
Confidence 47888888864 78899999999999999999987 344454444 3457788
Q ss_pred HHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHH-HHHHHHHH----Hcccccc-ccCCCCCc
Q psy9637 60 EELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDT-DRRSKALE----AKGLLYV-GCGVSGGE 133 (490)
Q Consensus 60 ~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~-~~~~~~l~----~~gi~~l-d~~vsGg~ 133 (490)
.+++.. +|+||+|+|++..+++++.++.+.++++.+|||+||+.+... ....+.+. ..|++++ ++++.|++
T Consensus 76 ~eaa~~---ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae 152 (342)
T PRK12557 76 AEAAKH---GEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTP 152 (342)
T ss_pred HHHHhC---CCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccccc
Confidence 888776 899999999976599999999999999999999999987766 33334443 3466665 44455554
Q ss_pred cccc----cCC-ccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 134 DGAR----YGP-SLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAA 208 (490)
Q Consensus 134 ~~a~----~G~-~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~ 208 (490)
.+.. .|+ +...+++++.+++++++|+.++.++++.++ + .+..+|+++|++.+..+++.+|++.+++++
T Consensus 153 ~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~-g-----~~~~vk~~~n~l~av~~a~~aE~~~l~~~~- 225 (342)
T PRK12557 153 QHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPA-D-----VVSAVADMGSLVTAVALSGVLDYYSVGTKI- 225 (342)
T ss_pred cchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCH-H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3321 122 233445899999999999999998877664 3 578999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHh
Q psy9637 209 EIHGWKLNYGGIALMWR 225 (490)
Q Consensus 209 ~~~~~Gld~~~v~~i~~ 225 (490)
|+++.++++-+.
T Consensus 226 -----~~~p~~~~~~~~ 237 (342)
T PRK12557 226 -----IKAPKEMIEKQI 237 (342)
T ss_pred -----CCCHHHHHHHHH
Confidence 999998887753
No 42
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.83 E-value=3e-19 Score=183.02 Aligned_cols=265 Identities=14% Similarity=0.118 Sum_probs=178.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCC------------CCeeccCCHHHHHhhCCCCcE
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKG------------TNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~------------~~i~~~~s~~e~v~~l~~~dv 71 (490)
||||+|||+|.||..+|.+|+++||+|++|||++. .+.+.+.+... .++...+++ +.+. .+|+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~D~ 76 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA---TADL 76 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhcc---CCCE
Confidence 47899999999999999999999999999999753 46665544320 012223444 3333 4899
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc--C---CCCCccccc---cCCccC
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC--G---VSGGEDGAR---YGPSLM 143 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~--~---vsGg~~~a~---~G~~im 143 (490)
||+|||+. .+.++++.+.+.+.++.+||++.|+.. ......+.+.+ ..++++ + +++++..+. .|. +.
T Consensus 77 vil~vk~~-~~~~~~~~l~~~~~~~~iii~~~nG~~-~~~~l~~~~~~--~~~~~g~~~~~~~~~~pg~~~~~~~g~-l~ 151 (341)
T PRK08229 77 VLVTVKSA-ATADAAAALAGHARPGAVVVSFQNGVR-NADVLRAALPG--ATVLAGMVPFNVISRGPGAFHQGTSGA-LA 151 (341)
T ss_pred EEEEecCc-chHHHHHHHHhhCCCCCEEEEeCCCCC-cHHHHHHhCCC--CcEEEEEEEEEEEecCCceEEecCCCc-eE
Confidence 99999985 778899999999999999999988653 33333333322 223333 2 344443333 333 22
Q ss_pred CCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHH--------------------HHHHHHHHHH
Q psy9637 144 PGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASK--------------------IVSYAQGFML 203 (490)
Q Consensus 144 ~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~--------------------~~~~aE~~~l 203 (490)
++ +.+.++++.++|+..+.++.+.++.+ ...+.|++.|++.... ..++.|++.+
T Consensus 152 ~~-~~~~~~~~~~~l~~~g~~~~~~~di~-----~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~v 225 (341)
T PRK08229 152 IE-ASPALRPFAAAFARAGLPLVTHEDMR-----AVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRV 225 (341)
T ss_pred ec-CCchHHHHHHHHHhcCCCceecchhH-----HHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHH
Confidence 22 34667899999999998888888764 5789999999754434 3778999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhccc----chhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHH----------
Q psy9637 204 MRQAAEIHGWKLNYGGIALMWRGGC----IIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWR---------- 269 (490)
Q Consensus 204 a~~a~~~~~~Gld~~~v~~i~~~g~----~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~---------- 269 (490)
+++. |++++.+.++...+. .+.+.+++.+...... .... ....+++|+.
T Consensus 226 a~a~------Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----~~~Sm~~D~~~~r~tEi~~i 288 (341)
T PRK08229 226 LKAA------GIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLA------IDPL-----ARSSMSDDLAAGRATEIDWI 288 (341)
T ss_pred HHHc------CCCccccCCCChhhhhhhhcCChHHHHHHHHHhhc------cCCc-----cCchHHHHHHcCCcchHHHH
Confidence 9999 888765433222110 0122233322111100 0000 1235888998
Q ss_pred --HHHHHHHHcCCCchHHHHHHHHHHHHHhCCCh
Q psy9637 270 --AVVSQSALLGIPTPAFATALAFYDGYRSKRLP 301 (490)
Q Consensus 270 --~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~ 301 (490)
.+++.|+++|+++|..+.+++.++.+...|.+
T Consensus 289 ~G~i~~~a~~~gv~~P~~~~~~~~~~~~~~~~~~ 322 (341)
T PRK08229 289 NGEIVRLAGRLGAPAPVNARLCALVHEAERAGAR 322 (341)
T ss_pred hhHHHHHHHHcCCCCcHHHHHHHHHHHHHhCCCc
Confidence 69999999999999999999999999887665
No 43
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.82 E-value=1.2e-18 Score=172.46 Aligned_cols=255 Identities=18% Similarity=0.133 Sum_probs=168.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF----TVVAY-NRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|||||||+|.||.+|+++|.++|| +|++| ||++++.+.+.+.+. ..+.++.+++++ +|+||+|||+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~-----~~~~~~~e~~~~---aDvVil~v~~- 71 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGV-----KTAASNTEVVKS---SDVIILAVKP- 71 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCC-----EEeCChHHHHhc---CCEEEEEECc-
Confidence 589999999999999999999999 89999 999999888876543 357788888876 8999999976
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc-ccCCCCCccccccCC-ccCCCCCcchHHHHHHH
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV-GCGVSGGEDGARYGP-SLMPGGNPAAWPALKPI 157 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l-d~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~l 157 (490)
..+++++.++.+.+.++++||+..++......+ +.+. .. +++ .+|..+...+..... +...+++++.+++++++
T Consensus 72 ~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~--~~~~-~~-~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 147 (266)
T PLN02688 72 QVVKDVLTELRPLLSKDKLLVSVAAGITLADLQ--EWAG-GR-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATL 147 (266)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHH--HHcC-CC-CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHH
Confidence 689999999988888999988775554333222 2221 11 566 367666554443333 44556688999999999
Q ss_pred HHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhH
Q psy9637 158 FQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGN 237 (490)
Q Consensus 158 l~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~ 237 (490)
|+.+|. ++++++.- -+.....--.-.++.+..+.+++|+ +.+. |+|+++..+++..+......++..
T Consensus 148 ~~~~G~-~~~~~e~~---~d~~~~~~g~g~a~~~~~~~a~~ea---~~~~------Gl~~~~a~~~~~~~~~gs~~l~~~ 214 (266)
T PLN02688 148 FGAVGK-IWVVDEKL---LDAVTGLSGSGPAYIFLAIEALADG---GVAA------GLPRDVALSLAAQTVLGAAKMVLE 214 (266)
T ss_pred HHhCCC-EEEeCHHH---cchhHhhhcCHHHHHHHHHHHHHHH---HHHc------CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999998 77764310 0000000001123456667777777 5556 999999999987765444433322
Q ss_pred hHHhhccCcc-cccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhC
Q psy9637 238 IKAAFDKNPA-LSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSK 298 (490)
Q Consensus 238 i~~~~~~~~~-~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~ 298 (490)
....+. +.+..-.|+ --....++..++.|++-.+.++....++++.+.
T Consensus 215 ----~~~~~~~l~~~v~spg---------G~t~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~ 263 (266)
T PLN02688 215 ----TGKHPGQLKDMVTSPG---------GTTIAGVHELEKGGFRAALMNAVVAAAKRSREL 263 (266)
T ss_pred ----cCCCHHHHHHhCCCCc---------hHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHh
Confidence 011111 111222221 123445566666777777777777777766543
No 44
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.79 E-value=6.3e-18 Score=181.33 Aligned_cols=201 Identities=14% Similarity=0.110 Sum_probs=155.9
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc------------cc---CCCCeeccCCHHHHHhh
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN------------EA---KGTNIIGAHSLEELVKN 65 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~------------g~---~~~~i~~~~s~~e~v~~ 65 (490)
|++.+||||||+|.||.+||.+|+++||+|++||+++++.+.+.+. .. ...++..++++++++++
T Consensus 1 ~~~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~ 80 (495)
T PRK07531 1 MTMIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAG 80 (495)
T ss_pred CCCcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcC
Confidence 6667899999999999999999999999999999999988765321 00 01135678888888877
Q ss_pred CCCCcEEEEecCCCchHHHH-HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccC
Q psy9637 66 LKKPRRVMMLVKAGSAVDDF-IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLM 143 (490)
Q Consensus 66 l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im 143 (490)
+|+|+.|+|+..+++.. +.++.+.++++ +||+++|+.+..+ .+.+.+..++..+++.|+... ..++ ..+
T Consensus 81 ---aD~Vieavpe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvev 151 (495)
T PRK07531 81 ---ADWIQESVPERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVEL 151 (495)
T ss_pred ---CCEEEEcCcCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEE
Confidence 99999999998777764 46676666655 5677777765543 555666667888899987622 2345 678
Q ss_pred CCCC---cchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHH
Q psy9637 144 PGGN---PAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVS-YAQGFMLMRQAAEIHGWKLNYGG 219 (490)
Q Consensus 144 ~GG~---~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~-~aE~~~la~~a~~~~~~Gld~~~ 219 (490)
++|+ ++.+++++++|+.++.++++++. .+.|++......+ ++|++.++++. |+++++
T Consensus 152 v~g~~t~~e~~~~~~~~~~~lG~~~v~~~k-------------~~~gfi~nrl~~a~~~EA~~L~~~g------~~s~~~ 212 (495)
T PRK07531 152 VGGGKTSPETIRRAKEILREIGMKPVHIAK-------------EIDAFVGDRLLEALWREALWLVKDG------IATTEE 212 (495)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEeecC-------------CCcchhHHHHHHHHHHHHHHHHHcC------CCCHHH
Confidence 8886 68999999999999998887653 3456666666777 49999999999 999999
Q ss_pred HHHHHhcccc
Q psy9637 220 IALMWRGGCI 229 (490)
Q Consensus 220 v~~i~~~g~~ 229 (490)
+.++++.|..
T Consensus 213 id~~~~~g~g 222 (495)
T PRK07531 213 IDDVIRYSFG 222 (495)
T ss_pred HHHHHhhccC
Confidence 9999987753
No 45
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.77 E-value=1.6e-17 Score=165.76 Aligned_cols=243 Identities=12% Similarity=0.111 Sum_probs=159.9
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCC----CeEEEEeCChH-HHHHHHHc-ccCCCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHG----FTVVAYNRTTA-KVDSFLAN-EAKGTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G----~~V~v~dr~~~-~~~~l~~~-g~~~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
|+. |||+|||+|.||.+|+.+|.++| ++|++|||+++ +.+.+... +. ..+.++.++++. +|+||+
T Consensus 1 ~~~-mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~-----~~~~~~~e~~~~---aDvVil 71 (279)
T PRK07679 1 MSI-QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGV-----KGTHNKKELLTD---ANILFL 71 (279)
T ss_pred CCC-CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCc-----eEeCCHHHHHhc---CCEEEE
Confidence 654 69999999999999999999998 89999999864 56776553 32 356788888776 899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcC-CCCChHHHHHHHHHHHHccccccccCCCCCcc---ccccC-CccCCCCC--
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDG-GNSEYQDTDRRSKALEAKGLLYVGCGVSGGED---GARYG-PSLMPGGN-- 147 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~-s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~---~a~~G-~~im~GG~-- 147 (490)
|||+. .+.++++++.+.+.++.+||++ ++..+....+. ... ++||+++.+ .+..+ .+++++++
T Consensus 72 av~p~-~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~----~~~-----~~~v~r~mPn~~~~~~~~~t~~~~~~~~ 141 (279)
T PRK07679 72 AMKPK-DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNL----LQK-----DVPIIRAMPNTSAAILKSATAISPSKHA 141 (279)
T ss_pred EeCHH-HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH----cCC-----CCeEEEECCCHHHHHhcccEEEeeCCCC
Confidence 99985 7888889998888889999997 55543333321 112 356776644 44433 47777776
Q ss_pred -cchHHHHHHHHHhhCCcee------e--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCH
Q psy9637 148 -PAAWPALKPIFQKLNPSFE------T--SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFM-LMRQAAEIHGWKLNY 217 (490)
Q Consensus 148 -~~a~~~v~~ll~~l~~~~~------~--~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~-la~~a~~~~~~Gld~ 217 (490)
++.++.++++|+.+|..+. + ++..| .| .+ .+..+.|++. .+.+. |+|.
T Consensus 142 ~~~~~~~v~~l~~~~G~~~~v~e~~~~~~~a~~G--sg----------pa----~~~~~~eal~e~~~~~------Gl~~ 199 (279)
T PRK07679 142 TAEHIQTAKALFETIGLVSVVEEEDMHAVTALSG--SG----------PA----YIYYVVEAMEKAAKKI------GLKE 199 (279)
T ss_pred CHHHHHHHHHHHHhCCcEEEeCHHHhhhHHHhhc--CH----------HH----HHHHHHHHHHHHHHHc------CCCH
Confidence 4588999999999998665 3 33332 11 11 2445555555 46666 9999
Q ss_pred HHHHHHHhcccchhhHhHhHhHHhhccCcccccccC-ChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q psy9637 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLL-DPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYR 296 (490)
Q Consensus 218 ~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~-~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~ 296 (490)
+...+++.......+.++..- ...|......+ .|++. +...+...++.|+.--+.++....+++..
T Consensus 200 ~~a~~~~~~~~~gsa~~~~~~----~~~~~~l~~~v~spgg~---------t~~gl~~l~~~~~~~~i~~a~~~a~~r~~ 266 (279)
T PRK07679 200 DVAKSLILQTMIGAAEMLKAS----EKHPSILRKEITSPGGT---------TEAGIEVLQEHRFQQALISCITQATQRSH 266 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----CCCHHHHHHhcCCCchH---------HHHHHHHHHHCChHHHHHHHHHHHHHHHH
Confidence 999999877544433444320 12222222223 55542 23344444556666666666666665554
Q ss_pred h
Q psy9637 297 S 297 (490)
Q Consensus 297 ~ 297 (490)
.
T Consensus 267 ~ 267 (279)
T PRK07679 267 N 267 (279)
T ss_pred H
Confidence 3
No 46
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.77 E-value=6.7e-17 Score=160.89 Aligned_cols=192 Identities=18% Similarity=0.210 Sum_probs=139.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
|||+|||+|.||.+||.+|.++|+ +|++|||++++.+.+.+.+.. ..+.++.++. . +|+||+|||.. .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~----~~~~~~~~~~-~---aD~Vilavp~~-~~ 71 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLV----DEIVSFEELK-K---CDVIFLAIPVD-AI 71 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCC----cccCCHHHHh-c---CCEEEEeCcHH-HH
Confidence 479999999999999999999996 789999999998887765531 1245666654 3 89999999995 77
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCC----ccccc----cCC-ccCCC---CCcc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGG----EDGAR----YGP-SLMPG---GNPA 149 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg----~~~a~----~G~-~im~G---G~~~ 149 (490)
.+++.++.+ ++++.+|+|.|++.........+. .+..|+++ |++|+ +..+. .|. .++++ ++++
T Consensus 72 ~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~ 147 (275)
T PRK08507 72 IEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEK 147 (275)
T ss_pred HHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHH
Confidence 888899999 889999999988754433322221 23568888 99875 44443 455 55554 4567
Q ss_pred hHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q psy9637 150 AWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWR 225 (490)
Q Consensus 150 a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~ 225 (490)
.++.++++|+.+|.+++++++.+ ....++++.++.. ....++++.+. . +.+.+.+.++..
T Consensus 148 ~~~~v~~l~~~~G~~~~~~~~~~-----hD~~~a~vs~lph-~~a~~l~~~~~----~------~~~~~~~~~~~~ 207 (275)
T PRK08507 148 HQERAKEIFSGLGMRIVYMDAKE-----HDLHAAYISHLPH-IISFALANTVL----K------EEDERNIFDLAG 207 (275)
T ss_pred HHHHHHHHHHHhCCEEEEeCHHH-----HHHHHHHHhHHHH-HHHHHHHHHHH----h------cCChHHHHhhcc
Confidence 89999999999999999988764 5678999988865 33444444441 2 455555555543
No 47
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.74 E-value=2.6e-16 Score=163.13 Aligned_cols=178 Identities=14% Similarity=0.193 Sum_probs=141.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
+++|+||| +|.||..+|+.|.++||+|++||+++. +++++++.. +|+||+|+|.. .+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~------------------~~~~~~~~~---aDlVilavP~~-~~ 155 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW------------------DRAEDILAD---AGMVIVSVPIH-LT 155 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc------------------hhHHHHHhc---CCEEEEeCcHH-HH
Confidence 46899998 999999999999999999999998631 245566665 89999999996 67
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc-ccCCCCCccccccCC-ccCCCC-CcchHHHHHHHHH
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV-GCGVSGGEDGARYGP-SLMPGG-NPAAWPALKPIFQ 159 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l-d~~vsGg~~~a~~G~-~im~GG-~~~a~~~v~~ll~ 159 (490)
.+++.++.+ +++|.+|+|+|++.+.......+.+ ...|+ ..|++|+......|. .+++++ ++++++.++++++
T Consensus 156 ~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~---~~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~ 231 (374)
T PRK11199 156 EEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAH---SGPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQ 231 (374)
T ss_pred HHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhC---CCCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHH
Confidence 888888988 8999999999998755544444332 12588 668999877767776 566666 5678999999999
Q ss_pred hhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q psy9637 160 KLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIAL 222 (490)
Q Consensus 160 ~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~ 222 (490)
.+|.+++++++.+ ....++++..+ .++.+++++..+++ . +++.+.+.+
T Consensus 232 ~lG~~v~~~~~~~-----HD~~~a~vshL---pH~~a~al~~~l~~-~------~~~~~~~~~ 279 (374)
T PRK11199 232 VWGARLHRISAVE-----HDQNMAFIQAL---RHFATFAYGLHLAK-E------NVDLEQLLA 279 (374)
T ss_pred HCCCEEEECCHHH-----HHHHHHHHHHH---HHHHHHHHHHHHHH-c------CCCHHHHHH
Confidence 9999999988763 55678888733 88888888888876 5 778777655
No 48
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.74 E-value=1.9e-16 Score=158.02 Aligned_cols=174 Identities=20% Similarity=0.270 Sum_probs=130.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|+|+|||+|.||..||..|.++|++|++||++++..+.+.+.+.. ....+..+.+.. +|+||+|+|.. .+.+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~----~~~~~~~~~~~~---aDlVilavp~~-~~~~ 72 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLV----DEASTDLSLLKD---CDLVILALPIG-LLLP 72 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCc----ccccCCHhHhcC---CCEEEEcCCHH-HHHH
Confidence 479999999999999999999999999999999998888766532 112222344444 89999999985 7778
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc-cCCCCCc-cccccCC-ccCC----------CCCcchH
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG-CGVSGGE-DGARYGP-SLMP----------GGNPAAW 151 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld-~~vsGg~-~~a~~G~-~im~----------GG~~~a~ 151 (490)
+++++.+.++++.+|+|+++....... .+.+....|++ .|+.|++ .+...+. .++. +++++.+
T Consensus 73 ~~~~l~~~l~~~~ii~d~~Svk~~~~~----~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~ 148 (279)
T PRK07417 73 PSEQLIPALPPEAIVTDVGSVKAPIVE----AWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNAL 148 (279)
T ss_pred HHHHHHHhCCCCcEEEeCcchHHHHHH----HHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHH
Confidence 889999999999999999987644322 22333345887 5898876 4444443 3332 3577899
Q ss_pred HHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9637 152 PALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIV 195 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~ 195 (490)
+.++++++.+|..++++++.. ....++++.+.......+
T Consensus 149 ~~v~~l~~~lG~~~v~~~~~~-----hD~~~a~~shlp~~~a~~ 187 (279)
T PRK07417 149 AIVEELAVSLGSKIYTADPEE-----HDRAVALISHLPVMVSAA 187 (279)
T ss_pred HHHHHHHHHcCCEEEEcCHHH-----HHHHHHHHcchHHHHHHH
Confidence 999999999999998888753 567888887776554433
No 49
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.73 E-value=1.1e-16 Score=160.54 Aligned_cols=192 Identities=10% Similarity=0.086 Sum_probs=138.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-------ccC------------CCCeeccCCHHHHHhh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-------EAK------------GTNIIGAHSLEELVKN 65 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------g~~------------~~~i~~~~s~~e~v~~ 65 (490)
++|+|||+|.||..||.+|+++||+|++||+++++++.+.+. +.. ..++..++++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 479999999999999999999999999999999998876431 110 0124556788777776
Q ss_pred CCCCcEEEEecCCCchHHH-HHHhhcccCCCCCEE-EcCCCCChHHHHHHHHHH-HHccccccccCCCCCccccccCCcc
Q psy9637 66 LKKPRRVMMLVKAGSAVDD-FIDKLVPLLEKGDII-IDGGNSEYQDTDRRSKAL-EAKGLLYVGCGVSGGEDGARYGPSL 142 (490)
Q Consensus 66 l~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~ii-Id~s~~~~~~~~~~~~~l-~~~gi~~ld~~vsGg~~~a~~G~~i 142 (490)
+|+||+|+|++..++. ++.++.+.++++.++ +++||..+....+..+.. +..|+||+ +|+++++ -..
T Consensus 82 ---aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~~------Lve 151 (288)
T PRK09260 82 ---ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKMK------LVE 151 (288)
T ss_pred ---CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccCc------eEE
Confidence 9999999999877664 457788888888866 788887765544433221 12589999 8987752 266
Q ss_pred CCCC---CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHH
Q psy9637 143 MPGG---NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWK-LNYG 218 (490)
Q Consensus 143 m~GG---~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~G-ld~~ 218 (490)
|++| +++++++++++++.++..++++++.. | . +.|- .....++|++.+.+. | .+++
T Consensus 152 ~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~---G---f----~~nR---l~~~~~~ea~~~~~~-------gv~~~~ 211 (288)
T PRK09260 152 LIRGLETSDETVQVAKEVAEQMGKETVVVNEFP---G---F----VTSR---ISALVGNEAFYMLQE-------GVATAE 211 (288)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcc---c---H----HHHH---HHHHHHHHHHHHHHc-------CCCCHH
Confidence 7887 88999999999999999998888732 1 1 1122 223456677777654 4 4566
Q ss_pred HHHHHHhc
Q psy9637 219 GIALMWRG 226 (490)
Q Consensus 219 ~v~~i~~~ 226 (490)
++=.+++.
T Consensus 212 ~iD~~~~~ 219 (288)
T PRK09260 212 DIDKAIRL 219 (288)
T ss_pred HHHHHHHh
Confidence 66665543
No 50
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.72 E-value=1.4e-16 Score=170.86 Aligned_cols=190 Identities=15% Similarity=0.199 Sum_probs=145.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHH-----------HHcccC--------CCCeeccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSF-----------LANEAK--------GTNIIGAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g~~--------~~~i~~~~s~~e~v~ 64 (490)
..+|||||+|.||..||.+|+++||+|++||++++++++. .+.|.- -.+++++++++++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~- 85 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA- 85 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC-
Confidence 3679999999999999999999999999999999988873 333310 12466788887654
Q ss_pred hCCCCcEEEEecCCCchHHHHH-HhhcccCCCCCEE-EcCCCCChHHHHHHHHHHH--H--ccccccc-cCCCCCccccc
Q psy9637 65 NLKKPRRVMMLVKAGSAVDDFI-DKLVPLLEKGDII-IDGGNSEYQDTDRRSKALE--A--KGLLYVG-CGVSGGEDGAR 137 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~ii-Id~s~~~~~~~~~~~~~l~--~--~gi~~ld-~~vsGg~~~a~ 137 (490)
+ +|+||.|||.+.+++..+ .++...++++.++ .|+||..+. ++.+.+. + .|+||++ +|++.
T Consensus 86 ~---aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~------ 153 (507)
T PRK08268 86 D---CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMK------ 153 (507)
T ss_pred C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCe------
Confidence 4 899999999999998876 5666667788888 488887654 2333332 2 3999999 78872
Q ss_pred cCCccCCCC---CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9637 138 YGPSLMPGG---NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWK 214 (490)
Q Consensus 138 ~G~~im~GG---~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~G 214 (490)
-..|++| ++++++++.++++.++...+++++.. | .+.|-+.. ..++|++.++++. +
T Consensus 154 --LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~p---G-------fi~Nrll~---~~~~Ea~~l~~~g------~ 212 (507)
T PRK08268 154 --LVEVVSGLATDPAVADALYALARAWGKTPVRAKDTP---G-------FIVNRAAR---PYYTEALRVLEEG------V 212 (507)
T ss_pred --eEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCC---C-------hHHHHHHH---HHHHHHHHHHHcC------C
Confidence 2555654 88999999999999999998888642 1 24444443 4899999999997 8
Q ss_pred CCHHHHHHHHhcc
Q psy9637 215 LNYGGIALMWRGG 227 (490)
Q Consensus 215 ld~~~v~~i~~~g 227 (490)
++++++-++++.+
T Consensus 213 ~~~~~iD~al~~~ 225 (507)
T PRK08268 213 ADPATIDAILREA 225 (507)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999998753
No 51
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.72 E-value=1.1e-15 Score=161.37 Aligned_cols=245 Identities=13% Similarity=0.162 Sum_probs=169.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|+|+||| +|.||..+|..|.++|++|++|||++++...+..... +..+.++.+.+.. +|+||+|+|.. .+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~g----v~~~~~~~e~~~~---aDvVIlavp~~-~~~ 72 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELG----VEYANDNIDAAKD---ADIVIISVPIN-VTE 72 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcC----CeeccCHHHHhcc---CCEEEEecCHH-HHH
Confidence 4899997 8999999999999999999999999888655544321 2345677777766 89999999994 778
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCccccccCC-ccCCCC---CcchHHHHHHHH
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGEDGARYGP-SLMPGG---NPAAWPALKPIF 158 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~~a~~G~-~im~GG---~~~a~~~v~~ll 158 (490)
+++.++.+.++++.+|+|++++.........+. ...+..|+++ |++|.......|. .+++.+ +++.+++++++|
T Consensus 73 ~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~-~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll 151 (437)
T PRK08655 73 DVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEY-APEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFL 151 (437)
T ss_pred HHHHHHHhhCCCCCEEEEcccccHHHHHHHHHh-cCCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHH
Confidence 999999999999999999999775554444433 3457889988 8888665566777 555543 567889999999
Q ss_pred HhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHh
Q psy9637 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNI 238 (490)
Q Consensus 159 ~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i 238 (490)
+.+|..++.+++. +--+++.+.....++.+++.+..+ .+. |++.+...+...+| --.+++.+
T Consensus 152 ~~~G~~v~~~~~e--------~HD~~~a~vs~lph~~a~al~~~l-~~~------g~~~~~~~~~a~~~---frd~~~~~ 213 (437)
T PRK08655 152 EKEGARVIVTSPE--------EHDRIMSVVQGLTHFAYISIASTL-KRL------GVDIKESRKFASPI---YELMIDII 213 (437)
T ss_pred HHcCCEEEECCHH--------HHHHHHHHHHHHHHHHHHHHHHHH-HHc------CCCHHHHHhhcChh---hHHHHHHH
Confidence 9999998887763 234455555666666666655544 445 88877765443322 12233334
Q ss_pred HHhhccCccccccc--CChhHHHHHHHHHHHHHHHHHHHH
Q psy9637 239 KAAFDKNPALSNLL--LDPFFKDAIHATQSSWRAVVSQSA 276 (490)
Q Consensus 239 ~~~~~~~~~~~~~~--~~~~f~~~l~~~~kDl~~~~~~A~ 276 (490)
.+....+|.+-.-+ ..+.....++.+.+.+..+.+..+
T Consensus 214 tRIa~~~p~lw~dI~~~N~~~~~~l~~~~~~l~~l~~~l~ 253 (437)
T PRK08655 214 GRILGQNPYLYASIQMNNPQIPEIHETFIKECEELSELVK 253 (437)
T ss_pred HHHhcCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666543322 234333455555555555544443
No 52
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.69 E-value=5.6e-16 Score=165.88 Aligned_cols=192 Identities=16% Similarity=0.159 Sum_probs=142.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHH-----------HHcccC--------CCCeeccCCHHHHH
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSF-----------LANEAK--------GTNIIGAHSLEELV 63 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g~~--------~~~i~~~~s~~e~v 63 (490)
+.++|||||+|.||..||.+|+++||+|++||++++++++. .++|.. ..+++.+++++++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 45689999999999999999999999999999999988753 223311 12456778887653
Q ss_pred hhCCCCcEEEEecCCCchHHHHH-HhhcccCCCCCEEE-cCCCCChHHHHHHHHHH----HHccccccc-cCCCCCcccc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVDDFI-DKLVPLLEKGDIII-DGGNSEYQDTDRRSKAL----EAKGLLYVG-CGVSGGEDGA 136 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiI-d~s~~~~~~~~~~~~~l----~~~gi~~ld-~~vsGg~~~a 136 (490)
+ +|+||.|||.+.+++..+ .++.+.++++.+|. ++|+..+ + ++.+.+ +..|+||++ +|++.
T Consensus 84 -~---aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i--~-~iA~~~~~p~r~~G~HFf~Papv~~----- 151 (503)
T TIGR02279 84 -D---AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI--T-AIAAGLARPERVAGLHFFNPAPVMA----- 151 (503)
T ss_pred -C---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH--H-HHHHhcCcccceEEEeccCccccCc-----
Confidence 4 899999999998888776 55666666555544 3333332 2 233333 345999999 78772
Q ss_pred ccCCccCCCC---CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy9637 137 RYGPSLMPGG---NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGW 213 (490)
Q Consensus 137 ~~G~~im~GG---~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~ 213 (490)
-..+++| ++++++++.++++.++...+++++.+ | .+.|-+. ...++|++.++++.
T Consensus 152 ---LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~p---G-------fi~Nrl~---~~~~~EA~~l~e~g------ 209 (503)
T TIGR02279 152 ---LVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTP---G-------FIVNRVA---RPYYAEALRALEEQ------ 209 (503)
T ss_pred ---eEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCC---C-------cHHHHHH---HHHHHHHHHHHHcC------
Confidence 3567888 88999999999999999998888642 1 1333333 36899999999997
Q ss_pred CCCHHHHHHHHhccc
Q psy9637 214 KLNYGGIALMWRGGC 228 (490)
Q Consensus 214 Gld~~~v~~i~~~g~ 228 (490)
+++++++-++++.+.
T Consensus 210 ~a~~~~ID~al~~~~ 224 (503)
T TIGR02279 210 VAAPAVLDAALRDGA 224 (503)
T ss_pred CCCHHHHHHHHHhcC
Confidence 899999999987643
No 53
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.67 E-value=2.6e-15 Score=152.12 Aligned_cols=198 Identities=12% Similarity=0.065 Sum_probs=140.5
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-----ccC---------CCCeeccCCHHHHHhhC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-----EAK---------GTNIIGAHSLEELVKNL 66 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----g~~---------~~~i~~~~s~~e~v~~l 66 (490)
|+.+++|+|||+|.||..||..|+++|++|++||+++++++.+.+. +.. ..++..++++.++++.
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 79 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG- 79 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc-
Confidence 7777899999999999999999999999999999999988876542 110 0123456677777666
Q ss_pred CCCcEEEEecCCCch-HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCccccccCCc
Q psy9637 67 KKPRRVMMLVKAGSA-VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARYGPS 141 (490)
Q Consensus 67 ~~~dvIil~vp~~~~-v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~G~~ 141 (490)
+|+||+|||+... ...++.++.+.++++.+|+..+++.+ ..+..+.+.. .+++|.+.|..+. ...
T Consensus 80 --aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~~~~~ig~h~~~p~~~~~------l~~ 149 (311)
T PRK06130 80 --ADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP--ITAIAQAVTRPERFVGTHFFTPADVIP------LVE 149 (311)
T ss_pred --CCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCC--HHHHHhhcCCcccEEEEccCCCCccCc------eEE
Confidence 8999999999754 45677777777766665543333332 3344444432 2666666653321 113
Q ss_pred cCCCC--CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q psy9637 142 LMPGG--NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGG 219 (490)
Q Consensus 142 im~GG--~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~ 219 (490)
++.|. ++++++.++++|+.++..++++++.. .|. +++|.+. ..++|++.++++. ++++++
T Consensus 150 i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~--~G~------i~nr~~~----~~~~Ea~~l~~~g------~~~~~~ 211 (311)
T PRK06130 150 VVRGDKTSPQTVATTMALLRSIGKRPVLVKKDI--PGF------IANRIQH----ALAREAISLLEKG------VASAED 211 (311)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCC--CCc------HHHHHHH----HHHHHHHHHHHcC------CCCHHH
Confidence 44443 67899999999999999888876531 121 5666643 6799999999988 899999
Q ss_pred HHHHHhcc
Q psy9637 220 IALMWRGG 227 (490)
Q Consensus 220 v~~i~~~g 227 (490)
+.++++.+
T Consensus 212 id~~~~~~ 219 (311)
T PRK06130 212 IDEVVKWS 219 (311)
T ss_pred HHHHHHhc
Confidence 99998654
No 54
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.66 E-value=5.9e-15 Score=147.64 Aligned_cols=195 Identities=12% Similarity=0.058 Sum_probs=141.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHH-----------HHHcccC--------CCCeeccCCHHHHH
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDS-----------FLANEAK--------GTNIIGAHSLEELV 63 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~g~~--------~~~i~~~~s~~e~v 63 (490)
.+.+|||||+|.||..||.+|+.+||+|++||++++..+. +.+.+.. -.+++.++++++ +
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~ 82 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-F 82 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-h
Confidence 3458999999999999999999999999999999998876 3333321 124556777744 4
Q ss_pred hhCCCCcEEEEecCCCchHHHHH-HhhcccC-CCCCEEEcCCCCChHHHHHHHHHHHHc--cccccc-cCCCCCcccccc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVDDFI-DKLVPLL-EKGDIIIDGGNSEYQDTDRRSKALEAK--GLLYVG-CGVSGGEDGARY 138 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l-~~g~iiId~s~~~~~~~~~~~~~l~~~--gi~~ld-~~vsGg~~~a~~ 138 (490)
+. +|+||.|+|.+..++..+ ..+...+ +++.+++..+++.+...........++ |+||++ +++++..+-
T Consensus 83 ~~---~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvEl--- 156 (286)
T PRK07819 83 AD---RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVEL--- 156 (286)
T ss_pred CC---CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEE---
Confidence 44 999999999999988776 4555555 789999999888877666655444455 899998 667766521
Q ss_pred CCccCCCCCcchHHHHHHHHH-hhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC
Q psy9637 139 GPSLMPGGNPAAWPALKPIFQ-KLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWK-LN 216 (490)
Q Consensus 139 G~~im~GG~~~a~~~v~~ll~-~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~G-ld 216 (490)
....++++++++++.+++. .++...+.+++.. | .... ......++|++.+.+. | .+
T Consensus 157 --v~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~p---G---fi~n-------Ri~~~~~~Ea~~ll~e-------Gv~~ 214 (286)
T PRK07819 157 --VPTLVTSEATVARAEEFASDVLGKQVVRAQDRS---G---FVVN-------ALLVPYLLSAIRMVES-------GFAT 214 (286)
T ss_pred --eCCCCCCHHHHHHHHHHHHHhCCCCceEecCCC---C---hHHH-------HHHHHHHHHHHHHHHh-------CCCC
Confidence 4556789999999999988 5999888777632 1 1111 2244556677777665 4 45
Q ss_pred HHHHHHHHhc
Q psy9637 217 YGGIALMWRG 226 (490)
Q Consensus 217 ~~~v~~i~~~ 226 (490)
++++=.+++.
T Consensus 215 ~~dID~~~~~ 224 (286)
T PRK07819 215 AEDIDKAMVL 224 (286)
T ss_pred HHHHHHHHHh
Confidence 6666666543
No 55
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.65 E-value=6.9e-15 Score=147.70 Aligned_cols=193 Identities=18% Similarity=0.227 Sum_probs=133.0
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-----------ccC--------CCCeeccCCHHH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-----------EAK--------GTNIIGAHSLEE 61 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------g~~--------~~~i~~~~s~~e 61 (490)
|.+.++|+|||+|.||..||.+|+++|++|++||+++++++.+.+. +.. ..+++.++++++
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 80 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED 80 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH
Confidence 4345789999999999999999999999999999999988764421 110 023455677754
Q ss_pred HHhhCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEE-cCCCCChHHHHHHHHHHHH----ccccccc-cCCCCCcc
Q psy9637 62 LVKNLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIII-DGGNSEYQDTDRRSKALEA----KGLLYVG-CGVSGGED 134 (490)
Q Consensus 62 ~v~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiI-d~s~~~~~~~~~~~~~l~~----~gi~~ld-~~vsGg~~ 134 (490)
++. +|+||.|||...+++ .++.++.+.++++.+|+ ++|+..+ + ++.+.+.. .|+||++ +|++++.+
T Consensus 81 -~~~---aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--s-~la~~~~~~~r~~g~h~~~p~~~~~~ve 153 (292)
T PRK07530 81 -LAD---CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI--T-RLASATDRPERFIGIHFMNPVPVMKLVE 153 (292)
T ss_pred -hcC---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--H-HHHhhcCCcccEEEeeccCCcccCceEE
Confidence 444 899999999976655 55678888899999887 5554432 2 34444321 3889998 56554432
Q ss_pred ccccCCccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9637 135 GARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWK 214 (490)
Q Consensus 135 ~a~~G~~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~G 214 (490)
- ....+++++.++++.++|+.++..++++++.+ -+++++++ ...+.|++.+.++ |
T Consensus 154 i-----~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p---------g~i~nRl~----~~~~~ea~~~~~~-------g 208 (292)
T PRK07530 154 L-----IRGIATDEATFEAAKEFVTKLGKTITVAEDFP---------AFIVNRIL----LPMINEAIYTLYE-------G 208 (292)
T ss_pred E-----eCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC---------ChHHHHHH----HHHHHHHHHHHHh-------C
Confidence 1 22256899999999999999999888877653 24445443 3345666666655 4
Q ss_pred C-CHHHHHHHHh
Q psy9637 215 L-NYGGIALMWR 225 (490)
Q Consensus 215 l-d~~~v~~i~~ 225 (490)
+ +++++-.+++
T Consensus 209 ~~~~~~iD~~~~ 220 (292)
T PRK07530 209 VGSVEAIDTAMK 220 (292)
T ss_pred CCCHHHHHHHHH
Confidence 4 5555555554
No 56
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.65 E-value=4.3e-15 Score=147.98 Aligned_cols=273 Identities=17% Similarity=0.112 Sum_probs=187.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------CCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------GTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
+++|+|||.|.+|++||..|+++||+|.+|.|+++..+++.....+ +.++.++++++++++. +|+|++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~---ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG---ADIIVI 77 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc---CCEEEE
Confidence 3689999999999999999999999999999999999988764221 3456678899999887 899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHH-HHHHHc-cccccccCCCCCccccc----cCC-ccCCCC-
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRS-KALEAK-GLLYVGCGVSGGEDGAR----YGP-SLMPGG- 146 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~-~~l~~~-gi~~ld~~vsGg~~~a~----~G~-~im~GG- 146 (490)
.||. +.++++++++.+.+.++.++|.++.+.-..+.++. +.+++. +.+. ..+..||.-|. .-+ .+.+++
T Consensus 78 avPs-~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~--~~vLSGPs~A~EVa~g~pta~~vas~ 154 (329)
T COG0240 78 AVPS-QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNP--IAVLSGPSFAKEVAQGLPTAVVVASN 154 (329)
T ss_pred ECCh-HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCe--EEEEECccHHHHHhcCCCcEEEEecC
Confidence 9999 69999999998899999999999998877676666 444332 3333 45555555543 333 444444
Q ss_pred CcchHHHHHHHHHhhCCceeeCCC-CCCC------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy9637 147 NPAAWPALKPIFQKLNPSFETSAP-TPKP------------QRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGW 213 (490)
Q Consensus 147 ~~~a~~~v~~ll~~l~~~~~~~g~-~g~~------------~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~ 213 (490)
|++..++++.+|..=.-+++...+ .|.. .| -..-+.+=.|+-.+....+++|+-.++...
T Consensus 155 d~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~G-i~dGlg~G~NakaalitrGL~Em~rlg~~l------ 227 (329)
T COG0240 155 DQEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAG-IADGLGLGDNAKAALITRGLAEMTRLGVAL------ 227 (329)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHH-HHHHhhcChhHHHHHHHhHHHHHHHHHHHh------
Confidence 667777788877752112221111 1100 00 011223345777788888899999999998
Q ss_pred CCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCCh---h-HH---HHHHHHHHHHHHHHHHHHHcCCCchHHH
Q psy9637 214 KLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDP---F-FK---DAIHATQSSWRAVVSQSALLGIPTPAFA 286 (490)
Q Consensus 214 Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~---~-f~---~~l~~~~kDl~~~~~~A~~~gv~~P~~~ 286 (490)
|-+++++...-.-| +++-.+.+...+|.++...+-.. . .. ..+-...+..+.+.+.++++++.+|+++
T Consensus 228 G~~~~T~~gLsGlG-----DLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~ 302 (329)
T COG0240 228 GAKPETFMGLSGLG-----DLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITE 302 (329)
T ss_pred CCCcchhccccccc-----ceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHH
Confidence 88877665553322 33444444455555544322111 1 00 1344557888999999999999999999
Q ss_pred HHHHHHHH
Q psy9637 287 TALAFYDG 294 (490)
Q Consensus 287 aa~~~~~~ 294 (490)
++++++..
T Consensus 303 ~Vy~vl~~ 310 (329)
T COG0240 303 AVYRVLYE 310 (329)
T ss_pred HHHHHHhC
Confidence 99998763
No 57
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.64 E-value=9.6e-15 Score=146.88 Aligned_cols=195 Identities=11% Similarity=0.139 Sum_probs=133.6
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHH-----------HHHcccC--------CCCeeccCCHHH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDS-----------FLANEAK--------GTNIIGAHSLEE 61 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~g~~--------~~~i~~~~s~~e 61 (490)
|..+++|+|||+|.||.+||.+|+++|++|++||+++++++. +.+.+.. ...+...++. +
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~ 79 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-E 79 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-H
Confidence 656678999999999999999999999999999999988764 2222210 0123334444 4
Q ss_pred HHhhCCCCcEEEEecCCCchHHHH-HHhhcccCCCCCEEE-cCCCCChHHHHHHHHH-HHHccccccccCCCCCcccccc
Q psy9637 62 LVKNLKKPRRVMMLVKAGSAVDDF-IDKLVPLLEKGDIII-DGGNSEYQDTDRRSKA-LEAKGLLYVGCGVSGGEDGARY 138 (490)
Q Consensus 62 ~v~~l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiI-d~s~~~~~~~~~~~~~-l~~~gi~~ld~~vsGg~~~a~~ 138 (490)
.++. +|+||.|||.+.+++.. +.++.+.++++.+|+ ++|+..+.+..+.... .+..|+||++.|..+..
T Consensus 80 ~~~~---aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~l----- 151 (295)
T PLN02545 80 ELRD---ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKL----- 151 (295)
T ss_pred HhCC---CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCce-----
Confidence 4554 99999999988777765 467888888888886 6777654443333221 12248899999976422
Q ss_pred CCccCC---CCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9637 139 GPSLMP---GGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKL 215 (490)
Q Consensus 139 G~~im~---GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gl 215 (490)
..++ +++++++++++++|+.++..++++++.. | .++++.+ ...++|++.+.+.- -.
T Consensus 152 --veiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~---g------~i~nri~----~~~~~ea~~~~~~g------v~ 210 (295)
T PLN02545 152 --VEIIRGADTSDEVFDATKALAERFGKTVVCSQDYP---G------FIVNRIL----MPMINEAFYALYTG------VA 210 (295)
T ss_pred --EEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcc---c------HHHHHHH----HHHHHHHHHHHHcC------CC
Confidence 2233 3588999999999999999988877642 1 1333333 33477887777663 35
Q ss_pred CHHHHHHHHh
Q psy9637 216 NYGGIALMWR 225 (490)
Q Consensus 216 d~~~v~~i~~ 225 (490)
+++++-.++.
T Consensus 211 ~~~~iD~~~~ 220 (295)
T PLN02545 211 SKEDIDTGMK 220 (295)
T ss_pred CHHHHHHHHH
Confidence 5666666554
No 58
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=1.2e-14 Score=136.44 Aligned_cols=218 Identities=24% Similarity=0.378 Sum_probs=158.3
Q ss_pred HHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCcccccc
Q psy9637 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARY 138 (490)
Q Consensus 59 ~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~ 138 (490)
++++...|+.-|+||=--.+ ..++.++.-...-.+|--++|++||--..- .+.|. |-+.||+..+..
T Consensus 77 i~~la~~L~~GDivIDGGNS--~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G-------~~~G~----~lMiGG~~~a~~ 143 (300)
T COG1023 77 IDDLAPLLSAGDIVIDGGNS--NYKDSLRRAKLLAEKGIHFLDVGTSGGVWG-------AERGY----CLMIGGDEEAVE 143 (300)
T ss_pred HHHHHhhcCCCCEEEECCcc--chHHHHHHHHHHHhcCCeEEeccCCCCchh-------hhcCc----eEEecCcHHHHH
Confidence 44555567778888854332 455666554444568889999999864322 23454 446677766543
Q ss_pred CC-ccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy9637 139 GP-SLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217 (490)
Q Consensus 139 G~-~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~ 217 (490)
.. .+ |+.+.+ =-.-+.|+||.| .++++|++||-+..+++++++|+|.+.+.. .|.+|.
T Consensus 144 ~~~pi--------f~~lA~----ge~Gyl~~Gp~G-----sGHfvKMVHNGIEYGmM~a~aEGfelL~~s----~fD~D~ 202 (300)
T COG1023 144 RLEPI--------FKALAP----GEDGYLYCGPSG-----SGHFVKMVHNGIEYGMMQAIAEGFELLKNS----PFDYDL 202 (300)
T ss_pred HHHHH--------HHhhCc----CcCccccccCCC-----cchhHHHHhccHHHHHHHHHHHHHHHHHhC----CCCCCH
Confidence 22 21 111111 134578889987 458999999999999999999999999887 689999
Q ss_pred HHHHHHHhcccchhhHhHhHhHHhhccCccccccc---CChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHH-HHH
Q psy9637 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLL---LDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALA-FYD 293 (490)
Q Consensus 218 ~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~---~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~-~~~ 293 (490)
++++++|+.|+.||||+++....+|.+.+++.+.. -+.+ .-++.++.|.++|+|+|+++.++. .|.
T Consensus 203 ~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~g~v~dSG----------EGrWTv~~aldlgvpaPVia~al~~Rf~ 272 (300)
T COG1023 203 EAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQISGRVSDSG----------EGRWTVEEALDLGVPAPVIALALMMRFR 272 (300)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhcCeeccCC----------CceeehHHHHhcCCCchHHHHHHHHHHh
Confidence 99999999999999999999999999888755421 1111 125678899999999999988875 444
Q ss_pred HHHhCCChhhhHHHHHHhhcccccccc
Q psy9637 294 GYRSKRLPANLLQAQRDYFGAHTYELL 320 (490)
Q Consensus 294 ~~~~~g~~~~~~~a~rd~fgah~~~r~ 320 (490)
+....-+...+++++|.-||.|..+++
T Consensus 273 S~~~d~f~~kvlaalR~~FGgH~vk~k 299 (300)
T COG1023 273 SRQDDTFAGKVLAALRNEFGGHAVKKK 299 (300)
T ss_pred ccchhhHHHHHHHHHHHHhCCcccccC
Confidence 444455667899999999999987764
No 59
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.59 E-value=1.5e-13 Score=136.19 Aligned_cols=251 Identities=12% Similarity=0.130 Sum_probs=151.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC---CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG---FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
||+|+|||+|.||..++..|.++| ++|.+|||++++.+.+.+... +....+..+++.. +|+||+|+|+.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g----~~~~~~~~~~~~~---advVil~v~~~- 73 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYG----VRAATDNQEAAQE---ADVVVLAVKPQ- 73 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcC----CeecCChHHHHhc---CCEEEEEcCHH-
Confidence 578999999999999999999999 789999999999888776421 2346777777765 89999999984
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCC--CcchHHHHHHH
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGG--NPAAWPALKPI 157 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG--~~~a~~~v~~l 157 (490)
.++++++.+.+.+ +++||...++.+....+ + ....+.+++.+ +...+.....+. .+.++. ++++++.++.+
T Consensus 74 ~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~--~-~~~~~~~iv~~-~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l 147 (267)
T PRK11880 74 VMEEVLSELKGQL--DKLVVSIAAGVTLARLE--R-LLGADLPVVRA-MPNTPALVGAGMTALTANALVSAEDRELVENL 147 (267)
T ss_pred HHHHHHHHHHhhc--CCEEEEecCCCCHHHHH--H-hcCCCCcEEEe-cCCchHHHcCceEEEecCCCCCHHHHHHHHHH
Confidence 8999999988877 57888888876543222 2 22233344332 112222233444 345553 77899999999
Q ss_pred HHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHhcccchhhH
Q psy9637 158 FQKLNPSFETSAPTPKPQRDKKEFLENIRQALYA---SKIVSYAQGFMLMR-QAAEIHGWKLNYGGIALMWRGGCIIRSV 233 (490)
Q Consensus 158 l~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~---~~~~~~aE~~~la~-~a~~~~~~Gld~~~v~~i~~~g~~~~s~ 233 (490)
|+.+|..+....+. ....+. ++.. +.+..+.|++..+. +. |++.++..+++...-.+...
T Consensus 148 ~~~lG~~~~~~~e~---------~~d~~~-a~~~~~pa~~~~~~~~~~~~~~~~------Gl~~~~a~~~~~~~~~g~~~ 211 (267)
T PRK11880 148 LSAFGKVVWVDDEK---------QMDAVT-AVSGSGPAYVFLFIEALADAGVKL------GLPREQARKLAAQTVLGAAK 211 (267)
T ss_pred HHhCCeEEEECChH---------hcchHH-HHhcChHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHHHHH
Confidence 99999755432121 111110 0111 23334455554433 34 99999888876533222222
Q ss_pred hHhHhHHhhccCcc-cccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHh
Q psy9637 234 FLGNIKAAFDKNPA-LSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRS 297 (490)
Q Consensus 234 ~l~~i~~~~~~~~~-~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~ 297 (490)
++.. .+..+. +.+..-.| ---....++..++.|++-.+.++..+.++++++
T Consensus 212 ~~~~----~~~~~~~l~~~v~tp---------gG~t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~ 263 (267)
T PRK11880 212 LLLE----SGEHPAELRDNVTSP---------GGTTIAALRVLEEKGLRAAVIEAVQAAAKRSKE 263 (267)
T ss_pred HHHh----cCCCHHHHHHhCCCC---------cHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 2221 000110 10111111 122344555666667777777777776666654
No 60
>PRK07680 late competence protein ComER; Validated
Probab=99.59 E-value=1e-13 Score=137.90 Aligned_cols=149 Identities=19% Similarity=0.247 Sum_probs=111.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF----TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
|+|+|||+|.||..|+..|.++|+ +|.+|||++++.+.+.+... .+..+.++.+++.. +|+||+|+|+ .
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~---g~~~~~~~~~~~~~---aDiVilav~p-~ 73 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP---GIHVAKTIEEVISQ---SDLIFICVKP-L 73 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC---CeEEECCHHHHHHh---CCEEEEecCH-H
Confidence 479999999999999999999994 79999999998888765321 13456788888776 8999999987 5
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCC--CCcchHHHHHHH
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPG--GNPAAWPALKPI 157 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~G--G~~~a~~~v~~l 157 (490)
.+.++++++.+.+.++++||++++... ...+.+.+..+.++++.. .+..+..|. .++.| .+++..+.++++
T Consensus 74 ~~~~vl~~l~~~l~~~~~iis~~ag~~--~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~~l 147 (273)
T PRK07680 74 DIYPLLQKLAPHLTDEHCLVSITSPIS--VEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLERL 147 (273)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCCC--HHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHHHH
Confidence 789999999999988999999998653 333333333334555542 223455677 44555 355778999999
Q ss_pred HHhhCCcee
Q psy9637 158 FQKLNPSFE 166 (490)
Q Consensus 158 l~~l~~~~~ 166 (490)
|+.+|..+.
T Consensus 148 l~~~G~~~~ 156 (273)
T PRK07680 148 FSNISTPLV 156 (273)
T ss_pred HHcCCCEEE
Confidence 999996443
No 61
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.59 E-value=1.3e-12 Score=129.39 Aligned_cols=152 Identities=11% Similarity=0.095 Sum_probs=116.0
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHHCCCeEEEEeCChHHHH-----HHHHcccCCCCeeccCCH
Q psy9637 5 GDIGLIGLAVM--------------------GQNLILNMNDHGFTVVAYNRTTAKVD-----SFLANEAKGTNIIGAHSL 59 (490)
Q Consensus 5 ~~IgiIGlG~M--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~-----~l~~~g~~~~~i~~~~s~ 59 (490)
|||.|.|.|+- |.+||+||+++||+|++|||++++++ .+.+.|.. .++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~-----~AaS~ 75 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVK-----VVSDD 75 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCe-----ecCCH
Confidence 47888888864 78999999999999999999977653 46666553 68899
Q ss_pred HHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHH---HHHc--ccc-ccccCCCCCc
Q psy9637 60 EELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKA---LEAK--GLL-YVGCGVSGGE 133 (490)
Q Consensus 60 ~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~---l~~~--gi~-~ld~~vsGg~ 133 (490)
.++++. +|+||+|+|++.++++|++++++.+.+|.+|||+||+.|....+..+. +.++ |+. |..+.|-|.+
T Consensus 76 aEAAa~---ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~ 152 (341)
T TIGR01724 76 KEAAKH---GEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTP 152 (341)
T ss_pred HHHHhC---CCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCC
Confidence 999988 899999999999999999999999999999999999999988888755 2333 332 3334443333
Q ss_pred cccccCCccCCC--------CCcchHHHHHHHHHhhCCceee
Q psy9637 134 DGARYGPSLMPG--------GNPAAWPALKPIFQKLNPSFET 167 (490)
Q Consensus 134 ~~a~~G~~im~G--------G~~~a~~~v~~ll~~l~~~~~~ 167 (490)
.. +.-+..| .++|.++++-++.++.+...+.
T Consensus 153 ~~---~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~ 191 (341)
T TIGR01724 153 QH---GHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYV 191 (341)
T ss_pred CC---ceeeeccccccccccCCHHHHHHHHHHHHHhCCCeee
Confidence 22 1111111 3578889999999999887665
No 62
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.58 E-value=1e-13 Score=139.78 Aligned_cols=259 Identities=16% Similarity=0.154 Sum_probs=157.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC----CCC----eeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK----GTN----IIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~----~~~----i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|||+|||+|.||..+|..|+++||+|++|+| +++.+.+.+.+.. ... ....+++++... .+|+||+++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG---PFDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC---CCCEEEEEe
Confidence 5899999999999999999999999999999 7888877765432 000 112344554433 489999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc----cccccccCCCCCccccccCC-ccCCCC----C
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK----GLLYVGCGVSGGEDGARYGP-SLMPGG----N 147 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~----gi~~ld~~vsGg~~~a~~G~-~im~GG----~ 147 (490)
|+. +++++++.+.+.+.++.+||...|... ......+.+.+. |+.++.+...++..-...+. .+.+|. .
T Consensus 77 k~~-~~~~~~~~l~~~~~~~~~ii~~~nG~~-~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 77 KAY-QLDAAIPDLKPLVGEDTVIIPLQNGIG-QLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred ccc-CHHHHHHHHHhhcCCCCEEEEeeCCCC-hHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 995 889999999998888889998888753 222222333221 44555555443222222233 444443 2
Q ss_pred cchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Q psy9637 148 PAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYAS---------------------KIVSYAQGFMLMRQ 206 (490)
Q Consensus 148 ~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~---------------------~~~~~aE~~~la~~ 206 (490)
.+..+.+..+|...+..+...... ....+.|++.|+.... ....+.|...++++
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~di-----~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a 229 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSENI-----RQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARA 229 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHHH-----HHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 345566777777666544332222 2467889888865433 23445666666666
Q ss_pred HHHHhCCCCCHHHHHHHHhc----ccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCc
Q psy9637 207 AAEIHGWKLNYGGIALMWRG----GCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPT 282 (490)
Q Consensus 207 a~~~~~~Gld~~~v~~i~~~----g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~ 282 (490)
. |+.++.+.+.+.+.. ..-..|.+++++.. +-..+++.. ...++++|+++|+++
T Consensus 230 ~----G~~~~~~~~~~~~~~~~~~~~~~~sSm~~D~~~---------------gr~tEid~i---~G~vv~~a~~~gv~~ 287 (305)
T PRK12921 230 E----GAPLRDDVVEEIVKIFAGAPGDMKTSMLRDMEK---------------GRPLEIDHL---QGVLLRRARAHGIPT 287 (305)
T ss_pred c----CCCCChhHHHHHHHHHhccCCCCCcHHHHHHHc---------------CCcccHHHH---HHHHHHHHHHhCCCC
Confidence 5 444444444333221 00011112222110 000112211 346999999999999
Q ss_pred hHHHHHHHHHHHHH
Q psy9637 283 PAFATALAFYDGYR 296 (490)
Q Consensus 283 P~~~aa~~~~~~~~ 296 (490)
|..+..+++++...
T Consensus 288 P~~~~l~~~~~~~~ 301 (305)
T PRK12921 288 PILDTVYALLKAYE 301 (305)
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999987654
No 63
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.58 E-value=2.5e-13 Score=134.01 Aligned_cols=186 Identities=12% Similarity=0.135 Sum_probs=129.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe---EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT---VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~---V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
|+|||||+|.||..|++.|.++|+. +.+|||++++.+.+.+... .+..+.++.+++++ +|+||+|+|+ ..
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~---~~~~~~~~~~~~~~---aDvVilav~p-~~ 73 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP---KVRIAKDNQAVVDR---SDVVFLAVRP-QI 73 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC---CceEeCCHHHHHHh---CCEEEEEeCH-HH
Confidence 4799999999999999999999865 5799999999888876531 12356788888877 8999999996 68
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhh
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l 161 (490)
+.+++.++. +.++++||+...+. ....+.+.+......+..+|.... ....|.+.+.+++ +.++++|+.+
T Consensus 74 ~~~vl~~l~--~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~~~--a~~~g~t~~~~~~----~~~~~l~~~l 143 (258)
T PRK06476 74 AEEVLRALR--FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLPFV--AERKGVTAIYPPD----PFVAALFDAL 143 (258)
T ss_pred HHHHHHHhc--cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCChh--hhCCCCeEecCCH----HHHHHHHHhc
Confidence 889988762 56789999876544 233333333333345667776221 1233555555553 5899999999
Q ss_pred CCceeeCCCCCCCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q psy9637 162 NPSFETSAPTPKPQRDKKEFLENIRQA-----LYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWR 225 (490)
Q Consensus 162 ~~~~~~~g~~g~~~g~~a~~~Kll~n~-----l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~ 225 (490)
|..++...+. ...++ +.+..+..+.++..++++. |+|.++..+++.
T Consensus 144 G~~~~~~~e~------------~~d~~~a~~s~~a~~~~~~~~~~~~~~~~------Gl~~~~a~~~~~ 194 (258)
T PRK06476 144 GTAVECDSEE------------EYDLLAAASALMATYFGILETATGWLEEQ------GLKRQKARAYLA 194 (258)
T ss_pred CCcEEECChH------------hccceeehhccHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHH
Confidence 9877632221 11111 3344445666777788888 999998888875
No 64
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.58 E-value=5.6e-15 Score=149.01 Aligned_cols=116 Identities=41% Similarity=0.743 Sum_probs=100.2
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHh-hcCCChHHHHHHHHHhccCc-chhHHHHHHHHHhcccCCCCC
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTG-ALGMSHDEMSAVFEDWNKGE-LDSFLIEITKDILKFKDTDGA 426 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~-~~~~~~~~~~~~~~~w~~g~-~~s~l~~~~~~~~~~~~~~~~ 426 (490)
+.|+|+.|+||++|++||.|++++|++++|++.+++. ..|+ |+.++++.|+.|+ ++||+++...+++.+ |
T Consensus 160 ~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gl---d~~~~~~~~~~~~~~~s~~l~~~~~~~~~-~---- 231 (301)
T PRK09599 160 YLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDL---DLAAVAEVWRRGSVIRSWLLDLTADALAE-D---- 231 (301)
T ss_pred eEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---CHHHHHHHHhCCcHHHHHHHHHHHHHHhc-C----
Confidence 5689999999999999999999999999999999985 3566 8899999999987 799999999999964 3
Q ss_pred cchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCc
Q psy9637 427 PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLF 472 (490)
Q Consensus 427 ~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~ 472 (490)
+.++.+.+.+.+.++.+|++++|.+.++|+|++++|++.|+.|...
T Consensus 232 ~~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~ 277 (301)
T PRK09599 232 PKLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQE 277 (301)
T ss_pred CCHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 2234444555568889999999999999999999999999888744
No 65
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.57 E-value=3.5e-14 Score=143.59 Aligned_cols=159 Identities=21% Similarity=0.305 Sum_probs=121.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.++|+|||+|.||..+|..|.++|+ +|++|||++++.+.+.+.+.. ...+.++.+++.. +|+||+|+|.. .
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~---~~~~~~~~~~~~~---aDvViiavp~~-~ 78 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLG---DRVTTSAAEAVKG---ADLVILCVPVG-A 78 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCC---ceecCCHHHHhcC---CCEEEECCCHH-H
Confidence 3689999999999999999999995 899999999988877665431 1234567776665 99999999995 6
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCcc-ccc-------cCC-c---cCCCCCc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGED-GAR-------YGP-S---LMPGGNP 148 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~-~a~-------~G~-~---im~GG~~ 148 (490)
+.+++.++.+.++++.+|+|.++..........+. ...+++|+++ |+.|++. +.. .|. . .+.++++
T Consensus 79 ~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~-~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~ 157 (307)
T PRK07502 79 SGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPH-LPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDP 157 (307)
T ss_pred HHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHh-CCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCH
Confidence 78888888888999999999988764443333332 2357789988 8887652 222 222 2 2346788
Q ss_pred chHHHHHHHHHhhCCceeeCCC
Q psy9637 149 AAWPALKPIFQKLNPSFETSAP 170 (490)
Q Consensus 149 ~a~~~v~~ll~~l~~~~~~~g~ 170 (490)
++++.++++|+.+|..++.+++
T Consensus 158 ~~~~~~~~l~~~lG~~~~~~~~ 179 (307)
T PRK07502 158 AAVARLTAFWRALGARVEEMDP 179 (307)
T ss_pred HHHHHHHHHHHHcCCEEEEcCH
Confidence 8999999999999998887665
No 66
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.57 E-value=6.5e-14 Score=143.66 Aligned_cols=267 Identities=14% Similarity=0.089 Sum_probs=170.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC----C------CCeeccCCHHHHHhhCCCCcEEE
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK----G------TNIIGAHSLEELVKNLKKPRRVM 73 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~----~------~~i~~~~s~~e~v~~l~~~dvIi 73 (490)
+|||+|||.|.||..+|..|+++| +|++|.|+++..+.+.+.+.. + .++...+++.+.++. +|+||
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~---aDlVi 82 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC---ADVVV 82 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc---CCEEE
Confidence 579999999999999999999999 688999999999888765321 1 134456777776665 89999
Q ss_pred EecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHH-HHHHHc-cccccccCCCCCcccccc---CC--ccCCCC
Q psy9637 74 MLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRS-KALEAK-GLLYVGCGVSGGEDGARY---GP--SLMPGG 146 (490)
Q Consensus 74 l~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~-~~l~~~-gi~~ld~~vsGg~~~a~~---G~--~im~GG 146 (490)
++||+ ..++++++++.+.+.++.++|.+.++....+.++. +.+.+. +- ....+..||.-+.+ |. .+.++.
T Consensus 83 lavps-~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~ 159 (341)
T PRK12439 83 MGVPS-HGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAM 159 (341)
T ss_pred EEeCH-HHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEe
Confidence 99998 58999999999999888889998888765433333 233221 10 01123445554442 44 233343
Q ss_pred -CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Q psy9637 147 -NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQA-----------------LYASKIVSYAQGFMLMRQAA 208 (490)
Q Consensus 147 -~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~-----------------l~~~~~~~~aE~~~la~~a~ 208 (490)
+++..+.++.+|+.-+-+++...+.- ..++.|.+.|. ..+....++.|+..++++.
T Consensus 160 ~~~~~~~~v~~lf~~~~~~v~~s~Di~-----gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~- 233 (341)
T PRK12439 160 PDQHLATRLSPLFRTRRFRVYTTDDVV-----GVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAM- 233 (341)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEcCchH-----HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHh-
Confidence 44556677777765443333322210 13344444444 3344556778888888888
Q ss_pred HHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCCh-hHHHH------HHHHHHHHHHHHHHHHHcCCC
Q psy9637 209 EIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDP-FFKDA------IHATQSSWRAVVSQSALLGIP 281 (490)
Q Consensus 209 ~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~-~f~~~------l~~~~kDl~~~~~~A~~~gv~ 281 (490)
|.+++++...-.-| +++-.+.....+|..+...+-.. .+... +-......+.+.+.++++++.
T Consensus 234 -----G~~~~t~~gl~G~G-----Dl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~ 303 (341)
T PRK12439 234 -----GGNPETFAGLAGMG-----DLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLN 303 (341)
T ss_pred -----CCCcccccccchhh-----hhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCC
Confidence 88888887654322 23333333333444433322111 11111 233567788899999999999
Q ss_pred chHHHHHHHHHH
Q psy9637 282 TPAFATALAFYD 293 (490)
Q Consensus 282 ~P~~~aa~~~~~ 293 (490)
+|+++++++++.
T Consensus 304 ~Pi~~~~~~il~ 315 (341)
T PRK12439 304 MPIAREVDAVIN 315 (341)
T ss_pred CCHHHHHHHHHh
Confidence 999999998874
No 67
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.56 E-value=3.5e-13 Score=135.64 Aligned_cols=259 Identities=19% Similarity=0.180 Sum_probs=151.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---CC---CeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---GT---NIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---~~---~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|||+|||+|.||..+|..|+++|++|++++|+++..+.+.+.+.. +. ++...+++.++ +.+|+||+++|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL----GPQDLVILAVKA 76 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc----CCCCEEEEeccc
Confidence 489999999999999999999999999999998888887765432 00 11223445443 348999999998
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc----cccccccCCCCCccccccCC-ccCCCCC---cch
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK----GLLYVGCGVSGGEDGARYGP-SLMPGGN---PAA 150 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~----gi~~ld~~vsGg~~~a~~G~-~im~GG~---~~a 150 (490)
. +++++++.+.+.+.++.+||...|+... .....+.+... |+.+..+-..++..-...+. .+.+|.. .+.
T Consensus 77 ~-~~~~~~~~l~~~l~~~~~iv~~~nG~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 77 Y-QLPAALPSLAPLLGPDTPVLFLQNGVGH-LEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred c-cHHHHHHHHhhhcCCCCEEEEecCCCCc-HHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 5 8899999999999888899998887532 12222222221 22233332222111111222 3333322 233
Q ss_pred HHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Q psy9637 151 WPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYA---------------------SKIVSYAQGFMLMRQAAE 209 (490)
Q Consensus 151 ~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~---------------------~~~~~~aE~~~la~~a~~ 209 (490)
.+.+.++|+..+..+...... ....+.|++.|+... .....+.|...++++.
T Consensus 155 ~~~l~~~l~~~~~~~~~~~di-----~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~-- 227 (304)
T PRK06522 155 AEALADLLNAAGLDVEWSPDI-----RTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAE-- 227 (304)
T ss_pred HHHHHHHHHhcCCCCCCChHH-----HHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHc--
Confidence 566777777666543322111 245566777665332 2334456666666665
Q ss_pred HhCCCCCHHHHHHHHhccc----chhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHH
Q psy9637 210 IHGWKLNYGGIALMWRGGC----IIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAF 285 (490)
Q Consensus 210 ~~~~Gld~~~v~~i~~~g~----~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~ 285 (490)
|+.++.+.+.+.+..-+ -.+|.+++++... + + .+++. -...+++.|+++|+|+|..
T Consensus 228 --G~~~~~~~~~~~~~~~~~~~~~~~sSm~~D~~~g---------r---~---tEid~---i~G~~v~~a~~~gv~~P~~ 287 (304)
T PRK06522 228 --GVHLSVEEVREYVRQVIQKTAANTSSMLQDLEAG---------R---P---TEIDA---IVGYVLRRGRKHGIPTPLN 287 (304)
T ss_pred --CCCCChHHHHHHHHHHhhccCCCCchHHHHHHcC---------C---C---cccch---hccHHHHHHHHcCCCCcHH
Confidence 44445454444332110 1111222221100 0 0 01111 1455899999999999999
Q ss_pred HHHHHHHHHHH
Q psy9637 286 ATALAFYDGYR 296 (490)
Q Consensus 286 ~aa~~~~~~~~ 296 (490)
+..++.++...
T Consensus 288 ~~l~~~~~~~~ 298 (304)
T PRK06522 288 DALYGLLKAKE 298 (304)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 68
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.55 E-value=2.3e-14 Score=125.14 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhH
Q psy9637 178 KKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFF 257 (490)
Q Consensus 178 ~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f 257 (490)
.+..+|+++|++.++++.+++|++.+++++ |||++++++++..+. +.|++++...+. .+.+..+.|.|
T Consensus 2 ~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~------Gld~~~~~~vl~~~~-~~s~~~~~~~~~-----~~~~~~~~~~f 69 (122)
T PF14833_consen 2 AGQAMKLANNLLIAANMAALAEALALAEKA------GLDPEQLLDVLSAGS-GGSWMLKNRAPR-----MILNGDFDPGF 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TS-HHHHHHHHHTST-THBHHHHHHHHH-----HHHTTTTCSSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHccCC-cCchHHHhhhhh-----hhhcccCCccc
Confidence 468999999999999999999999999999 999999999998876 567777654221 13455667776
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 258 KDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 258 ~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
+++.+.||++++++.|++.|+|+|+.+.+.++|+.+.+.|+++.|..++.+++
T Consensus 70 --~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 70 --SLDLARKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp --BHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred --hhHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 68899999999999999999999999999999999999999999888776653
No 69
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.55 E-value=2.4e-13 Score=138.58 Aligned_cols=268 Identities=12% Similarity=0.120 Sum_probs=147.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------CCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------GTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|||+|||.|.||..+|..|+++|++|++|+|+++.++.+.+.+.. ..++....++.+.+.. .+|+||++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~Dliiia 78 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD--NATCIILA 78 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC--CCCEEEEE
Confidence 479999999999999999999999999999999988887764211 1123345666666531 38999999
Q ss_pred cCCCchHHHHHHhhcc-cCCCCCEEEcCCCCChHHHHHHH-HHHHHc-cccccccCCCCCccc----cccCC-ccCCCCC
Q psy9637 76 VKAGSAVDDFIDKLVP-LLEKGDIIIDGGNSEYQDTDRRS-KALEAK-GLLYVGCGVSGGEDG----ARYGP-SLMPGGN 147 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~-~l~~g~iiId~s~~~~~~~~~~~-~~l~~~-gi~~ld~~vsGg~~~----a~~G~-~im~GG~ 147 (490)
||+ ..++++++++.+ .+.++..||-..|+....+.... +.+.+. +.+ ...+..||.. +...+ .+..+|.
T Consensus 79 vks-~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~--~~~~~~Gp~~a~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 79 VPT-QQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN--PIAILSGPSFAKEIAEKLPCSIVLAGQ 155 (326)
T ss_pred eCH-HHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC--ceEeecCCcHHHHHHcCCCcEEEEecC
Confidence 999 589999999998 88877777777777633211111 111111 111 0111223332 22333 3333443
Q ss_pred cchHHHHHHHHHhhCCcee---eCCCCCCCCCCHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
Q psy9637 148 PAAWPALKPIFQKLNPSFE---TSAPTPKPQRDKKEFLENIRQALYAS-----------------KIVSYAQGFMLMRQA 207 (490)
Q Consensus 148 ~~a~~~v~~ll~~l~~~~~---~~g~~g~~~g~~a~~~Kll~n~l~~~-----------------~~~~~aE~~~la~~a 207 (490)
.. +..+.+.+.+....+ ...+. ....+.|++.|.+... ...++.|+..++++.
T Consensus 156 ~~--~~~~~l~~~l~~~~~~~~~~~Di-----~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~ 228 (326)
T PRK14620 156 NE--TLGSSLISKLSNENLKIIYSQDI-----IGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAK 228 (326)
T ss_pred CH--HHHHHHHHHHCCCCeEEEecCcc-----hhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 32 233444444444333 22222 1235666666664222 234455666666665
Q ss_pred HHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChh-HHH------HHHHHHHHHHHHHHHHHHcCC
Q psy9637 208 AEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPF-FKD------AIHATQSSWRAVVSQSALLGI 280 (490)
Q Consensus 208 ~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~-f~~------~l~~~~kDl~~~~~~A~~~gv 280 (490)
|.+++++++...-.-|. +...+.....+|..+...+-... ... +.-.....++.+++.++++|+
T Consensus 229 ----G~~~~~~~~~gl~g~gd-----l~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i 299 (326)
T PRK14620 229 ----NGSIDLNTLIGPSCLGD-----LILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNI 299 (326)
T ss_pred ----CCCCCcchhhccchhhh-----hhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCC
Confidence 33447777743211110 11111111112211111110000 000 001233445689999999999
Q ss_pred CchHHHHHHHHHH
Q psy9637 281 PTPAFATALAFYD 293 (490)
Q Consensus 281 ~~P~~~aa~~~~~ 293 (490)
++|+++..++++.
T Consensus 300 ~~P~~~~l~~~~~ 312 (326)
T PRK14620 300 ELPICESIYNLLY 312 (326)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988763
No 70
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.55 E-value=3.4e-13 Score=139.27 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=117.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|||+|.||.+||+.|.++|++|.+|+++++..+.....+.. ..-...+++.++++. +|+||+|||.. .+.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~---aDlVilavP~~-~~~~ 75 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFG-VIDELAADLQRAAAE---ADLIVLAVPVD-ATAA 75 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCC-CCcccccCHHHHhcC---CCEEEEeCCHH-HHHH
Confidence 379999999999999999999999999999887765544333221 000124566676665 99999999995 7889
Q ss_pred HHHhhcc-cCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc-cCCCCCcc-c-------cccCC-ccCCC---CCcch
Q psy9637 85 FIDKLVP-LLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG-CGVSGGED-G-------ARYGP-SLMPG---GNPAA 150 (490)
Q Consensus 85 vl~~l~~-~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld-~~vsGg~~-~-------a~~G~-~im~G---G~~~a 150 (490)
++.++.+ .++++.+|.|.+++........ +.+...+.+|++ .|+.|++. + ...|. .+++. .+++.
T Consensus 76 vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~-~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~ 154 (359)
T PRK06545 76 LLAELADLELKPGVIVTDVGSVKGAILAEA-EALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDA 154 (359)
T ss_pred HHHHHhhcCCCCCcEEEeCccccHHHHHHH-HHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHH
Confidence 9999987 4889999999998875443333 333345678998 48887642 1 22344 33433 56788
Q ss_pred HHHHHHHHHhhCCceeeCCC
Q psy9637 151 WPALKPIFQKLNPSFETSAP 170 (490)
Q Consensus 151 ~~~v~~ll~~l~~~~~~~g~ 170 (490)
++.++++|+.+|..++.+.+
T Consensus 155 ~~~v~~l~~~lGa~~v~~~~ 174 (359)
T PRK06545 155 VAELKDLLSGTGAKFVVLDA 174 (359)
T ss_pred HHHHHHHHHHcCCEEEECCH
Confidence 99999999999998877665
No 71
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.53 E-value=1.8e-12 Score=128.51 Aligned_cols=160 Identities=20% Similarity=0.287 Sum_probs=113.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh--HHHHHHHHcccCCCCeeccCCH-HHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT--AKVDSFLANEAKGTNIIGAHSL-EELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~--~~~~~l~~~g~~~~~i~~~~s~-~e~v~~l~~~dvIil~vp~~~ 80 (490)
+++|+|+|+|.||..+|+.|.++|+.|.+++++. +..+...+.+... ....+. .+.+. .+|+||++||-.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d---~~~~~~~~~~~~---~aD~VivavPi~- 75 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVID---ELTVAGLAEAAA---EADLVIVAVPIE- 75 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCccc---ccccchhhhhcc---cCCEEEEeccHH-
Confidence 4789999999999999999999999987765554 4444433333310 011222 33333 489999999994
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCC--ccccccCC-cc-CCCC--CcchHHH
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGG--EDGARYGP-SL-MPGG--NPAAWPA 153 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg--~~~a~~G~-~i-m~GG--~~~a~~~ 153 (490)
++.++++++.|.+++|.+|+|.+++.........+...+.. +|+.. |++|+ .....++. .+ .++. +.+.+++
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~ 154 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEE 154 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHH
Confidence 89999999999999999999999987544443333333333 88888 77777 34444555 43 4443 3458899
Q ss_pred HHHHHHhhCCceeeCCCC
Q psy9637 154 LKPIFQKLNPSFETSAPT 171 (490)
Q Consensus 154 v~~ll~~l~~~~~~~g~~ 171 (490)
+..+|+.+|++++.+.+.
T Consensus 155 ~~~~~~~~ga~~v~~~~e 172 (279)
T COG0287 155 VKRLWEALGARLVEMDAE 172 (279)
T ss_pred HHHHHHHcCCEEEEcChH
Confidence 999999999998887663
No 72
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.52 E-value=1.7e-13 Score=137.57 Aligned_cols=190 Identities=14% Similarity=0.098 Sum_probs=129.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc--------------ccC--------CCCeeccCCHHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN--------------EAK--------GTNIIGAHSLEE 61 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--------------g~~--------~~~i~~~~s~~e 61 (490)
..+|+|||+|.||..||..|+++|++|++||++++.++...+. +.. ..++...++. +
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 4689999999999999999999999999999999987653221 110 0123344444 3
Q ss_pred HHhhCCCCcEEEEecCCCchH-HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccc-cCCCCCccc
Q psy9637 62 LVKNLKKPRRVMMLVKAGSAV-DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVG-CGVSGGEDG 135 (490)
Q Consensus 62 ~v~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld-~~vsGg~~~ 135 (490)
.++. +|+||.|+|....+ .+++.++.+.++++.+|+..+++. ...++.+.+.. .|+||++ ++++++.+.
T Consensus 82 ~~~~---aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv 156 (291)
T PRK06035 82 SLSD---ADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIEV 156 (291)
T ss_pred HhCC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEEE
Confidence 4444 89999999997654 456678888888888887555443 33444444433 2889998 778877653
Q ss_pred cccCC-ccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9637 136 ARYGP-SLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWK 214 (490)
Q Consensus 136 a~~G~-~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~G 214 (490)
..|+ + ++++++++.++++.++..++++++.+. .-..|+++| .+.|++.+.+. |
T Consensus 157 -~~g~~T-----~~e~~~~~~~~~~~lgk~~v~v~d~pg-----fv~nRl~~~--------~~~ea~~~~~~-------g 210 (291)
T PRK06035 157 -VRAALT-----SEETFNTTVELSKKIGKIPIEVADVPG-----FFTTRFIEG--------WLLEAIRSFEI-------G 210 (291)
T ss_pred -eCCCCC-----CHHHHHHHHHHHHHcCCeEEEeCCCCC-----eeHHHHHHH--------HHHHHHHHHHc-------C
Confidence 3555 3 789999999999999999988876541 123344444 34555555443 4
Q ss_pred -CCHHHHHHHHh
Q psy9637 215 -LNYGGIALMWR 225 (490)
Q Consensus 215 -ld~~~v~~i~~ 225 (490)
.+++++=++++
T Consensus 211 ~a~~~~iD~~~~ 222 (291)
T PRK06035 211 IATIKDIDEMCK 222 (291)
T ss_pred CCCHHHHHHHHh
Confidence 34565555553
No 73
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.51 E-value=4.4e-14 Score=142.39 Aligned_cols=119 Identities=34% Similarity=0.581 Sum_probs=101.7
Q ss_pred cceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCc-chhHHHHHHHHHhcccCCCCC
Q psy9637 348 CCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGE-LDSFLIEITKDILKFKDTDGA 426 (490)
Q Consensus 348 c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~-~~s~l~~~~~~~~~~~~~~~~ 426 (490)
++.|+|+.|+||++||+||.+.+++|++++|++.++++ .|+ ..|+.++++.|+.|+ ++||+++....++...+
T Consensus 158 ~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~-~g~-~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~---- 231 (299)
T PRK12490 158 GYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDK-SDF-DFDVEDVARLWRNGSVIRSWLLDLTVKALAEDP---- 231 (299)
T ss_pred cEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc-CCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCC----
Confidence 57799999999999999999999999999999999997 561 128999999999876 99999999988886422
Q ss_pred cchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCch
Q psy9637 427 PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFD 473 (490)
Q Consensus 427 ~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~ 473 (490)
+ ...+.+...+.|+.+|+++.|.+.++|+|+++.+++.|+.+..+.
T Consensus 232 ~-~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~ 277 (299)
T PRK12490 232 K-LAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDD 277 (299)
T ss_pred C-hhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccC
Confidence 1 234556666888999999999999999999999999999987764
No 74
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.51 E-value=5.4e-13 Score=133.34 Aligned_cols=195 Identities=16% Similarity=0.202 Sum_probs=131.3
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHH-----------HHHcccCC--------CCeeccCCHHH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDS-----------FLANEAKG--------TNIIGAHSLEE 61 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~g~~~--------~~i~~~~s~~e 61 (490)
|+ ++||+|||+|.||.++|..|+++|++|++||+++++++. +.+.+... .++..+++.++
T Consensus 1 ~~-~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 79 (282)
T PRK05808 1 MG-IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD 79 (282)
T ss_pred CC-ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 54 468999999999999999999999999999999998752 33333110 13445666654
Q ss_pred HHhhCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH----Hccccccc-cCCCCCccc
Q psy9637 62 LVKNLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE----AKGLLYVG-CGVSGGEDG 135 (490)
Q Consensus 62 ~v~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~----~~gi~~ld-~~vsGg~~~ 135 (490)
+++ +|+||+|+|....++ +++.++.+.++++.+|+..+++.+.. .+.+.+. --|.||.. +++..+.+
T Consensus 80 -~~~---aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~--~la~~~~~~~r~ig~h~~~P~~~~~~ve- 152 (282)
T PRK05808 80 -LKD---ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT--ELAAATKRPDKVIGMHFFNPVPVMKLVE- 152 (282)
T ss_pred -hcc---CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHHhhCCCcceEEeeccCCcccCccEE-
Confidence 444 899999999865655 77788989898888774444433222 4444442 23677776 45555553
Q ss_pred cccCCccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-
Q psy9637 136 ARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWK- 214 (490)
Q Consensus 136 a~~G~~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~G- 214 (490)
...| .+.+++.++.++++|+.+|..+++++... | .. ........++|++.+.+. |
T Consensus 153 v~~g----~~t~~e~~~~~~~l~~~lGk~pv~~~d~~---g---~i-------~~Ri~~~~~~ea~~~~~~-------gv 208 (282)
T PRK05808 153 IIRG----LATSDATHEAVEALAKKIGKTPVEVKNAP---G---FV-------VNRILIPMINEAIFVLAE-------GV 208 (282)
T ss_pred EeCC----CCCCHHHHHHHHHHHHHcCCeeEEecCcc---C---hH-------HHHHHHHHHHHHHHHHHh-------CC
Confidence 2222 45688999999999999999988876542 1 11 122344556777777765 4
Q ss_pred CCHHHHHHHHhcc
Q psy9637 215 LNYGGIALMWRGG 227 (490)
Q Consensus 215 ld~~~v~~i~~~g 227 (490)
.+++++=.+++.|
T Consensus 209 ~~~~diD~~~~~g 221 (282)
T PRK05808 209 ATAEDIDEGMKLG 221 (282)
T ss_pred CCHHHHHHHHHhC
Confidence 4566666665543
No 75
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.50 E-value=9.9e-14 Score=129.89 Aligned_cols=113 Identities=23% Similarity=0.374 Sum_probs=86.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------------CCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------------GTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------------~~~i~~~~s~~e~v~~l~~~ 69 (490)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+.+.... ..++.++++..+.+.. +
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~---a 77 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKD---A 77 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH----
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhc---c
Confidence 589999999999999999999999999999999999887642111 3567788899998877 8
Q ss_pred cEEEEecCCCc---------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHH-HHHHHc
Q psy9637 70 RRVMMLVKAGS---------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRS-KALEAK 120 (490)
Q Consensus 70 dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~-~~l~~~ 120 (490)
|++|+|||++. .++++++.+.+.++++++||.-||..|.++.+.. ..+++.
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKR 138 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHH
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhh
Confidence 99999998753 4778889999999999999999999999999776 444443
No 76
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.49 E-value=1.8e-12 Score=131.48 Aligned_cols=260 Identities=13% Similarity=0.078 Sum_probs=150.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-----CC----CeeccCCHHHHHhhCCCCcEEE
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-----GT----NIIGAHSLEELVKNLKKPRRVM 73 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~~----~i~~~~s~~e~v~~l~~~dvIi 73 (490)
.+|+|+|||+|.||..+|..|+++||+|+++.|++. +.+.+.+.. +. .+...+++++ ++.+|+||
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~D~vi 77 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAED----MPPCDWVL 77 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhh----cCCCCEEE
Confidence 357999999999999999999999999999999863 444444321 10 0111223322 23489999
Q ss_pred EecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc----cccccccCCCCCccccccCC-ccCC---C
Q psy9637 74 MLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK----GLLYVGCGVSGGEDGARYGP-SLMP---G 145 (490)
Q Consensus 74 l~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~----gi~~ld~~vsGg~~~a~~G~-~im~---G 145 (490)
+|||.. ++.++++.+.+.+.++.+|+...|+.. ......+.+.+. |+.++.+...+...-...+. .+.+ .
T Consensus 78 lavK~~-~~~~~~~~l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~ 155 (313)
T PRK06249 78 VGLKTT-ANALLAPLIPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHS 155 (313)
T ss_pred EEecCC-ChHhHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCC
Confidence 999995 788899999999988889999988763 222233333221 44445444433221111222 2222 2
Q ss_pred CC------cchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHH---------------------HHHHHHH
Q psy9637 146 GN------PAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYA---------------------SKIVSYA 198 (490)
Q Consensus 146 G~------~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~---------------------~~~~~~a 198 (490)
|+ .+..+.+..+|+..+..+...... ....+.|++.|+.+. .....+.
T Consensus 156 ~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di-----~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~ 230 (313)
T PRK06249 156 GPAADDGITARVEEGAALFRAAGIDSQAMPDL-----AQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMA 230 (313)
T ss_pred CCcccchHHHHHHHHHHHHHhCCCCceeCchH-----HHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHH
Confidence 32 245566777787766654433332 245566766665332 2333456
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHH---hcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHH
Q psy9637 199 QGFMLMRQAAEIHGWKLNYGGIALMW---RGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQS 275 (490)
Q Consensus 199 E~~~la~~a~~~~~~Gld~~~v~~i~---~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A 275 (490)
|+..++++. |+.++.+.+.+++ ....-.+|.|++++ ..+-..+++.. ...++++|
T Consensus 231 E~~~va~a~----Gi~~~~~~~~~~~~~~~~~~~~~sSM~qD~---------------~~gr~tEid~i---~G~vv~~a 288 (313)
T PRK06249 231 EVIQGAAAC----GHTLPEGYADHMLAVTERMPDYRPSMYHDF---------------EEGRPLELEAI---YANPLAAA 288 (313)
T ss_pred HHHHHHHhc----CCCCChhHHHHHHHHhhcCCCCCChHHHHH---------------HCCCcccHHHH---hhHHHHHH
Confidence 666666665 3344443332222 11111112222221 11111122222 46789999
Q ss_pred HHcCCCchHHHHHHHHHHHHHh
Q psy9637 276 ALLGIPTPAFATALAFYDGYRS 297 (490)
Q Consensus 276 ~~~gv~~P~~~aa~~~~~~~~~ 297 (490)
+++|+++|..+..++.++....
T Consensus 289 ~~~Gi~~P~~~~l~~~l~~~e~ 310 (313)
T PRK06249 289 RAAGCAMPRVEMLYQALEFLDR 310 (313)
T ss_pred HHhCCCCcHHHHHHHHHHHHHh
Confidence 9999999999999998876643
No 77
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.48 E-value=3e-12 Score=131.66 Aligned_cols=267 Identities=10% Similarity=0.049 Sum_probs=170.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-------CeEEEEeCChH-----HHHHHHHcccC---------CCCeeccCCHHHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-------FTVVAYNRTTA-----KVDSFLANEAK---------GTNIIGAHSLEEL 62 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~g~~---------~~~i~~~~s~~e~ 62 (490)
++||+|||.|.||.+||..|+++| |+|.+|.|+++ .++.+.+...+ +.++..++++.++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 478999999999999999999998 89999999976 35666543322 2456678888888
Q ss_pred HhhCCCCcEEEEecCCCchHHHHHHhhcc--cCCCCCEEEcCCCCChHHHH--H-HHHHHHHc-cccccccCCCCCcccc
Q psy9637 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVP--LLEKGDIIIDGGNSEYQDTD--R-RSKALEAK-GLLYVGCGVSGGEDGA 136 (490)
Q Consensus 63 v~~l~~~dvIil~vp~~~~v~~vl~~l~~--~l~~g~iiId~s~~~~~~~~--~-~~~~l~~~-gi~~ld~~vsGg~~~a 136 (490)
++. +|+|+++||+ +.++++++++.+ .+.++.+||.++.+...++. . ..+.+.+. +. .+.+..||.-|
T Consensus 91 v~~---aDiIvlAVPs-q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~---~~~~LsGPs~A 163 (365)
T PTZ00345 91 VED---ADLLIFVIPH-QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI---PCCALSGANVA 163 (365)
T ss_pred Hhc---CCEEEEEcCh-HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC---CeEEEECCCHH
Confidence 877 8999999999 689999999998 78777788887766543332 1 22333221 21 34445666555
Q ss_pred c----cCC-ccCC-CCCcchHHHHHHHHHhhCCceeeCCC-CCCCCCCHHHHHHH--------------HHHHHHHHHHH
Q psy9637 137 R----YGP-SLMP-GGNPAAWPALKPIFQKLNPSFETSAP-TPKPQRDKKEFLEN--------------IRQALYASKIV 195 (490)
Q Consensus 137 ~----~G~-~im~-GG~~~a~~~v~~ll~~l~~~~~~~g~-~g~~~g~~a~~~Kl--------------l~n~l~~~~~~ 195 (490)
. .-+ .+.+ +-+.+..+.++.+|+.=.-+++...+ .|. +-+-++|. =.|+-.+....
T Consensus 164 ~Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~Gv---El~galKNviAIa~Gi~dGl~~G~N~kaalitr 240 (365)
T PTZ00345 164 NDVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGV---EVCGALKNIIALAAGFCDGLGLGTNTKSAIIRI 240 (365)
T ss_pred HHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccc---hhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Confidence 3 233 3444 44666777777777632112222111 111 11122332 25677777788
Q ss_pred HHHHHHHHHHHHHHHhCCC--CCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCCh----hHHHHH--------
Q psy9637 196 SYAQGFMLMRQAAEIHGWK--LNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDP----FFKDAI-------- 261 (490)
Q Consensus 196 ~~aE~~~la~~a~~~~~~G--ld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~----~f~~~l-------- 261 (490)
+++|+..++++. | -++++++..-.-| ++.-.+.+ .+|.++...+-.. .+...+
T Consensus 241 gl~Em~~l~~a~------g~~~~~~T~~glaG~G-----DLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~ 307 (365)
T PTZ00345 241 GLEEMKLFGKIF------FPNVMDETFFESCGLA-----DLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQK 307 (365)
T ss_pred HHHHHHHHHHHh------CCCCCccchhccchHh-----HhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcE
Confidence 888888888888 5 4777776553322 22222222 3444433332210 121111
Q ss_pred HHHHHHHHHHHHHHHHcCC--CchHHHHHHHHHH
Q psy9637 262 HATQSSWRAVVSQSALLGI--PTPAFATALAFYD 293 (490)
Q Consensus 262 ~~~~kDl~~~~~~A~~~gv--~~P~~~aa~~~~~ 293 (490)
-......+.+.+.++++++ .+|+++++++++.
T Consensus 308 vEG~~t~~~v~~l~~~~~i~~~~Pi~~~vy~il~ 341 (365)
T PTZ00345 308 LQGTVTLKEVYEVLESHDLKKEFPLFTVTYKIAF 341 (365)
T ss_pred echHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 2356778889999999999 8999999998874
No 78
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.47 E-value=2.7e-12 Score=129.88 Aligned_cols=195 Identities=14% Similarity=0.075 Sum_probs=133.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-----------ccc----CCCCeeccCCHHHHHhhCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA-----------NEA----KGTNIIGAHSLEELVKNLKK 68 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~----~~~~i~~~~s~~e~v~~l~~ 68 (490)
.++|+|||+|.||..||.+++.+||+|++||++++..+.+.+ .+. ...++..+++++++++.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~--- 83 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD--- 83 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC---
Confidence 368999999999999999999999999999999987665432 111 01345667888888776
Q ss_pred CcEEEEecCCCchHHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCccccccCCccC
Q psy9637 69 PRRVMMLVKAGSAVDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARYGPSLM 143 (490)
Q Consensus 69 ~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~G~~im 143 (490)
+|+|+.++|....++..+ .++.+.++++. ||.++||. ....+..+.+.. -|.||+..|-.-..- -++
T Consensus 84 aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~-l~~s~la~~~~~p~R~~g~HffnP~~~~pLV------EVv 155 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSG-LLPTDFYARATHPERCVVGHPFNPVYLLPLV------EVL 155 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc-cCHHHHHHhcCCcccEEEEecCCccccCceE------EEe
Confidence 999999999998888655 77777787766 66777764 344444444432 266666554211100 123
Q ss_pred CC--CCcchHHHHHHHHHhhCCceeeCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy9637 144 PG--GNPAAWPALKPIFQKLNPSFETSA-PTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGI 220 (490)
Q Consensus 144 ~G--G~~~a~~~v~~ll~~l~~~~~~~g-~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v 220 (490)
.| -++++++++..+++.++...+.+. +.. +..++ -...+.+.|++.+.+.= ..+++++
T Consensus 156 ~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~p------GFi~N-------Rl~~a~~~EA~~lv~eG------vas~edI 216 (321)
T PRK07066 156 GGERTAPEAVDAAMGIYRALGMRPLHVRKEVP------GFIAD-------RLLEALWREALHLVNEG------VATTGEI 216 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEeEecCCCCc------cHHHH-------HHHHHHHHHHHHHHHhC------CCCHHHH
Confidence 33 367899999999999998776653 331 12222 22345667787777763 4678888
Q ss_pred HHHHhccc
Q psy9637 221 ALMWRGGC 228 (490)
Q Consensus 221 ~~i~~~g~ 228 (490)
=.+++.|.
T Consensus 217 D~a~~~g~ 224 (321)
T PRK07066 217 DDAIRFGA 224 (321)
T ss_pred HHHHHhCC
Confidence 77777664
No 79
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.47 E-value=2.5e-12 Score=131.28 Aligned_cols=263 Identities=11% Similarity=0.057 Sum_probs=166.4
Q ss_pred cEEEEcccHHHHHHHHHHHHCC--------CeEEEEeC-----ChHHHHHHHHcccC---------CCCeeccCCHHHHH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHG--------FTVVAYNR-----TTAKVDSFLANEAK---------GTNIIGAHSLEELV 63 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G--------~~V~v~dr-----~~~~~~~l~~~g~~---------~~~i~~~~s~~e~v 63 (490)
||+|||.|.+|.+||..|+++| |+|.+|.| +++..+.+.+...+ +.+++.++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 55555555433211 23455678888888
Q ss_pred hhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHH--HHHHH-HHHHHccccccccCCCCCccccc---
Q psy9637 64 KNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQD--TDRRS-KALEAKGLLYVGCGVSGGEDGAR--- 137 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~--~~~~~-~~l~~~gi~~ld~~vsGg~~~a~--- 137 (490)
+. +|+||++||+ +.++++++.+.++++++.++|.++.+.... +..+. +.+.+. + -..+.+..||.-|.
T Consensus 81 ~~---ADiIIlAVPs-~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~-l-~~~~~~lsGP~~A~Eva 154 (342)
T TIGR03376 81 KG---ADILVFVIPH-QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEE-L-GIPCGVLSGANLANEVA 154 (342)
T ss_pred hc---CCEEEEECCh-HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHH-h-CCCeEEeeCcchHHHHH
Confidence 77 8999999999 599999999999999889999988776554 43333 333321 1 12345556666553
Q ss_pred cC-C-ccCCCC-C----cchHHHHHHHHHhhCCceee---CCC-CCCCCCCHHHHHHHH--------------HHHHHHH
Q psy9637 138 YG-P-SLMPGG-N----PAAWPALKPIFQKLNPSFET---SAP-TPKPQRDKKEFLENI--------------RQALYAS 192 (490)
Q Consensus 138 ~G-~-~im~GG-~----~~a~~~v~~ll~~l~~~~~~---~g~-~g~~~g~~a~~~Kll--------------~n~l~~~ 192 (490)
.| + .+.+++ + .+..+.++.+|+ .+++. ..+ .|. +-+-++|.+ .|+-.+.
T Consensus 155 ~~~pt~~~ia~~~~~~~~~~a~~~~~lf~---~~~frv~~s~Dv~Gv---El~galKNv~AIa~Gi~~Gl~~g~N~~aal 228 (342)
T TIGR03376 155 KEKFSETTVGYRDPADFDVDARVLKALFH---RPYFRVNVVDDVAGV---EIAGALKNVVAIAAGFVDGLGWGDNAKAAV 228 (342)
T ss_pred cCCCceEEEEeCCCcchHHHHHHHHHHhC---CCCEEEEEcCCcccc---hhhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 33 3 444444 4 466677777776 33332 111 111 111223332 4777777
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHH--HHHHHHhcccchhhHhHhHhHHhhccCcccccccCC--hhHHHHHH------
Q psy9637 193 KIVSYAQGFMLMRQAAEIHGWKLNYG--GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLD--PFFKDAIH------ 262 (490)
Q Consensus 193 ~~~~~aE~~~la~~a~~~~~~Gld~~--~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~--~~f~~~l~------ 262 (490)
...++.|+..++++. |-+++ +++..-.-| ++.-.+.. .+|..+...+-. -.+...++
T Consensus 229 itrgl~Em~~l~~~~------g~~~~~~T~~gl~G~G-----DL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~ 295 (342)
T TIGR03376 229 MRRGLLEMIKFARMF------FPTGEVTFTFESCGVA-----DLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQ 295 (342)
T ss_pred HHHHHHHHHHHHHHh------CCCCCCCcccccchhh-----hhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCc
Confidence 888888999999988 76655 555443222 12222111 233333222211 11111111
Q ss_pred --HHHHHHHHHHHHHHHcCCC--chHHHHHHHHHH
Q psy9637 263 --ATQSSWRAVVSQSALLGIP--TPAFATALAFYD 293 (490)
Q Consensus 263 --~~~kDl~~~~~~A~~~gv~--~P~~~aa~~~~~ 293 (490)
......+.+.+.+++.++. +|+++++++++.
T Consensus 296 ~vEG~~t~~~~~~l~~~~~i~~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 296 SLQGVATAKEVHELLKNKNKDDEFPLFEAVYQILY 330 (342)
T ss_pred EEeeHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHh
Confidence 1256677888999999999 999999998874
No 80
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.46 E-value=9.5e-12 Score=123.60 Aligned_cols=201 Identities=9% Similarity=0.085 Sum_probs=128.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----eEEEEeCChHHHHHHHH-cccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF----TVVAYNRTTAKVDSFLA-NEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~-~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+||||||+|+||.+|+.+|.++|+ +|++|||++++.+.+.+ .+. ..+.+..+++.. +|+||+|||+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~-----~~~~~~~e~~~~---aDiIiLavkP- 73 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGI-----TITTNNNEVANS---ADILILSIKP- 73 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCc-----EEeCCcHHHHhh---CCEEEEEeCh-
Confidence 589999999999999999999885 69999999999888775 332 356788888876 8999999997
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc-ccccCCCCCccccccCCc-cCCCC--CcchHHHHH
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL-YVGCGVSGGEDGARYGPS-LMPGG--NPAAWPALK 155 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~-~ld~~vsGg~~~a~~G~~-im~GG--~~~a~~~v~ 155 (490)
..+.++++++.+.++++.+||+.-.+...+..+ +.+.. ..+ .--+|- .+.....|.+ +..+. +++..+.++
T Consensus 74 ~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~--~~l~~-~~~vvR~MPN--~~~~vg~g~t~~~~~~~~~~~~~~~v~ 148 (272)
T PRK12491 74 DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTE--NEFDR-KLKVIRVMPN--TPVLVGEGMSALCFNEMVTEKDIKEVL 148 (272)
T ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHH--HhcCC-CCcEEEECCC--hHHHHcCceEEEEeCCCCCHHHHHHHH
Confidence 699999999999888889999987765433332 22211 111 111232 1122234542 33322 345667899
Q ss_pred HHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhh
Q psy9637 156 PIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYA---SKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRS 232 (490)
Q Consensus 156 ~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~---~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s 232 (490)
.+|+.+|..+.. .+. .++.+ -++.+ +.+..+.|++.-+-.. +|++.++..++......+.+
T Consensus 149 ~lf~~~G~~~~~-~E~---------~~d~~-talsgsgPAf~~~~~eal~~a~v~-----~Gl~~~~A~~l~~~t~~G~a 212 (272)
T PRK12491 149 NIFNIFGQTEVV-NEK---------LMDVV-TSISGSSPAYVYMFIEAMADAAVL-----GGMPRKQAYKFAAQAVLGSA 212 (272)
T ss_pred HHHHcCCCEEEE-cHH---------HhhhH-HHhccCcHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHH
Confidence 999999986543 111 11111 11111 2233333433332222 39999998888765544444
Q ss_pred HhH
Q psy9637 233 VFL 235 (490)
Q Consensus 233 ~~l 235 (490)
.++
T Consensus 213 ~ll 215 (272)
T PRK12491 213 KMV 215 (272)
T ss_pred HHH
Confidence 444
No 81
>PLN02256 arogenate dehydrogenase
Probab=99.46 E-value=9.2e-12 Score=125.45 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=113.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++|+|||+|.||..+|..|.+.|++|++||+++.. +...+.+. ....+.++++.. .+|+||+|+|.. .+.
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv-----~~~~~~~e~~~~--~aDvVilavp~~-~~~ 106 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGV-----SFFRDPDDFCEE--HPDVVLLCTSIL-STE 106 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCC-----eeeCCHHHHhhC--CCCEEEEecCHH-HHH
Confidence 468999999999999999999999999999999643 33333332 246777777531 389999999985 889
Q ss_pred HHHHhh-cccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCccc--cccCC-ccCC-------CCCcchH
Q psy9637 84 DFIDKL-VPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGEDG--ARYGP-SLMP-------GGNPAAW 151 (490)
Q Consensus 84 ~vl~~l-~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~~--a~~G~-~im~-------GG~~~a~ 151 (490)
+++.++ .+.++++.+|+|.+++...... ..+.....+..|+.+ |+.|...+ ...+. .+.. +.+++++
T Consensus 107 ~vl~~l~~~~l~~~~iviDv~SvK~~~~~-~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 185 (304)
T PLN02256 107 AVLRSLPLQRLKRSTLFVDVLSVKEFPKN-LLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARC 185 (304)
T ss_pred HHHHhhhhhccCCCCEEEecCCchHHHHH-HHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHH
Confidence 999888 6778899999999996533333 333322335667766 77666543 23344 2222 2256788
Q ss_pred HHHHHHHHhhCCceeeCCCC
Q psy9637 152 PALKPIFQKLNPSFETSAPT 171 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g~~ 171 (490)
+.++.+++.+|++++.+.+.
T Consensus 186 ~~l~~l~~~lGa~v~~~~~e 205 (304)
T PLN02256 186 ERFLDIFEEEGCRMVEMSCE 205 (304)
T ss_pred HHHHHHHHHCCCEEEEeCHH
Confidence 99999999999998877653
No 82
>PLN02712 arogenate dehydrogenase
Probab=99.45 E-value=9.6e-13 Score=145.30 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=117.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++|||||+|.||..+|++|.+.|++|++|||+... +...+.|. ..+.++++++.. .+|+||+|||. ..+.
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv-----~~~~~~~el~~~--~aDvVILavP~-~~~~ 439 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGV-----SYFSDADDLCEE--HPEVILLCTSI-LSTE 439 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCC-----eEeCCHHHHHhc--CCCEEEECCCh-HHHH
Confidence 479999999999999999999999999999999653 44443332 246788887652 27999999997 5889
Q ss_pred HHHHhhcc-cCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc-ccCCCCCccccccC---Cc-----cCCCCCcchHHH
Q psy9637 84 DFIDKLVP-LLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV-GCGVSGGEDGARYG---PS-----LMPGGNPAAWPA 153 (490)
Q Consensus 84 ~vl~~l~~-~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l-d~~vsGg~~~a~~G---~~-----im~GG~~~a~~~ 153 (490)
++++++.+ .+++|.+|+|++++. ....+..+.+...+..|+ ..|++|...+ ..| .. .+++++.+..++
T Consensus 440 ~vi~~l~~~~lk~g~ivvDv~SvK-~~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~ 517 (667)
T PLN02712 440 KVLKSLPFQRLKRSTLFVDVLSVK-EFPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSR 517 (667)
T ss_pred HHHHHHHHhcCCCCcEEEECCCcc-HHHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHH
Confidence 99988875 678899999999987 444555555556678888 7799988765 233 12 345666666555
Q ss_pred H---HHHHHhhCCceeeCCC
Q psy9637 154 L---KPIFQKLNPSFETSAP 170 (490)
Q Consensus 154 v---~~ll~~l~~~~~~~g~ 170 (490)
+ ..+++.+|++++.+.+
T Consensus 518 ~~~l~~l~~~lGa~vv~ms~ 537 (667)
T PLN02712 518 CDSFLDIFAREGCRMVEMSC 537 (667)
T ss_pred HHHHHHHHHHcCCEEEEeCH
Confidence 5 5889999998887665
No 83
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.44 E-value=1.7e-12 Score=131.45 Aligned_cols=179 Identities=13% Similarity=0.107 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHCCCeEEEEeCChHH-------HHH-----------HHHcccC--------CCCeeccCC--HHHHHhhC
Q psy9637 15 MGQNLILNMNDHGFTVVAYNRTTAK-------VDS-----------FLANEAK--------GTNIIGAHS--LEELVKNL 66 (490)
Q Consensus 15 MG~~lA~~L~~~G~~V~v~dr~~~~-------~~~-----------l~~~g~~--------~~~i~~~~s--~~e~v~~l 66 (490)
||..||..++.+|++|++||++++. ++. +.+.+.. ..+++.+.+ +.++++.
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~- 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD- 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc-
Confidence 8999999999999999999999842 111 1122211 124555544 5566666
Q ss_pred CCCcEEEEecCCCchHHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHH----HHccccccccC-------CCCCcc
Q psy9637 67 KKPRRVMMLVKAGSAVDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKAL----EAKGLLYVGCG-------VSGGED 134 (490)
Q Consensus 67 ~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l----~~~gi~~ld~~-------vsGg~~ 134 (490)
+|+||.|||.+..++..+ .++.+.++++.|| +||+++....++.+.+ +..|+||++.| |++|+
T Consensus 80 --aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~- 154 (314)
T PRK08269 80 --ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD- 154 (314)
T ss_pred --CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC-
Confidence 999999999999888766 6777888888877 5666666666676666 33589999999 77766
Q ss_pred ccccCCccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9637 135 GARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWK 214 (490)
Q Consensus 135 ~a~~G~~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~G 214 (490)
++++++++++.++++.++..++++++.+ | +.+.......++|++.++++. +
T Consensus 155 ----------~t~~e~~~~~~~ll~~lGk~~v~v~d~~---G----------fi~nri~~~~l~EAl~l~e~g------~ 205 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIGKVPVVCGPSP---G----------YIVPRIQALAMNEAARMVEEG------V 205 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCcEEEecCCC---C----------cchHHHHHHHHHHHHHHHHhC------C
Confidence 5688999999999999999999988753 1 245677788999999999998 8
Q ss_pred CCHHHHHHHHhccc
Q psy9637 215 LNYGGIALMWRGGC 228 (490)
Q Consensus 215 ld~~~v~~i~~~g~ 228 (490)
++++++-++++.|.
T Consensus 206 ~~~e~iD~a~~~g~ 219 (314)
T PRK08269 206 ASAEDIDKAIRTGF 219 (314)
T ss_pred CCHHHHHHHHHhCC
Confidence 99999999987554
No 84
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.44 E-value=6.8e-12 Score=125.74 Aligned_cols=192 Identities=16% Similarity=0.220 Sum_probs=127.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcc------------cC--------CCCeeccCCHHHHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANE------------AK--------GTNIIGAHSLEELV 63 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g------------~~--------~~~i~~~~s~~e~v 63 (490)
+++|+|||+|.||..||..|+++|++|++||++++.+++..+.. .. ..++..++++++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 46899999999999999999999999999999998776654320 00 12455678888877
Q ss_pred hhCCCCcEEEEecCCCchH-HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCcccccc
Q psy9637 64 KNLKKPRRVMMLVKAGSAV-DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARY 138 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~ 138 (490)
+. +|+||.|+|....+ ..+++++.+.++++.+|++.+++.+.. +..+.+.. .|.||.+.+ . .
T Consensus 83 ~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~--~~~~~~~~~~r~vg~Hf~~p~-----~---~ 149 (287)
T PRK08293 83 KD---ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS--QFAEATGRPEKFLALHFANEI-----W---K 149 (287)
T ss_pred cC---CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH--HHHhhcCCcccEEEEcCCCCC-----C---c
Confidence 66 99999999986544 566788888888888886555544332 22222221 244553332 1 2
Q ss_pred CC--ccC--CCCCcchHHHHHHHHHhhCCceeeCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy9637 139 GP--SLM--PGGNPAAWPALKPIFQKLNPSFETSA-PTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGW 213 (490)
Q Consensus 139 G~--~im--~GG~~~a~~~v~~ll~~l~~~~~~~g-~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~ 213 (490)
.+ -++ .+.++++++++.++++.++...+.+. +.. | ..+. -.....++|++.+.+.-
T Consensus 150 ~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~p---g---fi~n-------Ri~~~~~~ea~~l~~~g------ 210 (287)
T PRK08293 150 NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQP---G---YILN-------SLLVPFLSAALALWAKG------ 210 (287)
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCC---C---HhHH-------HHHHHHHHHHHHHHHcC------
Confidence 22 233 34678999999999999998876664 321 1 1222 12344567777776662
Q ss_pred CCCHHHHHHHHhcc
Q psy9637 214 KLNYGGIALMWRGG 227 (490)
Q Consensus 214 Gld~~~v~~i~~~g 227 (490)
-.+++++=.+++.+
T Consensus 211 ~a~~~~iD~a~~~~ 224 (287)
T PRK08293 211 VADPETIDKTWMIA 224 (287)
T ss_pred CCCHHHHHHHHHhc
Confidence 35677776666433
No 85
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.43 E-value=6.9e-12 Score=126.77 Aligned_cols=266 Identities=13% Similarity=0.081 Sum_probs=153.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcc-cC----CCCe--ec-cCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANE-AK----GTNI--IG-AHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g-~~----~~~i--~~-~~s~~e~v~~l~~~dvIil~ 75 (490)
.|||+|||+|.||..+|..|.++|++|++++|+++.++.+.+.+ .. +... .. ..+. +.++..|+||+|
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~----~~~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETA----DAAEPIHRLLLA 77 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCc----ccccccCEEEEE
Confidence 36899999999999999999999999999999988888877542 21 1100 00 1111 122347999999
Q ss_pred cCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc----cccccccCCCCCccccccCC-ccCCCC-Ccc
Q psy9637 76 VKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK----GLLYVGCGVSGGEDGARYGP-SLMPGG-NPA 149 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~----gi~~ld~~vsGg~~~a~~G~-~im~GG-~~~ 149 (490)
|+.. ++++++..+.+.+.++.+||-..|+.... ....+.+... |+.++.+..-+.-.-...|. .+.+|. +.+
T Consensus 78 vK~~-~~~~al~~l~~~l~~~t~vv~lQNGv~~~-e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~ 155 (305)
T PRK05708 78 CKAY-DAEPAVASLAHRLAPGAELLLLQNGLGSQ-DAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNP 155 (305)
T ss_pred CCHH-hHHHHHHHHHhhCCCCCEEEEEeCCCCCH-HHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCc
Confidence 9995 78899999999999999999999987432 2222222211 33333332222111111222 222332 224
Q ss_pred hHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHh
Q psy9637 150 AWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYAS------------------KIVSYAQGFMLMRQAAEIH 211 (490)
Q Consensus 150 a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~------------------~~~~~aE~~~la~~a~~~~ 211 (490)
..+++.++|..-+..+...... ....+.|++.|+.... ....+.|...++++.
T Consensus 156 ~~~~l~~~l~~ag~~~~~~~di-----~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~---- 226 (305)
T PRK05708 156 TAPAWLDDLREAGIPHEWTVDI-----LTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRC---- 226 (305)
T ss_pred chHHHHHHHHhcCCCCccCHHH-----HHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHc----
Confidence 4566677777655433222111 2456777776663322 233446666666665
Q ss_pred CCCCCHHHHHHHH----hcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHH
Q psy9637 212 GWKLNYGGIALMW----RGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287 (490)
Q Consensus 212 ~~Gld~~~v~~i~----~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~a 287 (490)
++.++...+.+.+ ....-..|.|++++... . + .+++.. ...++++|+++|+|+|..+.
T Consensus 227 G~~~~~~~~~~~~~~~~~~~~~~~sSM~qD~~~g----R--------~---tEid~i---~G~vvr~a~~~Gv~~P~~~~ 288 (305)
T PRK05708 227 GQPAAAANLHEEVQRVIQATAANYSSMYQDVRAG----R--------R---TEISYL---LGYACRAADRHGLPLPRLQH 288 (305)
T ss_pred CCCccHHHHHHHHHHHHHhccCCCcHHHHHHHcC----C--------c---eeehhh---hhHHHHHHHHcCCCCchHHH
Confidence 3333433333322 11111122222222110 0 0 011111 35689999999999999999
Q ss_pred HHHHHHH-HHhCCChh
Q psy9637 288 ALAFYDG-YRSKRLPA 302 (490)
Q Consensus 288 a~~~~~~-~~~~g~~~ 302 (490)
.++..+. .+++|+|.
T Consensus 289 l~~~v~~~~~~~~~~~ 304 (305)
T PRK05708 289 LQQRLVAHLRARGLPT 304 (305)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 9987775 55677774
No 86
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.37 E-value=4.1e-12 Score=122.28 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=108.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-----CC--CeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-----GT--NIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~~--~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|||+||| +|.||..|+..|+++||+|++|+|++++.+.+...... +. ++ ...+..+.+.. +|+||+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~-~~~~~~ea~~~---aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKV-TGADNAEAAKR---ADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceE-EEeChHHHHhc---CCEEEEEC
Confidence 5899997 89999999999999999999999999998877653210 00 11 12355666665 89999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCChHH---------------HHHHHHHHHH-----ccccccccCCCCCcccc
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQD---------------TDRRSKALEA-----KGLLYVGCGVSGGEDGA 136 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~---------------~~~~~~~l~~-----~gi~~ld~~vsGg~~~a 136 (490)
|.. .+.+++.++.+.+. +++|||++|....+ ++...+.+.. +.+..+.+.+..+. ..
T Consensus 77 p~~-~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~-~~ 153 (219)
T TIGR01915 77 PWD-HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDV-DD 153 (219)
T ss_pred CHH-HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCC-CC
Confidence 994 78888888877665 58999999876531 1222222221 12223333333332 22
Q ss_pred ccCC-ccCCCCCcchHHHHHHHHHhh-CCceeeCCCC
Q psy9637 137 RYGP-SLMPGGNPAAWPALKPIFQKL-NPSFETSAPT 171 (490)
Q Consensus 137 ~~G~-~im~GG~~~a~~~v~~ll~~l-~~~~~~~g~~ 171 (490)
..+. .+++|-|+++.+.+..+.+.+ |-..+..|+.
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l 190 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPL 190 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCch
Confidence 2234 444555567788899999999 8887777774
No 87
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.36 E-value=6.4e-11 Score=119.52 Aligned_cols=260 Identities=19% Similarity=0.210 Sum_probs=160.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---CCC-----eeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---GTN-----IIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---~~~-----i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|||.|+|+|.||..++..|+++|++|+++.|++. ++++.+.|.. ... ...+.+.+ .+..+|+||++|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~----~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAE----ALGPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChh----hcCCCCEEEEEe
Confidence 5899999999999999999999999999999866 8888886543 111 11112222 233489999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc----cccccccCCCCCcc--ccccCC---ccCCCCC
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK----GLLYVGCGVSGGED--GARYGP---SLMPGGN 147 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~----gi~~ld~~vsGg~~--~a~~G~---~im~GG~ 147 (490)
++. ++++++..+.+.+.+...|+-..|+..... ++.+..... |+.+..+--.|... ....|. ..+.|++
T Consensus 76 Ka~-q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~ 153 (307)
T COG1893 76 KAY-QLEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGR 153 (307)
T ss_pred ccc-cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCc
Confidence 995 999999999999999999998888874333 333333322 34343333222111 112233 3355666
Q ss_pred cchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Q psy9637 148 PAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYA---------------------SKIVSYAQGFMLMRQ 206 (490)
Q Consensus 148 ~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~---------------------~~~~~~aE~~~la~~ 206 (490)
++.++.+.++|+.-+..+...... ....+.|++.|+-.. .....+.|....+.+
T Consensus 154 ~~~~~~i~~~~~~a~~~~~~~~di-----~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~ 228 (307)
T COG1893 154 DELVKALAELFKEAGLEVELHPDI-----LAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARA 228 (307)
T ss_pred hHHHHHHHHHHHhCCCCeEEcHHH-----HHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHh
Confidence 678888888887777655432221 123445555444333 344455666666666
Q ss_pred HHHHhCCCCCHH---HHHHHHhcc-cchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCc
Q psy9637 207 AAEIHGWKLNYG---GIALMWRGG-CIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPT 282 (490)
Q Consensus 207 a~~~~~~Gld~~---~v~~i~~~g-~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~ 282 (490)
. +..++.+ .+..+.+.. .--+|.|++++... .+. +++.. ...+++.|+++|+++
T Consensus 229 ~----g~~~~~~~~~~v~~~~~~~~~~~~sSM~qDl~~g------------r~t---Eid~i---~G~vv~~a~~~gi~~ 286 (307)
T COG1893 229 E----GVELPEEVVERVLAVIRATDAENYSSMLQDLEKG------------RPT---EIDAI---NGAVVRLAKKHGLAT 286 (307)
T ss_pred c----cCCCCHHHHHHHHHHHHhcccccCchHHHHHHcC------------Ccc---cHHHH---hhHHHHHHHHhCCCC
Confidence 6 2336663 333333332 22233333332211 000 11111 356899999999999
Q ss_pred hHHHHHHHHHHHHHhC
Q psy9637 283 PAFATALAFYDGYRSK 298 (490)
Q Consensus 283 P~~~aa~~~~~~~~~~ 298 (490)
|..+..+++.+.....
T Consensus 287 P~~~~L~~lvk~~e~~ 302 (307)
T COG1893 287 PVNDTLYALLKAKEAE 302 (307)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999877653
No 88
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.36 E-value=2e-11 Score=125.49 Aligned_cols=147 Identities=14% Similarity=0.186 Sum_probs=112.0
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHH-CCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMND-HGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~-~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|-..++|+|||+ |.||..+|+.|.+ .|++|++||++.+ ...++.+.+.+ +|+||+|+|.
T Consensus 1 ~~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~----------------~~~~~~~~v~~---aDlVilavPv 61 (370)
T PRK08818 1 MIAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP----------------GSLDPATLLQR---ADVLIFSAPI 61 (370)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc----------------ccCCHHHHhcC---CCEEEEeCCH
Confidence 555689999999 9999999999996 4899999998511 24567777766 9999999999
Q ss_pred CchHHHHHHhhccc---CCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCcc-ccccCC-ccCC-CCCcchH
Q psy9637 79 GSAVDDFIDKLVPL---LEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGED-GARYGP-SLMP-GGNPAAW 151 (490)
Q Consensus 79 ~~~v~~vl~~l~~~---l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~-~a~~G~-~im~-GG~~~a~ 151 (490)
. .+.+++.++.+. ++++.+|+|.+++....... +...+..|+.. |+.|++. +...|. .+++ +...+..
T Consensus 62 ~-~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~----~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~ 136 (370)
T PRK08818 62 R-HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA----MLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWS 136 (370)
T ss_pred H-HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH----HHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHH
Confidence 5 889999988875 79999999999987332222 23445678887 7777753 445566 4544 4444557
Q ss_pred HHHHHHHHhhCCceeeCCCC
Q psy9637 152 PALKPIFQKLNPSFETSAPT 171 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g~~ 171 (490)
+.++.+++.+|++++.+.+.
T Consensus 137 ~~v~~l~~~~Ga~v~~~~ae 156 (370)
T PRK08818 137 PWVQSLCSALQAECVYATPE 156 (370)
T ss_pred HHHHHHHHHcCCEEEEcCHH
Confidence 88999999999998877663
No 89
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.35 E-value=3.7e-12 Score=106.10 Aligned_cols=90 Identities=23% Similarity=0.398 Sum_probs=76.2
Q ss_pred cEEEEcccHHHHHHHHHHHHCC---CeEEE-EeCChHHHHHHHHcccCCCCeeccC-CHHHHHhhCCCCcEEEEecCCCc
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHG---FTVVA-YNRTTAKVDSFLANEAKGTNIIGAH-SLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G---~~V~v-~dr~~~~~~~l~~~g~~~~~i~~~~-s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
||||||.|+||.+|++.|.++| ++|.+ ++|++++.+++.++.. +.... +..++++. +|+||+|||+ .
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~~---advvilav~p-~ 72 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG----VQATADDNEEAAQE---ADVVILAVKP-Q 72 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT----TEEESEEHHHHHHH---TSEEEE-S-G-G
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc----cccccCChHHhhcc---CCEEEEEECH-H
Confidence 6999999999999999999999 99995 5999999999877643 12344 79999987 9999999999 5
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.+.+++.++ +.+.++++|||..+
T Consensus 73 ~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 73 QLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred HHHHHHHHH-hhccCCCEEEEeCC
Confidence 899999999 77889999999765
No 90
>PLN02712 arogenate dehydrogenase
Probab=99.35 E-value=7.6e-11 Score=130.33 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=110.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++|||||+|.||..+|+.|.++|++|++|||+... +...+.+. ..+.++.+++.. .+|+||+|||. ..+.
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv-----~~~~d~~e~~~~--~aDvViLavP~-~~~~ 122 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGV-----SFFLDPHDLCER--HPDVILLCTSI-ISTE 122 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCC-----EEeCCHHHHhhc--CCCEEEEcCCH-HHHH
Confidence 478999999999999999999999999999998554 33333332 346788886532 28999999998 5889
Q ss_pred HHHHhhc-ccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCccc--cccCC-ccCCC---CC-cc---hH
Q psy9637 84 DFIDKLV-PLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGEDG--ARYGP-SLMPG---GN-PA---AW 151 (490)
Q Consensus 84 ~vl~~l~-~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~~--a~~G~-~im~G---G~-~~---a~ 151 (490)
++++++. +.++++.+|+|++++.. ...+..+.....+..|+.. |+.|.... ...+. .++.+ ++ .. .+
T Consensus 123 ~vl~~l~~~~l~~g~iVvDv~SvK~-~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 201 (667)
T PLN02712 123 NVLKSLPLQRLKRNTLFVDVLSVKE-FAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRC 201 (667)
T ss_pred HHHHhhhhhcCCCCeEEEECCCCcH-HHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHH
Confidence 9998885 67889999999998763 3333333333456777766 77766521 12233 33332 33 22 35
Q ss_pred HHHHHHHHhhCCceeeCCC
Q psy9637 152 PALKPIFQKLNPSFETSAP 170 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g~ 170 (490)
+.++.+++.+|++++.+.+
T Consensus 202 ~~l~~l~~~lGa~v~~ms~ 220 (667)
T PLN02712 202 KSFLEVFEREGCKMVEMSC 220 (667)
T ss_pred HHHHHHHHHcCCEEEEeCH
Confidence 5667999999998887655
No 91
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.30 E-value=6.3e-11 Score=133.61 Aligned_cols=159 Identities=20% Similarity=0.312 Sum_probs=118.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG--FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.+|+|||+|.||..+++.|.++| ++|++||+++++.+.+.+.+.. .....++.++++. +|+||+|||.. .+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~---~~~~~~~~~~~~~---aDvVilavp~~-~~ 76 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVI---DRGEEDLAEAVSG---ADVIVLAVPVL-AM 76 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCC---CcccCCHHHHhcC---CCEEEECCCHH-HH
Confidence 58999999999999999999999 4899999999988877665432 1124566666665 89999999984 88
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc-ccCCCCCccc--------cccCC-c-c--CCCCCcc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV-GCGVSGGEDG--------ARYGP-S-L--MPGGNPA 149 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l-d~~vsGg~~~--------a~~G~-~-i--m~GG~~~ 149 (490)
.++++.+.+.++++.+|+|++++.........+.+....++|+ +.|++|++.. ...+. . + ...++++
T Consensus 77 ~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~ 156 (735)
T PRK14806 77 EKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPA 156 (735)
T ss_pred HHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHH
Confidence 9999999999989999999998775554444444433456665 5688876531 11222 2 2 2346778
Q ss_pred hHHHHHHHHHhhCCceeeCCC
Q psy9637 150 AWPALKPIFQKLNPSFETSAP 170 (490)
Q Consensus 150 a~~~v~~ll~~l~~~~~~~g~ 170 (490)
.++.++++|+.+|..++.+.+
T Consensus 157 ~~~~~~~l~~~~G~~~~~~~~ 177 (735)
T PRK14806 157 ALARVDRLWRAVGADVLHMDV 177 (735)
T ss_pred HHHHHHHHHHHcCCEEEEcCH
Confidence 899999999999998877654
No 92
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.30 E-value=2.6e-12 Score=117.29 Aligned_cols=97 Identities=25% Similarity=0.440 Sum_probs=81.6
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------CCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------GTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
||+|||.|.||.++|..|+++||+|++|.|+++.++.+.+.... ..++..+++++++++. +|+|+++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~---ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED---ADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT----SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc---ccEEEecc
Confidence 69999999999999999999999999999999999988875432 1356678899998887 99999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
|+ ...+++++.+.++++++.+||.++.+.
T Consensus 78 Ps-~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PS-QAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -G-GGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cH-HHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99 589999999999999999999988765
No 93
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.29 E-value=1.3e-10 Score=113.59 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=105.4
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCC---e-EEEEeC-ChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGF---T-VVAYNR-TTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~---~-V~v~dr-~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|...+||+|||+|.||.+++..|.++|+ + +++++| ++++.+.+.+... +..+.++.+++++ +|+||++
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~DiViia 73 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYN----VSTTTDWKQHVTS---VDTIVLA 73 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcC----cEEeCChHHHHhc---CCEEEEe
Confidence 4445799999999999999999999873 3 778887 5777777765421 2346788888776 8999999
Q ss_pred cCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc-cccCCCCCccccccCC-c--cCCCCCcchH
Q psy9637 76 VKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY-VGCGVSGGEDGARYGP-S--LMPGGNPAAW 151 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~-ld~~vsGg~~~a~~G~-~--im~GG~~~a~ 151 (490)
+|+. ..+++++++.+.++ +++||.++.+...+..+ +.+ ..+..+ .-+|-.. .....|. . .-..++++..
T Consensus 74 vp~~-~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~--~~~-~~~~~v~r~~Pn~a--~~v~~g~~~~~~~~~~~~~~~ 146 (245)
T PRK07634 74 MPPS-AHEELLAELSPLLS-NQLVVTVAAGIGPSYLE--ERL-PKGTPVAWIMPNTA--AEIGKSISLYTMGQSVNETHK 146 (245)
T ss_pred cCHH-HHHHHHHHHHhhcc-CCEEEEECCCCCHHHHH--HHc-CCCCeEEEECCcHH--HHHhcCCeEEeeCCCCCHHHH
Confidence 9985 78999999888775 67999988776544322 222 222111 1223111 1122343 2 2234677889
Q ss_pred HHHHHHHHhhCCceee
Q psy9637 152 PALKPIFQKLNPSFET 167 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~ 167 (490)
+.++.+|+.+|..+..
T Consensus 147 ~~v~~lf~~~G~~~~~ 162 (245)
T PRK07634 147 ETLQLILKGIGTSQLC 162 (245)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 9999999999997753
No 94
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.27 E-value=3.1e-10 Score=112.14 Aligned_cols=199 Identities=15% Similarity=0.111 Sum_probs=119.1
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCC----eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGF----TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|.. |||+|||+|.||.+|+..|.++|. +++++||++++. + +..+.++.+++.. +|+||+|+
T Consensus 1 ~~~-mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~-----~~~~~~~~~~~~~---~D~Vilav 65 (260)
T PTZ00431 1 MEN-IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------P-----FVYLQSNEELAKT---CDIIVLAV 65 (260)
T ss_pred CCC-CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------C-----eEEeCChHHHHHh---CCEEEEEe
Confidence 543 689999999999999999999872 499999986542 1 1245678887776 89999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCC---CcchHHH
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGG---NPAAWPA 153 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG---~~~a~~~ 153 (490)
|+ ..+++++.++.+.+.++.+|.+++... .+..+.......+-++++.. -+.....|.+++..+ +++..+.
T Consensus 66 kp-~~~~~vl~~i~~~l~~~~iIS~~aGi~-~~~l~~~~~~~~~vvr~mPn----~p~~~g~g~t~i~~~~~~~~~~~~~ 139 (260)
T PTZ00431 66 KP-DLAGKVLLEIKPYLGSKLLISICGGLN-LKTLEEMVGVEAKIVRVMPN----TPSLVGQGSLVFCANNNVDSTDKKK 139 (260)
T ss_pred CH-HHHHHHHHHHHhhccCCEEEEEeCCcc-HHHHHHHcCCCCeEEEECCC----chhHhcceeEEEEeCCCCCHHHHHH
Confidence 98 589999999998887655666666554 33222211001111233222 222333455333322 4467889
Q ss_pred HHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccch
Q psy9637 154 LKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYAS---KIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCII 230 (490)
Q Consensus 154 v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~---~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~ 230 (490)
++.+|+.+|..+... +. .+..+ -++.++ .+..+.|++.-+-. + .|++.++..++......+
T Consensus 140 v~~l~~~~G~~~~v~-E~---------~~d~~-ta~~gsgPA~~~~~~~al~~~~v---~--~Gl~~~~a~~l~~~~~~G 203 (260)
T PTZ00431 140 VIDIFSACGIIQEIK-EK---------DMDIA-TAISGCGPAYVFLFIESLIDAGV---K--NGLNRDVSKNLVLQTILG 203 (260)
T ss_pred HHHHHHhCCcEEEEC-hH---------Hcchh-hhhcCCHHHHHHHHHHHHHHHHH---H--cCCCHHHHHHHHHHHHHH
Confidence 999999999866531 10 01000 111111 22333333332222 1 299999998887654444
Q ss_pred hhHhHh
Q psy9637 231 RSVFLG 236 (490)
Q Consensus 231 ~s~~l~ 236 (490)
.+.++.
T Consensus 204 ~a~ll~ 209 (260)
T PTZ00431 204 SVHMVK 209 (260)
T ss_pred HHHHHH
Confidence 444443
No 95
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.26 E-value=6e-12 Score=110.18 Aligned_cols=109 Identities=22% Similarity=0.355 Sum_probs=73.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEE-EeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVA-YNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.+||+|||.|++|..|++.|.++||+|.. |+|+++..+++...-.. ..+.++.|+++. +|+||++||++ ++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~----~~~~~~~~~~~~---aDlv~iavpDd-aI 81 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGA----GAILDLEEILRD---ADLVFIAVPDD-AI 81 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT---------TTGGGCC----SEEEE-S-CC-HH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccc----cccccccccccc---CCEEEEEechH-HH
Confidence 47999999999999999999999999875 58998888877654221 134566666655 99999999996 99
Q ss_pred HHHHHhhccc--CCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 83 DDFIDKLVPL--LEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 83 ~~vl~~l~~~--l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.++.++|... ..+|++|+.+|-+...+.. +-++++|..
T Consensus 82 ~~va~~La~~~~~~~g~iVvHtSGa~~~~vL---~p~~~~Ga~ 121 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQIVVHTSGALGSDVL---APARERGAI 121 (127)
T ss_dssp HHHHHHHHCC--S-TT-EEEES-SS--GGGG---HHHHHTT-E
T ss_pred HHHHHHHHHhccCCCCcEEEECCCCChHHhh---hhHHHCCCe
Confidence 9999999887 7899999999987755443 344556653
No 96
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.25 E-value=7.6e-11 Score=110.48 Aligned_cols=159 Identities=20% Similarity=0.213 Sum_probs=107.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
||+|+|+|.|+||..+|++|+++||+|++-+|+.+ +.+...+.-. ..+ ...++.++++. +|+||+.||- ..+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~--~~i-~~~~~~dA~~~---aDVVvLAVP~-~a~ 73 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALG--PLI-TGGSNEDAAAL---ADVVVLAVPF-EAI 73 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhc--ccc-ccCChHHHHhc---CCEEEEeccH-HHH
Confidence 47899999999999999999999999999865544 4444433221 122 35677788876 8999999999 488
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCCh--------------HHHHHHH-HHHHH----ccccccccCCCCCccccccCC--c
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEY--------------QDTDRRS-KALEA----KGLLYVGCGVSGGEDGARYGP--S 141 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~--------------~~~~~~~-~~l~~----~gi~~ld~~vsGg~~~a~~G~--~ 141 (490)
.+++.++...+. |+||||.+|..+ ....+.. +.+.. +.++-+.+.+.-.-.... +. .
T Consensus 74 ~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~-~~~~v 151 (211)
T COG2085 74 PDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPG-GRRDV 151 (211)
T ss_pred HhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcC-CceeE
Confidence 899999988775 999999999621 1111111 11111 122223332222111111 33 4
Q ss_pred cCCCCCcchHHHHHHHHHhhCCceeeCCCC
Q psy9637 142 LMPGGNPAAWPALKPIFQKLNPSFETSAPT 171 (490)
Q Consensus 142 im~GG~~~a~~~v~~ll~~l~~~~~~~g~~ 171 (490)
+++|-|.++-+.+..+.+.+|-..+.+|+.
T Consensus 152 ~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L 181 (211)
T COG2085 152 LVAGDDAEAKAVVAELAEDIGFRPLDAGPL 181 (211)
T ss_pred EEecCcHHHHHHHHHHHHhcCcceeecccc
Confidence 556666679999999999998887877875
No 97
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.25 E-value=1.6e-09 Score=106.29 Aligned_cols=204 Identities=15% Similarity=0.183 Sum_probs=130.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC----CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG----FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+++|||||.|+||..|+..|.++| .+|++.||++++.+.+.+.... ..+++..+++.. +|+||++|++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~----~~~~~~~~~~~~---advv~LavKP- 72 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGV----VTTTDNQEAVEE---ADVVFLAVKP- 72 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCC----cccCcHHHHHhh---CCEEEEEeCh-
Confidence 368999999999999999999999 6899999999999866655432 126777888887 9999999998
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc-cCCCCCccccccCC-ccCCC--CCcchHHHHH
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG-CGVSGGEDGARYGP-SLMPG--GNPAAWPALK 155 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld-~~vsGg~~~a~~G~-~im~G--G~~~a~~~v~ 155 (490)
+.+.+++..+.+ ..++++||..--..+....+ +.+. +.+.+- +|-. +.....|. .+..+ .+++..+.+.
T Consensus 73 q~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~--~~l~--~~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~v~ 145 (266)
T COG0345 73 QDLEEVLSKLKP-LTKDKLVISIAAGVSIETLE--RLLG--GLRVVRVMPNT--PALVGAGVTAISANANVSEEDKAFVE 145 (266)
T ss_pred HhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHH--HHcC--CCceEEeCCCh--HHHHcCcceeeecCccCCHHHHHHHH
Confidence 699999999998 78899999877655333222 2221 222221 2321 12223444 33332 2557778899
Q ss_pred HHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhH
Q psy9637 156 PIFQKLNPSFETSAPTPKPQRDKKEFLENIRQA--LYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSV 233 (490)
Q Consensus 156 ~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~--l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~ 233 (490)
.+|+.+|..+... +. .++.+... -.-+.+..+.|++..+-.. .|++.++..++....-.+.+.
T Consensus 146 ~l~~~~G~v~~v~-E~---------~~da~TaisGSgPAyv~~~iEal~~agv~-----~Gl~~~~A~~l~~~t~~Gaak 210 (266)
T COG0345 146 ALLSAVGKVVEVE-ES---------LMDAVTALSGSGPAYVFLFIEALADAGVR-----LGLPREEARELAAQTVAGAAK 210 (266)
T ss_pred HHHHhcCCeEEec-hH---------HhhHHHHHhcCCHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHH
Confidence 9999999865432 11 11111000 0012334444555443322 299999888887544444444
Q ss_pred hHhH
Q psy9637 234 FLGN 237 (490)
Q Consensus 234 ~l~~ 237 (490)
++..
T Consensus 211 ll~e 214 (266)
T COG0345 211 LLLE 214 (266)
T ss_pred HHHh
Confidence 4443
No 98
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.24 E-value=2.2e-10 Score=115.82 Aligned_cols=188 Identities=15% Similarity=0.119 Sum_probs=120.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-HcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL-ANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|||||+|.||.++|++|.+.|++|++++++.++..... +.+. . ..++.++++. +|+|+++||+. ...
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~-----~-~~s~~eaa~~---ADVVvLaVPd~-~~~ 87 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGF-----E-VLTVAEAAKW---ADVIMILLPDE-VQA 87 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCC-----e-eCCHHHHHhc---CCEEEEcCCHH-HHH
Confidence 6899999999999999999999999999988755544433 3332 2 3488888887 99999999986 568
Q ss_pred HHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc-ccCCCCCccc-----cccCC-ccC-CCCC--cchHH
Q psy9637 84 DFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV-GCGVSGGEDG-----ARYGP-SLM-PGGN--PAAWP 152 (490)
Q Consensus 84 ~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l-d~~vsGg~~~-----a~~G~-~im-~GG~--~~a~~ 152 (490)
.++ +++.+.+++|.+|+-+...... ..+.....++..+ -+|-.-+..- ...|. ++. +..+ .++.+
T Consensus 88 ~V~~~~I~~~Lk~g~iL~~a~G~~i~----~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~ 163 (330)
T PRK05479 88 EVYEEEIEPNLKEGAALAFAHGFNIH----FGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKD 163 (330)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCChh----hceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHH
Confidence 888 7899999999988655442211 1111112233222 2243322210 12344 455 5665 67899
Q ss_pred HHHHHHHhhCCceeeC--CCCCCCCCCHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q psy9637 153 ALKPIFQKLNPSFETS--APTPKPQRDKKEF-LENI--RQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218 (490)
Q Consensus 153 ~v~~ll~~l~~~~~~~--g~~g~~~g~~a~~-~Kll--~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~ 218 (490)
.+..+++.+|.....+ ... +.+. ..+. ...+.......+..++.+...+ |.+++
T Consensus 164 ~a~~l~~aiG~~~~g~~~ttf------~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~ea------G~~pe 222 (330)
T PRK05479 164 LALAYAKGIGGTRAGVIETTF------KEETETDLFGEQAVLCGGLTELIKAGFETLVEA------GYQPE 222 (330)
T ss_pred HHHHHHHHcCCCccceeeeee------cccccccchhhHHHHhhHHHHHHHHHHHHHHHc------CCCHH
Confidence 9999999999864210 000 0011 0111 2334555666677788888888 88887
No 99
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.23 E-value=5.2e-10 Score=111.58 Aligned_cols=150 Identities=14% Similarity=0.147 Sum_probs=102.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC----CeEEEEeCCh-HHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG----FTVVAYNRTT-AKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G----~~V~v~dr~~-~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
++|+|||+|.||..|+..|.++| ++|.+|+|++ ++.+.+..... .+..+.+..+++.. +|+||+|+|+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~---~~~~~~~~~e~~~~---aDvVilavpp- 74 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP---TVELADNEAEIFTK---CDHSFICVPP- 74 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC---CeEEeCCHHHHHhh---CCEEEEecCH-
Confidence 68999999999999999999998 7899999864 44555543321 12345777787776 8999999997
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc-cccCCCCCccccccCCccC-CC--CCcchHHHHH
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY-VGCGVSGGEDGARYGPSLM-PG--GNPAAWPALK 155 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~-ld~~vsGg~~~a~~G~~im-~G--G~~~a~~~v~ 155 (490)
..+.++++++.+.+.++.+||...++...... .+.+.. ... --+|- .+.....|.+.+ .+ -+++..+.++
T Consensus 75 ~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l--~~~~~~--~~vvR~MPN--~~~~~g~g~t~~~~~~~~~~~~~~~v~ 148 (277)
T PRK06928 75 LAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDL--LEITPG--LQVSRLIPS--LTSAVGVGTSLVAHAETVNEANKSRLE 148 (277)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCCCCHHHH--HHHcCC--CCEEEEeCc--cHHHHhhhcEEEecCCCCCHHHHHHHH
Confidence 58999999999988888899998887654422 222211 111 11221 122234555333 33 2345677899
Q ss_pred HHHHhhCCceee
Q psy9637 156 PIFQKLNPSFET 167 (490)
Q Consensus 156 ~ll~~l~~~~~~ 167 (490)
.+|+.+|..+..
T Consensus 149 ~l~~~~G~~~~v 160 (277)
T PRK06928 149 ETLSHFSHVMTI 160 (277)
T ss_pred HHHHhCCCEEEE
Confidence 999999986543
No 100
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.23 E-value=2.9e-10 Score=107.84 Aligned_cols=138 Identities=22% Similarity=0.302 Sum_probs=100.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-ccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-EAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|+|+|+|+||..+|++|.+.|++|+++|+++++++.+.+. +. ... +..++... .+|+++.|...+...+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~-----~~v-~~~~l~~~--~~Dv~vp~A~~~~I~~ 100 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGA-----TVV-APEEIYSV--DADVFAPCALGGVIND 100 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCC-----EEE-cchhhccc--cCCEEEecccccccCH
Confidence 689999999999999999999999999999999988887765 32 123 33444432 3899986765554445
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc-cCC-CCCccccccCCccCCCCCc-chHHHHHHHHH
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG-CGV-SGGEDGARYGPSLMPGGNP-AAWPALKPIFQ 159 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld-~~v-sGg~~~a~~G~~im~GG~~-~a~~~v~~ll~ 159 (490)
+.++.+ +.++|++.+|+...+ .+..+.++++|+.|++ ... +| +...+...|+++.+ ++.++++++++
T Consensus 101 ~~~~~l-----~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~NaG---Gv~~~~~e~~~~~~~~~~~~~~~~~~ 170 (200)
T cd01075 101 DTIPQL-----KAKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNAG---GLINVADELYGGNEARVLAKVEAIYD 170 (200)
T ss_pred HHHHHc-----CCCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeCc---CceeehhHHhCCcHHHHHHHHHHHHH
Confidence 555544 368999999987644 6677889999999987 555 55 34445677888764 55666666544
No 101
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.17 E-value=7.9e-11 Score=109.93 Aligned_cols=150 Identities=16% Similarity=0.235 Sum_probs=96.1
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-----------ccC--------CCCeeccCCHHHHHhhC
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-----------EAK--------GTNIIGAHSLEELVKNL 66 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------g~~--------~~~i~~~~s~~e~v~~l 66 (490)
||+|||.|.||..+|..++.+|++|++||++++..+...+. +.. -.++...+++++++ +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~- 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D- 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h-
Confidence 69999999999999999999999999999999976653321 110 13566788888887 4
Q ss_pred CCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH--H--ccccccccCCCCCccccccCCc
Q psy9637 67 KKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE--A--KGLLYVGCGVSGGEDGARYGPS 141 (490)
Q Consensus 67 ~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~--~--~gi~~ld~~vsGg~~~a~~G~~ 141 (490)
+|+||-++|....++ +++.+|...++++.++...+++.+... +.+.+. + -|+||+..|-.-..- =
T Consensus 79 --adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~--la~~~~~p~R~ig~Hf~~P~~~~~lV------E 148 (180)
T PF02737_consen 79 --ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISE--LAAALSRPERFIGMHFFNPPHLMPLV------E 148 (180)
T ss_dssp --ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH--HHTTSSTGGGEEEEEE-SSTTT--EE------E
T ss_pred --hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHH--HHhccCcCceEEEEecccccccCceE------E
Confidence 899999999987776 456888888888888877766654332 222221 1 166766533110000 1
Q ss_pred cCCC--CCcchHHHHHHHHHhhCCceee
Q psy9637 142 LMPG--GNPAAWPALKPIFQKLNPSFET 167 (490)
Q Consensus 142 im~G--G~~~a~~~v~~ll~~l~~~~~~ 167 (490)
++.| -+++.++++..+++.++...+.
T Consensus 149 vv~~~~T~~~~~~~~~~~~~~~gk~pv~ 176 (180)
T PF02737_consen 149 VVPGPKTSPETVDRVRALLRSLGKTPVV 176 (180)
T ss_dssp EEE-TTS-HHHHHHHHHHHHHTT-EEEE
T ss_pred EeCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 2222 3678999999999999876554
No 102
>KOG2666|consensus
Probab=99.13 E-value=3.4e-09 Score=103.57 Aligned_cols=254 Identities=17% Similarity=0.216 Sum_probs=176.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHccc--------------CCCCeeccCCHHHHHhhCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG--FTVVAYNRTTAKVDSFLANEA--------------KGTNIIGAHSLEELVKNLK 67 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~--------------~~~~i~~~~s~~e~v~~l~ 67 (490)
|+||..||+|.+|.+-..-++-+- .+|++.|.+.+++.+...... ++.++...++.+..+..
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~e-- 78 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKE-- 78 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhh--
Confidence 368999999999998777666443 578899999888775543211 14566677888888887
Q ss_pred CCcEEEEecCCCc--------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH--Hccccc--cccCC
Q psy9637 68 KPRRVMMLVKAGS--------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE--AKGLLY--VGCGV 129 (490)
Q Consensus 68 ~~dvIil~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~--~~gi~~--ld~~v 129 (490)
+|+||++|.++. -++++...+.......+||+.-||+..+..+.+...+. .+|++| +.-|-
T Consensus 79 -adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpe 157 (481)
T KOG2666|consen 79 -ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPE 157 (481)
T ss_pred -cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChH
Confidence 999999996543 23455556666667789999999988777777666664 346655 33343
Q ss_pred CCCcccc---ccCC-ccCCCCCc--ch---HHHHHHHHHhhCCc--eeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9637 130 SGGEDGA---RYGP-SLMPGGNP--AA---WPALKPIFQKLNPS--FETSAPTPKPQRDKKEFLENIRQALYASKIVSYA 198 (490)
Q Consensus 130 sGg~~~a---~~G~-~im~GG~~--~a---~~~v~~ll~~l~~~--~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~a 198 (490)
+-.+-.| ...+ .+++||++ +. ++.+..+++..-.. ++....- .+++-|++.|++++-.+.+.+
T Consensus 158 flaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntw------sselsklaanaflaqrissin 231 (481)
T KOG2666|consen 158 FLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTW------SSELSKLAANAFLAQRISSIN 231 (481)
T ss_pred HhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeecccc------HHHHHHHHHHHHHHHHHhhhH
Confidence 2211111 1223 56788865 43 44444555544331 2221111 468899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHc
Q psy9637 199 QGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALL 278 (490)
Q Consensus 199 E~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~ 278 (490)
-..+++++- |.|..++.......+.|.+.||.. +-+|+ -.+.+||+-.++-.++.+
T Consensus 232 s~salceat------gadv~eva~avg~d~rig~kfl~a----------------svgfg--gscfqkdilnlvyice~l 287 (481)
T KOG2666|consen 232 SMSALCEAT------GADVSEVAYAVGTDSRIGSKFLNA----------------SVGFG--GSCFQKDILNLVYICECL 287 (481)
T ss_pred HHHHHHHhc------CCCHHHHHHHhcccccccHHHhhc----------------ccCcC--chhHHHHHHHHHHHHhcC
Confidence 999999999 999999999998888888888765 22343 346899999999999999
Q ss_pred CCCchHHHHHHHHHHHH
Q psy9637 279 GIPTPAFATALAFYDGY 295 (490)
Q Consensus 279 gv~~P~~~aa~~~~~~~ 295 (490)
|+|- +.+|+++.
T Consensus 288 nlpe-----va~ywqqv 299 (481)
T KOG2666|consen 288 NLPE-----VAEYWQQV 299 (481)
T ss_pred CChH-----HHHHHHHH
Confidence 8773 34555543
No 103
>PRK07574 formate dehydrogenase; Provisional
Probab=99.11 E-value=1e-09 Score=113.64 Aligned_cols=111 Identities=14% Similarity=0.215 Sum_probs=93.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|.+|.+|||++...+.....+ +....+++++++. +|+|++++|..+.++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g-----~~~~~~l~ell~~---aDvV~l~lPlt~~T~~ 264 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELG-----LTYHVSFDSLVSV---CDVVTIHCPLHPETEH 264 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcC-----ceecCCHHHHhhc---CCEEEEcCCCCHHHHH
Confidence 5899999999999999999999999999999864333222222 2345789999887 9999999999999999
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ ++.+..+++|.++|+++.+..-+...+.+.++...+.
T Consensus 265 li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 265 LFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred HhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 98 5688889999999999999988999988988877554
No 104
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.11 E-value=6.3e-10 Score=113.51 Aligned_cols=109 Identities=20% Similarity=0.264 Sum_probs=91.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+||++++....+. ....+++++++. +|+|++++|....+..
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~---------~~~~~l~ell~~---aDiVil~lP~t~~t~~ 214 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFL---------TYKDSVKEAIKD---ADIISLHVPANKESYH 214 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhh---------hccCCHHHHHhc---CCEEEEeCCCcHHHHH
Confidence 5899999999999999999999999999999976543221 135688888887 9999999999877777
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
++ .++++.+++|.++|+++.+.--+...+.+.+....+...
T Consensus 215 li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~ga 256 (330)
T PRK12480 215 LFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGA 256 (330)
T ss_pred HHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEE
Confidence 77 677888999999999999888888888888887655443
No 105
>PLN03139 formate dehydrogenase; Provisional
Probab=99.09 E-value=1.6e-09 Score=112.11 Aligned_cols=111 Identities=13% Similarity=0.189 Sum_probs=93.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|+||..+|++|..-|.+|.+||+++...+...+.+. ...+++++++.. +|+|++++|..+.++.
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~-----~~~~~l~ell~~---sDvV~l~lPlt~~T~~ 271 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA-----KFEEDLDAMLPK---CDVVVINTPLTEKTRG 271 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc-----eecCCHHHHHhh---CCEEEEeCCCCHHHHH
Confidence 58999999999999999999999999999998543333333222 245689999987 9999999999999999
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ .+++..+++|.++|+++.+..-+...+.+.++...+.
T Consensus 272 li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 272 MFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred HhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence 98 5688889999999999999888888888888877554
No 106
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.06 E-value=4.8e-09 Score=104.90 Aligned_cols=193 Identities=16% Similarity=0.145 Sum_probs=120.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-----------HcccC--------CCCeeccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL-----------ANEAK--------GTNIIGAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~~--------~~~i~~~~s~~e~v~ 64 (490)
.++|+|||.|.||..+|..++..||+|+++|++++.+++.. +.|.. -.++...+++.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~---- 78 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA---- 78 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh----
Confidence 46899999999999999999998899999999977655432 22211 12344445555
Q ss_pred hCCCCcEEEEecCCCchHHH-HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH--H--ccccccccCCCCCccccccC
Q psy9637 65 NLKKPRRVMMLVKAGSAVDD-FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE--A--KGLLYVGCGVSGGEDGARYG 139 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~--~--~gi~~ld~~vsGg~~~a~~G 139 (490)
.++.+|+||-+|+....++. ++.++-+.++++.|+-..+++.+.+. +.+.+. + -|+||...|..-.--
T Consensus 79 ~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~--ia~~~~rper~iG~HFfNP~~~m~LV----- 151 (307)
T COG1250 79 ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITE--LAEALKRPERFIGLHFFNPVPLMPLV----- 151 (307)
T ss_pred HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHH--HHHHhCCchhEEEEeccCCCCcceeE-----
Confidence 23449999999999988874 55677777766666654444444332 333332 1 277777654211111
Q ss_pred CccCCC--CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy9637 140 PSLMPG--GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217 (490)
Q Consensus 140 ~~im~G--G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~ 217 (490)
-++.| -++++++++..+.+.++.......+.. | ..++ ........|++.+...= ..++
T Consensus 152 -EvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~p---G---Fi~N-------Ril~~~~~eA~~l~~eG------va~~ 211 (307)
T COG1250 152 -EVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVP---G---FIVN-------RLLAALLNEAIRLLEEG------VATP 211 (307)
T ss_pred -EEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCC---c---eehH-------hHHHHHHHHHHHHHHhC------CCCH
Confidence 11222 146899999999999997654433321 0 1111 12234455666666552 4888
Q ss_pred HHHHHHHhcc
Q psy9637 218 GGIALMWRGG 227 (490)
Q Consensus 218 ~~v~~i~~~g 227 (490)
+++=.+|+.+
T Consensus 212 e~ID~~~~~~ 221 (307)
T COG1250 212 EEIDAAMRQG 221 (307)
T ss_pred HHHHHHHHhc
Confidence 8888888654
No 107
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.05 E-value=1e-09 Score=112.13 Aligned_cols=109 Identities=23% Similarity=0.316 Sum_probs=91.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+|||++.... ....+. ...+++++++. +|+|++++|....++.
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~------~~~~l~ell~~---aDiV~l~lP~t~~T~~ 220 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGA------EYRPLEELLRE---SDFVSLHVPLTKETYH 220 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCC------EecCHHHHHhh---CCEEEEeCCCChHHhh
Confidence 5899999999999999999999999999999865432 222222 24588998887 9999999999988988
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ .+.+..+++|.++|+++.+...+...+.+.+.+..+.
T Consensus 221 ~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 260 (333)
T PRK13243 221 MINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIA 260 (333)
T ss_pred ccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE
Confidence 88 5788889999999999999988988888888876554
No 108
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.03 E-value=1e-08 Score=102.47 Aligned_cols=248 Identities=19% Similarity=0.148 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC----CCCe-----eccCCHHHHHhhCCCCcEEEEecCCCchHHHH
Q psy9637 15 MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK----GTNI-----IGAHSLEELVKNLKKPRRVMMLVKAGSAVDDF 85 (490)
Q Consensus 15 MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~----~~~i-----~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~v 85 (490)
||..+|..|+++||+|++++|+ +..+.+.+.|.. ..+. ...+++++ ++.+|+||++|++. +++++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~----~~~~D~iiv~vKs~-~~~~~ 75 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE----LPPADLVIITVKAY-QTEEA 75 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh----cCCCCEEEEeccch-hHHHH
Confidence 7899999999999999999997 667777765532 1111 12233333 23489999999995 89999
Q ss_pred HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc----cccccccCCCCCccccccCC-ccCCCCCc---chHHHHHHH
Q psy9637 86 IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK----GLLYVGCGVSGGEDGARYGP-SLMPGGNP---AAWPALKPI 157 (490)
Q Consensus 86 l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~----gi~~ld~~vsGg~~~a~~G~-~im~GG~~---~a~~~v~~l 157 (490)
++.+.+.+.++.+||-..|+... .....+.+... |+.+..+-..+...-...+. .+.+|..+ +..+.+..+
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 99999999999999999987632 22222333221 22233332222111111222 34444322 334566666
Q ss_pred HHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9637 158 FQKLNPSFETSAPTPKPQRDKKEFLENIRQALY---------------------ASKIVSYAQGFMLMRQAAEIHGWKLN 216 (490)
Q Consensus 158 l~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~---------------------~~~~~~~aE~~~la~~a~~~~~~Gld 216 (490)
|+..+.++...... ....+.|++.|+.. ......+.|+..++++. |..++
T Consensus 155 l~~~~~~~~~~~di-----~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~----G~~~~ 225 (293)
T TIGR00745 155 LNEAGIPAELHGDI-----LAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAE----GVDLP 225 (293)
T ss_pred HHhCCCCCEecchH-----HHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhC----CCCCC
Confidence 76655443322221 13445555555422 23344567777777766 33444
Q ss_pred HHHHHHHHhc----ccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q psy9637 217 YGGIALMWRG----GCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFY 292 (490)
Q Consensus 217 ~~~v~~i~~~----g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~ 292 (490)
.+.+.+.+.. ....+|.+++++.. +-..+++.. .+.+++.|+++|+|+|..+..++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~sSm~~D~~~---------------gr~tEid~i---~G~~v~~a~~~gv~~P~~~~l~~~~ 287 (293)
T TIGR00745 226 DDEVEELVRAVIRMTAENTSSMLQDLLR---------------GRRTEIDAI---NGAVVRLAEKLGIDAPVNRTLYALL 287 (293)
T ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHc---------------CCcchHHHh---ccHHHHHHHHcCCCCChHHHHHHHH
Confidence 4444443321 11111222222110 001122211 4568999999999999999999887
Q ss_pred HHHH
Q psy9637 293 DGYR 296 (490)
Q Consensus 293 ~~~~ 296 (490)
+...
T Consensus 288 ~~~e 291 (293)
T TIGR00745 288 KALE 291 (293)
T ss_pred HHhh
Confidence 6553
No 109
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.02 E-value=9.3e-10 Score=99.62 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=84.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch-
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA- 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~- 81 (490)
.++|+|||+|.||..++..|.+.| ++|+++||++++.+.+.+............++.++++. +|+|++|+|.+..
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~Dvvi~~~~~~~~~ 95 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAE---ADLIINTTPVGMKP 95 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhcccc---CCEEEeCcCCCCCC
Confidence 368999999999999999999996 89999999999888876543210000124556665544 9999999999754
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
++.+... ...++++.+++|+++.. ..+ ...+.+++.|++|++.
T Consensus 96 ~~~~~~~-~~~~~~~~~v~D~~~~~-~~~-~l~~~~~~~g~~~v~g 138 (155)
T cd01065 96 GDELPLP-PSLLKPGGVVYDVVYNP-LET-PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCCCCC-HHHcCCCCEEEEcCcCC-CCC-HHHHHHHHCCCceeCC
Confidence 3332211 12357899999998874 444 6777888888877664
No 110
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.02 E-value=2.2e-08 Score=98.79 Aligned_cols=143 Identities=20% Similarity=0.369 Sum_probs=95.7
Q ss_pred HHHHHHHCC--CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCC
Q psy9637 19 LILNMNDHG--FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKG 96 (490)
Q Consensus 19 lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g 96 (490)
+|+.|.++| ++|++||++++..+...+.|... ....+ .+.+.. +|+||+|||.. .+.++++++.++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~---~~~~~-~~~~~~---~DlvvlavP~~-~~~~~l~~~~~~~~~~ 72 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIID---EASTD-IEAVED---ADLVVLAVPVS-AIEDVLEEIAPYLKPG 72 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSS---EEESH-HHHGGC---CSEEEE-S-HH-HHHHHHHHHHCGS-TT
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCee---eccCC-HhHhcC---CCEEEEcCCHH-HHHHHHHHhhhhcCCC
Confidence 588899999 79999999999988877766531 11222 455555 89999999995 8999999999999999
Q ss_pred CEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCc----c----ccccCC-ccCC-CC--CcchHHHHHHHHHhhCC
Q psy9637 97 DIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGE----D----GARYGP-SLMP-GG--NPAAWPALKPIFQKLNP 163 (490)
Q Consensus 97 ~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~----~----~a~~G~-~im~-GG--~~~a~~~v~~ll~~l~~ 163 (490)
.+|+|.+++.-.... ..+.....+..|+.. |+.|.+ . ....|. .+++ +. +++.++.++.+++.+|+
T Consensus 73 ~iv~Dv~SvK~~~~~-~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga 151 (258)
T PF02153_consen 73 AIVTDVGSVKAPIVE-AMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGA 151 (258)
T ss_dssp SEEEE--S-CHHHHH-HHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-
T ss_pred cEEEEeCCCCHHHHH-HHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCC
Confidence 999999998754444 333344467788877 666652 2 223455 3333 33 34789999999999999
Q ss_pred ceeeCCC
Q psy9637 164 SFETSAP 170 (490)
Q Consensus 164 ~~~~~g~ 170 (490)
+++.+.+
T Consensus 152 ~~~~~~~ 158 (258)
T PF02153_consen 152 RVVEMDA 158 (258)
T ss_dssp EEEE--H
T ss_pred EEEEcCH
Confidence 8887654
No 111
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.02 E-value=7.5e-09 Score=115.92 Aligned_cols=191 Identities=12% Similarity=0.108 Sum_probs=126.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-----------HcccC--------CCCeeccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL-----------ANEAK--------GTNIIGAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~~--------~~~i~~~~s~~e~v~ 64 (490)
..+|+|||.|.||..||..++.+||+|++||++++.++... +.+.. -.+++++++++++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF-E 391 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 35799999999999999999999999999999998765422 11111 1356667777543 4
Q ss_pred hCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCccccccC
Q psy9637 65 NLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARYG 139 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~G 139 (490)
. +|+||-++|.+..++ +++.++.+.++++.|+...+++.+.+. +.+.+.. -|.||...|-. . .-
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~--la~~~~~p~r~~g~Hff~P~~~-----~-~l 460 (715)
T PRK11730 392 R---VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISL--LAKALKRPENFCGMHFFNPVHR-----M-PL 460 (715)
T ss_pred C---CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH--HHhhcCCCccEEEEecCCcccc-----c-ce
Confidence 3 999999999988877 555888888888877766555554333 3333322 26666644311 0 00
Q ss_pred CccCCC--CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy9637 140 PSLMPG--GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217 (490)
Q Consensus 140 ~~im~G--G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~ 217 (490)
-=++.| -++++++.+..+++.++...+.+.+.. | . +.|=+ ....+.|++.+.+. |.++
T Consensus 461 VEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~p---G---f----v~nRi---~~~~~~ea~~lv~~-------Ga~~ 520 (715)
T PRK11730 461 VEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCP---G---F----FVNRV---LFPYFAGFSQLLRD-------GADF 520 (715)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcC---c---h----hHHHH---HHHHHHHHHHHHHc-------CCCH
Confidence 023333 257899999999999999877765532 1 1 22222 22345677777654 7788
Q ss_pred HHHHHHHhc
Q psy9637 218 GGIALMWRG 226 (490)
Q Consensus 218 ~~v~~i~~~ 226 (490)
+++=.+++.
T Consensus 521 e~ID~a~~~ 529 (715)
T PRK11730 521 RQIDKVMEK 529 (715)
T ss_pred HHHHHHHHh
Confidence 877777654
No 112
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.01 E-value=1e-08 Score=103.80 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=95.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCC-hHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRT-TAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|||||+|+||.++|++|.++|++|+++++. +++.+.+.+.|. . ..++.++++. +|+|+++||+..+..
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv-----~-~~s~~ea~~~---ADiVvLaVpp~~~~~ 74 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGF-----K-VGTVEEAIPQ---ADLIMNLLPDEVQHE 74 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCC-----E-ECCHHHHHhc---CCEEEEeCCcHhHHH
Confidence 68999999999999999999999998876544 455555554443 2 3467787776 999999999864677
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc-ccccCCCCCcc---cc--ccCC-ccC-CCC--CcchHHH
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL-YVGCGVSGGED---GA--RYGP-SLM-PGG--NPAAWPA 153 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~-~ld~~vsGg~~---~a--~~G~-~im-~GG--~~~a~~~ 153 (490)
.+++++.+.++++. +|....+..... .+.....++. +.-+|-.-+.. .. ..|. +++ ++- +.++.+.
T Consensus 75 ~v~~ei~~~l~~g~-iVs~aaG~~i~~---~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~ 150 (314)
T TIGR00465 75 VYEAEIQPLLKEGK-TLGFSHGFNIHF---VQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAI 150 (314)
T ss_pred HHHHHHHhhCCCCc-EEEEeCCccHhh---ccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHH
Confidence 77788988888776 444444332221 1111122322 22345433321 00 2444 443 332 4467889
Q ss_pred HHHHHHhhCCc
Q psy9637 154 LKPIFQKLNPS 164 (490)
Q Consensus 154 v~~ll~~l~~~ 164 (490)
+..+|+.+|..
T Consensus 151 ~~~~~~~iG~~ 161 (314)
T TIGR00465 151 ALAYAKAIGGG 161 (314)
T ss_pred HHHHHHHcCCC
Confidence 99999999985
No 113
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.00 E-value=2.3e-08 Score=111.88 Aligned_cols=191 Identities=13% Similarity=0.111 Sum_probs=127.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-----------cccC--------CCCeeccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA-----------NEAK--------GTNIIGAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~--------~~~i~~~~s~~e~v~ 64 (490)
.++|+|||.|.||..||..++.+|++|+++|++++.+++..+ .+.. -.+|+++.+++++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF-D 391 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 357999999999999999999999999999999988765322 1110 1346666776543 4
Q ss_pred hCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCccccccC
Q psy9637 65 NLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARYG 139 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~G 139 (490)
+ +|+||-+||.+..++ +++.++.+.++++.|+...+++.+.+. +.+.+.. -|.||...+-.-.-
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~--ia~~~~~p~r~ig~Hff~P~~~~~l------ 460 (714)
T TIGR02437 392 N---VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISL--LAKALKRPENFCGMHFFNPVHRMPL------ 460 (714)
T ss_pred C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH--HHhhcCCcccEEEEecCCCcccCce------
Confidence 3 899999999988877 556888888888887766555554433 3333322 26677643311000
Q ss_pred CccCCC--CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy9637 140 PSLMPG--GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217 (490)
Q Consensus 140 ~~im~G--G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~ 217 (490)
-=++.| -++++++.+..+++.++...+.+.+.. | .+.|=+ ....+.|++.+.+. |.++
T Consensus 461 vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p---G-------fi~NRl---~~~~~~ea~~l~~e-------G~~~ 520 (714)
T TIGR02437 461 VEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCP---G-------FFVNRV---LFPYFGGFSKLLRD-------GADF 520 (714)
T ss_pred EeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcc---c-------chHHHH---HHHHHHHHHHHHHC-------CCCH
Confidence 012333 256899999999999999877766532 1 122222 23345777777654 7888
Q ss_pred HHHHHHHhc
Q psy9637 218 GGIALMWRG 226 (490)
Q Consensus 218 ~~v~~i~~~ 226 (490)
+++=++++.
T Consensus 521 ~~ID~a~~~ 529 (714)
T TIGR02437 521 VRIDKVMEK 529 (714)
T ss_pred HHHHHHHHh
Confidence 888777654
No 114
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.98 E-value=2.4e-09 Score=107.12 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=71.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||.++|+||.+.|++|++||+.....+.....+.. ..+++++++. +|+|++++|+. ..+.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~------v~sl~Eaak~---ADVV~llLPd~-~t~~ 86 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE------VMSVSEAVRT---AQVVQMLLPDE-QQAH 86 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE------ECCHHHHHhc---CCEEEEeCCCh-HHHH
Confidence 589999999999999999999999999999875444444443432 3589999987 99999999985 5678
Q ss_pred HH-HhhcccCCCCCEEEcC
Q psy9637 85 FI-DKLVPLLEKGDIIIDG 102 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~ 102 (490)
++ +++++.+++|.+++-.
T Consensus 87 V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 87 VYKAEVEENLREGQMLLFS 105 (335)
T ss_pred HHHHHHHhcCCCCCEEEEC
Confidence 87 5799999999977643
No 115
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.98 E-value=2.4e-09 Score=107.89 Aligned_cols=106 Identities=19% Similarity=0.312 Sum_probs=88.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+|||+... .+.. ....+++++++. +|+|++++|..++++.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~----~~~~~l~ell~~---aDiv~~~lp~t~~T~~ 189 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGIS----SIYMEPEDIMKK---SDFVLISLPLTDETRG 189 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcc----cccCCHHHHHhh---CCEEEECCCCCchhhc
Confidence 58999999999999999998889999999998431 1111 124689998877 9999999999999998
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ .+.+..+++|.++|++|.+...+...+.+.+.+..+.
T Consensus 190 li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~ 229 (303)
T PRK06436 190 MINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDK 229 (303)
T ss_pred CcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCce
Confidence 88 5677889999999999999999999999888876454
No 116
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.98 E-value=2e-09 Score=100.23 Aligned_cols=110 Identities=19% Similarity=0.344 Sum_probs=89.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|..+|+.|..-|.+|++|||+..........+. ...+++++++. +|+|++++|....++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~------~~~~l~ell~~---aDiv~~~~plt~~T~~ 107 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV------EYVSLDELLAQ---ADIVSLHLPLTPETRG 107 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE------EESSHHHHHHH----SEEEE-SSSSTTTTT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc------eeeehhhhcch---hhhhhhhhccccccce
Confidence 68999999999999999999999999999999887664444332 36799999998 9999999998888877
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.+ .+.+..+++|.++|+.+.+.--+...+.+.+++.-+.
T Consensus 108 li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 108 LINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp SBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred eeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 77 5677889999999999998877777788888776544
No 117
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.96 E-value=2.3e-09 Score=108.54 Aligned_cols=110 Identities=17% Similarity=0.296 Sum_probs=89.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+||++++....+.. .....+++++++. +|+|++++|..++++.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~-------~~~~~~l~e~l~~---aDvvv~~lPlt~~T~~ 206 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS-------FAGREELSAFLSQ---TRVLINLLPNTPETVG 206 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee-------ecccccHHHHHhc---CCEEEECCCCCHHHHH
Confidence 58999999999999999999999999999997654221110 1124577888877 9999999999999999
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
++ .+.+..+++|.++|+.+-+.--+...+.+.+.+..+..
T Consensus 207 li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~g 247 (312)
T PRK15469 207 IINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKG 247 (312)
T ss_pred HhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeee
Confidence 88 46778899999999999988888888888888776543
No 118
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.95 E-value=2.1e-08 Score=112.33 Aligned_cols=190 Identities=12% Similarity=0.058 Sum_probs=124.7
Q ss_pred CCcEEEEcccHHHHHHHHHHH-HCCCeEEEEeCChHHHHHHHH-----------cccC--------CCCeeccCCHHHHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMN-DHGFTVVAYNRTTAKVDSFLA-----------NEAK--------GTNIIGAHSLEELV 63 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~-----------~g~~--------~~~i~~~~s~~e~v 63 (490)
.++|+|||.|.||..+|..++ .+|++|++||++++.++...+ .+.. ..+|+.++++++ +
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 387 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG-F 387 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-h
Confidence 368999999999999999999 889999999999886654321 1110 135666777643 3
Q ss_pred hhCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCcccccc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARY 138 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~ 138 (490)
++ +|+||-++|....++ +++.++.+.++++.|+...+++.+.+. +.+.+.. -|.||..-|- .. .
T Consensus 388 ~~---aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~--la~~~~~p~r~ig~Hff~P~~-----~~-~ 456 (708)
T PRK11154 388 KH---ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQ--IAAAAARPEQVIGLHYFSPVE-----KM-P 456 (708)
T ss_pred cc---CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH--HHHhcCcccceEEEecCCccc-----cC-c
Confidence 44 999999999987776 555888888888888876655554433 3333322 2666654331 10 0
Q ss_pred CCccCCC--CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9637 139 GPSLMPG--GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLN 216 (490)
Q Consensus 139 G~~im~G--G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld 216 (490)
---++.| -++++++.+..+++.++...+.+.+.. | ... --.....+.|++.+.+. |++
T Consensus 457 lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~p---G---fi~-------nRl~~~~~~EA~~lv~e-------Gv~ 516 (708)
T PRK11154 457 LVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGA---G---FYV-------NRILAPYINEAARLLLE-------GEP 516 (708)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccC---c---HHH-------HHHHHHHHHHHHHHHHc-------CCC
Confidence 0023333 367899999999999999776654431 1 111 12234556777777664 777
Q ss_pred HHHHHHHHh
Q psy9637 217 YGGIALMWR 225 (490)
Q Consensus 217 ~~~v~~i~~ 225 (490)
++++=.++.
T Consensus 517 ~~dID~a~~ 525 (708)
T PRK11154 517 IEHIDAALV 525 (708)
T ss_pred HHHHHHHHH
Confidence 777766654
No 119
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.94 E-value=4.9e-09 Score=107.21 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=88.5
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMN-DHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|||||+|.||..+|++|+ ..|.+|.+||+++.... . .. +....+++++++. +|+|++++|....++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~-~~-----~~~~~~l~ell~~---aDvIvl~lP~t~~t~ 215 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--A-TY-----VDYKDTIEEAVEG---ADIVTLHMPATKYNH 215 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--H-hh-----ccccCCHHHHHHh---CCEEEEeCCCCcchh
Confidence 68999999999999999994 46889999999875421 1 11 1245689999887 999999999987777
Q ss_pred HHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 84 DFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 84 ~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.++ .++++.+++|.++|+++.+...++..+.+.+....+.
T Consensus 216 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 256 (332)
T PRK08605 216 YLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256 (332)
T ss_pred hhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence 665 4577889999999999999999999999988876554
No 120
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.94 E-value=3.4e-08 Score=110.43 Aligned_cols=190 Identities=13% Similarity=0.066 Sum_probs=124.3
Q ss_pred CCcEEEEcccHHHHHHHHHHH-HCCCeEEEEeCChHHHHHHHH-----------cccC--------CCCeeccCCHHHHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMN-DHGFTVVAYNRTTAKVDSFLA-----------NEAK--------GTNIIGAHSLEELV 63 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~-----------~g~~--------~~~i~~~~s~~e~v 63 (490)
.++|+|||.|.||..+|..++ .+|++|++||++++.++...+ .+.. ..+|+.++++++ +
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 382 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG-F 382 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH-h
Confidence 358999999999999999998 589999999999987654321 1110 135666777754 3
Q ss_pred hhCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCcccccc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARY 138 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~ 138 (490)
+. +|+||-++|.+..++ +++.++.+.++++.|+...+++.+.+. +.+.+.. -|.||...|-.-...
T Consensus 383 ~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~--la~~~~~p~r~~g~HffnP~~~~~lV---- 453 (699)
T TIGR02440 383 KD---VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQ--IAAAASRPENVIGLHYFSPVEKMPLV---- 453 (699)
T ss_pred cc---CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH--HHHhcCCcccEEEEecCCccccCceE----
Confidence 43 999999999987777 556888888888877765555544333 3333322 266776543211100
Q ss_pred CCccCCC--CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9637 139 GPSLMPG--GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLN 216 (490)
Q Consensus 139 G~~im~G--G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld 216 (490)
=++.| -++++++.+..+++.++...+.+.+.. | ..++ -.....+.|++.+.+. |++
T Consensus 454 --Evv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~p---G---fi~n-------Rl~~~~~~Ea~~l~~~-------G~~ 511 (699)
T TIGR02440 454 --EVIPHAGTSEQTIATTVALAKKQGKTPIVVADKA---G---FYVN-------RILAPYMNEAARLLLE-------GEP 511 (699)
T ss_pred --EEeCCCCCCHHHHHHHHHHHHHcCCeEEEEcccc---c---hHHH-------HHHHHHHHHHHHHHHC-------CCC
Confidence 12332 357899999999999999887765432 1 1111 2234566777777653 677
Q ss_pred HHHHHHHHh
Q psy9637 217 YGGIALMWR 225 (490)
Q Consensus 217 ~~~v~~i~~ 225 (490)
++++=.+++
T Consensus 512 ~~dID~a~~ 520 (699)
T TIGR02440 512 VEHIDKALV 520 (699)
T ss_pred HHHHHHHHH
Confidence 777766653
No 121
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.94 E-value=1.4e-08 Score=113.77 Aligned_cols=189 Identities=12% Similarity=0.063 Sum_probs=125.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-----------cccC--------CCCeeccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA-----------NEAK--------GTNIIGAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~--------~~~i~~~~s~~e~v~ 64 (490)
..+|+|||.|.||..||..++.+|++|++||++++.+++..+ .+.. -.+++++++++++ +
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 413 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF-K 413 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-c
Confidence 357999999999999999999999999999999988665322 1110 1356667777543 3
Q ss_pred hCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCccccccC
Q psy9637 65 NLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARYG 139 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~G 139 (490)
+ +|+||-+||.+..++ +++.++.+.++++.|+...+++.+.+ ++.+.+.. -|.||..-+-.-..
T Consensus 414 ~---aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~ig~Hff~P~~~m~L------ 482 (737)
T TIGR02441 414 N---ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK--DIAAVSSRPEKVIGMHYFSPVDKMQL------ 482 (737)
T ss_pred c---CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCccceEEEeccCCcccCce------
Confidence 3 899999999988887 55588888888888876555554433 33333322 26676643311000
Q ss_pred CccCCC--CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy9637 140 PSLMPG--GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217 (490)
Q Consensus 140 ~~im~G--G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~ 217 (490)
--++.| -++++++.+..+++.++...+.+++.. | . +.|=+ ....+.|++.+.+. |+++
T Consensus 483 vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p---G---F----i~NRi---~~~~~~ea~~lv~e-------Gv~~ 542 (737)
T TIGR02441 483 LEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGP---G---F----YTTRC---LGPMLAEVIRLLQE-------GVDP 542 (737)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcC---C---c----hHHHH---HHHHHHHHHHHHHc-------CCCH
Confidence 012222 367899999999999999877766532 1 1 11212 23556777777654 7787
Q ss_pred HHHHHHH
Q psy9637 218 GGIALMW 224 (490)
Q Consensus 218 ~~v~~i~ 224 (490)
+++=.++
T Consensus 543 ~~ID~a~ 549 (737)
T TIGR02441 543 KKLDKLT 549 (737)
T ss_pred HHHHHHH
Confidence 7776664
No 122
>KOG2380|consensus
Probab=98.89 E-value=2.1e-08 Score=99.05 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=114.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
..+|||||.|.||.-+|..|.++||.|...||+. .+.+.+..+. ...+.+.++++. .+|+|++|+.. ..++
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~----~~ft~lhdlcer--hpDvvLlctsi-lsie 122 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGS----AKFTLLHDLCER--HPDVVLLCTSI-LSIE 122 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcc----cccccHHHHHhc--CCCEEEEEehh-hhHH
Confidence 3579999999999999999999999999999985 4444443322 257889998876 49999999987 4889
Q ss_pred HHHHhhccc-CCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCccccccCC--ccCC----CCC----cchH
Q psy9637 84 DFIDKLVPL-LEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGEDGARYGP--SLMP----GGN----PAAW 151 (490)
Q Consensus 84 ~vl~~l~~~-l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~~a~~G~--~im~----GG~----~~a~ 151 (490)
.++...-+. ++.|++++|..+... ......++.-.+.+..+.+ |+.|.......++ .++. .|+ +|.+
T Consensus 123 kilatypfqrlrrgtlfvdvlSvKe-fek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~erc 201 (480)
T KOG2380|consen 123 KILATYPFQRLRRGTLFVDVLSVKE-FEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERC 201 (480)
T ss_pred HHHHhcCchhhccceeEeeeeecch-hHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHH
Confidence 998877765 889999999987653 3334445555566766666 5555543444333 3322 233 6888
Q ss_pred HHHHHHHHhhCCceeeCC
Q psy9637 152 PALKPIFQKLNPSFETSA 169 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g 169 (490)
|.+.+||...+.+.+++.
T Consensus 202 E~fleIf~cegckmVemS 219 (480)
T KOG2380|consen 202 EFFLEIFACEGCKMVEMS 219 (480)
T ss_pred HHHHHHHHhcCCeEEEEE
Confidence 999999999999877643
No 123
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.85 E-value=1.1e-08 Score=92.19 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=67.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.++|+|||.|..|.+.|+||.+.|++|++-.|..+ ..++..+.|.. ..+++|+++. +|+|++.+|+ +..
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~------v~~~~eAv~~---aDvV~~L~PD-~~q 73 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE------VMSVAEAVKK---ADVVMLLLPD-EVQ 73 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E------CCEHHHHHHC----SEEEE-S-H-HHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe------eccHHHHHhh---CCEEEEeCCh-HHH
Confidence 35899999999999999999999999999988766 56666666653 6799999987 9999999999 466
Q ss_pred HHHH-HhhcccCCCCCEEEcC
Q psy9637 83 DDFI-DKLVPLLEKGDIIIDG 102 (490)
Q Consensus 83 ~~vl-~~l~~~l~~g~iiId~ 102 (490)
.++. +++.|.|++|++++=.
T Consensus 74 ~~vy~~~I~p~l~~G~~L~fa 94 (165)
T PF07991_consen 74 PEVYEEEIAPNLKPGATLVFA 94 (165)
T ss_dssp HHHHHHHHHHHS-TT-EEEES
T ss_pred HHHHHHHHHhhCCCCCEEEeC
Confidence 6777 8899999999988644
No 124
>PLN02928 oxidoreductase family protein
Probab=98.84 E-value=3.2e-08 Score=101.71 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=88.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH----Hcc-cC-CCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL----ANE-AK-GTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~----~~g-~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
++|||||+|.||..+|++|...|.+|++|||+........ ... .. ........++++++.. +|+|++++|.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~---aDiVvl~lPl 236 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGE---ADIVVLCCTL 236 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhh---CCEEEECCCC
Confidence 5899999999999999999999999999999743211110 000 00 0000125688888887 9999999999
Q ss_pred CchHHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 79 GSAVDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 79 ~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
...++.++ .+.+..+++|.++|+++.+.--+...+.+.+....+.
T Consensus 237 t~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~ 282 (347)
T PLN02928 237 TKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG 282 (347)
T ss_pred ChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 88888888 5777889999999999998878888888888876554
No 125
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.81 E-value=3.4e-08 Score=98.18 Aligned_cols=110 Identities=14% Similarity=0.185 Sum_probs=81.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
+||||||+|.||..++.+|.+. +++|. +|||++++.+.+.+.... ...+++++++.+. +|+|++|+|+. .
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~---~~~~~~~eell~~---~D~Vvi~tp~~-~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR---PPPVVPLDQLATH---ADIVVEAAPAS-V 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC---CcccCCHHHHhcC---CCEEEECCCcH-H
Confidence 7899999999999999999874 78876 889999998887654221 1246889998765 89999999985 5
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
..++...+ |+.|+.|+..+.....+..++.+.++++|..+
T Consensus 80 h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 80 LRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred HHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 56665544 35676566555544445666667777777654
No 126
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.81 E-value=1.6e-08 Score=109.45 Aligned_cols=111 Identities=19% Similarity=0.254 Sum_probs=91.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+||+.... +...+.+ +...++++++++. +|+|++++|..+.++.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g-----~~~~~~l~ell~~---aDvV~l~lPlt~~T~~ 209 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLG-----VELVDDLDELLAR---ADFITVHTPLTPETRG 209 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcC-----CEEcCCHHHHHhh---CCEEEEccCCChhhcc
Confidence 58999999999999999999999999999985322 1222222 2235689999887 9999999999988888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
++ .+.+..+++|.++|+++.+..-+...+.+.+....+..
T Consensus 210 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 250 (525)
T TIGR01327 210 LIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRA 250 (525)
T ss_pred CcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeE
Confidence 88 56777899999999999999889899989988876643
No 127
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.78 E-value=2.2e-08 Score=108.54 Aligned_cols=109 Identities=18% Similarity=0.268 Sum_probs=90.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+|||+... +.....+. ..+ +++++++. +|+|++++|..+.++.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~-----~~~-~l~ell~~---aDiV~l~lP~t~~t~~ 210 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGV-----ELV-SLDELLAR---ADFITLHTPLTPETRG 210 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCC-----EEE-cHHHHHhh---CCEEEEccCCChHhhc
Confidence 58999999999999999999999999999986432 22222222 233 88998887 9999999999989998
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ .+.+..+++|.++|+++.+..-+...+.+.++...+.
T Consensus 211 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 250 (526)
T PRK13581 211 LIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVA 250 (526)
T ss_pred CcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCee
Confidence 88 6788889999999999999988888888888876543
No 128
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.74 E-value=3.1e-08 Score=102.59 Aligned_cols=106 Identities=15% Similarity=0.247 Sum_probs=86.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc----
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS---- 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~---- 80 (490)
++|||||+|.||..+|++|...|++|.+||+..... .+. ....+++++++. +|+|.+++|-..
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~-----~~~~~l~ell~~---aDiV~lh~Plt~~g~~ 183 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGD-----GDFVSLERILEE---CDVISLHTPLTKEGEH 183 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccC-----ccccCHHHHHhh---CCEEEEeCcCCCCccc
Confidence 589999999999999999999999999999864321 111 135689999887 999999999865
Q ss_pred hHHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 81 AVDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 81 ~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++...+ ++.+..+++|.++|+++.+...+...+.+.+....+.
T Consensus 184 ~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~ 227 (381)
T PRK00257 184 PTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDL 227 (381)
T ss_pred cccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCc
Confidence 466666 5677889999999999999988888888888766443
No 129
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.71 E-value=6.1e-08 Score=98.42 Aligned_cols=114 Identities=18% Similarity=0.386 Sum_probs=92.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|+.+|.++..-|.+|.+||+...+-.... . ......+++++++. +|+|.+.+|-.+.++.
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-~-----~~~~~~~Ld~lL~~---sDiv~lh~PlT~eT~g 213 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-D-----GVVGVDSLDELLAE---ADILTLHLPLTPETRG 213 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-c-----cceecccHHHHHhh---CCEEEEcCCCCcchhc
Confidence 5899999999999999999999999999999433221111 1 12357899999998 9999999999999998
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc--cccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL--YVGC 127 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~--~ld~ 127 (490)
++ .+.+..+++|.++|+++-+.--+...+.+.+.+..+. .+|.
T Consensus 214 ~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDV 259 (324)
T COG0111 214 LINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDV 259 (324)
T ss_pred ccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecC
Confidence 88 5677789999999999998888888888888776443 4454
No 130
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.68 E-value=1.2e-07 Score=96.16 Aligned_cols=109 Identities=18% Similarity=0.313 Sum_probs=90.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
+++||||+|++|..+|+++..-|.+|..|||++. -+.-...+. . +.++++++++ +|+|.+.+|....+..
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~-----~-y~~l~ell~~---sDii~l~~Plt~~T~h 216 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGA-----R-YVDLDELLAE---SDIISLHCPLTPETRH 216 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCc-----e-eccHHHHHHh---CCEEEEeCCCChHHhh
Confidence 6899999999999999999988889999999975 221111112 1 3349999988 9999999999999998
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.+ .+.+..+++|.++|+++-+.-.+...+.+.+++.-+.
T Consensus 217 Lin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIA 256 (324)
T ss_pred hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcc
Confidence 88 6677889999999999999888999999998887554
No 131
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.67 E-value=1.4e-07 Score=95.58 Aligned_cols=106 Identities=26% Similarity=0.391 Sum_probs=88.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|+.+|+.+..-|.+|.+|||+.... ..+ + ...+++++++. +|+|++++|-.+.++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~-----~-~~~~l~ell~~---sDvv~lh~Plt~~T~~ 212 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEE-----Y-ERVSLEELLKT---SDIISIHAPLNEKTKN 212 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccC-----c-eeecHHHHhhc---CCEEEEeCCCCchhhc
Confidence 589999999999999999999999999999964321 111 1 24588999887 9999999999988888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.+ ++.+..+++|.++|+++-+.--+...+.+.++...+.
T Consensus 213 li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 213 LIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred ccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE
Confidence 88 5677889999999999998888888888888876554
No 132
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.66 E-value=2.7e-07 Score=93.97 Aligned_cols=109 Identities=15% Similarity=0.243 Sum_probs=88.2
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMN-DHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|||||+|.+|..+|+++. .-|.+|..||+..... .....+. ...+++++++. +|+|++++|-...++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~-~~~~~~~------~~~~l~ell~~---sDvv~lh~plt~~T~ 215 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKE-AEERFNA------RYCDLDTLLQE---SDFVCIILPLTDETH 215 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchh-hHHhcCc------EecCHHHHHHh---CCEEEEeCCCChHHh
Confidence 68999999999999999997 7788999999874321 1112222 24589999887 999999999998898
Q ss_pred HHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 84 DFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 84 ~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
..+ .+.+..+++|.++|+++-+.--+...+.+.+....+.
T Consensus 216 ~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred hccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 888 5677889999999999998888888888888876554
No 133
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.64 E-value=8.2e-08 Score=95.74 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=63.3
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLA-VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG-~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|+|||.| .||.+||.+|.++|++|++|++.. .++++++.+ +|+||+|++.+..++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t-------------------~~l~e~~~~---ADIVIsavg~~~~v~ 217 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS-------------------TDAKALCRQ---ADIVVAAVGRPRLID 217 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC-------------------CCHHHHHhc---CCEEEEecCChhccc
Confidence 589999996 999999999999999999998752 367788877 999999999987666
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.+. +++|.+|||+|...
T Consensus 218 ~~~------ik~GaiVIDvgin~ 234 (301)
T PRK14194 218 ADW------LKPGAVVIDVGINR 234 (301)
T ss_pred Hhh------ccCCcEEEEecccc
Confidence 553 78999999999653
No 134
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.63 E-value=1.1e-07 Score=99.96 Aligned_cols=108 Identities=23% Similarity=0.326 Sum_probs=90.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|+.+|+++..-|.+|.+||+++... .+ .+....+++++++. +|+|.+++|....++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----~~----~~~~~~~l~ell~~---sDiVslh~Plt~~T~~ 219 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP-----LG----NARQVGSLEELLAQ---SDVVSLHVPETPSTKN 219 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc-----cC----CceecCCHHHHHhh---CCEEEEcCCCChHHhh
Confidence 589999999999999999999999999999874311 11 12345689999987 9999999999888888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+..
T Consensus 220 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 260 (409)
T PRK11790 220 MIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAG 260 (409)
T ss_pred ccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceE
Confidence 88 56778899999999999998888888888888776543
No 135
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.63 E-value=1.5e-07 Score=94.17 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=79.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|||+|.||..+|+.|...|++|+++||++++.+.+.+.+.. .....++.+++. .+|+||.++|..-..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~---~~~~~~l~~~l~---~aDiVint~P~~ii~-- 223 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLI---PFPLNKLEEKVA---EIDIVINTIPALVLT-- 223 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe---eecHHHHHHHhc---cCCEEEECCChHHhC--
Confidence 589999999999999999999999999999999887766544432 111233444444 499999999875211
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
.+.++.++++.+|||.++....+.. +..++.|+..+-+|
T Consensus 224 --~~~l~~~k~~aliIDlas~Pg~tdf---~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 224 --ADVLSKLPKHAVIIDLASKPGGTDF---EYAKKRGIKALLAP 262 (287)
T ss_pred --HHHHhcCCCCeEEEEeCcCCCCCCH---HHHHHCCCEEEEeC
Confidence 3445567889999999985433222 45566777665444
No 136
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.62 E-value=3.1e-07 Score=93.31 Aligned_cols=104 Identities=16% Similarity=0.251 Sum_probs=87.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|+.+|+.+..-|.+|.+|||.... ... ...+++++++. +|+|++++|-.+.++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~~------~~~~l~ell~~---sDiv~l~lPlt~~T~~ 213 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------ARP------DRLPLDELLPQ---VDALTLHCPLTEHTRH 213 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------ccc------cccCHHHHHHh---CCEEEECCCCChHHhc
Confidence 58999999999999999999999999999986321 011 13588998887 9999999999888888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.+ .+.+..+++|.++|+++-+.--+...+.+.+.+..+.
T Consensus 214 li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 214 LIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred CcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 88 6677889999999999998888888888888876554
No 137
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.61 E-value=1.3e-07 Score=97.67 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=84.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch---
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA--- 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~--- 81 (490)
++|||||+|.||+.+|++|..-|.+|.+||+.... . +.. ....+++++++. +|+|++.+|-...
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~----~~~----~~~~~L~ell~~---sDiI~lh~PLt~~g~~ 183 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R----GDE----GDFRSLDELVQE---ADILTFHTPLFKDGPY 183 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c----ccc----cccCCHHHHHhh---CCEEEEeCCCCCCccc
Confidence 58999999999999999999999999999975321 0 110 125689999887 8999999997653
Q ss_pred -HHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 82 -VDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 82 -v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
+...+ ++.+..+++|.++|+.+-+.--+...+.+.+++..+
T Consensus 184 ~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~ 226 (378)
T PRK15438 184 KTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK 226 (378)
T ss_pred ccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCC
Confidence 66666 567788999999999999888888888888876544
No 138
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.61 E-value=2.3e-07 Score=94.11 Aligned_cols=105 Identities=18% Similarity=0.288 Sum_probs=87.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|+.+|+.+..-|.+|.+||+.+.. .. .. ...+++++++. +|+|++++|-.+.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~------~~~~l~ell~~---sDiv~l~~Plt~~T~~ 213 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE------GYTPFEEVLKQ---ADIVTLHCPLTETTQN 213 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc------ccCCHHHHHHh---CCEEEEcCCCChHHhc
Confidence 58999999999999999999999999999986421 10 00 24589999887 9999999999888888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.+ .+.+..+++|.++|+++-+.--+...+.+.+.+..+.
T Consensus 214 li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 214 LINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred ccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 88 6677889999999999998888888888888876554
No 139
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.56 E-value=5.6e-07 Score=89.20 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=76.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--CCe-EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH--GFT-VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~--G~~-V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
||||||||+|.||..++..|.+. +++ +.++|+++++.+.+.+... ...++++++++.. +|+|++|+|+.
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~----~~~~~~~~ell~~---~DvVvi~a~~~- 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTG----AKACLSIDELVED---VDLVVECASVN- 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcC----CeeECCHHHHhcC---CCEEEEcCChH-
Confidence 36999999999999999999876 455 5579999999888765321 2357889988754 99999999874
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCC---ChHHHHHHHHHHHHcccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNS---EYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~---~~~~~~~~~~~l~~~gi~ 123 (490)
.+.+++..++ +.|.-++..+.. .....+++.+.+++.|..
T Consensus 73 ~~~~~~~~al---~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 73 AVEEVVPKSL---ENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred HHHHHHHHHH---HcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 6666665544 345545555542 333444555666666754
No 140
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.55 E-value=1.6e-07 Score=95.34 Aligned_cols=114 Identities=16% Similarity=0.157 Sum_probs=83.0
Q ss_pred CcEEEEcccHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMND--HGFTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.+|+|||+|.||..++..+.. ...+|.+|||++++.+.|.+.... +..+..+.++++++.+ +|+|++++|...+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~---aDIVi~aT~s~~p 202 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQ---ADIISCATLSTEP 202 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhc---CCEEEEeeCCCCC
Confidence 589999999999999885553 457899999999999998875321 1135567889988876 9999888887532
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
++.. ..+++|. +||+.++.+...++....+.+++..|+|-
T Consensus 203 ---vl~~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 203 ---LVRG--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred ---EecH--HHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 2321 3467887 66766666666666666666666667775
No 141
>PLN02306 hydroxypyruvate reductase
Probab=98.51 E-value=6.5e-07 Score=93.09 Aligned_cols=116 Identities=15% Similarity=0.275 Sum_probs=88.4
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCeEEEEeCChHH-HHHHHH-cc-------cCCCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 5 GDIGLIGLAVMGQNLILNMN-DHGFTVVAYNRTTAK-VDSFLA-NE-------AKGTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~-~~G~~V~v~dr~~~~-~~~l~~-~g-------~~~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
++|||||+|.+|+.+|++|. .-|.+|.+||+++.. .+.+.. .+ .....+....+++++++. +|+|++
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~---sDiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE---ADVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh---CCEEEE
Confidence 58999999999999999986 679999999998642 221111 11 000011224588999887 999999
Q ss_pred ecCCCchHHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 75 LVKAGSAVDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 75 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++|-...++..+ .+.+..+++|.++|+++-+.--+...+.+.++...+.
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~ 292 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMF 292 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCee
Confidence 999988888888 5677889999999999998878888888888776554
No 142
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=98.47 E-value=5.5e-07 Score=89.31 Aligned_cols=107 Identities=22% Similarity=0.238 Sum_probs=81.9
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCC-CCCc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDT-DGAP 427 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~-~~~~ 427 (490)
+.|+|+.|+||.+||++|-+--+.|++++|++.|.++ +|+ |...+++.-++|+-+||.+|.-..-.-+.|- .+ .
T Consensus 158 i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k-~Gl---d~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~-F 232 (286)
T COG2084 158 IVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEK-AGL---DPDVVLEVISGGAAGSWILENYGPRMLEGDFSPG-F 232 (286)
T ss_pred eEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHhccccCChHHHhhcchhhcCCCCcc-h
Confidence 5689999999999999999999999999999999998 898 6788888888888899998875432222232 22 2
Q ss_pred chhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHH
Q psy9637 428 LVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSR 466 (490)
Q Consensus 428 ~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r 466 (490)
.++.... .-+-...+|.+.++|+|+.+.+....
T Consensus 233 ~v~~~~K------Dl~la~~~A~~~g~~lP~~~~~~~ly 265 (286)
T COG2084 233 AVDLMLK------DLGLALDAAKELGAPLPLTALAAELY 265 (286)
T ss_pred hHHHHHH------HHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3333332 23366788999999999887776553
No 143
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.46 E-value=1.1e-05 Score=76.33 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=81.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|+|+|||. |.||..++..|.++||.|++ . ++|+||+|+|.. .+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------~---~~DlVilavPv~-~~~ 45 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------K---KADHAFLSVPID-AAL 45 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------C---CCCEEEEeCCHH-HHH
Confidence 48999998 99999999999999999851 1 289999999995 777
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCccccccC---CccCC--CCCcchHHHHHHH
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGEDGARYG---PSLMP--GGNPAAWPALKPI 157 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~~a~~G---~~im~--GG~~~a~~~v~~l 157 (490)
++++++. .+|+|.+++...- . +.+..|+.. |++| +..+..+ ..+++ ..++++.+.++.+
T Consensus 46 ~~i~~~~------~~v~Dv~SvK~~i----~----~~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~~l 110 (197)
T PRK06444 46 NYIESYD------NNFVEISSVKWPF----K----KYSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEINEM 110 (197)
T ss_pred HHHHHhC------CeEEeccccCHHH----H----HhcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHHHH
Confidence 7777664 3799999987421 1 124467777 6665 5555443 33333 2344667888999
Q ss_pred HHhhCCceeeCCC
Q psy9637 158 FQKLNPSFETSAP 170 (490)
Q Consensus 158 l~~l~~~~~~~g~ 170 (490)
++ +.+++.+.+
T Consensus 111 ~~--G~~~~~~t~ 121 (197)
T PRK06444 111 FR--GYHFVEMTA 121 (197)
T ss_pred Hc--CCEEEEeCH
Confidence 88 777766655
No 144
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=98.46 E-value=8.3e-07 Score=77.39 Aligned_cols=99 Identities=21% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHH--HhcccCCCCCcchhhhc
Q psy9637 356 GAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKD--ILKFKDTDGAPLVEKIK 433 (490)
Q Consensus 356 g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~--~~~~~~~~~~~~l~~i~ 433 (490)
|+|+.+|+++|-+.++++++++|++.+.++ .|+ |..++++.-+.++..||.++.-.. ++. .+.+....++.+.
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~-~Gl---d~~~~~~vl~~~~~~s~~~~~~~~~~~~~-~~~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEK-AGL---DPEQLLDVLSAGSGGSWMLKNRAPRMILN-GDFDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTS----HHHHHHHHHTSTTHBHHHHHHHHHHHHT-TTTCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC---CHHHHHHHHccCCcCchHHHhhhhhhhhc-ccCCccchhHhhc
Confidence 789999999999999999999999999998 898 778888888888888888875543 443 2322223455554
Q ss_pred cccCCCcchHHHHHHHHhcCCCchhhHHHHHH
Q psy9637 434 DYAGQKGTGKWTAISALDYGVPVTLIGESVFS 465 (490)
Q Consensus 434 ~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~ 465 (490)
.- -+=.++.|.+.|+|+|+...+...
T Consensus 76 KD------l~l~~~~a~~~g~~~p~~~~~~~~ 101 (122)
T PF14833_consen 76 KD------LRLALDLAKEAGVPLPLGSAARQL 101 (122)
T ss_dssp HH------HHHHHHHHHHTT---HHHHHHHHH
T ss_pred cH------HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 42 337888999999999998887644
No 145
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.46 E-value=6e-06 Score=79.09 Aligned_cols=187 Identities=10% Similarity=0.090 Sum_probs=125.2
Q ss_pred CCcEEEEcccHH--------------------HHHHHHHHHHCCCeEEEEeCChH-----HHHHHHHcccCCCCeeccCC
Q psy9637 4 KGDIGLIGLAVM--------------------GQNLILNMNDHGFTVVAYNRTTA-----KVDSFLANEAKGTNIIGAHS 58 (490)
Q Consensus 4 ~~~IgiIGlG~M--------------------G~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~g~~~~~i~~~~s 58 (490)
+|||.|.|.|+- |..||..++++||+|++.|+|.+ ..+++.+.| ++.+++
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAG-----V~vv~d 75 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAG-----VEVVSD 75 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcC-----cEEecC
Confidence 368999998864 67799999999999999987654 344444444 446778
Q ss_pred HHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHH-HHHHH----cccc-ccccCCCCC
Q psy9637 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRS-KALEA----KGLL-YVGCGVSGG 132 (490)
Q Consensus 59 ~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~-~~l~~----~gi~-~ld~~vsGg 132 (490)
-.+.++. .++.++-+|-+..+-.+..+|+++++.|.+|.+..|++|...-... ..++. -|+. +-.++|-|.
T Consensus 76 D~eaa~~---~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGt 152 (340)
T COG4007 76 DAEAAEH---GEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGT 152 (340)
T ss_pred chhhhhc---ceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCC
Confidence 8888877 8999999999999999999999999999999999998876554433 22322 1443 333445444
Q ss_pred ccccccCCccCCC--------CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 133 EDGARYGPSLMPG--------GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLM 204 (490)
Q Consensus 133 ~~~a~~G~~im~G--------G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la 204 (490)
|. +|.-+..| ..++.++++.++.++.|...+...+. .-..+-....++.+..+.+..+-+..+
T Consensus 153 p~---h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~pad------v~s~VaDmg~lvtav~l~gvldyy~Vg 223 (340)
T COG4007 153 PQ---HGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPAD------VVSAVADMGVLVTAVALSGVLDYYYVG 223 (340)
T ss_pred CC---CceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHH------HHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 43 22222211 24577889999999999877654331 112233333445555555655555555
Q ss_pred HHH
Q psy9637 205 RQA 207 (490)
Q Consensus 205 ~~a 207 (490)
++.
T Consensus 224 ~qI 226 (340)
T COG4007 224 TQI 226 (340)
T ss_pred HHH
Confidence 543
No 146
>KOG0069|consensus
Probab=98.44 E-value=1.3e-06 Score=88.14 Aligned_cols=107 Identities=17% Similarity=0.330 Sum_probs=89.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||+|+|++|..+|++|..-|..+.-++|++...+...+.+.. ..+..+++.+ +|+|++++|..+.+..
T Consensus 163 K~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~------~~d~~~~~~~---sD~ivv~~pLt~~T~~ 233 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE------FVDIEELLAN---SDVIVVNCPLTKETRH 233 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc------ccCHHHHHhh---CCEEEEecCCCHHHHH
Confidence 589999999999999999999995555567776666666555442 5688888887 9999999999999999
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK 120 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~ 120 (490)
++ .+++..+++|.+||+++-+..-+.+...+.+++.
T Consensus 234 liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 234 LINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred HhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 99 6788899999999999998888888777777654
No 147
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.43 E-value=7.2e-07 Score=89.69 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=77.3
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCCCCCcc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPL 428 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~~~~~~ 428 (490)
+.|+|+.|+|+.+|+|||.+-+++|++++|++.+.++ .|+ |..++++..+.+..+||.++.-...+...|-+....
T Consensus 156 ~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~-~Gl---d~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~ 231 (292)
T PRK15059 156 ITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASK-AGA---DPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFK 231 (292)
T ss_pred cEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCc
Confidence 5689999999999999999999999999999999997 898 556666666777788998876654333222111122
Q ss_pred hhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 429 VEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 429 l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
++.... .-+-.++.|.+.|+|+|+...+.
T Consensus 232 l~~~~K------Dl~l~~~~a~~~g~~~p~~~~~~ 260 (292)
T PRK15059 232 IALHQK------DLNLALQSAKALALNLPNTATCQ 260 (292)
T ss_pred hHHHHH------HHHHHHHHHHHcCCCChHHHHHH
Confidence 333332 33477888999999999766544
No 148
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.41 E-value=1.4e-06 Score=78.46 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=73.8
Q ss_pred EEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---CC---Ce---eccCCHHHHHhhCCCCcEEEEecC
Q psy9637 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---GT---NI---IGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 7 IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---~~---~i---~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|.|+|.|.||..+|..|.++|++|+++.|++ ..+.+.+.+.. .. .+ ....+..+... .+|+||+|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAG---PYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHS---TESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccC---CCcEEEEEec
Confidence 7899999999999999999999999999998 78877765543 00 01 11122212223 4899999999
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
+. +++++++.+.+.+.++..|+-..|+..
T Consensus 77 a~-~~~~~l~~l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 77 AY-QLEQALQSLKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp GG-GHHHHHHHHCTGEETTEEEEEESSSSS
T ss_pred cc-chHHHHHHHhhccCCCcEEEEEeCCCC
Confidence 95 899999999999999989999989864
No 149
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.41 E-value=7e-07 Score=89.26 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=61.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEe-CChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYN-RTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~d-r~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
++|+||| .|.||.+||.+|.++|++|++|+ |++ ++++++++ +|+|++|++.+..+
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~--------------------~l~e~~~~---ADIVIsavg~~~~v 215 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR--------------------DLPAVCRR---ADILVAAVGRPEMV 215 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC--------------------CHHHHHhc---CCEEEEecCChhhc
Confidence 5899999 99999999999999999999995 553 35666666 89999999998665
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+.++ +++|.+|||+|...
T Consensus 216 ~~~~------lk~GavVIDvGin~ 233 (296)
T PRK14188 216 KGDW------IKPGATVIDVGINR 233 (296)
T ss_pred chhe------ecCCCEEEEcCCcc
Confidence 5543 78999999999753
No 150
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.39 E-value=1.6e-06 Score=87.30 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=77.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
.+++|||.|.+|..++..|.+.|.+|+++||++++.+.....+.. .....++.+.+. .+|+||.++|...
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~---~~~~~~l~~~l~---~aDiVI~t~p~~~---- 222 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLS---PFHLSELAEEVG---KIDIIFNTIPALV---- 222 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCe---eecHHHHHHHhC---CCCEEEECCChhh----
Confidence 689999999999999999999999999999998887666554432 111234444444 4999999998642
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
+-++.+..++++.+|||.++.... +.- +..+++|+..+.
T Consensus 223 i~~~~l~~~~~g~vIIDla~~pgg-td~--~~a~~~Gv~~~~ 261 (296)
T PRK08306 223 LTKEVLSKMPPEALIIDLASKPGG-TDF--EYAEKRGIKALL 261 (296)
T ss_pred hhHHHHHcCCCCcEEEEEccCCCC-cCe--eehhhCCeEEEE
Confidence 124455667899999999875433 221 234556665544
No 151
>KOG2304|consensus
Probab=98.38 E-value=1.8e-06 Score=81.32 Aligned_cols=198 Identities=13% Similarity=0.143 Sum_probs=117.3
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-----------ccCC-------------CCeecc
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-----------EAKG-------------TNIIGA 56 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------g~~~-------------~~i~~~ 56 (490)
|..++.|+|||.|.||+.+|+--+..|++|.++|++++++.+..+. .... .++..+
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~ 87 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS 87 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence 3455789999999999999999999999999999998876654321 1000 123445
Q ss_pred CCHHHHHhhCCCCcEEEEecCCCchHHH-HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHH----HHcccccccc-CCC
Q psy9637 57 HSLEELVKNLKKPRRVMMLVKAGSAVDD-FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKAL----EAKGLLYVGC-GVS 130 (490)
Q Consensus 57 ~s~~e~v~~l~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l----~~~gi~~ld~-~vs 130 (490)
++..+++.+ +|+||-++-....++. ++.++-...++..++.. .|++..-+ ++...+ .-.|.||+.. ||.
T Consensus 88 tnv~~~v~d---adliiEAivEn~diK~~lF~~l~~~ak~~~il~t-NTSSl~lt-~ia~~~~~~srf~GlHFfNPvPvM 162 (298)
T KOG2304|consen 88 TNVSDAVSD---ADLIIEAIVENLDIKRKLFKDLDKIAKSSTILAT-NTSSLSLT-DIASATQRPSRFAGLHFFNPVPVM 162 (298)
T ss_pred CCHHHhhhh---hHHHHHHHHHhHHHHHHHHHHHHhhcccceEEee-cccceeHH-HHHhhccChhhhceeeccCCchhH
Confidence 666666665 7888776655444442 33445444545555543 33332222 222222 2247887754 443
Q ss_pred CCccccccCCccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 131 GGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEI 210 (490)
Q Consensus 131 Gg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~ 210 (490)
--.+-.+.- --+++.|..+..+-+.++...+.+-... | ..+ | -..+-.+.|++.+.++=
T Consensus 163 KLvEVir~~-----~TS~eTf~~l~~f~k~~gKttVackDtp---G---FIV----N---RlLiPyl~ea~r~yerG--- 221 (298)
T KOG2304|consen 163 KLVEVIRTD-----DTSDETFNALVDFGKAVGKTTVACKDTP---G---FIV----N---RLLIPYLMEAIRMYERG--- 221 (298)
T ss_pred HHhhhhcCC-----CCCHHHHHHHHHHHHHhCCCceeecCCC---c---hhh----h---HHHHHHHHHHHHHHHhc---
Confidence 322221111 1246888888898899998777664431 1 111 1 12345677888888875
Q ss_pred hCCCCCHHHHHHHHhcc
Q psy9637 211 HGWKLNYGGIALMWRGG 227 (490)
Q Consensus 211 ~~~Gld~~~v~~i~~~g 227 (490)
....+++-..++-|
T Consensus 222 ---dAskeDIDtaMklG 235 (298)
T KOG2304|consen 222 ---DASKEDIDTAMKLG 235 (298)
T ss_pred ---CCcHhhHHHHHhcc
Confidence 44555555554433
No 152
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.37 E-value=1.1e-06 Score=87.39 Aligned_cols=117 Identities=19% Similarity=0.181 Sum_probs=80.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc--hH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS--AV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~--~v 82 (490)
+++.|+|.|.+|.+++..|++.|++|+++||++++.+.+.+.-.....+. ..++.+.. +..+|+||.|+|.+. .+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~-~~~~~~~~--~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQ-AFSMDELP--LHRVDLIINATSAGMSGNI 194 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceE-Eechhhhc--ccCccEEEECCCCCCCCCC
Confidence 57999999999999999999999999999999998888765421101111 22333322 234899999999862 22
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
+++.- ....+.++.+++|++...+. | ...+.++++|+.++|.
T Consensus 195 ~~~~~-~~~~l~~~~~v~D~~y~p~~-T-~ll~~A~~~G~~~vdG 236 (270)
T TIGR00507 195 DEPPV-PAEKLKEGMVVYDMVYNPGE-T-PFLAEAKSLGTKTIDG 236 (270)
T ss_pred CCCCC-CHHHcCCCCEEEEeccCCCC-C-HHHHHHHHCCCeeeCC
Confidence 21100 02346789999999886544 4 4667778888876654
No 153
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.31 E-value=3.3e-06 Score=85.71 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=68.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.++|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... .+...+++.+.+. .+|+||.++|.+..
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~--~~~~~~~~~~~l~---~aDvVi~at~~~~~- 251 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG--NAVPLDELLELLN---EADVVISATGAPHY- 251 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC--eEEeHHHHHHHHh---cCCEEEECCCCCch-
Confidence 368999999999999999999866 7899999999998887765321 1212223444444 49999999998755
Q ss_pred HHHHHhhcccC-CCCCEEEcCCC
Q psy9637 83 DDFIDKLVPLL-EKGDIIIDGGN 104 (490)
Q Consensus 83 ~~vl~~l~~~l-~~g~iiId~s~ 104 (490)
..++..+.... .++.+|||.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 252 AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred HHHHHHHHhhCCCCCeEEEEeCC
Confidence 44444443322 35789999985
No 154
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.31 E-value=3.8e-05 Score=75.30 Aligned_cols=128 Identities=13% Similarity=0.182 Sum_probs=86.9
Q ss_pred CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 27 GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 27 G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
-++|.+|||++++.+.+.+... +..+.+..++++. +|+||+||++ ..+++++.++.+.+.++++||...++.
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g----~~~~~~~~e~~~~---aDiIiLaVkP-~~i~~vl~~l~~~~~~~~~ivS~~agi 80 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELG----IVASSDAQEAVKE---ADVVFLAVKP-QDLEEVLSELKSEKGKDKLLISIAAGV 80 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcC----cEEeCChHHHHhh---CCEEEEEeCH-HHHHHHHHHHhhhccCCCEEEEecCCC
Confidence 3689999999999888866421 2356788888877 8999999995 699999999988777789999998877
Q ss_pred hHHHHHHHHHHHHccccc-cccCCCCCccccccCCccCCCC---CcchHHHHHHHHHhhCCceee
Q psy9637 107 YQDTDRRSKALEAKGLLY-VGCGVSGGEDGARYGPSLMPGG---NPAAWPALKPIFQKLNPSFET 167 (490)
Q Consensus 107 ~~~~~~~~~~l~~~gi~~-ld~~vsGg~~~a~~G~~im~GG---~~~a~~~v~~ll~~l~~~~~~ 167 (490)
+....+ +.+. .+... --+|- .+.....|.+.+..+ +++..+.++.+|+.+|..+..
T Consensus 81 ~~~~l~--~~~~-~~~~ivR~mPn--~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v 140 (245)
T TIGR00112 81 TLEKLS--QLLG-GTRRVVRVMPN--TPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL 140 (245)
T ss_pred CHHHHH--HHcC-CCCeEEEECCC--hHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 544332 2232 11111 12232 122334565333333 335678899999999986644
No 155
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.29 E-value=6.6e-06 Score=84.94 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=92.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCC-e-eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTN-I-IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~-i-~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
||+|-|||+|.+|+..|..|+++| ++|++-||++++.+++........+ + .-+.+.+.+.+-+++.|+||.++|..
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~- 79 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF- 79 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch-
Confidence 468999999999999999999999 9999999999999998765321100 0 11344545555555589999999986
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc-cccCCCCCccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY-VGCGVSGGEDG 135 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~-ld~~vsGg~~~ 135 (490)
....+++.. ++.|.-++|.+...+.. .++.+.+++.|+.. +++++.-|...
T Consensus 80 ~~~~i~ka~---i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~n 131 (389)
T COG1748 80 VDLTILKAC---IKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGITN 131 (389)
T ss_pred hhHHHHHHH---HHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchHH
Confidence 444554443 45789999999866553 66667778888764 57777666543
No 156
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.28 E-value=1.2e-05 Score=69.28 Aligned_cols=110 Identities=18% Similarity=0.339 Sum_probs=79.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
+||||||+|.+|......+.+. +++|+ ++|+++++.+.+.+... +..++|++++++. +.+|+|++++|+...
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~----~~~~~~~~~ll~~-~~~D~V~I~tp~~~h 75 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG----IPVYTDLEELLAD-EDVDAVIIATPPSSH 75 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT----SEEESSHHHHHHH-TTESEEEEESSGGGH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc----ccchhHHHHHHHh-hcCCEEEEecCCcch
Confidence 3899999999999999998877 45654 78999999998865532 2368999999984 248999999999754
Q ss_pred HHHHHHhhcccCCCC-CEEEcCC-CCChHHHHHHHHHHHHcccc
Q psy9637 82 VDDFIDKLVPLLEKG-DIIIDGG-NSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 82 v~~vl~~l~~~l~~g-~iiId~s-~~~~~~~~~~~~~l~~~gi~ 123 (490)
.+ .+..++. .| .++++-= .....+..++.+..+++|..
T Consensus 76 ~~-~~~~~l~---~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 76 AE-IAKKALE---AGKHVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp HH-HHHHHHH---TTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred HH-HHHHHHH---cCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 44 3333333 22 5677631 22457777777888877764
No 157
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.27 E-value=2.3e-06 Score=85.80 Aligned_cols=105 Identities=19% Similarity=0.118 Sum_probs=74.9
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHH-------hccc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDI-------LKFK 421 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~-------~~~~ 421 (490)
+.|+|+.|+||.+||++|.+.++.|++++|++.+.++ .|+ |..++++..+.+..+||..+.-... ....
T Consensus 153 ~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gl---d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 228 (288)
T TIGR01692 153 IVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEK-LGL---DPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASN 228 (288)
T ss_pred eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHhcCCccCcHHHHhCCCccccccccccC
Confidence 5589999999999999999999999999999999997 898 6677777788777778876543221 0111
Q ss_pred CCCCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 422 DTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 422 ~~~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
|-+....++.... .-++..+.|.+.|+|+|+...+.
T Consensus 229 ~~~~~f~~~~~~K------Dl~~~~~~a~~~g~~~p~~~~~~ 264 (288)
T TIGR01692 229 GYQGGFGTALMLK------DLGLAQDAAKSAGAPTPLGALAR 264 (288)
T ss_pred CCCCCcchHHHHh------hHHHHHHHHHHcCCCChHHHHHH
Confidence 2111111222221 34488899999999999765544
No 158
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.24 E-value=2.6e-06 Score=84.48 Aligned_cols=74 Identities=19% Similarity=0.326 Sum_probs=62.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|+|||. |.||.+||.+|.++|++|++|... +.++++.+.+ +|+||+|++.+..++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~-------------------t~~l~~~~~~---ADIVI~avg~~~~v~ 216 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR-------------------TRNLAEVARK---ADILVVAIGRGHFVT 216 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC-------------------CCCHHHHHhh---CCEEEEecCccccCC
Confidence 58999999 999999999999999999999321 3467787777 999999999987766
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
... +++|.+|||+|...
T Consensus 217 ~~~------ik~GavVIDvgin~ 233 (284)
T PRK14179 217 KEF------VKEGAVVIDVGMNR 233 (284)
T ss_pred HHH------ccCCcEEEEeccee
Confidence 543 78999999999653
No 159
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.23 E-value=3.9e-06 Score=82.43 Aligned_cols=85 Identities=22% Similarity=0.370 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH-HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK-VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|+|||.|.-|.+-|+||.++|.+|++--|.... .+...+.|.. +.+++|++.. +|+|++.+|+. .-.
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~------V~~v~ea~k~---ADvim~L~PDe-~q~ 88 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK------VYTVEEAAKR---ADVVMILLPDE-QQK 88 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE------eecHHHHhhc---CCEEEEeCchh-hHH
Confidence 58999999999999999999999999887665444 5555555543 7899999987 99999999995 666
Q ss_pred HHHH-hhcccCCCCCEE
Q psy9637 84 DFID-KLVPLLEKGDII 99 (490)
Q Consensus 84 ~vl~-~l~~~l~~g~ii 99 (490)
+|.+ ++.|.|++|+.+
T Consensus 89 ~vy~~~I~p~Lk~G~aL 105 (338)
T COG0059 89 EVYEKEIAPNLKEGAAL 105 (338)
T ss_pred HHHHHHhhhhhcCCceE
Confidence 7775 899999999865
No 160
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.20 E-value=7.5e-06 Score=68.27 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhH
Q psy9637 178 KKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFF 257 (490)
Q Consensus 178 ~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f 257 (490)
.|+++|++.|++.+.+++..+|...++++. |+|..++.+.+.... ++....+.|++
T Consensus 3 ~AEl~K~~~N~~~a~~iaf~Nel~~lce~~------giD~~~V~~~~~~d~------------------ri~~~~~~pg~ 58 (96)
T PF00984_consen 3 EAELIKYAENAFRATKIAFANELARLCEKL------GIDVYEVIEAANTDP------------------RIGPHYLRPGP 58 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TSBHHHHHHHHHTST------------------TTTSSS-S-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHccCc------------------ccccccCCCCC
Confidence 589999999999999999999999999999 999999999986443 22233445554
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q psy9637 258 KDAIHATQSSWRAVVSQSALLGIPTPAFATALAFY 292 (490)
Q Consensus 258 ~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~ 292 (490)
...-.++.||...++..+++.|.+.++++++.+.-
T Consensus 59 g~GG~ClpkD~~~L~~~~~~~g~~~~ll~~~~~~N 93 (96)
T PF00984_consen 59 GFGGSCLPKDPYALIYLAKELGYPPQLLEAVININ 93 (96)
T ss_dssp S--SSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred CCCCcchhhhHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 44556789999999999999999999999887653
No 161
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.18 E-value=3.1e-06 Score=75.23 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=65.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe-EEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT-VVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.++.|||+|.||+.++..|.+.|.+ |+++||+.++++.+.+.... .-.+...+++.+.... +|+||.++|.+...
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~---~DivI~aT~~~~~~ 89 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQE---ADIVINATPSGMPI 89 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHT---ESEEEE-SSTTSTS
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhh---CCeEEEecCCCCcc
Confidence 5899999999999999999999987 99999999999998876421 1112334455555555 89999999997541
Q ss_pred HHHHHhhcccCCCC-CEEEcCCC
Q psy9637 83 DDFIDKLVPLLEKG-DIIIDGGN 104 (490)
Q Consensus 83 ~~vl~~l~~~l~~g-~iiId~s~ 104 (490)
+-.+.++...+. .+++|.+.
T Consensus 90 --i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 90 --ITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp --STHHHHTTTCHHCSEEEES-S
T ss_pred --cCHHHHHHHHhhhhceecccc
Confidence 112222222121 49999974
No 162
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.13 E-value=7e-06 Score=83.82 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=71.8
Q ss_pred CcEEEEcccHHHHHHHHHHH--HCCCeEEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMN--DHGFTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~--~~G~~V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.++||||+|.||...+..|. ....+|.+|||++++.+.|.+.-.. +..+..++++++++++ +|+|++|+|+.++
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~---aDiVitaT~s~~P 205 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEG---CDILVTTTPSRKP 205 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhcc---CCEEEEecCCCCc
Confidence 57999999999999666654 4557899999999999888764211 2235568999999987 9999999998754
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
+ +. ...+++|..|.-.|+..|
T Consensus 206 ~---~~--~~~l~~g~~v~~vGs~~p 226 (325)
T TIGR02371 206 V---VK--ADWVSEGTHINAIGADAP 226 (325)
T ss_pred E---ec--HHHcCCCCEEEecCCCCc
Confidence 3 21 124689999988887654
No 163
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.13 E-value=6.9e-06 Score=71.41 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=63.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHHC-CCeEEEE-eCChHHHHHHHHcccCCCCe-eccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDH-GFTVVAY-NRTTAKVDSFLANEAKGTNI-IGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~-G~~V~v~-dr~~~~~~~l~~~g~~~~~i-~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
||+||| .|.+|..++..|.++ ++++... ++++++.+.+...+..-..+ ....+..++.. ..+|+||+|+|++ .
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DvV~~~~~~~-~ 77 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEE--LAVDIVFLALPHG-V 77 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhh--cCCCEEEEcCCcH-H
Confidence 699999 599999999999984 8887765 66544433333322110001 00111122221 2489999999997 5
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
..+++..+.+.+.+|.+|||+|+..
T Consensus 78 ~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 78 SKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred HHHHHHHHHhhhcCCCEEEECCccc
Confidence 5665555566678999999999865
No 164
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.11 E-value=1e-05 Score=81.31 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=74.2
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCCCCCcc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPL 428 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~~~~~~ 428 (490)
+.|+|+.|+||.+|+++|.+.++++++++|++.++++ .|+ |..++++.|+.+..+|+.++.-..-+.+.|-+....
T Consensus 159 ~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi---~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~ 234 (296)
T PRK11559 159 VVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATK-AGV---NPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFR 234 (296)
T ss_pred eEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcc
Confidence 4578999999999999999999999999999999997 788 567778888887778887765433222122110011
Q ss_pred hhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 429 VEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 429 l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
++.... .-+-.++.|.+.|+|+|+...+.
T Consensus 235 ~~~~~K------Dl~~~~~~a~~~g~~~p~~~~~~ 263 (296)
T PRK11559 235 IDLHIK------DLANALDTSHGVGAPLPLTAAVM 263 (296)
T ss_pred hHHHHH------HHHHHHHHHHHcCCCChHHHHHH
Confidence 221111 12245678899999999766555
No 165
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.09 E-value=1.5e-05 Score=80.70 Aligned_cols=97 Identities=16% Similarity=0.221 Sum_probs=65.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----ccc---CCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLA----NEA---KGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~----~g~---~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|+||+|||+|.||..+|..++..|+ +|+++|+++++.+.... ... ...+++.+.+.++ +.. +|+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~~---aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IAG---SDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HCC---CCEEEEC
Confidence 5799999999999999999999876 99999998876654221 111 0123444456644 333 8999998
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+..+. .+++++..+.+.. ++.++|..+|.
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP 121 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNP 121 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 73221 2445556666665 56677777763
No 166
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.06 E-value=8e-06 Score=85.13 Aligned_cols=86 Identities=23% Similarity=0.300 Sum_probs=68.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEE------eCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAY------NRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~------dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
++|+|||+|..|.+.|.||...|++|++- |.+.+..+.+.+.|. ...++.|++.. +|+|++.+|+
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF------~v~~~~Ea~~~---ADvVviLlPD 107 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF------KVGTYEELIPQ---ADLVINLTPD 107 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC------ccCCHHHHHHh---CCEEEEcCCh
Confidence 68999999999999999999999999943 333445555554443 24678888887 9999999999
Q ss_pred CchHHHHHHhhcccCCCCCEEE
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIII 100 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiI 100 (490)
. .-..+.+++.|.|++|.++.
T Consensus 108 t-~q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 108 K-QHSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred H-HHHHHHHHHHhhCCCCCEEE
Confidence 7 56667799999999998764
No 167
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=98.02 E-value=1.9e-05 Score=79.35 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=76.6
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCCCCCcc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPL 428 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~~~~~~ 428 (490)
+.|+|+.|+|+.+|+++|.+.+..+++++|++.++++ .|+ |..++++..+.+..+||+++...+.+...|-+....
T Consensus 156 ~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi---d~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~ 231 (291)
T TIGR01505 156 IVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASK-AGV---DPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFR 231 (291)
T ss_pred eEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcc
Confidence 4579999999999999999999999999999999998 888 555666666766678898877654433222111122
Q ss_pred hhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 429 VEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 429 l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
++.... .-+.....|.+.|+|.|+..++.
T Consensus 232 ~~~~~K------Dl~~~~~~a~~~g~~~~~~~~~~ 260 (291)
T TIGR01505 232 IDLHQK------DLNLALDSAKAVGANLPNTATVQ 260 (291)
T ss_pred hHHHHH------HHHHHHHHHHHcCCCChhHHHHH
Confidence 222222 23467888999999999777665
No 168
>PLN00203 glutamyl-tRNA reductase
Probab=98.01 E-value=2.4e-05 Score=84.37 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=69.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
..+|+|||+|.||..++..|...|+ +|+++||++++.+.+.+... ....+...+++.+++.. +|+||.|++.+.+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~---aDVVIsAT~s~~p 342 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAE---ADVVFTSTSSETP 342 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhc---CCEEEEccCCCCC
Confidence 3689999999999999999999997 79999999999998876521 10011233455555554 9999999987765
Q ss_pred --HHHHHHhhcccC---CCCCEEEcCCC
Q psy9637 82 --VDDFIDKLVPLL---EKGDIIIDGGN 104 (490)
Q Consensus 82 --v~~vl~~l~~~l---~~g~iiId~s~ 104 (490)
..+.++.+.+.- .+..++||.+-
T Consensus 343 vI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 343 LFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred eeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 345555543321 12358999874
No 169
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.00 E-value=3.8e-05 Score=81.16 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=70.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|||+|.+|..+|.+|...|.+|+++|+++.+.......|.. ..+++++++. +|+|++++.. ..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~------~~~leell~~---ADIVI~atGt----~~ 321 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQ------VVTLEDVVET---ADIFVTATGN----KD 321 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCce------eccHHHHHhc---CCEEEECCCc----cc
Confidence 589999999999999999999999999999998776444443332 3567887776 9999998643 33
Q ss_pred HH-HhhcccCCCCCEEEcCCCCC
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~ 106 (490)
++ .+.+..+++|.++|+.|...
T Consensus 322 iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 322 IITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred ccCHHHHhccCCCcEEEEcCCCc
Confidence 45 35667789999999998763
No 170
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.99 E-value=2e-05 Score=79.49 Aligned_cols=104 Identities=21% Similarity=0.131 Sum_probs=71.2
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHH-HHHH-HHhcccCCCCC
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLI-EITK-DILKFKDTDGA 426 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~-~~~~-~~~~~~~~~~~ 426 (490)
+.|+|+.|+||.+|+++|-+.++++++++|++.++++ .|++. ..+++..+.++..|+.+ .... .++. .|-+..
T Consensus 158 ~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~-~Gld~---~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 232 (296)
T PRK15461 158 LINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEA-LGLSF---DVALKVMSGTAAGKGHFTTTWPNKVLK-GDLSPA 232 (296)
T ss_pred eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCH---HHHHHHHhcCcccChHHHccccchhcc-CCCCCC
Confidence 4589999999999999999999999999999999997 89954 45555565555333333 2222 3333 232211
Q ss_pred cchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 427 PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 427 ~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
..++.... .-+-..+.|.+.|+|+|+...+.
T Consensus 233 f~~~~~~K------D~~l~~~~a~~~g~~~p~~~~~~ 263 (296)
T PRK15461 233 FMIDLAHK------DLGIALDVANQLHVPMPLGAASR 263 (296)
T ss_pred cchHHHHh------hHHHHHHHHHHcCCCChHHHHHH
Confidence 23333332 33478889999999999766554
No 171
>KOG2305|consensus
Probab=97.99 E-value=0.00022 Score=67.49 Aligned_cols=198 Identities=16% Similarity=0.190 Sum_probs=121.3
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-----------HcccCC---------CCeeccCCHH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL-----------ANEAKG---------TNIIGAHSLE 60 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~~~---------~~i~~~~s~~ 60 (490)
|+ .-||+|+|.|.+|+..|.-++..||+|..||..++.+.... +.|... ..|..++++.
T Consensus 1 ms-~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 1 MS-FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLN 79 (313)
T ss_pred CC-ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHH
Confidence 54 35899999999999999999999999999999988655322 222211 1245688999
Q ss_pred HHHhhCCCCcEEEEecCCCchHHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcc---ccccccCCCCCcccc
Q psy9637 61 ELVKNLKKPRRVMMLVKAGSAVDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKG---LLYVGCGVSGGEDGA 136 (490)
Q Consensus 61 e~v~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~g---i~~ld~~vsGg~~~a 136 (490)
|+++. +=.|=-|+|.+-..+.-+ .+|-..+ ...+|+..||+.+..+.-.......+. .|.+..|-.-.-.
T Consensus 80 E~vk~---Ai~iQEcvpE~L~lkk~ly~qlD~i~-d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLv-- 153 (313)
T KOG2305|consen 80 ELVKG---AIHIQECVPEDLNLKKQLYKQLDEIA-DPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLV-- 153 (313)
T ss_pred HHHhh---hhhHHhhchHhhHHHHHHHHHHHHhc-CCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchh--
Confidence 99987 667778999876666444 4444444 445666777765544443332222221 2233332211100
Q ss_pred ccCCccCC--CCCcchHHHHHHHHHhhCCceee-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy9637 137 RYGPSLMP--GGNPAAWPALKPIFQKLNPSFET-SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGW 213 (490)
Q Consensus 137 ~~G~~im~--GG~~~a~~~v~~ll~~l~~~~~~-~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~ 213 (490)
-+++ =-.++.+++.+.+.+.++.+.+. ..+++.+. +-....+.++|.-.|...=
T Consensus 154 ----ElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~-------------lnriq~Ailne~wrLvasG------ 210 (313)
T KOG2305|consen 154 ----ELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFA-------------LNRIQYAILNETWRLVASG------ 210 (313)
T ss_pred ----eeccCCCCChhHHHHHHHHHHHhCCCCcccccccccce-------------eccccHHHHHHHHHHHHcc------
Confidence 1111 13568999999999999965432 22221010 1123345667777776665
Q ss_pred CCCHHHHHHHHhccc
Q psy9637 214 KLNYGGIALMWRGGC 228 (490)
Q Consensus 214 Gld~~~v~~i~~~g~ 228 (490)
+++..++-.+++.|-
T Consensus 211 il~v~dvD~VmS~GL 225 (313)
T KOG2305|consen 211 ILNVNDVDAVMSAGL 225 (313)
T ss_pred CcchhhHHHHHhcCC
Confidence 677777777776664
No 172
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.99 E-value=2.4e-05 Score=79.10 Aligned_cols=96 Identities=14% Similarity=0.224 Sum_probs=67.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHH----HHccc---CCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSF----LANEA---KGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l----~~~g~---~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|||+|||.|.||..+|..|+.+|+ +|+++|++++..+.. .+.+. ...++..+.++++ +++ +|+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~---aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TAN---SDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCC---CCEEEEcC
Confidence 589999999999999999999887 899999976654421 11111 0234666677776 344 89999999
Q ss_pred CCCc---------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 77 KAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 77 p~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+.+. .++++++.+.++. ++.+||..+|-
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP 120 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNP 120 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 7432 2334456666664 66788888873
No 173
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.98 E-value=3.9e-05 Score=82.34 Aligned_cols=104 Identities=13% Similarity=0.238 Sum_probs=73.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++++|+|.|.+|.+++..|++.|++|+++||++++.+.+.+.... . ..+..++ ..+..+|+||.|+|.+..+..
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~--~---~~~~~~~-~~l~~~DiVInatP~g~~~~~ 406 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG--K---AFPLESL-PELHRIDIIINCLPPSVTIPK 406 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--c---eechhHh-cccCCCCEEEEcCCCCCcchh
Confidence 579999999999999999999999999999999988887654211 1 1222332 124458999999999865432
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
. +. .+|+|+....+.+ . ..+.++++|+..+
T Consensus 407 ~-------l~--~~v~D~~Y~P~~T-~-ll~~A~~~G~~~~ 436 (477)
T PRK09310 407 A-------FP--PCVVDINTLPKHS-P-YTQYARSQGSSII 436 (477)
T ss_pred H-------Hh--hhEEeccCCCCCC-H-HHHHHHHCcCEEE
Confidence 2 11 3899998865443 3 5566677776443
No 174
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.95 E-value=7e-05 Score=72.43 Aligned_cols=98 Identities=20% Similarity=0.335 Sum_probs=69.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH--cccCCCCeecc-CCHHHHHh-hCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA--NEAKGTNIIGA-HSLEELVK-NLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~--~g~~~~~i~~~-~s~~e~v~-~l~~~dvIil~vp~~~ 80 (490)
|+|.|||+|.+|..+|++|.+.||+|++.|+++++++++.. .... -+... ++...+.+ .++.+|+++.++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~--~v~gd~t~~~~L~~agi~~aD~vva~t~~d- 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTH--VVIGDATDEDVLEEAGIDDADAVVAATGND- 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceE--EEEecCCCHHHHHhcCCCcCCEEEEeeCCC-
Confidence 58999999999999999999999999999999999988554 2211 12222 33333333 256799999999885
Q ss_pred hHHHHHHhhccc-CCCCCEEEcCCCC
Q psy9637 81 AVDDFIDKLVPL-LEKGDIIIDGGNS 105 (490)
Q Consensus 81 ~v~~vl~~l~~~-l~~g~iiId~s~~ 105 (490)
.+..++..+... +....+|.-..+.
T Consensus 78 ~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 78 EVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 677777655533 5555666655553
No 175
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.94 E-value=6.6e-05 Score=75.93 Aligned_cols=89 Identities=12% Similarity=0.283 Sum_probs=61.6
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCCh-HHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTT-AKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~-~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+ +.||+|||+|+||..++..+.++ +++++ +||+++ ++.. + .. .+....+..++. .++|+|++|+|
T Consensus 1 M~-kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~-~~---~v~~~~d~~e~l---~~iDVViIctP 69 (324)
T TIGR01921 1 MS-KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---T-ET---PVYAVADDEKHL---DDVDVLILCMG 69 (324)
T ss_pred CC-CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---h-cC---CccccCCHHHhc---cCCCEEEEcCC
Confidence 64 57999999999999999999876 78877 589985 4332 1 11 122334555554 34999999999
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+....+. +.+.|..|.-|||...
T Consensus 70 s~th~~~----~~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 70 SATDIPE----QAPYFAQFANTVDSFD 92 (324)
T ss_pred CccCHHH----HHHHHHcCCCEEECCC
Confidence 8765443 3344667888888754
No 176
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.91 E-value=5e-05 Score=69.05 Aligned_cols=91 Identities=12% Similarity=0.214 Sum_probs=63.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
+++.|+|.|..|+.+|+.|...|.+|++++++|-+.-+....|.. +.+.++++.. +|++|.++.....+.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~------v~~~~~a~~~---adi~vtaTG~~~vi~- 93 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE------VMTLEEALRD---ADIFVTATGNKDVIT- 93 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E------EE-HHHHTTT----SEEEE-SSSSSSB--
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE------ecCHHHHHhh---CCEEEECCCCccccC-
Confidence 579999999999999999999999999999999877666655543 4577887776 999998877643322
Q ss_pred HHHhhcccCCCCCEEEcCCCCCh
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
.+.++.+++|.++.+.+....
T Consensus 94 --~e~~~~mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 94 --GEHFRQMKDGAILANAGHFDV 114 (162)
T ss_dssp --HHHHHHS-TTEEEEESSSSTT
T ss_pred --HHHHHHhcCCeEEeccCcCce
Confidence 233445788999999987543
No 177
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.87 E-value=0.00012 Score=76.58 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=73.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+.......|.. ..++++++.. +|+||.++.. ..
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~------v~~leeal~~---aDVVItaTG~----~~ 262 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFR------VMTMEEAAKI---GDIFITATGN----KD 262 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCE------eCCHHHHHhc---CCEEEECCCC----HH
Confidence 589999999999999999999999999999999876555544432 3456776655 8999987654 34
Q ss_pred HHH-hhcccCCCCCEEEcCCCCCh-HHHHHHHHH
Q psy9637 85 FID-KLVPLLEKGDIIIDGGNSEY-QDTDRRSKA 116 (490)
Q Consensus 85 vl~-~l~~~l~~g~iiId~s~~~~-~~~~~~~~~ 116 (490)
++. .....+++|.++++.|-... -+...+.+.
T Consensus 263 vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 263 VIRGEHFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred HHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 443 46677889999999987543 333333333
No 178
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.86 E-value=5.8e-05 Score=76.18 Aligned_cols=114 Identities=11% Similarity=0.190 Sum_probs=81.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+++|||+|.+|...+..+..- =-+|.+|||++++.++|.+.-.. +..+..++++++++.. +|+|++++++.+
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~---aDIV~taT~s~~ 194 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD---ADTITSITNSDT 194 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 5799999999999998888753 24799999999999988765321 2346678999999987 999999999875
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHH-HHHHHcccccccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRS-KALEAKGLLYVGC 127 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~-~~l~~~gi~~ld~ 127 (490)
++ ++ ...++||..|.-.|+..|. ..++. +.+......|+|.
T Consensus 195 P~---~~--~~~l~pg~hV~aiGs~~p~-~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 195 PI---FN--RKYLGDEYHVNLAGSNYPN-RREAEHSVLNDADIVVTEH 236 (301)
T ss_pred cE---ec--HHHcCCCceEEecCCCCCC-cccCCHHHHHhCCEEEECC
Confidence 43 21 1246789888888876543 33333 3333333456664
No 179
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.85 E-value=0.00015 Score=83.62 Aligned_cols=120 Identities=9% Similarity=0.099 Sum_probs=85.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-Ce-------------EEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHhhCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-FT-------------VVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVKNLKK 68 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-~~-------------V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~~l~~ 68 (490)
+++|+|||+|.||...+..|++.. ++ |++.|+++++++++.+.......+.. +.+.+++.+.++.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~ 648 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ 648 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence 468999999999999999998753 33 89999999998887764211111233 5788888776667
Q ss_pred CcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc-ccC
Q psy9637 69 PRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV-GCG 128 (490)
Q Consensus 69 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l-d~~ 128 (490)
+|+|++|+|.. -...++... ++.|.-+++.+- ...+..++.+.+++.|+.++ +++
T Consensus 649 ~DaVIsalP~~-~H~~VAkaA---ieaGkHvv~eky-~~~e~~~L~e~Ak~AGV~~m~e~G 704 (1042)
T PLN02819 649 VDVVISLLPAS-CHAVVAKAC---IELKKHLVTASY-VSEEMSALDSKAKEAGITILCEMG 704 (1042)
T ss_pred CCEEEECCCch-hhHHHHHHH---HHcCCCEEECcC-CHHHHHHHHHHHHHcCCEEEECCc
Confidence 99999999995 334444433 456778888873 34566666677788887653 444
No 180
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.84 E-value=8.3e-05 Score=75.24 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=72.1
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-HG-FTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.+|+|||+|.+|...+..+.. .+ .+|.+|||++++.+.|.+.-.. +..+. +.+.++++.+ +|+|+.++|+..+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~~~~~~av~~---aDiVitaT~s~~P 201 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-PLDGEAIPEA---VDLVVTATTSRTP 201 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-ECCHHHHhhc---CCEEEEccCCCCc
Confidence 579999999999999999975 45 4799999999999988865321 11222 5788888876 9999999999764
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
+ +.. .+++|..|+-.|+..|
T Consensus 202 l---~~~---~~~~g~hi~~iGs~~p 221 (304)
T PRK07340 202 V---YPE---AARAGRLVVAVGAFTP 221 (304)
T ss_pred e---eCc---cCCCCCEEEecCCCCC
Confidence 3 332 3689999999887665
No 181
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.84 E-value=0.00016 Score=68.53 Aligned_cols=110 Identities=20% Similarity=0.322 Sum_probs=74.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
++||+||+|.+|..+...+.+. .+ .|.+|||+.+++..+.+.-.. ..++++.|+++. +|+++-|-.. ++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~----~~~s~ide~~~~---~DlvVEaAS~-~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGR----RCVSDIDELIAE---VDLVVEAASP-EA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCC----CccccHHHHhhc---cceeeeeCCH-HH
Confidence 4799999999999998776643 24 467899999999987764332 245889998865 9999999766 57
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
+++...+++.. ..+-+|+..|.-..+...++...+.+.+-+
T Consensus 73 v~e~~~~~L~~-g~d~iV~SVGALad~~l~erl~~lak~~~~ 113 (255)
T COG1712 73 VREYVPKILKA-GIDVIVMSVGALADEGLRERLRELAKCGGA 113 (255)
T ss_pred HHHHhHHHHhc-CCCEEEEechhccChHHHHHHHHHHhcCCc
Confidence 77776555432 123455555554444455555555555443
No 182
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.82 E-value=9e-05 Score=78.30 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=65.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV- 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v- 82 (490)
.+|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... ......++.+.+.. +|+||.|++.+..+
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~--~~i~~~~l~~~l~~---aDvVi~aT~s~~~ii 255 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG--EAVKFEDLEEYLAE---ADIVISSTGAPHPIV 255 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC--eEeeHHHHHHHHhh---CCEEEECCCCCCceE
Confidence 58999999999999999999999 7899999999988877654221 11123344555554 99999999876543
Q ss_pred -HHHHHhhcccCCCCCEEEcCCC
Q psy9637 83 -DDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 83 -~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.+.+......-....+++|.+.
T Consensus 256 ~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 256 SKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred cHHHHHHHHhcCCCCeEEEEeCC
Confidence 1223322211112358889874
No 183
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.81 E-value=0.0001 Score=77.39 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=70.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
.+|+|+|+|.+|..+|..|...|.+|+++|+++.+.......|.. ..+++++++. +|+||.++.. ..
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~------v~~l~eal~~---aDVVI~aTG~----~~ 279 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR------VMTMEEAAEL---GDIFVTATGN----KD 279 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE------ecCHHHHHhC---CCEEEECCCC----HH
Confidence 579999999999999999999999999999999876555444432 3467777665 9999988744 33
Q ss_pred HHH-hhcccCCCCCEEEcCCCCCh
Q psy9637 85 FID-KLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 85 vl~-~l~~~l~~g~iiId~s~~~~ 107 (490)
+++ ..+..+++|.++++.|....
T Consensus 280 vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 280 VITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred HHHHHHHhcCCCCCEEEEcCCCCC
Confidence 453 56677899999999987543
No 184
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.81 E-value=8.3e-05 Score=75.95 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=72.2
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-HG-FTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|+|||+|.+|...+..++. .+ .+|.+|||++++.+++.+.-.. +..+..++++++++.. +|+|++|+|...
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDiVi~aT~s~~ 204 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE---ADIIVTVTNAKT 204 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEccCCCC
Confidence 579999999999998877753 34 4799999999999988763211 1234457888888876 999999999874
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChH
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQ 108 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~ 108 (490)
+ ++. ..+++|..|+-.|+..|.
T Consensus 205 p---~i~---~~l~~G~hV~~iGs~~p~ 226 (325)
T PRK08618 205 P---VFS---EKLKKGVHINAVGSFMPD 226 (325)
T ss_pred c---chH---HhcCCCcEEEecCCCCcc
Confidence 4 333 456899999998886653
No 185
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.80 E-value=0.0002 Score=72.65 Aligned_cols=94 Identities=15% Similarity=0.201 Sum_probs=61.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CeEEEEeCChHHHHH----HHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG--FTVVAYNRTTAKVDS----FLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~----l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|||+|||+|.+|..+|..|+.+| .+|.++|+++++.+. +...... ...+ .+.+.++ ++.+|+||+++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i-~~~d~~~----l~~aDiViita 75 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRI-YAGDYAD----CKGADVVVITA 75 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEE-eeCCHHH----hCCCCEEEEcc
Confidence 48999999999999999999999 689999999877653 2211100 0111 2344443 33499999999
Q ss_pred CCCch---------------HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 77 KAGSA---------------VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 77 p~~~~---------------v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+.+.. ++++.+.+..+- +..+++-.+|
T Consensus 76 ~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~tN 117 (308)
T cd05292 76 GANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTN 117 (308)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 86421 334445555554 4445555555
No 186
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.80 E-value=7.2e-05 Score=65.45 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=69.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHH-CCCeEE-EEeCChH-HH----HHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGL-AVMGQNLILNMND-HGFTVV-AYNRTTA-KV----DSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~-~G~~V~-v~dr~~~-~~----~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|||+|+|+ |+||+.++..+.+ .++++. ++|++++ .. ..+.... ...+...++++++.+. +|+||-..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~--~~~~~v~~~l~~~~~~---~DVvIDfT 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG--PLGVPVTDDLEELLEE---ADVVIDFT 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS--T-SSBEBS-HHHHTTH----SEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC--CcccccchhHHHhccc---CCEEEEcC
Confidence 48999999 9999999999998 788865 5788862 11 1111111 2234467889998887 89998776
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK 120 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~ 120 (490)
.+..+.+.++.++. .|.-+|-++|.......+..+.+.++
T Consensus 76 -~p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 76 -NPDAVYDNLEYALK---HGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp --HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred -ChHHhHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 33456665555544 47888888888765555555665554
No 187
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.80 E-value=6.9e-05 Score=77.85 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=68.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhCCCCcEEEEecCCC-chH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNLKKPRRVMMLVKAG-SAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l~~~dvIil~vp~~-~~v 82 (490)
.+|.|||.|.+|...+..+...|.+|+++||++++.+.+...... .+. ...+.+++.+.++.+|+||.+++.+ ...
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~--~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~ 245 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG--RIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKA 245 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc--eeEeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence 469999999999999999999999999999999988877654321 111 1234455555555699999997431 111
Q ss_pred HHHH-HhhcccCCCCCEEEcCCC
Q psy9637 83 DDFI-DKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 83 ~~vl-~~l~~~l~~g~iiId~s~ 104 (490)
..++ .+.+..++++.+|||.+.
T Consensus 246 p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 246 PKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CcCcCHHHHhcCCCCCEEEEEec
Confidence 1112 444556788999999764
No 188
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.79 E-value=0.00012 Score=65.45 Aligned_cols=120 Identities=19% Similarity=0.289 Sum_probs=77.3
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCe--eccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNI--IGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
+|.|||+|.+|..++.+|++.|+ +++++|.+.-....+...... ...+ .-++...+.+.++. |++-+.+.+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 58999999999999999999998 699999874333333221110 0000 11233344444332 5666666655322
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
.... ...+.+-++||++... +.....+.+.+.+.++.|+++++.|
T Consensus 80 ~~~~----~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 80 EDNL----DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhhH----HHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 2111 3345678999999886 4555666688888999999999877
No 189
>KOG2711|consensus
Probab=97.78 E-value=0.00018 Score=71.99 Aligned_cols=98 Identities=13% Similarity=0.212 Sum_probs=73.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CC-----eEEEEeCCh------HHHHHHHHcccC----------CCCeeccCCHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GF-----TVVAYNRTT------AKVDSFLANEAK----------GTNIIGAHSLEE 61 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~-----~V~v~dr~~------~~~~~l~~~g~~----------~~~i~~~~s~~e 61 (490)
.||+|||.|++|+.+|+.+.++ ++ +|..|-+.. +++-+....... +.++.+.+++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 5899999999999999998864 22 466664332 222222221111 456778889988
Q ss_pred HHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 62 LVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 62 ~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
++.+ +|+++..||. +.+..++++|..+++++.+.|.+..+.
T Consensus 102 a~~d---ADilvf~vPh-Qf~~~ic~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 102 AAKD---ADILVFVVPH-QFIPRICEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred Hhcc---CCEEEEeCCh-hhHHHHHHHHhcccCCCCeEEEeecce
Confidence 8877 9999999999 689999999999999999999887664
No 190
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.78 E-value=7.5e-05 Score=79.03 Aligned_cols=95 Identities=15% Similarity=0.241 Sum_probs=65.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV- 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v- 82 (490)
++|+|||+|.||..++..|...|+ +|+++||++++.+.+.+.... .+....++.+.+ ..+|+||.|++.+..+
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~--~~~~~~~~~~~l---~~aDvVI~aT~s~~~~i 257 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG--EAIPLDELPEAL---AEADIVISSTGAPHPII 257 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC--cEeeHHHHHHHh---ccCCEEEECCCCCCcEE
Confidence 589999999999999999999997 799999999998877765321 122223334444 4499999999886543
Q ss_pred -HHHHHhhcc-cCCCCCEEEcCCC
Q psy9637 83 -DDFIDKLVP-LLEKGDIIIDGGN 104 (490)
Q Consensus 83 -~~vl~~l~~-~l~~g~iiId~s~ 104 (490)
.+.+..... .-..+.++||.+.
T Consensus 258 ~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 258 GKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred cHHHHHHHHhhccCCCeEEEEeCC
Confidence 223332221 1124578999975
No 191
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.77 E-value=9.9e-05 Score=74.97 Aligned_cols=114 Identities=9% Similarity=0.199 Sum_probs=80.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.+++|||+|.++...++.+..- --+|.+|||++++.++|.+.-.. +.++..++++++++.. +|+|++++++..+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~---ADIV~taT~s~~P 205 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHA---ANLIVTTTPSREP 205 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcC---CCEEEEecCCCCc
Confidence 5799999999999988887753 35899999999999988754321 2345668899999887 9999999988754
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHH-HHHHHcccccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRS-KALEAKGLLYVGC 127 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~-~~l~~~gi~~ld~ 127 (490)
+ ++ ...+++|..|+-.|+..| ..+++- +.+......|+|-
T Consensus 206 ~---~~--~~~l~~G~hi~~iGs~~p-~~~Eld~~~l~~a~~vvvD~ 246 (315)
T PRK06823 206 L---LQ--AEDIQPGTHITAVGADSP-GKQELDAELVARADKILVDS 246 (315)
T ss_pred e---eC--HHHcCCCcEEEecCCCCc-ccccCCHHHHhhCCEEEECC
Confidence 3 31 125679999998887654 233333 3333333345554
No 192
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.77 E-value=8.6e-05 Score=75.87 Aligned_cols=94 Identities=11% Similarity=0.211 Sum_probs=70.5
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-HG-FTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+++|||+|.+|...+..|.. .+ -+|.+|||++++.+.|.+.-.. +..+..++++++++.. +|+|+.++|...
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~---aDiVvtaT~s~~ 206 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSG---ADIIVTTTPSET 206 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 579999999999999999973 56 4699999999999988764311 1234457888888876 999999999864
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+ ++. ...+++|..|...+.-.
T Consensus 207 p---~i~--~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 207 P---ILH--AEWLEPGQHVTAMGSDA 227 (326)
T ss_pred c---Eec--HHHcCCCcEEEeeCCCC
Confidence 3 221 12467898888777543
No 193
>PRK11579 putative oxidoreductase; Provisional
Probab=97.76 E-value=0.00026 Score=72.86 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcccHHHHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 1 MAAKGDIGLIGLAVMGQN-LILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+.++||||||+|.||.. .+..+.+. +++++ ++|+++++... ... .+..+++++++++. ++.|+|++|+|
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~--~~~----~~~~~~~~~ell~~-~~vD~V~I~tp 73 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA--DWP----TVTVVSEPQHLFND-PNIDLIVIPTP 73 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh--hCC----CCceeCCHHHHhcC-CCCCEEEEcCC
Confidence 766789999999999985 55666553 67765 68999876542 111 12357899999874 34799999999
Q ss_pred CCchHHHHHHhhcccCCCCCEEE-c--CCCCChHHHHHHHHHHHHccccc
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIII-D--GGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiI-d--~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
+....+-++.. ++.|+-|+ + ... ...+..++.+.++++|+.+
T Consensus 74 ~~~H~~~~~~a----l~aGkhVl~EKPla~-t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 74 NDTHFPLAKAA----LEAGKHVVVDKPFTV-TLSQARELDALAKSAGRVL 118 (346)
T ss_pred cHHHHHHHHHH----HHCCCeEEEeCCCCC-CHHHHHHHHHHHHHhCCEE
Confidence 97554444433 34565444 4 222 3355666667667666543
No 194
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.76 E-value=0.00015 Score=72.50 Aligned_cols=117 Identities=15% Similarity=0.057 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||.|-+|++++..|++.|. +|+++||++++.+.+.+.......+....+..++...+..+|+||-|+|.+...+
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~ 205 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPAD 205 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCC
Confidence 479999999999999999999997 6999999999999887643211112222233333333445899999999886543
Q ss_pred HH-HHhhc-----ccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 84 DF-IDKLV-----PLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 84 ~v-l~~l~-----~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.. +.... ..+.++.+++|.--. |..| ...+..+++|..
T Consensus 206 ~~~l~~~~~~~~~~~~~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~ 249 (282)
T TIGR01809 206 YVDLFATVPFLLLKRKSSEGIFLDAAYD-PWPT-PLVAIVSAAGWR 249 (282)
T ss_pred HHHhhhhhhhhccccCCCCcEEEEEeeC-CCCC-HHHHHHHHCCCE
Confidence 21 11110 123467889998643 2332 233444555643
No 195
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.73 E-value=0.00024 Score=69.58 Aligned_cols=88 Identities=13% Similarity=0.162 Sum_probs=63.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC---CeE-EEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG---FTV-VAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G---~~V-~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
+||||||+|.||..++..|.+.+ +++ .+|+|++++.+.+... ...++++++++.. ++|+|+-|-.. +
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~------~~~~~~l~~ll~~--~~DlVVE~A~~-~ 73 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR------VALLDGLPGLLAW--RPDLVVEAAGQ-Q 73 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc------CcccCCHHHHhhc--CCCEEEECCCH-H
Confidence 58999999999999999987542 443 4689998888887643 2368899997532 39999999876 4
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
++++....++ ..|.-++-+|.
T Consensus 74 av~e~~~~iL---~~g~dlvv~Sv 94 (267)
T PRK13301 74 AIAEHAEGCL---TAGLDMIICSA 94 (267)
T ss_pred HHHHHHHHHH---hcCCCEEEECh
Confidence 7777666554 44543444443
No 196
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.73 E-value=0.00037 Score=71.16 Aligned_cols=112 Identities=15% Similarity=0.210 Sum_probs=78.1
Q ss_pred CCCcEEEEcccHH-HHHHHHHHHHCCC---eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 3 AKGDIGLIGLAVM-GQNLILNMNDHGF---TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 3 ~~~~IgiIGlG~M-G~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
+++||||||+|.+ +...+..+.+.+. -|.++|+++++++.+.+..... ..++|++++++. ++.|+|++++|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~---~~~~~~~~ll~~-~~iD~V~Iatp~ 77 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIA---KAYTDLEELLAD-PDIDAVYIATPN 77 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCC---cccCCHHHHhcC-CCCCEEEEcCCC
Confidence 3579999999944 4668888888763 4667899999999888764421 368899999986 336999999999
Q ss_pred CchHHHHHHhhcccCCCCCE-EEc--CCCCChHHHHHHHHHHHHcccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGDI-IID--GGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~i-iId--~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
....+-++.. |..|+- +++ .+. ...+..++.+..+++|..
T Consensus 78 ~~H~e~~~~A----L~aGkhVl~EKPla~-t~~ea~~l~~~a~~~~~~ 120 (342)
T COG0673 78 ALHAELALAA----LEAGKHVLCEKPLAL-TLEEAEELVELARKAGVK 120 (342)
T ss_pred hhhHHHHHHH----HhcCCEEEEcCCCCC-CHHHHHHHHHHHHHcCCc
Confidence 7665555443 445554 444 233 346677777776666653
No 197
>PLN02494 adenosylhomocysteinase
Probab=97.73 E-value=0.00018 Score=75.93 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=68.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|+|+|.+|..+|..+...|.+|+++++++.+.......+.. ..++++++.. +|+|+.+..+. .
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~------vv~leEal~~---ADVVI~tTGt~----~ 321 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ------VLTLEDVVSE---ADIFVTTTGNK----D 321 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe------eccHHHHHhh---CCEEEECCCCc----c
Confidence 579999999999999999999999999999998775554444432 2367777766 89999865443 3
Q ss_pred HH-HhhcccCCCCCEEEcCCCC
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~ 105 (490)
++ .+.+..+++|.++++.|..
T Consensus 322 vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 322 IIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred chHHHHHhcCCCCCEEEEcCCC
Confidence 32 4556678899999999874
No 198
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.72 E-value=7.9e-05 Score=74.42 Aligned_cols=116 Identities=20% Similarity=0.142 Sum_probs=75.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.++.|+|.|.+|..++..|+..| .+|+++||+.++.+.+.+.......+....+..+ .+..+|+||.++|.+..-.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~---~~~~~DivInaTp~g~~~~ 200 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQE---ELADFDLIINATSAGMSGE 200 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchh---ccccCCEEEECCcCCCCCC
Confidence 57999999999999999999999 7999999999999888764321100111012222 2344899999999874211
Q ss_pred HHHHhh-cccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 84 DFIDKL-VPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 84 ~vl~~l-~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
.-...+ ...++++.+|+|..- .|..| ...+..+++|+..+
T Consensus 201 ~~~~~~~~~~l~~~~~v~DivY-~P~~T-~ll~~A~~~G~~~~ 241 (278)
T PRK00258 201 LPLPPLPLSLLRPGTIVYDMIY-GPLPT-PFLAWAKAQGARTI 241 (278)
T ss_pred CCCCCCCHHHcCCCCEEEEeec-CCCCC-HHHHHHHHCcCeec
Confidence 000001 124677899999965 34333 34455666776443
No 199
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.72 E-value=0.00022 Score=70.76 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=66.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCC--hHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRT--TAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~--~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|+||||||+|.||..+++.+.+. +.++. ++++. .++....... .+..+++++++ . +++|+|+.|.|..
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~-----~~~~~~d~~~l-~--~~~DvVve~t~~~ 72 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE-----AVRVVSSVDAL-P--QRPDLVVECAGHA 72 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc-----CCeeeCCHHHh-c--cCCCEEEECCCHH
Confidence 36999999999999999999876 45554 34443 2332222211 23457888887 3 3589999999985
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCC---ChHHHHHHHHHHHHcccc
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNS---EYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~---~~~~~~~~~~~l~~~gi~ 123 (490)
.+.+....+ |..|.-++..+.. .+....++.+.+++.|..
T Consensus 73 -~~~e~~~~a---L~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 73 -ALKEHVVPI---LKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred -HHHHHHHHH---HHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 555554444 4566666655543 222234444555566654
No 200
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.72 E-value=0.00017 Score=73.90 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=69.4
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-HG-FTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++|+|||+|.+|...+..|.. .+ .+|.+|||++++.+.+.+.... +..+..++++++++.+ +|+|+.++|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~---aDiVi~aT~s~~ 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAG---ADIIVTTTPSEE 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHcc---CCEEEEeeCCCC
Confidence 589999999999998888875 44 5899999999999998764321 1234457888888876 899999998864
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+ ++.. ..+++|..|...+...
T Consensus 210 p---~i~~--~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 210 P---ILKA--EWLHPGLHVTAMGSDA 230 (330)
T ss_pred c---EecH--HHcCCCceEEeeCCCC
Confidence 3 2221 1256788777766543
No 201
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.72 E-value=9.9e-05 Score=78.10 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=54.3
Q ss_pred CcEEEEcccHHHHHHHH--HH----HHCCCeEEEEeCChHHHHHHHHcc-------cCCCCeeccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLIL--NM----NDHGFTVVAYNRTTAKVDSFLANE-------AKGTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~--~L----~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~i~~~~s~~e~v~~l~~~dv 71 (490)
+||+|||.|.||..++. .+ ..+|++|++||+++++.+...... ....++..++++.++++. +|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~---AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG---ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC---CCE
Confidence 47999999999998665 34 456899999999998877654321 112356678888888776 999
Q ss_pred EEEecCC
Q psy9637 72 VMMLVKA 78 (490)
Q Consensus 72 Iil~vp~ 78 (490)
||++++.
T Consensus 78 Vi~ai~~ 84 (423)
T cd05297 78 VINTIQV 84 (423)
T ss_pred EEEeeEe
Confidence 9999985
No 202
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.69 E-value=0.00026 Score=72.12 Aligned_cols=99 Identities=15% Similarity=0.240 Sum_probs=64.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHH--H---HHc--ccCCCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDS--F---LAN--EAKGTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~--l---~~~--g~~~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
.++||+|||.|.||..+|..++..|+ +|+++|+++++.+. + ... .....++..+.+.+++ + .+|+||+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-~---~aDiVI~ 80 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-A---GSDVVIV 80 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-C---CCCEEEE
Confidence 45789999999999999999999996 99999999885431 1 110 0011245555666543 3 4999999
Q ss_pred ecCCC----c----------------hHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 75 LVKAG----S----------------AVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 75 ~vp~~----~----------------~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+.-.+ . .+.++++.+.+.. |..++|..+|..
T Consensus 81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 76221 1 1233445555554 555888888743
No 203
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.69 E-value=8.7e-05 Score=74.35 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=75.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC---CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK---GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~---~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++|.|||+|.+|++++..|++.|. +|+++||++++.+.+.+.-.. ...+...+++.+.+ ..+|+||.++|.+-
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~---~~aDiVInaTp~Gm 204 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAAL---AAADGLVHATPTGM 204 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhh---CCCCEEEECCcCCC
Confidence 479999999999999999999997 799999999999988764211 01122223333333 34899999998863
Q ss_pred hHHHHHHhh-cccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 81 AVDDFIDKL-VPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 81 ~v~~vl~~l-~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
.-..- ..+ ...+.++.+++|..-.. ..| ...+..+++|...+
T Consensus 205 ~~~~~-~~~~~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G~~~~ 247 (284)
T PRK12549 205 AKHPG-LPLPAELLRPGLWVADIVYFP-LET-ELLRAARALGCRTL 247 (284)
T ss_pred CCCCC-CCCCHHHcCCCcEEEEeeeCC-CCC-HHHHHHHHCCCeEe
Confidence 21100 001 12367788999997543 333 34455566775443
No 204
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.67 E-value=0.00022 Score=70.34 Aligned_cols=94 Identities=16% Similarity=0.237 Sum_probs=63.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++||+|||+ |+||..++..+.+. +++++ ++|+++++.... . ...+..+++++++++. +|+|+.+.|+.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~----~~~i~~~~dl~~ll~~---~DvVid~t~p~- 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-G----ALGVAITDDLEAVLAD---ADVLIDFTTPE- 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-C----CCCccccCCHHHhccC---CCEEEECCCHH-
Confidence 369999998 99999999888864 67766 589887765443 1 1123356788887764 89999787764
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHH
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQD 109 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~ 109 (490)
...+++... ++.|.-++-.+|.....
T Consensus 72 ~~~~~~~~a---l~~G~~vvigttG~s~~ 97 (257)
T PRK00048 72 ATLENLEFA---LEHGKPLVIGTTGFTEE 97 (257)
T ss_pred HHHHHHHHH---HHcCCCEEEECCCCCHH
Confidence 445554433 44666666556554433
No 205
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.65 E-value=0.00025 Score=73.88 Aligned_cols=94 Identities=20% Similarity=0.324 Sum_probs=68.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV- 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v- 82 (490)
.++.|||+|.||.-.|++|.++| ..|++.||+.++++.+.++-.. -+.++.++...|..+|+||+++.++.++
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~-----~~~~l~el~~~l~~~DvVissTsa~~~ii 253 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA-----EAVALEELLEALAEADVVISSTSAPHPII 253 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC-----eeecHHHHHHhhhhCCEEEEecCCCcccc
Confidence 57999999999999999999999 6899999999999998876431 2455666666566699999998665443
Q ss_pred -HHHHHhhcccCCCCCEEEcCCC
Q psy9637 83 -DDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 83 -~~vl~~l~~~l~~g~iiId~s~ 104 (490)
..-+...... ++.-++||.+.
T Consensus 254 ~~~~ve~a~~~-r~~~livDiav 275 (414)
T COG0373 254 TREMVERALKI-RKRLLIVDIAV 275 (414)
T ss_pred CHHHHHHHHhc-ccCeEEEEecC
Confidence 2222333221 12258899886
No 206
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.63 E-value=0.0003 Score=66.21 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=68.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC--CCCeec--cCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK--GTNIIG--AHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~--~~~i~~--~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+++.|+|. |.+|..++..|++.|++|++++|++++.+.+.+.-.. +..+.. ..+.+++.+.+..+|+||.+.|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 58999995 9999999999999999999999999988877653210 111211 244454444445599999999987
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
..+ .........++.+++|..-..
T Consensus 109 ~~~---~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 109 VEL---LEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred cee---chhhhcccCceeEEEEccCCC
Confidence 541 111222344578999986543
No 207
>KOG0068|consensus
Probab=97.63 E-value=0.00024 Score=70.88 Aligned_cols=105 Identities=21% Similarity=0.336 Sum_probs=84.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
+++||+|+|++|+..|.++..-|-.|+.||.-... +...+.|.+ ..+++|+... +|+|-+-+|-.++++.
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~-~~~~a~gvq------~vsl~Eil~~---ADFitlH~PLtP~T~~ 216 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPM-ALAEAFGVQ------LVSLEEILPK---ADFITLHVPLTPSTEK 216 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCch-HHHHhccce------eeeHHHHHhh---cCEEEEccCCCcchhh
Confidence 57999999999999999999999999999864322 223333432 5688888876 9999999999999998
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA 119 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~ 119 (490)
++ ++.+..+++|-.||+++.+---|...+.+.+..
T Consensus 217 lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 217 LLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred ccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 88 566677899999999998877777777766653
No 208
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.62 E-value=0.00026 Score=74.26 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
.+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....|.. ..+.++.+.. +|+||.++... .
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~------~~~~~e~v~~---aDVVI~atG~~----~ 269 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE------VMTMEEAVKE---GDIFVTTTGNK----D 269 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE------EccHHHHHcC---CCEEEECCCCH----H
Confidence 579999999999999999999999999999999988877766542 2345666654 89999887543 3
Q ss_pred HHH-hhcccCCCCCEEEcCCCC
Q psy9637 85 FID-KLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 85 vl~-~l~~~l~~g~iiId~s~~ 105 (490)
++. .....+++|.++++.|..
T Consensus 270 ~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 270 IITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred HHHHHHHhcCCCCcEEEEeCCC
Confidence 343 346778899999999853
No 209
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.62 E-value=0.0005 Score=71.79 Aligned_cols=122 Identities=17% Similarity=0.228 Sum_probs=76.3
Q ss_pred EEEEcccHHHHHHHHHHHHCC-C-eEEEEeCChHHHHHHHHcccCCCCee----ccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 7 IGLIGLAVMGQNLILNMNDHG-F-TVVAYNRTTAKVDSFLANEAKGTNII----GAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 7 IgiIGlG~MG~~lA~~L~~~G-~-~V~v~dr~~~~~~~l~~~g~~~~~i~----~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
|.|+|.|.+|..++..|++.+ + +|++.||+.++++++.+.-. ..++. -..+.+++.+-++.+|+||.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLL-GDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--T-TTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcc-ccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-
Confidence 789999999999999999987 4 89999999999998876311 11111 1345555555455699999999874
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc-cccCCCCCcc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY-VGCGVSGGED 134 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~-ld~~vsGg~~ 134 (490)
....+++..+ +.|.-+||.+. ......+..+..+++|+.+ .+++...|..
T Consensus 79 ~~~~v~~~~i---~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 79 FGEPVARACI---EAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp GHHHHHHHHH---HHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred hhHHHHHHHH---HhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 4555555443 46788999332 1334444446666777764 4566655554
No 210
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.61 E-value=0.00024 Score=71.73 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=61.8
Q ss_pred EEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHH----HHccc---CCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 7 IGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSF----LANEA---KGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 7 IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l----~~~g~---~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|+|||+|.||..+|..|+.+|+ +|+++|+++++.+.. ..... ...++....+.++ ++ .+|+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~---dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-IA---GSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-hC---CCCEEEEecCC
Confidence 6899999999999999998887 999999998764321 11110 1124444455544 33 49999998843
Q ss_pred Cc---------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 79 GS---------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 79 ~~---------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+. .+++++..+.+.. ++.++|..+|.
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP 117 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNP 117 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 21 1334556666655 56677777764
No 211
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.59 E-value=0.0002 Score=72.76 Aligned_cols=97 Identities=20% Similarity=0.286 Sum_probs=64.0
Q ss_pred CcEEEEcccHHHHHHHHHHHH-C-CCeEEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-H-GFTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~-G~~V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.+++|||+|..+...+..+.. . --+|.+|||++++.++|.+.-.. +..+..++|+++++.. +|+|++|+|+...
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~---aDii~taT~s~~~ 205 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRG---ADIIVTATPSTTP 205 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTT---SSEEEE----SSE
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhccc---CCEEEEccCCCCC
Confidence 579999999999998887764 2 24799999999999998875433 4467789999999988 9999999999751
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
. .+++ ...+++|..|+-.|...|
T Consensus 206 ~-P~~~--~~~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 206 A-PVFD--AEWLKPGTHINAIGSYTP 228 (313)
T ss_dssp E-ESB---GGGS-TT-EEEE-S-SST
T ss_pred C-cccc--HHHcCCCcEEEEecCCCC
Confidence 0 1222 135789999999887654
No 212
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00029 Score=71.65 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=83.2
Q ss_pred CcEEEEcccHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMND--HGFTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
..++|||+|.++......+.. ..-+|.+|+|+++..+++...-.. +..+..++|.+++++. +|+|+.++|+.+
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~---aDiIvt~T~s~~ 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG---ADIVVTATPSTE 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc---CCEEEEecCCCC
Confidence 569999999999998888775 345899999999999988754221 2235678999999988 999999999975
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHH-HHHHHccccccccC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRS-KALEAKGLLYVGCG 128 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~-~~l~~~gi~~ld~~ 128 (490)
+ ++. ...|++|..|.-.|.-.|. ..+.. +.+...+..|+|.+
T Consensus 208 P---il~--~~~l~~G~hI~aiGad~p~-k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 208 P---VLK--AEWLKPGTHINAIGADAPG-KRELDPEVLARADRVVVDSL 250 (330)
T ss_pred C---eec--HhhcCCCcEEEecCCCCcc-cccCCHHHHHhcCeEEEcCH
Confidence 3 221 1357799998888875443 33343 44444446677765
No 213
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.54 E-value=0.00042 Score=70.19 Aligned_cols=95 Identities=15% Similarity=0.204 Sum_probs=64.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHcccC-----CCCe-eccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG--FTVVAYNRTTAKVDSFLANEAK-----GTNI-IGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~-----~~~i-~~~~s~~e~v~~l~~~dvIil~v 76 (490)
+||+|||+|.+|..+|..|+..| ++|+++|+++++++.+...-.. .... ....+.++ +. .+|+||++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~---~aDIVIita 76 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CK---DADIVVITA 76 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hC---CCCEEEEcc
Confidence 37999999999999999999999 6899999999987765542100 1111 12344444 33 499999998
Q ss_pred CCCc---------------hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 77 KAGS---------------AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 77 p~~~---------------~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
..+. .++++.+.+.++- +..+||..||
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsN 118 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASN 118 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecC
Confidence 6532 1334445555543 5667888876
No 214
>PRK06046 alanine dehydrogenase; Validated
Probab=97.53 E-value=0.00028 Score=72.08 Aligned_cols=94 Identities=18% Similarity=0.305 Sum_probs=70.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHC-C-CeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH-G-FTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|||||+|.+|...+..|... + ..|.+|||++++.+++.+.... +.++..+++++++++ +|+|++|+|+..
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~----aDiVv~aTps~~ 205 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD----CDILVTTTPSRK 205 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh----CCEEEEecCCCC
Confidence 5799999999999999998743 3 3688999999999988764321 122445778888874 799999999865
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
++ ++ ...+++|..|...|+..|
T Consensus 206 P~---~~--~~~l~~g~hV~~iGs~~p 227 (326)
T PRK06046 206 PV---VK--AEWIKEGTHINAIGADAP 227 (326)
T ss_pred cE---ec--HHHcCCCCEEEecCCCCC
Confidence 43 21 124678999988887654
No 215
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.50 E-value=0.00096 Score=68.50 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=76.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDH--GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+..||||||+ .||...+..+.+. +++++ ++|+++++.+++.++.. +..++++++++++ .|++++++|+.
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~g----i~~y~~~eell~d---~Di~~V~ipt~ 73 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLG----VPLYCEVEELPDD---IDIACVVVRSA 73 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhC----CCccCCHHHHhcC---CCEEEEEeCCC
Confidence 3468999999 6899999999875 46655 68999999999887543 2357999999876 78888887642
Q ss_pred ---chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 80 ---SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 80 ---~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
..-.++... .|+.|.-|+--=-....+.+++.+.++++|+.+.
T Consensus 74 ~P~~~H~e~a~~---aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 74 IVGGQGSALARA---LLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCccHHHHHHH---HHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 122233322 3445654443222235677777777777887654
No 216
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.46 E-value=0.00042 Score=63.86 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=56.2
Q ss_pred CcEEEEcccHH-HHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVM-GQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~M-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.+|.|||.|.| |..++.+|.++|.+|++.+|+.+ ++.+.+.+ +|+||.+++.+..+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~-------------------~l~~~l~~---aDiVIsat~~~~ii- 101 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK-------------------NLKEHTKQ---ADIVIVAVGKPGLV- 101 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch-------------------hHHHHHhh---CCEEEEcCCCCcee-
Confidence 68999999997 88899999999999999998732 33344555 89999999986321
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
-.+ .++++.+|||.+..
T Consensus 102 --~~~---~~~~~~viIDla~p 118 (168)
T cd01080 102 --KGD---MVKPGAVVIDVGIN 118 (168)
T ss_pred --cHH---HccCCeEEEEccCC
Confidence 122 34668999999864
No 217
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.44 E-value=0.00051 Score=61.48 Aligned_cols=95 Identities=18% Similarity=0.238 Sum_probs=60.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccC-----CCCeec-cCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAK-----GTNIIG-AHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~-----~~~i~~-~~s~~e~v~~l~~~dvIil~ 75 (490)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++.....-.. ..+... ..+.+++ + ++|+|+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-~---~aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEAL-K---DADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGG-T---TESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccc-c---cccEEEEe
Confidence 58999999 9999999999998875 799999998876654321100 111112 2333333 3 38999988
Q ss_pred cCCC----c-----------hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 76 VKAG----S-----------AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 76 vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.-.. . .++++...+.++- +..+++-.+|
T Consensus 77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtN 119 (141)
T PF00056_consen 77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTN 119 (141)
T ss_dssp TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SS
T ss_pred ccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCC
Confidence 7332 1 1233334555554 6667777776
No 218
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.44 E-value=0.0012 Score=65.44 Aligned_cols=112 Identities=17% Similarity=0.225 Sum_probs=65.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHH-CCCeEE-EEeCC-hHHHH-HHHHc-ccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIG-LAVMGQNLILNMND-HGFTVV-AYNRT-TAKVD-SFLAN-EAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~-~G~~V~-v~dr~-~~~~~-~l~~~-g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
+||+|+| +|+||..+++.+.+ .+++++ ++||+ +++.. .+.+. +.....+..+++++++.. .+|+||.+.|+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~---~~DvVIdfT~p 78 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVET---DPDVLIDFTTP 78 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcC---CCCEEEECCCh
Confidence 6999999 69999999999986 577766 57854 33211 11111 110112445688888732 38999999977
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChHHHH-HHHHHHHHcccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD-RRSKALEAKGLL 123 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~-~~~~~l~~~gi~ 123 (490)
. .+.+.+... +..|.-+|.+++....... ++.+..++.|+.
T Consensus 79 ~-~~~~~~~~a---l~~g~~vVigttg~~~e~~~~l~~aA~~~g~~ 120 (266)
T TIGR00036 79 E-GVLNHLKFA---LEHGVRLVVGTTGFSEEDKQELADLAEKAGIA 120 (266)
T ss_pred H-HHHHHHHHH---HHCCCCEEEECCCCCHHHHHHHHHHHhcCCcc
Confidence 4 555554443 4466666665555433333 333433444443
No 219
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.43 E-value=0.00086 Score=68.35 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=65.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHH---cccC----CCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLA---NEAK----GTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~---~g~~----~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
.+||+|||+|.||..++..++..| .+|.++|+++++.+...- .... ..++....+++++ +. +|+|+++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l-~~---ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDI-KD---SDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHh-CC---CCEEEEC
Confidence 469999999999999999999999 689999999865442111 1110 1234444666643 44 8999999
Q ss_pred c--CCC-------------chHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 76 V--KAG-------------SAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 76 v--p~~-------------~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. |.. ..++++.+.+.++ .|..++|..+|.
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP 124 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNP 124 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCh
Confidence 9 332 1244555666665 466777777774
No 220
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.41 E-value=0.00046 Score=70.90 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=78.1
Q ss_pred CcEEEEcccHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMND--HGFTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.+++|||+|..+....+.+.. .-.+|.+|||++++.+.|.+.-.. +.++..++++++++.. +|+|++++|+..
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~---ADIIvtaT~S~~- 205 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEG---ADIITTVTADKT- 205 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCCCC-
Confidence 579999999999888766653 335899999999999988764321 2345668999999988 999999998643
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
...+++. ..+++|..|.-.|+..| +.++.-..+-.+.-.|+|.
T Consensus 206 ~~Pvl~~--~~lkpG~hV~aIGs~~p-~~~Eld~~~l~~a~v~vD~ 248 (346)
T PRK07589 206 NATILTD--DMVEPGMHINAVGGDCP-GKTELHPDILRRARVFVEY 248 (346)
T ss_pred CCceecH--HHcCCCcEEEecCCCCC-CcccCCHHHHhcCEEEECC
Confidence 1122321 35688998888877554 2333332222222245664
No 221
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.41 E-value=0.00044 Score=72.82 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=64.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||.|.||..++.+|.+.|. +++++||++++.+.+.+.... ..+ ..++++.+.+..+|+||.|++.+..+-
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~-~~~---~~~~~l~~~l~~aDiVI~aT~a~~~vi 257 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRN-ASA---HYLSELPQLIKKADIIIAAVNVLEYIV 257 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcC-CeE---ecHHHHHHHhccCCEEEECcCCCCeeE
Confidence 589999999999999999999995 799999999999988875321 112 233344333445999999998875542
Q ss_pred HHHHhhcccCCCCCEEEcCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~ 104 (490)
. .+... .+..++||.+.
T Consensus 258 ~--~~~~~--~~~~~~iDLav 274 (414)
T PRK13940 258 T--CKYVG--DKPRVFIDISI 274 (414)
T ss_pred C--HHHhC--CCCeEEEEeCC
Confidence 1 11111 23457788864
No 222
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.38 E-value=0.0015 Score=65.49 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=67.1
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHH-HHH-HcccCCCCeeccCCHHHHHhh--CCCCcEEEE
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVD-SFL-ANEAKGTNIIGAHSLEELVKN--LKKPRRVMM 74 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~l~-~~g~~~~~i~~~~s~~e~v~~--l~~~dvIil 74 (490)
|..+.||||||+|.+|..+...+.+. +.++. ++|+++++.. ++. +.|.. ..+++.+++++. +++.|+||.
T Consensus 1 ~m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~----~~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 1 MMSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVA----TSAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCC----cccCCHHHHHhCcCCCCCCEEEE
Confidence 44567999999999999988888764 55655 6789876432 222 22321 124788988864 356899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
++|+. ...+....+ ++.|..|||.+...
T Consensus 77 AT~a~-~H~e~a~~a---~eaGk~VID~sPA~ 104 (302)
T PRK08300 77 ATSAG-AHVRHAAKL---REAGIRAIDLTPAA 104 (302)
T ss_pred CCCHH-HHHHHHHHH---HHcCCeEEECCccc
Confidence 99885 444444433 45799999988643
No 223
>PRK04148 hypothetical protein; Provisional
Probab=97.37 E-value=0.0011 Score=58.42 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=71.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|..||+| -|..+|..|.+.|++|++.|.+++.++...+.+.....--.++..-++..+ +|+|..+=|+. .+..
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~---a~liysirpp~-el~~ 92 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKN---AKLIYSIRPPR-DLQP 92 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhc---CCEEEEeCCCH-HHHH
Confidence 579999999 899999999999999999999999998877654321000123334455565 89999998886 4555
Q ss_pred HHHhhcccCCCCCEEEcCCCCCh
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
-+-.+...+..+-+|...|+-.|
T Consensus 93 ~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 93 FILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCC
Confidence 55567766766667777777543
No 224
>KOG0409|consensus
Probab=97.37 E-value=0.00057 Score=67.47 Aligned_cols=107 Identities=21% Similarity=0.170 Sum_probs=73.7
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHH-HHHhcccCCCCCc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEIT-KDILKFKDTDGAP 427 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~-~~~~~~~~~~~~~ 427 (490)
+.|+|..|.|..+|++.|-+-..+|-.++|+..|..+ +|++...+ ++.-|.|..-|+-++.= -.+++ .|-++..
T Consensus 193 ~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r-~GLd~~~l---~eiln~G~~~S~~~~~~~p~m~k-~dy~p~f 267 (327)
T KOG0409|consen 193 VVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADR-LGLDAKKL---LEILNTGRCWSSMFYNPVPGMLK-GDYNPGF 267 (327)
T ss_pred EEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHH---HHHHhcCCcccHHHhCcCchhhc-CCCCCcc
Confidence 5689999999999999999999999999999999987 89965554 44455566444443321 12222 1211212
Q ss_pred chhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHH
Q psy9637 428 LVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSR 466 (490)
Q Consensus 428 ~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r 466 (490)
-++-+.. .-+-...+|.+.++|+|+.+.|....
T Consensus 268 ~~~~m~K------DLgla~~~a~~~~~~~P~~slA~qly 300 (327)
T KOG0409|consen 268 ALKLMVK------DLGLALNAAESVKVPMPLGSLAHQLY 300 (327)
T ss_pred hHHHHHH------HHHHHHHhhhccCCCCchHHHHHHHH
Confidence 2222222 23467788999999999999987653
No 225
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.35 E-value=0.0016 Score=71.99 Aligned_cols=112 Identities=12% Similarity=0.154 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHh--hCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVK--NLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~--~l~~~dvIil~vp~~~~v 82 (490)
++|-|+|.|++|..+++.|.++|+++++.|.|+++++.+.+.+.. -+..-.+-.++.+ .++++|.+++++++++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~--v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n 478 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYK--VYYGDATQLELLRAAGAEKAEAIVITCNEPEDT 478 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCe--EEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHH
Confidence 579999999999999999999999999999999999998876532 1122223333333 356799999999997555
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
..++..+...-+.-.+++-..+ ....+.+.+.|+..
T Consensus 479 ~~i~~~~r~~~p~~~IiaRa~~------~~~~~~L~~~Ga~~ 514 (601)
T PRK03659 479 MKIVELCQQHFPHLHILARARG------RVEAHELLQAGVTQ 514 (601)
T ss_pred HHHHHHHHHHCCCCeEEEEeCC------HHHHHHHHhCCCCE
Confidence 5555444443333345543322 22334555556543
No 226
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.32 E-value=0.0012 Score=67.10 Aligned_cols=96 Identities=17% Similarity=0.275 Sum_probs=64.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHc---cc---CCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLAN---EA---KGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~---g~---~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
.+||+|||+|.+|..+|..|+..|. ++.++|+++++++..... .. ...++....+++++ ++ +|+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~~---adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-AN---SKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-CC---CCEEEEC
Confidence 4699999999999999999998875 799999988765543221 11 01244445677763 33 8999996
Q ss_pred cCCC----ch-----------HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 76 VKAG----SA-----------VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 76 vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.-.. .. ++++.+.+..+ .+..++|..+|
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsN 121 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSN 121 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccC
Confidence 6331 11 23333455555 56778888886
No 227
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.32 E-value=0.0019 Score=70.83 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=73.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHh--hCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVK--NLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~--~l~~~dvIil~vp~~~~v 82 (490)
.+|-|+|+|++|..+++.|.++|++|++.|.|+++++.+.+.+.. -+..-.+-.+..+ .++++|.++++++++...
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~--~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~ 495 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIR--AVLGNAANEEIMQLAHLDCARWLLLTIPNGYEA 495 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCe--EEEcCCCCHHHHHhcCccccCEEEEEcCChHHH
Confidence 468899999999999999999999999999999999999876532 1112222233332 356799999999987544
Q ss_pred HHHHHhhcccCCCC-CEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 83 DDFIDKLVPLLEKG-DIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 83 ~~vl~~l~~~l~~g-~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
..++..+... .++ .++.-. + .+ +..+.+++.|+.++=.|
T Consensus 496 ~~iv~~~~~~-~~~~~iiar~-~-~~----~~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 496 GEIVASAREK-RPDIEIIARA-H-YD----DEVAYITERGANQVVMG 535 (558)
T ss_pred HHHHHHHHHH-CCCCeEEEEE-C-CH----HHHHHHHHcCCCEEECh
Confidence 4444444333 333 344332 2 11 23344455666554433
No 228
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.31 E-value=0.0016 Score=69.35 Aligned_cols=97 Identities=12% Similarity=0.185 Sum_probs=65.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-cccCCCCeec-cCCHHHHHhh-CCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA-NEAKGTNIIG-AHSLEELVKN-LKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~g~~~~~i~~-~~s~~e~v~~-l~~~dvIil~vp~~~~ 81 (490)
|+|.|+|+|.+|..++..|.+.|++|+++|+++++++.+.+ .+.. -+.. ..+...+.+. ++.+|.|+++++++ .
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~--~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~-~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVR--TVVGNGSSPDVLREAGAEDADLLIAVTDSD-E 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEE--EEEeCCCCHHHHHHcCCCcCCEEEEecCCh-H
Confidence 47999999999999999999999999999999999988765 2211 0111 2333333332 56799999999885 4
Q ss_pred HHHHHHhhcccC-CCCCEEEcCCC
Q psy9637 82 VDDFIDKLVPLL-EKGDIIIDGGN 104 (490)
Q Consensus 82 v~~vl~~l~~~l-~~g~iiId~s~ 104 (490)
....+......+ +...+|+...+
T Consensus 78 ~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 78 TNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred HHHHHHHHHHHhcCCCeEEEEECC
Confidence 444443333333 44456665433
No 229
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.30 E-value=0.00045 Score=60.05 Aligned_cols=93 Identities=19% Similarity=0.280 Sum_probs=59.3
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCC-Ce-EEEEeCChHHHHHHHHcccC---CCCeeccC-CHHHHHhhCCCCcEEEEecCC
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHG-FT-VVAYNRTTAKVDSFLANEAK---GTNIIGAH-SLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G-~~-V~v~dr~~~~~~~l~~~g~~---~~~i~~~~-s~~e~v~~l~~~dvIil~vp~ 78 (490)
||+||| .|.+|..+.+.|.++- ++ +.++.++.+.-+.+...... ...+...+ +.+++ .. +|+||+|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-SD---VDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-TT---ESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-hc---CCEEEecCch
Confidence 699999 9999999999999853 24 44667765333333322110 01122222 34444 44 8999999998
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+ ...+....+ +++|..|||.|+.+
T Consensus 77 ~-~~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 G-ASKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HHHHHHHHH---HHTTSEEEESSSTT
T ss_pred h-HHHHHHHHH---hhCCcEEEeCCHHH
Confidence 5 566666655 45788999999865
No 230
>KOG2741|consensus
Probab=97.29 E-value=0.0031 Score=63.63 Aligned_cols=118 Identities=14% Similarity=0.250 Sum_probs=85.7
Q ss_pred CCcEEEEcccHHHHHHHHHHH---HCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMN---DHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~---~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
..|+||+|+|.|+.-.++.|. +.+|.|+ ++||+.+++..|++...-. +.+.+.|.++++++ +..|+|.+..|.+
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~-~~k~y~syEeLakd-~~vDvVyi~~~~~ 83 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP-NPKAYGSYEELAKD-PEVDVVYISTPNP 83 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC-CCccccCHHHHhcC-CCcCEEEeCCCCc
Confidence 358999999999999999986 3467766 6799999999998764322 44678999999986 3469999999997
Q ss_pred chHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHcccccccc
Q psy9637 80 SAVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
+..+-+.. ++. .|+ ++++-- .....+..++.+.++.+|+.|++.
T Consensus 84 qH~evv~l-~l~---~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 84 QHYEVVML-ALN---KGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred cHHHHHHH-HHH---cCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 55544433 322 233 555532 223567788888899999877765
No 231
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.29 E-value=0.0012 Score=53.82 Aligned_cols=63 Identities=21% Similarity=0.320 Sum_probs=50.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.++++|+|.|.+|..++..|.+. +.+|.+||| |+++.+++.+..+
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r----------------------------------di~i~~~~~~~~~ 68 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR----------------------------------DILVTATPAGVPV 68 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC----------------------------------CEEEEcCCCCCCc
Confidence 36899999999999999999998 678999988 7899998876555
Q ss_pred HHHHHhhcccCCCCCEEEcCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s 103 (490)
.+- ....+.++.+|+|+.
T Consensus 69 ~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 69 LEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred hHH---HHHhcCCCCEEEecC
Confidence 432 233456788998863
No 232
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.29 E-value=0.00096 Score=69.51 Aligned_cols=95 Identities=20% Similarity=0.266 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHC---CCeEEEEeCChHHHHHHHHcccC---CC-CeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH---GFTVVAYNRTTAKVDSFLANEAK---GT-NIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~---G~~V~v~dr~~~~~~~l~~~g~~---~~-~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
.+++|||+|.++......++.- =-+|.+|||++++.++|.+.-.. +. .+..++++++++.. +|+|++|++
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~---ADIVvtaT~ 232 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG---SDIVTYCNS 232 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC---CCEEEEccC
Confidence 5799999999999999888763 24899999999999988764322 11 36678999999987 999999997
Q ss_pred CCch---HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 78 AGSA---VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 78 ~~~~---v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+... ...+++ ...+++|..|+-.|.
T Consensus 233 s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 233 GETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 6431 112332 124678888865443
No 233
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.004 Score=59.20 Aligned_cols=188 Identities=9% Similarity=0.068 Sum_probs=114.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+.+||||.|+.|.....+-...++.+. +-.|+++..+.+.+.. ...+.++....+..+++|+-||+. .+.
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~--------~a~p~d~~~~ael~~~vfv~vpd~-~~s 81 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETY--------VAPPLDVAKSAELLLLVFVDVPDA-LYS 81 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhcc--------CCCccchhhChhhhceEEecchHH-HHH
Confidence 579999999999996666555555554 3468888877765532 334445544433367888888875 344
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc---cC-CCCCccccc--cCCccCC-CCCcchHHHHHH
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG---CG-VSGGEDGAR--YGPSLMP-GGNPAAWPALKP 156 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld---~~-vsGg~~~a~--~G~~im~-GG~~~a~~~v~~ 156 (490)
.+...-. -.||++|+.||.-.. ..+.+.+.+.|..... .- .+|.++... .++.|.+ -+|+-.+..++.
T Consensus 82 ~vaa~~~--~rpg~iv~HcSga~~---~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~ 156 (289)
T COG5495 82 GVAATSL--NRPGTIVAHCSGANG---SGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQS 156 (289)
T ss_pred HHHHhcc--cCCCeEEEEccCCCc---hhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHH
Confidence 4433222 358999999987543 3444555555543222 22 344444443 3444433 578888888999
Q ss_pred HHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q psy9637 157 IFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218 (490)
Q Consensus 157 ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~ 218 (490)
+-..||.++|.+-+. .....-...+....-.+..+.++..+-+.+ |+|.-
T Consensus 157 la~emgg~~f~V~~~------~r~lYHaaa~~asnf~v~~l~~a~~i~~aa------g~Dq~ 206 (289)
T COG5495 157 LALEMGGEPFCVREE------ARILYHAAAVHASNFIVTVLADALEIYRAA------GDDQP 206 (289)
T ss_pred HHHHhCCCceeechh------HHHHHHHHHHHhhccHHHHHHHHHHHHHHh------cCCCc
Confidence 999999887765442 112222233333334456778888888888 76653
No 234
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.27 E-value=0.00024 Score=65.48 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=63.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee------------------ccCCHHHHHhhC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII------------------GAHSLEELVKNL 66 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~------------------~~~s~~e~v~~l 66 (490)
.+|.|+|.|+.|..-+..+...|++|+++|.++++.+.+...+.....+. +......+.+.+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i 100 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFI 100 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHH
Confidence 58999999999999999999999999999999998887766543211110 011111222333
Q ss_pred CCCcEEEEec--CCCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 67 KKPRRVMMLV--KAGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 67 ~~~dvIil~v--p~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+.+|+||.++ |....-.-+-++.+..++++.+|+|.|-
T Consensus 101 ~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 101 APADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred hhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 3489999644 3332222222555666789999999874
No 235
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.26 E-value=0.0018 Score=55.39 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=62.5
Q ss_pred EEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHh-hCCCCcEEEEecCCCchHHH
Q psy9637 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVK-NLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 7 IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~-~l~~~dvIil~vp~~~~v~~ 84 (490)
|-|+|.|.+|..++..|.+.+.+|++.|++++.++.+.+.+.. -+.. ..+++.+-+ .+++++.|+++.+++...-.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~--~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVE--VIYGDATDPEVLERAGIEKADAVVILTDDDEENLL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSE--EEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccc--cccccchhhhHHhhcCccccCEEEEccCCHHHHHH
Confidence 5689999999999999999877999999999999999887643 1111 233333322 35678999999988633333
Q ss_pred HHHhhcccCCCCCEEEcCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s 103 (490)
++..+....+...+++-..
T Consensus 79 ~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 79 IALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHCCCCeEEEEEC
Confidence 3333333232345555443
No 236
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.20 E-value=0.0011 Score=65.88 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=75.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhCCCCcEEEEec--CCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNLKKPRRVMMLV--KAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l~~~dvIil~v--p~~~~ 81 (490)
-||.|||.|.+|.+-|+-..--|-+|++.|+|.+++..+..... .++. ...++..+.+.+..+|+||-.| |...+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~--~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG--GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC--ceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 47999999999999999999899999999999999888765432 2332 3456666666666799999766 55445
Q ss_pred HHHHHHhhcccCCCCCEEEcCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s 103 (490)
-+-+.+++...++||.+|||..
T Consensus 247 PkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 247 PKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred ceehhHHHHHhcCCCcEEEEEE
Confidence 5566688888899999998853
No 237
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.18 E-value=0.0014 Score=69.49 Aligned_cols=124 Identities=22% Similarity=0.271 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC--------C--Ce-EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDH--------G--FT-VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~--------G--~~-V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~ 69 (490)
|+ +.+|||+|+|.||..++..|.++ | .+ +.++|+++++.+.+. ......+++++++++. +..
T Consensus 1 m~-~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-----~~~~~~~~d~~~ll~d-~~i 73 (426)
T PRK06349 1 MK-PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-----LPGILLTTDPEELVND-PDI 73 (426)
T ss_pred CC-eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-----CcccceeCCHHHHhhC-CCC
Confidence 63 46899999999999999888654 3 34 346799877643221 1112357889999864 247
Q ss_pred cEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCC-ChHHHHHHHHHHHHccccc-cccCCCCCcc
Q psy9637 70 RRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS-EYQDTDRRSKALEAKGLLY-VGCGVSGGED 134 (490)
Q Consensus 70 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~-~~~~~~~~~~~l~~~gi~~-ld~~vsGg~~ 134 (490)
|+|+.+++......+.+ ...|+.|+-||-.... ......++.+..+++|+.| +.+.|.||.+
T Consensus 74 DvVve~tg~~~~~~~~~---~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiP 137 (426)
T PRK06349 74 DIVVELMGGIEPARELI---LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIP 137 (426)
T ss_pred CEEEECCCCchHHHHHH---HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCc
Confidence 99999987643333333 3445678877743221 1122333445555667754 3555555543
No 238
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.18 E-value=0.0027 Score=61.53 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=78.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEE-EEeC----------ChHHHHHHHHcccCCCCee--ccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVV-AYNR----------TTAKVDSFLANEAKGTNII--GAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~g~~~~~i~--~~~s~~e~v~~l~~~dv 71 (490)
++|.|.|+|.+|..+++.|.+.|..|+ +.|. +.+.+.+..+....-.... ..-+++++... ++|+
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~--~~Dv 109 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLEL--DCDI 109 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceee--cccE
Confidence 689999999999999999999999998 6677 6676666554332100000 01123343332 4899
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
++-|.+.+....+.+..+. =++|+...|... +.+..+.+.++|+.|+.-
T Consensus 110 lip~a~~~~i~~~~~~~l~-----a~~I~egAN~~~--t~~a~~~L~~rGi~~~PD 158 (227)
T cd01076 110 LIPAALENQITADNADRIK-----AKIIVEAANGPT--TPEADEILHERGVLVVPD 158 (227)
T ss_pred EEecCccCccCHHHHhhce-----eeEEEeCCCCCC--CHHHHHHHHHCCCEEECh
Confidence 9999888766666666553 468888888653 355668889999988643
No 239
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.17 E-value=0.0023 Score=71.06 Aligned_cols=112 Identities=11% Similarity=0.113 Sum_probs=75.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHH--hhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELV--KNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v--~~l~~~dvIil~vp~~~~v 82 (490)
.+|-|+|.|++|..+++.|.++|+++++.|.|+++++.+.+.+.. -+..-.+-.++. ..++++|.+++++++++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~--v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n 478 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMK--VFYGDATRMDLLESAGAAKAEVLINAIDDPQTS 478 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCe--EEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH
Confidence 579999999999999999999999999999999999998876532 112222233344 3466899999999887555
Q ss_pred HHHHHhhcccCCCC-CEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 83 DDFIDKLVPLLEKG-DIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 83 ~~vl~~l~~~l~~g-~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
..++..+.. +.|+ .+++-..+ .+....+.+.|+.++
T Consensus 479 ~~i~~~ar~-~~p~~~iiaRa~d------~~~~~~L~~~Gad~v 515 (621)
T PRK03562 479 LQLVELVKE-HFPHLQIIARARD------VDHYIRLRQAGVEKP 515 (621)
T ss_pred HHHHHHHHH-hCCCCeEEEEECC------HHHHHHHHHCCCCEE
Confidence 444443333 2333 44443322 223455666677654
No 240
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.16 E-value=0.0024 Score=65.01 Aligned_cols=101 Identities=13% Similarity=0.153 Sum_probs=63.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccC----CCCeec-cCCHHHHHhhCCCCcEEEEec
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAK----GTNIIG-AHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~----~~~i~~-~~s~~e~v~~l~~~dvIil~v 76 (490)
.+||+|||+|.+|..+|..|+..|. ++.++|++.++++.....-.. ..++.. ..+.++ ++.+|+||++.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~----~~~adivIita 81 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD----CKDADLVVITA 81 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH----hCCCCEEEEec
Confidence 3699999999999999999999997 799999998876544321111 011222 334444 33499999876
Q ss_pred CCCc----h-----------HHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 77 KAGS----A-----------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 77 p~~~----~-----------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
-.+. . ++++++.+..+- ++.++|..+| |.+..
T Consensus 82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsN--P~d~~ 128 (315)
T PRK00066 82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASN--PVDIL 128 (315)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC--cHHHH
Confidence 4321 1 233334444433 5667777776 44444
No 241
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.14 E-value=0.0013 Score=67.74 Aligned_cols=97 Identities=20% Similarity=0.248 Sum_probs=59.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCeEEE-EeCChHHHHHHHHccc--CCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDH-GFTVVA-YNRTTAKVDSFLANEA--KGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~-G~~V~v-~dr~~~~~~~l~~~g~--~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|+||+|||+ |.+|..+++.|.++ +++++. .++. +..+.+.+... .......+.++++. ..+++|+|++|+|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP~ 78 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALPH 78 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCCc
Confidence 479999996 99999999999986 677654 5543 32222222110 00000013333332 12348999999999
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
+ ...+++..+. +.|..|||.|+.+-
T Consensus 79 ~-~~~~~v~~a~---~aG~~VID~S~~fR 103 (343)
T PRK00436 79 G-VSMDLAPQLL---EAGVKVIDLSADFR 103 (343)
T ss_pred H-HHHHHHHHHH---hCCCEEEECCcccC
Confidence 6 5555555443 46899999998653
No 242
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.13 E-value=0.0014 Score=64.95 Aligned_cols=95 Identities=19% Similarity=0.251 Sum_probs=65.2
Q ss_pred EEEEcc-cHHHHHHHHHHHHCC----CeEEEEeCChHHHHHHHHcc----c--CCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 7 IGLIGL-AVMGQNLILNMNDHG----FTVVAYNRTTAKVDSFLANE----A--KGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 7 IgiIGl-G~MG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~g----~--~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|+|||+ |.||..++..|+..| .+|++||+++++++.....- . ...++..++++.+.+++ +|+|+++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~---aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD---ADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC---CCEEEEC
Confidence 689999 999999999999999 79999999987766543211 0 12355556676666665 9999996
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
.-.+. .++++.+.+...- ++.++|..+|-
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP 121 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNP 121 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 52211 2334445555544 67788888763
No 243
>PRK15076 alpha-galactosidase; Provisional
Probab=97.12 E-value=0.0018 Score=68.73 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=51.2
Q ss_pred CcEEEEcccHHHHHHHH--HHH----HCCCeEEEEeCChHHHHHHHH-------cccCCCCeeccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLIL--NMN----DHGFTVVAYNRTTAKVDSFLA-------NEAKGTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~--~L~----~~G~~V~v~dr~~~~~~~l~~-------~g~~~~~i~~~~s~~e~v~~l~~~dv 71 (490)
+||+|||.|.||...+. .++ -.|.+|+++|+++++++.... ......++..+++..+.++. +|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d---ADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG---ADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC---CCE
Confidence 68999999999966655 443 246799999999988763221 11112356667787777766 999
Q ss_pred EEEecCCC
Q psy9637 72 VMMLVKAG 79 (490)
Q Consensus 72 Iil~vp~~ 79 (490)
|++++-.+
T Consensus 79 Vv~ti~vg 86 (431)
T PRK15076 79 VINAIQVG 86 (431)
T ss_pred EeEeeeeC
Confidence 99998664
No 244
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.12 E-value=0.092 Score=54.24 Aligned_cols=197 Identities=16% Similarity=0.170 Sum_probs=123.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCC-----------------CCe---eccCCHHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKG-----------------TNI---IGAHSLEELV 63 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~-----------------~~i---~~~~s~~e~v 63 (490)
.+|-|+|.|..+--+|..+.+.+. .|-+.+|...+.+.+.+.-... +.. ....+.+++.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 479999999999999999998875 6889999888777765432210 011 1245556655
Q ss_pred hhCCCCcEEEEecCCCchHHHHHHhhcc-cCCCCCEEEcCCCCChHHHHHHHHHHHHcc--cc------cc-ccCCCCCc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVDDFIDKLVP-LLEKGDIIIDGGNSEYQDTDRRSKALEAKG--LL------YV-GCGVSGGE 133 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~~vl~~l~~-~l~~g~iiId~s~~~~~~~~~~~~~l~~~g--i~------~l-d~~vsGg~ 133 (490)
.. =|.+|+|||++ +-.+|+++|-+ .|..=+.||-.|...-. ..-....+.+.| +. |+ |.-.+.+.
T Consensus 82 g~---WdtlILavtaD-AY~~VL~ql~~~~L~~vk~iVLvSPtfGS-~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 82 GE---WDTLILAVTAD-AYLDVLQQLPWEVLKRVKSIVLVSPTFGS-HLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred cc---ccEEEEEechH-HHHHHHHhcCHHHHhhCCEEEEECcccch-HHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence 55 69999999996 77888877754 34444556666654422 222223333333 22 22 22233333
Q ss_pred ccc---ccCC--ccCCC---CCcchHHHHHHHHHhhCCcee---------------------------------------
Q psy9637 134 DGA---RYGP--SLMPG---GNPAAWPALKPIFQKLNPSFE--------------------------------------- 166 (490)
Q Consensus 134 ~~a---~~G~--~im~G---G~~~a~~~v~~ll~~l~~~~~--------------------------------------- 166 (490)
... ..|- .+.+| ++....+++..+|+.++....
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~k 236 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPK 236 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcc
Confidence 221 1222 34455 344567888899999887221
Q ss_pred --e----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Q psy9637 167 --T----SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRG 226 (490)
Q Consensus 167 --~----~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~ 226 (490)
| -||+. ..+...+....-|.+.+..+. |++.-.+++.+..
T Consensus 237 YvYKL~PEGPIT--------------~~~I~~M~~lw~Ei~~i~~~l------~~~~~NLLkFm~d 282 (429)
T PF10100_consen 237 YVYKLFPEGPIT--------------PTLIRDMVQLWKEIMEILNKL------GIEPFNLLKFMND 282 (429)
T ss_pred eEEecCCCCCCC--------------HHHHHHHHHHHHHHHHHHHHc------CCCcchHHHHhcc
Confidence 1 24431 334556677889999999999 8988888888754
No 245
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.11 E-value=0.0039 Score=66.37 Aligned_cols=100 Identities=14% Similarity=0.194 Sum_probs=68.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCe-ec-cCCHHHHH-hhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNI-IG-AHSLEELV-KNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i-~~-~~s~~e~v-~~l~~~dvIil~vp~~~ 80 (490)
+++|-|+|+|.+|..+++.|.+.|++|++.|+++++.+.+.+.+.. ..+ .. ..+.+.+. ..++.+|.|+++.+++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~-~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~- 308 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPN-TLVLHGDGTDQELLEEEGIDEADAFIALTNDD- 308 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCC-CeEEECCCCCHHHHHhcCCccCCEEEECCCCc-
Confidence 4689999999999999999999999999999999999888765311 111 11 23444332 2456799999888875
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
...-.+..+...+.+..+|+-..+.
T Consensus 309 ~~n~~~~~~~~~~~~~~ii~~~~~~ 333 (453)
T PRK09496 309 EANILSSLLAKRLGAKKVIALVNRP 333 (453)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCc
Confidence 3333333344445555666655543
No 246
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.11 E-value=0.0023 Score=63.88 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=63.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHH-HHHH-cccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVD-SFLA-NEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~l~~-~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++|||||+|.||..++..+.+. ++++. ++|+++++.. .+.+ .|.. ..+++.+++++. ++.|+|++++|+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~----~~~~~~e~ll~~-~dIDaV~iaTp~~~ 76 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVK----TSAEGVDGLLAN-PDIDIVFDATSAKA 76 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCC----EEECCHHHHhcC-CCCCEEEECCCcHH
Confidence 5899999999999998888753 56665 5788887533 2232 2321 235678888864 35799999999963
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. .+.... .++.|..|||.+...
T Consensus 77 H-~e~a~~---al~aGk~VIdekPa~ 98 (285)
T TIGR03215 77 H-ARHARL---LAELGKIVIDLTPAA 98 (285)
T ss_pred H-HHHHHH---HHHcCCEEEECCccc
Confidence 3 333332 345789999887643
No 247
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.11 E-value=0.0024 Score=64.57 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=64.4
Q ss_pred EEEEcccHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHcccC------CCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 7 IGLIGLAVMGQNLILNMNDHG--FTVVAYNRTTAKVDSFLANEAK------GTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 7 IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~------~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|+|||+|.+|..+|..|+..| .+++++|+++++++.....-.. ..++....+.++ ++.+|+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~----l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYAD----AADADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHH----hCCCCEEEEcCCC
Confidence 689999999999999999999 6899999998877655432111 112332344433 3348999999865
Q ss_pred Cc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 79 GS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 79 ~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
+. .++++...+.++- |+.+||..|| |.+..
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sN--P~d~~ 121 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSN--PVDIL 121 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC--hHHHH
Confidence 32 1333444555544 6777888876 44443
No 248
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.11 E-value=0.0017 Score=69.71 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=67.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-------------cCCH-H-----HHHhh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-------------AHSL-E-----ELVKN 65 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-------------~~s~-~-----e~v~~ 65 (490)
.++.|+|.|.+|...+..+...|..|+++|+++++.+.+...+.....+.. .++. . .+.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999988877765543100000 0000 0 02334
Q ss_pred CCCCcEEEEec-----CCCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 66 LKKPRRVMMLV-----KAGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 66 l~~~dvIil~v-----p~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
++.+|+||.++ |.+ .-+.++....+++|.+|||.+.
T Consensus 245 ~~~~DIVI~TalipG~~aP---~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 245 AKEVDIIITTALIPGKPAP---KLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred hCCCCEEEECcccCCCCCC---eeehHHHHhhCCCCCEEEEeee
Confidence 55699999988 332 1223555667889999999875
No 249
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.09 E-value=0.0017 Score=66.89 Aligned_cols=95 Identities=14% Similarity=0.219 Sum_probs=61.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHccc--CCC-Ceec-cCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEA--KGT-NIIG-AHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~--~~~-~i~~-~~s~~e~v~~l~~~dvIil~vp 77 (490)
+||+|||. |.+|..+.+.|.++ ++++. ++++++..-+.+.+... ... .... ..+.+++.+. +|+||+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAED---ADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcC---CCEEEECCC
Confidence 48999998 99999999999977 67777 55655433222222111 000 0001 1245555543 899999999
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
++ ...+++..+. ..|..|||.|+.+
T Consensus 78 ~~-~s~~~~~~~~---~~G~~VIDlS~~f 102 (346)
T TIGR01850 78 HG-VSAELAPELL---AAGVKVIDLSADF 102 (346)
T ss_pred ch-HHHHHHHHHH---hCCCEEEeCChhh
Confidence 96 5555555543 4689999999865
No 250
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.09 E-value=0.0021 Score=67.13 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=71.9
Q ss_pred CcEEEEcccHHHHH-HHHHHHHCCCeEEEEeCChHHHHHHHHcccC------CC-------Ceecc--CCHHHHHhhCCC
Q psy9637 5 GDIGLIGLAVMGQN-LILNMNDHGFTVVAYNRTTAKVDSFLANEAK------GT-------NIIGA--HSLEELVKNLKK 68 (490)
Q Consensus 5 ~~IgiIGlG~MG~~-lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~------~~-------~i~~~--~s~~e~v~~l~~ 68 (490)
|||.++|.|.||++ ++..|.+.|++|++.|++++.++.+.+.|.- .. .+... .+.+++.+.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 58999999999985 5888899999999999999999999877531 11 11112 133555555556
Q ss_pred CcEEEEecCCCchHHHHHHhhcccC--------CCCCEEEcCCCCCh
Q psy9637 69 PRRVMMLVKAGSAVDDFIDKLVPLL--------EKGDIIIDGGNSEY 107 (490)
Q Consensus 69 ~dvIil~vp~~~~v~~vl~~l~~~l--------~~g~iiId~s~~~~ 107 (490)
+|+|.++|... ..+.+...|.+.| .++-+|+.|-|...
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ 126 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIR 126 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhh
Confidence 89999999874 5566665555444 23347888888653
No 251
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.09 E-value=0.0037 Score=64.31 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=60.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHc-cc-------------CCCCeeccCCHHHHHhhCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLAN-EA-------------KGTNIIGAHSLEELVKNLK 67 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~-g~-------------~~~~i~~~~s~~e~v~~l~ 67 (490)
|+||||+|+|+||..+++.+.++ +++|+ ++|++++....+.+. |. ....+....++.++...
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 36999999999999999988764 56766 457776555544432 10 01123445566666644
Q ss_pred CCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 68 KPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 68 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+|+|+.|.|.. ...+.... +++.|..+|+.+..
T Consensus 79 -vDVVIdaT~~~-~~~e~a~~---~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 -ADIVVDATPGG-VGAKNKEL---YEKAGVKAIFQGGE 111 (341)
T ss_pred -CCEEEECCCch-hhHHHHHH---HHHCCCEEEEcCCC
Confidence 78888888775 33333332 34456777777653
No 252
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.06 E-value=0.0022 Score=63.97 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=57.9
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||.|. +|.++|..|.+.|.+|+++++.. .++.+.+.+ +|+||.+++....+.
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-------------------~~l~~~~~~---ADIVIsAvg~p~~i~ 216 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-------------------KDMASYLKD---ADVIVSAVGKPGLVT 216 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------------hhHHHHHhh---CCEEEECCCCCcccC
Confidence 5899999988 99999999999999999998642 244555665 999999998864322
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. + .+++|.+|||.+..
T Consensus 217 ~---~---~vk~gavVIDvGi~ 232 (286)
T PRK14175 217 K---D---VVKEGAVIIDVGNT 232 (286)
T ss_pred H---H---HcCCCcEEEEcCCC
Confidence 2 2 46789999999974
No 253
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.05 E-value=0.004 Score=64.07 Aligned_cols=128 Identities=15% Similarity=0.165 Sum_probs=73.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHC----------CCeEE-EEeC----------ChHHHHHHHHcccCCCC---eeccCCHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH----------GFTVV-AYNR----------TTAKVDSFLANEAKGTN---IIGAHSLE 60 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~----------G~~V~-v~dr----------~~~~~~~l~~~g~~~~~---i~~~~s~~ 60 (490)
.+|+|+|+|.||..+++.|.++ +.+|+ ++|+ +.+....+.+....... ...+.++.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999998765 35544 5675 34444444432211000 01234788
Q ss_pred HHHhhCCCCcEEEEecCCCchH-HHHHHhhcccCCCCCEEEcCCCCCh-HHHHHHHHHHHHcccccc-ccCCCCCc
Q psy9637 61 ELVKNLKKPRRVMMLVKAGSAV-DDFIDKLVPLLEKGDIIIDGGNSEY-QDTDRRSKALEAKGLLYV-GCGVSGGE 133 (490)
Q Consensus 61 e~v~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~s~~~~-~~~~~~~~~l~~~gi~~l-d~~vsGg~ 133 (490)
++++. +.+|+|+.|+|+.... +...+-+...|..|..||-.+.... ....++.+..+++|..|. .+.|.+|.
T Consensus 83 ell~~-~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~gl 157 (341)
T PRK06270 83 EVIRS-VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGAM 157 (341)
T ss_pred HHhhc-cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeech
Confidence 88764 2489999999975332 1122233445667888876543211 122344455556677653 45554444
No 254
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.03 E-value=0.0014 Score=56.65 Aligned_cols=103 Identities=18% Similarity=0.326 Sum_probs=68.9
Q ss_pred CcEEEEc----ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIG----LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIG----lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++|+||| -+..|.-+..+|.++||+|+..|.....+ ..+..+.+++|.-. .+|++++++|. .
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i----------~G~~~y~sl~e~p~---~iDlavv~~~~-~ 66 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI----------LGIKCYPSLAEIPE---PIDLAVVCVPP-D 66 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE----------TTEE-BSSGGGCSS---T-SEEEE-S-H-H
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE----------CcEEeeccccCCCC---CCCEEEEEcCH-H
Confidence 3699999 79999999999999999999988764211 12346788887323 38999999998 4
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
.+.++++++... ....+++..+ ....+..+.+++.|++++.
T Consensus 67 ~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 67 KVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEe
Confidence 788888887654 4566777666 3345556777788888764
No 255
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.00 E-value=0.0021 Score=63.97 Aligned_cols=74 Identities=18% Similarity=0.285 Sum_probs=59.1
Q ss_pred CcEEEEcccHH-HHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVM-GQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~M-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||.+.. |.+++..|.+.|..|++++.. +.++.+.+.+ +|+||++++...-+.
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-------------------t~~l~~~~~~---ADIVV~avG~~~~i~ 216 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-------------------TRDLAAHTRQ---ADIVVAAVGKRNVLT 216 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-------------------CCCHHHHhhh---CCEEEEcCCCcCccC
Confidence 57999999888 999999999999999997642 3456666666 999999999764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 217 ~------~~ik~gavVIDVGin~ 233 (285)
T PRK14189 217 A------DMVKPGATVIDVGMNR 233 (285)
T ss_pred H------HHcCCCCEEEEccccc
Confidence 2 4578999999999753
No 256
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.97 E-value=0.0063 Score=58.50 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe-EEEEeCCh----------HHHHHHHHcccCCCCeec--cCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT-VVAYNRTT----------AKVDSFLANEAKGTNIIG--AHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~-V~v~dr~~----------~~~~~l~~~g~~~~~i~~--~~s~~e~v~~l~~~dv 71 (490)
++|.|.|+|++|..+|+.|.+.|.. |.+.|.+. +.++...+.+.. ..+.. ..+.+++.. + ++|+
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~-~-~~DV 100 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGS-ARVKVQDYFPGEAILG-L-DVDI 100 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCc-cccCcccccCccccee-c-cccE
Confidence 6899999999999999999999884 55678887 666655444321 01100 112233332 2 5899
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
++-|.+.+....+....+ +=++|+...|.. .+ .+..+.+.++|+.|+.-
T Consensus 101 lipaA~~~~i~~~~a~~l-----~a~~V~e~AN~p-~t-~~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 101 FAPCALGNVIDLENAKKL-----KAKVVAEGANNP-TT-DEALRILHERGIVVAPD 149 (217)
T ss_pred EeeccccCccChhhHhhc-----CccEEEeCCCCC-CC-HHHHHHHHHCCcEEECh
Confidence 999988875444444443 246888888854 22 35668889999877543
No 257
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.96 E-value=0.0027 Score=58.57 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=53.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|||+|||. |..|..++.-..+.||+|+.+-||+++...+...-.... -.-+++.+.+.|..-|+||.+.-..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~---Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQK---DIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecc---cccChhhhHhhhcCCceEEEeccCC
Confidence 58999996 999999999999999999999999998866421111001 1234555555566689999998654
No 258
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.96 E-value=0.0054 Score=59.36 Aligned_cols=106 Identities=14% Similarity=0.186 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe---EEEEeCC----hHHH-------HHHHHcccCCCCeeccCCHHHHHhhCCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT---VVAYNRT----TAKV-------DSFLANEAKGTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~---V~v~dr~----~~~~-------~~l~~~g~~~~~i~~~~s~~e~v~~l~~~d 70 (490)
++|-|+|.|.+|..+|..|.+.|.. |+++||+ .++. +.+.+.... .. ...++.+.+.. +|
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~-~~--~~~~l~~~l~~---~d 99 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNP-EK--TGGTLKEALKG---AD 99 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhcc-Cc--ccCCHHHHHhc---CC
Confidence 5899999999999999999999974 9999998 4432 233322110 01 11356566655 99
Q ss_pred EEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 71 RVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 71 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
+||-++|.+....++++.+ .++.+|++.+|-.+ ....+...+.|..
T Consensus 100 vlIgaT~~G~~~~~~l~~m----~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 100 VFIGVSRPGVVKKEMIKKM----AKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred EEEeCCCCCCCCHHHHHhh----CCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 9999998665444555444 46788889886433 2233444445553
No 259
>PRK05442 malate dehydrogenase; Provisional
Probab=96.92 E-value=0.0029 Score=64.65 Aligned_cols=107 Identities=11% Similarity=0.133 Sum_probs=64.5
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCC-------eEEEEeCChH--HHHH----HHHcc-cCCCCeeccCCHHHHHhh
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGF-------TVVAYNRTTA--KVDS----FLANE-AKGTNIIGAHSLEELVKN 65 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~dr~~~--~~~~----l~~~g-~~~~~i~~~~s~~e~v~~ 65 (490)
|+.++||+|||+ |.+|..+|..|...|. ++.++|+++. +++. +.... ....++....+..+.
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~--- 77 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVA--- 77 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHH---
Confidence 777889999998 9999999999988764 7999999543 2221 11111 000112222233233
Q ss_pred CCCCcEEEEecCC----Cc-----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 66 LKKPRRVMMLVKA----GS-----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 66 l~~~dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
++++|+|+++--. +. .++++...+.++-++..++|-.|| |-+..-
T Consensus 78 ~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN--PvDv~t 137 (326)
T PRK05442 78 FKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN--PANTNA 137 (326)
T ss_pred hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC--chHHHH
Confidence 3348999987642 11 133444556665556778888886 444443
No 260
>PRK10206 putative oxidoreductase; Provisional
Probab=96.91 E-value=0.0082 Score=61.82 Aligned_cols=111 Identities=14% Similarity=0.194 Sum_probs=70.4
Q ss_pred CcEEEEcccHHHH-HHHHHHHH--CCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQ-NLILNMND--HGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~-~lA~~L~~--~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.||||||+|.++. ..+..+.. .+++|+ ++|+++++. ++.+... .+..+++++++++. ++.|+|++++|+..
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~---~~~~~~~~~ell~~-~~iD~V~I~tp~~~ 76 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYS---HIHFTSDLDEVLND-PDVKLVVVCTHADS 76 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcC---CCcccCCHHHHhcC-CCCCEEEEeCCchH
Confidence 5899999999775 34454533 357765 689997654 4433221 12357899999974 34799999999975
Q ss_pred hHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 81 AVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
..+-++..+ +.|+ ++++-= .....+.+++.+..+++|+.+
T Consensus 77 H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l 118 (344)
T PRK10206 77 HFEYAKRAL----EAGKNVLVEKPFTPTLAEAKELFALAKSKGLTV 118 (344)
T ss_pred HHHHHHHHH----HcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence 555444433 3444 555521 113466777777777777654
No 261
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0024 Score=63.72 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=77.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCC-CeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGT-NIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~-~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.++.|+|.|-++++++..|++.|. +++++||+.++.+++.+...... .+ ......++.. ++.+|+||-++|.+-.-
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~-~~~~~~~~~~-~~~~dliINaTp~Gm~~ 204 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAV-EAAALADLEG-LEEADLLINATPVGMAG 204 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccc-cccccccccc-ccccCEEEECCCCCCCC
Confidence 579999999999999999999994 79999999999999876543211 11 1122222211 11379999999988544
Q ss_pred HH---HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 83 DD---FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 83 ~~---vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
.. .+. ...+.++.++.|+--.. ..| ...+..+++|...+|.
T Consensus 205 ~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T-plL~~A~~~G~~~idG 248 (283)
T COG0169 205 PEGDSPVP--AELLPKGAIVYDVVYNP-LET-PLLREARAQGAKTIDG 248 (283)
T ss_pred CCCCCCCc--HHhcCcCCEEEEeccCC-CCC-HHHHHHHHcCCeEECc
Confidence 32 112 34577899999985432 222 3445566677654443
No 262
>KOG3124|consensus
Probab=96.86 E-value=0.0035 Score=60.71 Aligned_cols=147 Identities=17% Similarity=0.226 Sum_probs=91.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----eEEEEeCChHHHHH-HHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF----TVVAYNRTTAKVDS-FLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~----~V~v~dr~~~~~~~-l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|+|||||.|+|...+++.+.+.|. ++..+-.+...... +...|.+ .+.+..+.++. +|+++++|++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~-----~~~~n~~~~~~---s~v~~~svKp- 71 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVK-----TVFTNLEVLQA---SDVVFLSVKP- 71 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCce-----eeechHHHHhh---ccceeEeecc-
Confidence 479999999999999999999885 45566553333333 4443332 34444666665 8999999998
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCC---CcchHHHHHH
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGG---NPAAWPALKP 156 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG---~~~a~~~v~~ 156 (490)
..+..++.++.+.+..++||+.+--+....+.+ +.+. -..+.+-+ +.-.|....+|.+++.-| ..+..+.++.
T Consensus 72 ~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~--~~l~-~~~rviRv-mpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ 147 (267)
T KOG3124|consen 72 QVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLE--SKLS-PPTRVIRV-MPNTPSVVGEGASVYAIGCHATNEDLELVEE 147 (267)
T ss_pred hhHHHHhhcCccccccceEEEEEeecccHHHHH--HhcC-CCCceEEe-cCCChhhhhcCcEEEeeCCCcchhhHHHHHH
Confidence 589999999988888999999876554332222 2221 01111111 111223334555433333 2355678888
Q ss_pred HHHhhCCc
Q psy9637 157 IFQKLNPS 164 (490)
Q Consensus 157 ll~~l~~~ 164 (490)
+|..+|..
T Consensus 148 ll~~vG~~ 155 (267)
T KOG3124|consen 148 LLSAVGLC 155 (267)
T ss_pred HHHhcCcc
Confidence 88888763
No 263
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=96.86 E-value=0.0051 Score=62.38 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=59.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCe--EEEEeCCh--HHHHHHH----Hc---ccCCCCeeccCCHHHHHhhCCCCcEE
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFT--VVAYNRTT--AKVDSFL----AN---EAKGTNIIGAHSLEELVKNLKKPRRV 72 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~--V~v~dr~~--~~~~~l~----~~---g~~~~~i~~~~s~~e~v~~l~~~dvI 72 (490)
|||+|||. |.+|..++..|+..|+. |+++|+++ ++++... +. .....++....+.++ +. .+|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~---~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VA---GSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hC---CCCEE
Confidence 58999997 99999999999999974 99999964 3332211 10 000113433445444 33 38999
Q ss_pred EEecCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 73 MMLVKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 73 il~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
|+++..+. .++++...+.+.. ++.+||-.+|..+
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd 125 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVD 125 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchH
Confidence 99995321 1333445555555 4555665665443
No 264
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.81 E-value=0.0052 Score=66.19 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=66.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeecc--------------CCHHH-----HHhh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGA--------------HSLEE-----LVKN 65 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~--------------~s~~e-----~v~~ 65 (490)
.+|.|+|.|.+|...+..+...|.+|+++|+++++.+...+.|+....+... .+..+ +.+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~ 245 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQ 245 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999888766531001000 01101 1122
Q ss_pred CCCCcEEEEecCCCc--hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 66 LKKPRRVMMLVKAGS--AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 66 l~~~dvIil~vp~~~--~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+..+|+||.++..+. +-.-+.++....+++|.+|+|.+.
T Consensus 246 ~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 246 AKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 245788888875421 112223556666778888888765
No 265
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.80 E-value=0.0068 Score=55.82 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=53.2
Q ss_pred EEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 7 IGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 7 IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|.|+|. |.+|..+++.|.+.||+|+++.|++++.+. ..+.+ .+. -..+++.+.+.++.+|+|+.+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~--~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVE--IIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEE--EEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccc--cceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 678995 999999999999999999999999998776 22211 011 1356666667777799999999764
No 266
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.76 E-value=0.0049 Score=61.37 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=59.3
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||-+. +|.++|..|.+.|..|+++++. +.++.+.+.. +|+||.++.-+..+.
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~-------------------T~~l~~~~~~---ADIvi~avG~p~~v~ 217 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF-------------------TKNLRHHVRN---ADLLVVAVGKPGFIP 217 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECC-------------------CCCHHHHHhh---CCEEEEcCCCccccc
Confidence 5899999988 9999999999999999999753 3456666776 999999996654332
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 218 ~------~~vk~gavVIDvGin~ 234 (285)
T PRK10792 218 G------EWIKPGAIVIDVGINR 234 (285)
T ss_pred H------HHcCCCcEEEEccccc
Confidence 2 4578999999999643
No 267
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.75 E-value=0.011 Score=56.08 Aligned_cols=33 Identities=18% Similarity=0.474 Sum_probs=30.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRT 36 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~ 36 (490)
..+|+|||+|.||..+|.+|++.|+ +++++|++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3689999999999999999999999 69999998
No 268
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.71 E-value=0.0045 Score=62.73 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=61.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--eEEEEeCChHHHHH----HHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF--TVVAYNRTTAKVDS----FLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|||+|||+ |.+|..+|..|+..|. ++.++|++ +++. +.. .....++..+....++.+.++.+|+|+++.-
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~-~~~~~~i~~~~~~~~~y~~~~daDivvitaG 77 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSH-INTPAKVTGYLGPEELKKALKGADVVVIPAG 77 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHh-CCCcceEEEecCCCchHHhcCCCCEEEEeCC
Confidence 58999999 9999999999998884 79999998 2221 111 1111234322011122233445999998874
Q ss_pred CCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHH
Q psy9637 78 AGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDT 110 (490)
Q Consensus 78 ~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~ 110 (490)
.+. .++++.+.+.++ .|+.+||..+| |-++
T Consensus 78 ~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtN--PvDv 122 (310)
T cd01337 78 VPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISN--PVNS 122 (310)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccC--chhh
Confidence 421 123333455555 57889999988 4444
No 269
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.63 E-value=0.0071 Score=60.74 Aligned_cols=118 Identities=12% Similarity=0.121 Sum_probs=70.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe-EEEEeCCh---HHHHHHHHcccC-CC--Ceec--cCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT-VVAYNRTT---AKVDSFLANEAK-GT--NIIG--AHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~-V~v~dr~~---~~~~~l~~~g~~-~~--~i~~--~~s~~e~v~~l~~~dvIil~ 75 (490)
+++.|+|.|-+|++++..|++.|++ |+++||++ ++.+++.+.-.. .. .+.. .++.+++.+.++.+|+||-+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 4688999999999999999999996 99999997 666665442110 00 1111 12222333333448999999
Q ss_pred cCCCchHHHHHHhh--cccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 76 VKAGSAVDDFIDKL--VPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 76 vp~~~~v~~vl~~l--~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
+|.+-.-..--..+ ...+.++.+|+|.--.. ..| ...+..+++|...
T Consensus 207 Tp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~ 255 (289)
T PRK12548 207 TLVGMKPNDGETNIKDTSVFRKDLVVADTVYNP-KKT-KLLEDAEAAGCKT 255 (289)
T ss_pred CCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCC-CCC-HHHHHHHHCCCee
Confidence 98763210000001 12467788999996533 332 3344555666533
No 270
>PLN02602 lactate dehydrogenase
Probab=96.63 E-value=0.011 Score=60.99 Aligned_cols=101 Identities=11% Similarity=0.164 Sum_probs=63.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccC------CCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAK------GTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~------~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
+||+|||+|.+|..+|..|+..|. ++.++|+++++++.....-.. ..++....++++ ++ ++|+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~---daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TA---GSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hC---CCCEEEECC
Confidence 599999999999999999998886 799999998766543321100 123333345555 33 389999985
Q ss_pred CCC----ch-----------HHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 77 KAG----SA-----------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 77 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
-.. .. ++++...+..+ .++.++|..+| |.+...
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtN--Pvdv~t 161 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSN--PVDVLT 161 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecC--chHHHH
Confidence 331 11 22333444443 46678888886 444443
No 271
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.62 E-value=0.0098 Score=62.92 Aligned_cols=124 Identities=19% Similarity=0.122 Sum_probs=74.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH----HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--C
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK----VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--K 77 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~----~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p 77 (490)
++||.|+|+|.-|.++++.|.+.|++|+++|.++.. ...+...+.. +..-..+.+. +..+|+|+.+= |
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~---~~~g~~~~~~---~~~~d~vV~SPGi~ 80 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIE---VELGSHDDED---LAEFDLVVKSPGIP 80 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCce---eecCccchhc---cccCCEEEECCCCC
Confidence 578999999999999999999999999999966554 1111122211 1111111122 23378888652 2
Q ss_pred CCch-HHHHHH---------hhcccC--CCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCc
Q psy9637 78 AGSA-VDDFID---------KLVPLL--EKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGE 133 (490)
Q Consensus 78 ~~~~-v~~vl~---------~l~~~l--~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~ 133 (490)
...+ ++.... +|.-.. ++.-+-|-++|+...+|.-+...++..|....-++-.|.|
T Consensus 81 ~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 81 PTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred CCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence 2222 332221 222222 2335667778888777777778888888766555555544
No 272
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.62 E-value=0.017 Score=61.87 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=44.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH-----HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA-----KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
++|+|+|+|.-|.++|+.|.+.|++|+++|+++. ..+.+.+.|.. +..-....+.+.. +|+||.+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~---~~~~~~~~~~~~~---~dlVV~S 84 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVK---LVLGENYLDKLDG---FDVIFKT 84 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCE---EEeCCCChHHhcc---CCEEEEC
Confidence 5899999999999999999999999999998752 12344443321 2112222233333 8988877
No 273
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.61 E-value=0.006 Score=61.06 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=71.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
+++.|+|.|-.+++++..|++.|. +|+++||++++.+.+.+.... +.......+..+....++.+|+||-++|.+-.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~ 207 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMP 207 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCC
Confidence 479999999999999999999996 799999999999988764211 10001112222111122348999999987632
Q ss_pred HH-H-HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 82 VD-D-FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 82 v~-~-vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
-. . -+. ...+.++.+++|.--.. ..| ...+..+++|...
T Consensus 208 ~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~ 248 (283)
T PRK14027 208 AHPGTAFD--VSCLTKDHWVGDVVYMP-IET-ELLKAARALGCET 248 (283)
T ss_pred CCCCCCCC--HHHcCCCcEEEEcccCC-CCC-HHHHHHHHCCCEE
Confidence 11 0 010 12356778999986533 332 2334555666543
No 274
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.61 E-value=0.0024 Score=56.46 Aligned_cols=121 Identities=16% Similarity=0.259 Sum_probs=72.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.||.|+|+|.+|..++.+|++.|. +++++|.+.=....+..... ....+ .-+...++.+.++ .|++=+.+.+..
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~-np~~~v~~~~~~- 80 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEI-NPDVEVEAIPEK- 80 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHH-STTSEEEEEESH-
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHh-cCceeeeeeecc-
Confidence 589999999999999999999998 79999986433222221100 00000 0122233333322 245555566553
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
..++.+.++. ..-++||++... +.....+.+.+.+.++.|+++.+.|
T Consensus 81 ~~~~~~~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 81 IDEENIEELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp CSHHHHHHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred cccccccccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 2233344443 345899998765 4555556678888999999998764
No 275
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.59 E-value=0.004 Score=63.85 Aligned_cols=97 Identities=15% Similarity=0.223 Sum_probs=59.2
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCCeEEE--EeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGFTVVA--YNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v--~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+.|++|+|+|. |..|..+.+.|.+++|++.- +=.+.+...+..........+... +..++ + ..|++|+++|
T Consensus 1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~-~~~~~-~---~vD~vFla~p 75 (336)
T PRK05671 1 MSQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREV-DSFDF-S---QVQLAFFAAG 75 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeC-ChHHh-c---CCCEEEEcCC
Confidence 777789999996 99999999999988885442 222322222111111111111111 22233 3 3899999999
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.+ ....++..+. ..|..|||.|..+
T Consensus 76 ~~-~s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 76 AA-VSRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred HH-HHHHHHHHHH---HCCCeEEECchhh
Confidence 75 4555555443 4688999999754
No 276
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.59 E-value=0.008 Score=60.35 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=72.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCh---HHHHHHHHcccCC--CCeeccCCHHH---HHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTT---AKVDSFLANEAKG--TNIIGAHSLEE---LVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~---~~~~~l~~~g~~~--~~i~~~~s~~e---~v~~l~~~dvIil~ 75 (490)
+++.|+|.|-.+++++..|+..|. +|+++||++ ++.+.+.+..... ..+. ..++++ +.+.+..+|+||-+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~-~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT-VTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEE-EechhhhhhhhhhcccCCEEEEC
Confidence 479999999999999999999886 899999994 5777776542110 0111 222321 22234458999999
Q ss_pred cCCCchH--HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 76 VKAGSAV--DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 76 vp~~~~v--~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
+|.+-.- +...-.-...++++.+|+|.--. |..| ...+..+++|...+
T Consensus 204 Tp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~ 253 (288)
T PRK12749 204 TKVGMKPLENESLVNDISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTI 253 (288)
T ss_pred CCCCCCCCCCCCCCCcHHHCCCCCEEEEecCC-CccC-HHHHHHHHCCCeEE
Confidence 9876321 11000001235678899998643 3333 34455666775443
No 277
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.58 E-value=0.015 Score=59.66 Aligned_cols=121 Identities=12% Similarity=0.189 Sum_probs=70.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-----CCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-----GTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-----~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
.+|.|||+|.+|..+|.+|++.|+ +++++|++.-....+.....- +....-+....+.+..+ .+++-+..++.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i-np~v~i~~~~~ 103 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI-NSEVEIVPVVT 103 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH-CCCcEEEEEec
Confidence 589999999999999999999998 899999875222111110000 00000112222223322 25666666654
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
. ...+.++++ +..-|+|||++.. +.....+.+.+.+.++.++.+.+.|
T Consensus 104 ~-~~~~~~~~~---~~~~DlVid~~D~-~~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 104 D-VTVEELEEL---VKEVDLIIDATDN-FDTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred c-CCHHHHHHH---hcCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 3 222333443 4456899999753 4443444466677788887776544
No 278
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.57 E-value=0.063 Score=60.34 Aligned_cols=99 Identities=15% Similarity=0.308 Sum_probs=71.4
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCcccc--------ccCC-c
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGEDGA--------RYGP-S 141 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~~a--------~~G~-~ 141 (490)
||+|+|. ..+.+++.++.++++++.+|.|.+++.........+.+......|+.. |+.|.+..- ..|. .
T Consensus 1 vila~Pv-~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPV-AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCH-HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 6899999 488999999999999999999999987444343333332222468877 677665322 3555 4
Q ss_pred cCC---CCCcchHHHHHHHHHhhCCceeeCCCC
Q psy9637 142 LMP---GGNPAAWPALKPIFQKLNPSFETSAPT 171 (490)
Q Consensus 142 im~---GG~~~a~~~v~~ll~~l~~~~~~~g~~ 171 (490)
+++ ..++++++.++.+++.+|++++.+.+.
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~ 112 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAARADVRAMSAE 112 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEEEECCHH
Confidence 444 235678999999999999998887663
No 279
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.54 E-value=0.009 Score=56.77 Aligned_cols=121 Identities=14% Similarity=0.236 Sum_probs=70.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|.+|..++.+|++.|. +++++|.+.-....+..... ....+ .-+....+.+.++ .+++-+...+..
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~- 99 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL-NSDIQVTALKER- 99 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh-CCCCEEEEehhc-
Confidence 589999999999999999999997 89999987432222221100 00000 0112222223322 256666655543
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
...+-+. ..++.-|+||++..+ +.......+.+.+.++.|+++.+.|
T Consensus 100 i~~~~~~---~~~~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 100 VTAENLE---LLINNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred CCHHHHH---HHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 2222222 234456899998754 3444444477778899888887654
No 280
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.52 E-value=0.019 Score=51.34 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=52.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|+|- ...|.+++..|.+.|..|++++++ +.++++.++. +|+|+.+++....++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~-------------------t~~l~~~v~~---ADIVvsAtg~~~~i~ 86 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK-------------------TIQLQSKVHD---ADVVVVGSPKPEKVP 86 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCC-------------------CcCHHHHHhh---CCEEEEecCCCCccC
Confidence 46777774 566777777777777777777643 2256667776 999999998753221
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++|.+|+|.+...
T Consensus 87 ------~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 87 ------TEWIKPGATVINCSPTK 103 (140)
T ss_pred ------HHHcCCCCEEEEcCCCc
Confidence 13578999999998754
No 281
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.52 E-value=0.0067 Score=60.69 Aligned_cols=73 Identities=19% Similarity=0.345 Sum_probs=55.4
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||.|. .|.+++..|.+.|.+|+++++.. .++.+.+.. +|+||.+++.+..+.
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t-------------------~~L~~~~~~---aDIvI~AtG~~~~v~ 217 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRT-------------------QNLPELVKQ---ADIIVGAVGKPELIK 217 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc-------------------hhHHHHhcc---CCEEEEccCCCCcCC
Confidence 5899999997 99999999999999999999732 233333344 899999996543222
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. ..+++|.+|+|.+..
T Consensus 218 ---~---~~lk~gavViDvg~n 233 (283)
T PRK14192 218 ---K---DWIKQGAVVVDAGFH 233 (283)
T ss_pred ---H---HHcCCCCEEEEEEEe
Confidence 1 346899999999864
No 282
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.49 E-value=0.012 Score=58.64 Aligned_cols=73 Identities=12% Similarity=0.242 Sum_probs=57.5
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||-+. +|.++|..|.+.|..|++++.. +.++.+.+.+ +|+||.++.-+..+.
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~-------------------T~~l~~~~~~---ADIvv~AvG~p~~i~ 222 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF-------------------TDDLKKYTLD---ADILVVATGVKHLIK 222 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEecc-------------------CCCHHHHHhh---CCEEEEccCCccccC
Confidence 5899999988 9999999999999999999842 3456666666 999999886643221
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. ..+++|.+|||.|..
T Consensus 223 ---~---~~vk~gavVIDvGin 238 (287)
T PRK14176 223 ---A---DMVKEGAVIFDVGIT 238 (287)
T ss_pred ---H---HHcCCCcEEEEeccc
Confidence 1 257799999999974
No 283
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.48 E-value=0.018 Score=60.80 Aligned_cols=39 Identities=18% Similarity=0.407 Sum_probs=34.2
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKV 40 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~ 40 (490)
|.. .+|.|||+|.+|.++|+.|.+.|++|+++|+++...
T Consensus 1 ~~~-~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 1 MGL-QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCC-CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 543 589999999999999999999999999999887643
No 284
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.44 E-value=0.0085 Score=54.71 Aligned_cols=74 Identities=19% Similarity=0.361 Sum_probs=51.2
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLA-VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG-~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||-+ .+|.+++..|.++|..|++++.. +.++++.++. +|+||.++....-++
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~-------------------T~~l~~~~~~---ADIVVsa~G~~~~i~ 94 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK-------------------TKNLQEITRR---ADIVVSAVGKPNLIK 94 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT-------------------SSSHHHHHTT---SSEEEE-SSSTT-B-
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCC-------------------CCcccceeee---ccEEeeeeccccccc
Confidence 589999987 59999999999999999998865 2456666666 999999997753321
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++|.+|||+|...
T Consensus 95 ------~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 95 ------ADWIKPGAVVIDVGINY 111 (160)
T ss_dssp ------GGGS-TTEEEEE--CEE
T ss_pred ------cccccCCcEEEecCCcc
Confidence 12578999999999854
No 285
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.39 E-value=0.0092 Score=60.57 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=61.1
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCC--eEEEEeCChHHHH--HHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 6 DIGLIGL-AVMGQNLILNMNDHGF--TVVAYNRTTAKVD--SFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 6 ~IgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~~--~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
||+|||+ |.+|..+|..|+..++ ++.++|+++...+ .+.. .....++..+.+..+..+.++++|+|+++.-.+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~-~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~ 79 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSH-IPTAASVKGFSGEEGLENALKGADVVVIPAGVPR 79 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhc-CCcCceEEEecCCCchHHHcCCCCEEEEeCCCCC
Confidence 6999999 9999999999998886 7999999862111 1111 1111233321111112233444999998874421
Q ss_pred ---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHH
Q psy9637 81 ---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDT 110 (490)
Q Consensus 81 ---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~ 110 (490)
.++++...+.++ .|+.+||..|| |-++
T Consensus 80 ~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsN--PvDv 121 (312)
T TIGR01772 80 KPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITN--PVNS 121 (312)
T ss_pred CCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecC--chhh
Confidence 133344555555 57888888887 4443
No 286
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.39 E-value=0.0082 Score=55.68 Aligned_cols=120 Identities=12% Similarity=0.180 Sum_probs=64.6
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCe--eccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
||.|||+|.||..++.+|++.|. +++++|.+.-....+.........+ .-+......++++ .+++=+...+.. ..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~l-np~v~i~~~~~~-~~ 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREI-NPFVKIEAINIK-ID 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHH-CCCCEEEEEEee-cC
Confidence 58999999999999999999998 5999998752111111110000000 0011122222222 144445444432 11
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc-cccccccCCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK-GLLYVGCGVSG 131 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~-gi~~ld~~vsG 131 (490)
.+-+++ .++.-|+|||+.- .+..-....+.+.++ ++.|+-+.+.+
T Consensus 79 ~~~~~~---~l~~~DlVi~~~d-~~~~r~~i~~~~~~~~~ip~i~~~~~~ 124 (174)
T cd01487 79 ENNLEG---LFGDCDIVVEAFD-NAETKAMLAESLLGNKNKPVVCASGMA 124 (174)
T ss_pred hhhHHH---HhcCCCEEEECCC-CHHHHHHHHHHHHHHCCCCEEEEehhh
Confidence 222222 3445689999954 333333344666665 88877665443
No 287
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.38 E-value=0.018 Score=58.94 Aligned_cols=110 Identities=20% Similarity=0.325 Sum_probs=72.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC-C-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH-G-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
++|.|+|. |.||..+++.|+++ | .++++++|++++...+..+... .. ..++.+.+. .+|+|+.+......
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-~~---i~~l~~~l~---~aDiVv~~ts~~~~ 228 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-GK---ILSLEEALP---EADIVVWVASMPKG 228 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-cc---HHhHHHHHc---cCCEEEECCcCCcC
Confidence 58999998 89999999999854 5 5899999999888887654321 11 224444444 49999988765432
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVS 130 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vs 130 (490)
+ +++. ..+.++.++||.+- |.+..... ...|+..+|.++.
T Consensus 229 ~--~I~~--~~l~~~~~viDiAv--PRDVd~~v---~~~~V~v~~gG~V 268 (340)
T PRK14982 229 V--EIDP--ETLKKPCLMIDGGY--PKNLDTKV---QGPGIHVLKGGIV 268 (340)
T ss_pred C--cCCH--HHhCCCeEEEEecC--CCCCCccc---CCCCEEEEeCCcc
Confidence 1 1110 13368899999974 44443222 2256777776653
No 288
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.36 E-value=0.019 Score=58.54 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=58.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeecc--CCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGA--HSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~--~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.+|+|+|+|-+|..-.+.....|.+|+++||++++.+.+.+.|+. .+... .+..+.+.. ..|+||.+++ ...+
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd--~~i~~~~~~~~~~~~~--~~d~ii~tv~-~~~~ 242 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD--HVINSSDSDALEAVKE--IADAIIDTVG-PATL 242 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc--EEEEcCCchhhHHhHh--hCcEEEECCC-hhhH
Confidence 579999999666544444444899999999999999988887764 11111 112222222 1788998888 5555
Q ss_pred HHHHHhhcccCCCCCEEEcCCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
...++ .|+++-.++-.|..
T Consensus 243 ~~~l~----~l~~~G~~v~vG~~ 261 (339)
T COG1064 243 EPSLK----ALRRGGTLVLVGLP 261 (339)
T ss_pred HHHHH----HHhcCCEEEEECCC
Confidence 54444 44555555555553
No 289
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.34 E-value=0.01 Score=63.38 Aligned_cols=107 Identities=12% Similarity=0.153 Sum_probs=72.0
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGL----AVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGl----G~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
.+|+|||. |++|..+.++|.+.|| +|+..|+....+ .| +..+.+++|+-.. +|++++++|.
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G-----~~~~~sl~~lp~~---~Dlavi~vp~ 74 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LG-----VKAYPSVLEIPDP---VDLAVIVVPA 74 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CC-----ccccCCHHHCCCC---CCEEEEecCH
Confidence 57999999 8899999999999999 565556543211 12 3357888887654 8999999998
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChH-------HHHHHHHHHHHcccccccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQ-------DTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~-------~~~~~~~~l~~~gi~~ld~ 127 (490)
. .+.++++++...- -..+||- +....+ ...++.+.+++.|++++..
T Consensus 75 ~-~~~~~l~e~~~~g-v~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 75 K-YVPQVVEECGEKG-VKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred H-HHHHHHHHHHhcC-CCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence 4 7888888776632 2334432 222221 1234446667778887764
No 290
>PRK08328 hypothetical protein; Provisional
Probab=96.33 E-value=0.024 Score=55.07 Aligned_cols=121 Identities=13% Similarity=0.219 Sum_probs=71.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCee---ccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNII---GAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i~---~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
.+|.|||+|-.|..++.+|++.|. +++++|.+.-....+..+... ...+- .+...++.+..+ .|++.+.+.+..
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~-np~v~v~~~~~~ 106 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF-NSDIKIETFVGR 106 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh-CCCCEEEEEecc
Confidence 589999999999999999999996 688998875544444322110 00000 001111112222 267777765543
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
..++-++++ ++.-|+|||+.-. +.......+.+.+.++.++.+.+.|
T Consensus 107 -~~~~~~~~~---l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 107 -LSEENIDEV---LKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred -CCHHHHHHH---HhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 222223333 4466999999765 3333333366778899888777654
No 291
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.32 E-value=0.015 Score=58.90 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=50.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec--cCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG--AHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~--~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+|.|+| .|.+|+.++..|.++||+|++.+|++++...+...+.. +.. ..+++.+.+.++.+|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~---~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAE---LVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCE---EEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4799999 59999999999999999999999998765544432221 111 2355555555666899987754
No 292
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.32 E-value=0.0073 Score=62.98 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=61.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDH-GFTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
++||+|+|. |..|..|.+.|.++ .++|+.+.++..+-+.+...... ...+....+.+.. .++.+|+||+++|++
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~--~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDA--DFSDVDAVFCCLPHG 115 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHH--HhcCCCEEEEcCCHH
Confidence 468999996 99999999999988 77999887765443332221110 0011111122211 123489999999995
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++..+ ..|..|||.|+.+
T Consensus 116 -~s~~i~~~~----~~g~~VIDlSs~f 137 (381)
T PLN02968 116 -TTQEIIKAL----PKDLKIVDLSADF 137 (381)
T ss_pred -HHHHHHHHH----hCCCEEEEcCchh
Confidence 555555543 4688999999754
No 293
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.31 E-value=0.021 Score=57.87 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=61.7
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHc----ccC-C-CCeec-cCCHHHHHhhCCCCcEEEEec
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLAN----EAK-G-TNIIG-AHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~----g~~-~-~~i~~-~~s~~e~v~~l~~~dvIil~v 76 (490)
||+|||+|.+|..+|..|+.++. ++.++|+++++++..... ..- . .++.. ..+.+++ +++|+|+++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~----~~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDC----ADADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHh----CCCCEEEECC
Confidence 69999999999999999998886 799999987765533221 110 0 11211 3444443 3489999987
Q ss_pred CC----Cch-------------HHHHHHhhcccCCCCCEEEcCCCCChHHHHHH
Q psy9637 77 KA----GSA-------------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRR 113 (490)
Q Consensus 77 p~----~~~-------------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~ 113 (490)
-. +.. ++++...+..+- ++.++|-.+| |-++...
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsN--PvDv~t~ 127 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITN--PLDIAVY 127 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecC--cHHHHHH
Confidence 43 211 112223444443 6678888887 4454433
No 294
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.31 E-value=0.019 Score=59.03 Aligned_cols=122 Identities=13% Similarity=0.202 Sum_probs=71.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-----CCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-----GTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-----~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
..+|.|||+|.+|..+|.+|++.|. +++++|.+.-....+...... +....-+....+.+.++ .+++-+....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i-np~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI-NSDVRVEAIV 102 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 899999875333333221100 00000111222333322 2566555554
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
.. ...+-+.++ +..-|+|||++.. +.....+.+.+.+.++.++.+.+.|
T Consensus 103 ~~-~~~~~~~~~---~~~~DlVid~~Dn-~~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QD-VTAEELEEL---VTGVDLIIDATDN-FETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred cc-CCHHHHHHH---HcCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeeee
Confidence 43 222222333 4456999999764 4444444477777888888776544
No 295
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.23 E-value=0.016 Score=58.98 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=59.5
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCC--CeEEEEeCChHHHH--HHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHG--FTVVAYNRTTAKVD--SFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G--~~V~v~dr~~~~~~--~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
.|.||+|||+ |.+|..+|..|+..+ .++.++|++....+ .+..... ...+...+++.+..+.++.+|+|+++.-
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~-~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDT-PAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCc-CceEEEecCCCchHHHhCCCCEEEECCC
Confidence 4679999999 999999999999655 58999999432221 1221111 1123333343332334445999998874
Q ss_pred CCch---------------HHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 78 AGSA---------------VDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 78 ~~~~---------------v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
.... ++++++.+.++ .+..+|+-.||.
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNP 127 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNP 127 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCc
Confidence 4221 12223334333 456677777774
No 296
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.22 E-value=0.015 Score=58.01 Aligned_cols=74 Identities=22% Similarity=0.350 Sum_probs=57.3
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLA-VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG-~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||-| .+|.++|..|.++|..|++++.. +.++.+.+.. +|+|+.++....-+.
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~-------------------t~~l~~~~~~---ADIvV~AvG~p~~i~ 215 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL-------------------TKDLSFYTQN---ADIVCVGVGKPDLIK 215 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC-------------------cHHHHHHHHh---CCEEEEecCCCCcCC
Confidence 589999999 99999999999999999998642 2234455666 999999997764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 216 ---~---~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 216 ---A---SMVKKGAVVVDIGINR 232 (285)
T ss_pred ---H---HHcCCCcEEEEeeccc
Confidence 1 2457999999998654
No 297
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.19 E-value=0.022 Score=58.16 Aligned_cols=126 Identities=16% Similarity=0.203 Sum_probs=70.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--------CCeEE-EEeCChHHH-------HHH---HHcccCCCCeeccC--CHHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--------GFTVV-AYNRTTAKV-------DSF---LANEAKGTNIIGAH--SLEELV 63 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--------G~~V~-v~dr~~~~~-------~~l---~~~g~~~~~i~~~~--s~~e~v 63 (490)
|+|+|||+|.+|..+++.|.++ +++|+ +.|++.... +.+ .+.+.- .. .... ++.++.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l-~~-~~~~~~~~~~ll 78 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRL-EE-IDYEKIKFDEIF 78 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCcc-cc-CCCCcCCHHHHh
Confidence 4899999999999999999873 34533 567654221 111 111100 00 0112 566665
Q ss_pred hhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHH-HHHHHHHHHHccccc-cccCCCCCcc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQD-TDRRSKALEAKGLLY-VGCGVSGGED 134 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~-~~~~~~~l~~~gi~~-ld~~vsGg~~ 134 (490)
. ..+|+|+-|.|....-.....-+.+.|+.|.-||-.+...... -.++.+..+++|.+| +.+.|.||.+
T Consensus 79 ~--~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~P 149 (326)
T PRK06392 79 E--IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVP 149 (326)
T ss_pred c--CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccc
Confidence 4 2589999999854221223344455677888888776432221 122223444556654 4666666654
No 298
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.18 E-value=0.025 Score=57.74 Aligned_cols=104 Identities=11% Similarity=0.136 Sum_probs=62.1
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCC-------eEEEEeCCh--HHHHHHH----Hcc-cCCCCeeccCCHHHHHhhCCC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGF-------TVVAYNRTT--AKVDSFL----ANE-AKGTNIIGAHSLEELVKNLKK 68 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~----~~g-~~~~~i~~~~s~~e~v~~l~~ 68 (490)
..||+|||+ |.+|.++|..|...|. +++++|+++ ++++... ... ....++....+..+. ++.
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~---~~d 79 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEA---FKD 79 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHH---hCC
Confidence 358999998 9999999999998885 799999964 2233221 111 000111222222222 334
Q ss_pred CcEEEEecCCC----c-----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 69 PRRVMMLVKAG----S-----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 69 ~dvIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
+|+|+++--.+ . .++++...+.++-+++.+||-.|| |-+..-
T Consensus 80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN--PvDv~t 136 (323)
T TIGR01759 80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN--PANTNA 136 (323)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC--cHHHHH
Confidence 89999876332 1 133444566666555778887776 444443
No 299
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.17 E-value=0.017 Score=58.63 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=80.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccC-----CCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAK-----GTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~-----~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|+||+|||. |.-|.-|.+.|+.+- .++..+..+..+-+.+.+.-.+ ..+++ .-+++++ ..+.+|+||+|+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~-~~~~~~~--~~~~~DvvFlal 78 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQ-TIDPEKI--ELDECDVVFLAL 78 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccc-cCChhhh--hcccCCEEEEec
Confidence 579999995 999999999999875 3666665443322233322111 01111 1233333 223489999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHH-HHc--cccccccCCCCCccccc---cCC--ccCCCCCc
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKAL-EAK--GLLYVGCGVSGGEDGAR---YGP--SLMPGGNP 148 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l-~~~--gi~~ld~~vsGg~~~a~---~G~--~im~GG~~ 148 (490)
|++ ...+.+..+ +.+|..|||+|+-+--......++. ... +-.+++--+-|=++-.+ .+. .--+|+-+
T Consensus 79 Phg-~s~~~v~~l---~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIAnPGCyp 154 (349)
T COG0002 79 PHG-VSAELVPEL---LEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIANPGCYP 154 (349)
T ss_pred Cch-hHHHHHHHH---HhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEeeCCCchH
Confidence 998 444444444 3467779999986532223333222 111 11222333333333221 222 33466655
Q ss_pred -chHHHHHHHHHh
Q psy9637 149 -AAWPALKPIFQK 160 (490)
Q Consensus 149 -~a~~~v~~ll~~ 160 (490)
.+.-.+.|+++.
T Consensus 155 Ta~iLal~PL~~~ 167 (349)
T COG0002 155 TAAILALAPLVKA 167 (349)
T ss_pred HHHHHHHHHHHHc
Confidence 445567898887
No 300
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.14 E-value=0.0081 Score=57.52 Aligned_cols=78 Identities=24% Similarity=0.427 Sum_probs=51.2
Q ss_pred CCcEEEEcccHHHHHHHHHH--HHCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNM--NDHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L--~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
..+|+|||+|.+|..++..+ ...|++++ ++|+++++...... +..+...+++.+++.. ..+|.||+++|..
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~----g~~v~~~~~l~~li~~-~~iD~ViIa~P~~- 157 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG----GIPVYHIDELEEVVKE-NDIEIGILTVPAE- 157 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC----CeEEcCHHHHHHHHHH-CCCCEEEEeCCch-
Confidence 35799999999999998863 35688877 57988776532211 1112233456666653 2489999999996
Q ss_pred hHHHHHH
Q psy9637 81 AVDDFID 87 (490)
Q Consensus 81 ~v~~vl~ 87 (490)
...++.+
T Consensus 158 ~~~~i~~ 164 (213)
T PRK05472 158 AAQEVAD 164 (213)
T ss_pred hHHHHHH
Confidence 4444443
No 301
>PRK05086 malate dehydrogenase; Provisional
Probab=96.14 E-value=0.019 Score=58.35 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=60.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHH---CCCeEEEEeCChHHH---HHHHHcccCCCCeec--cCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGL-AVMGQNLILNMND---HGFTVVAYNRTTAKV---DSFLANEAKGTNIIG--AHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~---~G~~V~v~dr~~~~~---~~l~~~g~~~~~i~~--~~s~~e~v~~l~~~dvIil~ 75 (490)
|||+|||+ |.+|..++..|.. .+++++++|+++... -.+.... ....+.. .+++.+. ++.+|+||++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~-~~~~i~~~~~~d~~~~---l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIP-TAVKIKGFSGEDPTPA---LEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCC-CCceEEEeCCCCHHHH---cCCCCEEEEc
Confidence 58999999 9999999988854 356899999985421 1121111 0112222 2343333 4459999999
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
.-... .++++++.+.++ .+..+|+..+| |.|+.-
T Consensus 77 aG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsN--P~D~~t 125 (312)
T PRK05086 77 AGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITN--PVNTTV 125 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccC--chHHHH
Confidence 85421 233344455554 56778888887 444443
No 302
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.11 E-value=0.016 Score=59.22 Aligned_cols=103 Identities=10% Similarity=0.095 Sum_probs=60.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC-------eEEEEeCChHH--HHH----HHHcc-cCCCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF-------TVVAYNRTTAK--VDS----FLANE-AKGTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~----l~~~g-~~~~~i~~~~s~~e~v~~l~~~ 69 (490)
+||+|||+ |.+|..+|..|+..|. ++.++|++++. ++. +.... ....++....+..+. ++++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~---~~da 79 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVA---FKDA 79 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHH---hCCC
Confidence 58999999 9999999999998886 79999995432 221 11110 000112222222222 3348
Q ss_pred cEEEEecCCCc----h-----------HHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 70 RRVMMLVKAGS----A-----------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 70 dvIil~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
|+||++--.+. . ++++...+.++-++..++|..|| |-+..-
T Consensus 80 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN--PvD~~t 135 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN--PCNTNA 135 (322)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC--cHHHHH
Confidence 99998863321 1 33344555555545777887876 455444
No 303
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.08 E-value=0.021 Score=54.75 Aligned_cols=119 Identities=13% Similarity=0.197 Sum_probs=65.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe-EEEEeCChHHHHHHHHcccCCCCe--eccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT-VVAYNRTTAKVDSFLANEAKGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~g~~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.+|.|||+|.+|..++.+|++.|.. ++++|.+.-....+.........+ .-+....+.+..+ .+++-+..++.. .
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l-np~v~v~~~~~~-i 106 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI-NPFVEIEAHNEK-I 106 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH-CCCCEEEEEeee-c
Confidence 5899999999999999999999985 999998732211121110000000 0011122222222 245555555432 2
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc-cccccccCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK-GLLYVGCGV 129 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~-gi~~ld~~v 129 (490)
..+.+.++ ++.-|+|||+.- .+.......+.+.+. ++.++.+..
T Consensus 107 ~~~~~~~~---~~~~DvVI~a~D-~~~~r~~l~~~~~~~~~~p~I~~~~ 151 (212)
T PRK08644 107 DEDNIEEL---FKDCDIVVEAFD-NAETKAMLVETVLEHPGKKLVAASG 151 (212)
T ss_pred CHHHHHHH---HcCCCEEEECCC-CHHHHHHHHHHHHHhCCCCEEEeeh
Confidence 22222233 345689999954 334444445677777 887776543
No 304
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.08 E-value=0.064 Score=57.11 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=46.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh-HHHH----HHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT-AKVD----SFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~-~~~~----~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
.++|.|+|.|.+|..+|..|++.|++|+++|++. +.++ ++.+.+. ++...+...+.... +|+||.+.-
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~---~d~vv~~~g 77 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGI---ELVLGEYPEEFLEG---VDLVVVSPG 77 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCC---EEEeCCcchhHhhc---CCEEEECCC
Confidence 3689999999999999999999999999999985 3332 2222222 23223333344343 899998764
No 305
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.04 E-value=0.078 Score=57.31 Aligned_cols=66 Identities=8% Similarity=0.130 Sum_probs=47.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
.+|.|+|+|..|.+.++.|...|++|+++|++++..+.+.+.+.. +.......+.+.. +|+||.+-
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~---~~~~~~~~~~l~~---~D~VV~Sp 78 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVA---TVSTSDAVQQIAD---YALVVTSP 78 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCE---EEcCcchHhHhhc---CCEEEECC
Confidence 589999999999999999999999999999887766655544332 2112222333333 79888765
No 306
>PLN00106 malate dehydrogenase
Probab=96.03 E-value=0.025 Score=57.64 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=59.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--eEEEEeCChHHHH--HHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF--TVVAYNRTTAKVD--SFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~~--~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
.||+|||+ |.+|..+|..|+..+. ++.++|+++...+ .+..... ...+..+.+..+..+.++.+|+||++.-.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~-~~~i~~~~~~~d~~~~l~~aDiVVitAG~~ 97 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINT-PAQVRGFLGDDQLGDALKGADLVIIPAGVP 97 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCc-CceEEEEeCCCCHHHHcCCCCEEEEeCCCC
Confidence 58999999 9999999999997765 8999999872111 1111111 112322223323334455599999987432
Q ss_pred c----h-----------HHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 80 S----A-----------VDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 80 ~----~-----------v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. . ++++++.+.++ .++.+|+..||-
T Consensus 98 ~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNP 137 (323)
T PLN00106 98 RKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNP 137 (323)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 1 1 22223344433 367788888773
No 307
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=96.02 E-value=0.027 Score=59.64 Aligned_cols=102 Identities=9% Similarity=0.140 Sum_probs=65.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC-------CC--eEEEEeCChHHHHHHHHcccC-----CCCeec-cCCHHHHHhhCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH-------GF--TVVAYNRTTAKVDSFLANEAK-----GTNIIG-AHSLEELVKNLKK 68 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~-------G~--~V~v~dr~~~~~~~l~~~g~~-----~~~i~~-~~s~~e~v~~l~~ 68 (490)
-||+|||+ |.+|..+|..|+.. |. +++.+|++.++++...-.-.. ..++.. ..+.+++ + +
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~-k---d 176 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVF-Q---D 176 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHh-C---c
Confidence 58999999 99999999999987 65 788999998887643321100 112332 3344433 3 3
Q ss_pred CcEEEEecCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 69 PRRVMMLVKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 69 ~dvIil~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
+|+||+.--.+. .++++...|.++..++.+||-.|| |-++.-
T Consensus 177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN--PvDv~t 233 (444)
T PLN00112 177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN--PCNTNA 233 (444)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC--cHHHHH
Confidence 899998764321 133344555554456778888886 445444
No 308
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.01 E-value=0.017 Score=48.91 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH-HHHhhcccC
Q psy9637 15 MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD-FIDKLVPLL 93 (490)
Q Consensus 15 MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~-vl~~l~~~l 93 (490)
-+..|+..|.+.|.+|.+||+.-.......... ..++..++++.+.++. +|.|+++++.. ..+. -.+.+...+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~--~~~~~~~~~~~~~~~~---~D~vvl~t~h~-~f~~l~~~~~~~~~ 91 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGK--LEGVEVCDDLEEALKG---ADAVVLATDHD-EFRELDWEEIAKLM 91 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCH--HHCEEEESSHHHHHTT---ESEEEESS--G-GGGCCGHHHHHHHS
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCC--ccceEEecCHHHHhcC---CCEEEEEecCH-HHhccCHHHHHHhc
Confidence 456789999999999999998866554433110 0124467889888887 89999999986 4443 345666667
Q ss_pred CCCCEEEcCCCCC
Q psy9637 94 EKGDIIIDGGNSE 106 (490)
Q Consensus 94 ~~g~iiId~s~~~ 106 (490)
.++.+|+|+-+..
T Consensus 92 ~~~~~iiD~~~~~ 104 (106)
T PF03720_consen 92 RKPPVIIDGRNIL 104 (106)
T ss_dssp CSSEEEEESSSTS
T ss_pred CCCCEEEECcccc
Confidence 7889999997754
No 309
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.00 E-value=0.014 Score=48.48 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=58.0
Q ss_pred CCcEEEEcccHHHHHHHHHHH-HCCCe-EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMN-DHGFT-VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~-~~G~~-V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
..+|.|+|+|.+|..++.++. ..|+. +.++|.++++...-. ..+....+..++.+.+ .+|+.+++||+. .
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i------~gipV~~~~~~l~~~~-~i~iaii~VP~~-~ 74 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI------GGIPVYGSMDELEEFI-EIDIAIITVPAE-A 74 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE------TTEEEESSHHHHHHHC-TTSEEEEES-HH-H
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE------CCEEeeccHHHhhhhh-CCCEEEEEcCHH-H
Confidence 357999999999998886544 56776 457899988543211 1344566999999887 499999999984 6
Q ss_pred HHHHHHhhcc
Q psy9637 82 VDDFIDKLVP 91 (490)
Q Consensus 82 v~~vl~~l~~ 91 (490)
+.+++.++..
T Consensus 75 a~~~~~~~~~ 84 (96)
T PF02629_consen 75 AQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776655
No 310
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.99 E-value=0.023 Score=56.46 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=57.8
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLA-VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG-~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||-+ .+|.++|..|.++|..|++++.. +.++.+.+.. +|+|+.++.-+.-+.
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~-------------------T~~l~~~~~~---ADIvV~AvGkp~~i~ 215 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIF-------------------TKDLKAHTKK---ADIVIVGVGKPNLIT 215 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------------CcCHHHHHhh---CCEEEEecCcccccC
Confidence 589999988 89999999999999999988642 2355666676 999999997753322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++|.+|||.|...
T Consensus 216 ------~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 216 ------EDMVKEGAIVIDIGINR 232 (281)
T ss_pred ------HHHcCCCcEEEEeeccc
Confidence 12467999999999754
No 311
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=1.9 Score=43.60 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=66.7
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccC----------------CCCe---eccCCHH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAK----------------GTNI---IGAHSLE 60 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~----------------~~~i---~~~~s~~ 60 (490)
|+.|.++-++|+|...--+|.-|..+| +.+-.++|-..+-+.+.+.-.. ..++ ....+++
T Consensus 1 m~~m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a 80 (431)
T COG4408 1 MHNMLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLA 80 (431)
T ss_pred CCcccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHH
Confidence 777889999999999999999999887 5788888865555555442211 0111 1234566
Q ss_pred HHHhhCCCCcEEEEecCCCchHHHHHHhhc-ccCCCCCEEEcCCCC
Q psy9637 61 ELVKNLKKPRRVMMLVKAGSAVDDFIDKLV-PLLEKGDIIIDGGNS 105 (490)
Q Consensus 61 e~v~~l~~~dvIil~vp~~~~v~~vl~~l~-~~l~~g~iiId~s~~ 105 (490)
++..+ =+.+|+|||++ +-.+|+++|- +.|+.=+.+|-.|.+
T Consensus 81 ~~~~d---wqtlilav~aD-aY~dvlqqi~~e~L~~vk~viLiSpt 122 (431)
T COG4408 81 QAVGD---WQTLILAVPAD-AYYDVLQQIPWEALPQVKSVILISPT 122 (431)
T ss_pred Hhhch---hheEEEEeecH-HHHHHHhcCCHhHhccccEEEEeccc
Confidence 66655 58899999996 7777876553 233333444444443
No 312
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.97 E-value=0.032 Score=53.97 Aligned_cols=122 Identities=11% Similarity=0.161 Sum_probs=71.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCe--eccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNI--IGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
..+|.|||+|..|..+|.+|++.|. +++++|.+.-....+.....- ...+ .-++...+.+..+ .|++-+...+..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI-NPDVEIEAYNER 99 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh-CCCCEEEEecce
Confidence 3589999999999999999999997 788888764322222211000 0000 0112223333322 255555556543
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
...+-+.+ .+..-|+||++.- .+.....+.+.+.+.++.|+++++.|
T Consensus 100 -i~~~~~~~---~~~~~DvVi~~~d-~~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 -LDAENAEE---LIAGYDLVLDCTD-NFATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred -eCHHHHHH---HHhCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 21222222 2344689999865 34444444477778899999988765
No 313
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.95 E-value=0.022 Score=53.95 Aligned_cols=123 Identities=18% Similarity=0.312 Sum_probs=70.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CC--CCe--eccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KG--TNI--IGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~--~~i--~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
.+|.|||+|.+|..++++|+..|. +++++|.+.-....+..... .. ..+ .-+....+.+..+ .|++-+..++.
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l-Np~v~i~~~~~ 98 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL-NPNVKLSIVEE 98 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH-CCCCEEEEEec
Confidence 689999999999999999999997 58899876332222211100 00 000 0111222223322 26666666544
Q ss_pred Cch-HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 79 GSA-VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 79 ~~~-v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
... ..+-..+ .+++=++||++... +.......+.+.++++.|+.+.+.|-
T Consensus 99 ~~~~~~~~~~~---~~~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G~ 149 (198)
T cd01485 99 DSLSNDSNIEE---YLQKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYGL 149 (198)
T ss_pred ccccchhhHHH---HHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 211 0111222 23455899988543 44445555888888998888876543
No 314
>PLN02477 glutamate dehydrogenase
Probab=95.92 E-value=0.05 Score=57.19 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=72.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEE-EEeCC----------hHHHHHHHHcccCCCCee--ccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVV-AYNRT----------TAKVDSFLANEAKGTNII--GAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~g~~~~~i~--~~~s~~e~v~~l~~~dv 71 (490)
++|.|.|+|++|...|+.|.+.|..|+ +.|.+ .+.+.+..+....-.... ..-+.+++... ++|+
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~--~~Dv 284 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE--PCDV 284 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec--cccE
Confidence 589999999999999999999999988 66776 555544333221100000 01133444332 4888
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
++-|--.+...++.+..+ +=++|+...|... +.+..+.|.++|+.|+.
T Consensus 285 liP~Al~~~I~~~na~~i-----~ak~I~egAN~p~--t~ea~~~L~~rGI~~~P 332 (410)
T PLN02477 285 LIPAALGGVINKENAADV-----KAKFIVEAANHPT--DPEADEILRKKGVVVLP 332 (410)
T ss_pred EeeccccccCCHhHHHHc-----CCcEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 876654443334444433 4578999998653 55666888999998863
No 315
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.91 E-value=0.052 Score=57.57 Aligned_cols=115 Identities=10% Similarity=0.067 Sum_probs=77.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEE-e----------CChHHHHHHHHcc-cCCCCee-----ccCCHHHHHhhCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAY-N----------RTTAKVDSFLANE-AKGTNII-----GAHSLEELVKNLK 67 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~-d----------r~~~~~~~l~~~g-~~~~~i~-----~~~s~~e~v~~l~ 67 (490)
++|.|.|.|++|...|+.|.+.|..|++. | .+.+.+.+..+.. ..-..+. ...+.+++.. +
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~-~- 310 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWS-V- 310 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccc-c-
Confidence 68999999999999999999999999876 7 6767665554321 0000000 0113333332 1
Q ss_pred CCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 68 KPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 68 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
++||++-|-..+....+....+.. ++=++|+.+.|..- +.+..+.|.++|+.|+
T Consensus 311 d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~v 364 (445)
T PRK09414 311 PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFA 364 (445)
T ss_pred CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEE
Confidence 489999888877666666666642 13478889988653 6666688899999886
No 316
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.90 E-value=0.015 Score=59.63 Aligned_cols=92 Identities=9% Similarity=0.199 Sum_probs=58.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeE---EEEeCChHHHHHHHHcccCCCCeeccC-CHHHHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTV---VAYNRTTAKVDSFLANEAKGTNIIGAH-SLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V---~v~dr~~~~~~~l~~~g~~~~~i~~~~-s~~e~v~~l~~~dvIil~vp~ 78 (490)
++||+|||. |..|.-+.+.|.++||++ ....++.+.-+.+.-.+ ..+...+ +..++ . .+|+||+|+|.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g---~~i~v~d~~~~~~-~---~vDvVf~A~g~ 73 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG---KELKVEDLTTFDF-S---GVDIALFSAGG 73 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC---ceeEEeeCCHHHH-c---CCCEEEECCCh
Confidence 368999995 999999999999988864 55554433323322111 1222221 22222 3 48999999998
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+ ...++...+. ..|..|||.|..+
T Consensus 74 g-~s~~~~~~~~---~~G~~VIDlS~~~ 97 (334)
T PRK14874 74 S-VSKKYAPKAA---AAGAVVIDNSSAF 97 (334)
T ss_pred H-HHHHHHHHHH---hCCCEEEECCchh
Confidence 6 5555555443 4688999998643
No 317
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.87 E-value=0.031 Score=53.75 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=53.9
Q ss_pred EEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChH--HHHHHHHcccCCCCe-eccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 7 IGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTA--KVDSFLANEAKGTNI-IGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 7 IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~g~~~~~i-~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|.|+|. |..|+.++..|.+.+|+|.+.-|++. ..+.+...|.. -+ .-.++.+.+.+.++..|.||++++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~--vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAE--VVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTE--EEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccce--EeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 689995 99999999999999999999999864 35566665543 01 12456777888888899999999853
No 318
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.87 E-value=0.025 Score=53.72 Aligned_cols=79 Identities=9% Similarity=0.131 Sum_probs=51.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccC-CHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAH-SLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~-s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
++|-|||.|.||...+..|.+.|++|++++++.. .+..+...+. +.... .+.+ ..+..+|+||.++.++ .+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~----i~~~~~~~~~--~~l~~adlViaaT~d~-el 83 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGK----IRWKQKEFEP--SDIVDAFLVIAATNDP-RV 83 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCC----EEEEecCCCh--hhcCCceEEEEcCCCH-HH
Confidence 5899999999999999999999999999987642 3344443321 21111 1111 1234489888888775 56
Q ss_pred HHHHHhhc
Q psy9637 83 DDFIDKLV 90 (490)
Q Consensus 83 ~~vl~~l~ 90 (490)
...+....
T Consensus 84 N~~i~~~a 91 (202)
T PRK06718 84 NEQVKEDL 91 (202)
T ss_pred HHHHHHHH
Confidence 65554443
No 319
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=95.82 E-value=0.031 Score=56.44 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=60.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcc---cC--CCCeeccCCHHHHHhhCCCCcEEEEec-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANE---AK--GTNIIGAHSLEELVKNLKKPRRVMMLV- 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g---~~--~~~i~~~~s~~e~v~~l~~~dvIil~v- 76 (490)
+||+|||.|.+|.++|..|...+. ++.+||++.++.+-....- .. ........+ .+ .+.|+.+|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~-y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GD-YEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CC-hhhhcCCCEEEEeCC
Confidence 489999999999999999987764 7999999965544322110 00 111122222 11 23344589999988
Q ss_pred -CC--Cc-----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 77 -KA--GS-----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 77 -p~--~~-----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
|- +. .++++..++...- ++.+++-.+| |-++.-
T Consensus 79 ~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtN--PvD~~t 125 (313)
T COG0039 79 VPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTN--PVDILT 125 (313)
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecC--cHHHHH
Confidence 22 11 2333445555554 4667777776 444443
No 320
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.80 E-value=0.02 Score=53.02 Aligned_cols=81 Identities=21% Similarity=0.417 Sum_probs=55.8
Q ss_pred CCcEEEEcccHHHHHHHHH-HH-HCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILN-MN-DHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~-L~-~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
+.++.|||.|++|.+++.. +. ++|++++ +||.+++++-..... -.+.-.++++..+++- +.|+.|+|||..
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~----v~V~~~d~le~~v~~~-dv~iaiLtVPa~- 157 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD----VPVYDLDDLEKFVKKN-DVEIAILTVPAE- 157 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC----eeeechHHHHHHHHhc-CccEEEEEccHH-
Confidence 4579999999999998753 44 6788765 799999866543321 2233456666666642 478999999995
Q ss_pred hHHHHHHhhc
Q psy9637 81 AVDDFIDKLV 90 (490)
Q Consensus 81 ~v~~vl~~l~ 90 (490)
...++.+.|.
T Consensus 158 ~AQ~vad~Lv 167 (211)
T COG2344 158 HAQEVADRLV 167 (211)
T ss_pred HHHHHHHHHH
Confidence 5555655544
No 321
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.78 E-value=0.027 Score=55.05 Aligned_cols=121 Identities=14% Similarity=0.199 Sum_probs=72.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCC-CCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKG-TNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~-~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|+|+|-+|..++.+|++.|. +++++|.+.-....+..+.... ..+ .-+....+.+.++ .|++-+..++..
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i-np~v~i~~~~~~- 102 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI-NPHIAINPINAK- 102 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH-CCCcEEEEEecc-
Confidence 589999999999999999999996 6888888744333332211000 000 0112222333322 266666666542
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
...+-+.+ .+..-|+|||+.-. +.....+.+.+.+.++.|+.+.+.|
T Consensus 103 i~~~~~~~---~~~~~DlVvd~~D~-~~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 103 LDDAELAA---LIAEHDIVVDCTDN-VEVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred CCHHHHHH---HhhcCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 22222222 34566899999864 3444444477788899888876654
No 322
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.76 E-value=0.11 Score=56.06 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=35.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSF 43 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l 43 (490)
+++|.|+|+|..|.++|+.|.+.|++|+++|+++....++
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~ 54 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKL 54 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHH
Confidence 3579999999999999999999999999999987655443
No 323
>PRK08223 hypothetical protein; Validated
Probab=95.75 E-value=0.042 Score=54.88 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=69.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|-+|..++.+|+..|. +++++|.+.=....+..+-. ....+ .-++..++.+.++ .|++=|...+..
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~i-NP~v~V~~~~~~- 105 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDI-NPELEIRAFPEG- 105 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHH-CCCCEEEEEecc-
Confidence 589999999999999999999997 68888876433333322111 00000 0122233333333 244444445432
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCCh-HHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEY-QDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~-~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
...+-+.++ +..-|+|||+..... .......+.+...++.++.+.+.|
T Consensus 106 l~~~n~~~l---l~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 106 IGKENADAF---LDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred cCccCHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 112222333 334589999986432 333334477788899888876544
No 324
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.68 E-value=0.041 Score=54.92 Aligned_cols=74 Identities=14% Similarity=0.276 Sum_probs=57.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.++|..|.++|..|++++.. +.++++.+.+ +|+||.++.-+.-+.
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~-------------------T~~l~~~~~~---ADIvIsAvGkp~~i~ 213 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSK-------------------TQDLPAVTRR---ADVLVVAVGRPHLIT 213 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEecCCcCccC
Confidence 57999995 678999999999999999988743 3466677776 999999997753321
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++|.+|||.|...
T Consensus 214 ------~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 214 ------PEMVRPGAVVVDVGINR 230 (287)
T ss_pred ------HHHcCCCCEEEEccCcc
Confidence 12467999999999753
No 325
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.68 E-value=0.037 Score=52.35 Aligned_cols=120 Identities=17% Similarity=0.244 Sum_probs=70.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|.+|..++++|+..|. +++++|.+.-....+.....- ...+ .-+....+.++++ .|++-+-+.+..
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~l-Np~v~i~~~~~~- 99 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRAL-NPRVKVSVDTDD- 99 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHH-CCCCEEEEEecC-
Confidence 589999999999999999999997 588998764322222111000 0000 0122223333333 367666655442
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
+.+...++ ++.=++||++.. .+.......+.+.++++.|+.+.+.|
T Consensus 100 -~~~~~~~~---~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 100 -ISEKPEEF---FSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred -ccccHHHH---HhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 21212222 334589998864 34444445577888899998887755
No 326
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.66 E-value=0.11 Score=49.56 Aligned_cols=67 Identities=7% Similarity=0.003 Sum_probs=47.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeec---cCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIG---AHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~---~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
.+|.|||.|.+|..-++.|++.|.+|++++++.. ..+.+.+.+ ++.. .....+ ++.+++||.++.+.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~----~i~~~~~~~~~~d----l~~~~lVi~at~d~ 80 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG----GITWLARCFDADI----LEGAFLVIAATDDE 80 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC----CEEEEeCCCCHHH----hCCcEEEEECCCCH
Confidence 5899999999999999999999999999987653 344554433 2222 112233 33488988887664
No 327
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.65 E-value=0.046 Score=46.89 Aligned_cols=102 Identities=20% Similarity=0.341 Sum_probs=59.0
Q ss_pred cccHHHHHHHHHHHHC----CCeEE-EEeCC----hHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 11 GLAVMGQNLILNMNDH----GFTVV-AYNRT----TAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 11 GlG~MG~~lA~~L~~~----G~~V~-v~dr~----~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
|+|.||+.++..|.++ +++|. ++||+ ......+. . ...+.+++++++.. .+|+||-|.+. ++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~-~~dvvVE~t~~-~~ 71 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFP--D-----EAFTTDLEELIDDP-DIDVVVECTSS-EA 71 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHT--H-----SCEESSHHHHHTHT-T-SEEEE-SSC-HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcc--c-----ccccCCHHHHhcCc-CCCEEEECCCc-hH
Confidence 8999999999999987 45655 67888 12111111 1 12578999998843 38999999544 45
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChH--HH-HHHHHHHHHccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQ--DT-DRRSKALEAKGLLY 124 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~--~~-~~~~~~l~~~gi~~ 124 (490)
+.+.+. +.|+.|.-||-.+..... .. .++.+..++.|.+|
T Consensus 72 ~~~~~~---~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 72 VAEYYE---KALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHHHHH---HHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHHHHH---HHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 555444 445678888887764433 12 22224444456544
No 328
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.64 E-value=0.054 Score=49.33 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=50.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||.|.+|...++.|.+.|++|+++++ +..+++.+.+. +.. ...+.+ ..++.+|+||.++.++ .+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp--~~~~~l~~l~~----i~~~~~~~~~--~dl~~a~lViaaT~d~-e~N 84 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP--EICKEMKELPY----ITWKQKTFSN--DDIKDAHLIYAATNQH-AVN 84 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC--ccCHHHHhccC----cEEEecccCh--hcCCCceEEEECCCCH-HHH
Confidence 5899999999999999999999999999964 33444443211 111 111211 1345589999887664 666
Q ss_pred HHHHhh
Q psy9637 84 DFIDKL 89 (490)
Q Consensus 84 ~vl~~l 89 (490)
..+...
T Consensus 85 ~~i~~~ 90 (157)
T PRK06719 85 MMVKQA 90 (157)
T ss_pred HHHHHH
Confidence 655433
No 329
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=95.62 E-value=0.054 Score=56.49 Aligned_cols=104 Identities=10% Similarity=0.104 Sum_probs=62.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC-------eEEEE--eCChHHHHHHHHcccC-----CCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF-------TVVAY--NRTTAKVDSFLANEAK-----GTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~--dr~~~~~~~l~~~g~~-----~~~i~~~~s~~e~v~~l~~~ 69 (490)
-||+|||+ |.+|.++|..|+..|. .+.++ |++.++++...-.-.. ..++....+..+.++ ++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~k---da 121 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFE---DA 121 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhC---CC
Confidence 58999999 9999999999998774 23344 8888876643321110 112332223223333 38
Q ss_pred cEEEEecCCC----ch-----------HHHHHHhhcccCCCCCEEEcCCCCChHHHHHH
Q psy9637 70 RRVMMLVKAG----SA-----------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRR 113 (490)
Q Consensus 70 dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~ 113 (490)
|+||++--.+ .. ++++...+.++-+++.+||-.|| |-++.-.
T Consensus 122 DIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN--PvDv~t~ 178 (387)
T TIGR01757 122 DWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN--PCNTNAL 178 (387)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC--cHHHHHH
Confidence 9999876332 11 33444556565557778888886 4555443
No 330
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.61 E-value=0.047 Score=54.41 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=57.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.++|..|.++|..|++++.. +.++.+.+.+ +|+||.++.-..-+.
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~-------------------T~~l~~~~~~---ADIvI~AvG~~~~i~ 215 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR-------------------TKDLPQVAKE---ADILVVATGLAKFVK 215 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEecCCcCccC
Confidence 57999996 568999999999999999998642 3456677776 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 216 ---~---~~vk~GavVIDvGin~ 232 (284)
T PRK14170 216 ---K---DYIKPGAIVIDVGMDR 232 (284)
T ss_pred ---H---HHcCCCCEEEEccCcc
Confidence 1 2467999999999754
No 331
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.58 E-value=0.046 Score=54.87 Aligned_cols=74 Identities=14% Similarity=0.260 Sum_probs=57.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||- ..+|.+++..|.++|..|++++.. +.++.+.+.+ +|+||+++.-+.-+.
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~-------------------T~~l~~~~~~---ADIvIsAvGkp~~i~ 216 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR-------------------TQDLASITRE---ADILVAAAGRPNLIG 216 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEccCCcCccC
Confidence 57999995 678999999999999999998642 3466677776 999999998753222
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++|.+|||.|...
T Consensus 217 ------~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 217 ------AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred ------HHHcCCCCEEEEecccc
Confidence 12567999999999754
No 332
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.58 E-value=0.044 Score=55.66 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=74.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--------CCeEE---EEeCChHHHHHHHHcccCCCCeeccCCH-----HHHHhhCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH--------GFTVV---AYNRTTAKVDSFLANEAKGTNIIGAHSL-----EELVKNLK 67 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~--------G~~V~---v~dr~~~~~~~l~~~g~~~~~i~~~~s~-----~e~v~~l~ 67 (490)
.++|+++|+|.+|+.+++-|.++ |.++. +.||+......+.-... ....+++ .+++.. +
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~ 77 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA----EVWTTDGALSLGDEVLLD-E 77 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch----hhheecccccccHhhhcc-c
Confidence 46899999999999999999875 33433 45676555431110000 1123333 344433 3
Q ss_pred CCcEEEEecCC-CchHHHHHHhhcccCCCCCEEEcCCCCChHHH-HHHHHHHHHcccc-ccccCCCCCcc
Q psy9637 68 KPRRVMMLVKA-GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDT-DRRSKALEAKGLL-YVGCGVSGGED 134 (490)
Q Consensus 68 ~~dvIil~vp~-~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~-~~~~~~l~~~gi~-~ld~~vsGg~~ 134 (490)
..|+|+-+++. -...+. ++.+...|+.|..||-.....-... .++.+..++.|.. +..+.|.||.+
T Consensus 78 ~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 78 DIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred cCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 47888888877 445555 6777778889999986544321111 1233444555654 56777777765
No 333
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.56 E-value=0.19 Score=53.42 Aligned_cols=115 Identities=20% Similarity=0.189 Sum_probs=64.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH----HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK----VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~----~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~ 78 (490)
++|.|+|.|.+|.++|+.|++.|++|+++|+++.. .+.+.+.+.. +..-....++... .+|+|+.+- |.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~---~~~~~~~~~~~~~--~~d~vV~s~gi~~ 80 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIK---VICGSHPLELLDE--DFDLMVKNPGIPY 80 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCE---EEeCCCCHHHhcC--cCCEEEECCCCCC
Confidence 57999999999999999999999999999986532 2334443321 2111233343321 268877654 33
Q ss_pred Cch-HHHHHH---------hhcccC-CCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 79 GSA-VDDFID---------KLVPLL-EKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 79 ~~~-v~~vl~---------~l~~~l-~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
+.+ ++...+ ++...+ ....|-|-+|++.-.++.-+...+...|...
T Consensus 81 ~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~ 137 (447)
T PRK02472 81 TNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHA 137 (447)
T ss_pred CCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCe
Confidence 222 222211 122122 2234555566665444444446666666443
No 334
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.55 E-value=0.041 Score=53.68 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=48.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee---ccCCHHHHHhhC-CCCcEEEEecC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII---GAHSLEELVKNL-KKPRRVMMLVK 77 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~---~~~s~~e~v~~l-~~~dvIil~vp 77 (490)
+++|.|+|. |.+|..++..|+++||+|++..|++++...+...+.. ..+. ..+...++.+.+ ..+|+||.+.+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~-~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g 94 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPS-LQIVRADVTEGSDKLVEAIGDDSDAVICATG 94 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCc-eEEEEeeCCCCHHHHHHHhhcCCCEEEECCC
Confidence 478999995 9999999999999999999999998876554322110 0011 112234444444 45788886654
No 335
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.54 E-value=0.095 Score=56.12 Aligned_cols=113 Identities=18% Similarity=0.245 Sum_probs=65.8
Q ss_pred CCCcEEEEcccHHHHH-HHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CC
Q psy9637 3 AKGDIGLIGLAVMGQN-LILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KA 78 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~ 78 (490)
..++|.|||+|..|.+ +|+.|.++|++|+++|.++. ..+.+.+.+.. +....++ +.+. .+|+|+.+- |.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~---~~~~~~~-~~~~---~~d~vv~spgi~~ 78 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAI---IFIGHDA-ENIK---DADVVVYSSAIPD 78 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCE---EeCCCCH-HHCC---CCCEEEECCCCCC
Confidence 3468999999999999 89999999999999997643 33345443322 1111222 2233 489888654 22
Q ss_pred Cc-hHHHHH---------Hhhcc-cCC-CCCEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 79 GS-AVDDFI---------DKLVP-LLE-KGDIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 79 ~~-~v~~vl---------~~l~~-~l~-~g~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
+. .+.... -+++. .+. ..-|-|-+||+.-.++.-....+...|.
T Consensus 79 ~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 79 DNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 21 222211 12222 222 2346666677765555545577777664
No 336
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.53 E-value=0.038 Score=55.01 Aligned_cols=110 Identities=13% Similarity=0.075 Sum_probs=70.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch--
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA-- 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~-- 81 (490)
.++.|+|.|-.+++++..|++.|. +|+++||++++.+.+.+... .....++ . ...+|+||-++|.+-.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~-------~~~~~~~-~-~~~~dlvINaTp~Gm~~~ 193 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG-------YEWRPDL-G-GIEADILVNVTPIGMAGG 193 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhC-------Ccchhhc-c-cccCCEEEECCccccCCC
Confidence 368999999999999999999997 59999999999998876421 1111111 1 1238999999987632
Q ss_pred HHHHHHhh-cccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 82 VDDFIDKL-VPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 82 v~~vl~~l-~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
.+.-...+ ...++++.+++|.--.. ..| ...+..+++|...+
T Consensus 194 ~~~~~~pi~~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~i 236 (272)
T PRK12550 194 PEADKLAFPEAEIDAASVVFDVVALP-AET-PLIRYARARGKTVI 236 (272)
T ss_pred CccccCCCCHHHcCCCCEEEEeecCC-ccC-HHHHHHHHCcCeEe
Confidence 11000001 12367788999986533 332 33445566665443
No 337
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.53 E-value=0.052 Score=50.95 Aligned_cols=88 Identities=20% Similarity=0.205 Sum_probs=59.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeecc--CC----HHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGA--HS----LEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~--~s----~~e~v~~l~~~dvIil~vp 77 (490)
++|.|||- ..+|.+||..|.++|..|+++|.+.-.. +...+. . +-..+ .+ +.+.+.+ +|+||.+++
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~-~-~hs~t~~~~~~~~l~~~~~~---ADIVIsAvG 135 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGES-I-RHEKHHVTDEEAMTLDCLSQ---SDVVITGVP 135 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccc-c-ccccccccchhhHHHHHhhh---CCEEEEccC
Confidence 57999996 5689999999999999999998653321 111000 0 00001 12 4555555 999999998
Q ss_pred CCch-HHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 78 AGSA-VDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 78 ~~~~-v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
.... +. ...+++|.+|||.|..
T Consensus 136 ~~~~~i~------~d~ik~GavVIDVGi~ 158 (197)
T cd01079 136 SPNYKVP------TELLKDGAICINFASI 158 (197)
T ss_pred CCCCccC------HHHcCCCcEEEEcCCC
Confidence 8643 22 1246799999999975
No 338
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.52 E-value=0.042 Score=56.14 Aligned_cols=34 Identities=12% Similarity=0.360 Sum_probs=31.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~ 38 (490)
++|-|||+|.||...+++|.++|. +|++.||+..
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 589999999999999999999995 6999999974
No 339
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.52 E-value=0.048 Score=54.21 Aligned_cols=74 Identities=20% Similarity=0.380 Sum_probs=58.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.+++..|.++|..|++++.. +.++.+.+.+ +|+||.++.-+.-+.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~-------------------T~~l~~~~~~---ADIvIsAvGkp~~i~ 216 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSK-------------------TKNLKEVCKK---ADILVVAIGRPKFID 216 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEcCCCcCccC
Confidence 57999995 678999999999999999999742 3466777776 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 217 ---~---~~ik~gavVIDvGin~ 233 (278)
T PRK14172 217 ---E---EYVKEGAIVIDVGTSS 233 (278)
T ss_pred ---H---HHcCCCcEEEEeeccc
Confidence 1 2467999999998643
No 340
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.51 E-value=0.047 Score=56.35 Aligned_cols=95 Identities=12% Similarity=0.253 Sum_probs=59.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHc--cc------CC--CCeec-cCCHHHHHhhCCCCc
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLAN--EA------KG--TNIIG-AHSLEELVKNLKKPR 70 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--g~------~~--~~i~~-~~s~~e~v~~l~~~d 70 (490)
++||+|+| .|.+|..+.+.|.++.. +++.+.++++...+.... .. .. ..+.. ..+++++ . ++|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~---~~D 78 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-D---DVD 78 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-c---CCC
Confidence 57999998 89999999999997754 888776665443321110 00 00 01111 2244443 3 389
Q ss_pred EEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 71 RVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 71 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+|+.++|.+ ...++.+.+. ..|..+||.|...
T Consensus 79 vVf~a~p~~-~s~~~~~~~~---~~G~~vIDls~~f 110 (349)
T PRK08664 79 IVFSALPSD-VAGEVEEEFA---KAGKPVFSNASAH 110 (349)
T ss_pred EEEEeCChh-HHHHHHHHHH---HCCCEEEECCchh
Confidence 999999996 4455544432 3678899998754
No 341
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.51 E-value=0.073 Score=52.17 Aligned_cols=121 Identities=15% Similarity=0.185 Sum_probs=69.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCe--eccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNI--IGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
..+|.|||+|..|..++.+|+..|. +++++|.+.-....+...... ...+ .-+....+.+.++ .|++-+...+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~l-np~v~i~~~~~~ 110 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARI-NPHIAIETINAR 110 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999999999999999996 788888764332222211100 0000 0122222333322 256666666543
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVS 130 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vs 130 (490)
...+-+.+ .++.-|+|||+.-. +..-....+.+.+.++.|+.+.+.
T Consensus 111 -i~~~~~~~---~~~~~DiVi~~~D~-~~~r~~ln~~~~~~~ip~v~~~~~ 156 (245)
T PRK05690 111 -LDDDELAA---LIAGHDLVLDCTDN-VATRNQLNRACFAAKKPLVSGAAI 156 (245)
T ss_pred -CCHHHHHH---HHhcCCEEEecCCC-HHHHHHHHHHHHHhCCEEEEeeec
Confidence 22222222 34456899999764 343333446777788888876554
No 342
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.50 E-value=0.053 Score=54.00 Aligned_cols=74 Identities=14% Similarity=0.333 Sum_probs=58.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.++|..|.++|..|++++.. +.++++...+ +|+||.++.-..-+.
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~-------------------T~~l~~~~~~---ADIvIsAvGk~~~i~ 217 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK-------------------TQNLPSIVRQ---ADIIVGAVGKPEFIK 217 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEeCCCcCccC
Confidence 57999995 678999999999999999998742 3456667776 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++|.+|||.|...
T Consensus 218 ------~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 218 ------ADWISEGAVLLDAGYNP 234 (284)
T ss_pred ------HHHcCCCCEEEEecCcc
Confidence 12467999999999754
No 343
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.48 E-value=0.041 Score=54.74 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=56.4
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLA-VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG-~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.++.|||-+ ..|.++|..|...|..|++++++. .++.+.+.. +|+||.+++-..-+.
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t-------------------~~L~~~~~~---ADIvI~Avgk~~lv~ 210 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKT-------------------ENLKAELRQ---ADILVSAAGKAGFIT 210 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecCh-------------------hHHHHHHhh---CCEEEECCCcccccC
Confidence 579999998 999999999999999999988653 244555555 899999997542221
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
.+. +++|.+|||.+..
T Consensus 211 ---~~~---vk~GavVIDVgi~ 226 (279)
T PRK14178 211 ---PDM---VKPGATVIDVGIN 226 (279)
T ss_pred ---HHH---cCCCcEEEEeecc
Confidence 222 5899999999864
No 344
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.45 E-value=0.13 Score=54.76 Aligned_cols=125 Identities=15% Similarity=0.188 Sum_probs=68.6
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH--HHHHHHHc--ccCCCCeec-cCCHHHHHhhCCCCcEEEEe
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA--KVDSFLAN--EAKGTNIIG-AHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~--g~~~~~i~~-~~s~~e~v~~l~~~dvIil~ 75 (490)
|+..-.|.|||+|..|.++|+.|.+.|++|+++|..+. ..+.+.+. +.. +.. ..++ +.+.. +|+|+.+
T Consensus 3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~---~~~~~~~~-~~~~~---~d~vV~s 75 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVE---LRCGGFDC-ELLVQ---ASEIIIS 75 (448)
T ss_pred cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcE---EEeCCCCh-HHhcC---CCEEEEC
Confidence 44334699999999999999999999999999997543 22334432 221 111 1233 33333 7887764
Q ss_pred c--CCCch-HHHHH---------Hhhccc-CCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 76 V--KAGSA-VDDFI---------DKLVPL-LEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 76 v--p~~~~-v~~vl---------~~l~~~-l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
- |.+.+ +.... -+++.. +...-|-|-+||+.-.++.-+...+...|..+.-.+..|.
T Consensus 76 p~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~ 145 (448)
T PRK03803 76 PGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGT 145 (448)
T ss_pred CCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCH
Confidence 3 22222 22111 122222 2223355556666544444444777777765444444333
No 345
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.45 E-value=0.13 Score=51.49 Aligned_cols=114 Identities=15% Similarity=0.062 Sum_probs=76.6
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHH-HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 3 AKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAK-VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 3 ~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+.+|.|.| .|.+|..+-.+|...|++ .++..+|.+ .+.+ ..+..+.++.|+.+.. .+|+.++++|..
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v-------~G~~~y~sv~dlp~~~-~~Dlavi~vpa~- 74 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTV-------LGLPVFDSVKEAVEET-GANASVIFVPAP- 74 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCccee-------cCeeccCCHHHHhhcc-CCCEEEEecCHH-
Confidence 356899999 599999999999999999 677766652 1111 1234688999987742 269999999994
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHH-HHHHHHHHHHccccccccC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQD-TDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~-~~~~~~~l~~~gi~~ld~~ 128 (490)
.+.++++++...--+..+|+- ...++. .+++.+..++.|++++..-
T Consensus 75 ~v~~~l~e~~~~Gvk~avIis--~Gf~e~~~~~l~~~a~~~girilGPN 121 (286)
T TIGR01019 75 FAADAIFEAIDAGIELIVCIT--EGIPVHDMLKVKRYMEESGTRLIGPN 121 (286)
T ss_pred HHHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHcCCEEECCC
Confidence 777788777653223333332 223333 2344577777788887643
No 346
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.43 E-value=0.15 Score=55.29 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=44.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH--HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA--KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
++|.|+|+|..|.++|+.|.+.|++|+++|.... ..+.+.+.+. +.++..-....+.+.. +|+||.+
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~-~~~~~~g~~~~~~~~~---~d~vv~s 76 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELP-DAEFVGGPFDPALLDG---VDLVALS 76 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcC-CcEEEeCCCchhHhcC---CCEEEEC
Confidence 5799999999999999999999999999997542 3344444321 1112111122333444 8988886
No 347
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.43 E-value=0.054 Score=53.96 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=57.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||- ..+|.++|..|.++|..|++++.. +.++.+.+.+ +|+||.++.-+.-+.
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~-------------------T~~l~~~~~~---ADIvI~AvG~p~~i~ 214 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK-------------------TRNLKQLTKE---ADILVVAVGVPHFIG 214 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCC-------------------CCCHHHHHhh---CCEEEEccCCcCccC
Confidence 57999995 678999999999999999998632 3456666776 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 215 ---~---~~vk~GavVIDvGin~ 231 (282)
T PRK14169 215 ---A---DAVKPGAVVIDVGISR 231 (282)
T ss_pred ---H---HHcCCCcEEEEeeccc
Confidence 1 2467999999999743
No 348
>PRK14852 hypothetical protein; Provisional
Probab=95.43 E-value=0.055 Score=62.13 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=74.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcc-cCCCCe--eccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANE-AKGTNI--IGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g-~~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
..+|+|||+|-.|..++.+|+..|. ++++.|-+.=....+..+. .....+ .-+...++.+..+ .|++=|.+.+..
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~I-NP~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSV-NPFLDIRSFPEG 410 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHH-CCCCeEEEEecC
Confidence 3689999999999999999999997 5777776533222222211 000000 0122333334333 267777777664
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHH-HHHHHHHHccccccccCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD-RRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~-~~~~~l~~~gi~~ld~~vsG 131 (490)
..++.+++++ +.=|+|||+......+.. ...+.+.+.++.++.+++.|
T Consensus 411 -I~~en~~~fl---~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 411 -VAAETIDAFL---KDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred -CCHHHHHHHh---hCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 3344444443 355899999875443343 33366778899988887655
No 349
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.42 E-value=0.054 Score=53.95 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||- ..+|.++|..|.++|..|++++.. +.++.+..+. +|+||.++.-+.-+.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~-------------------T~dl~~~~k~---ADIvIsAvGkp~~i~ 216 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF-------------------TTDLKSHTTK---ADILIVAVGKPNFIT 216 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC-------------------CCCHHHHhhh---cCEEEEccCCcCcCC
Confidence 57999995 678999999999999999998743 3456666666 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 217 ~------~~vk~gavVIDvGin~ 233 (282)
T PRK14180 217 A------DMVKEGAVVIDVGINH 233 (282)
T ss_pred H------HHcCCCcEEEEecccc
Confidence 1 2467999999998643
No 350
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.41 E-value=0.095 Score=52.64 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=75.1
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHH-HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAK-VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+.||.|.|. |.+|..+..+|.+.|++ .+|=.||.. .+.+ ..+..+.+++|+.+.. .+|+.+++||..
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v-------~G~~~y~sv~dlp~~~-~~DlAvi~vp~~- 76 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV-------LGLPVFNTVAEAVEAT-GANASVIYVPPP- 76 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE-------eCeeccCCHHHHhhcc-CCCEEEEEcCHH-
Confidence 4578999996 88999999999999997 555444331 1111 1234678888887631 269999999994
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGV 129 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~v 129 (490)
.+-++++++...--+..+|+-.+ -..++.+++.+.+++.|++++..--
T Consensus 77 ~v~~~l~e~~~~gvk~avI~s~G-f~~~~~~~l~~~a~~~girvlGPNc 124 (291)
T PRK05678 77 FAADAILEAIDAGIDLIVCITEG-IPVLDMLEVKAYLERKKTRLIGPNC 124 (291)
T ss_pred HHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHHHcCCEEECCCC
Confidence 77777777765322333443332 2222233555777788988876543
No 351
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.41 E-value=0.16 Score=54.25 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=35.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANE 47 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g 47 (490)
++|.|||+|..|.+.|..|.+.|++|+++|..+.....+.+.|
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g 52 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAG 52 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcC
Confidence 5799999999999999999999999999998765554454434
No 352
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.40 E-value=0.056 Score=53.82 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=57.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.++|..|.++|..|++++.. +.++++.+.+ +|+||.++.-+.-+.
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~-------------------T~nl~~~~~~---ADIvIsAvGkp~~i~ 215 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIK-------------------TKDLSLYTRQ---ADLIIVAAGCVNLLR 215 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEcCCCcCccC
Confidence 57999995 678999999999999999998753 3456667776 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 216 ---~---~~vk~GavVIDvGin~ 232 (282)
T PRK14166 216 ---S---DMVKEGVIVVDVGINR 232 (282)
T ss_pred ---H---HHcCCCCEEEEecccc
Confidence 1 2467999999999653
No 353
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.40 E-value=0.039 Score=56.32 Aligned_cols=102 Identities=11% Similarity=0.117 Sum_probs=59.9
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCC-------eEEEEeCCh--HHHHHHHHcccC-----CCCeeccCCHHHHHhhCCCCc
Q psy9637 6 DIGLIGL-AVMGQNLILNMNDHGF-------TVVAYNRTT--AKVDSFLANEAK-----GTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 6 ~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~g~~-----~~~i~~~~s~~e~v~~l~~~d 70 (490)
||+|||+ |.+|..++..|+..|. ++.++|+++ ++.+.....-.. ........+..+.++ .+|
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~---~aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFK---DVD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhC---CCC
Confidence 7999999 9999999999997663 599999987 543321110000 001112233334444 499
Q ss_pred EEEEecCCC----ch-----------HHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 71 RVMMLVKAG----SA-----------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 71 vIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
+|+++--.+ .. ++++...+.++-+++.++|-.|| |-+...
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN--PvD~~t 133 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN--PANTNA 133 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC--cHHHHH
Confidence 999876332 11 33444555555446667777765 455443
No 354
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.36 E-value=0.16 Score=49.93 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEE-EEe----------CChHHHHHHHH---c-cc--CC--C---CeeccCCHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVV-AYN----------RTTAKVDSFLA---N-EA--KG--T---NIIGAHSLEEL 62 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~d----------r~~~~~~~l~~---~-g~--~~--~---~i~~~~s~~e~ 62 (490)
.+|.|.|.|++|...|+.|.+.|..|+ +.| .+.+.++.+.+ . +. .. . ..+ .-+++++
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YFEGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-EeCCcch
Confidence 589999999999999999999999988 545 23444433221 1 10 00 0 011 1244444
Q ss_pred HhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 63 v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
... ++|+.+-|--.+....+.+..|.. .+=++|+...|... +.+..+.|.++|+.|+.
T Consensus 118 ~~~--~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~--t~~a~~~L~~rGI~vvP 175 (254)
T cd05313 118 WEV--PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPC--TAEAIEVFRQAGVLFAP 175 (254)
T ss_pred hcC--CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 432 489888665554334444444432 13468888888653 33566888999998863
No 355
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.34 E-value=0.058 Score=54.00 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=58.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||- ..+|.+++..|.++|..|++++.. +.++.+.+.+ +|+||.++.-+.-+.
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~-------------------T~~l~~~~~~---ADIvVsAvGkp~~i~ 218 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA-------------------TRDLADYCSK---ADILVAAVGIPNFVK 218 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEccCCcCccC
Confidence 57999995 678999999999999999998753 3456677776 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 219 ~------~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 219 Y------SWIKKGAIVIDVGINS 235 (294)
T ss_pred H------HHcCCCCEEEEecccc
Confidence 1 2467999999998653
No 356
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.29 E-value=0.079 Score=56.08 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=73.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEE--------Ee---CChHHHHHHHHcccCCC-----------CeeccCCHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVA--------YN---RTTAKVDSFLANEAKGT-----------NIIGAHSLEEL 62 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v--------~d---r~~~~~~~l~~~g~~~~-----------~i~~~~s~~e~ 62 (490)
.+|.|-|+|++|...|+.|.+.|..|++ || .+.++++.+.+...... ..+.. +.+++
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCccc
Confidence 5899999999999999999999999998 89 77777443332110000 00111 22333
Q ss_pred HhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 63 v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
... ++|+.+-|--.+....+.++.|... +=++|+...|. | .+.+..+.+.++||.|+.
T Consensus 308 ~~~--~cDVliPcAl~n~I~~~na~~l~~~--~ak~V~EgAN~-p-~t~eA~~iL~~rGI~~vP 365 (445)
T PRK14030 308 WEQ--KVDIALPCATQNELNGEDADKLIKN--GVLCVAEVSNM-G-CTAEAIDKFIAAKQLFAP 365 (445)
T ss_pred eec--cccEEeeccccccCCHHHHHHHHHc--CCeEEEeCCCC-C-CCHHHHHHHHHCCCEEeC
Confidence 321 3788876655444444444444321 34789999997 4 455666888999998763
No 357
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.29 E-value=0.12 Score=56.40 Aligned_cols=110 Identities=19% Similarity=0.196 Sum_probs=69.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhC-CCCcEEEEecCCCchH-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL-KKPRRVMMLVKAGSAV- 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l-~~~dvIil~vp~~~~v- 82 (490)
+++-|+|.|-+|.+++..|++.|++|+++||+.++.+.+.+.... .. .+..+..+.+ ..+|+|+-++|.+-.-
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~--~~---~~~~~~~~~~~~~~diiINtT~vGm~~~ 454 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGG--QA---LTLADLENFHPEEGMILANTTSVGMQPN 454 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC--ce---eeHhHhhhhccccCeEEEecccCCCCCC
Confidence 468899999999999999999999999999999998888754211 11 1223222111 1267888777766321
Q ss_pred -HH-HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 83 -DD-FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 83 -~~-vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
+. -+. ...+++..+++|.--.. ..| ...+..+++|..
T Consensus 455 ~~~~pl~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~ 493 (529)
T PLN02520 455 VDETPIS--KHALKHYSLVFDAVYTP-KIT-RLLREAEESGAI 493 (529)
T ss_pred CCCCccc--HhhCCCCCEEEEeccCC-CcC-HHHHHHHHCCCe
Confidence 11 011 12366788999996543 332 233445556643
No 358
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.28 E-value=0.057 Score=53.45 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=38.0
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
|+++++|-|.|. |.+|..+|+.|++.|++|++.+|++++.+.+.+
T Consensus 1 m~~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 1 MDMKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA 46 (277)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 554456888886 999999999999999999999999888776653
No 359
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.25 E-value=0.14 Score=58.91 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=66.5
Q ss_pred CCCCCcEEEEcccHHHHHH-HHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--
Q psy9637 1 MAAKGDIGLIGLAVMGQNL-ILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV-- 76 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~l-A~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v-- 76 (490)
|+.+++|.|||+|..|.+. |+-|.+.|++|+++|.++. ..+.+.+.|.. +. .....+.+. .+|+|+.+-
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~---~~-~g~~~~~~~---~~d~vV~SpgI 73 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGAR---FF-LGHQEEHVP---EDAVVVYSSSI 73 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCE---Ee-CCCCHHHcC---CCCEEEECCCc
Confidence 5555679999999999886 9999999999999997542 34445544432 21 112223333 378887652
Q ss_pred CCCc-hHHHHH---------HhhcccCCC--CCEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 77 KAGS-AVDDFI---------DKLVPLLEK--GDIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 77 p~~~-~v~~vl---------~~l~~~l~~--g~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
|.+. .+.... -+++..+.+ ..|-|-+||+.-.++.-+...+...|.
T Consensus 74 ~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 74 SKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 2221 122211 122222222 246666667665444444477776664
No 360
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.23 E-value=0.13 Score=52.82 Aligned_cols=125 Identities=16% Similarity=0.223 Sum_probs=69.1
Q ss_pred CcEEEEcccHHHHHHHHHHHH--------CCC--eEE-EEeCCh----------HHHHHHHHcccCCCCee-----ccCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMND--------HGF--TVV-AYNRTT----------AKVDSFLANEAKGTNII-----GAHS 58 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~--------~G~--~V~-v~dr~~----------~~~~~l~~~g~~~~~i~-----~~~s 58 (490)
++|+|+|+|.+|..+++.|.+ .|. +|+ +.|++. ++.....+.......+. ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 689999999999999998877 463 433 446442 22222222111100010 0126
Q ss_pred HHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCCh-HHHHHHHHHHHHcccccc-ccCCCCCcc
Q psy9637 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEY-QDTDRRSKALEAKGLLYV-GCGVSGGED 134 (490)
Q Consensus 59 ~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~-~~~~~~~~~l~~~gi~~l-d~~vsGg~~ 134 (490)
+.++++.. .+|+||-+++. ....+++.. .+..|.-||-.++..- ..-.++.+..+++|..++ .+.+++|.+
T Consensus 83 ~~ell~~~-~~DVvVd~t~~-~~a~~~~~~---al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 83 PEEIVEEI-DADIVVDVTND-KNAHEWHLE---ALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred HHHHHhcC-CCCEEEECCCc-HHHHHHHHH---HHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 77777533 38999988855 345555443 4557888887766311 112233334445666544 555776665
No 361
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=95.19 E-value=0.66 Score=45.64 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=80.6
Q ss_pred CeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc---ccccC
Q psy9637 52 NIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL---YVGCG 128 (490)
Q Consensus 52 ~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~---~ld~~ 128 (490)
+++.++|-.|+++. +|++|+-+|-+...-.+++.+++.+++|.+|.+.-|+++....+..+.+.++.+. |-.+.
T Consensus 128 GvkVtsDD~EAvk~---aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVAD---ADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcC---CCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 45567777788877 9999999999988889999999999999999999999887777776666554332 33344
Q ss_pred CCCCccccccCCccCCC--CCcchHHHHHHHHHhhCCceee
Q psy9637 129 VSGGEDGARYGPSLMPG--GNPAAWPALKPIFQKLNPSFET 167 (490)
Q Consensus 129 vsGg~~~a~~G~~im~G--G~~~a~~~v~~ll~~l~~~~~~ 167 (490)
|-|.+ |+.+..- .++|.++++-++.++.+...+.
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~ 240 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFK 240 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeee
Confidence 44433 4432222 3678899999999999887665
No 362
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.17 E-value=0.15 Score=54.81 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=30.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
++|.|||.|..|..+|..|.+.|++|+++|+++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999999664
No 363
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.16 E-value=0.024 Score=59.04 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=34.9
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|++.++|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 66667899999999999999999999999999999864
No 364
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.16 E-value=0.07 Score=53.24 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=57.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.++|..|.++|..|++++.. +.++.+.+.+ +|+||.++....-+.
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~-------------------t~~l~~~~~~---ADIvI~AvG~p~~i~ 216 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK-------------------TKNLAELTKQ---ADILIVAVGKPKLIT 216 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC-------------------chhHHHHHHh---CCEEEEecCCCCcCC
Confidence 57999995 789999999999999999998642 3456666776 999999997753211
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 217 ---~---~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 217 ---A---DMVKEGAVVIDVGVNR 233 (284)
T ss_pred ---H---HHcCCCCEEEEeeccc
Confidence 1 2467999999998643
No 365
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.16 E-value=0.066 Score=54.75 Aligned_cols=102 Identities=11% Similarity=0.096 Sum_probs=60.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCC-------CeEEEEeCChH--HHHHHHHcccC-----CCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHG-------FTVVAYNRTTA--KVDSFLANEAK-----GTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G-------~~V~v~dr~~~--~~~~l~~~g~~-----~~~i~~~~s~~e~v~~l~~~ 69 (490)
.||+|+|+ |.+|..++..|...+ .+|.++|+++. +.+.....-.. ..++....++.+.++ ++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~---~a 79 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK---DV 79 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC---CC
Confidence 58999999 999999999999854 58999999653 12211100000 012222344434444 49
Q ss_pred cEEEEecCCC----ch-----------HHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 70 RRVMMLVKAG----SA-----------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 70 dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
|+||++.-.. .. ++++...+.++..++.++|-.|| |-+..
T Consensus 80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN--PvD~~ 134 (325)
T cd01336 80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN--PANTN 134 (325)
T ss_pred CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC--cHHHH
Confidence 9999876332 11 23334555566556777777876 44444
No 366
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.16 E-value=0.11 Score=53.07 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=29.4
Q ss_pred EEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHH
Q psy9637 7 IGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLA 45 (490)
Q Consensus 7 IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~ 45 (490)
|||+|+|++|...++.+.+. +.+|+ +.|.+++....+..
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~ 41 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAK 41 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHH
Confidence 69999999999999998754 56666 56777776555543
No 367
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.15 E-value=0.077 Score=52.93 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=57.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGL-AVMGQNLILNMND--HGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
+++.|||- ..+|.++|..|.+ ++..|++++.. +.++.+.+.+ +|+||.++.-+.-
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~-------------------T~~l~~~~k~---ADIvV~AvGkp~~ 216 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG-------------------TRDLAAHTRR---ADIIVAAAGVAHL 216 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC-------------------CCCHHHHHHh---CCEEEEecCCcCc
Confidence 57999995 6789999999998 78999998752 3466777776 9999999987632
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+. ...+++|.+|||.|...
T Consensus 217 i~------~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 217 VT------ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred cC------HHHcCCCCEEEEccccc
Confidence 21 12577999999999754
No 368
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.15 E-value=0.2 Score=47.86 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=35.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
||+-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 36888876 899999999999999999999999988776654
No 369
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.11 E-value=0.083 Score=54.67 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=70.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|-.|..++.+|+..|. +++++|.+.-....+...-.- ...+ .-+....+-+.++ .|++-+...+..-
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~v~~~~~~i 107 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL-NPDVKVTVSVRRL 107 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH-CCCcEEEEEEeec
Confidence 589999999999999999999997 688888874222222211000 0000 0112222222222 2667766665432
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
..+.. .+ .+..-|+|||++-.. ..-....+.+.+.++.|+.+.+.|-
T Consensus 108 ~~~~~-~~---~~~~~DvVvd~~d~~-~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 108 TWSNA-LD---ELRDADVILDGSDNF-DTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred CHHHH-HH---HHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEecC
Confidence 22222 22 234568999998643 3333344667778888887766543
No 370
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.11 E-value=0.076 Score=53.31 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||- ..+|.++|..|.++|..|++++.. +.++++.+.+ +|+|+.++.-..-+.
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~-------------------T~nl~~~~~~---ADIvv~AvGk~~~i~ 225 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR-------------------TPDPESIVRE---ADIVIAAAGQAMMIK 225 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEcCCCcCccC
Confidence 57999995 678999999999999999999642 3456777776 999999996642111
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++|.+|||.|...
T Consensus 226 ------~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 226 ------GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred ------HHHcCCCCEEEEeeccc
Confidence 12477999999999754
No 371
>PRK14851 hypothetical protein; Provisional
Probab=95.06 E-value=0.083 Score=59.14 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=71.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcc-cCCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANE-AKGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g-~~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|+|||+|-+|..++.+|++.|. ++++.|.+.=....+..+- .....+ .-+.-.++.+.++ .|++-|.+.+..
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~i-nP~~~I~~~~~~- 121 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSI-NPFLEITPFPAG- 121 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHh-CCCCeEEEEecC-
Confidence 689999999999999999999997 6777776532222222111 000000 0111223333322 256666666654
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHH-HHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD-RRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~-~~~~~l~~~gi~~ld~~vsG 131 (490)
...+-++++ +..-|+|||+......++. .+.+.+.+.++.++.+++.|
T Consensus 122 i~~~n~~~~---l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 122 INADNMDAF---LDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred CChHHHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 223333333 3456899999875423333 34467778899999887655
No 372
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.02 E-value=0.084 Score=52.58 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=57.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.+++..|.++|..|++++.. +.++++.+.+ +|+||.++.-..-+.
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~-------------------T~nl~~~~~~---ADIvI~AvGk~~~i~ 215 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSR-------------------TADLAGEVGR---ADILVAAIGKAELVK 215 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEecCCcCccC
Confidence 57999995 678999999999999999998642 3456667776 999999997653221
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 216 ---~---~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 216 ---G---AWVKEGAVVIDVGMNR 232 (282)
T ss_pred ---H---HHcCCCCEEEEeecee
Confidence 1 2467999999999653
No 373
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.01 E-value=0.15 Score=53.12 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|-.|..++.+|++.|. +++++|++.-....+..... ....+ .-+....+.+.++ .+++-+...+..
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~- 213 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAAL-NPDVQVEAVQER- 213 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHH-CCCCEEEEEecc-
Confidence 589999999999999999999998 79999987322222221100 00000 0112222223222 145545444432
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
...+.+..+ +..-|+|||++-.. ..-..+.+.+.+.++.|+.+.+.|
T Consensus 214 ~~~~~~~~~---~~~~D~Vv~~~d~~-~~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 214 VTSDNVEAL---LQDVDVVVDGADNF-PTRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred CChHHHHHH---HhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 222222333 33568999997653 333334477788899998887654
No 374
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.99 E-value=0.085 Score=52.70 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=56.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.+++..|.++|..|++++.. +.++.+.+.+ +|+||.++.-...+.
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~-------------------T~~L~~~~~~---ADIvV~AvGkp~~i~ 217 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK-------------------THNLSSITSK---ADIVVAAIGSPLKLT 217 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEccCCCCccC
Confidence 57999996 678999999999999999998742 3456677776 999999997653222
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. ..+++|.+|||.|..
T Consensus 218 ---~---~~vk~GavVIDvGin 233 (288)
T PRK14171 218 ---A---EYFNPESIVIDVGIN 233 (288)
T ss_pred ---H---HHcCCCCEEEEeecc
Confidence 1 246799999999964
No 375
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=94.95 E-value=0.092 Score=53.02 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=59.6
Q ss_pred EEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccC-----CCCeec-cCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 9 LIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAK-----GTNIIG-AHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 9 iIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~-----~~~i~~-~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
|||+|.+|..+|..|+..+. ++.++|++.++++.....-.. ..+++. ..+.+++ +++|+|+++.-.+.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~----~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDC----KDADLVVITAGAPQ 76 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHH----CCCCEEEECCCCCC
Confidence 69999999999999998886 699999988765543321110 111222 2334333 33899998764321
Q ss_pred ---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 81 ---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 81 ---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
.++++...+..+ .+..+||..|| |-+..
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsN--P~d~~ 119 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATN--PVDIL 119 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCC--HHHHH
Confidence 133444555554 56778888886 44443
No 376
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=94.93 E-value=0.078 Score=52.58 Aligned_cols=69 Identities=9% Similarity=0.072 Sum_probs=47.0
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhC------CC-CcEEEEecC
Q psy9637 6 DIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL------KK-PRRVMMLVK 77 (490)
Q Consensus 6 ~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l------~~-~dvIil~vp 77 (490)
+|.|+|. |.+|..++..|.+.|++|.+..|++++... .+...... -..+++.+...+ +. +|.|+++.|
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---~~~~~~~~-d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~ 76 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---PNEKHVKF-DWLDEDTWDNPFSSDDGMEPEISAVYLVAP 76 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---CCCccccc-cCCCHHHHHHHHhcccCcCCceeEEEEeCC
Confidence 4788886 999999999999999999999999875431 11110001 134444444433 44 789988877
Q ss_pred C
Q psy9637 78 A 78 (490)
Q Consensus 78 ~ 78 (490)
.
T Consensus 77 ~ 77 (285)
T TIGR03649 77 P 77 (285)
T ss_pred C
Confidence 5
No 377
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.91 E-value=0.16 Score=54.66 Aligned_cols=114 Identities=12% Similarity=0.170 Sum_probs=74.2
Q ss_pred CcEEEEcc----------cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc-----------------CCCCeeccC
Q psy9637 5 GDIGLIGL----------AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA-----------------KGTNIIGAH 57 (490)
Q Consensus 5 ~~IgiIGl----------G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~-----------------~~~~i~~~~ 57 (490)
.+|+|+|+ ..-...++..|.+.|.+|.+||+--...+.....+. ...++..++
T Consensus 325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (473)
T PLN02353 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVW 404 (473)
T ss_pred CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeC
Confidence 58999998 346778999999999999999986333221101100 001244566
Q ss_pred CHHHHHhhCCCCcEEEEecCCCchHHHH-HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 58 SLEELVKNLKKPRRVMMLVKAGSAVDDF-IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 58 s~~e~v~~l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
++.++++. +|+|++++... ..+.. .+.+.+.+.+..+|+|+-|..... .+++.|+.|+..+
T Consensus 405 ~~~~a~~~---aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~rn~l~~~------~~~~~G~~y~~~G 466 (473)
T PLN02353 405 DAYEATKG---AHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDGRNVLDHE------KLREIGFIVYSIG 466 (473)
T ss_pred CHHHHhcC---CCEEEECCCCh-HhcccCHHHHHHhccCCCEEEECCCCCCHH------HHHhCCcEEEEeC
Confidence 77776665 99999999885 44432 344445455555899999987432 2335588887765
No 378
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.90 E-value=0.088 Score=53.97 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=57.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.++|..|.++|..|+++... +.++.+.+.+ +|+||.++.-..-+.
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~-------------------T~nl~~~~r~---ADIVIsAvGkp~~i~ 289 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------------TKNPEEITRE---ADIIISAVGQPNMVR 289 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC-------------------CCCHHHHHhh---CCEEEEcCCCcCcCC
Confidence 57999995 678999999999999999998642 3466777776 999999997764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 290 ~------d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 290 G------SWIKPGAVVIDVGINP 306 (364)
T ss_pred H------HHcCCCCEEEeccccc
Confidence 1 2467999999998643
No 379
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.86 E-value=0.13 Score=54.10 Aligned_cols=121 Identities=16% Similarity=0.177 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|-.|..++.+|+..|. +++++|.+.-....+..... ....+ .-+....+.+.++ .+++-+...+..
T Consensus 43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~- 120 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI-NPLVNVRLHEFR- 120 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh-CCCcEEEEEecc-
Confidence 589999999999999999999997 68888876433222222110 00000 0111222222222 256666555542
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
...+-+.++ +..=|+|||+.-. +..-..+.+.+...++.|+.+.+.|
T Consensus 121 i~~~~~~~~---~~~~D~Vvd~~d~-~~~r~~ln~~~~~~~~p~v~~~~~g 167 (392)
T PRK07878 121 LDPSNAVEL---FSQYDLILDGTDN-FATRYLVNDAAVLAGKPYVWGSIYR 167 (392)
T ss_pred CChhHHHHH---HhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 222222222 3455899999754 3333334477777888888776654
No 380
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=94.85 E-value=0.098 Score=51.77 Aligned_cols=74 Identities=20% Similarity=0.341 Sum_probs=58.6
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||-+. +|.+|+..|...++.|++++.. +.++.+.+++ +|+++.++--+.-++
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~-------------------T~~l~~~~k~---ADIvv~AvG~p~~i~ 214 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSR-------------------TKDLASITKN---ADIVVVAVGKPHFIK 214 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC-------------------CCCHHHHhhh---CCEEEEecCCccccc
Confidence 5799999764 7999999999999999998753 3466666776 999999997653332
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.+.+++|.+|||.|...
T Consensus 215 ------~d~vk~gavVIDVGinr 231 (283)
T COG0190 215 ------ADMVKPGAVVIDVGINR 231 (283)
T ss_pred ------cccccCCCEEEecCCcc
Confidence 34678999999999754
No 381
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=94.84 E-value=0.2 Score=53.12 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=63.3
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH-HH---HHHH--cccCCCCeeccCCHHHHHhhCCCCcEEEEec--C
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK-VD---SFLA--NEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--K 77 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~-~~---~l~~--~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p 77 (490)
||.|||+|..|.++|+-|.+.|++|+++|..+.. .. .+.+ .|.. +..-.+. +.+. .+|+|+.+- |
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~---~~~g~~~-~~~~---~~d~vv~sp~i~ 73 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSV---LHTGLHL-EDLN---NADLVVKSPGIP 73 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcE---EEecCch-HHhc---cCCEEEECCCCC
Confidence 5899999999999999999999999999975432 11 1221 2221 2111232 3333 489887654 2
Q ss_pred CCch-HHHHH---------Hhhc-ccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 78 AGSA-VDDFI---------DKLV-PLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 78 ~~~~-v~~vl---------~~l~-~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
.+.+ +.... .+++ ..+....|-|-+|++.-.++.-+...+...|..+.
T Consensus 74 ~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~ 132 (433)
T TIGR01087 74 PDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAF 132 (433)
T ss_pred CCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeE
Confidence 2222 22111 1222 22222345566666664444444477777776544
No 382
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.82 E-value=0.067 Score=54.36 Aligned_cols=87 Identities=13% Similarity=0.240 Sum_probs=66.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
+++-|.|.|..|+.+|.+|...|.+|.|++.+|-++-+..=.|.. +.+.+|++.. +|++|+++-+-.
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~------V~~m~~Aa~~---gDifiT~TGnkd---- 276 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFR------VMTMEEAAKT---GDIFVTATGNKD---- 276 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcE------EEEhHHhhhc---CCEEEEccCCcC----
Confidence 467889999999999999999999999999998776554444432 5667788776 899998886642
Q ss_pred HH-HhhcccCCCCCEEEcCCC
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~ 104 (490)
|+ .+-...++.|.|+.+.|-
T Consensus 277 Vi~~eh~~~MkDgaIl~N~GH 297 (420)
T COG0499 277 VIRKEHFEKMKDGAILANAGH 297 (420)
T ss_pred ccCHHHHHhccCCeEEecccc
Confidence 33 233445778889888773
No 383
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.81 E-value=0.095 Score=53.45 Aligned_cols=73 Identities=21% Similarity=0.323 Sum_probs=56.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.++|..|.++|..|+++... +.++.+.+.+ +|+||.++.-+.-+.
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~-------------------T~nl~~~~~~---ADIvIsAvGkp~~v~ 272 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF-------------------TKDPEQITRK---ADIVIAAAGIPNLVR 272 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCC-------------------CCCHHHHHhh---CCEEEEccCCcCccC
Confidence 57999995 678999999999999999988642 3456667776 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. ..+++|.+|||.|..
T Consensus 273 ---~---d~vk~GavVIDVGin 288 (345)
T PLN02897 273 ---G---SWLKPGAVVIDVGTT 288 (345)
T ss_pred ---H---HHcCCCCEEEEcccc
Confidence 1 246799999999964
No 384
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.80 E-value=0.17 Score=49.19 Aligned_cols=124 Identities=13% Similarity=0.147 Sum_probs=70.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcc-cCCCCe--eccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANE-AKGTNI--IGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g-~~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
..+|.|+|+|.+|..++.+|++.|. +++++|.+.=....+..+. .....+ .-++...+.+..+ .|++-+..++..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~i-nP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDI-NPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHH-CCCcEEEEeeee
Confidence 3589999999999999999999997 7888887643222222110 000000 0112223333322 256666555542
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
...+-+..+. ...-++|||+.-.. .....+.+.+.+.++.|+.+.-.|+
T Consensus 90 -i~~~~~~~l~--~~~~D~VvdaiD~~-~~k~~L~~~c~~~~ip~I~s~g~g~ 138 (231)
T cd00755 90 -LTPDNSEDLL--GGDPDFVVDAIDSI-RAKVALIAYCRKRKIPVISSMGAGG 138 (231)
T ss_pred -cCHhHHHHHh--cCCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 2222233332 12358999986543 3444555777888888887754443
No 385
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=94.75 E-value=0.081 Score=54.06 Aligned_cols=102 Identities=11% Similarity=0.097 Sum_probs=58.5
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCC-------eEEEEeCChHH--HHHHH----Hcc-cCCCCeeccCCHHHHHhhCCCCc
Q psy9637 6 DIGLIGL-AVMGQNLILNMNDHGF-------TVVAYNRTTAK--VDSFL----ANE-AKGTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 6 ~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~l~----~~g-~~~~~i~~~~s~~e~v~~l~~~d 70 (490)
||+|||+ |.+|..+|..|...|. ++.++|+++.. .+... ... .....+....+..+ .++.+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~---~~~~aD 77 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAV---AFTDVD 77 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHH---HhCCCC
Confidence 6999999 9999999999998654 59999996542 22111 000 00011222223223 334499
Q ss_pred EEEEecCCCc---h------------HHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 71 RVMMLVKAGS---A------------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 71 vIil~vp~~~---~------------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
+||++--.+. . ++++...+.++-+++.+||-.|| |-+...
T Consensus 78 iVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN--PvDv~t 132 (324)
T TIGR01758 78 VAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN--PANTNA 132 (324)
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC--cHHHHH
Confidence 9998763321 1 23333455555446677777775 455443
No 386
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=94.73 E-value=0.18 Score=48.78 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=66.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-CCCe-eccCCHHHHHhhCCCCcEEEEe-----cC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-GTNI-IGAHSLEELVKNLKKPRRVMML-----VK 77 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-~~~i-~~~~s~~e~v~~l~~~dvIil~-----vp 77 (490)
++|.=||+| |..++..|++.|.+|++.|.+++.++........ +..+ -...+.+|+...=+.-|+|++| ||
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 578889999 8899999999999999999999988766543222 1111 1245666766532457988876 45
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCC
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s 103 (490)
++ +.++..+...++||-+++..+
T Consensus 139 dp---~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 139 DP---ESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred CH---HHHHHHHHHHcCCCcEEEEec
Confidence 43 457777778888887766543
No 387
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.71 E-value=0.043 Score=56.23 Aligned_cols=96 Identities=14% Similarity=0.259 Sum_probs=58.5
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCC---eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGF---TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|..+++|+|||. |..|.-|.+.|.++.| ++..+......-+.+. ... ..+. ..++++.. .+..|++|+++
T Consensus 1 ~~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~~--~~~~-v~~~~~~~--~~~~Dvvf~a~ 74 (336)
T PRK08040 1 MSEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FGG--KSVT-VQDAAEFD--WSQAQLAFFVA 74 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-ECC--cceE-EEeCchhh--ccCCCEEEECC
Confidence 656789999996 9999999999998655 4444432211111111 111 1122 22444432 12389999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
|.+ ...++...+. ..|..|||.|..+
T Consensus 75 p~~-~s~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 75 GRE-ASAAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred CHH-HHHHHHHHHH---HCCCEEEECChHh
Confidence 996 5555555443 4689999998743
No 388
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=94.70 E-value=0.25 Score=52.75 Aligned_cols=110 Identities=17% Similarity=0.261 Sum_probs=63.5
Q ss_pred cEEEEcccHHHHH-HHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CCCc-
Q psy9637 6 DIGLIGLAVMGQN-LILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KAGS- 80 (490)
Q Consensus 6 ~IgiIGlG~MG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~~~- 80 (490)
+|-|||+|..|.+ +|+.|++.|++|+++|.++. ..+.+.+.+.. +..-.+. +.+ +.+|+|+.+- |.+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~---~~~g~~~-~~~---~~~d~vV~spgi~~~~p 73 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIP---IYIGHSA-ENL---DDADVVVVSAAIKDDNP 73 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCE---EeCCCCH-HHC---CCCCEEEECCCCCCCCH
Confidence 4789999999997 99999999999999997653 33344443322 1111222 223 3388888653 3222
Q ss_pred hHHHHH---------Hhhc-ccCC-CCCEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 81 AVDDFI---------DKLV-PLLE-KGDIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 81 ~v~~vl---------~~l~-~~l~-~g~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
.+.... -+++ ..++ ..-|-|-+||+.-.++.-+...+...|.
T Consensus 74 ~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 74 EIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred HHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 222221 1222 2222 2346666667765555555577777775
No 389
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=94.70 E-value=0.95 Score=44.68 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=80.1
Q ss_pred CeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 52 NIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 52 ~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
+++.++|-.|+++. +|++|+-+|-+...-.+++.+++.+++|.+|.+.-|+++....+..+.+.++.+...... -+
T Consensus 126 GvkVtsDD~EAv~~---aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~H-Pa 201 (340)
T TIGR01723 126 GLKVTTDDREAVED---ADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYH-PG 201 (340)
T ss_pred CceEecCcHHHhcC---CCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccC-CC
Confidence 45567777888887 999999999998788899999999999999999999887776666666654433222111 12
Q ss_pred CccccccCC-ccCCC-CCcchHHHHHHHHHhhCCceee
Q psy9637 132 GEDGARYGP-SLMPG-GNPAAWPALKPIFQKLNPSFET 167 (490)
Q Consensus 132 g~~~a~~G~-~im~G-G~~~a~~~v~~ll~~l~~~~~~ 167 (490)
+.++.. |. -+.-| .++|.++++-++.++.+...+.
T Consensus 202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~ay~ 238 (340)
T TIGR01723 202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKAFK 238 (340)
T ss_pred CCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCeee
Confidence 334444 33 22222 3678899999999999887665
No 390
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.65 E-value=0.37 Score=51.32 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=63.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH--HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC---
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK--VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG--- 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~--- 79 (490)
++|.|+|.|..|...|+.|++.|+.|+++|.++.. .+++.+... +..+..-....+.... +|+||.+.--+
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~-gi~~~~g~~~~~~~~~---~d~vv~spgi~~~~ 81 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFD-GLVFYTGRLKDALDNG---FDILALSPGISERQ 81 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccC-CcEEEeCCCCHHHHhC---CCEEEECCCCCCCC
Confidence 58999999999999999999999999999976542 334432100 1111111112233333 79988765221
Q ss_pred chHHHHHH---------hhc-ccCC---CCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 80 SAVDDFID---------KLV-PLLE---KGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 80 ~~v~~vl~---------~l~-~~l~---~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
+.+....+ +++ ..+. ...|-|-+||+.-.++.-+...+...|..
T Consensus 82 p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~ 138 (445)
T PRK04308 82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD 138 (445)
T ss_pred HHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 12222211 121 2221 12355666666544444444677766654
No 391
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.64 E-value=0.35 Score=47.43 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=68.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
..++-|+|.|..+.++++-+...||+|+++|..++........+ ........+.+....+...+.|+++.-+. ..|
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~t~vvi~th~h-~~D 175 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDG---VATLVTDEPEAEVAEAPPGSYFLVLTHDH-ALD 175 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCC---ceEEecCCHHHHHhcCCCCcEEEEEeCCh-HHH
Confidence 46899999999999999999999999999997766221111001 01123455677766565567888887553 444
Q ss_pred -HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 84 -DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 84 -~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
.++..+++. +...+|=+=.| -....++.+.+.+.|+
T Consensus 176 ~~~L~~aL~~--~~~~YIG~lGS-r~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 176 LELCHAALRR--GDFAYFGLIGS-KTKRARFEHRLRARGV 212 (246)
T ss_pred HHHHHHHHhC--CCCcEEEEeCC-HHHHHHHHHHHHhcCC
Confidence 444555422 22223322221 2445566677777665
No 392
>PRK06847 hypothetical protein; Provisional
Probab=94.64 E-value=0.039 Score=56.95 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=35.1
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|..+++|.|||.|..|..+|..|.+.|++|++++++++
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 77778999999999999999999999999999998754
No 393
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.63 E-value=0.12 Score=51.51 Aligned_cols=74 Identities=16% Similarity=0.352 Sum_probs=56.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC----CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH----GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+++.|||- ..+|.++|..|.++ +..|++++.. +.++++.+.+ +|+||.++.-+
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~-------------------T~~l~~~~~~---ADIvV~AvG~p 211 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ-------------------SENLTEILKT---ADIIIAAIGVP 211 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEccCCc
Confidence 57999995 67899999999988 7899987642 3466677776 99999999775
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.-+. . ..+++|.+|||.|...
T Consensus 212 ~~i~---~---~~ik~GavVIDvGin~ 232 (287)
T PRK14181 212 LFIK---E---EMIAEKAVIVDVGTSR 232 (287)
T ss_pred CccC---H---HHcCCCCEEEEecccc
Confidence 3221 1 2467999999999653
No 394
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=94.63 E-value=0.1 Score=53.73 Aligned_cols=94 Identities=12% Similarity=0.177 Sum_probs=55.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCC-CeEEEE-eCChHHHHHHHHcc-------cCC--CCeecc-CCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHG-FTVVAY-NRTTAKVDSFLANE-------AKG--TNIIGA-HSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G-~~V~v~-dr~~~~~~~l~~~g-------~~~--~~i~~~-~s~~e~v~~l~~~dv 71 (490)
+||+|+|. |.||..+++.|.++. ++|... +.+++.-+.+.+.. ... ..+... .+++ .. +++|+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~Dv 76 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPV-AS---KDVDI 76 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHH-Hh---ccCCE
Confidence 48999995 999999999998876 577655 55433222221110 000 001111 1222 22 34899
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
|++++|.+ ...++...+ ...|..|||.|..+
T Consensus 77 Vf~a~p~~-~s~~~~~~~---~~~G~~VIDlsg~f 107 (341)
T TIGR00978 77 VFSALPSE-VAEEVEPKL---AEAGKPVFSNASNH 107 (341)
T ss_pred EEEeCCHH-HHHHHHHHH---HHCCCEEEECChhh
Confidence 99999996 444454433 34688899988753
No 395
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.61 E-value=0.23 Score=49.04 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=37.0
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
|..+++|-|.|. |.+|..+++.|+++|++|++.+|++++.+.+.+
T Consensus 1 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 1 MSSMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred CCCCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 433456888875 999999999999999999999999887766543
No 396
>PRK07454 short chain dehydrogenase; Provisional
Probab=94.53 E-value=0.2 Score=48.04 Aligned_cols=42 Identities=12% Similarity=0.258 Sum_probs=35.2
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
.++++-|.|. |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALA 47 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3456788874 99999999999999999999999987766544
No 397
>PRK14031 glutamate dehydrogenase; Provisional
Probab=94.52 E-value=0.19 Score=53.33 Aligned_cols=113 Identities=16% Similarity=0.084 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEE-Ee----------CChHHHHH---HHHc-ccC----CC--CeeccCCHHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVA-YN----------RTTAKVDS---FLAN-EAK----GT--NIIGAHSLEELV 63 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v-~d----------r~~~~~~~---l~~~-g~~----~~--~i~~~~s~~e~v 63 (490)
++|.|.|.|++|...|+.|.+.|..|++ .| .+.+++.. +... ... .. +.. ..+.+++.
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~-~i~~d~~~ 307 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCK-YVEGARPW 307 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCE-EcCCcccc
Confidence 6899999999999999999999999986 56 55555431 1111 000 00 011 11333332
Q ss_pred hhCCCCcEEEEecCCCchHHHHHHhhcccCCCC-CEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKG-DIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g-~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
. ..||+++-|.-......+....|.. ++ .+|+.++|. | .+.+..+.+.++|+.++
T Consensus 308 ~--~~cDIliPaAl~n~I~~~na~~l~a---~g~~~V~EgAN~-P-~t~eA~~~L~~rgI~~~ 363 (444)
T PRK14031 308 G--EKGDIALPSATQNELNGDDARQLVA---NGVIAVSEGANM-P-STPEAIKVFQDAKILYA 363 (444)
T ss_pred c--CCCcEEeecccccccCHHHHHHHHh---cCCeEEECCCCC-C-CCHHHHHHHHHCCcEEe
Confidence 2 1388888666554444444454432 22 378888887 3 45556678888998775
No 398
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.50 E-value=0.1 Score=53.81 Aligned_cols=91 Identities=14% Similarity=0.311 Sum_probs=56.4
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCe---EEEE--eCChHHHHHHHHcccCCCCeecc-CCHHHHHhhCCCCcEEEEe
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHGFT---VVAY--NRTTAKVDSFLANEAKGTNIIGA-HSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G~~---V~v~--dr~~~~~~~l~~~g~~~~~i~~~-~s~~e~v~~l~~~dvIil~ 75 (490)
..+||+|||. |..|.-+.+.|.+.+|+ +... .|+..+.-.+ .+ . .+... .+.+++ +. +|+||++
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~-~--~~~v~~~~~~~~-~~---~D~vf~a 76 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EG-R--DYTVEELTEDSF-DG---VDIALFS 76 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cC-c--eeEEEeCCHHHH-cC---CCEEEEC
Confidence 3478999995 99999999999998884 2222 3332221111 11 1 12111 123333 43 8999999
Q ss_pred cCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 76 VKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+|.+ ...++...+. ..|..|||.|.-+
T Consensus 77 ~p~~-~s~~~~~~~~---~~g~~VIDlS~~f 103 (344)
T PLN02383 77 AGGS-ISKKFGPIAV---DKGAVVVDNSSAF 103 (344)
T ss_pred CCcH-HHHHHHHHHH---hCCCEEEECCchh
Confidence 9996 5555555432 4689999999743
No 399
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.48 E-value=0.41 Score=51.08 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=30.4
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
||.|||+|..|.+.|+.|.+.|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999997643
No 400
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.44 E-value=0.17 Score=55.28 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=35.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
+.|.|.|. |.+|..+++.|++.|++|++++|+.++.+.+.+
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 45778885 999999999999999999999999988776543
No 401
>PRK07877 hypothetical protein; Provisional
Probab=94.43 E-value=0.12 Score=58.04 Aligned_cols=124 Identities=15% Similarity=0.200 Sum_probs=74.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccCCCCe--eccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAKGTNI--IGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
..+|+|||+| +|+..|..|++.|. ++++.|.+.=....+.........+ .-+...++.+..+ .+++-|.+++..
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~i-np~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAEL-DPYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3689999999 89999999999995 7888876532221221110000000 0122233333333 267777777775
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCcc
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGED 134 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~ 134 (490)
...+-+++++ ..-|+|||+.-.. ..-..+.+.+.++++.++.+...+|..
T Consensus 185 -i~~~n~~~~l---~~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~~g~~ 234 (722)
T PRK07877 185 -LTEDNVDAFL---DGLDVVVEECDSL-DVKVLLREAARARRIPVLMATSDRGLL 234 (722)
T ss_pred -CCHHHHHHHh---cCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 3344455554 3459999998754 333344477788899888776555543
No 402
>PRK10537 voltage-gated potassium channel; Provisional
Probab=94.36 E-value=0.42 Score=50.14 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=65.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHh--hCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVK--NLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~--~l~~~dvIil~vp~~~~v 82 (490)
..|-|+|.|.+|..+++.|.+.|++|++.|.++ .+...+.+.. -+..-.+-.+..+ .+++++.|+++.+++...
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~--vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~N 316 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDAD--LIPGDSSDSAVLKKAGAARARAILALRDNDADN 316 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCc--EEEeCCCCHHHHHhcCcccCCEEEEcCCChHHH
Confidence 458899999999999999999999999998763 2333322221 1222222233332 466799999988886433
Q ss_pred HHHHHhhcccCCC-CCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 83 DDFIDKLVPLLEK-GDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 83 ~~vl~~l~~~l~~-g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
..++.. ...+.| ..+|+-..+. +..+.+++.|...+
T Consensus 317 l~ivL~-ar~l~p~~kIIa~v~~~------~~~~~L~~~GaD~V 353 (393)
T PRK10537 317 AFVVLA-AKEMSSDVKTVAAVNDS------KNLEKIKRVHPDMI 353 (393)
T ss_pred HHHHHH-HHHhCCCCcEEEEECCH------HHHHHHHhcCCCEE
Confidence 333322 233444 4566655431 22345555666543
No 403
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.33 E-value=0.14 Score=53.26 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=69.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|.+|..++.+|+..|. +++++|.+.=....+..+-. ....+ .-+....+.+..+ .+++-|...+..
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~- 119 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI-QPDIRVNALRER- 119 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH-CCCCeeEEeeee-
Confidence 589999999999999999999996 89999987432222221100 00000 0122222333322 255666666542
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVS 130 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vs 130 (490)
...+-+.++ ++.-|+|||++-. +..-..+.+.+...++.|+.+.+.
T Consensus 120 i~~~~~~~~---~~~~DlVid~~Dn-~~~r~~in~~~~~~~iP~v~~~~~ 165 (370)
T PRK05600 120 LTAENAVEL---LNGVDLVLDGSDS-FATKFLVADAAEITGTPLVWGTVL 165 (370)
T ss_pred cCHHHHHHH---HhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEEe
Confidence 222223333 3456899999865 333333346677778888777654
No 404
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=94.31 E-value=0.29 Score=52.06 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=50.0
Q ss_pred CcEEEEcccHHHHH--HHHHHHHC-----CCeEEEEeCChHHHHHHHH-------cccCCCCeeccCCHHHHHhhCCCCc
Q psy9637 5 GDIGLIGLAVMGQN--LILNMNDH-----GFTVVAYNRTTAKVDSFLA-------NEAKGTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 5 ~~IgiIGlG~MG~~--lA~~L~~~-----G~~V~v~dr~~~~~~~l~~-------~g~~~~~i~~~~s~~e~v~~l~~~d 70 (490)
|||+|||.|.. .. +...|+.. +-+|+.+|.++++.+.... ......++..++|..++++. +|
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g---AD 76 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD---AD 76 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC---CC
Confidence 58999999985 32 34444433 4689999999988765322 11113467788999998887 99
Q ss_pred EEEEecCCC
Q psy9637 71 RVMMLVKAG 79 (490)
Q Consensus 71 vIil~vp~~ 79 (490)
+||+.+-.+
T Consensus 77 fVi~~irvG 85 (437)
T cd05298 77 FVFAQIRVG 85 (437)
T ss_pred EEEEEeeeC
Confidence 999998554
No 405
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.31 E-value=0.31 Score=51.37 Aligned_cols=110 Identities=11% Similarity=0.103 Sum_probs=71.9
Q ss_pred CCcEEEEcccHHHHHH-HHHHHH-----CCCeEEEEeCChHHHHH-------HHHcccCCCCeeccCCHHHHHhhCCCCc
Q psy9637 4 KGDIGLIGLAVMGQNL-ILNMND-----HGFTVVAYNRTTAKVDS-------FLANEAKGTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~l-A~~L~~-----~G~~V~v~dr~~~~~~~-------l~~~g~~~~~i~~~~s~~e~v~~l~~~d 70 (490)
+.||+|||.|....+. ...+.. .+.++..||.++++.+. +.++.....++..++|.+++++. +|
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~g---Ad 79 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEG---AD 79 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcC---CC
Confidence 4689999999988663 222222 25689999999988763 22222224567889999999887 99
Q ss_pred EEEEecCCCc-----------------------------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHH
Q psy9637 71 RVMMLVKAGS-----------------------------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSK 115 (490)
Q Consensus 71 vIil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~ 115 (490)
+|+.++-.+. .+-++++.+.. +.|+..+++-+|-....|+...+
T Consensus 80 fVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~-~~P~Aw~lNytNP~~~vTeAv~r 158 (442)
T COG1486 80 FVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEK-VCPNAWMLNYTNPAAIVTEAVRR 158 (442)
T ss_pred EEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHH-hCCCceEEeccChHHHHHHHHHH
Confidence 9999984432 11122233333 45889999999866665555544
Q ss_pred HH
Q psy9637 116 AL 117 (490)
Q Consensus 116 ~l 117 (490)
..
T Consensus 159 ~~ 160 (442)
T COG1486 159 LY 160 (442)
T ss_pred hC
Confidence 33
No 406
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.30 E-value=0.15 Score=49.95 Aligned_cols=113 Identities=16% Similarity=0.268 Sum_probs=68.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEE--------EeCChHHHHHHHH---cccCCCCeeccC----------CH-HHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVA--------YNRTTAKVDSFLA---NEAKGTNIIGAH----------SL-EEL 62 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v--------~dr~~~~~~~l~~---~g~~~~~i~~~~----------s~-~e~ 62 (490)
+++.|-|.|.+|...|+.|.+.|..|++ ||.+.-.++.+.+ .... ++.... +. +++
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~i 110 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGS--RVDDYPLESPDGAEYIPNDDEI 110 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSS--HSTTGTHTCSSTSEEECHHCHG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCC--cccccccccccceeEecccccc
Confidence 6899999999999999999999988765 4665444554443 2111 011111 12 144
Q ss_pred HhhCCCCcEEEEecCCCchHHHHHH-hhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 63 VKNLKKPRRVMMLVKAGSAVDDFID-KLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 63 v~~l~~~dvIil~vp~~~~v~~vl~-~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
... ++|+++-|--.+....+.+. .+.+ .=++|+...|.... .+..+.|.++|+.++.
T Consensus 111 l~~--~~DiliP~A~~~~I~~~~~~~~i~~---~akiIvegAN~p~t--~~a~~~L~~rGI~viP 168 (244)
T PF00208_consen 111 LSV--DCDILIPCALGNVINEDNAPSLIKS---GAKIIVEGANGPLT--PEADEILRERGILVIP 168 (244)
T ss_dssp GTS--SSSEEEEESSSTSBSCHHHCHCHHT---T-SEEEESSSSSBS--HHHHHHHHHTT-EEE-
T ss_pred ccc--cccEEEEcCCCCeeCHHHHHHHHhc---cCcEEEeCcchhcc--HHHHHHHHHCCCEEEc
Confidence 432 48999988655444444444 3321 24789999987543 3333588999987753
No 407
>PRK07060 short chain dehydrogenase; Provisional
Probab=94.26 E-value=0.16 Score=48.81 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=35.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
+++.|.|. |.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 47889987 899999999999999999999999887766543
No 408
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.25 E-value=0.17 Score=50.85 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=55.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC----CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH----GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
++|.|||- ..+|.++|..|.++ +..|+++... +.++++.+.+ +|+||.++.-+
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~-------------------T~~l~~~~~~---ADIvVsAvGkp 219 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR-------------------SKNLARHCQR---ADILIVAAGVP 219 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC-------------------CcCHHHHHhh---CCEEEEecCCc
Confidence 57999995 77899999999988 6889987542 3456667776 99999999665
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.-+. ...+++|.+|||.|...
T Consensus 220 ~~i~------~~~ik~gavVIDvGin~ 240 (297)
T PRK14168 220 NLVK------PEWIKPGATVIDVGVNR 240 (297)
T ss_pred CccC------HHHcCCCCEEEecCCCc
Confidence 3221 12467999999999643
No 409
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.25 E-value=0.23 Score=48.03 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=35.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
.++|-|.| .|.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAA 45 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 35788898 699999999999999999999999988776654
No 410
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.21 E-value=0.061 Score=55.29 Aligned_cols=89 Identities=12% Similarity=0.262 Sum_probs=56.3
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEE---EEeCChHHHHHHHHcccCCCCeecc-CCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVV---AYNRTTAKVDSFLANEAKGTNIIGA-HSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~---v~dr~~~~~~~l~~~g~~~~~i~~~-~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
||+||| .|..|..|.+.|.+++|++. .+.++...-+.+...+ ..+... .+..++ . ..|+||+|+|.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~---~~~~~~~~~~~~~-~---~~D~v~~a~g~~- 72 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKG---KELEVNEAKIESF-E---GIDIALFSAGGS- 72 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCC---eeEEEEeCChHHh-c---CCCEEEECCCHH-
Confidence 589999 69999999999999998743 3444433222222111 112111 122233 3 489999999996
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
...+....+ +..|..|||.|..
T Consensus 73 ~s~~~a~~~---~~~G~~VID~ss~ 94 (339)
T TIGR01296 73 VSKEFAPKA---AKCGAIVIDNTSA 94 (339)
T ss_pred HHHHHHHHH---HHCCCEEEECCHH
Confidence 555555544 3467899999874
No 411
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.18 E-value=0.058 Score=56.57 Aligned_cols=33 Identities=21% Similarity=0.540 Sum_probs=31.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.+|.|||.|.+|...|..|++.|++|+++|+++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999875
No 412
>PRK07236 hypothetical protein; Provisional
Probab=94.18 E-value=0.062 Score=55.94 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=31.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
++|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 5899999999999999999999999999998864
No 413
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.17 E-value=0.17 Score=51.11 Aligned_cols=108 Identities=18% Similarity=0.128 Sum_probs=71.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch---
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA--- 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~--- 81 (490)
.+|+|||--.==..++..|.++|++|.++.-+.+.. ...| +..+++.++++.. +|+|++.+|....
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~g-----~~~~~~~~~~~~~---ad~ii~~~p~~~~~~~ 71 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFTG-----ATKSSSLEEALSD---VDVIILPVPGTNDEGN 71 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccCC-----ceeeccHHHHhcc---CCEEEECCccccCCce
Confidence 579999988888999999999999999876543211 1112 2346677777766 8999999886311
Q ss_pred HHHH-------H-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 82 VDDF-------I-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 82 v~~v-------l-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
+... + .+++..++++.+++ .|...+... +.+.++|+..++.+
T Consensus 72 i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~----~~~~~~gi~~~~~~ 121 (296)
T PRK08306 72 VDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK----ELAKETNRKLVELF 121 (296)
T ss_pred eeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH----HHHHHCCCeEEEEe
Confidence 1111 1 34566788898555 455554422 44668898877654
No 414
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.14 E-value=0.19 Score=47.94 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=34.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|-|.|. |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~ 46 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALA 46 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHH
Confidence 57889985 99999999999999999999999987765543
No 415
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.11 E-value=0.18 Score=50.53 Aligned_cols=74 Identities=15% Similarity=0.283 Sum_probs=56.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC----CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH----GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+++.|||- ..+|.++|..|.++ +..|+++... +.++.+.+.+ +|+||.++.-+
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~-------------------T~nl~~~~~~---ADIvIsAvGkp 215 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR-------------------SKNLKKECLE---ADIIIAALGQP 215 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC-------------------CCCHHHHHhh---CCEEEEccCCc
Confidence 57999995 67899999999988 5788887642 3466677776 99999999876
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.-+. ...+++|.+|||.|...
T Consensus 216 ~~i~------~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 216 EFVK------ADMVKEGAVVIDVGTTR 236 (293)
T ss_pred CccC------HHHcCCCCEEEEecCcc
Confidence 4322 13467999999999753
No 416
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.08 E-value=0.14 Score=51.80 Aligned_cols=81 Identities=10% Similarity=0.103 Sum_probs=53.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.||+|+|. |..|.-|.+.|.++-+ +-+...+.+.. + ...+.+++.++ .|++|+++|++ ...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~-~el~~l~s~~~--~-----------~~~~~~~~~~~---~D~vFlalp~~-~s~ 63 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD-IELLSIAPDRR--K-----------DAAERAKLLNA---ADVAILCLPDD-AAR 63 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC-eEEEEEecccc--c-----------CcCCHhHhhcC---CCEEEECCCHH-HHH
Confidence 47999985 9999999999998743 33322221110 1 02244555555 89999999997 555
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+....+. ..|..|||.|..+
T Consensus 64 ~~~~~~~---~~g~~VIDlSadf 83 (310)
T TIGR01851 64 EAVSLVD---NPNTCIIDASTAY 83 (310)
T ss_pred HHHHHHH---hCCCEEEECChHH
Confidence 5555442 4688999999743
No 417
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.08 E-value=0.085 Score=53.48 Aligned_cols=81 Identities=11% Similarity=0.171 Sum_probs=52.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
|+||+||| .|..|..+.+.|.++.+ ++.....+..+ . + .+.++..++ +|++|+++|.+ .
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------~---~---~~~~~~~~~---~DvvFlalp~~-~ 62 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------D---A---AARRELLNA---ADVAILCLPDD-A 62 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------c---c---cCchhhhcC---CCEEEECCCHH-H
Confidence 47899999 69999999999998763 33222221110 0 1 122233344 89999999996 5
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
..+....+. ..|..|||.|.-+
T Consensus 63 s~~~~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 63 AREAVALID---NPATRVIDASTAH 84 (313)
T ss_pred HHHHHHHHH---hCCCEEEECChhh
Confidence 555555543 4688999999743
No 418
>PRK06182 short chain dehydrogenase; Validated
Probab=94.04 E-value=0.41 Score=46.99 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=35.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
+++|-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~ 44 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA 44 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 357888885 89999999999999999999999988766543
No 419
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.01 E-value=0.15 Score=49.81 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=29.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-----------CeEEEEeCCh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-----------FTVVAYNRTT 37 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-----------~~V~v~dr~~ 37 (490)
..+|.|||+|-.|..++.+|++.| .+++++|.+.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 468999999999999999999874 2889998763
No 420
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.97 E-value=0.27 Score=48.80 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=66.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|-+|...|.+|++.| -+++++|.+.-....+..+.. ....+ .-++-..+-+..+ .|++-+..++..
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I-NP~~~V~~i~~~- 108 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI-NPECRVTVVDDF- 108 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH-CCCcEEEEEecc-
Confidence 58999999999999999999999 589999876433222221100 00000 0011122222222 255555555442
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
...+-++.+.. ..-|+|||+.-.. .....+.+.+.+.++.|+.++
T Consensus 109 i~~e~~~~ll~--~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 109 ITPDNVAEYMS--AGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred cChhhHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 22222333331 2358999986532 334445577788888877653
No 421
>PRK07411 hypothetical protein; Validated
Probab=93.89 E-value=0.23 Score=52.15 Aligned_cols=122 Identities=12% Similarity=0.079 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|-+|..++.+|+..|. +++++|.+.=....+..+-. ....+ .-+....+-+.++ .+++-+...+..
T Consensus 39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~-np~v~v~~~~~~- 116 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEI-NPYCQVDLYETR- 116 (390)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHH-CCCCeEEEEecc-
Confidence 589999999999999999999997 68888876433222221100 00000 0122223333222 256666666542
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
...+-..+ .+..-|+|||+.-.. ..-..+.+.+...++.++.+.+.|-
T Consensus 117 ~~~~~~~~---~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 117 LSSENALD---ILAPYDVVVDGTDNF-PTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred cCHHhHHH---HHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEccC
Confidence 22222222 234568999997643 3333333666777888887766653
No 422
>PRK06101 short chain dehydrogenase; Provisional
Probab=93.89 E-value=0.26 Score=47.43 Aligned_cols=41 Identities=22% Similarity=0.467 Sum_probs=35.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN 46 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 46 (490)
++-|.| .|.+|..+++.|+++|++|++.+|++++.+.+.+.
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 566776 69999999999999999999999999887776553
No 423
>PRK08309 short chain dehydrogenase; Provisional
Probab=93.85 E-value=0.45 Score=44.20 Aligned_cols=101 Identities=14% Similarity=0.038 Sum_probs=58.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|++-|+|...||..++..|++.|++|.+.+|++++.+.+...... ... ...+-.-+.+...++.
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~-------------~~~---i~~~~~Dv~d~~sv~~ 64 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTT-------------PES---ITPLPLDYHDDDALKL 64 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhc-------------CCc---EEEEEccCCCHHHHHH
Confidence 468888876788889999999999999999998876665431100 000 1122223344445556
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++++......+-++++..-- ..-.....+.+++.|+.
T Consensus 65 ~i~~~l~~~g~id~lv~~vh--~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 65 AIKSTIEKNGPFDLAVAWIH--SSAKDALSVVCRELDGS 101 (177)
T ss_pred HHHHHHHHcCCCeEEEEecc--ccchhhHHHHHHHHccC
Confidence 66555443333345554432 23344445555555554
No 424
>PLN00016 RNA-binding protein; Provisional
Probab=93.85 E-value=0.23 Score=51.67 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=32.9
Q ss_pred CCcEEEE----c-ccHHHHHHHHHHHHCCCeEEEEeCChHHH
Q psy9637 4 KGDIGLI----G-LAVMGQNLILNMNDHGFTVVAYNRTTAKV 40 (490)
Q Consensus 4 ~~~IgiI----G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~ 40 (490)
+++|.|+ | .|.+|..++..|+++||+|++.+|++...
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~ 93 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPS 93 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcch
Confidence 4689999 6 69999999999999999999999987653
No 425
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=93.75 E-value=0.49 Score=46.44 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=28.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCC-CeEE-EEeCChH
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHG-FTVV-AYNRTTA 38 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G-~~V~-v~dr~~~ 38 (490)
+|||+|+|. |+||+.+.+.+.+.. +++. .++|.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~ 39 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGS 39 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 579999998 999999999998765 4544 5787754
No 426
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=93.74 E-value=0.59 Score=49.57 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=50.7
Q ss_pred CcEEEEcccHH-HHHHHHHHHHC-----CCeEEEEeCChHHHHHHH-------HcccCCCCeeccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVM-GQNLILNMNDH-----GFTVVAYNRTTAKVDSFL-------ANEAKGTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~M-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~-------~~g~~~~~i~~~~s~~e~v~~l~~~dv 71 (490)
|||+|||.|.. ...+...|+.. +-+|+.+|.++++.+... +......++..++|.++++.. +|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g---ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID---ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CCE
Confidence 58999999984 22345555543 468999999998876532 221113467788999998887 999
Q ss_pred EEEecCCC
Q psy9637 72 VMMLVKAG 79 (490)
Q Consensus 72 Iil~vp~~ 79 (490)
||..+-.+
T Consensus 78 Vi~~irvG 85 (425)
T cd05197 78 VINQFRVG 85 (425)
T ss_pred EEEeeecC
Confidence 99998554
No 427
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.70 E-value=0.2 Score=56.04 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=31.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.++|.|||.|..|...|..|++.||+|++|++.+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 3689999999999999999999999999999876
No 428
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.70 E-value=0.24 Score=49.75 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=55.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC----CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH----GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+++.|||- ..+|.++|..|.++ +..|+++... +.++++.+.+ +|+||.++.-+
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~-------------------T~~l~~~~~~---ADIvIsAvGkp 215 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR-------------------TDDLAAKTRR---ADIVVAAAGVP 215 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEccCCc
Confidence 57999995 67899999999987 7899987642 3456667776 99999998665
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.-+. . ..+++|.+|||.|...
T Consensus 216 ~~i~---~---~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 216 ELID---G---SMLSEGATVIDVGINR 236 (297)
T ss_pred CccC---H---HHcCCCCEEEEccccc
Confidence 3221 1 2467999999999643
No 429
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.69 E-value=0.13 Score=52.11 Aligned_cols=121 Identities=16% Similarity=0.216 Sum_probs=68.9
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
||.|||+|.+|..++++|+..|. +++++|.+.-....+..+.. ....+ .-+....+.+.++ .+++-+...... .
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~l-Np~v~V~~~~~~-i 78 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSF-NPNVKIVAYHAN-I 78 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHH-CCCCeEEEEecc-C
Confidence 58999999999999999999997 68899877544443322210 00000 0012222333332 145555544332 1
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
.+.. .....++.=++||++.-. +..-....+.+...++.|+++++.|
T Consensus 79 ~~~~--~~~~f~~~~DvVv~a~Dn-~~ar~~in~~c~~~~ip~I~~gt~G 125 (312)
T cd01489 79 KDPD--FNVEFFKQFDLVFNALDN-LAARRHVNKMCLAADVPLIESGTTG 125 (312)
T ss_pred CCcc--chHHHHhcCCEEEECCCC-HHHHHHHHHHHHHCCCCEEEEecCc
Confidence 1110 011234456899988753 3333334477788899999988765
No 430
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.63 E-value=0.11 Score=40.21 Aligned_cols=30 Identities=17% Similarity=0.462 Sum_probs=27.2
Q ss_pred EEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 9 LIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 9 iIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|||.|.-|...|..|.++|++|+++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998854
No 431
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=93.59 E-value=0.11 Score=53.13 Aligned_cols=37 Identities=16% Similarity=0.362 Sum_probs=33.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVD 41 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~ 41 (490)
++|||||-|..|.-|+..-.+-|++|.+.|.+++.-.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA 38 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPA 38 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCch
Confidence 5899999999999999999999999999998876543
No 432
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=93.58 E-value=0.64 Score=48.72 Aligned_cols=38 Identities=18% Similarity=0.396 Sum_probs=33.3
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHH
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKV 40 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~ 40 (490)
..++|.|+|. |.+|..+++.|+++|++|++++|++.+.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~ 97 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGI 97 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhc
Confidence 3468999985 9999999999999999999999987643
No 433
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=93.56 E-value=0.17 Score=51.87 Aligned_cols=40 Identities=13% Similarity=0.344 Sum_probs=33.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCeEEEEeCChHHHHHH
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDH-GFTVVAYNRTTAKVDSF 43 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~-G~~V~v~dr~~~~~~~l 43 (490)
||+|-|.|. |.+|+.++..|+++ ||+|++.||++++...+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 368999996 99999999999986 79999999987654443
No 434
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=93.52 E-value=0.48 Score=45.80 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=34.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
|+|-|+|. |..|..++..|+++|++|++.+|++++.+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46888984 99999999999999999999999988766554
No 435
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=93.46 E-value=0.47 Score=46.17 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=34.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
|++-|.|. |.+|..+|+.|+++|++|++.+|++++.++..
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 41 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKAL 41 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 46888875 88999999999999999999999988766554
No 436
>KOG3007|consensus
Probab=93.44 E-value=0.25 Score=48.36 Aligned_cols=112 Identities=15% Similarity=0.069 Sum_probs=76.4
Q ss_pred EEEEcccHHHHHHHHHHHHCC---CeEEEEeCChHHHHHHHHcccC---C--CCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 7 IGLIGLAVMGQNLILNMNDHG---FTVVAYNRTTAKVDSFLANEAK---G--TNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 7 IgiIGlG~MG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~g~~---~--~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
..++|.|.....+-.-..+.- .+|.+|||+++..+.+.+...+ . ..+..+.++++++.. +|+|+.++++
T Consensus 141 L~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~---sDIIs~atls 217 (333)
T KOG3007|consen 141 LTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSN---SDIISGATLS 217 (333)
T ss_pred EEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhccccc---CceEEecccc
Confidence 678999999887665544432 4799999999999888763221 1 123457788888876 9999999988
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
..+. + ....++||.. ||.=.++-++..+.-+.+-+.+..|+|.
T Consensus 218 tePi---l--fgewlkpgth-IdlVGsf~p~mhEcDdelIq~a~vfVDs 260 (333)
T KOG3007|consen 218 TEPI---L--FGEWLKPGTH-IDLVGSFKPVMHECDDELIQSACVFVDS 260 (333)
T ss_pred CCce---e--eeeeecCCce-EeeeccCCchHHHHhHHHhhhheEEEec
Confidence 6432 1 1245777854 4543344455566667777788889887
No 437
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=93.43 E-value=0.21 Score=48.60 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=66.9
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
||.|||+|..|..++++|+..|+ +++++|.+.=....+..+.. ....+ .-+....+.+..+ .|++-+......-.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~-np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDR-NPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHH-CCCCEEEEEeccCC
Confidence 58999999999999999999997 68888876433333322110 00000 0011222333222 14555544443210
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
-.+... ...++.=++||++.-.. ..-....+.+...++.|+++++.|
T Consensus 80 ~~~~~~--~~f~~~~DvVi~a~Dn~-~aR~~ln~~c~~~~iplI~~g~~G 126 (234)
T cd01484 80 PEQDFN--DTFFEQFHIIVNALDNI-IARRYVNGMLIFLIVPLIESGTEG 126 (234)
T ss_pred hhhhch--HHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcccC
Confidence 001110 12344568999986643 332333377777889999887654
No 438
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.43 E-value=0.42 Score=45.84 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=34.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|-|+|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 56888885 99999999999999999999999988766554
No 439
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.42 E-value=0.55 Score=44.78 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=34.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|-|+|. |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 46888874 99999999999999999999999987766554
No 440
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=93.40 E-value=0.16 Score=52.84 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=32.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK 39 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~ 39 (490)
|++|||||.|..|..|+....+.|++|+++|.+++.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 358999999999999999999999999999988654
No 441
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.39 E-value=0.23 Score=49.37 Aligned_cols=99 Identities=12% Similarity=0.161 Sum_probs=52.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHc----ccCCCCee-ccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLAN----EAKGTNII-GAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~----g~~~~~i~-~~~s~~e~v~~l~~~dvIil~vp 77 (490)
.||.|||.|.+-...-.-.... |..|..+|++++..+...+. ..-..++. .+.+..++..++...|+|+++--
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 4899999998865433222233 46788999999987654321 11122332 23444445445666899999876
Q ss_pred CC---chHHHHHHhhcccCCCCCEEEcCC
Q psy9637 78 AG---SAVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 78 ~~---~~v~~vl~~l~~~l~~g~iiId~s 103 (490)
.+ ..-.++++.+...+++|..|+--+
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 64 245678899999999999887653
No 442
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.35 E-value=0.13 Score=51.56 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=46.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+|.|.| .|.+|..++..|+++|++|++.+|+++....+...+.. -+. -..+.+++.+.++.+|+||-+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVE--IVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCce--EEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4789998 59999999999999999999999987654333211111 000 12334444444445788777653
No 443
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.34 E-value=0.2 Score=51.51 Aligned_cols=96 Identities=15% Similarity=0.267 Sum_probs=58.5
Q ss_pred CC-CCCcEEEEcc-cHHHHHHHHHHHH-CCCe---EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 1 MA-AKGDIGLIGL-AVMGQNLILNMND-HGFT---VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 1 M~-~~~~IgiIGl-G~MG~~lA~~L~~-~G~~---V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
|+ ..++|||||. |..|..|.+.|.+ ..++ +..+......-+.+ ........+.. .++.++ .. .|++|+
T Consensus 1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~-~~~~~~l~v~~-~~~~~~-~~---~Divf~ 74 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTV-QFKGREIIIQE-AKINSF-EG---VDIAFF 74 (347)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCe-eeCCcceEEEe-CCHHHh-cC---CCEEEE
Confidence 55 3469999996 9999999999995 5667 44443321111111 11111111111 244444 33 899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
++|.+ ...++...+. ..|..|||.|..+
T Consensus 75 a~~~~-~s~~~~~~~~---~~G~~VID~Ss~f 102 (347)
T PRK06728 75 SAGGE-VSRQFVNQAV---SSGAIVIDNTSEY 102 (347)
T ss_pred CCChH-HHHHHHHHHH---HCCCEEEECchhh
Confidence 99986 5555555443 4689999998754
No 444
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.31 E-value=1.2 Score=45.36 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=82.0
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CCCeEEE-EeCChHHHHHHHHccc-CCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-HGFTVVA-YNRTTAKVDSFLANEA-KGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~G~~V~v-~dr~~~~~~~l~~~g~-~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
-|||+||.|.||+.|...... .|.+|.. -||+.+.+++..+... ....+.-.++...+...++.-.+.+ .++
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~v---T~D-- 92 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAV---TDD-- 92 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEE---ecc--
Confidence 489999999999999988775 6888774 5899888777655322 1111222323333333333244433 232
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHH--HHHcccccc--ccCCCCCcccc----ccCC--ccCCCCCcchH
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKA--LEAKGLLYV--GCGVSGGEDGA----RYGP--SLMPGGNPAAW 151 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~--l~~~gi~~l--d~~vsGg~~~a----~~G~--~im~GG~~~a~ 151 (490)
.+.++. ..-=++|||.+. .|..-.+..-. ...|.+..+ .+-+.=||--. +.|- +.-.|-.+.+.
T Consensus 93 ~~~i~~-----~~~IdvIIdATG-~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP~~~ 166 (438)
T COG4091 93 AELIIA-----NDLIDVIIDATG-VPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEPSSC 166 (438)
T ss_pred hhhhhc-----CCcceEEEEcCC-CcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCCCCcHHH
Confidence 222221 122367888754 45555554422 223333332 23344344321 2233 33333344555
Q ss_pred HHHHHHHHhhCCceeeCC
Q psy9637 152 PALKPIFQKLNPSFETSA 169 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g 169 (490)
-.+-++-+++|-.++..|
T Consensus 167 mEL~efa~a~G~evv~aG 184 (438)
T COG4091 167 MELYEFASALGFEVVSAG 184 (438)
T ss_pred HHHHHHHHhcCCeEEecc
Confidence 566677888888777655
No 445
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.29 E-value=0.22 Score=49.83 Aligned_cols=117 Identities=14% Similarity=0.192 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|+|+|-+|..+|+||+..|. +++++|.+.-....+..... ....+ .-+....+.+.++ .|++-+......
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eL-Np~V~V~~~~~~- 97 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAEL-NPYVPVTVSTGP- 97 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHH-CCCCEEEEEecc-
Confidence 589999999999999999999997 69999977544333322100 00000 0011122222333 255655555432
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
...+. +.+=++||++.. .+....++.+.+.+.++.|+.+.+.|
T Consensus 98 ~~~~~-------l~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G 140 (286)
T cd01491 98 LTTDE-------LLKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRG 140 (286)
T ss_pred CCHHH-------HhcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 22222 234468888754 44555555588888899888886644
No 446
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=93.28 E-value=0.1 Score=54.65 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=31.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|+|.|||.|.+|...|..|+++|++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4799999999999999999999999999999753
No 447
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=93.26 E-value=0.41 Score=49.14 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=35.3
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
.|+|-|.| .|.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~ 51 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLL 51 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 47899998 699999999999999999999999877655543
No 448
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.24 E-value=0.6 Score=49.43 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=49.7
Q ss_pred CcEEEEcccHHHH-HHHHHHHHC-----CCeEEEEeCC-hHHHHHHH-------HcccCCCCeeccCCHHHHHhhCCCCc
Q psy9637 5 GDIGLIGLAVMGQ-NLILNMNDH-----GFTVVAYNRT-TAKVDSFL-------ANEAKGTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 5 ~~IgiIGlG~MG~-~lA~~L~~~-----G~~V~v~dr~-~~~~~~l~-------~~g~~~~~i~~~~s~~e~v~~l~~~d 70 (490)
|||+|||.|..-. .+...|+.. +-+|+.+|++ +++++... +......++..+++.++++.. +|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g---ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG---AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CC
Confidence 5899999998743 344555542 3589999999 78765422 121113457778899998877 99
Q ss_pred EEEEecCCC
Q psy9637 71 RVMMLVKAG 79 (490)
Q Consensus 71 vIil~vp~~ 79 (490)
+||++.-.+
T Consensus 78 fVi~~~~vg 86 (419)
T cd05296 78 FVFTQIRVG 86 (419)
T ss_pred EEEEEEeeC
Confidence 999988443
No 449
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.23 E-value=1 Score=47.76 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=30.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
++|.|+|+|..|.+.++.|++.|++|+++|..+
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 579999999999999999999999999999754
No 450
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.21 E-value=0.85 Score=43.49 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=34.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 46 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMK 46 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 47888885 88999999999999999999999988776653
No 451
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.20 E-value=0.56 Score=47.89 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=37.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA 48 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~ 48 (490)
.+|.|+|.|.+|...+..+...|. .|++.++++++.+.+.+.|+
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa 215 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGA 215 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCC
Confidence 469999999999988888888898 68899999999887776654
No 452
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=93.17 E-value=0.38 Score=50.08 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=64.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH------------------HHHHHHHcccCCCCeeccCCHHHHHhhC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA------------------KVDSFLANEAKGTNIIGAHSLEELVKNL 66 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~------------------~~~~l~~~g~~~~~i~~~~s~~e~v~~l 66 (490)
.+|+|=|.|++|...|+.|.+.|.+|++.+-+.. +...+.+... .+.... +++...
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~g----a~~i~~-~e~~~~- 281 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAG----AEYITN-EELLEV- 281 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcC----ceEccc-cccccc-
Confidence 5899999999999999999999999998765544 2222222110 111222 344332
Q ss_pred CCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 67 ~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
+||+.+=|--......+-+..| .. ++|+...|.. .+.+..+.+.++||-|+
T Consensus 282 -~cDIl~PcA~~n~I~~~na~~l----~a-k~V~EgAN~P--~t~eA~~i~~erGIl~~ 332 (411)
T COG0334 282 -DCDILIPCALENVITEDNADQL----KA-KIVVEGANGP--TTPEADEILLERGILVV 332 (411)
T ss_pred -cCcEEcccccccccchhhHHHh----hh-cEEEeccCCC--CCHHHHHHHHHCCCEEc
Confidence 3787764443333333333333 22 3888888853 34555667778998775
No 453
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.11 E-value=0.27 Score=49.13 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=55.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHH----CCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMND----HGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+++.|||- ..+|.+++..|.+ .|..|++++.+ +.++.+.+.. +|+||.++..+
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~-------------------t~~l~~~~~~---ADIVI~AvG~p 215 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSR-------------------TPDLAEECRE---ADFLFVAIGRP 215 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCC-------------------chhHHHHHHh---CCEEEEecCCC
Confidence 57999995 6789999999998 77889888754 2355666666 99999999775
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
.-+. . ..+++|.+|||.+..
T Consensus 216 ~li~---~---~~vk~GavVIDVGi~ 235 (286)
T PRK14184 216 RFVT---A---DMVKPGAVVVDVGIN 235 (286)
T ss_pred CcCC---H---HHcCCCCEEEEeeee
Confidence 4322 2 235799999999864
No 454
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.09 E-value=0.66 Score=45.30 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=34.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
+++-|.|. |.+|..+++.|+++|++|++.+|++++.+++.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVA 47 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46777775 99999999999999999999999987766554
No 455
>PRK05868 hypothetical protein; Validated
Probab=93.08 E-value=0.1 Score=54.17 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=32.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|++|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 36899999999999999999999999999998865
No 456
>PRK06753 hypothetical protein; Provisional
Probab=93.07 E-value=0.11 Score=53.66 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=32.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|+|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4899999999999999999999999999998875
No 457
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.05 E-value=0.59 Score=44.81 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=34.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|.|.| .|.+|..+++.|+++|++|++.+|++++...+.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~ 47 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATA 47 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5788888 699999999999999999999999977655443
No 458
>PRK08219 short chain dehydrogenase; Provisional
Probab=93.04 E-value=0.33 Score=45.88 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=33.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
+++|-|.|. |.+|..+++.|+++ ++|++.+|+++..+.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~ 43 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELA 43 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHH
Confidence 457888874 99999999999999 99999999987766554
No 459
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=93.04 E-value=0.38 Score=44.90 Aligned_cols=71 Identities=14% Similarity=0.225 Sum_probs=46.5
Q ss_pred cEEEEcccHHHHHHHH--HHHH----CCCeEEEEeCChHHHHHHHH-------cccCCCCeeccCCHHHHHhhCCCCcEE
Q psy9637 6 DIGLIGLAVMGQNLIL--NMND----HGFTVVAYNRTTAKVDSFLA-------NEAKGTNIIGAHSLEELVKNLKKPRRV 72 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~--~L~~----~G~~V~v~dr~~~~~~~l~~-------~g~~~~~i~~~~s~~e~v~~l~~~dvI 72 (490)
||+|||.|..-.+.-. .+.. .+-+++.+|+++++++.... +.....++..++|.+++++. +|+|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g---ADfV 77 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG---ADFV 77 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT---ESEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC---CCEE
Confidence 7999999987766322 2332 13479999999998874322 22223466778999998887 9999
Q ss_pred EEecCCC
Q psy9637 73 MMLVKAG 79 (490)
Q Consensus 73 il~vp~~ 79 (490)
|.++-.+
T Consensus 78 i~~irvG 84 (183)
T PF02056_consen 78 INQIRVG 84 (183)
T ss_dssp EE---TT
T ss_pred EEEeeec
Confidence 9988655
No 460
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=93.02 E-value=0.61 Score=45.46 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=34.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
+++-|.|. |.+|..+++.|+++|++|++.+|+.++.+.+.+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEA 47 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 45667774 789999999999999999999999887766543
No 461
>PRK09186 flagellin modification protein A; Provisional
Probab=92.92 E-value=0.63 Score=44.96 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=54.8
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|...++|-|.|. |.+|..+|..|+++|++|++.+|++++.+.+.+.-. ..... +...++..=+.+.
T Consensus 1 ~~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~------------~~~~~-~~~~~~~~Dl~d~ 67 (256)
T PRK09186 1 MLKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLG------------KEFKS-KKLSLVELDITDQ 67 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHH------------hhcCC-CceeEEEecCCCH
Confidence 333457888875 899999999999999999999999887766543210 00000 0011222333444
Q ss_pred chHHHHHHhhcccCCCCCEEEcCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s 103 (490)
..+.++++.+.....+=|+||.+.
T Consensus 68 ~~~~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 68 ESLEEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHHHHHHHcCCccEEEECC
Confidence 456666666554444446777664
No 462
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.89 E-value=0.33 Score=48.74 Aligned_cols=73 Identities=14% Similarity=0.262 Sum_probs=54.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHH----CCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMND----HGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+++.|||- ..+|.++|..|.+ .|..|++++.+. .++.+.+.. +|+||.+++..
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t-------------------~~l~~~~~~---ADIvI~Avg~~ 217 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT-------------------KDIPSYTRQ---ADILIAAIGKA 217 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc-------------------hhHHHHHHh---CCEEEEecCcc
Confidence 57999995 6789999999987 688998887542 345566666 99999999664
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
.- +-.+ .+++|.+|||.|..
T Consensus 218 ~l---i~~~---~vk~GavVIDVgi~ 237 (295)
T PRK14174 218 RF---ITAD---MVKPGAVVIDVGIN 237 (295)
T ss_pred Cc---cCHH---HcCCCCEEEEeecc
Confidence 21 1122 35799999999854
No 463
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.88 E-value=0.45 Score=46.11 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=35.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
+++-|.|. |.+|..++..|+++|++|++.+|++++.+++.+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVAD 49 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 45778876 999999999999999999999999877666543
No 464
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=92.85 E-value=0.21 Score=49.19 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=42.0
Q ss_pred EEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 8 GLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 8 giIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
-|.| .|.+|..+++.|++.|++|++.+|+++..+.+..... ..... ......+..+|+||-|...
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~D~Vvh~a~~ 67 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGY-----KPWAP-LAESEALEGADAVINLAGE 67 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceee-----ecccc-cchhhhcCCCCEEEECCCC
Confidence 4666 6999999999999999999999998776433221111 01111 1222334458888877743
No 465
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.83 E-value=0.82 Score=45.28 Aligned_cols=93 Identities=18% Similarity=0.211 Sum_probs=56.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe-EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhC---CCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT-VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL---KKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l---~~~dvIil~vp~~~ 80 (490)
.+|.|+|.|.+|...+..+...|.. |++.++++++.+.+.+.|.. .+....+..+.+..+ ...|++|-++....
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~--~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~ 199 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT--ALAEPEVLAERQGGLQNGRGVDVALEFSGATA 199 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc--EecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence 4689999999999988888888986 88889999888777665542 111111122222211 13677777765433
Q ss_pred hHHHHHHhhcccCCCCCEEEcCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s 103 (490)
.++.. ...+.++-.++..+
T Consensus 200 ~~~~~----~~~l~~~G~iv~~G 218 (280)
T TIGR03366 200 AVRAC----LESLDVGGTAVLAG 218 (280)
T ss_pred HHHHH----HHHhcCCCEEEEec
Confidence 33333 33344555555544
No 466
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=92.82 E-value=0.12 Score=52.13 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=29.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
.+|.|||.|.-|..+|..|+++|++|.++++++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 3799999999999999999999999999998765
No 467
>PRK05693 short chain dehydrogenase; Provisional
Probab=92.79 E-value=0.85 Score=44.78 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=33.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
+++-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA 42 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45777774 89999999999999999999999987765543
No 468
>PRK08267 short chain dehydrogenase; Provisional
Probab=92.78 E-value=0.78 Score=44.56 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=35.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
+++-|+| .|.+|..+++.|+++|++|.+.+|+++..+.+..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 4688887 5999999999999999999999999888777654
No 469
>PRK07024 short chain dehydrogenase; Provisional
Probab=92.78 E-value=0.64 Score=45.18 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=35.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
++|-|.| .|.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAA 44 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4677777 6999999999999999999999999887766543
No 470
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.77 E-value=0.63 Score=48.01 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=56.0
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCee-ccC-CHHHHHhhC---CCCcEEEEecCCC
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNII-GAH-SLEELVKNL---KKPRRVMMLVKAG 79 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~-s~~e~v~~l---~~~dvIil~vp~~ 79 (490)
++.|+|+|.+|...+..+...|. +|++.|+++++++...+.++.. .+. ... +..+.+..+ ..+|++|-|+...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~ 249 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-VVVNPSEDDAGAEILELTGGRGADVVIEAVGSP 249 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-EeecCccccHHHHHHHHhCCCCCCEEEECCCCH
Confidence 69999999999988777777784 6778899999998877643321 010 001 111111111 1367777777643
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. .+++.+..++++-.|+-.|..
T Consensus 250 ~----~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 250 P----ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred H----HHHHHHHHhcCCCEEEEEecc
Confidence 2 233344445555555555543
No 471
>PRK06179 short chain dehydrogenase; Provisional
Probab=92.76 E-value=0.47 Score=46.38 Aligned_cols=81 Identities=14% Similarity=0.251 Sum_probs=52.0
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|+..++|-|.| .|.+|..+++.|++.|++|++.+|++++.+.. .. ..++-.=+.+.
T Consensus 1 m~~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~--------------------~~---~~~~~~D~~d~ 57 (270)
T PRK06179 1 MSNSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPI--------------------PG---VELLELDVTDD 57 (270)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccc--------------------CC---CeeEEeecCCH
Confidence 55445677887 59999999999999999999999987543210 01 12233233344
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
..++.+++.+.....+-+++|.+..
T Consensus 58 ~~~~~~~~~~~~~~g~~d~li~~ag 82 (270)
T PRK06179 58 ASVQAAVDEVIARAGRIDVLVNNAG 82 (270)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCC
Confidence 4556666665554445566766654
No 472
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.74 E-value=0.21 Score=39.64 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=30.7
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
||.|||.|..|.-+|..|.+.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999999999999999999999999998754
No 473
>PRK06057 short chain dehydrogenase; Provisional
Probab=92.71 E-value=0.82 Score=44.32 Aligned_cols=40 Identities=15% Similarity=0.036 Sum_probs=34.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|-|+|. |.+|..+++.|+++|++|++.+|++.+.+...
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 47889987 99999999999999999999999987665544
No 474
>PRK06953 short chain dehydrogenase; Provisional
Probab=92.69 E-value=0.35 Score=45.96 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=34.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
+++-|+| .|.+|..+++.|++.|++|++.+|+++..+++..
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~ 43 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQA 43 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHh
Confidence 3677777 6999999999999999999999999887766543
No 475
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.66 E-value=0.36 Score=54.16 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=31.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
++|.|||.|..|...|..|++.||+|++|++.+
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 589999999999999999999999999999864
No 476
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.66 E-value=0.28 Score=50.87 Aligned_cols=93 Identities=17% Similarity=0.285 Sum_probs=54.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHH-HCCCe---EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMN-DHGFT---VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~-~~G~~---V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
++|||||. |..|.-|.+.++ ...++ +..+..+ ...............+....++.++ .. .|++|+++|.+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-~sg~~~~~f~g~~~~v~~~~~~~~~-~~---~Divf~a~~~~ 76 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-QAGGAAPSFGGKEGTLQDAFDIDAL-KK---LDIIITCQGGD 76 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-hhCCcccccCCCcceEEecCChhHh-cC---CCEEEECCCHH
Confidence 68999996 999999998554 45566 6665443 1111111111111112112234444 33 89999999985
Q ss_pred chHHHHHHhhcccCCCC--CEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKG--DIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g--~iiId~s~~~ 106 (490)
...++...+. ..| .+|||.|+.+
T Consensus 77 -~s~~~~~~~~---~aG~~~~VID~Ss~f 101 (369)
T PRK06598 77 -YTNEVYPKLR---AAGWQGYWIDAASTL 101 (369)
T ss_pred -HHHHHHHHHH---hCCCCeEEEECChHH
Confidence 5555555543 357 5799998743
No 477
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=92.64 E-value=1.3 Score=41.71 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=66.3
Q ss_pred CcEEEEcccH--HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc----ccCCCCee-ccCCHHHHHhhC-CCCcEEEEec
Q psy9637 5 GDIGLIGLAV--MGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN----EAKGTNII-GAHSLEELVKNL-KKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~--MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----g~~~~~i~-~~~s~~e~v~~l-~~~dvIil~v 76 (490)
.+|.-+|+|. ++..+++.+ ..+.+|+.+|++++.++...+. +. ..++. ...+..+....+ +..|.||+..
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~-~~~~~v~avD~~~~~~~~a~~n~~~~g~-~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLV-GETGKVYAVDKDEKAINLTRRNAEKFGV-LNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHhCC-CCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 4678888866 333333332 2345899999999887754432 21 12232 233454544433 4589999865
Q ss_pred CCCchHHHHHHhhcccCCCCCE-EEcCCCCChHHHHHHHHHHHHccc
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDI-IIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~i-iId~s~~~~~~~~~~~~~l~~~gi 122 (490)
.. .....+++.+...|++|-. +++.. ......+..+.+++.|.
T Consensus 120 ~~-~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 120 GS-EKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGF 163 (198)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCC
Confidence 43 3567778887778887654 54443 33444555566666664
No 478
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.61 E-value=0.24 Score=51.51 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=32.2
Q ss_pred CCCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 2 AAKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 2 ~~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
+..|+|.|.|. |.+|..++..|.++||+|++.+|..
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 44579999986 9999999999999999999999864
No 479
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=92.60 E-value=0.16 Score=52.38 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=33.8
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|..+++|.|||.|.+|...|..|++.|++|+++++.+.
T Consensus 1 ~~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 1 MSMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CCCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 44567899999999999999999999999999997753
No 480
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.59 E-value=0.88 Score=44.60 Aligned_cols=40 Identities=13% Similarity=0.031 Sum_probs=34.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|-|.|. |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46888875 89999999999999999999999988876654
No 481
>PRK07774 short chain dehydrogenase; Provisional
Probab=92.58 E-value=0.68 Score=44.51 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=34.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
+++-|.|. |.+|..+++.|+++|++|++.+|+++..+.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~ 47 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVA 47 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 56888886 99999999999999999999999977655543
No 482
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.57 E-value=0.69 Score=44.77 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=34.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAA 51 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 47888874 99999999999999999999999987665543
No 483
>PRK12828 short chain dehydrogenase; Provisional
Probab=92.49 E-value=0.8 Score=43.44 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=53.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|-|.|. |.+|..+++.|+++|++|++.+|++++..+..+.-. . .. ..++..-+.+...++
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------------~--~~---~~~~~~D~~~~~~~~ 70 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVP------------A--DA---LRIGGIDLVDPQAAR 70 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHh------------h--cC---ceEEEeecCCHHHHH
Confidence 57888874 999999999999999999999999876554332100 0 01 233444444445556
Q ss_pred HHHHhhcccCCCCCEEEcCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~ 104 (490)
.+++++.....+-+.||+...
T Consensus 71 ~~~~~~~~~~~~~d~vi~~ag 91 (239)
T PRK12828 71 RAVDEVNRQFGRLDALVNIAG 91 (239)
T ss_pred HHHHHHHHHhCCcCEEEECCc
Confidence 666655544434466666543
No 484
>PRK07074 short chain dehydrogenase; Provisional
Probab=92.47 E-value=0.88 Score=44.06 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=35.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
++|-|.|. |.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD 44 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 36888885 899999999999999999999999887766543
No 485
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.42 E-value=0.69 Score=47.44 Aligned_cols=44 Identities=25% Similarity=0.246 Sum_probs=36.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHccc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNR---TTAKVDSFLANEA 48 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr---~~~~~~~l~~~g~ 48 (490)
.+|.|+|.|.+|...+..+...|.+|++.++ ++++.+.+.+.|+
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga 220 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGA 220 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Confidence 4799999999999999888889999999998 6777776655544
No 486
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.40 E-value=0.16 Score=53.21 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=32.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
..+|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 35899999999999999999999999999998764
No 487
>KOG1370|consensus
Probab=92.38 E-value=0.53 Score=46.92 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=67.0
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDF 85 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~v 85 (490)
.+.|.|.|.+|..-|..|...|..|++...+|-.+-+..-+|-+ +.+++|++.. .|+++.++-.. +-+
T Consensus 216 v~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~------V~tm~ea~~e---~difVTtTGc~---dii 283 (434)
T KOG1370|consen 216 VAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYE------VTTLEEAIRE---VDIFVTTTGCK---DII 283 (434)
T ss_pred EEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccE------eeeHHHhhhc---CCEEEEccCCc---chh
Confidence 34566999999999999999999999999988665444434432 6789999987 89998776543 333
Q ss_pred HHhhcccCCCCCEEEcCCCCC
Q psy9637 86 IDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 86 l~~l~~~l~~g~iiId~s~~~ 106 (490)
..+-...++.+.||.+.|-..
T Consensus 284 ~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 284 TGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred hHHHHHhCcCCcEEecccccc
Confidence 455556678889998888644
No 488
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=92.32 E-value=0.69 Score=45.74 Aligned_cols=85 Identities=12% Similarity=0.199 Sum_probs=55.1
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
++++-|-|+ +-+|..+|+.|+++||+|++..|+.++++++.++-.. -. .. .++++-+=+.+...+
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~------------~~-~v-~v~vi~~DLs~~~~~ 71 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED------------KT-GV-EVEVIPADLSDPEAL 71 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH------------hh-Cc-eEEEEECcCCChhHH
Confidence 356777785 8899999999999999999999999999988754221 11 00 023333333444456
Q ss_pred HHHHHhhcccCCCCCEEEcC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDG 102 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~ 102 (490)
..+.+++.....+=|++|+.
T Consensus 72 ~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 72 ERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred HHHHHHHHhcCCcccEEEEC
Confidence 66666665543333555554
No 489
>PRK12829 short chain dehydrogenase; Provisional
Probab=92.30 E-value=0.84 Score=44.23 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=35.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
++|-|+|. |.+|..++..|+++|++|++.+|+++..+.+.+
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57888874 999999999999999999999999876665543
No 490
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.28 E-value=0.66 Score=48.85 Aligned_cols=107 Identities=14% Similarity=0.077 Sum_probs=58.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA- 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~- 81 (490)
|+|.|+|+|.-|.++|+-|. .|++|+++|..+.... +.+.+. ... . .+... .+.+|+|+.+ +|.+.+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi-----~~~-~-~~~~~-~~~~d~vv~sp~i~~~~~~ 70 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGN-----LLL-P-SNDFD-PNKSDLEIPSPGIPPSHPL 70 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCC-----EEe-c-HHHcC-cCCCCEEEECCCCCCCCHH
Confidence 47999999999999999999 9999999996533211 111121 121 1 22221 1237877765 343322
Q ss_pred HH---HHHH--hhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcc
Q psy9637 82 VD---DFID--KLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKG 121 (490)
Q Consensus 82 v~---~vl~--~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~g 121 (490)
+. +++. +++..+.+..|-|-+|++.-.++.-+...+...|
T Consensus 71 ~~~a~~i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g 115 (401)
T PRK03815 71 IQKAKNLISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFG 115 (401)
T ss_pred HHHHHHHhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCC
Confidence 21 2221 1221122334566666666444444446666666
No 491
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.25 E-value=0.96 Score=48.46 Aligned_cols=121 Identities=24% Similarity=0.273 Sum_probs=63.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~~~~ 81 (490)
..+|+|+|+|.-|.+.++.|. .|.+|+++|.+++....+.+.... .+.. ....+.... +|+|+.+= |...+
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~---~d~vV~SPgI~~~~p 78 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYSK--NAIA-ALSDSRWQN---LDKIVLSPGIPLTHE 78 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcC--ceec-cCChhHhhC---CCEEEECCCCCCCCH
Confidence 358999999999999999998 599999999654433222211000 1111 112223333 78877653 22212
Q ss_pred -HHHHH---------Hhhc-ccCCC-CCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 82 -VDDFI---------DKLV-PLLEK-GDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 82 -v~~vl---------~~l~-~~l~~-g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
+.... -+++ ....+ .-|-|-+||+.-.++.-+...+...|..+.-++..|
T Consensus 79 ~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG 140 (454)
T PRK01368 79 IVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIG 140 (454)
T ss_pred HHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCC
Confidence 22111 1222 22222 245566666664444444477777676544333333
No 492
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.25 E-value=0.19 Score=52.25 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=31.4
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHC---CCeEEEEeCC
Q psy9637 2 AAKGDIGLIGLAVMGQNLILNMNDH---GFTVVAYNRT 36 (490)
Q Consensus 2 ~~~~~IgiIGlG~MG~~lA~~L~~~---G~~V~v~dr~ 36 (490)
-.+.+|.|||.|..|..+|..|+++ |++|+++++.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 0346899999999999999999998 9999999995
No 493
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.23 E-value=0.54 Score=50.52 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.+|.|||.|..|...|..|++.|++|++|++.+
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 579999999999999999999999999999875
No 494
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=92.22 E-value=0.091 Score=47.34 Aligned_cols=88 Identities=18% Similarity=0.314 Sum_probs=55.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
..+|++||. + .++...|.+.+++|.++|++++....-. ..+ .....++++.. ||+|++.-.+ -+.
T Consensus 11 ~~~V~~VG~--f-~P~~~~l~~~~~~v~v~d~~~~~~~~~~------~~~-~~~~~~~~l~~---aD~viiTGsT--lvN 75 (147)
T PF04016_consen 11 GDKVGMVGY--F-QPLVEKLKERGAEVRVFDLNPDNIGEEP------GDV-PDEDAEEILPW---ADVVIITGST--LVN 75 (147)
T ss_dssp TSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSC------T-E-EGGGHHHHGGG----SEEEEECHH--CCT
T ss_pred CCEEEEEcC--c-HHHHHHHhcCCCCEEEEECCCCCCCCCC------CcC-CHHHHHHHHcc---CCEEEEEeee--eec
Confidence 368999995 2 2478888889999999999987543210 111 34455556555 8999876432 455
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
..++.++...+++..++-.|.+.
T Consensus 76 ~Ti~~iL~~~~~~~~vil~GpS~ 98 (147)
T PF04016_consen 76 GTIDDILELARNAREVILYGPSA 98 (147)
T ss_dssp TTHHHHHHHTTTSSEEEEESCCG
T ss_pred CCHHHHHHhCccCCeEEEEecCc
Confidence 66677777766677776666654
No 495
>PRK07538 hypothetical protein; Provisional
Probab=92.21 E-value=0.16 Score=53.46 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=31.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|+|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 5899999999999999999999999999999864
No 496
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.20 E-value=1 Score=48.34 Aligned_cols=32 Identities=13% Similarity=0.006 Sum_probs=30.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRT 36 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~ 36 (490)
++|+|+|+|+-|.+.++-|.+.|.+|+++|.+
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence 58999999999999999999999999999954
No 497
>PRK07045 putative monooxygenase; Reviewed
Probab=92.19 E-value=0.17 Score=52.67 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=34.1
Q ss_pred CC-CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 1 MA-AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 1 M~-~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|. .+.+|.|||.|..|...|..|+++|++|+++++.++
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 44 456899999999999999999999999999998865
No 498
>KOG0023|consensus
Probab=92.17 E-value=0.42 Score=48.15 Aligned_cols=40 Identities=18% Similarity=0.414 Sum_probs=29.8
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-HGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~G~~V~v~dr~~~~~~~l~~ 45 (490)
++|||+|+|-.|. ||..+++ -|++|+++|++..+.+++.+
T Consensus 183 ~~vgI~GlGGLGh-~aVq~AKAMG~rV~vis~~~~kkeea~~ 223 (360)
T KOG0023|consen 183 KWVGIVGLGGLGH-MAVQYAKAMGMRVTVISTSSKKKEEAIK 223 (360)
T ss_pred cEEEEecCcccch-HHHHHHHHhCcEEEEEeCCchhHHHHHH
Confidence 6799999887664 5555554 59999999999866555544
No 499
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=92.15 E-value=0.77 Score=44.52 Aligned_cols=84 Identities=13% Similarity=0.214 Sum_probs=54.4
Q ss_pred EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCC---C
Q psy9637 30 VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS---E 106 (490)
Q Consensus 30 V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~---~ 106 (490)
|.+||+++++.+.+.+... +..+++++++++ +.+|+|++|.|+. ...++...+ |+.|.-|+-.+.. .
T Consensus 5 vaV~D~~~e~a~~~a~~~g----~~~~~d~~eLl~--~~vDaVviatp~~-~H~e~a~~a---L~aGkhVl~~s~gAlad 74 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCG----AKIVSDFDEFLP--EDVDIVVEAASQE-AVKEYAEKI---LKNGKDLLIMSVGALAD 74 (229)
T ss_pred EEEECCCHHHHHHHHHHhC----CceECCHHHHhc--CCCCEEEECCChH-HHHHHHHHH---HHCCCCEEEECCcccCC
Confidence 4589999999998876532 235789999875 2599999999996 555554443 3455433334443 2
Q ss_pred hHHHHHHHHHHHHcccc
Q psy9637 107 YQDTDRRSKALEAKGLL 123 (490)
Q Consensus 107 ~~~~~~~~~~l~~~gi~ 123 (490)
....+++.+..++.|..
T Consensus 75 ~e~~~~l~~aA~~~g~~ 91 (229)
T TIGR03855 75 RELRERLREVARSSGRK 91 (229)
T ss_pred HHHHHHHHHHHHhcCCE
Confidence 34455555666666654
No 500
>PLN02427 UDP-apiose/xylose synthase
Probab=92.13 E-value=0.4 Score=49.89 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=34.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHH
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDH-GFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~ 44 (490)
.|||.|.| .|.+|+.+++.|+++ |++|+++||++++.+.+.
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~ 56 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLL 56 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhh
Confidence 36899998 599999999999998 599999999877766554
Done!