RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9637
(490 letters)
>gnl|CDD|215895 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal
domain. This family represents the C-terminal all-alpha
domain of 6-phosphogluconate dehydrogenase. The domain
contains two structural repeats of 5 helices each.
Length = 290
Score = 300 bits (770), Expect = 3e-99
Identities = 103/161 (63%), Positives = 125/161 (77%), Gaps = 1/161 (0%)
Query: 172 PKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIR 231
K + DK EF+E++RQALYASKIVSYAQGFML+R A++ +GW LN G IA +WRGGCIIR
Sbjct: 131 AKDKGDKAEFIEDVRQALYASKIVSYAQGFMLLRAASKEYGWNLNLGEIARIWRGGCIIR 190
Query: 232 SVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAF 291
+ FL IK A++KNP L NLLLDP+FK I Q SWR VV+ + GIP PAF++AL++
Sbjct: 191 AQFLDKIKDAYEKNPDLPNLLLDPYFKKEIKEYQQSWRRVVAIAVEAGIPVPAFSSALSY 250
Query: 292 YDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332
YD YR++RLPANL+QAQRDYFGAHTYE G F HTNWT
Sbjct: 251 YDSYRTERLPANLIQAQRDYFGAHTYERTDKEGFF-HTNWT 290
Score = 264 bits (676), Expect = 2e-85
Identities = 91/131 (69%), Positives = 106/131 (80%)
Query: 358 GHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDI 417
GH+VKMVHNGIEYGDMQLI EAY L+ LG+S+DE++ VFE+WNKGELDS+LIEIT DI
Sbjct: 1 GHYVKMVHNGIEYGDMQLIAEAYDLLKTVLGLSNDEIADVFEEWNKGELDSYLIEITADI 60
Query: 418 LKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQK 477
L+ KD DG PLV+KI D AGQKGTGKWT SAL+ GVPV LI E+VF+R LSSL +ER
Sbjct: 61 LRKKDEDGKPLVDKILDKAGQKGTGKWTVQSALELGVPVPLITEAVFARYLSSLKEERVA 120
Query: 478 ASQVLQGPNPT 488
AS+VL GP
Sbjct: 121 ASKVLSGPKAA 131
>gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated.
Length = 459
Score = 302 bits (777), Expect = 5e-98
Identities = 99/168 (58%), Positives = 124/168 (73%), Gaps = 1/168 (0%)
Query: 168 SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGG 227
S P K + DK EF+E++RQALYASKIVSYAQGF L+R A+E +GW L+ G IA +WRGG
Sbjct: 293 SGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGG 352
Query: 228 CIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287
CIIR+ FL I A++ NP L+NLLLDP+FKD + Q + R VV+ + GIP PAF++
Sbjct: 353 CIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSS 412
Query: 288 ALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHG 335
AL++YD YR+ RLPANL+QAQRDYFGAHTYE G F HT W+ G
Sbjct: 413 ALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFF-HTEWSEDG 459
Score = 292 bits (751), Expect = 4e-94
Identities = 98/156 (62%), Positives = 119/156 (76%), Gaps = 2/156 (1%)
Query: 337 NSIAAKVGS-EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMS 395
IAAKV EPC ++G GAGH+VKMVHNGIEYGDMQLI EAY L+ LG+S +E++
Sbjct: 145 EKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIA 204
Query: 396 AVFEDWNKGELDSFLIEITKDILKFKD-TDGAPLVEKIKDYAGQKGTGKWTAISALDYGV 454
VF +WNKGEL+S+LIEIT DIL+ KD G PLV+ I D AGQKGTGKWT+ SALD GV
Sbjct: 205 DVFAEWNKGELNSYLIEITADILRQKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGV 264
Query: 455 PVTLIGESVFSRCLSSLFDERQKASQVLQGPNPTYK 490
P+TLI E+VF+R LSSL D+R AS+VL GP ++
Sbjct: 265 PLTLITEAVFARYLSSLKDQRVAASKVLSGPAAKFE 300
Score = 277 bits (711), Expect = 3e-88
Identities = 84/146 (57%), Positives = 111/146 (76%)
Query: 15 MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMM 74
MG+NL LN+ HG+TV YNRT K D FLA E KG I+ A++LEE V +L+KPR++++
Sbjct: 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILL 60
Query: 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGED 134
+VKAG+ VD I++L+PLLEKGDIIIDGGNS Y+DT RR K L KG+ ++G GVSGGE+
Sbjct: 61 MVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120
Query: 135 GARYGPSLMPGGNPAAWPALKPIFQK 160
GA +GPS+MPGG A+ + PI +K
Sbjct: 121 GALHGPSIMPGGQKEAYELVAPILEK 146
>gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate
transport and metabolism].
Length = 473
Score = 288 bits (739), Expect = 3e-92
Identities = 99/160 (61%), Positives = 126/160 (78%)
Query: 2 AAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEE 61
K DIG+IGLAVMG NL LN+ DHG+TV YNRTT K D FLA AKG NI+ A+S+EE
Sbjct: 1 MMKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEE 60
Query: 62 LVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKG 121
V +L+KPR+++++VKAG+ VD I++L+PLLEKGDIIIDGGNS Y+DT RR+K L KG
Sbjct: 61 FVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKG 120
Query: 122 LLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
+L+VG GVSGGE+GAR+GPS+MPGG A+ + PI K+
Sbjct: 121 ILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKI 160
Score = 287 bits (737), Expect = 5e-92
Identities = 105/170 (61%), Positives = 127/170 (74%), Gaps = 1/170 (0%)
Query: 168 SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGG 227
+ P DK+EF+E++RQALYASKIVSYAQGF L+R A++ +GW LN G IAL+WRGG
Sbjct: 305 AGPKLGEPGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGG 364
Query: 228 CIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287
CIIRS FL I AFD+NP L+NLLL P+FK + Q S R VV+ + GIP PAF++
Sbjct: 365 CIIRSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVVAYAVEAGIPVPAFSS 424
Query: 288 ALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
AL++YD YR+ RLPANL+QAQRDYFGAHTYE G F HTNWTG GGN
Sbjct: 425 ALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFF-HTNWTGGGGN 473
Score = 286 bits (734), Expect = 2e-91
Identities = 105/150 (70%), Positives = 121/150 (80%), Gaps = 1/150 (0%)
Query: 337 NSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
IAAKV EPCC W+G GAGHFVKMVHNGIEYGDMQLI EAY ++ LG+S +E++
Sbjct: 158 TKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAE 217
Query: 397 VFEDWNKGELDSFLIEITKDILKFKDTD-GAPLVEKIKDYAGQKGTGKWTAISALDYGVP 455
VFE+WNKGELDS+LIEIT DIL+ KD + G PLV+KI D AGQKGTGKWT ISALD GVP
Sbjct: 218 VFEEWNKGELDSYLIEITADILRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVP 277
Query: 456 VTLIGESVFSRCLSSLFDERQKASQVLQGP 485
+TLI E+VF+R LSSL DER AS+VL GP
Sbjct: 278 LTLITEAVFARYLSSLKDERVAASKVLAGP 307
>gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating).
This model does not specify whether the cofactor is
NADP only (EC 1.1.1.44), NAD only, or both. The model
does not assign an EC number for that reason [Energy
metabolism, Pentose phosphate pathway].
Length = 467
Score = 281 bits (720), Expect = 1e-89
Identities = 104/156 (66%), Positives = 129/156 (82%)
Query: 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
DIG+IGLAVMG NL LNM DHGFTV YNRT K D FLA AKG I+GA+S+EE V++
Sbjct: 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQS 60
Query: 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125
L++PR++M++VKAG+ VD I++L+PLLEKGDIIIDGGNS Y DT+RR K L+AKG+L+V
Sbjct: 61 LERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFV 120
Query: 126 GCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
G GVSGGE+GAR GPS+MPGG+ AWP + PIFQK+
Sbjct: 121 GSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKI 156
Score = 274 bits (704), Expect = 3e-87
Identities = 110/164 (67%), Positives = 131/164 (79%), Gaps = 1/164 (0%)
Query: 171 TPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCII 230
P+P DK+EF+E++RQALYASKI+SYAQGFML+R+A+E +GW LN G IAL+WRGGCII
Sbjct: 304 APEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCII 363
Query: 231 RSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALA 290
RS FL I AF +NP L+NLLL P+FKDA+ QS WR VV+ + GIP PAF+ AL+
Sbjct: 364 RSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALS 423
Query: 291 FYDGYRSKRLPANLLQAQRDYFGAHTYELLAAP-GKFVHTNWTG 333
FYDGYR+ RLPANLLQAQRDYFGAHTYE P G+F HTNWTG
Sbjct: 424 FYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWTG 467
Score = 274 bits (702), Expect = 6e-87
Identities = 107/149 (71%), Positives = 122/149 (81%)
Query: 337 NSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
IAAKV EPCC W+G GAGH+VKMVHNGIEYGDMQLICEAY ++ LG+S++E++
Sbjct: 154 QKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAE 213
Query: 397 VFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPV 456
VF +WN GELDS+LIEIT DILK KD DG PLV+KI D AGQKGTGKWTAISALD GVPV
Sbjct: 214 VFTEWNNGELDSYLIEITADILKKKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPV 273
Query: 457 TLIGESVFSRCLSSLFDERQKASQVLQGP 485
TLI ESVF+R LSSL +ER AS+VL GP
Sbjct: 274 TLITESVFARYLSSLKEERVAASKVLSGP 302
>gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional.
Length = 470
Score = 263 bits (673), Expect = 1e-82
Identities = 96/158 (60%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEEL 62
DIGLIGLAVMGQNL LN+ GF + YNRT K + F+ + T + G H+LEEL
Sbjct: 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEEL 60
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V +LKKPR+V++L+KAG AVD+ ID L+PLLEKGDIIIDGGN Y +T+RR K E KG+
Sbjct: 61 VNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGI 120
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160
LY+G GVSGGE+GARYGPSLMPGGN A+ +K I +K
Sbjct: 121 LYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEK 158
Score = 257 bits (657), Expect = 4e-80
Identities = 100/181 (55%), Positives = 122/181 (67%), Gaps = 2/181 (1%)
Query: 153 ALKPIFQKLNPSFETSAPTPK-PQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIH 211
ALK K + P K DKK F+++++ ALY SKI+SY QGF L+++A++
Sbjct: 291 ALKEERTKASSHLAGPNPANKTETEDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEF 350
Query: 212 GWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAV 271
GW LN G IA +WRGGCIIR+VFL IK AF KNP L L LDP F D + Q SWR V
Sbjct: 351 GWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDFNDELKNKQPSWRKV 410
Query: 272 VSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNW 331
VS + GIPTPAF+ +LA+Y YRS+ LPANL+QAQRDYFGAHTY+ L PG F HTNW
Sbjct: 411 VSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAF-HTNW 469
Query: 332 T 332
Sbjct: 470 E 470
Score = 238 bits (610), Expect = 3e-73
Identities = 87/153 (56%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 339 IAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVF 398
+AKVG PC +VG +GH+VKMVHNGIEYGDMQLI E+Y LM LGMS++E+S VF
Sbjct: 159 CSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVF 218
Query: 399 EDWNKGELDSFLIEITKDIL-KFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVT 457
WN+G L+S+LIEIT IL K D LV+KI D AG KGTGKWT AL+ G+PV
Sbjct: 219 NKWNEGILNSYLIEITAKILAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVP 278
Query: 458 LIGESVFSRCLSSLFDERQKASQVLQGPNPTYK 490
+ SV +R +S+L +ER KAS L GPNP K
Sbjct: 279 TMAASVDARNISALKEERTKASSHLAGPNPANK 311
>gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein;
Reviewed.
Length = 301
Score = 214 bits (549), Expect = 4e-66
Identities = 107/331 (32%), Positives = 150/331 (45%), Gaps = 58/331 (17%)
Query: 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
+G+IGL MG N+ + G VV Y+R V+ GA SLEELV
Sbjct: 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVE-----ALAEEGATGADSLEELVAK 56
Query: 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125
L PR V ++V AG D ID+L PLL GDI+IDGGNS Y+D RR++ L KG+ +V
Sbjct: 57 LPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV 116
Query: 126 GCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENI 185
G SGG G G LM GG+ A L+PIF+ L P E
Sbjct: 117 DVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPRAEDG----------------- 159
Query: 186 RQALYA--------SKIV----------SYAQGFMLMRQAAEIHGWKLNYGGIALMWRGG 227
L+A K+V +YA+GF L+ + L+ +A +WR G
Sbjct: 160 --YLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEA----SRFDLDLAAVAEVWRRG 213
Query: 228 CIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287
+IRS L A ++P L + + R V ++ L +P P A
Sbjct: 214 SVIRSWLLDLTADALAEDPKLDE------ISGYVEDS-GEGRWTVEEAIDLAVPAPVIAA 266
Query: 288 ALAFYDGYRSKR--LPAN-LLQAQRDYFGAH 315
AL + +RS++ A+ ++ A R+ FG H
Sbjct: 267 AL--FMRFRSRQEDSFADKVVAALRNGFGGH 295
Score = 99.1 bits (248), Expect = 4e-23
Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 13/129 (10%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGE-LDSFL 410
G GAGHFVKMVHNGIEYG MQ E + L+ A D ++AV E W +G + S+L
Sbjct: 163 AGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLE-ASRFDLD-LAAVAEVWRRGSVIRSWL 220
Query: 411 IEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSS 470
+++T D L +D P +++I Y G G+WT A+D VP +I ++F R
Sbjct: 221 LDLTADALA-ED----PKLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMR---- 271
Query: 471 LFDERQKAS 479
F RQ+ S
Sbjct: 272 -FRSRQEDS 279
>gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase
(decarboxylating).
Length = 493
Score = 218 bits (556), Expect = 5e-65
Identities = 83/162 (51%), Positives = 108/162 (66%), Gaps = 2/162 (1%)
Query: 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL--ANEAKGTNIIGAHS 58
AA IGL GLAVMGQNL LN+ + GF + YNRTT+KVD + A + + G
Sbjct: 3 SAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKD 62
Query: 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE 118
E+ V +++KPR V++LVKAG+ VD I L +E GD IIDGGN Y++T+RR K
Sbjct: 63 PEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAA 122
Query: 119 AKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160
KGLLY+G GVSGGE+GAR GPSLMPGG+ A+ ++ I +K
Sbjct: 123 EKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEK 164
Score = 214 bits (547), Expect = 9e-64
Identities = 88/166 (53%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
Query: 167 TSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRG 226
+ DKK+ ++++RQALYASKI SYAQG L+R + GW LN G +A +W+G
Sbjct: 315 EDILSADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKG 374
Query: 227 GCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFA 286
GCIIR+VFL IK A+D+NP L++LL+DP F + Q++WR VVS + GI TP +
Sbjct: 375 GCIIRAVFLDRIKKAYDRNPDLASLLVDPEFAKEMVERQAAWRRVVSLAINAGISTPGMS 434
Query: 287 TALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332
+LA++D YR RLPANL+QAQRDYFGAHTYE + PG F HT WT
Sbjct: 435 ASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSF-HTEWT 479
Score = 193 bits (491), Expect = 1e-55
Identities = 76/148 (51%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Query: 339 IAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVF 398
+AA+V PC ++G GAG+FVKMVHNGIEYGDMQLI EAY ++ G+S++E++ VF
Sbjct: 165 VAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVF 224
Query: 399 EDWNKGELDSFLIEITKDILKFKD-TDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVT 457
+WNKGEL+SFLIEIT DI KD LV+KI D G KGTGKWT A + V
Sbjct: 225 AEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAP 284
Query: 458 LIGESVFSRCLSSLFDERQKASQVLQGP 485
I S+ +R LS L +ER A++V +
Sbjct: 285 TIAASLDARYLSGLKEERVAAAKVFKEA 312
>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate
dehydrogenase. The NAD binding domain of
6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Length = 163
Score = 202 bits (516), Expect = 3e-63
Identities = 70/160 (43%), Positives = 94/160 (58%), Gaps = 12/160 (7%)
Query: 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
IG IGL VMG + LN+ G+TV YNRT KV+ +A A +GA S E V +
Sbjct: 2 KIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGA-----VGAASPAEFVAS 56
Query: 66 LKKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V+ +V AG+AVD I D L+P L+ GDIIIDG S+ DT RR+K L KG+
Sbjct: 57 A---DVVITMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAKELAEKGI 113
Query: 123 LYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
++ VSGGE+GA G S+M GG+ A+ +KPI + +
Sbjct: 114 HFLDAPVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAM 153
>gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase
[Carbohydrate transport and metabolism].
Length = 300
Score = 187 bits (477), Expect = 1e-55
Identities = 106/317 (33%), Positives = 150/317 (47%), Gaps = 33/317 (10%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
IG+IGL MG NL+ + D G VV Y+ V+ E K GA SL+ELV L
Sbjct: 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVE-----ELKDEGATGAASLDELVAKL 57
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
PR V ++V AG D ID L PLL GDI+IDGGNS Y+D+ RR+K L KG+ ++
Sbjct: 58 SAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLD 117
Query: 127 CGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKP-----QRDKKEF 181
G SGG GA G LM GG+ A ++L P F+ AP F
Sbjct: 118 VGTSGGVWGAERGYCLMIGGDEEAV-------ERLEPIFKALAPGEDGYLYCGPSGSGHF 170
Query: 182 LENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAA 241
++ + + + + A+GF L++ + + +A +W G +IRS L A
Sbjct: 171 VKMVHNGIEYGMMQAIAEGFELLKN----SPFDYDLEAVAEVWNHGSVIRSWLLDLTAEA 226
Query: 242 FDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRL- 300
F K+P L + + R V ++ LG+P P A AL +RS++
Sbjct: 227 FKKDPDLDQ------ISGRVSDS-GEGRWTVEEALDLGVPAPVIALAL--MMRFRSRQDD 277
Query: 301 --PANLLQAQRDYFGAH 315
+L A R+ FG H
Sbjct: 278 TFAGKVLAALRNEFGGH 294
Score = 96.3 bits (240), Expect = 4e-22
Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 10/119 (8%)
Query: 350 DWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHD-EMSAVFEDWNKGE-LD 407
+ G G+GHFVKMVHNGIEYG MQ I E + L+ + D ++ AV E WN G +
Sbjct: 160 LYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNS---PFDYDLEAVAEVWNHGSVIR 216
Query: 408 SFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSR 466
S+L+++T + K KD D +++I G G+WT ALD GVP +I ++ R
Sbjct: 217 SWLLDLTAEAFK-KDPD----LDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMR 270
>gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein;
Reviewed.
Length = 299
Score = 172 bits (437), Expect = 8e-50
Identities = 97/313 (30%), Positives = 148/313 (47%), Gaps = 25/313 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+GLIGL MG N+ + + G VV Y+ VD A I HSLEELV L
Sbjct: 3 LGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVD-----VAGKLGITARHSLEELVSKL 57
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
+ PR + ++V AG + I L PLL GDI++DGGNS Y+D RR++ L +G+ YV
Sbjct: 58 EAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD 117
Query: 127 CGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL---NPSFETSAPTPKPQRDKKEFLE 183
CG SGG G R G LM GG+ + L+P+F+ L P + + P FL+
Sbjct: 118 CGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPV-----GSGHFLK 172
Query: 184 NIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFD 243
+ + + +YA+G L+ ++ + +A +WR G +IRS L A
Sbjct: 173 MVHNGIEYGMMQAYAEGLELLDKSDFD----FDVEDVARLWRNGSVIRSWLLDLTVKALA 228
Query: 244 KNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATAL-AFYDGYRSKRLPA 302
++P L+ + + D+ R V ++ L + P A +L +
Sbjct: 229 EDPKLAG--IKGYVNDS-----GEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHM 281
Query: 303 NLLQAQRDYFGAH 315
++ A R+ FG H
Sbjct: 282 KVVSALRNQFGGH 294
Score = 91.3 bits (227), Expect = 2e-20
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGE-LDSFL 410
G G+GHF+KMVHNGIEYG MQ E L+ + ++ V W G + S+L
Sbjct: 162 AGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKS--DFDFDVEDVARLWRNGSVIRSWL 219
Query: 411 IEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSR 466
+++T L D P + IK Y G G+WT A++ V +I S+F R
Sbjct: 220 LDLTVKAL---AED--PKLAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMR 270
>gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase
(decarboxylating). This family resembles a larger
family (gnd) of bacterial and eukaryotic
6-phosphogluconate dehydrogenases but differs from it by
a deep split in a UPGMA similarity clustering tree and
the lack of a central region of about 140 residues.
Among complete genomes, it is found is found in Bacillus
subtilis and Mycobacterium tuberculosis, both of which
also contain gnd, and in Aquifex aeolicus. The protein
from Methylobacillus flagellatus KT has been
characterized as a decarboxylating 6-phosphogluconate
dehydrogenase as part of an unusual formaldehyde
oxidation cycle. In some sequenced organisms members of
this family are the sole 6-phosphogluconate
dehydrogenase present and are probably active in the
pentose phosphate cycle [Energy metabolism, Pentose
phosphate pathway].
Length = 298
Score = 157 bits (399), Expect = 2e-44
Identities = 95/315 (30%), Positives = 146/315 (46%), Gaps = 24/315 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+GLIGL MG N++ + G V Y+ V K G +L EL + L
Sbjct: 3 LGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVK-----AMKEDRTTGVANLRELSQRL 57
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
PR V ++V G VD +++L P LEKGDI+IDGGNS Y+D+ RR K L+ KG+ +
Sbjct: 58 SAPRVVWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD 116
Query: 127 CGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIR 186
CG SGG G G M GG+ A+ +P+F + P + F++ +
Sbjct: 117 CGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVAPEEQGYLYC--GPCGSGHFVKMVH 174
Query: 187 QALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNP 246
+ + + A+GF ++R + + + +A +WR G +IRS L AF ++P
Sbjct: 175 NGIEYGMMAAIAEGFEILRNSQ----FDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESP 230
Query: 247 ALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRL---PAN 303
L+ F + + R V + LG+P P AT + + S+ L
Sbjct: 231 DLAE------FSGRVSDSGEG-RWTVIAAIDLGVPAPVIAT--SLQSRFASRDLDDFANK 281
Query: 304 LLQAQRDYFGAHTYE 318
+L A R FG H +
Sbjct: 282 VLAALRKEFGGHAEK 296
Score = 83.4 bits (206), Expect = 9e-18
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 10/118 (8%)
Query: 351 WVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHD-EMSAVFEDWNKGE-LDS 408
+ G G+GHFVKMVHNGIEYG M I E + ++ + D ++ V W +G + S
Sbjct: 160 YCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNS---QFDFDIPEVARVWRRGSVIRS 216
Query: 409 FLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSR 466
+L+++T + + D + + G G+WT I+A+D GVP +I S+ SR
Sbjct: 217 WLLDLTAIAFR-ESPD----LAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSR 269
>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 80.7 bits (200), Expect = 6e-17
Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 16/205 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
I IGL +MG + N+ G V YNRT K LA A G A S E
Sbjct: 3 IAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLA--AAG--ATVAASPAEAAAEA 58
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
V+ ++ +AV + + L+ L+ G I+ID + + AL AKGL
Sbjct: 59 D---VVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLE 115
Query: 124 YVGCGVSGGEDGARYG-PSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFL 182
++ VSGG GA G ++M GG+ A+ KP+ + + + P Q K
Sbjct: 116 FLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKL--- 172
Query: 183 ENIRQALYASKIVSYAQGFMLMRQA 207
L A I + A+ L +A
Sbjct: 173 --ANNILLAGNIAALAEALALAEKA 195
Score = 32.9 bits (76), Expect = 0.34
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAV 397
VG GAG K+ +N + G++ + EA L G+ D + V
Sbjct: 161 VGPVGAGQAAKLANNILLAGNIAALAEALALAE-KAGLDPDVVLEV 205
>gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase.
This model represents 2-hydroxy-3-oxopropionate
reductase (EC 1.1.1.60), also called tartronate
semialdehyde reductase. It follows glyoxylate
carboligase and precedes glycerate kinase in D-glycerate
pathway of glyoxylate degradation. The eventual product,
3-phosphoglycerate, is an intermediate of glycolysis and
is readily metabolized. Tartronic semialdehyde, the
substrate of this enzyme, may also come from other
pathways, such as D-glucarate catabolism.
Length = 291
Score = 57.2 bits (138), Expect = 5e-09
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IGL +MG + +N+ G+ + D LA GA + E +
Sbjct: 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLA--------AGAVTAETARQVT 53
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
++ + +V V++ + ++ + G ++D + ++ R +KA++ KG+
Sbjct: 54 EQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
Y+ VSGGE GA G S+M GG+ A + +KP+F+ L
Sbjct: 114 YLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEAL 152
>gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional.
Length = 296
Score = 53.5 bits (129), Expect = 8e-08
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
+G IGL +MG+ + N+ G+++V Y+R V +A A+ A + + + +
Sbjct: 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAE-----TASTAKAVAE- 57
Query: 66 LKKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
+ + ML V + + ++ + G ++ID + + + AL+AKG+
Sbjct: 58 -QCDVIITML-PNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGI 115
Query: 123 LYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKLNPS 164
+ VSGGE A G S+M GG+ A + + + + S
Sbjct: 116 EMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGS 158
>gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase.
3-hydroxyisobutyrate dehydrogenase is an enzyme that
catalyzes the NAD+-dependent oxidation of
3-hydroxyisobutyrate to methylmalonate semialdehyde of
the valine catabolism pathway. In Pseudomonas
aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is
co-induced with methylmalonate-semialdehyde
dehydrogenase (mmsA) when grown on medium containing
valine as the sole carbon source. The positive
transcriptional regulator of this operon (mmsR) is
located upstream of these genes and has been identified
as a member of the XylS/AraC family of transcriptional
regulators. 3-hydroxyisobutyrate dehydrogenase shares
high sequence homology to the characterized
3-hydroxyisobutyrate dehydrogenase from rat liver with
conservation of proposed NAD+ binding residues at the
N-terminus (G-8,10,13,24 and D-31). This enzyme belongs
to the 3-hydroxyacid dehydrogenase family, sharing a
common evolutionary origin and enzymatic mechanism with
6-phosphogluconate. HIBADH exhibits sequence similarity
to the NAD binding domain of 6-phosphogluconate
dehydrogenase above trusted (pfam03446) [Energy
metabolism, Amino acids and amines].
Length = 288
Score = 45.9 bits (109), Expect = 2e-05
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 12/154 (7%)
Query: 10 IGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKP 69
IGL MG + N+ G V ++ V+ +A A+ A S E +
Sbjct: 2 IGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQ-----AAASPAEAA---EGA 53
Query: 70 RRVMMLVKAGS---AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
RV+ ++ AG +V + ++P + KG ++ID + + ++ A G +++
Sbjct: 54 DRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD 113
Query: 127 CGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159
VSGG GAR G + M GG + A +P+
Sbjct: 114 APVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLG 147
>gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional.
Length = 292
Score = 44.2 bits (104), Expect = 7e-05
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKV-DSFLANEAKGTNIIGAHSLEELVKN 65
+G IGL +MG + +N+ G + + T V D L+ +GA S+E +
Sbjct: 3 LGFIGLGIMGTPMAINLARAGHQL--HVTTIGPVADELLS--------LGAVSVETARQV 52
Query: 66 LKKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
+ + ++V V++ + + KG I+D + +T R ++ + G
Sbjct: 53 TEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGG 112
Query: 123 LYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
Y+ VSGGE GAR G S+M GG+ A + +KP+F+ L
Sbjct: 113 DYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELL 152
>gnl|CDD|223749 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell
envelope biogenesis, outer membrane].
Length = 436
Score = 33.8 bits (78), Expect = 0.22
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
IG+IGL +G L GF V+ + KVD +G + I L+E+VK
Sbjct: 12 IGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKL----NRGESYIEEPDLDEVVK-- 65
Query: 67 KKPRRVMMLVKAG--SAVDDFIDKLVPLLEKGDIII 100
V++G A D + L++ D+ I
Sbjct: 66 -------EAVESGKLRATTDPEE-----LKECDVFI 89
>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is
a monomeric enzyme which catalyzes the transfer of the
high-energy phosphate group of 1,3-bisphosphoglycerate
to ADP, forming ATP and 3-phosphoglycerate. This
reaction represents the first of the two substrate-level
phosphorylation events in the glycolytic pathway.
Substrate-level phosphorylation is defined as production
of ATP by a process, which is catalyzed by
water-soluble enzymes in the cytosol; not involving
membranes and ion gradients. .
Length = 397
Score = 32.6 bits (75), Expect = 0.40
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGG 103
L+ L K L+ P R + + G+ V D I + LL+K D +I GG
Sbjct: 177 LKYLAKALENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGG 221
>gnl|CDD|183384 PRK11924, PRK11924, RNA polymerase sigma factor; Provisional.
Length = 179
Score = 30.7 bits (70), Expect = 1.1
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 163 PSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIA 221
P F +A TP+ K+ L I + L A V + F+L + G L+Y IA
Sbjct: 97 PEFAETAETPEAALLAKDDLARIDRCLDALP-VKQREVFLL----RYVEG--LSYREIA 148
>gnl|CDD|220552 pfam10074, DUF2285, Uncharacterized conserved protein (DUF2285).
This domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 106
Score = 29.5 bits (67), Expect = 1.3
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 251 LLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQA 307
+ LDP +D + A WR AL G A AL + +RL +L+A
Sbjct: 3 VPLDPDLEDRLEAAARLWR------ALNGRAAGPDARALP---AQQRRRLR-LMLRA 49
>gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase.
Length = 383
Score = 30.9 bits (71), Expect = 1.5
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGG 103
LE L K L+ P R + + G+ V D I + LL+K D ++ GG
Sbjct: 176 LEALSKALENPERPFVAILGGAKVSDKIKVIENLLDKVDKLLIGG 220
>gnl|CDD|225618 COG3076, COG3076, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 135
Score = 29.8 bits (67), Expect = 1.6
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111
+D +++L+PL EK D+ DG + ++D +
Sbjct: 87 IDAQVEQLMPLAEKFDVEYDGWGTYFEDPN 116
>gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme
F420-dependent.
Length = 93
Score = 28.7 bits (65), Expect = 1.7
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTV-VAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
IG+IG MG+ L + G V +A +R K + E G S EE V
Sbjct: 2 IGIIGAGNMGEALARGLAAAGHEVVIANSRNPEKAAALA--EELGVKATAV-SNEEAV-- 56
Query: 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIID 101
++ V + VK + + +L LL KG ++I
Sbjct: 57 -EEADVVFLAVKP-EDAPEVLAELADLL-KGKLVIS 89
>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional.
Length = 481
Score = 30.4 bits (68), Expect = 2.8
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 21 LNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80
L +ND T + +T V FL G + L+ LV + P+R + GS
Sbjct: 219 LYVNDAFGTAHRAHASTEGVTKFLKPSVAG--FLLQKELDYLVGAVSNPKRPFAAIVGGS 276
Query: 81 AVDDFIDKLVPLLEKGDIIIDGG 103
V I + LLEK DI++ GG
Sbjct: 277 KVSSKIGVIESLLEKCDILLLGG 299
>gnl|CDD|223204 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and
metabolism].
Length = 395
Score = 29.8 bits (68), Expect = 3.1
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGG 103
L+ L K L+ P R + + G+ V D I + LL+K D +I GG
Sbjct: 179 LDALGKALENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGG 223
>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and
related dehydrogenases, NAD-binding and catalytic
domains. (R)-2-hydroxyglutarate dehydrogenase (HGDH)
catalyzes the NAD-dependent reduction of 2-oxoglutarate
to (R)-2-hydroxyglutarate. HGDH is a member of the
D-2-hydroxyacid NAD(+)-dependent dehydrogenase family;
these proteins typically have a characteristic
arrangement of 2 similar subdomains of the alpha/beta
Rossmann fold NAD+ binding form. The NAD+ binding domain
is inserted within the linear sequence of the mostly
N-terminal catalytic domain, which has a similar domain
structure to the internal NAD binding domain.
Structurally, these domains are connected by extended
alpha helices and create a cleft in which NAD is bound,
primarily to the C-terminal portion of the 2nd
(internal) domain.
Length = 330
Score = 29.2 bits (66), Expect = 4.5
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 7 IGLIGL--AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVK 64
G IGL A + + L G V+ Y D + ++ AK +++ SL+EL+K
Sbjct: 153 TGRIGLTAAKLFKGL-------GAKVIGY-------DIYPSDAAK--DVVTFVSLDELLK 196
Query: 65 NLKKPRRVMMLVKAGSAVDDFIDK-LVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
+ +K + D I+K + ++ G I+I+ E QD + +ALE+ L
Sbjct: 197 KSDIISLHVPYIKGKN--DKLINKEFISKMKDGAILINTARGELQDEEAILEALESGKLA 254
Query: 124 YVGCGVSGGE 133
G V E
Sbjct: 255 GFGTDVLNNE 264
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein.
Length = 502
Score = 29.5 bits (66), Expect = 4.5
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 24 NDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKK-PRRVMMLVKAG 79
N +G +V++N TT++ D +A + GT+ +L L + K RV++ VKAG
Sbjct: 171 NQNGGMLVSWNPTTSRADFVVARDGSGTHRTINQALAALSRMGKSRTNRVIIYVKAG 227
>gnl|CDD|111251 pfam02340, PRRSV_Env, PRRSV putative envelope protein. This family
consists of a conserved probable envelope protein or
ORF2 in porcine reproductive and respiratory syndrome
virus (PRRSV) also in the family is a minor structural
protein from lactate dehydrogenase-elevating virus.
Length = 234
Score = 29.1 bits (65), Expect = 4.7
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 262 HATQSSWRAVVSQSALLGIPTPAFATALAFYDG-------YRSKRLPA 302
H Q++W+ VV+++ L I T Y S RLP
Sbjct: 103 HQGQAAWKQVVTEATLENISGLDVVTHFQHLAALEAEACTYLSSRLPM 150
>gnl|CDD|227624 COG5308, NUP170, Nuclear pore complex subunit [Intracellular
trafficking and secretion].
Length = 1263
Score = 29.5 bits (66), Expect = 5.7
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 378 EAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAG 437
E L EM+ + ++W ++ + +DI K K+ + ++ Y
Sbjct: 1199 ELIEQSKDRLFFLIKEMTWLIKEWYHSDMSFRARILLEDIKKLKNYNEFYD--PVEKYCK 1256
Query: 438 QKGTG 442
+K
Sbjct: 1257 RKYGI 1261
>gnl|CDD|235963 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase;
Validated.
Length = 442
Score = 28.7 bits (65), Expect = 7.1
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 73 MMLVKAGSAVDDFIDKLVPLLEKGDIIIDGG 103
M+L+ G+A+ D P++E G I I+G
Sbjct: 1 MLLIGNGTAIT--RDPAKPVIEDGAIAIEGN 29
>gnl|CDD|235547 PRK05654, PRK05654, acetyl-CoA carboxylase subunit beta; Validated.
Length = 292
Score = 28.6 bits (65), Expect = 7.1
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 405 ELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAI---SALDYGVPVTL 458
ELD+ L KD LKF+D+ +++K QK TG A+ G+PV L
Sbjct: 75 ELDAELE--PKDPLKFRDSKKYK--DRLKAA--QKKTGLKDAVVTGKGTIEGMPVVL 125
>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP),
D-isomer-specific 2-hydroxyacid dehydrogenases related
repressor. The transcriptional corepressor CtBP is a
dehydrogenase with sequence and structural similarity to
the d2-hydroxyacid dehydrogenase family. CtBP was
initially identified as a protein that bound the PXDLS
sequence at the adenovirus E1A C terminus, causing the
loss of CR-1-mediated transactivation. CtBP binds NAD(H)
within a deep cleft, undergoes a conformational change
upon NAD binding, and has NAD-dependent dehydrogenase
activity.
Length = 312
Score = 28.6 bits (65), Expect = 7.2
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
+GL+G +G+ + GF V+AY D ++ + + SL+EL+
Sbjct: 145 LGLVGFGRIGRAVAKRAKAFGFRVIAY-------DPYVPDGVAALGGVRVVSLDELLAR 196
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 28.9 bits (65), Expect = 7.4
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEY 107
+E L K L P+R + + G+ V D I + LLEK D ++ GG Y
Sbjct: 176 IEFLGKALANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAY 224
>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
(contains nucleotidyltransferase and I-patch
acetyltransferase domains) [Cell envelope biogenesis,
outer membrane].
Length = 460
Score = 28.7 bits (65), Expect = 8.8
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 13/57 (22%)
Query: 333 GHGGNSIAAKVGSEPCCDWV--GEQ-GAGHFVKMV-------HNG---IEYGDMQLI 376
GHG + + ++V EQ G GH V ++G + YGD+ LI
Sbjct: 53 GHGAEQVREALAERDDVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLI 109
>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional.
Length = 417
Score = 28.5 bits (64), Expect = 9.1
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGG 103
L+ K L+ P+R + + G+ V D I + LL+K D +I GG
Sbjct: 194 LDYFSKALENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGG 238
>gnl|CDD|215331 PLN02613, PLN02613, endoglucanase.
Length = 498
Score = 28.7 bits (64), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 284 AFATALAFYDGYRSKRLPAN 303
A ++ F++G RS +LP N
Sbjct: 30 ALNKSILFFEGQRSGKLPTN 49
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 28.4 bits (63), Expect = 9.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 156 PIFQKLNPSFETSAPTPKPQRDKKEFLENI 185
Q NP+ AP PK +R +K F I
Sbjct: 82 SEQQPQNPNSTEPAPPPKKRRRRKRFFTEI 111
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,487,645
Number of extensions: 2535012
Number of successful extensions: 2640
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2601
Number of HSP's successfully gapped: 72
Length of query: 490
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 389
Effective length of database: 6,457,848
Effective search space: 2512102872
Effective search space used: 2512102872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)