RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9637
(490 letters)
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase
(CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1
c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Length = 482
Score = 317 bits (815), Expect = e-104
Identities = 120/171 (70%), Positives = 133/171 (77%)
Query: 167 TSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRG 226
+ DKK FLE+IR+ALYASKI+SYAQGFML+RQAA GW LNYGGIALMWRG
Sbjct: 304 KGPQNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRG 363
Query: 227 GCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFA 286
GCIIRSVFLG IK AFD+NP L NLLLD FFK A+ Q SWR +S GIP P F
Sbjct: 364 GCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQAGIPMPCFT 423
Query: 287 TALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
TAL+FYDGYR LPANL+QAQRDYFGAHTYELLA PG+F+HTNWTGHGG+
Sbjct: 424 TALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGS 474
Score = 309 bits (794), Expect = e-100
Identities = 119/158 (75%), Positives = 137/158 (86%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
A+ DI LIGLAVMGQNLILNMNDHGF V A+NRT +KVD FLANEAKGT ++GAHSLEE+
Sbjct: 1 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEM 60
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V LKKPRR+++LVKAG AVD+FI+KLVPLL+ GDIIIDGGNSEY+DT RR + L+ KG+
Sbjct: 61 VSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI 120
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160
L+VG GVSGGEDGARYGPSLMPGGN AWP +K IFQ
Sbjct: 121 LFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQG 158
Score = 301 bits (773), Expect = 2e-97
Identities = 114/152 (75%), Positives = 128/152 (84%), Gaps = 1/152 (0%)
Query: 338 SIAAKVGS-EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
IAAKVG+ EPCCDWVG+ GAGHFVKMVHNGIEYGDMQLICEAYHLM LG+ H EM+
Sbjct: 158 GIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAK 217
Query: 397 VFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPV 456
FE+WNK ELDSFLIEIT ILKF+D DG L+ KI+D AGQKGTGKWTAISAL+YGVPV
Sbjct: 218 AFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPV 277
Query: 457 TLIGESVFSRCLSSLFDERQKASQVLQGPNPT 488
TLIGE+VF+RCLSSL DER +AS+ L+GP
Sbjct: 278 TLIGEAVFARCLSSLKDERIQASKKLKGPQNI 309
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold,
oxidoreductase; HET: FLC; 2.37A {Saccharomyces
cerevisiae}
Length = 497
Score = 308 bits (791), Expect = e-100
Identities = 107/192 (55%), Positives = 134/192 (69%), Gaps = 7/192 (3%)
Query: 153 ALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHG 212
ALK + + +D+++F++++ QALYASKI+SYAQGFML+R+AA +G
Sbjct: 298 ALKNERIRASKVLPGPEVPKDAVKDREQFVDDLEQALYASKIISYAQGFMLIREAAATYG 357
Query: 213 WKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVV 272
WKLN IALMWRGGCIIRSVFLG I A+ + P L NLL + FF DA+ QS WR +
Sbjct: 358 WKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKSI 417
Query: 273 SQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPG-------K 325
+ + GIPTPAF+TAL+FYDGYRS+RLPANLLQAQRDYFGAHT+ +L K
Sbjct: 418 ALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDK 477
Query: 326 FVHTNWTGHGGN 337
+H NWTGHGGN
Sbjct: 478 DIHINWTGHGGN 489
Score = 306 bits (785), Expect = 4e-99
Identities = 108/158 (68%), Positives = 130/158 (82%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
D GLIGLAVMGQNLILN DHGFTV AYNRT +KVD FLANEAKG +IIGA S+E+
Sbjct: 9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDF 68
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
+ LK+PR+VM+LVKAG+ VD I+++VPLLEKGDIIIDGGNS + D++RR + L+ KG+
Sbjct: 69 ISKLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGI 128
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160
L+VG GVSGGE+GARYGPSLMPGG+ AWP +K IFQ
Sbjct: 129 LFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQS 166
Score = 299 bits (767), Expect = 2e-96
Identities = 105/151 (69%), Positives = 121/151 (80%)
Query: 338 SIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAV 397
SI+AK EPCC+WVG GAGH+VKMVHNGIEYGDMQLICEAY +M G + E+S V
Sbjct: 166 SISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDV 225
Query: 398 FEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVT 457
F WN G LDSFL+EIT+DILKF D DG PLVEKI D AGQKGTGKWTAI+ALD G+PVT
Sbjct: 226 FAKWNNGVLDSFLVEITRDILKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVT 285
Query: 458 LIGESVFSRCLSSLFDERQKASQVLQGPNPT 488
LIGE+VF+RCLS+L +ER +AS+VL GP
Sbjct: 286 LIGEAVFARCLSALKNERIRASKVLPGPEVP 316
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.30A {Geobacter metallireducens}
Length = 358
Score = 300 bits (771), Expect = 9e-99
Identities = 102/362 (28%), Positives = 153/362 (42%), Gaps = 67/362 (18%)
Query: 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLE 60
IG+IGL MG +++ + G V Y+ V + I GA S+E
Sbjct: 19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQ-----ALEREGIAGARSIE 73
Query: 61 ELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK 120
E L KPR V ++V A VD + ++ PLL DI+IDGGNS YQD RR+ + A+
Sbjct: 74 EFCAKLVKPRVVWLMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQ 132
Query: 121 GLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKE 180
G+ YV G SGG G G LM GG A L P+F+ L P + TP ++ +
Sbjct: 133 GITYVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGT 192
Query: 181 FLENIRQALYA--------SKIV----------SYAQGFMLMRQAA-------------- 208
L+ K+V +YA+G ++ A
Sbjct: 193 AELGY---LHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAP 249
Query: 209 ----EIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA-AFDKNPALSNLLLDPFFKDAIHA 263
+ + + L+ I +WR G +I S +L ++ A A +P L F+
Sbjct: 250 LRNPDFYRYDLDLADITEVWRRGSVISS-WLLDLSATALLDSPDLQE------FQG--RV 300
Query: 264 TQSS---WRAVVSQSAL-LGIPTPAFATALAFYDGYRS--KRLPAN-LLQAQRDYFGAHT 316
+ S W +A+ G+P ++AL Y+ + S + AN LL A R FG H
Sbjct: 301 SDSGEGRW---TVAAAIDEGVPAHVLSSAL--YERFSSRGEDDFANRLLSAMRYEFGGHR 355
Query: 317 YE 318
+
Sbjct: 356 EK 357
Score = 213 bits (545), Expect = 4e-65
Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 42/183 (22%)
Query: 338 SIAAKVGSEPCCD--------------WVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLM 383
++A +G+ P G GAGHFVKMVHNGIEYG M E +++
Sbjct: 172 TLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNIL 231
Query: 384 TGALGMSHD--------------------EMSAVFEDWNKGE-LDSFLIEITKDILKFKD 422
A +++ + E W +G + S+L++++ L
Sbjct: 232 HHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLDS- 290
Query: 423 TDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVL 482
P +++ + G G+WT +A+D GVP ++ +++ R S D+ A+++L
Sbjct: 291 ----PDLQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSALYERFSSRGEDDF--ANRLL 344
Query: 483 QGP 485
Sbjct: 345 SAM 347
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose
phosphate pathway, oxidoreductase, 6-phosphogl
dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB:
2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Length = 480
Score = 301 bits (773), Expect = 2e-97
Identities = 88/153 (57%), Positives = 109/153 (71%), Gaps = 1/153 (0%)
Query: 338 SIAAKVGS-EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
IAA EPC ++G GAGH+VKMVHNGIEYGDMQLI EAY L+ G L ++++E++
Sbjct: 170 KIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQ 229
Query: 397 VFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPV 456
F +WN GEL S+LI+ITKDI KD DG LV+ I D A KGTGKWT+ SALD G P+
Sbjct: 230 TFTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPL 289
Query: 457 TLIGESVFSRCLSSLFDERQKASQVLQGPNPTY 489
+LI ESVF+R +SSL D+R AS+VL GP
Sbjct: 290 SLITESVFARYISSLKDQRVAASKVLSGPQAQP 322
Score = 298 bits (765), Expect = 3e-96
Identities = 75/158 (47%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
+K IG++G+AVMG+NL LN+ G+TV +NR+ K + +A E G ++ ++++E
Sbjct: 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIA-ENPGKKLVPYYTVKEF 72
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V++L+ PRR++++VKAG+ D ID L P L+KGDIIIDGGN+ +QDT RR++ L A+G
Sbjct: 73 VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF 132
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160
++G GVSGGE+GA GPS+MPGG A+ + PI K
Sbjct: 133 NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTK 170
Score = 296 bits (759), Expect = 2e-95
Identities = 87/164 (53%), Positives = 111/164 (67%), Gaps = 1/164 (0%)
Query: 168 SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGG 227
S P +P DK EF+E +R+ALY KIVSYAQGF +R A+E + W LNYG IA ++R G
Sbjct: 316 SGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAG 375
Query: 228 CIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287
CIIR+ FL I A +NP ++NLLL P+FK Q + R VV+ + GIP P F+
Sbjct: 376 CIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSA 435
Query: 288 ALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNW 331
A+A+YD YR+ LPANL+QAQRDYFGAHTY+ + G F HT W
Sbjct: 436 AVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVF-HTEW 478
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt,
oxidoreductase, gluconate utilization; HET: ATR RES P33;
2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Length = 474
Score = 298 bits (766), Expect = 2e-96
Identities = 76/158 (48%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
A+ + G++G+AVMG+NL LN+ G+TV YNRTT+K + E + N++ +LEE
Sbjct: 4 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF-KEHQDKNLVFTKTLEEF 62
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V +L+KPRR+M++V+AG+A D I L+PLL+ GDI+IDGGN+ + DT RR+ L G+
Sbjct: 63 VGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGI 122
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160
++G GVSGGE GA GPS+MPGG A+ + PIF++
Sbjct: 123 NFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQ 160
Score = 296 bits (760), Expect = 1e-95
Identities = 90/166 (54%), Positives = 109/166 (65%), Gaps = 1/166 (0%)
Query: 168 SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGG 227
S P DKKE +E IR+ALY SKI+SYAQGF +R+A+E W L YG IA +WR G
Sbjct: 308 SGPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAG 367
Query: 228 CIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287
CIIR+ FL NI AFDK+ L NLLLD +F D Q + R VVS + G P P F +
Sbjct: 368 CIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTS 427
Query: 288 ALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTG 333
A+++YD YRS+ LPANL+QAQRDYFGAHTYE G F H +W
Sbjct: 428 AISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIF-HYDWYT 472
Score = 295 bits (758), Expect = 3e-95
Identities = 93/156 (59%), Positives = 118/156 (75%), Gaps = 3/156 (1%)
Query: 338 SIAAKVGS--EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMS 395
IAAK +PC ++G GAGH+VKMVHNGIEYGDMQLI E+Y L+ LG+S+ E+
Sbjct: 160 QIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQ 219
Query: 396 AVFEDWNKGELDSFLIEITKDILKFKDTDG-APLVEKIKDYAGQKGTGKWTAISALDYGV 454
A+FE+WN+GELDS+LIEITK++LK KD +G +V+KI D AG KGTGKWT+ SALD GV
Sbjct: 220 AIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGV 279
Query: 455 PVTLIGESVFSRCLSSLFDERQKASQVLQGPNPTYK 490
P+ LI ESVF+R +S+ DER KAS+VL GP +
Sbjct: 280 PLPLITESVFARYISTYKDERVKASKVLSGPALDFS 315
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase,
CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP:
a.100.1.1 c.2.1.6
Length = 478
Score = 281 bits (720), Expect = 1e-89
Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 3/158 (1%)
Query: 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGT---NIIGAHSLEEL 62
D+G++GL VMG NL LN+ + GF V +NRT +K + F+ A N+ ++E
Sbjct: 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
+LKKPR+ ++LV+AG+A D I++L + EKGDI++D GN+ ++D RR++ LEA GL
Sbjct: 63 AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGL 122
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160
++G G+SGGE+GAR GP+ PGG + W ++PI +
Sbjct: 123 RFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEA 160
Score = 278 bits (712), Expect = 2e-88
Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 338 SIAAKVGS-EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
+ AAK PC G GAG VKM HN EY +Q+ E + ++ +G+++DE++A
Sbjct: 160 AAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRA-MGLNNDEVAA 218
Query: 397 VFEDW-NKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVP 455
V EDW +K L S++++I+ + KD DG+ L E + D G KGTG W+A AL+ GVP
Sbjct: 219 VLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVP 278
Query: 456 VTLIGESVFSRCLSSLFDERQKASQVLQGPNPT 488
+ +V SR + ERQ + G +
Sbjct: 279 APSLNMAVVSRQFTMYKTERQANASNAPGITQS 311
Score = 275 bits (705), Expect = 2e-87
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 5/176 (2%)
Query: 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218
++ T K + ++ + ++ + I YAQ F +R+ ++H + LN
Sbjct: 303 SNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLP 362
Query: 219 GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL- 277
+R GCI++ L + AF+KNP +SNL+ F+ I A ++R +V+
Sbjct: 363 ATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMCA--FQTEIRAGLQNYRDMVALITSK 420
Query: 278 LGIPTPAFATALAFYDGYRSKRLP-ANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332
L + P + +L + + L L+ QRD FG H YE + G+ W
Sbjct: 421 LEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRE-SFQWP 475
>3l6d_A Putative oxidoreductase; structural genomics, protein structure
initiative, oxidoredu PSI-2; HET: MSE; 1.90A
{Pseudomonas putida}
Length = 306
Score = 77.3 bits (191), Expect = 7e-16
Identities = 24/163 (14%), Positives = 53/163 (32%), Gaps = 10/163 (6%)
Query: 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLE 60
+ + D+ +IGL MG + + G V +NR+ K + +A A S++
Sbjct: 6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAH-----LCESVK 60
Query: 61 ELVKNLKKPRRVMMLVKAGSAVDD-FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA 119
+ + ++ A + V I+D + + +
Sbjct: 61 AAL---SASPATIFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQ 117
Query: 120 KGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
G YV + + + G+ A+ + + + L
Sbjct: 118 AGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGL 160
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG,
protein structure initiative, PSI, midwest center for
structural genomics; HET: MSE TLA; 1.65A {Salmonella
typhimurium} SCOP: a.100.1.1 c.2.1.6
Length = 299
Score = 76.8 bits (190), Expect = 9e-16
Identities = 35/159 (22%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IGL +MG+ + N+ G+++V +R + +A A+ A + + + +
Sbjct: 8 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAE-----TASTAKAIAEQC 62
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
++ ++ V + + ++ + G ++ID + + S AL+AKG+
Sbjct: 63 D---VIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVE 119
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
+ VSGGE A G S+M GG+ A + + + +
Sbjct: 120 MLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAM 158
Score = 29.1 bits (66), Expect = 3.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHL 382
G+ GAG+ K+ + I ++ + EA L
Sbjct: 165 TGDIGAGNVTKLANQVIVALNIAAMSEALTL 195
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas
SP}
Length = 320
Score = 76.9 bits (190), Expect = 1e-15
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
I +G MG + + + G+ + +NRT A+ S A A ++
Sbjct: 34 ITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGAT-----IHEQARAAARDA 88
Query: 67 KKPRRVMMLVKAGSAVDD--FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124
V+ +++ G+ V D F + ++ G + +D + ++ + L A G+ +
Sbjct: 89 DI---VVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAH 145
Query: 125 VGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
+ VSGG GA G +M GG PA + P+ +
Sbjct: 146 LDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF 183
Score = 28.3 bits (64), Expect = 5.2
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHL 382
VG G+G K+ + I + + EA
Sbjct: 189 VGPHGSGQLTKLANQMIVGITIGAVAEALLF 219
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A
{Geobacter sulfurreducens}
Length = 287
Score = 73.3 bits (181), Expect = 1e-14
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
G +GL +MG + N+ GF V +NR AK +A A+ A S E+
Sbjct: 4 YGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGAR-----QASSPAEVCAAC 58
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
+ ++ +A + + ++ + G ID + + + A+ A+G
Sbjct: 59 DI---TIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR 115
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
++ VSG + A G ++ G+ + + P F L
Sbjct: 116 FLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAAL 154
Score = 31.0 bits (71), Expect = 0.87
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 351 WVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFL 410
+GE G G +K+V N I M + E L G+ + + E + G + + +
Sbjct: 160 HLGEVGQGARMKLVVNMIMGQMMTALGEGMALGR-NCGL---DGGQLLEVLDAGAMANPM 215
Query: 411 IE 412
+
Sbjct: 216 FK 217
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R geobacter metallireducens; HET: NAP;
2.07A {Geobacter metallireducens}
Length = 287
Score = 73.0 bits (180), Expect = 1e-14
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
G IGL +MG + N+ G +V +NR+ K + A A+ A + E+V++
Sbjct: 4 FGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAE-----RAATPCEVVESC 58
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
++ +A ++ ++ + +G +D + + R A+ AKG
Sbjct: 59 P---VTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR 115
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
++ VSG + A G ++ G+ + P F+K+
Sbjct: 116 FLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKM 154
Score = 29.4 bits (67), Expect = 2.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHL 382
+G+ G G +K+V N + G M CE L
Sbjct: 161 LGDVGKGAEMKLVVNMVMGGMMACFCEGLAL 191
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain
enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Length = 301
Score = 73.0 bits (180), Expect = 2e-14
Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 12/165 (7%)
Query: 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLE 60
M IG IGL MG+ + +N+ G TV A++ A V + +A A+ + +
Sbjct: 1 MEKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQ-----ACENNQ 55
Query: 61 ELVKNLKKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKAL 117
++ + + V+ + ++ + G +I+D + T + +K
Sbjct: 56 KVAAASD---IIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVA 112
Query: 118 EAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
KG+ YV VSGG GA G ++M G + A + ++P+ +
Sbjct: 113 AEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVI 157
Score = 32.2 bits (74), Expect = 0.31
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAV 397
VG+ GAG VK+V+N + +M + EA L G+ + M +
Sbjct: 164 VGDTGAGDAVKIVNNLLLGCNMASLAEALVLGV-KCGLKPETMQEI 208
>3qha_A Putative oxidoreductase; seattle structural genomics center for
infectious disease, S mycobacterium avium 104, rossmann
fold; 2.25A {Mycobacterium avium}
Length = 296
Score = 71.9 bits (177), Expect = 4e-14
Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 10/154 (6%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IGL MG + M + V Y+ + A A S+ ++
Sbjct: 18 LGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGAT-----LADSVADVAAA- 71
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
+ + V + V + + +L + G +I ++ L+A+ + V
Sbjct: 72 ---DLIHITVLDDAQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVD 128
Query: 127 CGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159
VSGG A G + M G + + +KP F+
Sbjct: 129 APVSGGAAAAARGELATMVGADREVYERIKPAFK 162
Score = 33.0 bits (76), Expect = 0.19
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAV 397
GE GAG +K+ N + + CEA L A G+ + V
Sbjct: 171 AGEPGAGTRMKLARNMLTFTSYAAACEAMKLAE-AAGLDLQALGRV 215
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A
{Homo sapiens}
Length = 316
Score = 71.9 bits (177), Expect = 4e-14
Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
IG +GL +MG ++ N+ G TV +NRT K D F+ A+ + E+V
Sbjct: 33 IGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAR-----LGRTPAEVVSTC 87
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
V A D + ++ + G +D + ++ + ++G
Sbjct: 88 DI---TFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGR 144
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
++ VSG + + G ++ G+ + FQ +
Sbjct: 145 FLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAM 183
Score = 29.9 bits (68), Expect = 1.6
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHL 382
+GE G + ++ N ++ M I E L
Sbjct: 190 LGEVGNAAKMMLIVNMVQGSFMATIAEGLTL 220
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate
dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A
{Arabidopsis thaliana}
Length = 310
Score = 71.9 bits (177), Expect = 4e-14
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G +GL +MG+ + +N+ +GF V +NRT +K D + + A S E++K
Sbjct: 24 VGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGAS-----VCESPAEVIKKC 78
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
K + ++ A + ++ + +G ID + + + + ++A+ KG
Sbjct: 79 KY---TIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR 135
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
+V VSG + A G ++ G+ A + P F L
Sbjct: 136 FVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVL 174
Score = 29.5 bits (67), Expect = 2.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHL 382
+G+ G G +K++ N I M E L
Sbjct: 181 LGQVGNGAKMKLIVNMIMGSMMNAFSEGLVL 211
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
3q3c_A*
Length = 302
Score = 70.3 bits (173), Expect = 1e-13
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
I IGL MG + N+ G+ + ++ + VD +A A A S + V+
Sbjct: 6 IAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGAS-----AARSARDAVQGA 60
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
V+ ++ A V+ D L+ + G ++++ + A +GL
Sbjct: 61 D---VVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLA 117
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
+ VSGG GA G + M GG+ A +P+F+ +
Sbjct: 118 MLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAM 156
Score = 31.8 bits (73), Expect = 0.48
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAV 397
G GAG K+ +N + M EA L A G+ ++ +
Sbjct: 163 AGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGV-ANGLEAKVLAEI 207
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics,
structural genomics consortium, SGC, oxidoreductase;
2.38A {Homo sapiens} PDB: 2i9p_A*
Length = 296
Score = 70.0 bits (172), Expect = 2e-13
Identities = 31/159 (19%), Positives = 66/159 (41%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IGL MG + N+ HG+ ++ Y+ F + S ++ +
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQ-----VVSSPADVAEKA 57
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
R++ ++ + + ++ ++KG ++ID + + +K +E G +
Sbjct: 58 D---RIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAV 114
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
++ VSGG AR G + M GG + A + + +
Sbjct: 115 FMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCM 153
Score = 29.9 bits (68), Expect = 2.0
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAV 397
G G G K+ +N + M EA +L LG+ ++ +
Sbjct: 160 CGAVGTGQAAKICNNMLLAISMIGTAEAMNLGI-RLGLDPKLLAKI 204
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism,
tartaric acid, target 11128H, NYSGXRC, PSI-2, structural
genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Length = 303
Score = 69.5 bits (171), Expect = 2e-13
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 11/157 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G++GL MG + G + + + LA A G A S E +
Sbjct: 10 VGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGA----AASAREFAGVV 65
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
+++LV + V + D + L++ G ++ D + AL A L
Sbjct: 66 D---ALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN 122
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159
+ VSGG A G ++M G+ AA+ LKP+
Sbjct: 123 MLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLD 159
Score = 29.1 bits (66), Expect = 2.8
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 353 GEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAV 397
GAG VK++H + + EA L G+ D M V
Sbjct: 170 DTPGAGSTVKIIHQLLAGVHIAAAAEAMALAA-RAGIPLDVMYDV 213
>1yb4_A Tartronic semialdehyde reductase; structural genomics,
oxidoreductase, salmonella typhimurium LT2, PSI, protein
ST initiative; 2.40A {Salmonella typhimurium}
Length = 295
Score = 67.6 bits (166), Expect = 1e-12
Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 13/159 (8%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IGL +MG + +N+ G + + + ++ +
Sbjct: 6 LGFIGLGIMGSPMAINLARAGHQLHVTTIGPVADE---LLSLGAV---NVETARQVTEFA 59
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
+ ++V V+D + +G I+D + +T R ++ + G
Sbjct: 60 D---IIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGAD 116
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
Y+ VSGGE GAR G S+M GG + +KP+F L
Sbjct: 117 YLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDIL 155
Score = 28.3 bits (64), Expect = 5.1
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHL 382
VG G G K+ + I +++ + EA
Sbjct: 162 VGGNGDGQTCKVANQIIVALNIEAVSEALVF 192
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine
catabolism, NADP+, structural GEN riken structural
genomics/proteomics initiative; HET: NDP; 1.80A {Thermus
thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Length = 289
Score = 64.9 bits (159), Expect = 7e-12
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 11/153 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+ IGL MG + ++ T+V +NRT K E V
Sbjct: 4 VAFIGLGAMGYPMAGHLARRFPTLV-WNRTFEKALRHQEEFG------SEAVPLERVAEA 56
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
+ + + V + + L P L +G +D + E + + R ++ L KG+ Y+
Sbjct: 57 R---VIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLD 113
Query: 127 CGVSGGEDGARYGP-SLMPGGNPAAWPALKPIF 158
VSGG GA G ++M GG A ++P
Sbjct: 114 APVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL 146
Score = 35.3 bits (82), Expect = 0.038
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAV 397
VG GAGH VK ++N + ++ E + G+S ++ V
Sbjct: 155 VGPVGAGHAVKAINNALLAVNLWAAGEGLLALV-KQGVSAEKALEV 199
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 60.2 bits (146), Expect = 4e-10
Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 12/158 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
+G IG + + G + AY+ +A+ A E + S+ E+
Sbjct: 27 LGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVS---CKASVAEVAGE 83
Query: 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK--GLL 123
+ LV A +A+ + + P L +G + D + +
Sbjct: 84 C---DVIFSLVTAQAAL-EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQ 139
Query: 124 YVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
Y V + L+ G+ A + F
Sbjct: 140 YAAVAVMSAVKPHGHRVPLVVDGDGAR--RFQAAFTLY 175
Score = 31.0 bits (70), Expect = 0.77
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 353 GEQGAGHFVKMVHNGIEYGDMQLICEAYHL 382
GE G +KM + + G L EA
Sbjct: 184 GEVGGAALLKMCRSAVLKGLEALFLEALAA 213
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 57.6 bits (139), Expect = 2e-09
Identities = 21/158 (13%), Positives = 40/158 (25%), Gaps = 10/158 (6%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVV-AYNRTTAKVDSF--LANEAKGTNIIGAHSLEELV 63
I IG Q++ + + AY+ + L A + + +
Sbjct: 27 IAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGIA 86
Query: 64 KNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
V+ LV + P L + ID + + A+
Sbjct: 87 CA----DVVLSLVVGAATKA-VAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGS 141
Query: 124 YVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
+V V ++ G A + L
Sbjct: 142 FVEGAVMARVPPYAEKVPILVAGRRAV--EVAERLNAL 177
Score = 29.1 bits (65), Expect = 3.7
Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 5/52 (9%)
Query: 353 GEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKG 404
G +KM+ + + G L+ EA + + + +
Sbjct: 186 ETPGQASSLKMIRSVMIKGVEALLIEAL-----SSAERAGVTERILDSVQET 232
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 6e-07
Identities = 85/613 (13%), Positives = 167/613 (27%), Gaps = 222/613 (36%)
Query: 19 LILNMNDHG-----FTVVAYNRTTAKV--DSFLANEAKGTNIIGAH----SLEELVKNLK 67
L L+ HG V + A + F + T A + ELV
Sbjct: 9 LTLS---HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG--- 62
Query: 68 KPRRVMMLVKAGSAVDDFIDKLVPLLEKGD------IIIDGGNSEY-QDTD--------- 111
+ + ++ LV + G + + + Y + D
Sbjct: 63 ---KFL----------GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 112 --RRSKALEAKGLL---YVGCGVSGGEDGARYGPSLMP--------------G-GNPAAW 151
+ ++ K L+ ++ + +L G GN +
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 152 PALKPIFQKLNPSFETSAPTPKP--QRDKKEFLENIRQALYASKIVSYAQGFMLMR---- 205
F++L ++T + + E IR L A K+ + QG ++
Sbjct: 170 ------FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV--FTQGLNILEWLEN 221
Query: 206 -----------------------QAA------EIHGWKLNYGGIALMWRG--GC---IIR 231
Q A ++ G+ G + +G G ++
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF--TPGELRSYLKGATGHSQGLVT 279
Query: 232 SVFL--GNIKAAFDKN--PALSNLLLDPFFKDAI--HATQSSWRAVVSQSALL------- 278
+V + + +F + A++ L FF I ++ + S L
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVL----FF---IGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 279 GIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYE-------LLAAPGKFVHTNW 331
G+P+P + L +Q + +H L+ V
Sbjct: 333 GVPSPMLSI----------SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV---V 379
Query: 332 TGH-----GGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQL--------ICE 378
+G G N K + D Q + I + + +L +
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLD----Q----------SRIPFSERKLKFSNRFLPVAS 425
Query: 379 AYH--LMTGALGMSHDEMSAVFEDWNKGELDS--FLIEITKDILKFKDTDGAPLVEKIKD 434
+H L+ A + + ++ +N ++ + D+ + +V+ I
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI-- 483
Query: 435 YAGQKGTGK---WTAISA------LDYGVPVTLIGESVFSRCLSSLFDERQK-------- 477
W + LD+G P G L L R K
Sbjct: 484 ------IRLPVKWETTTQFKATHILDFG-PGGASG-------LGVLTH-RNKDGTGVRVI 528
Query: 478 -ASQVLQGPNPTY 489
A + P+ Y
Sbjct: 529 VAGTLDINPDDDY 541
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 47.8 bits (113), Expect = 2e-06
Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 12/170 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVA-YNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
I LIG + NL + GF +V Y+RT A+ L E+
Sbjct: 13 IVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESAREL----AQKVEAEYTTDLAEVNPY 68
Query: 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125
++ ++ SA + + +V + +++ + + + G+ Y
Sbjct: 69 ----AKLYIVSLKDSAFAELLQGIVEGKREEALMVHT--AGSIPMNVWEGHVPHYGVFYP 122
Query: 126 GCGVSGGEDGARYG-PSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKP 174
S + P + + LK I L+ + +
Sbjct: 123 MQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVYDADSEQRK 172
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 46.5 bits (110), Expect = 9e-06
Identities = 26/151 (17%), Positives = 43/151 (28%), Gaps = 14/151 (9%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IG + Q L + G VV + A + EE V +
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVG-----VTETSEEDVYSC 57
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
V+ V G A+ + I +D N + S +E G +V
Sbjct: 58 ---PVVISAVTPGVALGAARRAGRHV---RGIYVDINNISPETVRMASSLIEKGG--FVD 109
Query: 127 CGVSGGEDGARYG-PSLMPGGNPAAWPALKP 156
+ G + G + + L
Sbjct: 110 AAIMGSVRRKGADIRIIASGRDAEEFMKLNR 140
Score = 29.2 bits (65), Expect = 2.9
Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 6/106 (5%)
Query: 305 LQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQ-GAGHFVKM 363
L + + A + G + +G + G + G +KM
Sbjct: 101 LIEKGGFVDAAIMGSVRRKGADIRIIASGRDAEEFMKLNRYGLNIEVRGREPGDASAIKM 160
Query: 364 VHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSF 409
+ + G L+ E V E E + F
Sbjct: 161 LRSSYTKGVSALLWETL-----TAAHRLGLEEDVLEMLEYTEGNDF 201
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 8e-05
Identities = 66/466 (14%), Positives = 121/466 (25%), Gaps = 161/466 (34%)
Query: 57 HSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDI--IIDGGNSEYQDTDRRS 114
+ V N D D +L K +I II ++ T R
Sbjct: 24 VFEDAFVDNFD--------------CKDVQDMPKSILSKEEIDHIIMSKDAVSG-TLRLF 68
Query: 115 KALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAW------PALKPIF--QKLNPSFE 166
L +K V V Y LM + P++ ++ + +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLR-INY-KFLM-----SPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 167 TSAPTPKPQRDKKEFLENIRQALY----ASKIVSYAQGFMLMRQAAEIHGWKLNYGGIAL 222
+ K + + +RQAL A ++ I G
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--------------IDG---------- 157
Query: 223 MWRGGCIIRSVFLGNIK---AAFDKNPALSNLLLDPFFKDAIH----ATQSSWRAVVSQ- 274
+ G G K A + + I +S V+
Sbjct: 158 V--LGS-------G--KTWVAL----DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 275 SALLGIPTPAFATALAFYDGYRSKRLPANLLQAQ-RDYFGAHTYE--LLAAPGKFVHTN- 330
LL P + + D + +L + +QA+ R + YE LL V N
Sbjct: 203 QKLLYQIDPNWTSRS---DHSSNIKLRIHSIQAELRRLLKSKPYENCLL------VLLNV 253
Query: 331 WTGHGGNSIAA-KVGSEPCC------------DWVGEQGAGHFVKMVHNGIEYGDMQLIC 377
+ A + C D++ H + + H+
Sbjct: 254 QN---AKAWNAFNLS----CKILLTTRFKQVTDFLSAATTTH-ISLDHH----------- 294
Query: 378 EAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLV-----EKI 432
++ ++ DE+ ++ + ++ L + P E I
Sbjct: 295 --------SMTLTPDEVKSLLLKY---------LDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 433 KDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSL-FDERQK 477
+D K L ++ L+ L E +K
Sbjct: 338 RDGLATWDNWKHVNCDKL----------TTIIESSLNVLEPAEYRK 373
Score = 44.5 bits (104), Expect = 8e-05
Identities = 70/415 (16%), Positives = 116/415 (27%), Gaps = 141/415 (33%)
Query: 19 LIL-NMND----HGF-----TVVAYNRTT--AKVDSFLANEAKGTNIIGAHSLEELVKNL 66
L+L N+ + + F ++ TT +V FL + A T+I SL+ L
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILL----TTRFKQVTDFL-SAATTTHI----SLDHHSMTL 298
Query: 67 KKPRRVMMLVK-AGSAVDDF---IDKLVPLLEK--GDIIIDG----GNSEYQDTDRRSKA 116
+L+K D + P + I DG N ++ + D+ +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 117 LEA--KGL-------LYVGCGVSGGEDGARYGPSLMPGGN-PAA-----WPALKP----- 156
+E+ L ++ V P + P W +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSV------------FPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 157 IFQKL-NPS------FETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAE 209
+ KL S E++ P + K LEN AL+ S + Y
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-EYALHRSIVDHY-------NIPKT 458
Query: 210 IHGWKL------NYGGIALMWRGGCIIRSVFLG----NIKAAFDKNPALSNLLLD-PFFK 258
L Y +G NI+ ++ + LD F +
Sbjct: 459 FDSDDLIPPYLDQY----FYS---------HIGHHLKNIEHP-ERMTLFRMVFLDFRFLE 504
Query: 259 DAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYE 318
I ++W A S L L FY Y P YE
Sbjct: 505 QKIRHDSTAWNASGSILNTL--------QQLKFYKPYICDNDP--------------KYE 542
Query: 319 -LLAAPGKFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGD 372
L+ A F+ N I + D + M + + +
Sbjct: 543 RLVNAILDFLPK----IEENLICS-----KYTDLL------RIALMAEDEAIFEE 582
Score = 36.0 bits (82), Expect = 0.033
Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 33/123 (26%)
Query: 379 AYHLMTGALGMSHDEMSAVFED--WNKGEL---------DSFLIEITKDILKFKD--TDG 425
+HL VF D + + ++ ++ + + +K D
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 426 AP----LVEKIKDYAGQKGT----GKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQK 477
P LV I D+ + K+T + + + L+ E ++F+E K
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDL------LRIALMAED------EAIFEEAHK 585
Query: 478 ASQ 480
Q
Sbjct: 586 QVQ 588
Score = 31.4 bits (70), Expect = 0.93
Identities = 49/338 (14%), Positives = 76/338 (22%), Gaps = 125/338 (36%)
Query: 230 IRSVFLGNIKAAFDKN-------PALSN---------------------LLLDP------ 255
I SVF FD LS LL
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 256 -FFKDAIHAT----QSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRD 310
F ++ + S + Q P+ T + Y R + N Q
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQ--------PSMMTRM--YIEQRDRLY--NDNQVFAK 128
Query: 311 YF----------GAHTYELLAAPGKFVHTNWTGHGG---NSIAAKVGSEPCCD------- 350
Y EL A + G G +A V C
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLID----GVLGSGKTWVALDV----CLSYKVQCKM 180
Query: 351 -----W--VGEQGAGH---------FVKMVHNGIEYGD-MQLICEAYHLMTGAL-----G 388
W + + ++ N D I H + L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 389 MSHDEMSAVFED-WNKGELDSF------LIEITK-----DILKFKDTDGAPLVEKIKDYA 436
++ V + N ++F L+ T+ D L T L
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 437 GQKGTG---KWTAISALD------YGVP--VTLIGESV 463
+ K+ D P +++I ES+
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 42.3 bits (99), Expect = 1e-04
Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 24/167 (14%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G++G ++L + GF VV +R + + A+ T A S E++
Sbjct: 31 VGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVI--- 87
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGN-SEYQDTDRRSKALEAKGLLYV 125
+ L G I++D N +E + R E L+
Sbjct: 88 -------FVAVFREHYSSLCSLSDQL--AGKILVDVSNPTEQEHLQHRESNAEYLASLFP 138
Query: 126 GCGVSGG---------EDGARYGPS--LMPGGNPAAWPALKPIFQKL 161
C V + G R G + G P A A+ + +
Sbjct: 139 TCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAM 185
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 39.3 bits (91), Expect = 0.002
Identities = 13/98 (13%), Positives = 34/98 (34%), Gaps = 11/98 (11%)
Query: 7 IGLIGLA-VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
+ ++G MG + ++D + A D + G I + +
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRL---QGMG---IPLTDGDGWI-- 65
Query: 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGG 103
+ V++ + ++ + +VP + G I++
Sbjct: 66 -DEADVVVLALPDN-IIEKVAEDIVPRVRPGTIVLILD 101
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 36.6 bits (84), Expect = 0.009
Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 3/155 (1%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+ + G G++L L M G++VV +R L A+ A S +++
Sbjct: 22 VCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSL-LPRGAEVLCYSEAASRSDVIVLA 80
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
L + ++ + V +K + + + ++A +
Sbjct: 81 VHREHYDFLAELADSLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHVVKAFNTISAW 140
Query: 127 CGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
SG D +R + G + A + I + L
Sbjct: 141 ALQSGTLDASRQVF--VCGNDSKAKDRVMDIARTL 173
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma
volcanium}
Length = 144
Score = 34.0 bits (79), Expect = 0.041
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 9 LIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKK 68
L+G ++ + + + V R V + A + + + ++ +K
Sbjct: 26 LVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRA-FAEKYEYE----YVLINDIDSLIKN 80
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 32.1 bits (72), Expect = 0.33
Identities = 18/170 (10%), Positives = 51/170 (30%), Gaps = 18/170 (10%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+ +G + + + + D +R+ + A A +LE+ +
Sbjct: 5 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDR-----ARNLAEVYGGKAATLEKHPEL- 58
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
V+ ++ + + L ++ G + + + ++
Sbjct: 59 ---NGVVFVIVPDRYIKTVANH--LNLGDAVLVHCSGFLSSEIFKK-----SGRASIHPN 108
Query: 127 CGVSGGEDGARYGPSLMPG--GNPAAWPALKPIFQKLNPSFETSAPTPKP 174
S E ++ G G+ P +K I ++++ + K
Sbjct: 109 FSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPSEKKK 158
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 31.7 bits (71), Expect = 0.40
Identities = 23/157 (14%), Positives = 39/157 (24%), Gaps = 13/157 (8%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
I + G MGQ + N G V Y + +L L K
Sbjct: 22 ITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQAT----TLGEIVIMAVPYPALAALAKQY 77
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
G V D + L ++ ++ + + + K
Sbjct: 78 AT-------QLKGKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTF 130
Query: 127 CGV--SGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
SG +G L+ G + +A
Sbjct: 131 AATLQSGQVNGKEPTTVLVAGNDDSAKQRFTRALADS 167
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A
{Actinobacillus pleuropneumoniae serovaorganism_taxid}
PDB: 3q3h_A* 3q3i_A
Length = 631
Score = 31.8 bits (72), Expect = 0.56
Identities = 6/29 (20%), Positives = 8/29 (27%), Gaps = 1/29 (3%)
Query: 445 TAISALDYGVPV-TLIGESVFSRCLSSLF 472
I + G+ G V LF
Sbjct: 533 GIIDMVTLGLVGVCKTGAEVHEHIDEGLF 561
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.70
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 6/29 (20%)
Query: 258 KDAIHATQSSWRAVVSQSALLGIPTPAFA 286
K A+ Q+S + SA PA A
Sbjct: 19 KQALKKLQASLKLYADDSA------PALA 41
Score = 29.9 bits (66), Expect = 1.1
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 28/57 (49%)
Query: 111 DRRS-KALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFE 166
++++ K L+A LY +D A PAL + + E
Sbjct: 18 EKQALKKLQASLKLY-------ADDSA---------------PAL-----AIKATME 47
Score = 28.4 bits (62), Expect = 3.3
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 12/30 (40%)
Query: 236 GNIKA-AFDKNPALSNLLLDPFFKDAIHAT 264
++K A D PAL AI AT
Sbjct: 27 ASLKLYADDSAPAL-----------AIKAT 45
Score = 27.6 bits (60), Expect = 6.9
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 155 KPIFQKLNPSFETSAPTPKP 174
K +KL S + A P
Sbjct: 19 KQALKKLQASLKLYADDSAP 38
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A
{Escherichia coli}
Length = 387
Score = 30.5 bits (70), Expect = 1.2
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGG 103
L+ L K LK+P R M+ + GS V + L L + D +I GG
Sbjct: 171 LDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGG 215
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: ADP;
2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Length = 395
Score = 30.1 bits (69), Expect = 1.5
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGG 103
++ L K LK P++ M + GS V + L LL+K +I+I GG
Sbjct: 174 IQALEKALKSPKKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGG 218
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP
kinase, aspartokinase fold, pyrimidine nucleotide
synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus
solfataricus} PDB: 2j4k_A* 2j4l_A*
Length = 226
Score = 29.7 bits (67), Expect = 1.9
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 78 AGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD----RRSKALEAKGLLYV 125
A V +++ + G +++ GG Q T ++A +K L+
Sbjct: 87 AYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVA 138
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A
{Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A*
2br5_A* 2br4_A* 2br3_A*
Length = 236
Score = 29.4 bits (65), Expect = 2.2
Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 10/106 (9%)
Query: 42 SFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIID 101
+IG + + L + G D + + + I ID
Sbjct: 101 DLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQ-GDCSDLTTFEHLREMAHPLIFID 159
Query: 102 GGNSEYQDTDRR--SKALEAKGLLYVGCGVSGGEDGARYGPSLMPG 145
++ + + LE + ED Y P
Sbjct: 160 NAHANTFNIMKWAVDHLLEEGDYFII-------EDMIPYWYRYAPQ 198
>2ij9_A Uridylate kinase; structural genomics, protein structure
initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus}
SCOP: c.73.1.3
Length = 219
Score = 28.9 bits (65), Expect = 2.8
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD----RRSKALEAKGLLYV 125
+ A V + L + +++ GG TD ++ ++A +
Sbjct: 81 IPSAAKKVPVDFMEAEELSKLYRVVVMGGTFPGHTTDATAALLAEFIKADVFINA 135
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus
pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 29.0 bits (66), Expect = 3.4
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
IG+IG+ M +I + ++ + + A+ + A S ++L+
Sbjct: 6 IGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEI----AEQLALPYAMSHQDLIDQ 60
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 29.1 bits (64), Expect = 3.8
Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 9/133 (6%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEE 61
A + ++G + + + + D G V RT A T I +
Sbjct: 2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAA 61
Query: 62 LVKNLKKPRRVMMLVKAGSAVDDFIDKLV--PLLEKGDIIIDGGNSEYQDTDRRSKALEA 119
L + K V+ S + V + + ++ + A +A
Sbjct: 62 LDAEVAKHDLVI------SLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDA 115
Query: 120 KGLLYVGCGVSGG 132
+ G+ G
Sbjct: 116 GITVMNEIGLDPG 128
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 28.3 bits (64), Expect = 4.8
Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 20/103 (19%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKN 65
IG++GL ++G +L ++ G ++ +R + + +A ++ A L++
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCE-----KAVERQLVDEAGQDLSLLQT 57
Query: 66 -----LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGG 103
L P + + ++KL+P L I+ D
Sbjct: 58 AKIIFLCTP------I---QLILPTLEKLIPHLSPTAIVTDVA 91
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP:
b.42.6.1
Length = 187
Score = 28.0 bits (62), Expect = 4.9
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 10/50 (20%)
Query: 380 YHLMTGALGMSHD----------EMSAVFEDWNKGELDSFLIEITKDILK 419
HL TG SH E+SA + D + + D
Sbjct: 78 KHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVICNGDEWL 127
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP
complex, calcium stimulation, RECA, DMC1; HET: DNA ANP;
1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11
PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A*
3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A*
3etl_A* 4dc9_A* 2gdj_A*
Length = 322
Score = 28.4 bits (63), Expect = 5.2
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 12 LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN---LKK 68
L L + V+ N+ +AK D+F IG H + ++K
Sbjct: 234 LGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGM---AEQAIGGHIVGHAATFRFFVRK 290
Query: 69 PR---RVMMLVKA 78
+ RV L +
Sbjct: 291 GKGDKRVAKLYDS 303
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine
synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus
KT}
Length = 432
Score = 28.4 bits (63), Expect = 5.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 50 GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFI 86
G I+ S +++ +K R M +VK G V + I
Sbjct: 290 GMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVI 326
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 28.1 bits (62), Expect = 5.5
Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 6/104 (5%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL---- 62
I ++G +G+ + + D G V R + +A G E
Sbjct: 22 IAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHL 81
Query: 63 --VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGN 104
++ +++ G++ + G I++D N
Sbjct: 82 AAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIAN 125
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 28.4 bits (63), Expect = 5.7
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 12 LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN---LKK 68
LA +L N + V N+ A+ D+F + + IG H L L+K
Sbjct: 261 LAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRP---IGGHILAHSATLRVYLRK 317
Query: 69 PR---RVMMLVKA 78
+ R+ L+ A
Sbjct: 318 GKGGKRIARLIDA 330
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle
pigment, heme, bilirubin, NADH; 1.20A {Rattus
norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A
2h63_A*
Length = 294
Score = 28.3 bits (63), Expect = 6.0
Identities = 7/59 (11%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
+ ++G+ G + ++ D + E + + SLE+ +++
Sbjct: 10 VVVVGVGRAGSVRLRDLKDPRSAAFL-----NLIGFVSRRELGSLDEVRQISLEDALRS 63
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure
initiative, PSI, alpha-beta-alpha sandwich; HET: RIP;
1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Length = 223
Score = 28.0 bits (62), Expect = 6.5
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 53 IIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIII 100
++G + E VK + + R +LV AG + I + V L K I +
Sbjct: 127 VVGEEEIAEAVKAVSRLHRAEVLVLAGGIMGGKITEEVKKLRKSGIRV 174
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics;
1.70A {Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 28.1 bits (63), Expect = 6.8
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 7 IGLIGLAVMGQNLILNMNDH-GFTVVA-YNRTTAKVDSFLANEAKGTNIIGAHSLEELVK 64
+ IGL + +V Y+RT K + F K N G ++E L+
Sbjct: 8 VAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKF----GKRYNCAGDATMEALLA 63
Query: 65 N 65
Sbjct: 64 R 64
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ;
2.0A {Escherichia coli} SCOP: e.22.1.2
Length = 408
Score = 28.0 bits (63), Expect = 7.2
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 51 TNII-GAHSLEELVKNLKKPRRVMMLVKAGSAVDD-FIDKLVPLLEKGDIIIDGG 103
T I+ G ++ L + + RV++ GS +D+++ L+ D++ GG
Sbjct: 31 TRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGG 85
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 27.8 bits (61), Expect = 8.3
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 24/136 (17%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVA-YNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
+GLIG +G+ L + +GF + A + ++E
Sbjct: 3 VGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEKMV-------------RGIDEF--- 46
Query: 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSK----ALEAKG 121
L++ V + + AV D+ +L+ G +I + D D S+ +
Sbjct: 47 LQREMDVAVEAASQQAVKDYA---EKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGR 103
Query: 122 LLYVGCGVSGGEDGAR 137
+Y+ G GG D
Sbjct: 104 RVYIASGAIGGLDAIF 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0852 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,726,274
Number of extensions: 484690
Number of successful extensions: 1411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1354
Number of HSP's successfully gapped: 101
Length of query: 490
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 393
Effective length of database: 3,993,456
Effective search space: 1569428208
Effective search space used: 1569428208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)