RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9637
(490 letters)
>d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase
(6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]}
Length = 297
Score = 237 bits (605), Expect = 2e-75
Identities = 127/214 (59%), Positives = 143/214 (66%), Gaps = 4/214 (1%)
Query: 126 GCGVSGGEDGARYG---PSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFL 182
G G YG + +LK + + + P DKK FL
Sbjct: 85 GTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNIPFEG-DKKSFL 143
Query: 183 ENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAF 242
E+IR+ALYASKI+SYAQGFML+RQAA GW LNYGGIALMWRGGCIIRSVFLG IK AF
Sbjct: 144 EDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAF 203
Query: 243 DKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPA 302
D+NP L NLLLD FFK A+ Q SWR +S GIP P F TAL+FYDGYR LPA
Sbjct: 204 DRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAMLPA 263
Query: 303 NLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGG 336
NL+QAQRDYFGAHTYELLA PG+F+HTNWTGHGG
Sbjct: 264 NLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGG 297
Score = 196 bits (500), Expect = 8e-60
Identities = 100/133 (75%), Positives = 112/133 (84%)
Query: 356 GAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITK 415
GAGHFVKMVHNGIEYGDMQLICEAYHLM LG+ H EM+ FE+WNK ELDSFLIEIT
Sbjct: 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITA 60
Query: 416 DILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDER 475
ILKF+D DG L+ KI+D AGQKGTGKWTAISAL+YGVPVTLIGE+VF+RCLSSL DER
Sbjct: 61 SILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDER 120
Query: 476 QKASQVLQGPNPT 488
+AS+ L+GP
Sbjct: 121 IQASKKLKGPQNI 133
>d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase
(6PGD) {Trypanosoma brucei [TaxId: 5691]}
Length = 300
Score = 187 bits (477), Expect = 2e-56
Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 2/134 (1%)
Query: 356 GAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDW-NKGELDSFLIEIT 414
GAG VKM HN EY +Q+ E + ++ +G+++DE++AV EDW +K L S++++I+
Sbjct: 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRA-MGLNNDEVAAVLEDWKSKNFLKSYMLDIS 59
Query: 415 KDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDE 474
+ KD DG+ L E + D G KGTG W+A AL+ GVP + +V SR + E
Sbjct: 60 IAAARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTE 119
Query: 475 RQKASQVLQGPNPT 488
RQ + G +
Sbjct: 120 RQANASNAPGITQS 133
Score = 187 bits (475), Expect = 3e-56
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 3/175 (1%)
Query: 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218
++ T K + ++ + ++ + I YAQ F +R+ ++H + LN
Sbjct: 125 SNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLP 184
Query: 219 GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALL 278
+R GCI++ L + AF+KNP +SNL+ F + Q+ V ++ L
Sbjct: 185 ATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMCA-FQTEIRAGLQNYRDMVALITSKL 243
Query: 279 GIPTPAFATALAFYDGYRSKRLP-ANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332
+ P + +L + + L L+ QRD FG H YE + G+ W
Sbjct: 244 EVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRE-SFQWP 297
>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep
(Ovis orientalis aries) [TaxId: 9940]}
Length = 176
Score = 112 bits (280), Expect = 1e-29
Identities = 121/168 (72%), Positives = 140/168 (83%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
A+ DI LIGLAVMGQNLILNMNDHGF V A+NRT +KVD FLANEAKGT ++GAHSLEE+
Sbjct: 1 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEM 60
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V LKKPRR+++LVKAG AVD+FI+KLVPLL+ GDIIIDGGNSEY+DT RR + L+ KG+
Sbjct: 61 VSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI 120
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAP 170
L+VG GVSGGEDGARYGPSLMPGGN AWP +K IFQ + T P
Sbjct: 121 LFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEP 168
Score = 28.8 bits (63), Expect = 1.2
Identities = 14/19 (73%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Query: 337 NSIAAKVGS-EPCCDWVGE 354
IAAKVG+ EPCCDWVG+
Sbjct: 157 QGIAAKVGTGEPCCDWVGD 175
>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase
{Trypanosoma brucei [TaxId: 5691]}
Length = 178
Score = 101 bits (251), Expect = 1e-25
Identities = 68/159 (42%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Query: 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKG---TNIIGAHSLEEL 62
D+G++GL VMG NL LN+ + GF V +NRT +K + F+ A N+ ++E
Sbjct: 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
+LKKPR+ ++LV+AG+A D I++L + EKGDI++D GN+ ++D RR++ LEA GL
Sbjct: 63 AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGL 122
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
++G G+SGGE+GAR GP+ PGG + W ++PI +
Sbjct: 123 RFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAA 161
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 87.9 bits (217), Expect = 3e-21
Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IGL +MG+ + N+ G+++V +R + +A A+ + A
Sbjct: 3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAI--------A 54
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
++ ++ ++ V + + ++ + G ++ID + + S AL+AKG+
Sbjct: 55 EQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVE 114
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
+ VSGGE A G S+M GG+ A + + + +
Sbjct: 115 MLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAM 153
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 88.0 bits (217), Expect = 4e-21
Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 6/156 (3%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
I IGL MG + N+ G+ + ++ + VD A S + V+
Sbjct: 4 IAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGL-----VAAGASAARSARDAVQGA 58
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
++ + + D L+ + G ++++ + A +GL +
Sbjct: 59 DVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLD 118
Query: 127 CGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
VSGG GA G + M GG+ A +P+F+ +
Sbjct: 119 APVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAM 154
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 156
Score = 71.9 bits (175), Expect = 1e-15
Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 11/153 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+ IGL MG + ++ T+V +NRT K + + ++
Sbjct: 3 VAFIGLGAMGYPMAGHLARRFPTLV-WNRTFEKALRHQEEFGSEAVPLERVAEARVIFTC 61
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
R + V +D + E + + R ++ L KG+ Y+
Sbjct: 62 LPTTREVYEVAEALYPYLREG---------TYWVDATSGEPEASRRLAERLREKGVTYLD 112
Query: 127 CGVSGGEDGARYGP-SLMPGGNPAAWPALKPIF 158
VSGG GA G ++M GG A ++P
Sbjct: 113 APVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL 145
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 55.6 bits (133), Expect = 6e-10
Identities = 29/157 (18%), Positives = 46/157 (29%), Gaps = 19/157 (12%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IG + Q L + G VV + + + + EE V +
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPST-----IERARTVGVTETSEEDVYS- 56
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
V+ V G A+ I +D N + S +E G +V
Sbjct: 57 --CPVVISAVTPGVALGAARR---AGRHVRGIYVDINNISPETVRMASSLIEKGG--FVD 109
Query: 127 CGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP 163
+ G ++ G A F KLN
Sbjct: 110 AAIMGSVRRKGADIRIIASGRDAE------EFMKLNR 140
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 40.1 bits (92), Expect = 2e-04
Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 15/163 (9%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
IG++GL ++G +L ++ G ++ +R + A E + + G + L
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQ--QSTCEKAVERQLVDEAGQD-----LSLL 55
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
+ + + + + + L + G +
Sbjct: 56 QTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMA 115
Query: 127 CGVSGGEDGARYGP--------SLMPGGNPAAWPALKPIFQKL 161
+ G DGA + +P L+ + + L
Sbjct: 116 GTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPL 158
>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga
maritima [TaxId: 2336]}
Length = 153
Score = 37.7 bits (86), Expect = 0.001
Identities = 11/156 (7%), Positives = 41/156 (26%), Gaps = 16/156 (10%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+ +G + + + + D +R+ + + ++
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVY---------GGKAATLEKH 52
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
+ V+ ++ + + L +++ + ++S
Sbjct: 53 PELNGVVFVIVPDRYIKTVANHLNL---GDAVLVHCSGFLSSEIFKKSGRASIH---PNF 106
Query: 127 CGVSGGEDGARY-GPSLMPGGNPAAWPALKPIFQKL 161
S + G+ P +K I +++
Sbjct: 107 SFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEI 142
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 36.4 bits (83), Expect = 0.003
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 12/103 (11%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
++GL G + G +V+A++ ++ +G I L
Sbjct: 4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ---DRGAIIAEGPGLAGTAHPD 60
Query: 67 KKPRRVMMLVKAG---------SAVDDFIDKLVPLLEKGDIII 100
+ + VK + + +G +II
Sbjct: 61 LLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLII 103
>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 132
Score = 32.4 bits (73), Expect = 0.040
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 356 GAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWN 402
GAGH VK ++N + ++ E + G+S ++ V +
Sbjct: 2 GAGHAVKAINNALLAVNLWAAGEGLLALV-KQGVSAEKALEVINASS 47
>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 32.4 bits (73), Expect = 0.040
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 356 GAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVF 398
GAG K+ +N + M EA L A G+ ++ +
Sbjct: 3 GAGQVAKVCNNQLLAVLMIGTAEAMALGV-ANGLEAKVLAEIM 44
>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 133
Score = 31.6 bits (71), Expect = 0.088
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 354 EQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDW 401
+ GAG+ K+ + I ++ + EA L T A G++ D +
Sbjct: 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKA-GVNPDLVYQAIRGG 47
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Streptococcus pyogenes [TaxId: 1314]}
Length = 152
Score = 30.0 bits (66), Expect = 0.30
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSF 43
IG+IG+ M +I + ++ + +
Sbjct: 3 IGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEI 39
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 29.1 bits (64), Expect = 0.92
Identities = 7/68 (10%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+ ++G+ G + ++ D + E + + SLE+ +++
Sbjct: 10 VVVVGVGRAGSVRLRDLKDPRSAAFL-----NLIGFVSRRELGSLDEVRQISLEDALRSQ 64
Query: 67 KKPRRVMM 74
+ +
Sbjct: 65 EIDVAYIC 72
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
(KARI) {Pseudomonas aeruginosa [TaxId: 287]}
Length = 182
Score = 28.7 bits (64), Expect = 0.99
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+ +IG G N+ D G V R+ + + EA G + + +
Sbjct: 19 VAIIGYGSQGHAHACNLKDSGVDVTVGLRSGS--ATVAKAEAHGLKVADVKTA------V 70
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIII 100
VM+L + +++ P L+KG +
Sbjct: 71 AAADVVMILTPDEFQGRLYKEEIEPNLKKGATLA 104
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 28.5 bits (62), Expect = 1.3
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN 46
+ ++G + + + + D G V RT A
Sbjct: 5 VLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG 44
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA
{Haemophilus influenzae [TaxId: 727]}
Length = 152
Score = 27.9 bits (61), Expect = 1.5
Identities = 17/158 (10%), Positives = 42/158 (26%), Gaps = 27/158 (17%)
Query: 7 IGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
I ++G +G + G+ + +R V +
Sbjct: 12 IVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILA------------------- 52
Query: 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL-- 123
V+++ + + I++L P L + ++ D + + + + + L
Sbjct: 53 ---NADVVIVSVPINLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHTGAVLGLH 109
Query: 124 YVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
+ G P + L Q
Sbjct: 110 PMFGADIASMAKQVV--VRCDGRFPERYEWLLEQIQIW 145
>d2in5a1 b.177.1.1 (A:3-200) Hypothetical lipoprotein YmcC
{Escherichia coli [TaxId: 562]}
Length = 198
Score = 28.4 bits (63), Expect = 1.6
Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 179 KEFLENIRQALYASKIVSYAQGFMLMRQA-AEIHGWKLNYGGIALMWRGGCIIRSVFLGN 237
+ ++ + + ++ + F+++ E W L+ L+ G ++++V L N
Sbjct: 24 DQQIQALPYSTMYLRLNEGQRIFVVLGYIEQEQSKW-LSQDNAMLVTHNGRLLKTVKLNN 82
Query: 238 IKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVS 273
++N DP S W +
Sbjct: 83 ------NLLEVTNSGQDPLRNALAIKDGSRWTRDIL 112
>d1y7pa1 c.23.1.7 (A:79-217) Hypothetical protein AF1403, C-terminal
domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 139
Score = 26.7 bits (59), Expect = 3.5
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 53 IIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIII 100
++G + E VK + + R +LV AG + I + V L K I +
Sbjct: 47 VVGEEEIAEAVKAVSRLHRAEVLVLAGGIMGGKITEEVKKLRKSGIRV 94
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 27.2 bits (59), Expect = 3.7
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 2/99 (2%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
I ++G +GQ + + G V + R S E G+ + + L
Sbjct: 3 ITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLT-ANDPDFL 61
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS 105
+++ +KA V D + L L I+ N
Sbjct: 62 ATSDLLLVTLKA-WQVSDAVKSLASTLPVTTPILLIHNG 99
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 26.2 bits (57), Expect = 5.1
Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 7/101 (6%)
Query: 7 IGLIGLAVMGQNL--ILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-----GAHSL 59
+ +IG+ +G+ L + N V + +
Sbjct: 5 VLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPGVVRLDEFQVPSDVSTVVECASPEAVK 64
Query: 60 EELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIII 100
E ++ LK P +++ + A + F ++ L+ +
Sbjct: 65 EYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARV 105
>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 111
Score = 25.7 bits (56), Expect = 6.5
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 389 MSHDEMSAVFEDWNKGELDSF-LIEITKDILKF 420
+++ F DW+ G D L+ + IL++
Sbjct: 75 GRLEDVLPFFADWDLGWFDIRDLLTRNQLILQY 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,858,252
Number of extensions: 89304
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 34
Length of query: 490
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 401
Effective length of database: 1,185,626
Effective search space: 475436026
Effective search space used: 475436026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)