BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9638
(85 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VHI4|SF3B5_DROME Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster
GN=CG11985 PE=1 SV=1
Length = 85
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 70/85 (82%), Positives = 78/85 (91%)
Query: 1 MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
MG+RYNI+SQLEHLQSKY+GTGHADTTKFEWL N HRDS ASYMGHY++LN F+I ENE+
Sbjct: 1 MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENES 60
Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
KARVRFN MERMLQPCGPPPEK E+
Sbjct: 61 KARVRFNLMERMLQPCGPPPEKLED 85
>sp|Q9BWJ5|SF3B5_HUMAN Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1
Length = 86
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 77/85 (90%)
Query: 1 MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
M DRY I+SQLEHLQSKY+GTGHADTTK+EWLVN HRDSY SYMGH+++LN F+I ENE+
Sbjct: 1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60
Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
KARVRFN ME+MLQPCGPP +KPEE
Sbjct: 61 KARVRFNLMEKMLQPCGPPADKPEE 85
>sp|Q56K13|SF3B5_BOVIN Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1
Length = 86
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 77/85 (90%)
Query: 1 MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
M DRY I+SQLEHLQSKY+GTGHADTTK+EWLVN HRDSY SYMGH+++LN F+I ENE+
Sbjct: 1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60
Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
KARVRFN ME+MLQPCGPP +KPEE
Sbjct: 61 KARVRFNLMEKMLQPCGPPADKPEE 85
>sp|Q923D4|SF3B5_MOUSE Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1
Length = 86
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 66/85 (77%), Positives = 76/85 (89%)
Query: 1 MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
M DRY I+SQLEHLQSKY+GTGHADTTK+EWLVN HRDSY SYMGH+++LN F+I ENE+
Sbjct: 1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60
Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
KARVRFN ME+MLQP GPP +KPEE
Sbjct: 61 KARVRFNLMEKMLQPSGPPADKPEE 85
>sp|P58728|SF3BB_ARATH Uncharacterized protein At4g14342 OS=Arabidopsis thaliana
GN=At4g14342 PE=3 SV=1
Length = 87
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 70/83 (84%)
Query: 3 DRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKA 62
DR+NI SQLEHLQ+KYVGTGHAD ++FEW VNI RDSYASY+GHY ML+ F+I ENE+
Sbjct: 5 DRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIG 64
Query: 63 RVRFNFMERMLQPCGPPPEKPEE 85
R R+NFM++ML PCG PPE+ EE
Sbjct: 65 RERYNFMQKMLLPCGLPPEREEE 87
>sp|Q9LW64|SF3BA_ARATH Uncharacterized protein At3g23325 OS=Arabidopsis thaliana
GN=At3g23325 PE=3 SV=1
Length = 87
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 70/83 (84%)
Query: 3 DRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKA 62
DR+NI SQLEHLQ+KYVGTGHAD ++FEW VNI RDSYASY+GHY ML+ F+I ENE+
Sbjct: 5 DRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIG 64
Query: 63 RVRFNFMERMLQPCGPPPEKPEE 85
R R+NFM++ML PCG PPE+ +E
Sbjct: 65 RERYNFMQKMLLPCGLPPEREDE 87
>sp|Q55BF5|SF3B5_DICDI Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5
PE=3 SV=1
Length = 94
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 63/81 (77%)
Query: 1 MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
M +R ++ SQLEHLQ +YVGTGHAD +K EWL N HRDS +S++GH + L+LFSI ENE+
Sbjct: 1 MSERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENES 60
Query: 61 KARVRFNFMERMLQPCGPPPE 81
RVR+N + +M+ PCGP P+
Sbjct: 61 VGRVRYNTLTKMISPCGPAPK 81
>sp|Q9P7R6|YHV5_SCHPO Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC211.05 PE=3 SV=1
Length = 85
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 1 MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
M DR ++LE LQ++YVG G+A TTK+EW+VN HRD+ +S +GH +L + E
Sbjct: 1 MADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEP 60
Query: 61 KARVRFNFMERMLQPCGPPP 80
+ +VR N +E+M+ PCGPPP
Sbjct: 61 RVQVRKNLLEKMIMPCGPPP 80
>sp|Q09215|YP66_CAEEL Uncharacterized protein B0495.6 OS=Caenorhabditis elegans
GN=B0495.6 PE=4 SV=1
Length = 87
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 2 GDRYNIYSQLEHLQSKYVGTG 22
G+R+++ +QLEHLQSKY GT
Sbjct: 5 GERFHVLAQLEHLQSKYTGTA 25
>sp|P0C074|YSF3_YEAST RDS3 complex subunit 10 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YSF3 PE=1 SV=1
Length = 85
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 15 QSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKAR-VRFNFMERM 72
+ KY+G G TT+ +W N+ D+ + GH L S++ + R R + ++ M
Sbjct: 15 KQKYIGLGDESTTREQWQRNVRNDTLNTLQGHSASLEYVSLSRGDLSIRDTRIHLLKSM 73
>sp|P46922|OPUAC_BACSU Glycine betaine-binding protein OpuAC OS=Bacillus subtilis (strain
168) GN=opuAC PE=1 SV=1
Length = 293
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 19 VGTGHADTTKFEWLVNIHRDSYASYMGHYN 48
+ TG AD + WL N H+ A Y G Y+
Sbjct: 234 IATGSADASLSAWLPNTHKAYAAKYKGKYD 263
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,112,923
Number of Sequences: 539616
Number of extensions: 1221021
Number of successful extensions: 2082
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2071
Number of HSP's gapped (non-prelim): 11
length of query: 85
length of database: 191,569,459
effective HSP length: 56
effective length of query: 29
effective length of database: 161,350,963
effective search space: 4679177927
effective search space used: 4679177927
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)