Query psy9638
Match_columns 85
No_of_seqs 100 out of 138
Neff 4.0
Searched_HMMs 29240
Date Sat Aug 17 00:49:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3o_A Transcription initiatio 52.3 8.6 0.00029 24.1 2.2 25 46-74 25-49 (75)
2 2wl8_A Peroxisomal biogenesis 41.9 7.7 0.00026 26.3 0.8 16 66-82 95-110 (126)
3 2y9u_A Tumor protein 63; apopt 36.3 14 0.00048 22.3 1.3 21 22-42 1-21 (69)
4 1ymm_C MBP peptide, HLA class 26.0 32 0.0011 17.7 1.4 17 67-83 6-22 (26)
5 2kes_A Synphilin-1; synphillin 24.3 32 0.0011 19.9 1.3 15 2-16 25-39 (48)
6 1zj6_A ADP-ribosylation factor 16.9 73 0.0025 19.9 2.0 30 53-82 157-186 (187)
7 2lkw_A Membrane fusion protein 15.0 48 0.0017 16.9 0.6 12 71-82 6-17 (26)
8 2cly_C ATP synthase coupling f 14.6 76 0.0026 20.0 1.5 19 7-28 40-58 (77)
9 1jmx_A Amine dehydrogenase; ox 13.9 21 0.0007 29.4 -1.6 36 18-58 106-141 (494)
10 1ug2_A 2610100B20RIK gene prod 12.6 1.6E+02 0.0054 19.2 2.7 55 14-68 19-77 (95)
No 1
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=52.27 E-value=8.6 Score=24.11 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=20.8
Q ss_pred ChhHHHHHHHhcCchHHHHHHHHHHHhhC
Q psy9638 46 HYNMLNLFSINENEAKARVRFNFMERMLQ 74 (85)
Q Consensus 46 H~~lL~Y~aia~nes~~r~r~~llekM~~ 74 (85)
+++..+|+|.|.-| |+| +||||++.
T Consensus 25 ~~dv~~~iS~a~qe---RLr-~llekl~~ 49 (75)
T 1h3o_A 25 HPDVVSYVSHATQQ---RLQ-NLVEKISE 49 (75)
T ss_dssp CTTHHHHHHHHHHH---HHH-HHHHHHHC
T ss_pred ChhHHHHhHHHHHH---HHH-HHHHHHHH
Confidence 67888999999776 888 89999864
No 2
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=41.89 E-value=7.7 Score=26.35 Aligned_cols=16 Identities=31% Similarity=0.835 Sum_probs=12.4
Q ss_pred HHHHHHhhCCCCCCCCC
Q psy9638 66 FNFMERMLQPCGPPPEK 82 (85)
Q Consensus 66 ~~llekM~~pcgppp~~ 82 (85)
..++++| |-||.||..
T Consensus 95 ~~Lmq~m-Q~~G~PP~e 110 (126)
T 2wl8_A 95 LDLMQQL-QDLGHPPKE 110 (126)
T ss_dssp HHHHHHH-HHTCCCCGG
T ss_pred HHHHHHH-HHcCCCcHH
Confidence 5677787 569999974
No 3
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=36.31 E-value=14 Score=22.30 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=14.4
Q ss_pred CCCCCchHHHHHHhhhHHHHh
Q psy9638 22 GHADTTKFEWLVNIHRDSYAS 42 (85)
Q Consensus 22 G~~dtTk~EW~tn~hRDT~aS 42 (85)
|++|.|-.|||..|.=.-|+.
T Consensus 1 ~~~d~sv~~WLd~i~m~~Y~d 21 (69)
T 2y9u_A 1 GSTDCSIVSFLARLGCSSCLD 21 (69)
T ss_dssp --CCCBHHHHHHTTTCGGGHH
T ss_pred CCCCCcHHHHHHHcCChHHHH
Confidence 789999999999875444443
No 4
>1ymm_C MBP peptide, HLA class II histocompatibility antigen, DR beta; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens}
Probab=25.97 E-value=32 Score=17.72 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=13.7
Q ss_pred HHHHHhhCCCCCCCCCC
Q psy9638 67 NFMERMLQPCGPPPEKP 83 (85)
Q Consensus 67 ~llekM~~pcgppp~~~ 83 (85)
.|.+.|+.|-+|||...
T Consensus 6 HFFKNivspr~pp~~q~ 22 (26)
T 1ymm_C 6 HFFKNIVTPRGGSGGGG 22 (26)
T ss_pred hhhhhccCCCCCCCCcC
Confidence 47789999999998753
No 5
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=24.32 E-value=32 Score=19.92 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=12.4
Q ss_pred chhhhhHHHHHHHHh
Q psy9638 2 GDRYNIYSQLEHLQS 16 (85)
Q Consensus 2 ~dr~~~~~Qle~Lq~ 16 (85)
++|++.|+||++|-.
T Consensus 25 ~~rv~lq~qlq~lle 39 (48)
T 2kes_A 25 VERVTLQNQLQQFLE 39 (48)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 478999999999754
No 6
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=16.87 E-value=73 Score=19.88 Aligned_cols=30 Identities=10% Similarity=-0.098 Sum_probs=17.4
Q ss_pred HHHhcCchHHHHHHHHHHHhhCCCCCCCCC
Q psy9638 53 FSINENEAKARVRFNFMERMLQPCGPPPEK 82 (85)
Q Consensus 53 ~aia~nes~~r~r~~llekM~~pcgppp~~ 82 (85)
.|-..|+....+...+++.+..++.++|+.
T Consensus 157 ~Sa~~g~gi~~l~~~l~~~~~~~~~~~~~~ 186 (187)
T 1zj6_A 157 CCALTGEGLCQGLEWMMSRLKIRLEHHHHH 186 (187)
T ss_dssp CBTTTTBTHHHHHHHHHHHHCC--------
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHhhhhccC
Confidence 344458889999999999888877777654
No 7
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=15.02 E-value=48 Score=16.86 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=9.0
Q ss_pred HhhCCCCCCCCC
Q psy9638 71 RMLQPCGPPPEK 82 (85)
Q Consensus 71 kM~~pcgppp~~ 82 (85)
.++||-.|||-.
T Consensus 6 sivqppapppna 17 (26)
T 2lkw_A 6 SIVQPPAPPPNA 17 (26)
T ss_pred ccccCCCcCCCe
Confidence 467888888854
No 8
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=14.57 E-value=76 Score=19.97 Aligned_cols=19 Identities=21% Similarity=0.266 Sum_probs=13.9
Q ss_pred hHHHHHHHHhhccCCCCCCCch
Q psy9638 7 IYSQLEHLQSKYVGTGHADTTK 28 (85)
Q Consensus 7 ~~~Qle~Lq~KY~GtG~~dtTk 28 (85)
.+..++.|+..|-| | |.|+
T Consensus 40 l~~el~kL~~~YGg-g--Dm~k 58 (77)
T 2cly_C 40 LDRELFKLKQMYGK-A--DMNT 58 (77)
T ss_dssp HHHHHHHHHHHHCS-S--CTTS
T ss_pred HHHHHHHHHHHHCc-c--hHhh
Confidence 45678889999976 5 6665
No 9
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=13.93 E-value=21 Score=29.38 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=28.8
Q ss_pred ccCCCCCCCchHHHHHHhhhHHHHhhhCChhHHHHHHHhcC
Q psy9638 18 YVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINEN 58 (85)
Q Consensus 18 Y~GtG~~dtTk~EW~tn~hRDT~aS~~gH~~lL~Y~aia~n 58 (85)
..|.|+..++..||-.-|| .++|+.+-|+|.|++..
T Consensus 106 ~dGkG~qRr~~~EW~~lv~-----fh~gq~pt~eyqa~~rd 141 (494)
T 1jmx_A 106 GARVALQRRPAKEWEHLVN-----FHLGQWPSLEYQAQARD 141 (494)
T ss_dssp SHHHHTEECCHHHHHHHHH-----HHHHHCGGGGGSTTTTT
T ss_pred cccCccccCCHHHHHHHHH-----HHHhhCchhhhhhhccc
Confidence 3567788888999976555 68999999999888764
No 10
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=12.65 E-value=1.6e+02 Score=19.22 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=40.6
Q ss_pred HHhhccCCCCCCCchHHHHHHhhhHHHHhhhCC---hhHHHHHHHhc-CchHHHHHHHH
Q psy9638 14 LQSKYVGTGHADTTKFEWLVNIHRDSYASYMGH---YNMLNLFSINE-NEAKARVRFNF 68 (85)
Q Consensus 14 Lq~KY~GtG~~dtTk~EW~tn~hRDT~aS~~gH---~~lL~Y~aia~-nes~~r~r~~l 68 (85)
|-+|.++++..--.--.|-.+-.||-+--...- +.-..++|-.. |.++..|+-+|
T Consensus 19 ~~AkN~~~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RF 77 (95)
T 1ug2_A 19 VCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF 77 (95)
T ss_dssp CCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHH
T ss_pred eeeccceecCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHH
Confidence 346777777776666789999999998877765 44778888887 57777776544
Done!