Query psy9638
Match_columns 85
No_of_seqs 100 out of 138
Neff 4.0
Searched_HMMs 13730
Date Sat Aug 17 00:49:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9638.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9638hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2g7la2 a.121.1.1 (A:87-230) P 41.4 16 0.0012 21.5 3.9 42 29-72 4-45 (144)
2 d2g7ga2 a.121.1.1 (A:74-205) P 34.3 29 0.0021 19.9 4.2 43 29-73 4-46 (132)
3 d1idra_ a.1.1.1 (A:) Protozoan 26.3 37 0.0027 19.8 3.7 50 29-81 21-70 (127)
4 d1jmxa2 a.3.1.7 (A:86-162) Qui 23.6 9.8 0.00071 22.7 0.4 28 26-58 29-56 (77)
5 d1rtwa_ a.132.1.3 (A:) Putativ 21.3 74 0.0054 19.3 4.5 38 30-70 4-42 (206)
6 d1pbya2 a.3.1.7 (A:86-165) Qui 20.9 12 0.00087 22.5 0.4 27 27-58 30-56 (80)
7 d1z0xa2 a.121.1.1 (A:72-220) T 20.4 55 0.004 19.4 3.6 50 29-80 4-56 (149)
8 d1s69a_ a.1.1.1 (A:) Protozoan 20.2 69 0.005 18.3 4.0 50 29-81 10-59 (123)
9 d1su3a1 a.20.1.2 (A:32-98) Fib 16.3 30 0.0022 19.2 1.5 12 68-79 52-64 (67)
10 d1y0jb1 g.37.1.2 (B:1-36) U-sh 15.4 18 0.0013 18.5 0.3 6 72-77 10-15 (36)
No 1
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=41.39 E-value=16 Score=21.51 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=32.3
Q ss_pred HHHHHHhhhHHHHhhhCChhHHHHHHHhcCchHHHHHHHHHHHh
Q psy9638 29 FEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMERM 72 (85)
Q Consensus 29 ~EW~tn~hRDT~aS~~gH~~lL~Y~aia~nes~~r~r~~llekM 72 (85)
.||++...+.....+.-||.+...+......++..+| ++|.+
T Consensus 4 r~~Lr~~a~~~r~~l~~HP~~~~l~~~~~~~~p~~l~--~~e~~ 45 (144)
T d2g7la2 4 REQLRAVLTSYTLVLFAHPQLARSALVARPSGENYLR--LVERV 45 (144)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHSCCCSHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHhcCCCCcccHHH--HHHHH
Confidence 4789999999999999999999988766666555444 34444
No 2
>d2g7ga2 a.121.1.1 (A:74-205) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=34.34 E-value=29 Score=19.88 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=32.0
Q ss_pred HHHHHHhhhHHHHhhhCChhHHHHHHHhcCchHHHHHHHHHHHhh
Q psy9638 29 FEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMERML 73 (85)
Q Consensus 29 ~EW~tn~hRDT~aS~~gH~~lL~Y~aia~nes~~r~r~~llekM~ 73 (85)
.||++...+.-.+.+..||.+...+.-.-...+..++ ++|+++
T Consensus 4 r~~lr~~a~~~r~~~~~HP~~~~l~~~~~~~~p~~l~--~~e~~l 46 (132)
T d2g7ga2 4 DEAFSEWARSYRAAFSRHPTAIRLLATETVRDPGSLS--VYHSAA 46 (132)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGHHHHHTSCCCCHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHhhcCCCCChhHHH--HHHHHH
Confidence 5889999999999999999999987765555555443 455543
No 3
>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
Probab=26.33 E-value=37 Score=19.85 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=39.5
Q ss_pred HHHHHHhhhHHHHhhhCChhHHHHHHHhcCchHHHHHHHHHHHhhCCCCCCCC
Q psy9638 29 FEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMERMLQPCGPPPE 81 (85)
Q Consensus 29 ~EW~tn~hRDT~aS~~gH~~lL~Y~aia~nes~~r~r~~llekM~~pcgppp~ 81 (85)
++.+..+..+-|.-+..++.+-.||+ +....+.|..+.+=+++=+|.|+.
T Consensus 21 ~~~I~~lv~~FY~~i~~d~~l~~~F~---~~d~~~~~~~~~~fl~~~~GGp~~ 70 (127)
T d1idra_ 21 HEAIEVVVEDFYVRVLADDQLSAFFS---GTNMSRLKGKQVEFFAAALGGPEP 70 (127)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTGGGGT---TCCHHHHHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHHHHHcChHHHHhcC---CCCHHHHHHHHHHHHHHHhCcCCC
Confidence 56778889999999999998888885 445667777777777777888874
No 4
>d1jmxa2 a.3.1.7 (A:86-162) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Probab=23.59 E-value=9.8 Score=22.71 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=22.3
Q ss_pred CchHHHHHHhhhHHHHhhhCChhHHHHHHHhcC
Q psy9638 26 TTKFEWLVNIHRDSYASYMGHYNMLNLFSINEN 58 (85)
Q Consensus 26 tTk~EW~tn~hRDT~aS~~gH~~lL~Y~aia~n 58 (85)
-|-.||-.-+| .++|+.+-|+|.|++..
T Consensus 29 Rt~~EW~~Lv~-----fHlGq~PtlEyqA~~RD 56 (77)
T d1jmxa2 29 RPAKEWEHLVN-----FHLGQWPSLEYQAQARD 56 (77)
T ss_dssp CCHHHHHHHHH-----HHHHHCGGGGGSTTTTT
T ss_pred CCHHHHHHHHH-----hhhccCchHHHHHhccc
Confidence 36678876654 78999999999998864
No 5
>d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=21.26 E-value=74 Score=19.32 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=28.1
Q ss_pred HHHHHhhhHHHHhhhCChhHHHHHHHhcCc-hHHHHHHHHHH
Q psy9638 30 EWLVNIHRDSYASYMGHYNMLNLFSINENE-AKARVRFNFME 70 (85)
Q Consensus 30 EW~tn~hRDT~aS~~gH~~lL~Y~aia~ne-s~~r~r~~lle 70 (85)
|+|...+.|-+.+++.||-+.. +++|. ++...|+=|++
T Consensus 4 ~~L~~~~~~~w~~~~~HpFv~~---l~~GtL~~e~f~~yl~Q 42 (206)
T d1rtwa_ 4 EELIKENENIWRRFLPHKFLIE---MAENTIKKENFEKWLVN 42 (206)
T ss_dssp HHHHHHSHHHHGGGTTCHHHHH---HHTTCCCHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHCChHHHH---HhcCCCCHHHHHHHHHH
Confidence 5566677888888888887654 77877 88877766554
No 6
>d1pbya2 a.3.1.7 (A:86-165) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=20.94 E-value=12 Score=22.45 Aligned_cols=27 Identities=15% Similarity=0.369 Sum_probs=21.7
Q ss_pred chHHHHHHhhhHHHHhhhCChhHHHHHHHhcC
Q psy9638 27 TKFEWLVNIHRDSYASYMGHYNMLNLFSINEN 58 (85)
Q Consensus 27 Tk~EW~tn~hRDT~aS~~gH~~lL~Y~aia~n 58 (85)
|-.||-.-+| .++|+.+-|+|.|++..
T Consensus 30 t~~EW~~Lv~-----fHlGQ~PtlEyqA~~RD 56 (80)
T d1pbya2 30 TPEDWKHLVN-----FHLGQFPTLEYQALARD 56 (80)
T ss_dssp CHHHHHHHHH-----HHHHHCGGGGGSTTTTT
T ss_pred CHHHHHHHHH-----hhhccCchHHHHHhccC
Confidence 6678876654 78999999999988764
No 7
>d1z0xa2 a.121.1.1 (A:72-220) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=20.44 E-value=55 Score=19.41 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=34.4
Q ss_pred HHHHHHhhhHHHHhhhCChhHHHHHHHhcCchHHHHHHHHHHHhh---CCCCCCC
Q psy9638 29 FEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMERML---QPCGPPP 80 (85)
Q Consensus 29 ~EW~tn~hRDT~aS~~gH~~lL~Y~aia~nes~~r~r~~llekM~---~pcgppp 80 (85)
.|+|+...+.-...+.-||.++..+.-.....+..+| ++|.++ ..+|-+|
T Consensus 4 r~~L~~~a~~~~~~~~~hP~~~~l~~~~~~~~p~~l~--~~e~~l~~L~~aGl~~ 56 (149)
T d1z0xa2 4 YSDLLAFMENYYDLYQQFPCAVAIEIQTVPAYPQRLR--HLNQMMGILREAGFSP 56 (149)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHTSCCCSHHHHH--HHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHhhhccccchHHHH--HHHHHHHHHHccCCCH
Confidence 4778888889999999999999887666555555443 334432 3455554
No 8
>d1s69a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Cyanobacteria (Synechocystis sp.), pcc 6803 [TaxId: 1143]}
Probab=20.20 E-value=69 Score=18.26 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=38.0
Q ss_pred HHHHHHhhhHHHHhhhCChhHHHHHHHhcCchHHHHHHHHHHHhhCCCCCCCC
Q psy9638 29 FEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMERMLQPCGPPPE 81 (85)
Q Consensus 29 ~EW~tn~hRDT~aS~~gH~~lL~Y~aia~nes~~r~r~~llekM~~pcgppp~ 81 (85)
+|=+..+..+-|.-+..++.+-.||+ +......|..+..=+++=||.|+.
T Consensus 10 ~~~i~~lv~~FY~~i~~d~~l~~~F~---~~d~~~~~~~~~~Fl~~~~GGp~~ 59 (123)
T d1s69a_ 10 TTAVDLAVDKFYERVLQDDRIKHFFA---DVDMAKQRAHQKAFLTYAFGGTDK 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTGGGGT---TCCHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHhcC---cCCHHHHHHHHHHHHHHHcCcCCC
Confidence 45567788888999999998888885 455667777777777777888874
No 9
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.34 E-value=30 Score=19.15 Aligned_cols=12 Identities=50% Similarity=1.005 Sum_probs=8.3
Q ss_pred HHHHhhCC-CCCC
Q psy9638 68 FMERMLQP-CGPP 79 (85)
Q Consensus 68 llekM~~p-cgpp 79 (85)
-++.|.+| ||-|
T Consensus 52 T~~~M~~PRCGvp 64 (67)
T d1su3a1 52 TLKVMKQPRCGVP 64 (67)
T ss_dssp HHHHHTSCBCSSC
T ss_pred HHHHHCCCCCCCC
Confidence 45678777 7766
No 10
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=15.38 E-value=18 Score=18.47 Aligned_cols=6 Identities=67% Similarity=1.492 Sum_probs=0.0
Q ss_pred hhCCCC
Q psy9638 72 MLQPCG 77 (85)
Q Consensus 72 M~~pcg 77 (85)
|+.|||
T Consensus 10 ~c~pcg 15 (36)
T d1y0jb1 10 MCLPCG 15 (36)
T ss_dssp BCTTTC
T ss_pred eccccc
Done!