RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9638
         (85 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 33.7 bits (76), Expect = 0.004
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 21/97 (21%)

Query: 4   RYNIYS-QLE-HLQSKYVGTGHA-------DTTKFEW--LVNIHRDSY-ASYMGHYNMLN 51
             +I S  LE  ++ +     H            F+   L+  + D Y  S++GH+    
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH---- 480

Query: 52  LFSINENEAKARVR-----FNFMERMLQPCGPPPEKP 83
           L +I   E     R     F F+E+ ++         
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517



 Score = 25.6 bits (55), Expect = 2.2
 Identities = 6/58 (10%), Positives = 20/58 (34%)

Query: 19  VGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMERMLQPC 76
           +   ++  T  E L  +      ++    +  +   +  +  +A +R     +  + C
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246


>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
           like domain, redox, structural genomics, NPPSFA; NMR
           {Homo sapiens}
          Length = 133

 Score = 24.7 bits (54), Expect = 4.2
 Identities = 5/19 (26%), Positives = 7/19 (36%)

Query: 67  NFMERMLQPCGPPPEKPEE 85
           +    +     PPPE  E 
Sbjct: 110 SRALDLFSDNAPPPELLES 128


>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical,
          structural genomics, structural genomics consortium,
          SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
          Length = 117

 Score = 24.1 bits (52), Expect = 5.3
 Identities = 8/18 (44%), Positives = 15/18 (83%)

Query: 54 SINENEAKARVRFNFMER 71
          S+NE EA+ RV+ N++++
Sbjct: 1  SMNELEAQTRVKLNYLDQ 18


>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase;
          nucleotidyltransferase superfamily; HET: NAD; 2.20A
          {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A*
          1kku_A 1gzu_A*
          Length = 279

 Score = 23.9 bits (51), Expect = 8.5
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 44 MGHYNMLNLFSINENEAKARVRFNFMERMLQPCGPPPEKPE 84
            H   L LF + ++      R+  ++ ++ P G   +K  
Sbjct: 22 NMH---LRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKG 59


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,318,909
Number of extensions: 59676
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 8
Length of query: 85
Length of database: 6,701,793
Length adjustment: 53
Effective length of query: 32
Effective length of database: 5,221,980
Effective search space: 167103360
Effective search space used: 167103360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)