BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9639
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 125/280 (44%), Positives = 195/280 (69%), Gaps = 4/280 (1%)
Query: 1 MKQIGNNVSKLKYEMRVPASYKVPTSSCPQVLLKEWIRSKYEREEFRHPEALT-YITGHM 59
M GN+ ++ ++E +VP+ Y PT S Q+L ++WIR+KYER+EF +PE Y G+
Sbjct: 91 MASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQEPYSAGYR 150
Query: 60 DGFLMKRGKESGKYHPRRFVLNEINDTIKYYVK-EKKEPKATLRISELNVVIAPSKIEHP 118
+GFL KRG+++G++ R+FVL E +KY+ + + KEPKA ++I LN P+KI HP
Sbjct: 151 EGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKIGHP 210
Query: 119 HSLQLTFMKDGSTRHIYVYHEESQSIMNWYHAIRNAKFHRLQVAFPSANDSELVKLLTRD 178
H LQ+T++KD STR+I++YHE+ + I++W++A+R A+FH LQVAFP A+D++LV L+R+
Sbjct: 211 HGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGASDADLVPKLSRN 270
Query: 179 FGREGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGV 238
+ +EG++ KTGPK + +RKRWFT+D R+LMY ++PL A+ +GE+F+G GYTV G
Sbjct: 271 YLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGF 330
Query: 239 PPGAKDQGF--TFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
PP + + T+ TP R + F+ + D+ +W+ A Q
Sbjct: 331 PPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQ 370
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 125/280 (44%), Positives = 195/280 (69%), Gaps = 4/280 (1%)
Query: 1 MKQIGNNVSKLKYEMRVPASYKVPTSSCPQVLLKEWIRSKYEREEFRHPEALT-YITGHM 59
M GN+ ++ ++E +VP+ Y PT S Q+L ++WIR+KYER+EF +PE Y G+
Sbjct: 89 MASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQEPYSAGYR 148
Query: 60 DGFLMKRGKESGKYHPRRFVLNEINDTIKYYVK-EKKEPKATLRISELNVVIAPSKIEHP 118
+GFL KRG+++G++ R+FVL E +KY+ + + KEPKA ++I LN P+KI HP
Sbjct: 149 EGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKIGHP 208
Query: 119 HSLQLTFMKDGSTRHIYVYHEESQSIMNWYHAIRNAKFHRLQVAFPSANDSELVKLLTRD 178
H LQ+T++KD STR+I++YHE+ + I++W++A+R A+FH LQVAFP A+D++LV L+R+
Sbjct: 209 HGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGASDADLVPKLSRN 268
Query: 179 FGREGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGV 238
+ +EG++ KTGPK + +RKRWFT+D R+LMY ++PL A+ +GE+F+G GYTV G
Sbjct: 269 YLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGF 328
Query: 239 PPGAKDQGF--TFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
PP + + T+ TP R + F+ + D+ +W+ A Q
Sbjct: 329 PPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQ 368
>pdb|1V5U|A Chain A, Solution Structure Of The C-Terminal Pleckstrin Homology
Domain Of Sbf1 From Mouse
Length = 117
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 182 EGWLWKTGPKNADAYRKRWFTLDYRK--LMYHEEPLSAYPKGEIFLGHCSDGY--TVRLG 237
EG L+K G ++ RWF LD K L Y++ + KG I L T +G
Sbjct: 11 EGILYKKG-AFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIG 69
Query: 238 VPPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFT 280
P ++ F F +KT +R Y F A P QW+ +Q+ +
Sbjct: 70 APKTVDEKAF-FDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLS 111
>pdb|1WG7|A Chain A, Solution Structure Of Pleckstrin Homology Domain From
Human Kiaa1058 Protein
Length = 150
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 181 REGWLWKTGPKNA-----DAYRKRWFTL------DYRKLMYHEEPLSAYPKGEIFLGHCS 229
+ GWL+K +A ++++R+F L Y Y +E +S PKG IFL C
Sbjct: 20 KHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSC- 78
Query: 230 DGYTVRLGVPPGAKDQGFTFTLKTPQR-WYQFSALSAPDRDQWI 272
+GV K + F F LK + Y +A S + ++WI
Sbjct: 79 ------MGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWI 116
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
REGWL K G +++RWF L L Y E P+G I L + S +R
Sbjct: 13 REGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLS----IR----- 63
Query: 241 GAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT-GFTFTLKTPQRWYQFSALSAPD 299
+ P++ F ++ Q I+A +T ++ Y+ SA + +
Sbjct: 64 ---------EVDDPRKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEE 114
Query: 300 RDQWIQAVQTVL 311
+D+WI+++Q +
Sbjct: 115 KDEWIKSIQAAV 126
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 32/172 (18%)
Query: 144 IMNWYHAIRNAKFHRLQVAFPSANDSELVKLLTRDF---GREGWLWKTGPKNADAYRKRW 200
+ N Y +I+N F ++ ND LT F REGWL K G + +++RW
Sbjct: 184 LRNLYESIKNEPF---KIPEDDGND------LTHTFFNPDREGWLLKLGGR-VKTWKRRW 233
Query: 201 FTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPPGAKDQGFTFTLKTPQRWYQF 260
F L L Y E P+G I L + S +R ++ P++ F
Sbjct: 234 FILTDNCLYYFEYTTDKEPRGIIPLENLS----IR--------------EVEDPRKPNCF 275
Query: 261 SALSAPDRDQWIQAVQT-GFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTVL 311
+ + Q I+A +T ++ Y+ SA S ++++W+++++ +
Sbjct: 276 ELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI 327
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
In Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 123
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 183 GWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPPGA 242
GWL K +++RWF L L Y+++ G + L Y +R P
Sbjct: 15 GWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLL----PSYNIRPDGPGAP 70
Query: 243 KDQGFTFTLKTP-QRWYQFSALSAPDRDQWIQAV 275
+ + FTFT + P R Y +A + D W++A+
Sbjct: 71 RGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRAL 104
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain
Unliganded
Length = 138
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
REGWL K G +++RWF L L Y E P+G I L + ++R
Sbjct: 17 REGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPL----ENLSIR----- 67
Query: 241 GAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT-GFTFTLKTPQRWYQFSALSAPD 299
++ P++ F + + Q I+A +T ++ Y+ SA S +
Sbjct: 68 ---------EVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEE 118
Query: 300 RDQWIQAVQTVL 311
+++W+++++ +
Sbjct: 119 KEEWMKSIKASI 130
>pdb|2COD|A Chain A, Solution Structure Of The N-Terminal Ph Domain Of Arap2
Protein From Human
Length = 115
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 184 WLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPPGAK 243
WL K P+ ++KRW D + Y+ Y KG I L S TVR+
Sbjct: 13 WLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAIS---TVRV------- 62
Query: 244 DQGFT-FTLKTPQRWYQFSALSAPDRDQWI 272
QG F + T QR + F +R+ WI
Sbjct: 63 -QGDNKFEVVTTQRTFVFRVEKEEERNDWI 91
>pdb|1U5E|A Chain A, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|1U5E|B Chain B, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|2OTX|A Chain A, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
pdb|2OTX|B Chain B, Crystal Structure Of A N-Terminal Fragment Of Skap-Hom
Containing Both The Helical Dimerization Domain And The
Ph Domain
Length = 211
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 196 YRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGV---PPGAKDQGFTFTLK 252
++KRW L Y+ KGE + DGY VR+ G KD F +
Sbjct: 126 WQKRWCALSKTVFYYYGSDKDKQQKGEFAI----DGYDVRMNNTLRKDGKKD--CCFEIC 179
Query: 253 TP-QRWYQFSALSAPDRDQWIQAVQ 276
P +R YQF+A S D ++W+Q ++
Sbjct: 180 APDKRIYQFTAASPKDAEEWVQQLK 204
>pdb|1U5F|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom With 8
Vector-Derived N-Terminal Residues
Length = 148
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 196 YRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGV---PPGAKDQGFTFTLK 252
++KRW L Y+ KGE + DGY VR+ G KD F +
Sbjct: 37 WQKRWCALSKTVFYYYGSDKDKQQKGEFAI----DGYDVRMNNTLRKDGKKD--CCFEIC 90
Query: 253 TP-QRWYQFSALSAPDRDQWIQAVQ 276
P +R YQF+A S D ++W+Q ++
Sbjct: 91 APDKRIYQFTAASPKDAEEWVQQLK 115
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 32/172 (18%)
Query: 144 IMNWYHAIRNAKFHRLQVAFPSANDSELVKLLTRDF---GREGWLWKTGPKNADAYRKRW 200
+ N Y +I+N F ++ ND LT F REGWL K G + +++RW
Sbjct: 184 LRNLYESIKNEPF---KIPEDDGND------LTYTFFNPDREGWLLKLGGR-VKTWKRRW 233
Query: 201 FTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPPGAKDQGFTFTLKTPQRWYQF 260
F L L Y E P+G I L + S +R ++ P++ F
Sbjct: 234 FILTDNCLYYFEYTTDKEPRGIIPLENLS----IR--------------EVEDPRKPNCF 275
Query: 261 SALSAPDRDQWIQAVQT-GFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTVL 311
+ + Q I+A +T ++ Y+ SA S ++++W ++++ +
Sbjct: 276 ELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSIKASI 327
>pdb|1U5G|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|B Chain B, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|C Chain C, Crystal Structure Of The Ph Domain Of Skap-Hom
pdb|1U5G|D Chain D, Crystal Structure Of The Ph Domain Of Skap-Hom
Length = 122
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 196 YRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGV---PPGAKDQGFTFTLK 252
++KRW L Y+ KGE + DGY VR+ G KD F +
Sbjct: 37 WQKRWCALSKTVFYYYGSDKDKQQKGEFAI----DGYDVRMNNTLRKDGKKD--CCFEIC 90
Query: 253 TP-QRWYQFSALSAPDRDQWIQAVQ 276
P +R YQF+A S D ++W+Q ++
Sbjct: 91 APDKRIYQFTAASPKDAEEWVQQLK 115
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
+ GWL+K + KRWF L R L Y+++ G I L + V P
Sbjct: 24 KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPL----LSFRVAAVQPS 79
Query: 241 GAKDQGFTFTLK-TPQRWYQFSALSAPDRDQWIQAV 275
+ TF + R Y FSA S +++ WIQA+
Sbjct: 80 DNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAM 115
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
+ GWL+K + KRWF L R L Y+++ G I L + V P
Sbjct: 13 KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPL----LSFRVAAVQPS 68
Query: 241 GAKDQGFTFTLK-TPQRWYQFSALSAPDRDQWIQAV 275
+ TF + R Y FSA S +++ WIQA+
Sbjct: 69 DNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAM 104
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
REGWL K G + +++RWF L L Y E P+G I L + ++R
Sbjct: 5 REGWLLKLGGR-VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPL----ENLSIR----- 54
Query: 241 GAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT-GFTFTLKTPQRWYQFSALSAPD 299
++ P++ F + + Q I+A +T ++ Y+ SA S +
Sbjct: 55 ---------EVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEE 105
Query: 300 RDQWIQAVQTVL 311
+++W+++++ +
Sbjct: 106 KEEWMKSIKASI 117
>pdb|1FAO|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1PHISH IN COMPLEX WITH INOSITOL 1,3,4,5-
Tetrakisphosphate
pdb|1FB8|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1/phish
Length = 126
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
+EG+L K G ++ RWFTL +L Y ++ +S P + L CS V+
Sbjct: 20 KEGYLTKQGGL-VKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECS---AVQFDY-- 73
Query: 241 GAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
++++ F L P R + A + + D+WI+ ++
Sbjct: 74 -SQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILR 108
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 20/132 (15%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
REGWL K G + +++RWF L L Y E P+G I L + ++R
Sbjct: 5 REGWLLKLGGR-VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPL----ENLSIR----- 54
Query: 241 GAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT-GFTFTLKTPQRWYQFSALSAPD 299
++ P++ F + + Q I+A +T ++ Y+ SA S +
Sbjct: 55 ---------EVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEE 105
Query: 300 RDQWIQAVQTVL 311
+++W ++++ +
Sbjct: 106 KEEWXKSIKASI 117
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 181 REGWLWKTGPKNADAYR----KRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCS---DGYT 233
++GWL G ++ R KRWF L KLMY E KG + + D
Sbjct: 60 KQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNTN 119
Query: 234 VRLGVPPGAKDQGFTFTLKTPQRWYQ-FSALS 264
G+ D+ F ++P+ Q FS LS
Sbjct: 120 KENGIDIIMADRTFHLIAESPEDASQWFSVLS 151
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
R GWL+K ++KRWF L L Y+ + G I L + + L
Sbjct: 23 RRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILL----PSFQIALLTSE 78
Query: 241 GAKDQGFTFTLKTPQ-RWYQFSALSAPDRDQWIQAV 275
++ + F P R Y F + + + W++A+
Sbjct: 79 DHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAM 114
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 20/132 (15%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
REGWL K G + +++RWF L L Y E P+G I L + ++R + P
Sbjct: 7 REGWLLKLGGR-VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPL----ENLSIREVLDP 61
Query: 241 GAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT-GFTFTLKTPQRWYQFSALSAPD 299
+ F L P + Q I+A +T ++ Y+ SA S +
Sbjct: 62 RKPN---CFELYNPSH-----------KGQVIKACKTEADGRVVEGNHVVYRISAPSPEE 107
Query: 300 RDQWIQAVQTVL 311
+++W ++++ +
Sbjct: 108 KEEWXKSIKASI 119
>pdb|2D9X|A Chain A, Solution Structure Of The Ph Domain Of Oxysterol Binding
Protein-Related Protein 11 From Human
Length = 120
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 61 GFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEK---KEPKATLRISELNVVIAPSKIEH 117
G+LMK + R FVLN ++Y+V E+ ++P+ TL+++ VI+PS E
Sbjct: 12 GYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLA--GAVISPSD-ED 68
Query: 118 PHSLQLT 124
H+ +
Sbjct: 69 SHTFTVN 75
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 1 MKQIGNNVSKLKYEMRVPA-SYKVPTSSCPQVLLKEWIRSKYEREEF 46
M ++GN + YE RV A + K P SC + + WI +KY ++F
Sbjct: 101 MCELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKF 147
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 1 MKQIGNNVSKLKYEMRVPA-SYKVPTSSCPQVLLKEWIRSKYEREEF 46
M ++GN + YE RV A + K P SC + + WI +KY ++F
Sbjct: 101 MCELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKF 147
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 1 MKQIGNNVSKLKYEMRVPA-SYKVPTSSCPQVLLKEWIRSKYEREEF 46
M ++GN + YE RV A + K P SC + + WI +KY ++F
Sbjct: 101 MCELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKF 147
>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
From Human
Length = 115
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
++G++ K G + + + +RWF L + Y+ KG+I L + P
Sbjct: 10 KQGYMMKKGHRRKN-WTERWFVLKPNIISYYVSEDLKDKKGDILLDE-----NCCVESLP 63
Query: 241 GAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT 277
+ F +K + ++ SA + +WIQA+ +
Sbjct: 64 DKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHS 100
>pdb|2RLO|A Chain A, Split Ph Domain Of Pi3-Kinase Enhancer
Length = 128
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 237 GVPPGAKDQGFTFTL--KTPQRWYQFSALSAPDRDQWIQAVQTGFTFTLK 284
G A+++ F F + T Q W+ F A S +RD W+QA+++ +L+
Sbjct: 80 GSAGQAEEENFEFLIVSSTGQTWH-FEAASFEERDAWVQAIESQILASLQ 128
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 273 QAVQTGFTFTL--KTPQRWYQFSALSAPDRDQWIQAVQTVLDTPL 315
QA + F F + T Q W+ F A S +RD W+QA+++ + L
Sbjct: 84 QAEEENFEFLIVSSTGQTWH-FEAASFEERDAWVQAIESQILASL 127
>pdb|3ZUK|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
pdb|3ZUK|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
Length = 699
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 242 AKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFTFTLKTPQRWYQFSALSAP-DR 300
AK FT + P +W +S L A DRD VQ G+ + + L P DR
Sbjct: 424 AKLNKFTAKVGYPIKWRDYSKL-AIDRDDLYGNVQRGYAVNHDR-----ELAKLFGPVDR 477
Query: 301 DQWIQAVQTV 310
D+W QTV
Sbjct: 478 DEWFMTPQTV 487
>pdb|1U5D|A Chain A, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|B Chain B, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|C Chain C, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|D Chain D, Crystal Structure Of The Ph Domain Of Skap55
Length = 108
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 196 YRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLG---VPPGAKDQGFTFTLK 252
++KRW + Y+ S PKG + GY+VR+ K+ F T +
Sbjct: 23 WQKRWCVVSRGLFYYYANEKSKQPKGTFLI----KGYSVRMAPHLRRDSKKESCFELTSQ 78
Query: 253 TPQRWYQFSALSAPDRDQWIQAVQTGFTFTLK 284
+R Y+F+A S + W+ + +F LK
Sbjct: 79 -DRRTYEFTATSPAEARDWVDQI----SFLLK 105
>pdb|3FHQ|A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHQ|B Chain B, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHQ|D Chain D, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHQ|F Chain F, Structure Of Endo-Beta-N-Acetylglucosaminidase A
Length = 621
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 101 LRISELNVVIAPSKIEHPHSLQLTFMKDGSTRHIYVYHEESQSIMNW 147
L ISE + K EH + L + F DG YV E+ +SI W
Sbjct: 438 LPISEGTSLTWTFKSEHDNDLNVGFRLDGEEDFRYVEGEQRESINGW 484
>pdb|3FHA|A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHA|B Chain B, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHA|C Chain C, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHA|D Chain D, Structure Of Endo-Beta-N-Acetylglucosaminidase A
Length = 621
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 101 LRISELNVVIAPSKIEHPHSLQLTFMKDGSTRHIYVYHEESQSIMNW 147
L ISE + K EH + L + F DG YV E+ +SI W
Sbjct: 438 LPISEGTSLTWTFKSEHDNDLNVGFRLDGEEDFRYVEGEQRESINGW 484
>pdb|2VTF|A Chain A, X-Ray Crystal Structure Of The Endo-Beta-N-
Acetylglucosaminidase From Arthrobacter Protophormiae
E173q Mutant Reveals A Tim Barrel Catalytic Domain And
Two Ancillary Domains
pdb|2VTF|B Chain B, X-Ray Crystal Structure Of The Endo-Beta-N-
Acetylglucosaminidase From Arthrobacter Protophormiae
E173q Mutant Reveals A Tim Barrel Catalytic Domain And
Two Ancillary Domains
Length = 626
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 101 LRISELNVVIAPSKIEHPHSLQLTFMKDGSTRHIYVYHEESQSIMNW 147
L ISE + K EH + L + F DG YV E+ +SI W
Sbjct: 443 LPISEGTSLTWTFKSEHGNDLNVGFRLDGEEDFRYVEGEQRESINGW 489
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,404,693
Number of Sequences: 62578
Number of extensions: 435743
Number of successful extensions: 949
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 56
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)