RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9639
(321 letters)
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 275 bits (705), Expect = 4e-91
Identities = 129/322 (40%), Positives = 202/322 (62%), Gaps = 32/322 (9%)
Query: 1 MKQIGNNVSKLKYEMRVPASYKVPTSSCPQVLLKEWIRSKYEREEFRHPE-ALTYITGHM 59
M GN+ ++ ++E +VP+ Y PT S Q+L ++WIR+KYER+EF +PE Y G+
Sbjct: 89 MASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQEPYSAGYR 148
Query: 60 DGFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEK-KEPKATLRISELNVVIAPSKIEHP 118
+GFL KRG+++G++ R+FVL E +KY+ + KEPKA ++I LN P+KI HP
Sbjct: 149 EGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKIGHP 208
Query: 119 HSLQLTFMKDGSTRHIYVYHEESQSIMNWYHAIRNAKFHRLQVAFPSANDSELVKLLTRD 178
H LQ+T++KD STR+I++YHE+ + I++W++A+R A+FH LQVAFP A+D++LV L+R+
Sbjct: 209 HGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGASDADLVPKLSRN 268
Query: 179 FGREGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGV 238
+ +EG++ KTGPK + +RKRWFT+D R+LMY ++PL A+ +GE+F+G GYTV G
Sbjct: 269 YLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGF 328
Query: 239 PPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFTFTLKTPQRWYQFSALSAP 298
PP + + T+ TP R + F+ +
Sbjct: 329 PPSTQGHHW------------------------------PHGITIVTPDRKFLFACETES 358
Query: 299 DRDQWIQAVQTVLDTPLTPQDH 320
D+ +W+ A Q +D P+ PQ++
Sbjct: 359 DQREWVAAFQKAVDRPMLPQEY 380
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 97.5 bits (243), Expect = 2e-25
Identities = 29/108 (26%), Positives = 40/108 (37%), Gaps = 10/108 (9%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
+ GWL K P+ ++KRW D + Y+ Y KG I L S TVR
Sbjct: 10 KSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAIS---TVR----- 61
Query: 241 GAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFTFTLKTPQR 288
F + T QR + F +R+ WI + T Q
Sbjct: 62 --VQGDNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKSQSLTSQS 107
Score = 35.8 bits (83), Expect = 0.003
Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 61 GFLMKRGKESGKYHPRR-FVLNEINDTIKYYVKEK-KEPKATLRISELNVVIAPSKIEHP 118
G+L K + + +R + +I YY EK K + +S ++ V +++
Sbjct: 12 GWLDKLSPQGKRMFQKRWVKFD--GLSISYYNNEKEMYSKGIIPLSAISTV----RVQGD 65
Query: 119 HSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNA 154
+ ++ +T+ +V+ E + N W + NA
Sbjct: 66 NKFEVV-----TTQRTFVFRVEKEEERNDWISILLNA 97
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 89.4 bits (222), Expect = 2e-22
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 182 EGWLWKTGPKNADAYRKRWFTLDYRK--LMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVP 239
EG L+K G ++ RWF LD K L Y++ + KG I L +
Sbjct: 11 EGILYKKGAFM-KPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIG 69
Query: 240 -PGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT 277
P D+ F +KT +R Y F A P QW+ +Q+
Sbjct: 70 APKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQS 108
Score = 43.2 bits (102), Expect = 9e-06
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 4/98 (4%)
Query: 61 GFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEK-KEPKATLRISEL-NVVIAPSKIEHP 118
G L K+G + R FVL++ ++YY E K + ++E+ V I P
Sbjct: 12 GILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIGAP 71
Query: 119 HSLQLTFMKDGSTRH-IYVYHEESQSIMN-WYHAIRNA 154
++ D T +Y + + W I++
Sbjct: 72 KTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSC 109
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 86.0 bits (213), Expect = 5e-21
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
+ G+ K G +++R+F LD + Y + L P I L V+
Sbjct: 16 KAGYCVKQGAVM-KNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVH---KVQECKQS 71
Query: 241 GAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT 277
+ F + T R + A S + WI+AV
Sbjct: 72 DIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSG 108
Score = 38.6 bits (90), Expect = 5e-04
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 59 MDGFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEK-KEPKATLRISELNVVIA---PSK 114
G+ +K+G + R F L+ +TI Y+ E KEP + + E++ V
Sbjct: 16 KAGYCVKQGAVMKNWKRRYFQLD--ENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDI 73
Query: 115 IEHPHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNA 154
+ + ++ +T + +S M+ W A+ A
Sbjct: 74 MMRDNLFEIV-----TTSRTFYVQADSPEEMHSWIKAVSGA 109
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 84.4 bits (209), Expect = 1e-20
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
+ GWL+K + KRWF L R L Y+++ G I L + V P
Sbjct: 13 KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPL----LSFRVAAVQPS 68
Query: 241 GAKDQGFTFTLKTP-QRWYQFSALSAPDRDQWIQAVQ 276
+ TF + R Y FSA S +++ WIQA+
Sbjct: 69 DNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMG 105
Score = 42.4 bits (100), Expect = 2e-05
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 59 MDGFLMKRGKESGK-YHPRRFVLNEINDTIKYYVKEK-KEPKATLRISELNV--VIAPSK 114
G+L K+ K ++ R FVL + + YY EK + ++ + V V
Sbjct: 13 KAGWLFKQASSGVKQWNKRWFVLV--DRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDN 70
Query: 115 IEHPHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNA 154
I H+ + + Y + ES W A+ A
Sbjct: 71 ISRKHTFKAEH----AGVRTYFFSAESPEEQEAWIQAMGEA 107
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 84.0 bits (208), Expect = 2e-20
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 11/99 (11%)
Query: 182 EGWLWKTGPKNA-DAYRKRWFTLDYRK--LMYHEEPLSAYPKGEIFLGHCSDGYTVRLGV 238
G+L K G K ++ RWF D RK L Y A P I L
Sbjct: 11 CGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAV-------FD 63
Query: 239 PPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT 277
++ F +KTP R A + W+Q +Q
Sbjct: 64 CKADAEE-GIFEIKTPSRVITLKAATKQAMLYWLQQLQM 101
Score = 34.3 bits (79), Expect = 0.011
Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 11/103 (10%)
Query: 58 HMDGFLMKRGKESG--KYHPRRFVLNEINDTIKYYVKEK-KEPKATLRISELNVVIAPSK 114
+ G+L K G + + R F +E + Y + P ++ +S V
Sbjct: 9 KLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSS--AVFDCKA 66
Query: 115 IEHPHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNAKF 156
++ + + ++ M W ++ ++
Sbjct: 67 DAEEGIFEIK-----TPSRVITLKAATKQAMLYWLQQLQMKRW 104
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 83.7 bits (207), Expect = 3e-20
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
GWL K +++RWF L L Y+++ G + L Y +R P
Sbjct: 13 IRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLL----PSYNIRPDGPG 68
Query: 241 GAKDQGFTFTLKTP-QRWYQFSALSAPDRDQWIQAVQ 276
+ + FTFT + P R Y +A + D W++A+
Sbjct: 69 APRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALG 105
Score = 41.7 bits (98), Expect = 3e-05
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 59 MDGFLMKRGKESGKYHPRR-FVLNEINDTIKYYVKEKKEPKATLRISELNVVIAPSKIEH 117
+ G+L K+ + RR FVL+ + YY K+ +E + + I P
Sbjct: 13 IRGWLHKQDSSGLRLWKRRWFVLS--GHCLFYY-KDSREESVLGSVLLPSYNIRPDGPGA 69
Query: 118 PHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNA 154
P + TF + YV ++ + W A+ A
Sbjct: 70 PRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 107
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 82.9 bits (205), Expect = 7e-20
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
+ GWL+K + KRWF L R L Y+++ G I L + V P
Sbjct: 24 KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPL----LSFRVAAVQPS 79
Query: 241 GAKDQGFTFTLKTP-QRWYQFSALSAPDRDQWIQAVQ 276
+ TF + R Y FSA S +++ WIQA+
Sbjct: 80 DNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMG 116
Score = 40.5 bits (95), Expect = 9e-05
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 13/107 (12%)
Query: 59 MDGFLMKRGKESGK-YHPRRFVLNEINDTIKYYVKEK-KEPKATLRISELNVVIAP--SK 114
G+L K+ K ++ R FVL + + YY EK + ++ + V
Sbjct: 24 KAGWLFKQASSGVKQWNKRWFVLV--DRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDN 81
Query: 115 IEHPHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNAKFHRLQ 160
I H+ + + Y + ES W A+ A R+Q
Sbjct: 82 ISRKHTFKAEH----AGVRTYFFSAESPEEQEAWIQAMGEAA--RVQ 122
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 82.8 bits (205), Expect = 7e-20
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
+EG+L K G ++ RWFTL +L Y ++ +S P + L CS V+
Sbjct: 20 KEGYLTKQGGLVK-TWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECS---AVQ---FD 72
Query: 241 GAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT 277
++++ F L P R + A + + D+WI+ ++
Sbjct: 73 YSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRW 109
Score = 42.0 bits (99), Expect = 3e-05
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 11/115 (9%)
Query: 42 EREEFRHPEALTYITGHMDGFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEK-KEPKAT 100
E+ P A + T +G+L K+G + R F L+ + +KY+ + EP
Sbjct: 5 RTEDDLVPTAPSLGT--KEGYLTKQGGLVKTWKTRWFTLH--RNELKYFKDQMSPEPIRI 60
Query: 101 LRISELNVVIAPSKIEHPHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNA 154
L ++E + V E + L + ++ + W +R
Sbjct: 61 LDLTECSAVQFDYSQERVNCFCLV-----FPFRTFYLCAKTGVEADEWIKILRWK 110
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 84.3 bits (208), Expect = 2e-19
Identities = 29/174 (16%), Positives = 49/174 (28%), Gaps = 54/174 (31%)
Query: 181 REGWLWKTGPKNAD----AYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRL 236
++GWL G ++ ++KRWF L KLMY E KG + + +
Sbjct: 60 KQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSAKE------ 113
Query: 237 GVPPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT------------------- 277
+ + + R + A S D QW +
Sbjct: 114 -IIDNTNKE-NGIDIIMADRTFHLIAESPEDASQWFSVLSQVHSSTDQEIREMHDEQANP 171
Query: 278 -----------------------GFTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 308
+F + T R +A + + WI +Q
Sbjct: 172 QNAVGTLDVGLIDSVCASDSPDRPNSFVIITANRVLHCNADTPEEMHHWITLLQ 225
Score = 40.7 bits (95), Expect = 2e-04
Identities = 29/223 (13%), Positives = 61/223 (27%), Gaps = 66/223 (29%)
Query: 61 GFLMKRGKESGKYHP----RR-FVLNEINDTIKYYVKEK-KEPKATLRISELNVVIAPSK 114
G+L G S +R FVL + Y+ + ++ K T+ + +
Sbjct: 62 GWLHNNGGGSSTLSRRNWKKRWFVLR--QSKLMYFENDSEEKLKGTVEVRSAKEI--IDN 117
Query: 115 IEHPHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNAKFHRLQVAFPSANDSELVK 173
+ + + + ES + W+ + S+ D E+ +
Sbjct: 118 TNKENGIDII-----MADRTFHLIAESPEDASQWFSVLSQVH---------SSTDQEIRE 163
Query: 174 LLTRDFGREGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYT 233
M+ E+ G + D
Sbjct: 164 -----------------------------------MHDEQANPQNAVGTL------DVGL 182
Query: 234 VRLGVPPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
+ + D+ +F + T R +A + + WI +Q
Sbjct: 183 IDSVCASDSPDRPNSFVIITANRVLHCNADTPEEMHHWITLLQ 225
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 80.0 bits (197), Expect = 7e-19
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Query: 166 ANDSELVKLLTRDFGREGWLWKTGPKNADAYRKRWFTLDYRK--LMYHEEPLSAYPKGEI 223
++ S + + R G+L +N+ + +R+F LD + L+++ + G
Sbjct: 2 SSGSSGMPYVDRQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAG 61
Query: 224 FLGHCSDGY--TVRLGVPPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
+G Y V + P F F + + Y A D W++A+
Sbjct: 62 AVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALN 116
Score = 40.3 bits (94), Expect = 1e-04
Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 56 TGHMDGFLMKRGKESGKYHPRR-FVLNEINDTIKYYVKEKKE------PKATLRISELNV 108
+ GFL E+ RR F+L+ + + +Y+ + +L+++ ++
Sbjct: 14 QNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISK 73
Query: 109 VIAPSKIEHPHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNA 154
V + + P + F+ + ++ Y Q + W A+ A
Sbjct: 74 VSIATPKQKPKT-PFCFVINALSQR-YFLQANDQKDLKDWVEALNQA 118
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 79.7 bits (197), Expect = 7e-19
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
++G++ K G + + +RWF L + Y+ KG+I L + V P
Sbjct: 10 KQGYMMKKGHRRK-NWTERWFVLKPNIISYYVSEDLKDKKGDILL---DENCCVE--SLP 63
Query: 241 GAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT 277
+ F +K + ++ SA + +WIQA+ +
Sbjct: 64 DKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHS 100
Score = 45.1 bits (107), Expect = 2e-06
Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 59 MDGFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEK-KEPKATLRISELNVV-IAPSKIE 116
G++MK+G + R FVL + I YYV E K+ K + + E V P K
Sbjct: 10 KQGYMMKKGHRRKNWTERWFVLK--PNIISYYVSEDLKDKKGDILLDENCCVESLPDKDG 67
Query: 117 HPHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNA-KFHRLQVAFPSA 166
+ + + W AI + +L + PS+
Sbjct: 68 KKCLFLVK-----CFDKTFEISASDKKKKQEWIQAIHSTIHLLKLGSSGPSS 114
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 80.2 bits (198), Expect = 8e-19
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
R GWL+K ++KRWF L L Y+ + G I L + + L
Sbjct: 23 RRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILL----PSFQIALLTSE 78
Query: 241 GAKDQGFTFTLKTPQ-RWYQFSALSAPDRDQWIQAVQT 277
++ + F P R Y F + + + W++A+
Sbjct: 79 DHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 116
Score = 42.5 bits (100), Expect = 2e-05
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 59 MDGFLMKRGKESGK-YHPRRFVLNEINDTIKYYVKEKKEPKATLRISELNVVIAPSKIEH 117
G+L K+ K + R FVL+ + + YY +++KE I + IA E
Sbjct: 23 RRGWLYKQDSTGMKLWKKRWFVLS--DLCLFYY-RDEKEEGILGSILLPSFQIALLTSED 79
Query: 118 PHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNAKFHRLQVAFPSA 166
+ + F Y + ++ M W A+ +A +Q + PS+
Sbjct: 80 HINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAA--LVQTSGPSS 127
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 80.2 bits (197), Expect = 1e-18
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 167 NDSELVKLLTRDFGREGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLG 226
+ E +K+ EG+L + Y W L L ++ + S ++ +
Sbjct: 6 SGQERLKITALPLYFEGFLLIKRSGYRE-YEHYWTELRGTTLFFYTDKKSIIYVDKLDIV 64
Query: 227 HCSDGYTVRLGVPPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT 277
+ L + FTL P+ Q + ++W + T
Sbjct: 65 DLT-----CLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILT 110
Score = 37.0 bits (85), Expect = 0.002
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 6/101 (5%)
Query: 61 GFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEK-KEPKATLRISELNVVIAPSKIEHPH 119
GFL+ + +Y L T+ +Y +K L I +L + + E
Sbjct: 22 GFLLIKRSGYREYEHYWTELR--GTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKN- 78
Query: 120 SLQLTFMKDGSTRHIYVYHEESQSIMNWYHAIRNAKFHRLQ 160
F + + E ++S W I +
Sbjct: 79 --CAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELSVP 117
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 79.8 bits (196), Expect = 7e-18
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 181 REGWLWKTGPKNA---DAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLG 237
+ G+L K ++ ++KRW L Y+ KGE + DGY VR+
Sbjct: 108 KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAI----DGYDVRMN 163
Query: 238 VPPG-AKDQGFTFTLKTP-QRWYQFSALSAPDRDQWIQAVQT 277
+ F + P +R YQF+A S D ++W+Q ++
Sbjct: 164 NTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKF 205
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 76.7 bits (189), Expect = 8e-18
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 181 REGWLWKTGPKNA---DAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLG 237
++G+L K ++ ++KRW + Y+ S PKG + GY+VR+
Sbjct: 5 KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLI----KGYSVRM- 59
Query: 238 VPPGAKDQG--FTFTLKTP-QRWYQFSALSAPDRDQWIQAVQT 277
P +D F L + +R Y+F+A S + W+ +
Sbjct: 60 APHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISF 102
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 77.7 bits (191), Expect = 1e-17
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
Query: 181 REGWLWKTGPKNAD-----AYRKRWFTL------DYRKLMYHEEPLSAYPKGEIFLGHCS 229
+ GWL+K +A ++++R+F L Y Y +E +S PKG IFL C
Sbjct: 20 KHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCM 79
Query: 230 DGYTVRLGVPPGAKDQGFTFTLKTP-QRWYQFSALSAPDRDQWIQAVQ 276
V K + F F LK + Y +A S + ++WI +
Sbjct: 80 G-------VVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILN 120
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 76.1 bits (187), Expect = 3e-17
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 181 REGWLWKTGPKNA---DAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLG 237
+ G+L K ++ ++KRW L Y+ KGE + DGY VR+
Sbjct: 19 KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAI----DGYDVRMN 74
Query: 238 VPPGA-KDQGFTFTLKTP-QRWYQFSALSAPDRDQWIQAVQT 277
+ F + P +R YQF+A S D ++W+Q ++
Sbjct: 75 NTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKF 116
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 74.8 bits (184), Expect = 6e-17
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
+ GWL K +++R+F L ++L Y+++ P+G ++L G T++
Sbjct: 10 KMGWLKKQRSIVK-NWQQRYFVLRAQQLYYYKDEEDTKPQGCMYL----PGCTIKEIATN 64
Query: 241 GAKDQGFTFTLKTP--------QRWYQFSALSAPDRDQWIQAVQ 276
+ F F + Q Y A S + ++W++ ++
Sbjct: 65 PEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLR 108
Score = 42.0 bits (99), Expect = 3e-05
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 61 GFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEK-KEPKATLRISELNVVIAPS--KIEH 117
G+L K+ + R FVL + YY E+ +P+ + + + + +
Sbjct: 12 GWLKKQRSIVKNWQQRYFVLR--AQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAG 69
Query: 118 PHSLQLTFMKDGSTR---HIYVYHEESQSIMN-WYHAIRNA 154
++ R YV SQ+ M W +R
Sbjct: 70 KFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRV 110
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 74.0 bits (182), Expect = 1e-16
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 181 REGWLWKTGPKNADAYRKRWFTL--DYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGV 238
++G L K G + ++ R F L D L Y++ + P G I L C +V
Sbjct: 9 KQGCLLKQGHRRK-NWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVV-TSVESNS 66
Query: 239 PPGAKDQGFTFTLKTP-QRWYQFSALSAPDRDQWIQAVQT 277
++ F + T + Y A + +R +WI+A+Q
Sbjct: 67 NGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQM 106
Score = 44.7 bits (106), Expect = 2e-06
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 61 GFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEK-KEPKATLRISELNVV-IAPSKIEHP 118
G L+K+G + R+F+L E + YY ++P + + V + +
Sbjct: 11 GCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRK 70
Query: 119 HSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNA 154
+ F + Y + W AI+ A
Sbjct: 71 SEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 107
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 74.3 bits (182), Expect = 1e-16
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 18/132 (13%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
REGWL K G + +++RWF L L Y E P+G I L + S
Sbjct: 7 REGWLLKLGGRVK-TWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSI-------REV 58
Query: 241 GAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFTFTLKTPQRWYQFSALSAPDR 300
+ F L P Q + D ++ Y+ SA S ++
Sbjct: 59 LDPRKPNCFELYNPSHKGQVIKACKTEAD----------GRVVEGNHVVYRISAPSPEEK 108
Query: 301 DQWIQAVQTVLD 312
++W+++++ +
Sbjct: 109 EEWMKSIKASIS 120
Score = 36.5 bits (84), Expect = 0.002
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 22/115 (19%)
Query: 59 MDGFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEK-KEPKATLRISELNVVIAPSKIEH 117
+G+L+K G + R F+L ++ + Y+ KEP+ + + L++
Sbjct: 7 REGWLLKLGGRVKTWKRRWFILT--DNCLYYFEYTTDKEPRGIIPLENLSIREVLDP-RK 63
Query: 118 PHSLQLT-----------------FMKDGSTRHIYVYHEESQSIMN-WYHAIRNA 154
P+ +L +Y S W +I+ +
Sbjct: 64 PNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKAS 118
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 73.2 bits (180), Expect = 2e-16
Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 16/113 (14%)
Query: 165 SANDSELVKLLTRDFGREGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIF 224
S+ S G+L+++ + ++ WF + + L +
Sbjct: 2 SSGSSGSTM--------SGYLYRSK-GSKKPWKHLWFVIKNKVLYTYAASEDVAALESQP 52
Query: 225 LGHCSDGYTVRLGVPPGAKDQGFTFTLKTP-QRWYQFSALSAPDRDQWIQAVQ 276
L G+TV L + F L +Y F A A +WI A Q
Sbjct: 53 L----LGFTVTL--VKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQ 99
Score = 47.0 bits (112), Expect = 4e-07
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 10/103 (9%)
Query: 59 MDGFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEKKEPKATLRISELN--VVIAPSKIE 116
M G+L + + FV+ + + Y ++ A L V + +
Sbjct: 10 MSGYLYRSKGSKKPWKHLWFVI---KNKVLYTYAASEDVAALESQPLLGFTVTLVKDENS 66
Query: 117 HPHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNAKFHR 158
QL YV+ + W A +
Sbjct: 67 ESKVFQLLH----KGMVFYVFKADDAHSTQRWIDAFQEGTVSG 105
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 73.3 bits (180), Expect = 2e-16
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
++G+L K +++R ++ L + ++ L C V+
Sbjct: 12 KKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNR-QPAKLNLLTC----QVKP---- 62
Query: 241 GAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
+ +F L + R Y F A D WI +
Sbjct: 63 -NAEDKKSFDLISHNRTYHFQAEDEQDYVAWISVLT 97
Score = 48.3 bits (115), Expect = 1e-07
Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 12/107 (11%)
Query: 59 MDGFLMKRGKESGK-YHPRRFVLNEINDTIKYYVKEKKEPKATLRISELNVVIAPSKIEH 117
G+L+K+ K + R+ + N + A L + V E
Sbjct: 12 KKGYLLKKSDGIRKVWQRRKCSVK--NGILTISHATSNRQPAKLNLLTCQVKPNA---ED 66
Query: 118 PHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNAKFHRLQVAF 163
S L S Y + E + W + N+K L +AF
Sbjct: 67 KKSFDLI-----SHNRTYHFQAEDEQDYVAWISVLTNSKEEALTMAF 108
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 72.0 bits (177), Expect = 5e-16
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
REG+L K G + ++ W L + ++++ PKG I L G T+
Sbjct: 7 REGYLVKKG-SVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPL----KGSTLTSPCQD 61
Query: 241 GAKDQGFTFTLKTPQ-RWYQFSALSAPDRDQWIQAVQ 276
K F F + T + + + F A +RD W++ +
Sbjct: 62 FGKRM-FVFKITTTKQQDHFFQAAFLEERDAWVRDIN 97
Score = 46.2 bits (110), Expect = 8e-07
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 61 GFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEK-KEPKATLRISELNVV-IAPSKIEHP 118
G+L+K+G + P VL D I++Y K+ PK + + + +
Sbjct: 9 GYLVKKGSVFNTWKPMWVVLL--EDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRM 66
Query: 119 HSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNA 154
++T + + + + + W I A
Sbjct: 67 FVFKIT----TTKQQDHFFQAAFLEERDAWVRDINKA 99
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 71.0 bits (174), Expect = 1e-15
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 181 REGWLWKTGPKNADAYRKRWFTL--DYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGV 238
++G L K G + ++ R F L D L Y++ + P G I L C +V
Sbjct: 20 KQGCLLKQGHRRK-NWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVV-TSVESNS 77
Query: 239 PPGAKDQGFTFTLKTP-QRWYQFSALSAPDRDQWIQAVQT 277
++ F + T + Y A + +R +WI+A+Q
Sbjct: 78 NGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQM 117
Score = 45.1 bits (107), Expect = 2e-06
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 61 GFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEK-KEPKATLRISELNVV-IAPSKIEHP 118
G L+K+G + R+F+L E + YY ++P + + V + +
Sbjct: 22 GCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRK 81
Query: 119 HSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNA 154
+ F + Y + W AI+ A
Sbjct: 82 SEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 118
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 69.4 bits (170), Expect = 2e-15
Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAY--PKGEIFLGHCSDGYTVRLGV 238
R G L K ++ RW L L Y++ +G I L +
Sbjct: 3 RCGVLSKWTNYIH-GWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAV--------I 53
Query: 239 PPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
P D F + + A R QWI A++
Sbjct: 54 TPHDFD-ECRFDISVNDSVWYLRAQDPDHRQQWIDAIE 90
Score = 40.1 bits (94), Expect = 8e-05
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 6/97 (6%)
Query: 59 MDGFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEKKEPKATLRISELNVVIAPSKIEHP 118
G L K + R VL N+ + YY E + L+ +
Sbjct: 3 RCGVLSKWTNYIHGWQDRWVVLK--NNALSYYKSEDETEYGCRGSICLSKAVITPHDFDE 60
Query: 119 HSLQLTFMKDGSTRHIYVYHEESQSIMNWYHAIRNAK 155
++ + S ++ + + W AI K
Sbjct: 61 CRFDISV--NDSVWYLRAQDPDHRQ--QWIDAIEQHK 93
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 70.2 bits (171), Expect = 7e-15
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 5/101 (4%)
Query: 181 REGWLWKTGPK----NADAYRKRWFTLDYRKLMYHEEP-LSAYPKGEIFLGHCSDGYTVR 235
E L K + + Y++R F L L Y+E Y KG I + V+
Sbjct: 17 LEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEIVK 76
Query: 236 LGVPPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
+ F + A S RD W++ ++
Sbjct: 77 NDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLK 117
Score = 35.1 bits (80), Expect = 0.013
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 59 MDGFLMKRGKESGK-----YHPRRFVLNEINDTIKYYVKE--KKEPKATLRISELNVV-- 109
++ L+KR ++ K Y R FVL + YY KK K + +S++ V
Sbjct: 17 LEEILIKRSQQKKKTSPLNYKERLFVLT--KSMLTYYEGRAEKKYRKGFIDVSKIKCVEI 74
Query: 110 IAPSKIEHPHSLQLTFMKDGSTRHIYVYHEESQSIMNWYHAIRNAKFHR 158
+ P + F +Y++ QS W ++ +
Sbjct: 75 VKNDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIKNN 123
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 69.2 bits (169), Expect = 7e-15
Identities = 29/139 (20%), Positives = 41/139 (29%), Gaps = 37/139 (26%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLM---YHEEPLSAYPKGEIFLGHCSDGYTVRLG 237
++G+L K G K ++ R F L Y P G L G
Sbjct: 20 KQGYLAKQGHKR-KNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNG 78
Query: 238 VPPGAKD--QGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFTFTLKTPQRWYQFSAL 295
VP G K QG F + T Y A
Sbjct: 79 VPTGVKGNVQGNLFKVITKDD-------------------------------THYYIQAS 107
Query: 296 SAPDRDQWIQAVQTVLDTP 314
S +R +WI+A++ + P
Sbjct: 108 SKAERAEWIEAIKKLTSGP 126
Score = 43.7 bits (103), Expect = 8e-06
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 7/101 (6%)
Query: 61 GFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEK--KEPKATLRISELNVVIAPSKIEHP 118
G+L K+G + + RRFVL + + YY K P + V
Sbjct: 22 GYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPT 81
Query: 119 ----HSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNA 154
+ F Y S++ W AI+
Sbjct: 82 GVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL 122
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 68.4 bits (167), Expect = 9e-15
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 7/102 (6%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYR-KLMYHEEPLSAYPKGEIFL-GHCSD---GYTVR 235
+ GWL + ++K WF L L+Y+++ + ++ + C + G R
Sbjct: 7 KSGWLLRQSTILKR-WKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECR 65
Query: 236 LGVPPGAKDQGFTFTLKTPQ-RWYQFSALSAPDRDQWIQAVQ 276
PP K + + + A S D W +Q
Sbjct: 66 DTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQ 107
Score = 39.5 bits (92), Expect = 2e-04
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 19/109 (17%)
Query: 61 GFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEKKEPKATLRI------------SELNV 108
G+L+++ ++ F L D Y ++ ++ E
Sbjct: 9 GWLLRQSTILKRWKKNWFDLWS--DGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRD 66
Query: 109 VIAPSKIEHPHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNAKF 156
P LQ+ +DG T + ES W +++++
Sbjct: 67 TQPPDGKSKDCMLQIV-CRDGKTISLCA---ESTDDCLAWKFTLQDSRT 111
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 67.9 bits (166), Expect = 2e-14
Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 8/100 (8%)
Query: 181 REGWLWKTGPKNAD---AYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLG 237
+EG L + ++ + L L + + P + + G
Sbjct: 2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNM----GGEQCGGC 57
Query: 238 VPPGAKDQGFTFTLKTP-QRWYQFSALSAPDRDQWIQAVQ 276
D+ F + + + SA S + +W+Q +
Sbjct: 58 RRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLC 97
Score = 43.6 bits (103), Expect = 7e-06
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 14/104 (13%)
Query: 59 MDGFLMKRGKESGKY----HPRRFVLNEINDTIKYYVKEK-KEPKATLRISELNVVIAP- 112
+G L + S VL+ N + Y P ++ +
Sbjct: 2 KEGMLHYKAGTSYLGKEHWKTCFVVLS--NGILYQYPDRTDVIPLLSVNMGGEQCGGCRR 59
Query: 113 -SKIEHPHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNA 154
+ + PH+ Q+ S R ES++ M W + A
Sbjct: 60 ANTTDRPHAFQVIL----SDRPCLELSAESEAEMAEWMQHLCQA 99
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 65.8 bits (160), Expect = 2e-13
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 181 REGWLWKTGP--KNADAYRKRWFTLDY-RKLMYHEEPLSAYPKGEIFL----GHCSDGYT 233
R GWLW+ + +++ WF L L Y+ + + + + + G
Sbjct: 10 RGGWLWRQSSILRR---WKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQE 66
Query: 234 VRLGVPPGAKDQGFTFTLKTPQ-RWYQFSALSAPDRDQWIQAVQ 276
+ PP + + T+ + A + D W A+
Sbjct: 67 CQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALM 110
Score = 39.6 bits (92), Expect = 2e-04
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 9/103 (8%)
Query: 61 GFLMKRGKESGKYHPRRFVLNEINDTIKYYVKE---KKEPKATLRISELNVVIAPS---- 113
G+L ++ ++ F L + T+ YY E +E + + + ++ +
Sbjct: 12 GWLWRQSSILRRWKRNWFALWL-DGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDV 70
Query: 114 KIEHPHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNAK 155
+ S + E++ W A+ A
Sbjct: 71 QPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEAN 113
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 60.6 bits (147), Expect = 5e-12
Identities = 13/98 (13%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSA-YPKGEIFLGHCSDGYTVRLGVP 239
+L ++ RW ++ L ++++ + + + L C VP
Sbjct: 10 TSSYLNVLVNSQ---WKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEV-------VP 59
Query: 240 PGAKDQGFTFTLKTP-QRWYQFSALSAPDRDQWIQAVQ 276
+ D ++F + + + A S+ + W+ +
Sbjct: 60 DPSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLL 97
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 59.7 bits (144), Expect = 2e-11
Identities = 27/132 (20%), Positives = 42/132 (31%), Gaps = 19/132 (14%)
Query: 181 REGWLWKTGP-KNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVP 239
WL G K+ + K W L L+ ++ + G + L C +
Sbjct: 10 MADWLKIRGTLKS---WTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEI-------IE 59
Query: 240 PGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFTFTLKTPQRWYQFSALSAPD 299
+K GF F L P A+ P + Q P + A S D
Sbjct: 60 RPSKKDGFCFKLFHPLE-QSIWAVKGPKGEAVGSITQP-------LPSSYLIIRATSESD 111
Query: 300 RDQWIQAVQTVL 311
W+ A++ L
Sbjct: 112 GRCWMDALELAL 123
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 59.2 bits (143), Expect = 3e-11
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLD-----YRKLMYHEEPLSAYPKGEIFLGHCSDGYTVR 235
G+LW G ++KR+F L + + E + P+ + L DGYTV
Sbjct: 10 HSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAE-PQELLQL----DGYTVD 64
Query: 236 LGVP-PGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
P PG + F F++ DR W+QA+
Sbjct: 65 YTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMY 106
Score = 34.9 bits (80), Expect = 0.009
Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 7/116 (6%)
Query: 59 MDGFLMKRGKESGK-YHPRRFVLNEIN---DTIKYYVKEKKEPKATLRISELNVVIAPSK 114
G+L GK K + R FVL +++ + Y ++K EP+ L++ V +
Sbjct: 10 HSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQ 69
Query: 115 IEHPHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNAKFHRLQVAFPSANDS 169
F ++ + + W A+ A + P+ +
Sbjct: 70 PGLEGG--RAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQSGP 123
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 58.3 bits (141), Expect = 3e-11
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 182 EGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAY--PKGEIFLGHCSDGYTVRLGVP 239
EG L+K ++ RWF LD L Y++ KG I + C +
Sbjct: 2 EGVLYKWT-NYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCE--------IK 52
Query: 240 PGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT 277
+ D + ++ + A++A +R +W+ A+ +
Sbjct: 53 VHSADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGS 90
Score = 36.7 bits (85), Expect = 0.001
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 59 MDGFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEKKEPKATLRISELNVVIAPSKIEHP 118
M+G L K + PR FVL+ N + YY + K + ++ V
Sbjct: 1 MEGVLYKWTNYLTGWQPRWFVLD--NGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSADN 58
Query: 119 HSLQLTFMKDGSTRHIYVYHEESQSIMNWYHAIRNAK 155
++L +H Y+ + W A+ ++K
Sbjct: 59 TRMELII---PGEQHFYMKAVNAAERQRWLVALGSSK 92
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 57.7 bits (139), Expect = 7e-11
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 183 GWLWKTGPKNADAYRKRWFTL---DYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVP 239
G L + ++ + + + W + D + L I L + + P
Sbjct: 12 GPLRLS--ESGETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPL----PSCKLSVPDP 65
Query: 240 PGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT 277
D G + L+ ++ + SA SA + QW++ + T
Sbjct: 66 EERLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLST 103
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 56.8 bits (136), Expect = 2e-10
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 25/141 (17%)
Query: 181 REGWLWKTGPKNADA-YRKRWFTL-DYRKLMYH---EEPLSAYPKGEIFLGHCSDGYTVR 235
++ +L K + + ++K++ TL L+YH + + + E+ L
Sbjct: 6 KQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRT------- 58
Query: 236 LGVPPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFTFTLKTP-QRWYQFSA 294
T + + SA QA + F F + + + + F A
Sbjct: 59 ------------TVKVPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEA 106
Query: 295 LSAPDRDQWIQAVQTVLDTPL 315
S +RD W+QA+++ + L
Sbjct: 107 ASFEERDAWVQAIESQILASL 127
Score = 29.0 bits (64), Expect = 1.00
Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 29/125 (23%)
Query: 61 GFLMKRGKES--GKYHPRRFVLNEINDTIKYYVKEKKEPKATLRISELNVVIAPSKIEHP 118
FL+KR S ++ + L+ + Y + + E++++ K+
Sbjct: 8 SFLLKRSGNSLNKEWKKKYVTLSS--NGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGK 65
Query: 119 HSLQLTFMK-----------------------DGSTRHIYVYHEESQSIMNWYHAIRNAK 155
+ G T H E + W AI +
Sbjct: 66 RPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEER--DAWVQAIESQI 123
Query: 156 FHRLQ 160
LQ
Sbjct: 124 LASLQ 128
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 56.4 bits (136), Expect = 2e-10
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
Query: 182 EGWLWKTGPKNADAYRKRWFTLDYRK--LMY--HEEPLSAYPKGEIFLGHCSDGYTVRLG 237
G+L K ++ R+F L+ L Y +E+ + P+G + L
Sbjct: 11 YGYLMKYT-NLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAV-------- 61
Query: 238 VPPGAKDQGFTFTLKTP-QRWYQFSALSAPDRDQWIQAVQT 277
+ P +D TFT+ Y+ A A +R W+ +Q
Sbjct: 62 ISPSDED-SHTFTVNAASGEQYKLRATDAKERQHWVSRLQI 101
Score = 42.2 bits (99), Expect = 2e-05
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 58 HMDGFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEKKEPKATL-RISELNVVIAPSKIE 116
++ G+LMK + R FVLN ++Y+V E+ + + VI+PS E
Sbjct: 9 NVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSD-E 67
Query: 117 HPHSLQLTFMKDGSTRHIYVYHEESQSIMNWYHAIRNAK 155
H+ + S + +++ +W ++
Sbjct: 68 DSHTFTVN---AASGEQYKLRATDAKERQHWVSRLQICT 103
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 56.2 bits (135), Expect = 3e-10
Identities = 29/136 (21%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 181 REGWLWK-TGPKNADAYRKRWFTLDYRKLMYHEEPL---SAYPKGEIFLGHCSDGYTVRL 236
G+L A+ +RW L + Y P P G I L +C+
Sbjct: 7 ERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPA 66
Query: 237 GVPPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFTFTLKTPQRWYQFSALS 296
A+ F PQR L + RD SA +
Sbjct: 67 NREFCARRNTFELITVRPQREDDRETLVSQCRD--------------TLCVTKNWLSADT 112
Query: 297 APDRDQWIQAVQTVLD 312
+RD W+Q + VL
Sbjct: 113 KEERDLWMQKLNQVLV 128
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 55.7 bits (133), Expect = 1e-09
Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 20/138 (14%)
Query: 181 REGWLWKTGPK----NADAYRKRWFTLDYRKLMYH----EEPLSAYPKGEIFLGHCSDGY 232
E K + + ++K F L KL Y+ E KG I + +
Sbjct: 5 LESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVE 64
Query: 233 TVRLGVPPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFTFTLKTPQRWYQF 292
TV P P+R + + +Q + + F + +
Sbjct: 65 TVVPEKNP------------PPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYV 112
Query: 293 SALSAPDRDQWIQAVQTV 310
+ + R +WI ++ V
Sbjct: 113 FSPTEELRKRWIHQLKNV 130
Score = 28.4 bits (62), Expect = 2.6
Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 34/131 (25%)
Query: 59 MDGFLMKRGKESGKYHP-----RRFVLNEINDTIKYYVKEKK-----EPKATLRISELNV 108
++ +KR ++ K P F+L + YY + + K ++ + ++
Sbjct: 5 LESIFLKRSQQKKKTSPLNFKKCLFLLT--VHKLSYYEYDFERGRRGSKKGSIDVEKITC 62
Query: 109 V----------------------IAPSKIEHPHSLQLTFMKDGSTRHIYVYHEESQSIMN 146
V +I F +YV+ +
Sbjct: 63 VETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKR 122
Query: 147 WYHAIRNAKFH 157
W H ++N +
Sbjct: 123 WIHQLKNVIRY 133
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein,
REV-interacting protein, human immunodeficiency virus,
AIDS, structural genomics; 1.48A {Homo sapiens} PDB:
2d9l_A
Length = 140
Score = 54.8 bits (132), Expect = 1e-09
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 1 MKQIGNNVSKLKYEMRVPASYKVPTSSCPQVLLKEWIRSKYEREEFRHPEA 51
+++ GN V K + +KE+++ KYE++ + P
Sbjct: 80 LQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPE 130
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural
genomics, structural genomics consortium, SGC, protein
transport; 1.90A {Homo sapiens}
Length = 134
Score = 54.8 bits (132), Expect = 1e-09
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 1 MKQIGNNVSKLKYEMRVPASYKVPTSSCPQVLLKEWIRSKYEREEFRHP 49
M+++GN + YE +P +++ P ++ +IR KYE++++
Sbjct: 83 MQEMGNGKANRLYEAYLPETFRRPQIDPA---VEGFIRDKYEKKKYMDR 128
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 54.8 bits (132), Expect = 2e-09
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 1 MKQIGNNVSKLKYEMRVPASYKVPTSSCPQVLLKEWIRSKYEREEFRHPEALT 53
M+ +GN ++L YE +P +++ P + ++ +IR KYE++++ A+
Sbjct: 85 MQDMGNTKARLLYEANLPENFRRPQTDQA---VEFFIRDKYEKKKYYDKNAIA 134
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 57.1 bits (137), Expect = 2e-09
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 1 MKQIGNNVSKLKYEMRVPASYKV-PTSSCPQVLLKEWIRSKYEREEFRHPEALTYITGHM 59
M ++GN + YE RV A P SC + + WI +KY ++F L I G
Sbjct: 101 MCELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK--LPEIRGRR 158
Query: 60 DGFLMKRGKESGKYHPRR 77
G RG+ P
Sbjct: 159 GGRGRPRGQPPVPPKPSI 176
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 53.4 bits (128), Expect = 3e-09
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 165 SANDSELVKLLTRDFGREGWLWKTGPKNADAYRKRWFTL-DYRKLMYHEEPLSAYPKGEI 223
S +D +VK EGWL K G +R R+F L + + ++E + E
Sbjct: 2 SMSDVAIVK--------EGWLHKRGEYIK-TWRPRYFLLKNDGTFIGYKERPQDVDQREA 52
Query: 224 FLGHCSDGYTVRLGVPPGAKDQGFTFTLKTPQ----RWYQFSALSAPDRDQWIQAVQT 277
L + S + + + + TF ++ Q F + +R++W A+QT
Sbjct: 53 PLNNFS---VAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQT 107
Score = 44.9 bits (106), Expect = 3e-06
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 61 GFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEKKEPKATL---RISELNVVIAPSKIEH 117
G+L KRG+ + PR F+L I Y + + + S + ++
Sbjct: 12 GWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPR 71
Query: 118 PHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNAKFHRLQ 160
P++ + ++ +T +H E+ W AI+ L+
Sbjct: 72 PNTFIIRCLQW-TTVIERTFHVETPEEREEWTTAIQTVA-DGLK 113
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 51.8 bits (123), Expect = 7e-08
Identities = 28/153 (18%), Positives = 41/153 (26%), Gaps = 33/153 (21%)
Query: 164 PSANDSELVKLLTRDFGREGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAY----- 218
S S++ K G+L K K+ KR+F L L Y
Sbjct: 3 ESDGFSDVRK--------VGYLRKP--KS---MHKRFFVLRAASEAGGPARLEYYENEKK 49
Query: 219 -------PKGEIFLGHCSDGYTVRLGVPPGAKDQG-FTFTLKTPQRWYQFSALSAPDRDQ 270
PK I L C + + A + L T + +A S ++D
Sbjct: 50 WRHKSSAPKRSIPLESCFN-------INKRADSKNKHLVALYTRDEHFAIAADSEAEQDS 102
Query: 271 WIQAVQTGFTFTLKTPQRWYQFSALSAPDRDQW 303
W QA+ A
Sbjct: 103 WYQALLQLHNRAKGHHDGAAALGAGGGGGSCSG 135
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase,
PKB, pleckstrin homology domain, inositol phosphate,
signal transduction; HET: 4PT; 1.45A {Homo sapiens}
SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Length = 151
Score = 49.4 bits (117), Expect = 1e-07
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPP 240
+ G + K + R+R L +Y+ +P++ KGEI + P
Sbjct: 54 KMGPVDK---RKGLFARRRQLLLTEGPHLYYVDPVNKVLKGEIPWSQE---------LRP 101
Query: 241 GAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
AK+ TF + TP R Y S + +W + +Q
Sbjct: 102 EAKNFK-TFFVHTPNRTYYLMDPSG-NAHKWCRKIQ 135
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 50.8 bits (120), Expect = 2e-07
Identities = 18/159 (11%), Positives = 44/159 (27%), Gaps = 12/159 (7%)
Query: 122 QLTFMKDGSTRHIYVYHEESQSIMNWYHAIRNAKFHRLQVAFPSANDSELVKLLTRDFGR 181
QL + E S + + D + +
Sbjct: 221 QLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDPLYVPDPDPTKFPVNRNLTRK 280
Query: 182 EGWLWK--TGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVP 239
G+L + + ++++ LM + + +C +V
Sbjct: 281 AGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARG-DVAGGLAMDIDNC----SVM---A 332
Query: 240 PGAKDQGFTFTLKT--PQRWYQFSALSAPDRDQWIQAVQ 276
+D+ + F + + ++ A S D ++WI +
Sbjct: 333 VDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTIN 371
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 49.2 bits (117), Expect = 6e-07
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 1 MKQIGNNVSKLKYEMRVPAS-YKVPTSSCPQVLLKEWIRSKYEREEFRHPEA 51
+GN E ++P+ P++ +++I +KY F
Sbjct: 98 ALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCT 149
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 48.1 bits (114), Expect = 1e-06
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 1 MKQIGNNVSKLKYEMRVPASYKV-PTSSCPQVLLKEWIRSKYEREEFRHPE 50
K IGN E +P+ V P + K++I +KY + +
Sbjct: 73 AKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 4e-06
Identities = 50/341 (14%), Positives = 100/341 (29%), Gaps = 101/341 (29%)
Query: 20 SYKVPTSSCPQVLLKEWIRSKYEREEFRH--PEALTYITGHMD------------GFLMK 65
VPT+S + + +E+F PE + G++
Sbjct: 19 VLLVPTAS--------FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 66 R--GKESGKYHP----------RRFVL-NEINDTIKYYVKEKKEP----KATLR--ISEL 106
+ G++ ++ N+I+ ++E K ++ I+
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 107 NVVIAPSKIEHPHSLQLTFMKDGSTRHIYV----------YHEESQSIMNWYHAIRNAKF 156
+ P + +L + +G+ + + Y EE + + YH +
Sbjct: 131 IMAKRPFDKKSNSAL-FRAVGEGNAQ-LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 157 HR----LQVAFPSANDSELVKLLTRDFGREGWLWKTGPKNADAYRKRWFTLDYRKLMYHE 212
L + D+E K+ T+ WL Y L
Sbjct: 189 KFSAETLSELIRTTLDAE--KVFTQGLNILEWLENPSNTPDKDY------LLS------- 233
Query: 213 EPLSAYPKGEIFL---GHCSDGYTV---RLGVPPG---AKDQGFTFTLKTPQRWYQFSAL 263
P+S P I + H Y V LG PG + +G T + +A+
Sbjct: 234 IPIS-CPL--IGVIQLAH----YVVTAKLLGFTPGELRSYLKGATGHSQG-----LVTAV 281
Query: 264 ---SAPDRDQWIQAVQTGFTFT----LKTPQRWYQFSALSA 297
+ + +V+ T ++ Y ++L
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRC-YEAYPNTSLPP 321
Score = 33.1 bits (75), Expect = 0.15
Identities = 37/245 (15%), Positives = 62/245 (25%), Gaps = 107/245 (43%)
Query: 2 KQIGNNVSKLKYEMRVPASYKVPTSSCPQVLLKEWIRSKYEREEFRHPEA---LTYIT-- 56
K+I N S + +E V K + + KE I FR + T T
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKT------EKIFKE-INEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 57 --------------------------GH--------------MDGF------LMKRGK-- 68
GH M + RG
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS-IESLVEVVFYRGMTM 1793
Query: 69 -------ESGKYH-------PRRFVLNEINDTIKYYVKE-KKEPKATLRISELN-----V 108
E G+ + P R + + ++Y V+ K + I N
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY 1853
Query: 109 VIAPSKIEHPHSLQLTFMKDGSTRHIYVYHEESQSIMNWYHAIRNAKFHRLQVAFPSAND 168
V A G R + + +++N + ++ LQ +
Sbjct: 1854 VAA-----------------GDLRAL----DTVTNVLN-FIKLQKIDIIELQKSLS---- 1887
Query: 169 SELVK 173
E V+
Sbjct: 1888 LEEVE 1892
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 44.6 bits (105), Expect = 4e-06
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 10/101 (9%)
Query: 182 EGWLWKTGPKNAD--AYRKRWFTLDYRKLMY--HEEPLSAYPKGEIFLGHCSDGYTVRLG 237
+ L P+ YR+ W L Y ++ P ++ L G V
Sbjct: 12 KDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNL----KGCEVVPD 67
Query: 238 VPPGAKDQGFTFTLKTPQ--RWYQFSALSAPDRDQWIQAVQ 276
V + + +P+ +W+ +
Sbjct: 68 VNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCR 108
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 44.1 bits (104), Expect = 6e-06
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 11/108 (10%)
Query: 181 REGWLWKT-----GPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVR 235
+ G L T G K + W L L+++ EP P +V
Sbjct: 14 KSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVD 73
Query: 236 L-----GVPPGAKDQGFTFTLKTPQ-RWYQFSALSAPDRDQWIQAVQT 277
L + ++T + + + W +A++T
Sbjct: 74 LRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRT 121
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 43.5 bits (102), Expect = 8e-06
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 14/107 (13%)
Query: 181 REGWLWKTGPKNADAYRKR-WFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVP 239
R+GWL K WF L L ++++ K + + D +R V
Sbjct: 14 RKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSV----DNLKLR-DVE 68
Query: 240 PGAKDQGFTFTLKTP--------QRWYQFSALSAPDRDQWIQAVQTG 278
G F L R + + + + D W +
Sbjct: 69 KGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA 115
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 44.4 bits (104), Expect = 9e-06
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 19/110 (17%)
Query: 181 REGWLWKTGPKNAD---------AYRKRWFTLDYRKLMYH----EEPLSAYPKGEIFLGH 227
+EGWL +++ + L L + E+ + + I +
Sbjct: 5 KEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNA 64
Query: 228 CSDGYTVRLGVPPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT 277
C + + + F L T F A D WI+ +Q
Sbjct: 65 CL------IDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQE 108
Score = 32.1 bits (72), Expect = 0.14
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 279 FTFTLKTPQRWYQFSALSAPDRDQWIQAVQTV 310
F L T F A D WI+ +Q
Sbjct: 78 NVFRLTTSDCECLFQAEDRDDMLAWIKTIQES 109
Score = 30.5 bits (68), Expect = 0.49
Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 25/114 (21%)
Query: 58 HMDGFLMKR------GKESG----KYHPRRFVLNEINDTIKYYVKEKKE------PKATL 101
+G+L R GK G + VL Y K+K+E + +
Sbjct: 4 AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLR---GHSLYLYKDKREQTTPSEEEQPI 60
Query: 102 RISELNVVIAPSKIEHPHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIRNA 154
++ + I+ S+ + + +LT ++ ++ E + M W I+ +
Sbjct: 61 SVNACLIDISYSETKRKNVFRLT-----TSDCECLFQAEDRDDMLAWIKTIQES 109
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 42.7 bits (100), Expect = 1e-05
Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 27/133 (20%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSA---YPKGEIFLGHCSDGYTVRLG 237
+ G+L + K +Y K ++ L L + P + L C+
Sbjct: 8 KSGFLERRS-KFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVT------ 60
Query: 238 VPPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFTFTLKTPQRWYQFSALSA 297
+ T + + +F + A Q G + + F A S
Sbjct: 61 ---EHSRKNSTSSPNSTGSDAKFV----------LHAKQNG----IIRRGHNWVFKADSY 103
Query: 298 PDRDQWIQAVQTV 310
W ++ +
Sbjct: 104 ESMMSWFDNLKIL 116
Score = 38.8 bits (90), Expect = 3e-04
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 17/109 (15%)
Query: 61 GFLMKRGKESGKYHPRRFVLNEINDTIKYY----VKEKKEPKATL--------RISELNV 108
GFL +R K Y +VL + + + K+ P +L S N
Sbjct: 10 GFLERRSKFLKSYSKGYYVLT--PNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNS 67
Query: 109 VIAPSKIEHPHSLQLTFMKDGSTR--HIYVYHEESQSIMN-WYHAIRNA 154
+P+ L ++G R H +V+ +S M W+ ++
Sbjct: 68 TSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKIL 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 2e-05
Identities = 41/316 (12%), Positives = 101/316 (31%), Gaps = 71/316 (22%)
Query: 32 LLKEWIRSKYE--REEFR--HPEALTYITGHMDGFLMKRGKESGKYHPRRFVLNEINDTI 87
LL +++ + + E +P L+ I ++ G + + +++ I
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSII-----AESIRDGLATWDNW-KHVNCDKLTTII 359
Query: 88 KYYVK--EKKEPKA---TLRISELNVVIAPSKIEHPHSLQLTFMKDGSTRHIYVYHEESQ 142
+ + E E + L + + I P+ + L L D +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTIL-----LSL-IWFDVIK-------SDVM 405
Query: 143 SIMNWYH----AIRNAK-----FHRLQVAF--PSANDSEL-VKLLTRDFGREGW-LWKTG 189
++N H + K + + N+ L ++ + +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 190 PKNADAYRKRWFTLDYRKLMYH------EEPLSAYPKGEIFLGHCSD----GYTVRLGVP 239
P D Y +++ + + +H E ++ + +FL D +R
Sbjct: 466 PPYLDQY---FYS--H--IGHHLKNIEHPERMTLFRM--VFL----DFRFLEQKIRHDST 512
Query: 240 PGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFTFTLKTPQRWYQFS-----A 294
TL+ + + + + P ++ + A+ F ++ +++ A
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD-FLPKIEENLICSKYTDLLRIA 571
Query: 295 LSAPDRDQWIQAVQTV 310
L A D + +A + V
Sbjct: 572 LMAEDEAIFEEAHKQV 587
Score = 36.4 bits (83), Expect = 0.013
Identities = 37/226 (16%), Positives = 72/226 (31%), Gaps = 66/226 (29%)
Query: 4 IGNNVSKLK-YEMR--------VPASYKVPTSSCPQVLLKEWIRSKYEREE--------- 45
I ++++ L+ E R P S +PT +L W
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPT----ILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 46 ---FRHPEALTYITGHMDGFLMKRGKESGKY--H---------PRRFVLNEINDT----- 86
+ P+ T +L + K +Y H P+ F +++
Sbjct: 415 SLVEKQPKESTI--SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 87 ----IKYYVK--EKKEPKATLRISELNVVIAPSKIEHPHS------------LQLTFMKD 128
I +++K E E R+ L+ KI H + QL F K
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 129 GSTRHIYVYHEESQSIMNWYHAIR----NAKFHRL-QVAFPSANDS 169
+ Y +I+++ I +K+ L ++A + +++
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Score = 33.3 bits (75), Expect = 0.14
Identities = 48/364 (13%), Positives = 91/364 (25%), Gaps = 138/364 (37%)
Query: 8 VSKLKYEMRVPA-------SYKVPTSSCPQVLLKEWIRSKYEREEFRHPEAL------TY 54
+S +K E R P+ + + QV K + + R +AL
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR--QALLELRPAKN 152
Query: 55 ITGH-MDGFLMKRGK-----ESGKYHPRRFVLNEINDTIKYYVKEKKEPKATLRISELNV 108
+ + G GK + + V +++ I +++ K + L
Sbjct: 153 VLIDGVLGS----GKTWVALDVCLSYK---VQCKMDFKI-FWLNLKNCNSPETVLEMLQ- 203
Query: 109 VIAPSKIEHPHSLQLTFMKDGSTRHIYVYHEESQSIMNWYHAIRNAKFHRLQVA--FPSA 166
L + ++R + S +I H+I+ + RL + + +
Sbjct: 204 -----------KLLYQIDPNWTSRS-----DHSSNIKLRIHSIQA-ELRRLLKSKPYENC 246
Query: 167 -------NDSELVK---------LLTRDFGREGWLWKTGPKNADAYRKRWFTLDYRKLMY 210
+++ L TR D
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-----------VTDF--------------- 280
Query: 211 HEEPLSAYPKGEIFLGHCSDGYTVR---------LGV-----PPGAKDQGFTFTLKTPQR 256
LSA I L H S T L P P+R
Sbjct: 281 ----LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-------PRR 329
Query: 257 WYQFSALSAPDRDQWIQAVQTGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTVLDTPLT 316
+ W W + D+ +++ L+ L
Sbjct: 330 LSIIAESIRDGLATW---------------DNWKH------VNCDKLTTIIESSLNV-LE 367
Query: 317 PQDH 320
P ++
Sbjct: 368 PAEY 371
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 41.5 bits (97), Expect = 4e-05
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 8/104 (7%)
Query: 181 REGWLWKTGPKNADAYR-------KRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYT 233
EG L + A + + L L ++++ +A
Sbjct: 10 MEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLAR 69
Query: 234 VRLGVPPGAKDQGFTFTLKTPQ-RWYQFSALSAPDRDQWIQAVQ 276
+ V + + F L + Y F A + W++ V
Sbjct: 70 AQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVN 113
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 43.5 bits (102), Expect = 5e-05
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 26/168 (15%)
Query: 148 YHAIRNAKFHRLQVAFPSANDSELVKLLTRDFGREGWLWKTGPKNADAYRKRWFTLDYRK 207
Y +I+N F P + ++L REGWL K +++RWF L
Sbjct: 188 YESIKNEPFK-----IPEDDGNDLTYTFFNP-DREGWLLKL-GGRVKTWKRRWFILTDNC 240
Query: 208 LMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPPGAKDQGFTFTLKTPQRWYQFSALSAPD 267
L Y E P+G I L + ++R P F L P
Sbjct: 241 LYYFEYTTDKEPRGIIPL----ENLSIREVEDPRKP---NCFELYNPS-----------H 282
Query: 268 RDQWIQAVQTGFTFTL-KTPQRWYQFSALSAPDRDQWIQAVQTVLDTP 314
+ Q I+A +T + + Y+ SA S ++++W+++++ +
Sbjct: 283 KGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD 330
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 43.0 bits (100), Expect = 5e-05
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 12/109 (11%)
Query: 181 REGWLWKTGPKNADAYRK-----------RWFTLDYRKLMYHEEPLSAYPKGEIFLGHCS 229
+ GWL+ RK W TL L+++E +
Sbjct: 13 KAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCAL 72
Query: 230 DGYTVRLGVPPGAKDQGFTFTLKTP-QRWYQFSALSAPDRDQWIQAVQT 277
+ P + F L Y F A S D + W+ A+ +
Sbjct: 73 FAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHS 121
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 40.7 bits (94), Expect = 3e-04
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 5/102 (4%)
Query: 181 REGWLWKTGPKNADAYR----KRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRL 236
+ + K K A R W +L L ++E + H +
Sbjct: 20 KNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIV 79
Query: 237 GVPPGAKDQGFTFTLKTP-QRWYQFSALSAPDRDQWIQAVQT 277
P + F F L + F S + + WI A+ +
Sbjct: 80 QAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHS 121
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 39.8 bits (92), Expect = 6e-04
Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 11/103 (10%)
Query: 182 EGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPPG 241
+G+L +++K + L L + SA P+ L D + +
Sbjct: 135 QGFLHVKELGK-KSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLED-SNIFSLIAGR 192
Query: 242 AKDQG---FTFTLKTPQ------RWYQFSALSAPDRDQWIQAV 275
+ +K + A R W+ A
Sbjct: 193 KQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAF 235
Score = 30.5 bits (68), Expect = 0.65
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 13/109 (11%)
Query: 59 MDGFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEKKEPKATLR----ISELNVVIAPS- 113
+ GFL + + L + K L+ + + N+ +
Sbjct: 134 IQGFLHVKELGKKSWKKLYVCLRR--SGLYCSTKGTSAAPRHLQLLADLEDSNIFSLIAG 191
Query: 114 --KIEHPHSLQLTF----MKDGSTRHIYVYHEESQSIMNWYHAIRNAKF 156
+ P L +++ + + E+ Q+ +W A R K+
Sbjct: 192 RKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY 240
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 38.1 bits (88), Expect = 6e-04
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 16/109 (14%)
Query: 181 REGWLW-----KTGPKNADA-YRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCS----- 229
EG L K G K A + + + W L L+Y+ + +
Sbjct: 3 MEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSI 62
Query: 230 DGYTVRLGVPPGAKDQGFTFTLKTPQ--RWYQFSALSAPDRDQWIQAVQ 276
G+ V P + F L P Y+F S W + +
Sbjct: 63 VGWMV---QLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLD 108
Score = 30.4 bits (68), Expect = 0.32
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 94 KKEPKATLRISELNVVIAPSKIEHPHSLQLTFMKDGSTRHIYVYHEESQSIMN-WYHAIR 152
K P + I V + P EHP QL G+ Y + S+ W+ +
Sbjct: 53 KSTPGKKVSIVGWMVQL-PDDPEHPDIFQLNNPDKGNV---YKFQTGSRFHAILWHKHLD 108
Query: 153 NA 154
+A
Sbjct: 109 DA 110
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 37.9 bits (88), Expect = 8e-04
Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 20/113 (17%)
Query: 181 REGWLWKTGPKNADAYRK--------RWFTLDYRKLMYHEEPLSAYPKGEIFLGHCS--- 229
+ G L +T K AD ++ W L+ L + ++ ++ G S
Sbjct: 10 KAGVLHRT--KTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPE 67
Query: 230 -----DGYTVRLGVPPGAKDQGFTFTLKTPQR-WYQFSALSAPDRDQWIQAVQ 276
G T+ + + L++ Y S W +A+
Sbjct: 68 YTVELRGATLSWAPKDKSSRK-NVLELRSRDGSEYLIQHDSEAIISTWHKAIA 119
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 38.2 bits (88), Expect = 0.001
Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 10/125 (8%)
Query: 158 RLQVAFPSANDSELVKLLTRDFGREGWLWKTGPKN--ADAYRKRWFTLDYRKLMYH--EE 213
L++ S ++ +T ++ PK Y++ W T + + +E
Sbjct: 26 DLEITLEGGKTSTILGDITSIPELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKE 85
Query: 214 PLSAYPKGEIFLGHCSDGYTVRLGVPPGAKDQGFTFTLKTPQ--RWYQFSALSAPDRDQW 271
S P ++ L G V V + + + + W
Sbjct: 86 ESSGTPAHQMNL----RGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHW 141
Query: 272 IQAVQ 276
+ A +
Sbjct: 142 MAACR 146
Score = 28.2 bits (62), Expect = 2.4
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 7/86 (8%)
Query: 73 YHPRRFVLNEINDTIKYYVKEKKE----PKATLRISELNVVIAPSKIEHPHSLQLTFMKD 128
Y DT K K+E P + + V + +++L
Sbjct: 66 YKQYWCTFK---DTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVA 122
Query: 129 GSTRHIYVYHEESQSIMNWYHAIRNA 154
I++ + + +W A R A
Sbjct: 123 EGMNEIWLRCDNEKQYAHWMAACRLA 148
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 36.1 bits (83), Expect = 0.002
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 182 EGWLWKT-----GPKNAD--AYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTV 234
EG+L + K A ++ + ++ +++ ++++ SA
Sbjct: 2 EGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEA 61
Query: 235 RLGVPPGAKDQGFTFTLKTPQ-RWYQFSALSAPDRDQWIQAVQT 277
V K + F L+ Y F A + + WIQA+ +
Sbjct: 62 ICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISS 105
Score = 26.5 bits (58), Expect = 5.4
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 279 FTFTLKTPQ-RWYQFSALSAPDRDQWIQAVQT 309
F L+ Y F A + + WIQA+ +
Sbjct: 74 HVFKLRLSDGNEYLFQAKDDEEMNTWIQAISS 105
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 35.7 bits (82), Expect = 0.004
Identities = 10/109 (9%), Positives = 35/109 (32%), Gaps = 14/109 (12%)
Query: 181 REGWLWK------TGPKNAD-AYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCS---- 229
EG++ + T K ++ ++ K + ++ ++++ E+
Sbjct: 10 HEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDL 69
Query: 230 DGYTVRLGVPPGAKDQGFTFTLKTPQ-RWYQFSALSAPDRDQWIQAVQT 277
+ + + +K + A + QW+ +++
Sbjct: 70 QNAAI--EIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKA 116
Score = 28.0 bits (62), Expect = 2.0
Identities = 4/33 (12%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 279 FTFTLKTPQ-RWYQFSALSAPDRDQWIQAVQTV 310
+K + A + QW+ +++
Sbjct: 85 HVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQ 117
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 129
Score = 35.8 bits (82), Expect = 0.005
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 181 REGWLWKTGPKNADAYRKR-WFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVP 239
+EGW+ + D RKR ++ LD + L + + EI L + R
Sbjct: 10 KEGWMVHYT--SRDNLRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRISSPRDFTN 67
Query: 240 PGAKDQGFTFTLKTPQRWY 258
F + T Y
Sbjct: 68 ISQGSNPHCFEIITDTMVY 86
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 37.2 bits (86), Expect = 0.005
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 1 MKQIGNNVSKLKYEMRVPASYKV-PTSSCPQVLLKEWIRSKYEREEFRHPEA 51
+GN E ++P+ P++ +++I +KY F
Sbjct: 79 ALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCT 130
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein,
cysteine-rich motif, GTPase activation; 2.00A
{Cryptosporidium parvum iowa II}
Length = 138
Score = 35.6 bits (82), Expect = 0.006
Identities = 5/44 (11%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 1 MKQIGNNVSKLKYEMRVPASYKVPTSSCPQVLLKEWIRSKYERE 44
M GN ++ ++ + ++ T +Y++
Sbjct: 92 MDIGGNGRARNYFKQVLGVNFSPKTKEYAS----SICGRQYKQI 131
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 35.4 bits (81), Expect = 0.006
Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 13/108 (12%)
Query: 182 EGWLWKTGPKNADAY--RKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVP 239
EGWL N + K++ + +K+++++ + + VR
Sbjct: 4 EGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQ 63
Query: 240 P-----GAKDQGFTFTLKTPQ------RWYQFSALSAPDRDQWIQAVQ 276
AK+ F + + A S ++ +W+ +
Sbjct: 64 TDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLV 111
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural
genomics consorti ER-golgi transport, golgi apparatus,
GTPase activation; 2.40A {Homo sapiens}
Length = 147
Score = 34.8 bits (80), Expect = 0.011
Identities = 7/44 (15%), Positives = 9/44 (20%)
Query: 1 MKQIGNNVSKLKYEMRVPASYKVPTSSCPQVLLKEWIRSKYERE 44
MK GN + E + R K
Sbjct: 94 MKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVAL 137
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein
trafficking, hydrolase AC; 2.40A {Plasmodium falciparum
3D7}
Length = 163
Score = 34.9 bits (80), Expect = 0.015
Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 1 MKQIGNNVSKLKYEMRVPASYKVPT--SSCPQVLLKEWIRSKYEREEFRHPEALT 53
+ + GN + E + + + ++ +RS + P L
Sbjct: 78 IDKGGNKKCQTYLENYGISDFIPERKYRTKAADHYRKILRSIVHNVDPPAPLPLD 132
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 35.1 bits (81), Expect = 0.026
Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 21/151 (13%)
Query: 181 REGWLWKTGP--KNADAYRKRWFTL-DYRKLMYHEEPLSAYPKGEIFLG--HCSDGYTVR 235
+EGWL K G K +R R+F L + + ++E + E L + ++
Sbjct: 8 KEGWLHKRGEYIKT---WRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMK 64
Query: 236 LGVPPGAKDQGFTFTLKTPQ----RWYQFSALSAPDRDQWIQAVQTGFTFTLKTPQRWYQ 291
P TF ++ Q F + +R++W A+QT LK
Sbjct: 65 TERPR-----PNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQT-VADGLKKQAAAEM 118
Query: 292 FSALSAPDRDQWIQAVQTVLDTP---LTPQD 319
+P + + ++ L P +T +
Sbjct: 119 DFRSGSPSDNSGAEEMEVSLAKPKHRVTMNE 149
Score = 31.2 bits (71), Expect = 0.45
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 61 GFLMKRGKESGKYHPRRFVLNEINDTIKYYVKEKKEPKATLRISELNVVIAPSKI 115
G+L KRG+ + PR F+L ND KE+ + N +A ++
Sbjct: 10 GWLHKRGEYIKTWRPRYFLLK--NDGTFIGYKERPQDVDQREAPLNNFSVAQCQL 62
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 35.0 bits (80), Expect = 0.034
Identities = 18/148 (12%), Positives = 37/148 (25%), Gaps = 15/148 (10%)
Query: 138 HEESQSIMNWYHAIRNAKFHRLQVAFPSANDSELVKLLTRDFGREGWLWKTGPK------ 191
E S + ++ + N KLL G L+KT
Sbjct: 217 KENSDRLEWIQAHVQCEGLAEQLIFNSLTNCLGPRKLL-----HSGKLYKTKSNKELHGF 271
Query: 192 ---NADAYRKRWFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVPPGAKDQGFT 248
+ + + +++ V + +P
Sbjct: 272 LFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLN-EVLVKLPTDPSSDEPV 330
Query: 249 FTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
F + R Y + +R W+Q ++
Sbjct: 331 FHISHIDRVYTLRTDNINERTAWVQKIK 358
Score = 31.5 bits (71), Expect = 0.33
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 279 FTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 308
F + R Y + +R W+Q ++
Sbjct: 329 PVFHISHIDRVYTLRTDNINERTAWVQKIK 358
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 34.9 bits (80), Expect = 0.034
Identities = 4/77 (5%), Positives = 17/77 (22%)
Query: 236 LGVPPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFTFTLKTPQRWYQFSAL 295
+ + + + L +++ F +
Sbjct: 364 YCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTR 423
Query: 296 SAPDRDQWIQAVQTVLD 312
+ +W++A +
Sbjct: 424 KPEQKQRWLKAFARERE 440
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 33.3 bits (76), Expect = 0.097
Identities = 8/74 (10%), Positives = 25/74 (33%)
Query: 239 PPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFTFTLKTPQRWYQFSALSAP 298
+ + + Y+ + D + +++ F K + + F A
Sbjct: 290 KDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLE 349
Query: 299 DRDQWIQAVQTVLD 312
++ +W++A +
Sbjct: 350 EKIRWLRAFREERK 363
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 32.9 bits (75), Expect = 0.13
Identities = 8/72 (11%), Positives = 24/72 (33%)
Query: 242 AKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFTFTLKTPQRWYQFSALSAPDRD 301
K +G ++ LK + F ++ + F + Y+ + +
Sbjct: 265 CKRRGDSYDLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRELKK 324
Query: 302 QWIQAVQTVLDT 313
+W++ + +
Sbjct: 325 KWMEQFEMAISN 336
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 33.1 bits (75), Expect = 0.14
Identities = 4/47 (8%), Positives = 15/47 (31%)
Query: 266 PDRDQWIQAVQTGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTVLD 312
D+ + F + Y+ + + +W++ + +
Sbjct: 461 SSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAIS 507
Score = 29.6 bits (66), Expect = 1.5
Identities = 3/31 (9%), Positives = 11/31 (35%)
Query: 246 GFTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
F + Y+ + + +W++ +
Sbjct: 473 MFLLIEDQGAQGYELFFKTRELKKKWMEQFE 503
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 125
Score = 30.7 bits (69), Expect = 0.21
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 181 REGWLWKTGPKNADAYRKR-WFTLDYRKLMYHEEPLSAYPKGEIFLGHCSDGYTVRLGVP 239
REGW+ N D RKR ++ LD + + + + EI L + +
Sbjct: 10 REGWVVHYS--NKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSL 67
Query: 240 PGAKDQGFTFTLKTPQRWY 258
F + T Y
Sbjct: 68 VPPGTNPHCFEIVTANATY 86
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3;
arfgap domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 149
Score = 30.3 bits (68), Expect = 0.37
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 1 MKQIGNNVSKLKYEMRVPASYKVPT--SSCPQVLLKEWIRSKYEREEFRHPEALT 53
M+ GN + + ++ +S L +E I+S + +H L
Sbjct: 86 MQVGGNASASSFFHQHGCSTNDTNAKYNSRAAQLYREKIKSLASQATRKHGTDLW 140
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 30.7 bits (69), Expect = 0.56
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 279 FTFTLKTPQRWYQFSALSAPDRDQWIQAVQTVLD 312
F + Y A + + W+ A++ VL
Sbjct: 292 FEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLT 325
Score = 29.5 bits (66), Expect = 1.3
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 220 KGEIFLGHCSDGYTVRLGVPPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
K + + + V K F + Y A + + W+ A++
Sbjct: 271 KQSLNM----TAVGITENVKGDTKK--FEIWYNAREEVYIIQAPTPEIKAAWVNAIR 321
>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type
lectin, glycoprotein, cell adhesion, calcium-binding,
heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16
g.75.1.1
Length = 350
Score = 30.7 bits (69), Expect = 0.61
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 16/57 (28%)
Query: 150 AIRNAKFHRLQVAFPSANDSELVKLLTRDFGREGWLWKTGPKNADAYRKRWFTLDYR 206
+RNA +H + N V+ L D GW T AYR + L +R
Sbjct: 255 HLRNALWH-------TGNTPGQVRTLWHDPRHIGWKDFT------AYR---WRLSHR 295
>3hwo_A Isochorismate synthase ENTC; chorismate-utilizing enzymes,
siderophore, enterobactin, enterobactin biosynthesis,
ION T iron, iron transport; HET: ISC; 2.30A {Escherichia
coli}
Length = 394
Score = 30.4 bits (69), Expect = 0.71
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 7/68 (10%)
Query: 246 GFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTGFTF-TLKTPQRWYQFSALSAPDRDQWI 304
F + P S+L P+ Q + + Q + P++ +
Sbjct: 80 AIPFDPRQP------SSLYIPESWQSFSRQEKQASARRFTRSQSLNVVERQAIPEQTTFE 133
Query: 305 QAVQTVLD 312
Q V
Sbjct: 134 QMVARAAA 141
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 30.0 bits (67), Expect = 1.00
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 247 FTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
FT + Y+ A + +R W +
Sbjct: 491 VLFTWDQEAQIYELVAQTVSERKNWCALIT 520
Score = 30.0 bits (67), Expect = 1.00
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 279 FTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 308
FT + Y+ A + +R W +
Sbjct: 491 VLFTWDQEAQIYELVAQTVSERKNWCALIT 520
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 30.1 bits (68), Expect = 1.0
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 247 FTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
+F + + + A ++ QW+ ++
Sbjct: 313 VSFKNGSQSQTHSLQANDTFNKQQWLNCIR 342
Score = 30.1 bits (68), Expect = 1.0
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 279 FTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 308
+F + + + A ++ QW+ ++
Sbjct: 313 VSFKNGSQSQTHSLQANDTFNKQQWLNCIR 342
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 29.9 bits (67), Expect = 1.2
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 12/128 (9%)
Query: 155 KFHRLQVAFPSANDSELVKLLTRDFGREGWLWKTGPKNADAYRKRWF-----TLDYRKLM 209
K + +Q ++ + +F EG L + G K +R + K
Sbjct: 224 KMNEIQKNIDGWEGKDIGQC-CNEFIMEGTLTRVGAK-----HERHIFLFDGLMICCKSN 277
Query: 210 YHEEPLSAYPKGEIFLGHCSDGYTVRLGVPPGAKDQGFTFTLK-TPQRWYQFSALSAPDR 268
+ + L E L V++ + F + + FSA SA ++
Sbjct: 278 HGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEK 337
Query: 269 DQWIQAVQ 276
+ W+ A+
Sbjct: 338 NNWMAALI 345
Score = 28.0 bits (62), Expect = 4.6
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 279 FTFTLK-TPQRWYQFSALSAPDRDQWIQAVQTVL 311
F + + FSA SA +++ W+ A+ ++
Sbjct: 315 HAFEIILKDENSVIFSAKSAEEKNNWMAALISLQ 348
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 29.5 bits (66), Expect = 1.4
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 247 FTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
FT + Y+ A + +R W +
Sbjct: 338 VLFTWDQEAQIYELVAQTVSERKNWCALIT 367
Score = 29.5 bits (66), Expect = 1.4
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 279 FTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 308
FT + Y+ A + +R W +
Sbjct: 338 VLFTWDQEAQIYELVAQTVSERKNWCALIT 367
>3os6_A Isochorismate synthase DHBC; structural genomics, center for
structural genomics of infec diseases, csgid, isomerase;
HET: MSE 15P; 2.40A {Bacillus anthracis}
Length = 399
Score = 28.9 bits (65), Expect = 2.3
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 261 SALSAPDRDQWIQAVQTGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTVLD 312
L P+ + + +Q T L+ + F PD + +++ V+ ++
Sbjct: 83 VQLIVPEYSRISERLQLDPTNHLEINRN-LTFEMTPVPDHEVYMKGVKQGIE 133
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 28.8 bits (64), Expect = 2.6
Identities = 8/49 (16%), Positives = 20/49 (40%)
Query: 264 SAPDRDQWIQAVQTGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQTVLD 312
SA + + + + P+R + S R ++++V ++L
Sbjct: 318 SADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILR 366
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 27.6 bits (61), Expect = 3.1
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 11/100 (11%)
Query: 181 REGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSAYP---KGEIFLGHCSDGYTVRLG 237
+ + + +R+F L L+ +G+I + G V
Sbjct: 32 SQVVMQHGACEEK---EERYFLLFSSVLIMLSASPRMSGFMYQGKIPI----AGMVVNRL 84
Query: 238 VPPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQT 277
D F T T +R + D +W++ +
Sbjct: 85 DEIEGSDCMFEITGSTVER-IVVHCNNNQDFQEWMEQLNR 123
Score = 26.8 bits (59), Expect = 5.5
Identities = 3/34 (8%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 279 FTFTLKTP-QRWYQFSALSAPDRDQWIQAVQTVL 311
F + + D +W++ + +
Sbjct: 92 CMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLT 125
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.1
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 2 KQIGNNVSKLKYEMRVPASYKVPTSSCPQVLLK 34
KQ + KL+ +++ Y S+ P + +K
Sbjct: 19 KQ---ALKKLQASLKL---Y-ADDSA-PALAIK 43
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 27.1 bits (60), Expect = 3.2
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 281 FTLKTPQRWYQFSALSAPDRDQWIQAVQTV 310
F L F A +A + +W++ ++
Sbjct: 76 FKLLMFPESRIFQAENAKIKREWLEVLEET 105
Score = 27.1 bits (60), Expect = 3.9
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 249 FTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
F L F A +A + +W++ ++
Sbjct: 76 FKLLMFPESRIFQAENAKIKREWLEVLE 103
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 28.2 bits (63), Expect = 3.3
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 284 KTPQRWYQFSALSAPDRDQWIQAVQTVLD 312
T A S ++ WI+ ++ V+
Sbjct: 280 PTSDNKIVLKASSIENKQDWIKHIREVIQ 308
Score = 27.1 bits (60), Expect = 8.4
Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 5/58 (8%)
Query: 220 KGEIFLGHCSDGYTVRLGVPPGAKDQGFTFT-LKTPQRWYQFSALSAPDRDQWIQAVQ 276
K ++F V V T A S ++ WI+ ++
Sbjct: 251 KSKLFT----SELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIR 304
>3s6n_2 SurviVal of motor neuron protein-interacting PROT; SMN complex,
SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS,
snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo
sapiens}
Length = 280
Score = 27.9 bits (61), Expect = 4.8
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 288 RWYQFSALSAPDRDQWIQAVQTVLDTPLTPQDH 320
W+ + P+ +W+ A+ L+ PL P+ H
Sbjct: 200 NWFGERDFT-PELGRWLYALLACLEKPLLPEAH 231
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding,
protein-DNA complex, isomerase/DNA complex; HET: DNA;
1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A
Length = 314
Score = 27.4 bits (60), Expect = 6.6
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 17/104 (16%)
Query: 59 MDGFLMKRGKESGKYHPRRFVLNEINDTIKY-YVKEKKEPKATLRISELNVVIAPSKIEH 117
M K GK + F+ ++ Y ++ K P +VV+ E
Sbjct: 1 MRALFYKDGK---LFTDNNFLNPVSDNNPAYEVLQHVKIPTH-----LTDVVVYGQTWEE 52
Query: 118 PHSLQLTFMKDGSTRHIYVYHEESQSIMNWYHAIRNA-KFHRLQ 160
+ + D R Y Y + + RNA +
Sbjct: 53 ALTRLIFVGSDSKGRRQYFYGKM-------HVQNRNAKRDRIFV 89
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 27.0 bits (59), Expect = 6.7
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 236 LGVPPGAKDQGFTFTLKTPQR---WYQFSALSAPDRDQWIQAVQ 276
L V A ++ F + + A S +R+ WIQ +Q
Sbjct: 125 LIVREVAHEEKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQ 168
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal
transduction protein, hydrolase; HET: I3P; 1.90A {Rattus
norvegicus} SCOP: b.55.1.1
Length = 131
Score = 26.4 bits (58), Expect = 7.1
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 15/105 (14%)
Query: 183 GWLWKTGPKNADAYRKRWFTL--DYRKLMYHEEPLSAYPKG---------EIFLGHCSDG 231
L K + R+R++ L D + + + P+ E+ +GH ++G
Sbjct: 17 SQLLKVKSSSW--RRERFYKLQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEG 74
Query: 232 YTVRLGVPPGAKDQGFTFTLKTPQRWYQFSALSAPDRDQWIQAVQ 276
+D+ F+ K + A S D W+Q ++
Sbjct: 75 L--EKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLR 117
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural
genomics, structural genomics consortium, SGC, metal
binding protein; 1.80A {Homo sapiens}
Length = 144
Score = 26.5 bits (58), Expect = 7.2
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 1 MKQIGNNVSKLKYEMRVPASYKVPTSSCPQVLLKEWIRSKYERE 44
M+ GN + + + T + + R K +
Sbjct: 94 MQVGGNANATAFFRQHGCTANDANTKYNSRA--AQMYREKIRQL 135
>3mml_B Allophanate hydrolase subunit 1; structural genomics, PSI-2,
protein structure initiative, tuberculosis structural
genomics consortium; 2.50A {Mycobacterium smegmatis}
Length = 228
Score = 27.0 bits (60), Expect = 8.3
Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 25/147 (17%)
Query: 117 HPHSLQLTFMKDGST---------RHIYVYHEESQSIMNWYHAIRNAKFHRLQVAFPSAN 167
H H + + + GST + + + + + ++ W +R A+ + P+A
Sbjct: 6 HHHHHENLYFQGGSTLGTVHNYGDQALLLEFDSTAEVLAWTETLREAELLGVVDIVPAAR 65
Query: 168 ------DSELVKLLTRDFGREGWLWKTGPKNADAYRKRWFTLDYRKLMYHEEPLSA---- 217
+ TR + + + + T+D Y L
Sbjct: 66 TVLVKLAGPRYQAPTRQRLGKLRVRPEAITHQPPGDRVDVTIDVV---YDGADLHEVASL 122
Query: 218 --YPKGEIFLGHCSDGYTVR-LGVPPG 241
++ H + V G PG
Sbjct: 123 TGMTPAQVIAAHTGTPWRVGFCGFAPG 149
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 27.2 bits (60), Expect = 9.4
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 254 PQRWYQFSALSAPDRDQWIQAVQ 276
P + Y+ AL++ D++ W++ ++
Sbjct: 382 PPQIYELVALTSSDKNTWMELLE 404
Score = 27.2 bits (60), Expect = 9.4
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 286 PQRWYQFSALSAPDRDQWIQAVQ 308
P + Y+ AL++ D++ W++ ++
Sbjct: 382 PPQIYELVALTSSDKNTWMELLE 404
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.425
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,039,213
Number of extensions: 291394
Number of successful extensions: 981
Number of sequences better than 10.0: 1
Number of HSP's gapped: 861
Number of HSP's successfully gapped: 220
Length of query: 321
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 227
Effective length of database: 4,077,219
Effective search space: 925528713
Effective search space used: 925528713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)