Query psy964
Match_columns 154
No_of_seqs 45 out of 47
Neff 2.6
Searched_HMMs 46136
Date Sat Aug 17 00:51:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3840|consensus 100.0 2.9E-73 6.3E-78 498.0 6.3 129 3-131 211-352 (438)
2 KOG3840|consensus 99.9 1.6E-27 3.5E-32 210.1 1.5 85 1-85 269-367 (438)
3 cd03007 PDI_a_ERp29_N PDIa fam 36.9 16 0.00035 27.7 0.8 11 74-84 73-85 (116)
4 cd03065 PDI_b_Calsequestrin_N 36.7 25 0.00053 26.5 1.8 11 74-84 82-92 (120)
5 TIGR00268 conserved hypothetic 35.8 56 0.0012 26.7 3.8 62 13-81 189-250 (252)
6 KOG1576|consensus 34.6 34 0.00073 31.2 2.5 37 63-102 164-203 (342)
7 TIGR00731 ctc_TL5 ribosomal pr 30.9 28 0.00061 27.8 1.3 27 116-142 80-106 (176)
8 PRK05618 50S ribosomal protein 30.7 28 0.0006 28.2 1.3 27 116-142 86-112 (197)
9 COG0758 Smf Predicted Rossmann 28.0 50 0.0011 29.6 2.5 36 8-43 61-96 (350)
10 PF14278 TetR_C_8: Transcripti 27.4 46 0.00099 20.8 1.6 24 48-71 4-28 (77)
11 PRK05943 50S ribosomal protein 26.0 30 0.00065 24.8 0.6 25 54-79 41-67 (94)
12 COG1772 Uncharacterized protei 22.5 1E+02 0.0022 25.9 3.2 63 17-84 70-137 (178)
13 smart00594 UAS UAS domain. 22.3 1.6E+02 0.0036 21.1 3.9 56 18-84 24-91 (122)
14 PF07759 DUF1615: Protein of u 21.8 59 0.0013 29.5 1.8 35 44-79 177-215 (319)
15 PF06180 CbiK: Cobalt chelatas 20.9 65 0.0014 27.5 1.8 26 62-87 163-189 (262)
16 PF00925 GTP_cyclohydro2: GTP 20.1 64 0.0014 25.3 1.5 17 59-75 129-145 (169)
No 1
>KOG3840|consensus
Probab=100.00 E-value=2.9e-73 Score=498.01 Aligned_cols=129 Identities=63% Similarity=0.955 Sum_probs=122.0
Q ss_pred hhhhhhhhHHHHHHH-HHHhcceee---ee-------CcCCCCChhhhhhcc--CCcchhhhhhhhhhhHHHHHHHHhhc
Q psy964 3 RFFKYIENRDVAKQV-MKERGLKKI---RL-------GIEGYPTYKEKIYRS--TSTTMYRFFKYIENRDVAKQVMKERG 69 (154)
Q Consensus 3 rF~kyiEnr~vak~v-lkERGlkkI---~l-------gdEgYPp~mgEe~rq--ySs~LYRFfKYIENRdVakqvLKeRg 69 (154)
+|+.|||+.+++.|| ++++|-++| +| |||+|||||||+++| |||+||||||||||||||||||||||
T Consensus 211 QFe~fLEe~ILPLMVASAQ~GeRECHiVVLldDDvVdWDEEyPPQMGEEY~Q~vyST~lyRFFKYIENRDVAKqVlKeRG 290 (438)
T KOG3840|consen 211 QFSQFLEEIILPLMVASAQHGERECHLVVLLDDDVVDWDEEYPPQMGEEYTQVVYSTHLYRFFKYIENRDVAKQVLKERG 290 (438)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCceeEEEEEecCccccccccCCcccchhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 799999999999997 555554444 44 999999999999999 99999999999999999999999999
Q ss_pred ccccccccccCCchHHHhhhcCCCcceeEEeeecccccccchhcccccccceeeeeecCccc
Q psy964 70 LKKIRLGIEGYPTYKEKVKKRAGGRSDVIYNYVQRPFIHMSWEKEEAKSRHVDFQATLPLDW 131 (154)
Q Consensus 70 LKkirlgiEg~pt~kekvk~r~ggr~eviy~y~qrpfi~~swekee~ksrhvdfqcv~~~~~ 131 (154)
|||||||||||||+|||||+|||||+||||||||||||||||||||+||||||||||+|||-
T Consensus 291 LKKIRlGIEGYPThKEKikkRPGGRaEVIYnYVQRPFIhMSWEKEEaKSRHVDFQCVKSKS~ 352 (438)
T KOG3840|consen 291 LKKIRLGIEGYPTHKEKIKKRPGGRAEVIYNYVQRPFIHMSWEKEEAKSRHVDFQCVKSKSN 352 (438)
T ss_pred hhhEeeccccCcchHHHhhcCCCCCchhhHhhhcCcceeechhhhhccccccceeeeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999985
No 2
>KOG3840|consensus
Probab=99.93 E-value=1.6e-27 Score=210.12 Aligned_cols=85 Identities=52% Similarity=0.851 Sum_probs=78.5
Q ss_pred CchhhhhhhhHHHHHHHHHHhcceeeeeCcCCCCChhhhhhcc---CCcchhhhhh--hh---------hhhHHHHHHHH
Q psy964 1 MYRFFKYIENRDVAKQVMKERGLKKIRLGIEGYPTYKEKIYRS---TSTTMYRFFK--YI---------ENRDVAKQVMK 66 (154)
Q Consensus 1 ~~rF~kyiEnr~vak~vlkERGlkkI~lgdEgYPp~mgEe~rq---ySs~LYRFfK--YI---------ENRdVakqvLK 66 (154)
|||||||||||||||+||||||||||+||||||||++++++++ ..++||+|++ || ++|||+|||+|
T Consensus 269 lyRFFKYIENRDVAKqVlKeRGLKKIRlGIEGYPThKEKikkRPGGRaEVIYnYVQRPFIhMSWEKEEaKSRHVDFQCVK 348 (438)
T KOG3840|consen 269 LYRFFKYIENRDVAKQVLKERGLKKIRLGIEGYPTHKEKIKKRPGGRAEVIYNYVQRPFIHMSWEKEEAKSRHVDFQCVK 348 (438)
T ss_pred HHHHHHHHhhhHHHHHHHHHhChhhEeeccccCcchHHHhhcCCCCCchhhHhhhcCcceeechhhhhccccccceeeee
Confidence 7999999999999999999999999999999999999999988 6788999998 77 59999999999
Q ss_pred hhcccccccccccCCchHH
Q psy964 67 ERGLKKIRLGIEGYPTYKE 85 (154)
Q Consensus 67 eRgLKkirlgiEg~pt~ke 85 (154)
+|++.|+.-+...-|.--.
T Consensus 349 SKS~TNLAaAaADpP~~~~ 367 (438)
T KOG3840|consen 349 SKSNTNLAAAAADPPPQPA 367 (438)
T ss_pred ccCcccHHHhcCCCCcChh
Confidence 9999999988888776544
No 3
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=36.88 E-value=16 Score=27.65 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=9.4
Q ss_pred ccccc--cCCchH
Q psy964 74 RLGIE--GYPTYK 84 (154)
Q Consensus 74 rlgiE--g~pt~k 84 (154)
+.||. ||||.+
T Consensus 73 ~y~I~~~gyPTl~ 85 (116)
T cd03007 73 RYKLDKESYPVIY 85 (116)
T ss_pred HhCCCcCCCCEEE
Confidence 68998 999974
No 4
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=36.65 E-value=25 Score=26.45 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=9.4
Q ss_pred ccccccCCchH
Q psy964 74 RLGIEGYPTYK 84 (154)
Q Consensus 74 rlgiEg~pt~k 84 (154)
+.||.|+||.+
T Consensus 82 ~~~I~~iPTl~ 92 (120)
T cd03065 82 KLGLDEEDSIY 92 (120)
T ss_pred HcCCccccEEE
Confidence 68999999983
No 5
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=35.78 E-value=56 Score=26.66 Aligned_cols=62 Identities=18% Similarity=0.409 Sum_probs=42.4
Q ss_pred HHHHHHHHhcceeeeeCcCCCCChhhhhhccCCcchhhhhhhhhhhHHHHHHHHhhcccccccccccCC
Q psy964 13 VAKQVMKERGLKKIRLGIEGYPTYKEKIYRSTSTTMYRFFKYIENRDVAKQVMKERGLKKIRLGIEGYP 81 (154)
Q Consensus 13 vak~vlkERGlkkI~lgdEgYPp~mgEe~rqySs~LYRFfKYIENRdVakqvLKeRgLKkirlgiEg~p 81 (154)
.|...|++.|++.+|+-..|-.. -.|+ ....+- +.+++|+..-+.||+-|.+.+.|=++||=
T Consensus 189 ~~E~~l~~~g~~~~rvr~~~~~a-~ie~---~~~~~~---~~~~~~~~i~~~~~~~gf~~v~ldl~g~~ 250 (252)
T TIGR00268 189 EAEEVLRNAGVGQVRVRNYDNLA-VIEV---PEDELS---KLLNEAEEVRDKFKDIGFRKVLIDLEGYR 250 (252)
T ss_pred HHHHHHHHcCCCeEEEEecCCeE-EEEE---CHHHHH---HHHhhHHHHHHHHHHcCCCeEEEccCCcc
Confidence 44557888999998886433211 1111 222333 34456899999999999999999999994
No 6
>KOG1576|consensus
Probab=34.60 E-value=34 Score=31.21 Aligned_cols=37 Identities=46% Similarity=0.838 Sum_probs=26.4
Q ss_pred HHHHhhcccccc-cccccCCch--HHHhhhcCCCcceeEEeee
Q psy964 63 QVMKERGLKKIR-LGIEGYPTY--KEKVKKRAGGRSDVIYNYV 102 (154)
Q Consensus 63 qvLKeRgLKkir-lgiEg~pt~--kekvk~r~ggr~eviy~y~ 102 (154)
+-||..| ||| +||-|||-- ++=. +|+-|+..|+-+|-
T Consensus 164 e~lk~~G--k~RfiGitgypldvl~~~a-e~~~G~~dvvlsY~ 203 (342)
T KOG1576|consen 164 EELKQEG--KIRFIGITGYPLDVLTECA-ERGKGRLDVVLSYC 203 (342)
T ss_pred HHHHhcC--ceeEeeecccchHHHHHHH-hcCCCceeeehhhh
Confidence 3455555 566 999999964 4433 56668999998875
No 7
>TIGR00731 ctc_TL5 ribosomal protein L25, Ctc-form. The C-terminal domain of sll1824, an apparent L25 of Synechocystis PCC6803, matches the N-terminal domain of this family. Examples of L25 and Ctc are not separated by a UPGMA tree built on the region of shared homology.
Probab=30.92 E-value=28 Score=27.76 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=18.3
Q ss_pred ccccceeeeeecCccccccceeeccCC
Q psy964 116 AKSRHVDFQATLPLDWISDNIEFNLRG 142 (154)
Q Consensus 116 ~ksrhvdfqcv~~~~~~~~ni~~n~~g 142 (154)
..--|||||.|.....+.-.+-..+-|
T Consensus 80 ~~i~HvDF~~v~~~~~v~v~VPv~~~G 106 (176)
T TIGR00731 80 NEVIHVDFLEVVEGVKLKVEVPIKLIG 106 (176)
T ss_pred CCeEEEEeEEeCCCCEEEEEeeEEEec
Confidence 456799999998777665455444443
No 8
>PRK05618 50S ribosomal protein L25/general stress protein Ctc; Reviewed
Probab=30.67 E-value=28 Score=28.15 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=17.8
Q ss_pred ccccceeeeeecCccccccceeeccCC
Q psy964 116 AKSRHVDFQATLPLDWISDNIEFNLRG 142 (154)
Q Consensus 116 ~ksrhvdfqcv~~~~~~~~ni~~n~~g 142 (154)
.+--|||||.|....-+.-.|--.+-|
T Consensus 86 ~~i~HvDF~~v~~~~~v~v~VPv~~~G 112 (197)
T PRK05618 86 DFILHVDFLRVDAGEKVKVEVPVHFVG 112 (197)
T ss_pred CCEEeEEEEEeCCCCEEEEEeeEEEEc
Confidence 456799999998876664444444333
No 9
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=27.96 E-value=50 Score=29.60 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHhcceeeeeCcCCCCChhhhhhcc
Q psy964 8 IENRDVAKQVMKERGLKKIRLGIEGYPTYKEKIYRS 43 (154)
Q Consensus 8 iEnr~vak~vlkERGlkkI~lgdEgYPp~mgEe~rq 43 (154)
.+....++..+.+.|.|-|-++|++||+.--+...-
T Consensus 61 ~~~~~~~le~~~~~~~~~i~~~d~~YP~~Lk~i~~p 96 (350)
T COG0758 61 IELLELELEKIEKPGIKIITLGDEDYPKLLKEINDP 96 (350)
T ss_pred HHHHHHHHHHHHhcCCeEeccCCccchHHHHhccCC
Confidence 344455555788899999999999999988766553
No 10
>PF14278 TetR_C_8: Transcriptional regulator C-terminal region
Probab=27.41 E-value=46 Score=20.79 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=17.2
Q ss_pred hhhhhhhh-hhhHHHHHHHHhhccc
Q psy964 48 MYRFFKYI-ENRDVAKQVMKERGLK 71 (154)
Q Consensus 48 LYRFfKYI-ENRdVakqvLKeRgLK 71 (154)
+-..|.|+ |||+.-+.+|++.|-.
T Consensus 4 ~~~i~~~i~~n~~~~~~ll~~~~~~ 28 (77)
T PF14278_consen 4 LTEIFEYIYENRDFYKILLSPNGDP 28 (77)
T ss_pred HHHHHHHHHHhHHHHHHHHCCCCCH
Confidence 34567777 6999999888766543
No 11
>PRK05943 50S ribosomal protein L25; Reviewed
Probab=25.96 E-value=30 Score=24.83 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=14.6
Q ss_pred hhhhhHHHHHHHHhhcc--ccccccccc
Q psy964 54 YIENRDVAKQVMKERGL--KKIRLGIEG 79 (154)
Q Consensus 54 YIENRdVakqvLKeRgL--KkirlgiEg 79 (154)
.++.+++.+- |++.|. .-|.|-++|
T Consensus 41 ~v~~~el~k~-l~~~~~~~~~i~L~v~g 67 (94)
T PRK05943 41 VLDHKDVINL-QAKAEFYKEVITLVIDG 67 (94)
T ss_pred EEcHHHHHHH-HhcCCCcceEEEEEECC
Confidence 4567787774 466553 345666554
No 12
>COG1772 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.54 E-value=1e+02 Score=25.92 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=46.4
Q ss_pred HHHHhcc-eeeeeCcCCCCChhhhhhcc---CCcchhhhhhhhhhhHHHHHHHHhhcccc-cccccccCCchH
Q psy964 17 VMKERGL-KKIRLGIEGYPTYKEKIYRS---TSTTMYRFFKYIENRDVAKQVMKERGLKK-IRLGIEGYPTYK 84 (154)
Q Consensus 17 vlkERGl-kkI~lgdEgYPp~mgEe~rq---ySs~LYRFfKYIENRdVakqvLKeRgLKk-irlgiEg~pt~k 84 (154)
+|.|+|. +.+..--.|||||-|++-.- ++.. |-|+-=|||...|+-+++.= |-||=.|-|.-+
T Consensus 70 ~L~e~n~l~~~D~p~kgfp~qfG~vvaTTskPd~~-----k~i~p~dva~~~lr~ks~~~~iGLGr~GLPke~ 137 (178)
T COG1772 70 VLAESNKLHVIDKPKKGFPPQFGEVVATTSKPDEK-----KAIKPIDVAEEALRGKSFTFLIGLGRHGLPKEM 137 (178)
T ss_pred hhHhcCceEEeccccccCChhhCceeeeccCCCcc-----cccChhhHHHHHhcCCceEEEEecCCCCCcHHH
Confidence 4778874 45555678999999999543 4443 45667799999999999764 568888988533
No 13
>smart00594 UAS UAS domain.
Probab=22.35 E-value=1.6e+02 Score=21.14 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=36.2
Q ss_pred HHHhcceeeeeCcCCCCChhhhhhcc-CCcchhhhhh--hh---------hhhHHHHHHHHhhcccccccccccCCchH
Q psy964 18 MKERGLKKIRLGIEGYPTYKEKIYRS-TSTTMYRFFK--YI---------ENRDVAKQVMKERGLKKIRLGIEGYPTYK 84 (154)
Q Consensus 18 lkERGlkkI~lgdEgYPp~mgEe~rq-ySs~LYRFfK--YI---------ENRdVakqvLKeRgLKkirlgiEg~pt~k 84 (154)
.++.-+.-|-+..+..|++..=++.- -+..+-.+++ |+ |+++++.+ +++.||||..
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~-----------~~~~~~P~~~ 91 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQF-----------YKLDSFPYVA 91 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHh-----------cCcCCCCEEE
Confidence 34445677777888888877555443 4555555555 33 56666554 6888999975
No 14
>PF07759 DUF1615: Protein of unknown function (DUF1615); InterPro: IPR011673 This is a family of proteins of unknown function expressed by various bacterial species. Some members of this family (e.g. Q8Z8Z7 from SWISSPROT, Q8ZRF4 from SWISSPROT) are thought to be lipoproteins. Another member of this family (Q93SV8 from SWISSPROT) is thought to be involved in photosynthesis [].
Probab=21.84 E-value=59 Score=29.49 Aligned_cols=35 Identities=31% Similarity=0.563 Sum_probs=29.0
Q ss_pred CCcchhhhhhhh----hhhHHHHHHHHhhccccccccccc
Q psy964 44 TSTTMYRFFKYI----ENRDVAKQVMKERGLKKIRLGIEG 79 (154)
Q Consensus 44 ySs~LYRFfKYI----ENRdVakqvLKeRgLKkirlgiEg 79 (154)
|+..||||..|- -+|+.|||-.-+| |.-+.|...|
T Consensus 177 Y~~~lYRFADfNAG~YaSRNAAFQ~avsr-ltg~~LalDG 215 (319)
T PF07759_consen 177 YDDPLYRFADFNAGWYASRNAAFQSAVSR-LTGIKLALDG 215 (319)
T ss_pred CCccceeecccccchhhhhhHHHHHHHHH-hcCCeecCCC
Confidence 689999999865 7999999998887 6666777766
No 15
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=20.90 E-value=65 Score=27.50 Aligned_cols=26 Identities=27% Similarity=0.786 Sum_probs=20.1
Q ss_pred HHHHHhhcccccccc-cccCCchHHHh
Q psy964 62 KQVMKERGLKKIRLG-IEGYPTYKEKV 87 (154)
Q Consensus 62 kqvLKeRgLKkirlg-iEg~pt~kekv 87 (154)
..+|++.|.+|+-+| +||||+.-+=+
T Consensus 163 ~~~l~~~~~~~v~vgtvEG~P~~~~vi 189 (262)
T PF06180_consen 163 QAMLKKHGYPNVFVGTVEGYPSLEDVI 189 (262)
T ss_dssp HHHHHCCT-TTEEEEETTSSSBHHHHH
T ss_pred HHHHHhCCCCeEEEEEeCCCCCHHHHH
Confidence 467888999999888 79999986533
No 16
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=20.07 E-value=64 Score=25.28 Aligned_cols=17 Identities=35% Similarity=0.806 Sum_probs=13.6
Q ss_pred HHHHHHHHhhccccccc
Q psy964 59 DVAKQVMKERGLKKIRL 75 (154)
Q Consensus 59 dVakqvLKeRgLKkirl 75 (154)
.++-|+|++-|+++|||
T Consensus 129 gigaqIL~dLGV~~~rL 145 (169)
T PF00925_consen 129 GIGAQILRDLGVKKMRL 145 (169)
T ss_dssp HHHHHHHHHTT--SEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 47899999999999996
Done!