Query psy964
Match_columns 154
No_of_seqs 45 out of 47
Neff 2.6
Searched_HMMs 29240
Date Sat Aug 17 00:51:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lqo_A Putative glutaredoxin R 46.4 9.3 0.00032 26.0 1.8 36 60-95 19-54 (92)
2 1b75_A Protein (50S ribosomal 34.3 12 0.0004 25.9 0.8 11 116-126 84-94 (94)
3 2l1n_A Uncharacterized protein 25.2 18 0.00063 27.5 0.5 14 62-81 80-93 (120)
4 1u6t_A SH3 domain-binding glut 23.2 38 0.0013 24.7 1.8 34 59-92 20-53 (121)
5 3zzx_A Thioredoxin; oxidoreduc 21.9 32 0.0011 22.9 1.1 57 15-84 12-78 (105)
6 2bz1_A GTP cyclohydrolase II; 18.9 45 0.0015 26.3 1.6 17 59-75 131-147 (196)
7 1feu_A 50S ribosomal protein L 18.9 42 0.0015 26.4 1.4 25 116-141 81-105 (206)
8 3qmx_A Glutaredoxin A, glutare 15.9 71 0.0024 21.2 1.8 32 60-91 31-62 (99)
9 1t1v_A SH3BGRL3, SH3 domain-bi 15.4 1.1E+02 0.0036 19.5 2.5 37 56-92 19-55 (93)
10 2gol_A Matrix protein P17 (MA) 15.2 43 0.0015 25.9 0.6 12 84-95 17-28 (133)
No 1
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=46.44 E-value=9.3 Score=25.97 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=29.1
Q ss_pred HHHHHHHhhcccccccccccCCchHHHhhhcCCCcc
Q psy964 60 VAKQVMKERGLKKIRLGIEGYPTYKEKVKKRAGGRS 95 (154)
Q Consensus 60 VakqvLKeRgLKkirlgiEg~pt~kekvk~r~ggr~ 95 (154)
-||++|+++|++=--+=|+.-|...+.++...+|+.
T Consensus 19 ~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~ 54 (92)
T 2lqo_A 19 RLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNR 54 (92)
T ss_dssp HHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSS
T ss_pred HHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCC
Confidence 488999999998777888888888888888765543
No 2
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=34.26 E-value=12 Score=25.89 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=8.5
Q ss_pred ccccceeeeee
Q psy964 116 AKSRHVDFQAT 126 (154)
Q Consensus 116 ~ksrhvdfqcv 126 (154)
.+--|||||.|
T Consensus 84 ~~i~HvDF~~v 94 (94)
T 1b75_A 84 PKLQHIDFVRA 94 (94)
T ss_dssp CCCCEEEEEBC
T ss_pred CCeEEEEEEEC
Confidence 45679999975
No 3
>2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=25.20 E-value=18 Score=27.54 Aligned_cols=14 Identities=57% Similarity=1.049 Sum_probs=11.5
Q ss_pred HHHHHhhcccccccccccCC
Q psy964 62 KQVMKERGLKKIRLGIEGYP 81 (154)
Q Consensus 62 kqvLKeRgLKkirlgiEg~p 81 (154)
||+||+. ||..||-
T Consensus 80 KQlLKe~------LgFkGYk 93 (120)
T 2l1n_A 80 KQLLKEE------LGFAGYS 93 (120)
T ss_dssp TTHHHHT------TCCCCCC
T ss_pred HHHHHHh------cCCCcee
Confidence 7888887 8888883
No 4
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=23.21 E-value=38 Score=24.74 Aligned_cols=34 Identities=3% Similarity=-0.015 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcccccccccccCCchHHHhhhcCC
Q psy964 59 DVAKQVMKERGLKKIRLGIEGYPTYKEKVKKRAG 92 (154)
Q Consensus 59 dVakqvLKeRgLKkirlgiEg~pt~kekvk~r~g 92 (154)
.-||++|+++|++=--+=|.+=|..++.+.++.+
T Consensus 20 ~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 20 QDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 6799999999998777788888999998888874
No 5
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=21.85 E-value=32 Score=22.85 Aligned_cols=57 Identities=23% Similarity=0.200 Sum_probs=33.1
Q ss_pred HHHHHHhcceeee--eCcCCCCChhhhhh--cc----CCcchhhhhh--hhhhhHHHHHHHHhhcccccccccccCCchH
Q psy964 15 KQVMKERGLKKIR--LGIEGYPTYKEKIY--RS----TSTTMYRFFK--YIENRDVAKQVMKERGLKKIRLGIEGYPTYK 84 (154)
Q Consensus 15 k~vlkERGlkkI~--lgdEgYPp~mgEe~--rq----ySs~LYRFfK--YIENRdVakqvLKeRgLKkirlgiEg~pt~k 84 (154)
.+.|++.+-+-+. .|-+-.|||+.-.. .+ ++... |++ -=+|+++|. +.||.|+||..
T Consensus 12 ~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~--~~~vd~d~~~~l~~-----------~~~V~~~PT~~ 78 (105)
T 3zzx_A 12 TKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVV--FLKVDVDECEDIAQ-----------DNQIACMPTFL 78 (105)
T ss_dssp HHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEE--EEEEETTTCHHHHH-----------HTTCCBSSEEE
T ss_pred HHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCCeE--EEEEecccCHHHHH-----------HcCCCeecEEE
Confidence 3455665544433 47788998864331 11 33321 222 226888876 47999999964
No 6
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A
Probab=18.91 E-value=45 Score=26.30 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=15.9
Q ss_pred HHHHHHHHhhccccccc
Q psy964 59 DVAKQVMKERGLKKIRL 75 (154)
Q Consensus 59 dVakqvLKeRgLKkirl 75 (154)
.++-|+|++-|+++|||
T Consensus 131 gigAqIL~dLGV~~irL 147 (196)
T 2bz1_A 131 TLCADMFKLLGVNEVRL 147 (196)
T ss_dssp HHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHcCCCcEEc
Confidence 58999999999999997
No 7
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S rRNA-protein complex, cadmium IONS, ribosome; 2.30A {Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T 2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z 2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z 2wrl_Z 2wro_Z ...
Probab=18.90 E-value=42 Score=26.37 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=17.0
Q ss_pred ccccceeeeeecCccccccceeeccC
Q psy964 116 AKSRHVDFQATLPLDWISDNIEFNLR 141 (154)
Q Consensus 116 ~ksrhvdfqcv~~~~~~~~ni~~n~~ 141 (154)
.+--|||||-|.. ..+.-++--.+-
T Consensus 81 ~~i~HvDF~~v~~-~~v~v~VPv~~~ 105 (206)
T 1feu_A 81 RRPEHVDFFVLSD-EPVEMYVPLRFV 105 (206)
T ss_dssp SCEEEEEEEECCS-SCEEEEEEEEEE
T ss_pred CCeEEEEEEEECC-EEEEEEeeEEEE
Confidence 4567999999988 666544444433
No 8
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=15.91 E-value=71 Score=21.16 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=20.8
Q ss_pred HHHHHHHhhcccccccccccCCchHHHhhhcC
Q psy964 60 VAKQVMKERGLKKIRLGIEGYPTYKEKVKKRA 91 (154)
Q Consensus 60 VakqvLKeRgLKkirlgiEg~pt~kekvk~r~ 91 (154)
-|+.+|.+.|++=..+=|..-|..++.++...
T Consensus 31 ~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~ 62 (99)
T 3qmx_A 31 RALALLKRKGVEFQEYCIDGDNEAREAMAARA 62 (99)
T ss_dssp HHHHHHHHHTCCCEEEECTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHh
Confidence 46677777777655555666666666666554
No 9
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=15.41 E-value=1.1e+02 Score=19.54 Aligned_cols=37 Identities=8% Similarity=0.253 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHhhcccccccccccCCchHHHhhhcCC
Q psy964 56 ENRDVAKQVMKERGLKKIRLGIEGYPTYKEKVKKRAG 92 (154)
Q Consensus 56 ENRdVakqvLKeRgLKkirlgiEg~pt~kekvk~r~g 92 (154)
++-.-|+++|+++|++=-.+=|..-|..++.++.+.|
T Consensus 19 ~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g 55 (93)
T 1t1v_A 19 SQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAG 55 (93)
T ss_dssp HHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 3447789999999987555555566788888887765
No 10
>2gol_A Matrix protein P17 (MA); viral maturation, immature, GAG, HIV-1, viral protein; 2.20A {Human immunodeficiency virus 1} SCOP: a.61.1.1 PDB: 1hiw_A 2hmx_A 2h3f_A 2h3i_A* 2h3q_A* 2h3v_A* 2h3z_A* 1uph_A* 2nv3_A* 2jmg_A* 1tam_A
Probab=15.21 E-value=43 Score=25.89 Aligned_cols=12 Identities=42% Similarity=0.778 Sum_probs=10.4
Q ss_pred HHHhhhcCCCcc
Q psy964 84 KEKVKKRAGGRS 95 (154)
Q Consensus 84 kekvk~r~ggr~ 95 (154)
-|||+-|||||-
T Consensus 17 wEkIRLRPgGKK 28 (133)
T 2gol_A 17 WEKIRLRPGGKK 28 (133)
T ss_dssp HHHCBSSTTCSC
T ss_pred hheeeeccCCCc
Confidence 589999999975
Done!