RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy964
         (154 letters)



>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 32.4 bits (73), Expect = 0.035
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 3   RFFKYIENRDVAKQVMKERGLKKIRLGI-EGYPTYKEKIYRSTSTTMYRFFKYIENRDVA 61
              K ++  D A +VM++   +K +  + E      E++ ++             NR   
Sbjct: 93  EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI----------NNRIAD 142

Query: 62  KQVMKER 68
           K   ++ 
Sbjct: 143 KAFYQQP 149



 Score = 25.9 bits (56), Expect = 6.0
 Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 4/46 (8%)

Query: 50  RFFKYIENRDVA----KQVMKERGLKKIRLGIEGYPTYKEKVKKRA 91
              K ++  D A    +Q  +E+  K +    +      EK K   
Sbjct: 93  EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138


>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
           isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
          Length = 111

 Score = 28.4 bits (64), Expect = 0.48
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 6/37 (16%)

Query: 74  RLGIEGYPTYK-----EKVKKRAGGRS-DVIYNYVQR 104
           +  + GYPT       +KV + +GGR  D ++ +V  
Sbjct: 73  KYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109


>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
           like domain, redox, structural genomics, NPPSFA; NMR
           {Homo sapiens}
          Length = 133

 Score = 27.4 bits (61), Expect = 1.2
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 17/55 (30%)

Query: 56  ENRDVAKQVMKERGLKKIRLGIEGYPTYK-----EKVKKRAGGRS-DVIYNYVQR 104
            N+ +A +            GI G+PT K     E      GGR+   I +    
Sbjct: 71  VNQVLASRY-----------GIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALD 114


>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
           musculus} PDB: 3t59_A*
          Length = 519

 Score = 27.6 bits (60), Expect = 1.9
 Identities = 10/102 (9%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 29  GIEGYPTYKEKIYRSTSTTMYRFFKYIENRDVAKQVMKERGLKKIRLGIEGYPTYKEKVK 88
            I G+PT   + +++ +             +V    ++ R +  +    + +P     ++
Sbjct: 86  NIAGFPTV--RFFQAFTKNGSGATLPGAGANVQT--LRMRLIDALESHRDTWPPACPPLE 141

Query: 89  KRAGGRSDVIYNYVQRPFIHMSWEKEEAKSRHVDFQATLPLD 130
                  D  +   +  ++ + +E+E++              
Sbjct: 142 PAKLNDIDGFFTRNKADYLALVFEREDSYLGREVTLDLSQYH 183


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 3.3
 Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 10/50 (20%)

Query: 112 EKEEAKSRHVDFQATLPLDW-------ISDNIEFNLRGYKFITEIGTLVQ 154
                  R VD    LP+ W        +  ++F   G    + +G L  
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILDF---GPGGASGLGVLTH 517


>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
           structural genomics, NPPSFA; NMR {Mus musculus}
          Length = 140

 Score = 25.8 bits (57), Expect = 4.6
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 6/44 (13%)

Query: 66  KERGLKKIRLGIEGYPTYK----EKVKKRAGGRS-DVIYNYVQR 104
               L   +  + GYPT K     +     G R+ + I   V+ 
Sbjct: 79  SASMLAS-KFDVSGYPTIKILKKGQAVDYDGSRTQEEIVAKVRE 121


>1mek_A Protein disulfide isomerase; electron transport, redox-active
           center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
           c.47.1.2
          Length = 120

 Score = 25.7 bits (57), Expect = 5.0
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 9/48 (18%)

Query: 66  KERGLKKIRLGIEGYPTYK-------EKVKKRAGGRS-DVIYNYVQRP 105
           +E  L + + G+ GYPT K          K+   GR  D I N++++ 
Sbjct: 69  EESDLAQ-QYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKR 115


>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
           thioredoxin fold, oxidoreductase, reductive methylation;
           HET: MLY; 2.05A {Homo sapiens}
          Length = 244

 Score = 25.3 bits (55), Expect = 8.1
 Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 29  GIEGYPTYKEKIYRSTSTTMYRFFKYIENRDVAKQVMKERGLKKIRLGIEGYPTYKEKVK 88
            I G+PT   + + + +         +   DV  Q ++ER +  +    + +P     ++
Sbjct: 86  NIPGFPTV--RFFXAFTXNGSGAVFPVAGADV--QTLRERLIDALESHHDTWPPACPPLE 141

Query: 89  K 89
            
Sbjct: 142 P 142


>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; NMR {Homo sapiens}
          Length = 126

 Score = 25.0 bits (55), Expect = 8.9
 Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 6/45 (13%)

Query: 66  KERGLKKIRLGIEGYPTYK----EKVKKRAGGRS-DVIYNYVQRP 105
           ++ GL   R  I   PT       + ++  G R+     N++   
Sbjct: 65  EQPGLSG-RFIINALPTIYHCKDGEFRRYQGPRTKKDFINFISDK 108


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,471,237
Number of extensions: 139988
Number of successful extensions: 446
Number of sequences better than 10.0: 1
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 21
Length of query: 154
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,328,508
Effective search space: 298667052
Effective search space used: 298667052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)