Query psy9640
Match_columns 199
No_of_seqs 174 out of 1357
Neff 8.3
Searched_HMMs 46136
Date Sat Aug 17 00:52:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058|consensus 100.0 6.6E-30 1.4E-34 228.7 4.6 171 4-178 444-662 (716)
2 COG1116 TauB ABC-type nitrate/ 100.0 1.6E-29 3.5E-34 202.9 3.7 150 25-180 3-192 (248)
3 COG3842 PotA ABC-type spermidi 100.0 2.3E-29 5E-34 212.9 3.6 150 24-180 4-198 (352)
4 COG2274 SunT ABC-type bacterio 100.0 1.4E-29 3.1E-34 231.6 2.5 164 17-182 463-671 (709)
5 COG3839 MalK ABC-type sugar tr 99.9 4.2E-29 9E-34 210.3 -0.8 150 24-180 2-195 (338)
6 COG1136 SalX ABC-type antimicr 99.9 4.3E-28 9.2E-33 193.8 3.7 151 26-181 2-205 (226)
7 COG1126 GlnQ ABC-type polar am 99.9 5.5E-28 1.2E-32 189.9 3.7 147 26-179 3-196 (240)
8 COG1124 DppF ABC-type dipeptid 99.9 9.9E-28 2.2E-32 191.5 3.2 152 25-181 3-204 (252)
9 COG1125 OpuBA ABC-type proline 99.9 1.5E-27 3.2E-32 191.5 3.6 147 26-179 2-196 (309)
10 TIGR02868 CydC thiol reductant 99.9 2.1E-27 4.5E-32 212.9 3.6 150 24-178 333-528 (529)
11 COG4987 CydC ABC-type transpor 99.9 8.6E-27 1.9E-31 202.9 2.6 153 25-180 336-534 (573)
12 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.4E-26 3.1E-31 214.0 3.4 157 23-181 475-674 (710)
13 KOG0055|consensus 99.9 2E-26 4.4E-31 216.3 4.4 159 19-181 981-1187(1228)
14 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 3.3E-26 7.2E-31 185.5 4.9 147 24-181 3-201 (254)
15 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 8.6E-27 1.9E-31 214.8 1.3 156 24-181 450-647 (686)
16 COG1135 AbcC ABC-type metal io 99.9 2.8E-26 6.1E-31 188.5 3.8 149 26-179 2-202 (339)
17 PRK11174 cysteine/glutathione 99.9 1.9E-26 4E-31 209.1 2.8 152 24-181 348-546 (588)
18 COG1118 CysA ABC-type sulfate/ 99.9 3.7E-26 7.9E-31 187.6 3.9 149 25-180 2-199 (345)
19 COG2884 FtsE Predicted ATPase 99.9 5.2E-26 1.1E-30 175.5 3.9 151 26-182 2-200 (223)
20 COG1120 FepC ABC-type cobalami 99.9 5.4E-26 1.2E-30 185.0 4.1 146 25-180 2-200 (258)
21 KOG0055|consensus 99.9 4.1E-26 8.9E-31 214.3 3.5 158 20-181 345-550 (1228)
22 KOG0057|consensus 99.9 9.7E-26 2.1E-30 196.6 5.4 154 23-182 349-549 (591)
23 PRK11176 lipid transporter ATP 99.9 4.4E-26 9.5E-31 206.4 3.3 154 24-181 340-541 (582)
24 TIGR03375 type_I_sec_LssB type 99.9 4E-26 8.7E-31 210.6 2.8 154 24-181 462-662 (694)
25 TIGR00958 3a01208 Conjugate Tr 99.9 3.7E-26 8.1E-31 211.3 2.3 156 24-181 477-676 (711)
26 KOG0056|consensus 99.9 1.7E-25 3.6E-30 193.2 5.7 161 11-177 523-731 (790)
27 PRK11160 cysteine/glutathione 99.9 6.6E-26 1.4E-30 205.2 2.8 154 24-182 337-537 (574)
28 COG1132 MdlB ABC-type multidru 99.9 9.4E-26 2E-30 203.8 3.4 154 23-181 326-526 (567)
29 TIGR02857 CydD thiol reductant 99.9 1.5E-25 3.2E-30 201.0 4.2 154 24-181 319-519 (529)
30 TIGR02203 MsbA_lipidA lipid A 99.9 2.5E-25 5.5E-30 201.0 3.6 154 24-181 329-530 (571)
31 COG3638 ABC-type phosphate/pho 99.9 1.9E-25 4E-30 177.6 2.4 148 25-178 3-207 (258)
32 PTZ00265 multidrug resistance 99.9 3.1E-25 6.8E-30 217.0 4.2 157 24-181 1164-1421(1466)
33 PRK10790 putative multidrug tr 99.9 2.6E-25 5.7E-30 201.8 2.5 153 24-181 339-537 (592)
34 COG4608 AppF ABC-type oligopep 99.9 8.9E-25 1.9E-29 177.5 5.1 140 25-181 4-172 (268)
35 TIGR01193 bacteriocin_ABC ABC- 99.9 3.6E-25 7.7E-30 204.7 2.6 152 24-181 472-671 (708)
36 COG4618 ArpD ABC-type protease 99.9 3.9E-25 8.6E-30 191.4 2.4 161 20-183 329-536 (580)
37 TIGR01846 type_I_sec_HlyB type 99.9 4.1E-25 8.8E-30 203.9 2.4 154 24-181 454-654 (694)
38 PRK13657 cyclic beta-1,2-gluca 99.9 7.1E-25 1.5E-29 198.9 3.6 153 24-181 333-532 (588)
39 COG4988 CydD ABC-type transpor 99.9 1.9E-24 4E-29 190.3 4.8 151 25-181 320-517 (559)
40 COG1127 Ttg2A ABC-type transpo 99.9 1.4E-24 3E-29 173.1 3.2 156 23-183 6-210 (263)
41 TIGR02204 MsbA_rel ABC transpo 99.9 1.9E-24 4.2E-29 195.4 3.7 154 24-181 336-537 (576)
42 PLN03232 ABC transporter C fam 99.9 2.1E-24 4.5E-29 212.2 3.5 154 24-181 1233-1432(1495)
43 PLN03130 ABC transporter C fam 99.9 2.7E-24 5.9E-29 212.1 3.5 154 24-181 1236-1435(1622)
44 COG1123 ATPase components of v 99.9 3.8E-24 8.3E-29 188.6 3.8 155 24-180 279-491 (539)
45 PRK10789 putative multidrug tr 99.9 5E-24 1.1E-28 192.7 3.9 154 24-181 312-512 (569)
46 COG4525 TauB ABC-type taurine 99.9 1.3E-23 2.8E-28 163.2 5.3 151 25-180 3-194 (259)
47 COG1117 PstB ABC-type phosphat 99.9 7.9E-24 1.7E-28 166.2 3.8 152 24-180 6-209 (253)
48 COG3840 ThiQ ABC-type thiamine 99.9 2E-23 4.2E-28 160.5 5.6 143 26-181 2-192 (231)
49 TIGR00957 MRP_assoc_pro multi 99.9 6.6E-24 1.4E-28 209.0 3.8 155 23-181 1282-1482(1522)
50 TIGR01842 type_I_sec_PrtD type 99.9 1E-23 2.2E-28 189.8 4.0 155 24-181 315-516 (544)
51 PTZ00243 ABC transporter; Prov 99.9 7.8E-24 1.7E-28 208.5 3.2 155 24-182 1307-1508(1560)
52 COG4181 Predicted ABC-type tra 99.9 3E-23 6.4E-28 158.2 3.9 150 25-180 6-208 (228)
53 TIGR01192 chvA glucan exporter 99.9 1.4E-23 3E-28 190.4 2.5 153 24-181 333-532 (585)
54 COG1122 CbiO ABC-type cobalt t 99.9 8.3E-23 1.8E-27 165.4 6.5 151 25-181 3-201 (235)
55 TIGR03265 PhnT2 putative 2-ami 99.9 2.4E-23 5.2E-28 178.2 3.5 149 25-180 4-196 (353)
56 TIGR02314 ABC_MetN D-methionin 99.9 7.1E-23 1.5E-27 174.5 4.9 150 26-180 2-202 (343)
57 PRK11650 ugpC glycerol-3-phosp 99.9 4.8E-23 1E-27 176.6 3.6 150 25-180 3-196 (356)
58 PRK11432 fbpC ferric transport 99.9 4.7E-23 1E-27 176.3 3.4 149 25-180 6-198 (351)
59 TIGR01194 cyc_pep_trnsptr cycl 99.9 3.9E-23 8.6E-28 186.4 2.8 155 24-181 336-533 (555)
60 TIGR03258 PhnT 2-aminoethylpho 99.9 7.1E-23 1.5E-27 175.8 3.4 151 24-180 4-200 (362)
61 COG0444 DppD ABC-type dipeptid 99.9 7.7E-23 1.7E-27 169.5 3.4 154 26-180 2-215 (316)
62 PRK09452 potA putrescine/sperm 99.9 7.5E-23 1.6E-27 176.3 3.3 149 25-180 14-206 (375)
63 PRK11022 dppD dipeptide transp 99.9 6.4E-23 1.4E-27 174.0 2.5 152 25-180 3-215 (326)
64 PRK09473 oppD oligopeptide tra 99.9 7E-23 1.5E-27 174.0 2.6 156 21-180 8-223 (330)
65 TIGR01271 CFTR_protein cystic 99.9 5.9E-23 1.3E-27 201.9 2.0 153 24-181 1216-1414(1490)
66 TIGR00960 3a0501s02 Type II (G 99.9 1.7E-22 3.7E-27 161.7 3.9 150 26-181 2-200 (216)
67 PRK10851 sulfate/thiosulfate t 99.9 1.1E-22 2.3E-27 174.2 2.8 148 26-180 3-198 (353)
68 PLN03232 ABC transporter C fam 99.9 1.1E-22 2.3E-27 200.3 2.9 152 25-181 614-802 (1495)
69 PRK11607 potG putrescine trans 99.9 1.8E-22 3.9E-27 174.1 3.1 149 25-180 19-211 (377)
70 COG1123 ATPase components of v 99.9 2.5E-22 5.5E-27 177.1 3.9 155 25-180 5-216 (539)
71 PRK10522 multidrug transporter 99.9 2.6E-22 5.6E-27 180.9 3.8 153 24-181 321-512 (547)
72 cd03261 ABC_Org_Solvent_Resist 99.9 4.2E-22 9.1E-27 161.4 4.6 148 26-180 1-198 (235)
73 PLN03130 ABC transporter C fam 99.9 3.2E-22 6.9E-27 197.6 4.6 151 25-180 614-801 (1622)
74 PRK11308 dppF dipeptide transp 99.8 1.8E-22 3.8E-27 171.3 2.4 151 25-180 5-216 (327)
75 cd03252 ABCC_Hemolysin The ABC 99.8 3.1E-22 6.8E-27 162.3 3.5 152 26-181 1-199 (237)
76 PRK11000 maltose/maltodextrin 99.8 5.1E-22 1.1E-26 171.0 4.3 149 25-180 3-195 (369)
77 PTZ00265 multidrug resistance 99.8 4.5E-22 9.6E-27 195.0 3.7 156 25-181 382-642 (1466)
78 cd03244 ABCC_MRP_domain2 Domai 99.8 6E-22 1.3E-26 158.9 3.7 154 25-182 2-201 (221)
79 PRK15079 oligopeptide ABC tran 99.8 4E-22 8.8E-27 169.3 2.8 151 25-180 8-223 (331)
80 cd03289 ABCC_CFTR2 The CFTR su 99.8 4.2E-22 9E-27 165.3 2.7 152 25-181 2-199 (275)
81 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 8E-22 1.7E-26 157.9 3.9 151 26-181 1-203 (218)
82 cd03245 ABCC_bacteriocin_expor 99.8 7.6E-22 1.7E-26 158.2 3.4 57 25-82 2-58 (220)
83 PRK11153 metN DL-methionine tr 99.8 8.5E-22 1.8E-26 168.2 3.8 150 26-180 2-202 (343)
84 PRK15093 antimicrobial peptide 99.8 8E-22 1.7E-26 167.5 3.6 152 25-180 3-220 (330)
85 cd03265 ABC_DrrA DrrA is the A 99.8 1E-21 2.3E-26 157.6 4.0 149 26-181 1-194 (220)
86 cd03250 ABCC_MRP_domain1 Domai 99.8 9.9E-22 2.2E-26 156.0 3.7 154 26-182 1-191 (204)
87 cd03293 ABC_NrtD_SsuB_transpor 99.8 6.9E-22 1.5E-26 158.6 2.8 151 26-181 1-194 (220)
88 cd03226 ABC_cobalt_CbiO_domain 99.8 1E-21 2.2E-26 156.0 3.6 148 27-181 1-188 (205)
89 PRK13637 cbiO cobalt transport 99.8 6.2E-22 1.3E-26 165.2 2.4 150 26-180 3-206 (287)
90 COG4136 ABC-type uncharacteriz 99.8 1.9E-21 4.2E-26 145.5 4.7 155 26-186 3-202 (213)
91 PRK11247 ssuB aliphatic sulfon 99.8 1.3E-21 2.9E-26 160.8 3.9 151 24-181 11-196 (257)
92 cd03259 ABC_Carb_Solutes_like 99.8 1.3E-21 2.8E-26 156.2 3.6 149 26-181 1-193 (213)
93 TIGR02211 LolD_lipo_ex lipopro 99.8 1.5E-21 3.3E-26 156.6 3.8 151 26-181 2-204 (221)
94 cd03248 ABCC_TAP TAP, the Tran 99.8 1.5E-21 3.2E-26 157.3 3.5 65 18-83 4-69 (226)
95 cd03256 ABC_PhnC_transporter A 99.8 1.8E-21 3.8E-26 158.1 4.0 56 26-83 1-56 (241)
96 TIGR02315 ABC_phnC phosphonate 99.8 1.7E-21 3.6E-26 158.5 3.8 56 26-83 2-57 (243)
97 cd03263 ABC_subfamily_A The AB 99.8 1.4E-21 3E-26 156.7 3.1 149 26-181 1-194 (220)
98 cd03225 ABC_cobalt_CbiO_domain 99.8 2.4E-21 5.2E-26 154.4 4.1 149 27-181 1-196 (211)
99 TIGR02673 FtsE cell division A 99.8 1.8E-21 4E-26 155.4 3.4 149 26-181 2-199 (214)
100 cd03235 ABC_Metallic_Cations A 99.8 1.9E-21 4.1E-26 155.3 3.5 147 27-181 1-194 (213)
101 TIGR00954 3a01203 Peroxysomal 99.8 1.8E-21 4E-26 178.7 3.8 156 24-182 450-642 (659)
102 cd03254 ABCC_Glucan_exporter_l 99.8 2.1E-21 4.5E-26 156.6 3.6 57 25-83 2-58 (229)
103 cd03223 ABCD_peroxisomal_ALDP 99.8 3E-21 6.5E-26 148.9 4.0 132 26-180 1-149 (166)
104 cd03251 ABCC_MsbA MsbA is an e 99.8 2.4E-21 5.2E-26 156.7 3.6 57 26-83 1-57 (234)
105 PRK13646 cbiO cobalt transport 99.8 1.7E-21 3.6E-26 162.5 2.6 150 26-180 3-207 (286)
106 PRK11629 lolD lipoprotein tran 99.8 2.9E-21 6.4E-26 156.3 3.9 152 25-181 5-208 (233)
107 PRK13651 cobalt transporter AT 99.8 2E-21 4.2E-26 163.5 2.8 57 26-83 3-62 (305)
108 cd03301 ABC_MalK_N The N-termi 99.8 2.4E-21 5.2E-26 154.6 3.1 148 26-180 1-192 (213)
109 cd03292 ABC_FtsE_transporter F 99.8 2.9E-21 6.3E-26 154.2 3.5 57 26-84 1-57 (214)
110 cd03219 ABC_Mj1267_LivG_branch 99.8 3.7E-21 8E-26 155.8 4.1 55 26-83 1-55 (236)
111 cd03218 ABC_YhbG The ABC trans 99.8 3.9E-21 8.4E-26 155.3 4.2 147 26-180 1-194 (232)
112 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 2.6E-21 5.6E-26 156.9 3.1 150 26-182 2-196 (236)
113 cd03266 ABC_NatA_sodium_export 99.8 2.8E-21 6.1E-26 154.7 3.3 150 26-181 2-198 (218)
114 PRK11248 tauB taurine transpor 99.8 2.8E-21 6.1E-26 158.7 3.3 149 26-181 2-191 (255)
115 cd03296 ABC_CysA_sulfate_impor 99.8 3E-21 6.6E-26 156.8 3.4 55 26-83 3-57 (239)
116 PRK13640 cbiO cobalt transport 99.8 2.4E-21 5.3E-26 161.2 2.9 153 25-181 5-206 (282)
117 PRK13650 cbiO cobalt transport 99.8 2.9E-21 6.3E-26 160.5 3.3 152 25-181 4-203 (279)
118 TIGR01288 nodI ATP-binding ABC 99.8 4.3E-21 9.4E-26 161.2 4.2 148 25-180 4-196 (303)
119 cd03269 ABC_putative_ATPase Th 99.8 3.3E-21 7.1E-26 153.6 3.3 148 26-181 1-190 (210)
120 PRK11831 putative ABC transpor 99.8 3.4E-21 7.3E-26 159.3 3.4 151 23-180 5-205 (269)
121 cd03260 ABC_PstB_phosphate_tra 99.8 5.6E-21 1.2E-25 154.0 4.3 50 26-78 1-50 (227)
122 cd03264 ABC_drug_resistance_li 99.8 3.7E-21 8.1E-26 153.4 3.0 146 26-181 1-191 (211)
123 cd03231 ABC_CcmA_heme_exporter 99.8 3.6E-21 7.7E-26 152.7 2.9 150 26-183 1-189 (201)
124 cd03369 ABCC_NFT1 Domain 2 of 99.8 7.4E-21 1.6E-25 151.3 4.7 140 24-181 5-186 (207)
125 cd03253 ABCC_ATM1_transporter 99.8 3.6E-21 7.7E-26 155.9 2.9 56 26-83 1-56 (236)
126 TIGR03608 L_ocin_972_ABC putat 99.8 4.4E-21 9.6E-26 152.2 3.3 145 28-180 1-195 (206)
127 TIGR01189 ccmA heme ABC export 99.8 7.1E-21 1.5E-25 150.5 4.4 148 26-181 1-189 (198)
128 PRK13647 cbiO cobalt transport 99.8 3.7E-21 8.1E-26 159.5 2.9 149 25-180 4-199 (274)
129 PRK13634 cbiO cobalt transport 99.8 3E-21 6.4E-26 161.3 2.3 150 26-180 3-207 (290)
130 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 4.7E-21 1E-25 155.5 3.2 57 26-83 1-58 (238)
131 cd03295 ABC_OpuCA_Osmoprotecti 99.8 5.5E-21 1.2E-25 155.5 3.7 149 26-180 1-197 (242)
132 TIGR03005 ectoine_ehuA ectoine 99.8 5.4E-21 1.2E-25 156.5 3.6 55 26-83 1-55 (252)
133 PRK09544 znuC high-affinity zi 99.8 4.2E-21 9.1E-26 157.4 2.9 147 25-181 4-183 (251)
134 cd03268 ABC_BcrA_bacitracin_re 99.8 5.1E-21 1.1E-25 152.3 3.4 148 26-181 1-188 (208)
135 COG5265 ATM1 ABC-type transpor 99.8 9E-21 1.9E-25 161.4 4.9 131 23-156 260-416 (497)
136 TIGR01186 proV glycine betaine 99.8 4.5E-21 9.8E-26 164.5 3.1 140 34-180 2-191 (363)
137 PRK09536 btuD corrinoid ABC tr 99.8 6.3E-21 1.4E-25 165.5 4.0 148 25-180 3-200 (402)
138 PRK13537 nodulation ABC transp 99.8 7.7E-21 1.7E-25 160.0 4.4 149 24-180 6-199 (306)
139 cd03258 ABC_MetN_methionine_tr 99.8 7.3E-21 1.6E-25 153.9 4.0 151 26-181 2-203 (233)
140 PRK13539 cytochrome c biogenes 99.8 5.9E-21 1.3E-25 152.0 3.3 150 26-183 3-191 (207)
141 COG4175 ProV ABC-type proline/ 99.8 1.1E-20 2.4E-25 156.0 5.0 133 42-178 43-224 (386)
142 cd03262 ABC_HisP_GlnQ_permease 99.8 6.9E-21 1.5E-25 151.9 3.7 148 26-181 1-197 (213)
143 cd03224 ABC_TM1139_LivF_branch 99.8 5.4E-21 1.2E-25 153.4 3.1 148 26-181 1-194 (222)
144 cd03246 ABCC_Protease_Secretio 99.8 9.9E-21 2.2E-25 146.8 4.4 135 26-181 1-158 (173)
145 cd03247 ABCC_cytochrome_bd The 99.8 7.8E-21 1.7E-25 147.9 3.8 138 26-182 1-160 (178)
146 cd03230 ABC_DR_subfamily_A Thi 99.8 6.3E-21 1.4E-25 147.9 3.3 130 26-181 1-157 (173)
147 PRK14250 phosphate ABC transpo 99.8 5.2E-21 1.1E-25 155.7 2.9 150 25-181 3-194 (241)
148 PRK13635 cbiO cobalt transport 99.8 5.1E-21 1.1E-25 159.1 2.9 152 25-181 5-203 (279)
149 PRK13538 cytochrome c biogenes 99.8 4E-21 8.6E-26 152.7 2.1 151 26-184 2-194 (204)
150 PRK11264 putative amino-acid A 99.8 1.1E-20 2.5E-25 154.3 4.8 56 25-83 3-58 (250)
151 PRK13643 cbiO cobalt transport 99.8 5.1E-21 1.1E-25 159.7 2.9 149 26-180 2-205 (288)
152 PRK10908 cell division protein 99.8 8.8E-21 1.9E-25 152.4 3.8 149 26-181 2-199 (222)
153 PRK13536 nodulation factor exp 99.8 1E-20 2.2E-25 161.3 4.4 148 25-180 41-233 (340)
154 PRK13638 cbiO cobalt transport 99.8 4.5E-21 9.8E-26 158.7 2.1 56 26-84 2-57 (271)
155 PRK11124 artP arginine transpo 99.8 9E-21 2E-25 154.2 3.8 148 26-181 3-203 (242)
156 PRK10575 iron-hydroxamate tran 99.8 7.3E-21 1.6E-25 156.9 3.3 59 21-82 7-65 (265)
157 cd03214 ABC_Iron-Siderophores_ 99.8 4E-21 8.7E-26 149.9 1.6 139 27-181 1-160 (180)
158 PRK13648 cbiO cobalt transport 99.8 1E-20 2.2E-25 156.4 4.1 152 25-181 7-205 (269)
159 PRK10247 putative ABC transpor 99.8 1.1E-20 2.4E-25 152.3 3.9 151 25-182 7-201 (225)
160 PRK10584 putative ABC transpor 99.8 1.1E-20 2.4E-25 152.3 3.8 152 25-181 6-209 (228)
161 COG4619 ABC-type uncharacteriz 99.8 1.4E-20 3E-25 143.2 4.0 138 35-180 11-195 (223)
162 PRK09984 phosphonate/organopho 99.8 7.8E-21 1.7E-25 156.4 2.9 54 25-81 4-57 (262)
163 PRK11701 phnK phosphonate C-P 99.8 1.1E-20 2.4E-25 155.2 3.7 56 25-83 6-61 (258)
164 PRK13540 cytochrome c biogenes 99.8 1.6E-20 3.4E-25 148.8 4.4 149 26-182 2-190 (200)
165 PRK13636 cbiO cobalt transport 99.8 6.8E-21 1.5E-25 158.6 2.4 151 25-181 5-204 (283)
166 cd03232 ABC_PDR_domain2 The pl 99.8 2.3E-20 5E-25 147.0 5.2 137 25-180 3-169 (192)
167 PRK13633 cobalt transporter AT 99.8 6.5E-21 1.4E-25 158.5 2.1 152 25-181 4-207 (280)
168 PRK14247 phosphate ABC transpo 99.8 1.6E-20 3.4E-25 153.5 4.2 53 25-80 3-55 (250)
169 PRK13631 cbiO cobalt transport 99.8 1.3E-20 2.8E-25 159.5 3.8 59 24-83 20-81 (320)
170 cd03233 ABC_PDR_domain1 The pl 99.8 1.2E-20 2.6E-25 149.8 3.4 119 26-156 4-135 (202)
171 PRK13632 cbiO cobalt transport 99.8 1.3E-20 2.8E-25 156.0 3.6 153 25-182 7-206 (271)
172 cd03288 ABCC_SUR2 The SUR doma 99.8 1.5E-20 3.3E-25 154.4 4.0 61 22-83 16-76 (257)
173 cd03216 ABC_Carb_Monos_I This 99.8 5.5E-21 1.2E-25 147.0 1.3 122 26-180 1-143 (163)
174 PRK14257 phosphate ABC transpo 99.8 1.1E-20 2.3E-25 160.6 3.1 155 24-181 79-286 (329)
175 PRK15134 microcin C ABC transp 99.8 6E-21 1.3E-25 171.4 1.6 153 25-181 5-219 (529)
176 TIGR01978 sufC FeS assembly AT 99.8 1.8E-20 4E-25 152.3 4.3 62 26-90 1-63 (243)
177 PRK13543 cytochrome c biogenes 99.8 1.8E-20 3.9E-25 150.0 4.2 150 25-182 11-200 (214)
178 PRK14235 phosphate transporter 99.8 2E-20 4.4E-25 154.5 4.6 67 21-90 15-85 (267)
179 PRK13645 cbiO cobalt transport 99.8 8.8E-21 1.9E-25 158.3 2.4 59 24-83 5-66 (289)
180 TIGR03410 urea_trans_UrtE urea 99.8 1.5E-20 3.3E-25 151.7 3.5 149 26-181 1-194 (230)
181 PRK13652 cbiO cobalt transport 99.8 1.2E-20 2.6E-25 156.7 2.7 151 25-181 3-200 (277)
182 PRK11231 fecE iron-dicitrate t 99.8 1.8E-20 3.8E-25 153.7 3.6 55 26-83 3-57 (255)
183 PRK14273 phosphate ABC transpo 99.8 1.7E-20 3.6E-25 153.7 3.4 152 25-181 7-211 (254)
184 PRK11300 livG leucine/isoleuci 99.8 2.1E-20 4.4E-25 153.2 3.9 56 25-83 5-60 (255)
185 PRK09493 glnQ glutamine ABC tr 99.8 1.9E-20 4.1E-25 152.2 3.6 148 26-181 2-198 (240)
186 PRK10619 histidine/lysine/argi 99.8 2.5E-20 5.4E-25 153.0 4.3 58 23-83 3-60 (257)
187 COG4107 PhnK ABC-type phosphon 99.8 4.2E-20 9.2E-25 141.5 5.1 151 24-180 5-213 (258)
188 PRK10418 nikD nickel transport 99.8 2.1E-20 4.5E-25 153.3 3.6 150 25-181 4-203 (254)
189 cd03257 ABC_NikE_OppD_transpor 99.8 2.8E-20 6E-25 149.8 4.1 57 26-83 2-60 (228)
190 PRK15112 antimicrobial peptide 99.8 3.1E-20 6.6E-25 153.4 4.4 58 25-83 4-68 (267)
191 PRK13548 hmuV hemin importer A 99.8 2E-20 4.4E-25 153.8 3.3 55 26-83 3-57 (258)
192 PRK13641 cbiO cobalt transport 99.8 1.9E-20 4.1E-25 156.2 3.1 149 26-180 3-206 (287)
193 TIGR00972 3a0107s01c2 phosphat 99.8 3.2E-20 6.9E-25 151.5 4.4 53 26-81 2-54 (247)
194 PRK10070 glycine betaine trans 99.8 2.4E-20 5.1E-25 161.9 3.7 149 25-180 28-226 (400)
195 PRK10253 iron-enterobactin tra 99.8 2.2E-20 4.8E-25 154.1 3.4 58 23-83 5-62 (265)
196 PRK14241 phosphate transporter 99.8 4E-20 8.6E-25 151.9 4.9 63 25-90 4-70 (258)
197 COG4598 HisP ABC-type histidin 99.8 3.7E-20 8E-25 142.4 4.2 62 22-87 3-64 (256)
198 PRK14259 phosphate ABC transpo 99.8 3.8E-20 8.1E-25 153.1 4.4 52 25-79 13-64 (269)
199 cd03213 ABCG_EPDR ABCG transpo 99.8 6.2E-20 1.3E-24 144.9 5.5 137 25-180 3-172 (194)
200 PRK15056 manganese/iron transp 99.8 3.9E-20 8.5E-25 153.2 4.4 57 25-83 6-62 (272)
201 PRK10938 putative molybdenum t 99.8 3.3E-20 7.2E-25 165.1 4.2 147 26-180 4-196 (490)
202 PRK10895 lipopolysaccharide AB 99.8 4.2E-20 9.2E-25 150.2 4.5 56 25-83 3-58 (241)
203 PRK14269 phosphate ABC transpo 99.8 3.4E-20 7.5E-25 151.3 3.9 62 25-89 2-65 (246)
204 PRK13644 cbiO cobalt transport 99.8 2.4E-20 5.3E-25 154.6 3.1 149 26-181 2-198 (274)
205 cd03298 ABC_ThiQ_thiamine_tran 99.8 1.9E-20 4.1E-25 149.3 2.3 147 26-181 1-191 (211)
206 TIGR02769 nickel_nikE nickel i 99.8 3.5E-20 7.5E-25 152.9 4.0 57 26-83 3-66 (265)
207 COG4604 CeuD ABC-type enteroch 99.8 9.4E-20 2E-24 141.8 6.1 144 26-180 2-197 (252)
208 PRK14242 phosphate transporter 99.8 5.8E-20 1.3E-24 150.4 5.2 53 24-79 5-57 (253)
209 PRK14267 phosphate ABC transpo 99.8 5.5E-20 1.2E-24 150.5 4.9 62 25-89 4-69 (253)
210 PRK13549 xylose transporter AT 99.8 4.9E-20 1.1E-24 164.7 5.0 149 25-180 5-204 (506)
211 PRK14268 phosphate ABC transpo 99.8 3.9E-20 8.5E-25 152.0 4.0 57 21-80 8-64 (258)
212 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 1.9E-20 4.2E-25 141.2 2.0 112 26-181 1-129 (144)
213 cd03229 ABC_Class3 This class 99.8 2.7E-20 5.8E-25 145.0 2.7 55 26-83 1-55 (178)
214 TIGR02323 CP_lyasePhnK phospho 99.8 2.5E-20 5.3E-25 152.6 2.6 56 25-83 3-58 (253)
215 TIGR03740 galliderm_ABC gallid 99.8 4.1E-20 8.8E-25 148.6 3.8 148 26-181 1-186 (223)
216 TIGR03873 F420-0_ABC_ATP propo 99.8 3.4E-20 7.4E-25 152.1 3.4 56 25-83 1-56 (256)
217 PRK13649 cbiO cobalt transport 99.8 2.6E-20 5.6E-25 154.8 2.6 58 25-83 2-62 (280)
218 cd03228 ABCC_MRP_Like The MRP 99.8 4.7E-20 1E-24 142.7 3.9 135 26-182 1-158 (171)
219 PRK10261 glutathione transport 99.8 4.2E-20 9.2E-25 168.8 4.2 151 25-180 313-525 (623)
220 PRK13639 cbiO cobalt transport 99.8 3.5E-20 7.6E-25 153.7 3.3 149 26-181 2-199 (275)
221 PRK14240 phosphate transporter 99.8 6.5E-20 1.4E-24 149.8 4.8 53 24-79 2-54 (250)
222 PRK10744 pstB phosphate transp 99.8 3E-20 6.6E-25 152.8 2.8 54 23-79 11-64 (260)
223 PRK14272 phosphate ABC transpo 99.8 7.7E-20 1.7E-24 149.5 5.2 53 26-81 5-57 (252)
224 TIGR03269 met_CoM_red_A2 methy 99.8 3.9E-20 8.4E-25 165.8 3.7 50 26-78 1-50 (520)
225 COG1131 CcmA ABC-type multidru 99.8 7.9E-20 1.7E-24 152.9 5.3 145 25-180 4-198 (293)
226 TIGR00957 MRP_assoc_pro multi 99.8 3.4E-20 7.4E-25 182.9 3.6 151 25-181 636-824 (1522)
227 TIGR03411 urea_trans_UrtD urea 99.8 5.8E-20 1.3E-24 149.4 4.3 55 26-83 3-57 (242)
228 cd03294 ABC_Pro_Gly_Bertaine T 99.8 3.1E-20 6.6E-25 153.6 2.7 147 27-180 26-222 (269)
229 cd03234 ABCG_White The White s 99.8 9.3E-20 2E-24 146.9 5.4 54 25-79 3-58 (226)
230 PRK09700 D-allose transporter 99.8 4.8E-20 1E-24 164.8 4.1 148 25-180 5-206 (510)
231 TIGR03522 GldA_ABC_ATP gliding 99.8 5.5E-20 1.2E-24 154.4 4.1 146 26-180 3-193 (301)
232 PRK13642 cbiO cobalt transport 99.8 4.8E-20 1E-24 153.1 3.5 151 26-181 5-203 (277)
233 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 5.9E-20 1.3E-24 148.1 3.9 148 26-181 23-204 (224)
234 cd03217 ABC_FeS_Assembly ABC-t 99.8 5.6E-20 1.2E-24 145.7 3.6 139 26-180 1-165 (200)
235 PRK11144 modC molybdate transp 99.8 5.1E-20 1.1E-24 157.7 3.6 145 26-180 2-190 (352)
236 PRK15439 autoinducer 2 ABC tra 99.8 5.4E-20 1.2E-24 164.6 3.9 148 25-180 11-201 (510)
237 PRK10261 glutathione transport 99.8 3E-20 6.6E-25 169.7 2.2 58 25-83 12-71 (623)
238 PRK14256 phosphate ABC transpo 99.8 6.8E-20 1.5E-24 150.0 3.9 53 24-79 3-55 (252)
239 PRK11614 livF leucine/isoleuci 99.8 4.6E-20 9.9E-25 149.6 2.6 56 25-83 5-60 (237)
240 cd03290 ABCC_SUR1_N The SUR do 99.8 6.8E-20 1.5E-24 146.9 3.5 54 27-82 2-55 (218)
241 PRK14238 phosphate transporter 99.8 1.1E-19 2.4E-24 150.4 4.8 52 25-79 24-75 (271)
242 PRK14249 phosphate ABC transpo 99.8 6.9E-20 1.5E-24 149.9 3.4 54 25-81 4-57 (251)
243 TIGR02324 CP_lyasePhnL phospho 99.8 1.1E-19 2.3E-24 146.2 4.4 58 26-84 2-64 (224)
244 PRK14262 phosphate ABC transpo 99.8 9.8E-20 2.1E-24 148.8 4.0 53 25-80 3-55 (250)
245 KOG0054|consensus 99.8 6.6E-20 1.4E-24 175.7 3.4 154 23-180 1136-1335(1381)
246 PRK14243 phosphate transporter 99.8 1.2E-19 2.5E-24 149.8 4.3 52 25-79 10-61 (264)
247 PRK14254 phosphate ABC transpo 99.8 8.2E-20 1.8E-24 152.3 3.5 54 24-80 38-91 (285)
248 PRK09580 sufC cysteine desulfu 99.8 1.2E-19 2.7E-24 147.9 4.4 61 26-89 2-63 (248)
249 PRK10762 D-ribose transporter 99.8 1E-19 2.2E-24 162.4 4.2 149 25-181 4-203 (501)
250 PRK14248 phosphate ABC transpo 99.8 2E-19 4.2E-24 148.6 5.5 53 24-79 20-72 (268)
251 PRK14251 phosphate ABC transpo 99.8 1.1E-19 2.4E-24 148.6 4.0 52 25-79 4-55 (251)
252 TIGR02982 heterocyst_DevA ABC 99.8 8.4E-20 1.8E-24 146.6 3.1 150 26-180 2-203 (220)
253 COG4172 ABC-type uncharacteriz 99.8 1.4E-19 3E-24 153.7 4.5 154 23-180 4-219 (534)
254 PRK14260 phosphate ABC transpo 99.8 1.5E-19 3.3E-24 148.6 4.6 53 25-80 7-59 (259)
255 PRK14253 phosphate ABC transpo 99.8 2.2E-19 4.8E-24 146.6 5.4 53 25-80 3-55 (249)
256 TIGR01188 drrA daunorubicin re 99.8 1.1E-19 2.3E-24 152.8 3.6 139 34-180 2-185 (302)
257 PRK14237 phosphate transporter 99.8 1.8E-19 3.9E-24 148.8 4.9 53 25-80 20-72 (267)
258 PRK13547 hmuV hemin importer A 99.8 8.8E-20 1.9E-24 151.2 3.0 53 26-81 2-54 (272)
259 TIGR02633 xylG D-xylose ABC tr 99.8 1.6E-19 3.4E-24 161.2 4.8 148 26-180 2-202 (500)
260 PRK14255 phosphate ABC transpo 99.8 7.6E-20 1.7E-24 149.6 2.6 51 26-79 6-56 (252)
261 TIGR03269 met_CoM_red_A2 methy 99.8 1.2E-19 2.6E-24 162.6 4.1 153 25-181 279-490 (520)
262 PRK14271 phosphate ABC transpo 99.8 1.9E-19 4.2E-24 149.4 4.8 54 24-80 20-73 (276)
263 PRK15064 ABC transporter ATP-b 99.8 1.1E-19 2.4E-24 163.2 3.5 145 25-181 319-497 (530)
264 PRK14275 phosphate ABC transpo 99.8 2E-19 4.3E-24 150.0 4.7 152 25-181 39-243 (286)
265 TIGR01277 thiQ thiamine ABC tr 99.8 1.6E-19 3.4E-24 144.3 3.8 147 26-181 1-191 (213)
266 COG4555 NatA ABC-type Na+ tran 99.8 6.8E-20 1.5E-24 143.0 1.6 128 26-156 2-150 (245)
267 PRK14274 phosphate ABC transpo 99.8 2.6E-19 5.7E-24 147.1 5.1 52 25-79 12-63 (259)
268 COG0411 LivG ABC-type branched 99.8 5E-20 1.1E-24 147.4 0.7 149 26-180 5-211 (250)
269 cd03300 ABC_PotA_N PotA is an 99.8 2.1E-19 4.6E-24 145.4 4.4 149 26-181 1-193 (232)
270 PRK14264 phosphate ABC transpo 99.8 2.3E-19 5.1E-24 150.9 4.8 52 25-79 45-96 (305)
271 COG0410 LivF ABC-type branched 99.8 1.1E-19 2.4E-24 144.4 2.6 57 25-84 3-59 (237)
272 PRK11288 araG L-arabinose tran 99.8 2E-19 4.3E-24 160.6 4.5 148 25-180 4-201 (501)
273 PRK11819 putative ABC transpor 99.8 2.2E-19 4.9E-24 162.1 4.5 56 25-82 6-61 (556)
274 TIGR03415 ABC_choXWV_ATP choli 99.8 1.3E-19 2.9E-24 156.2 2.9 149 25-180 24-226 (382)
275 COG4172 ABC-type uncharacteriz 99.8 2.8E-19 6.1E-24 151.9 4.8 149 25-180 276-488 (534)
276 PRK14239 phosphate transporter 99.8 2.6E-19 5.6E-24 146.4 4.4 51 25-78 5-55 (252)
277 PRK10419 nikE nickel transport 99.8 2.6E-19 5.6E-24 148.0 4.3 56 26-82 4-66 (268)
278 cd03267 ABC_NatA_like Similar 99.8 2E-19 4.4E-24 146.0 3.6 137 40-181 34-216 (236)
279 PRK15064 ABC transporter ATP-b 99.8 2.4E-19 5.1E-24 161.1 4.4 54 26-82 2-55 (530)
280 PRK14265 phosphate ABC transpo 99.8 2.9E-19 6.3E-24 148.2 4.5 53 25-80 20-72 (274)
281 TIGR02142 modC_ABC molybdenum 99.8 2.2E-19 4.7E-24 154.0 3.7 142 30-180 4-193 (354)
282 PRK14270 phosphate ABC transpo 99.8 3.2E-19 7E-24 145.9 4.4 53 25-80 4-56 (251)
283 PRK14258 phosphate ABC transpo 99.8 2.4E-19 5.3E-24 147.6 3.7 53 25-80 7-59 (261)
284 CHL00131 ycf16 sulfate ABC tra 99.8 1.9E-19 4.1E-24 147.2 2.9 50 25-77 7-56 (252)
285 PRK10636 putative ABC transpor 99.8 1.5E-19 3.3E-24 165.5 2.4 148 25-180 312-488 (638)
286 cd03222 ABC_RNaseL_inhibitor T 99.8 2.4E-19 5.3E-24 139.6 3.2 110 29-181 4-134 (177)
287 PRK11147 ABC transporter ATPas 99.8 2E-19 4.4E-24 164.7 3.2 148 25-180 319-498 (635)
288 TIGR01166 cbiO cobalt transpor 99.8 2.9E-19 6.4E-24 140.3 3.6 135 40-180 5-188 (190)
289 PRK10771 thiQ thiamine transpo 99.8 2.1E-19 4.6E-24 145.3 2.9 147 26-181 2-192 (232)
290 PRK13541 cytochrome c biogenes 99.8 3.9E-19 8.5E-24 140.3 4.3 148 26-182 2-186 (195)
291 TIGR00968 3a0106s01 sulfate AB 99.8 2.4E-19 5.2E-24 145.6 3.1 55 26-83 1-55 (237)
292 COG1119 ModF ABC-type molybden 99.8 2.1E-19 4.5E-24 144.0 2.6 156 25-190 31-244 (257)
293 cd03215 ABC_Carb_Monos_II This 99.8 5.5E-19 1.2E-23 138.0 4.9 52 26-84 5-56 (182)
294 PRK14236 phosphate transporter 99.8 2.7E-19 6E-24 148.1 3.3 53 25-80 25-77 (272)
295 PRK14245 phosphate ABC transpo 99.8 5E-19 1.1E-23 144.7 4.8 51 25-78 3-53 (250)
296 PRK10982 galactose/methyl gala 99.8 3.7E-19 8.1E-24 158.5 4.3 145 28-180 1-195 (491)
297 PRK13549 xylose transporter AT 99.8 3.2E-19 7E-24 159.4 4.0 152 25-181 259-467 (506)
298 PRK10938 putative molybdenum t 99.8 9.5E-20 2.1E-24 162.2 0.5 52 25-79 260-311 (490)
299 PRK14261 phosphate ABC transpo 99.8 3.6E-19 7.9E-24 145.7 3.9 52 25-79 6-57 (253)
300 PRK15134 microcin C ABC transp 99.8 3.3E-19 7.1E-24 160.2 3.9 151 25-181 275-488 (529)
301 COG4167 SapF ABC-type antimicr 99.8 5.3E-19 1.1E-23 136.4 4.5 151 24-177 3-208 (267)
302 cd03299 ABC_ModC_like Archeal 99.8 3.9E-19 8.4E-24 144.2 3.8 148 26-181 1-192 (235)
303 PRK10636 putative ABC transpor 99.8 3.7E-19 8.1E-24 162.9 4.1 56 26-84 2-57 (638)
304 COG4559 ABC-type hemin transpo 99.8 5.4E-19 1.2E-23 139.0 4.4 54 26-82 2-55 (259)
305 PRK14244 phosphate ABC transpo 99.8 6E-19 1.3E-23 144.3 4.5 51 26-79 6-56 (251)
306 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 7.6E-19 1.7E-23 158.5 5.1 55 26-82 5-59 (552)
307 PRK14266 phosphate ABC transpo 99.7 6.9E-19 1.5E-23 143.8 4.2 51 26-79 4-54 (250)
308 COG4161 ArtP ABC-type arginine 99.7 8.1E-19 1.8E-23 133.0 4.1 58 25-86 2-59 (242)
309 PRK11147 ABC transporter ATPas 99.7 7.9E-19 1.7E-23 160.8 4.5 56 26-84 4-59 (635)
310 PRK13546 teichoic acids export 99.7 7.5E-19 1.6E-23 145.0 3.7 136 40-181 37-205 (264)
311 cd03237 ABC_RNaseL_inhibitor_d 99.7 6.3E-19 1.4E-23 144.1 3.2 141 33-181 1-178 (246)
312 cd03291 ABCC_CFTR1 The CFTR su 99.7 6.4E-19 1.4E-23 146.7 2.9 54 24-82 38-91 (282)
313 COG4778 PhnL ABC-type phosphon 99.7 2.2E-18 4.7E-23 131.6 5.6 153 25-181 4-214 (235)
314 PRK13409 putative ATPase RIL; 99.7 8.7E-19 1.9E-23 159.0 4.0 145 25-180 340-515 (590)
315 PRK13545 tagH teichoic acids e 99.7 1.1E-18 2.3E-23 154.8 4.5 150 25-180 21-204 (549)
316 PRK14246 phosphate ABC transpo 99.7 1.1E-18 2.4E-23 143.4 4.2 58 22-82 7-64 (257)
317 PRK11819 putative ABC transpor 99.7 7.9E-19 1.7E-23 158.6 3.6 56 25-83 324-379 (556)
318 PRK14252 phosphate ABC transpo 99.7 1.1E-18 2.4E-23 143.8 4.2 54 24-80 15-68 (265)
319 cd03297 ABC_ModC_molybdenum_tr 99.7 1.1E-18 2.3E-23 139.6 3.7 142 30-181 5-194 (214)
320 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 9.3E-19 2E-23 158.0 3.6 56 25-83 322-377 (552)
321 PLN03073 ABC transporter F fam 99.7 6.3E-19 1.4E-23 162.8 2.3 57 25-83 508-564 (718)
322 TIGR02633 xylG D-xylose ABC tr 99.7 1.1E-18 2.3E-23 155.8 3.6 63 25-88 257-320 (500)
323 COG0488 Uup ATPase components 99.7 2.9E-18 6.4E-23 153.0 5.5 58 25-85 3-60 (530)
324 PRK09700 D-allose transporter 99.7 2E-18 4.4E-23 154.4 4.0 53 25-82 265-317 (510)
325 KOG0054|consensus 99.7 2E-18 4.4E-23 165.6 4.1 133 23-156 516-660 (1381)
326 PRK14263 phosphate ABC transpo 99.7 3.2E-18 6.9E-23 141.0 4.5 52 26-80 9-60 (261)
327 cd03236 ABC_RNaseL_inhibitor_d 99.7 6E-18 1.3E-22 139.0 5.2 54 29-85 4-57 (255)
328 TIGR01257 rim_protein retinal- 99.7 4.2E-18 9.2E-23 169.5 5.0 169 6-180 1916-2131(2272)
329 TIGR01271 CFTR_protein cystic 99.7 2.5E-18 5.4E-23 169.4 3.0 134 40-180 439-609 (1490)
330 COG1129 MglA ABC-type sugar tr 99.7 4.2E-18 9.1E-23 149.5 3.6 145 25-177 8-203 (500)
331 TIGR01184 ntrCD nitrate transp 99.7 4.2E-18 9.2E-23 137.7 3.1 133 43-180 1-176 (230)
332 PLN03211 ABC transporter G-25; 99.7 1.3E-17 2.7E-22 153.2 6.3 61 27-90 70-131 (659)
333 TIGR02770 nickel_nikD nickel i 99.7 3.7E-18 8E-23 138.0 1.4 135 42-180 1-187 (230)
334 COG1137 YhbG ABC-type (unclass 99.7 6.3E-19 1.4E-23 137.4 -3.0 58 25-85 4-61 (243)
335 PRK15177 Vi polysaccharide exp 99.7 9.8E-18 2.1E-22 134.2 3.6 131 42-181 2-165 (213)
336 PLN03073 ABC transporter F fam 99.7 6.1E-18 1.3E-22 156.3 2.5 51 25-78 177-227 (718)
337 PRK03695 vitamin B12-transport 99.7 6.5E-18 1.4E-22 138.1 2.2 55 26-89 1-55 (248)
338 PRK10982 galactose/methyl gala 99.7 1.3E-17 2.7E-22 148.6 4.1 54 25-83 250-303 (491)
339 cd00267 ABC_ATPase ABC (ATP-bi 99.7 5.8E-18 1.3E-22 129.1 1.5 121 27-181 1-142 (157)
340 TIGR01257 rim_protein retinal- 99.7 2.5E-17 5.4E-22 164.1 4.7 149 25-180 928-1121(2272)
341 COG4133 CcmA ABC-type transpor 99.7 2.1E-17 4.6E-22 127.7 3.2 121 26-156 3-147 (209)
342 cd03238 ABC_UvrA The excision 99.7 2.3E-17 5E-22 128.4 3.0 121 39-181 7-151 (176)
343 PRK10762 D-ribose transporter 99.7 3.4E-17 7.3E-22 146.3 4.2 142 26-180 258-456 (501)
344 COG0488 Uup ATPase components 99.7 2.5E-17 5.5E-22 147.0 3.0 150 23-180 319-497 (530)
345 PRK11288 araG L-arabinose tran 99.7 2.9E-17 6.2E-22 146.7 3.3 51 26-83 258-308 (501)
346 COG4615 PvdE ABC-type sideroph 99.7 6.9E-17 1.5E-21 137.1 5.4 153 24-180 321-510 (546)
347 PRK13409 putative ATPase RIL; 99.7 2.9E-17 6.4E-22 149.1 3.3 52 31-85 79-130 (590)
348 PTZ00243 ABC transporter; Prov 99.7 2.3E-17 5E-22 163.0 2.7 114 40-156 673-799 (1560)
349 PRK10535 macrolide transporter 99.7 4.4E-17 9.5E-22 149.6 3.5 150 25-180 4-205 (648)
350 KOG0060|consensus 99.7 3.1E-17 6.8E-22 144.4 2.3 169 23-193 431-641 (659)
351 COG3845 ABC-type uncharacteriz 99.7 1.4E-16 3.1E-21 138.2 6.3 146 24-177 3-198 (501)
352 COG4178 ABC-type uncharacteriz 99.7 6.6E-17 1.4E-21 144.6 4.3 154 23-182 390-577 (604)
353 COG4148 ModC ABC-type molybdat 99.7 9.1E-17 2E-21 131.1 4.7 124 47-178 17-188 (352)
354 PRK15439 autoinducer 2 ABC tra 99.6 7.4E-17 1.6E-21 144.4 4.3 143 26-181 269-465 (510)
355 TIGR03771 anch_rpt_ABC anchore 99.6 2.2E-16 4.7E-21 127.2 3.8 35 49-83 1-35 (223)
356 cd03270 ABC_UvrA_I The excisio 99.6 2.9E-16 6.4E-21 126.8 4.1 31 40-71 8-38 (226)
357 TIGR00956 3a01205 Pleiotropic 99.6 5.4E-16 1.2E-20 152.2 6.3 64 26-90 760-827 (1394)
358 TIGR00955 3a01204 The Eye Pigm 99.6 6.7E-16 1.5E-20 141.1 5.6 41 39-80 37-77 (617)
359 COG1134 TagH ABC-type polysacc 99.6 5.1E-16 1.1E-20 124.5 4.1 135 40-181 40-209 (249)
360 PF00005 ABC_tran: ABC transpo 99.6 2.5E-17 5.4E-22 122.3 -3.5 41 43-84 1-41 (137)
361 COG4586 ABC-type uncharacteriz 99.6 6.4E-16 1.4E-20 125.7 2.0 137 40-180 37-218 (325)
362 PLN03140 ABC transporter G fam 99.6 1E-15 2.3E-20 150.3 3.8 54 25-79 867-931 (1470)
363 COG1101 PhnK ABC-type uncharac 99.6 1E-15 2.2E-20 120.8 2.7 57 26-83 2-61 (263)
364 COG0396 sufC Cysteine desulfur 99.5 3E-15 6.5E-20 119.1 1.6 53 25-79 3-55 (251)
365 TIGR00956 3a01205 Pleiotropic 99.5 1.1E-14 2.3E-19 143.2 5.5 50 40-90 74-126 (1394)
366 COG4152 ABC-type uncharacteriz 99.5 1.3E-14 2.9E-19 116.5 3.9 125 25-156 2-147 (300)
367 PLN03140 ABC transporter G fam 99.5 6.3E-14 1.4E-18 137.9 9.0 41 40-81 178-218 (1470)
368 KOG0064|consensus 99.5 1.3E-14 2.9E-19 126.9 3.7 157 23-185 479-675 (728)
369 cd03278 ABC_SMC_barmotin Barmo 99.5 1.4E-14 3E-19 114.7 3.4 35 44-80 14-48 (197)
370 KOG0927|consensus 99.5 2.7E-14 5.9E-19 125.2 4.9 146 25-179 389-566 (614)
371 TIGR01187 potA spermidine/putr 99.5 1.6E-14 3.5E-19 122.6 3.1 118 59-180 1-162 (325)
372 KOG0062|consensus 99.4 3.2E-14 7E-19 124.1 2.7 49 25-76 80-128 (582)
373 COG4674 Uncharacterized ABC-ty 99.4 1.8E-14 4E-19 112.3 -1.1 62 25-89 5-66 (249)
374 KOG2355|consensus 99.4 4.6E-13 1E-17 105.4 6.5 175 20-196 8-228 (291)
375 KOG0927|consensus 99.4 6.4E-14 1.4E-18 122.9 1.5 56 23-81 73-128 (614)
376 KOG0061|consensus 99.4 4.1E-13 9E-18 122.5 6.0 65 25-90 25-94 (613)
377 cd03271 ABC_UvrA_II The excisi 99.3 4.8E-13 1E-17 110.2 3.3 34 41-75 9-42 (261)
378 COG0035 Upp Uracil phosphoribo 99.3 2.5E-12 5.4E-17 101.2 7.0 73 125-198 53-125 (210)
379 cd03279 ABC_sbcCD SbcCD and ot 99.3 3.3E-13 7.2E-18 107.9 1.7 47 25-78 5-52 (213)
380 KOG0066|consensus 99.3 1E-12 2.2E-17 113.4 4.6 148 25-181 586-763 (807)
381 cd03272 ABC_SMC3_euk Eukaryoti 99.3 6.8E-13 1.5E-17 107.8 3.2 32 41-78 16-47 (243)
382 COG1245 Predicted ATPase, RNas 99.3 9.7E-13 2.1E-17 113.7 4.1 148 25-180 342-517 (591)
383 COG2401 ABC-type ATPase fused 99.3 5.2E-13 1.1E-17 114.4 2.2 150 40-195 396-591 (593)
384 cd03274 ABC_SMC4_euk Eukaryoti 99.3 2.7E-13 5.9E-18 108.5 -0.7 46 25-79 5-50 (212)
385 COG4138 BtuD ABC-type cobalami 99.3 2.1E-11 4.5E-16 94.0 7.7 48 26-80 4-51 (248)
386 cd03273 ABC_SMC2_euk Eukaryoti 99.2 3.9E-12 8.5E-17 104.1 1.3 28 54-81 25-52 (251)
387 COG0572 Udk Uridine kinase [Nu 99.2 1.6E-10 3.4E-15 92.1 9.1 118 52-170 6-132 (218)
388 KOG0059|consensus 99.1 3.9E-11 8.5E-16 113.8 5.1 61 24-86 563-623 (885)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.1 6.2E-11 1.3E-15 93.9 5.1 35 44-80 13-47 (198)
390 cd03275 ABC_SMC1_euk Eukaryoti 99.1 4E-11 8.8E-16 98.0 4.2 26 55-80 23-48 (247)
391 cd03240 ABC_Rad50 The catalyti 99.0 2.8E-11 6E-16 96.3 -2.2 28 47-75 16-43 (204)
392 cd00820 PEPCK_HprK Phosphoenol 99.0 2.8E-10 6E-15 81.3 3.1 34 41-75 3-36 (107)
393 PF14681 UPRTase: Uracil phosp 99.0 3.6E-10 7.8E-15 90.2 4.0 74 125-198 49-122 (207)
394 KOG0062|consensus 99.0 1.3E-10 2.7E-15 101.9 1.3 148 24-180 361-540 (582)
395 COG1245 Predicted ATPase, RNas 99.0 1E-10 2.2E-15 101.4 0.5 150 30-183 79-277 (591)
396 TIGR00235 udk uridine kinase. 99.0 1.6E-09 3.4E-14 86.3 6.9 81 51-132 3-89 (207)
397 TIGR00630 uvra excinuclease AB 98.9 4.4E-10 9.4E-15 106.5 3.0 42 26-75 613-654 (924)
398 COG4170 SapD ABC-type antimicr 98.9 4.1E-09 8.8E-14 83.7 7.0 57 25-82 3-61 (330)
399 cd02023 UMPK Uridine monophosp 98.9 5.4E-09 1.2E-13 82.4 7.9 76 56-132 1-82 (198)
400 TIGR03238 dnd_assoc_3 dnd syst 98.9 6.7E-10 1.5E-14 97.6 2.5 47 41-90 20-66 (504)
401 PRK00635 excinuclease ABC subu 98.9 7.1E-10 1.5E-14 110.0 2.8 31 41-72 609-639 (1809)
402 PRK05480 uridine/cytidine kina 98.9 1.3E-08 2.8E-13 81.0 8.4 80 52-132 4-89 (209)
403 PRK00349 uvrA excinuclease ABC 98.8 2.1E-09 4.4E-14 102.1 3.7 42 26-75 615-656 (943)
404 TIGR00554 panK_bact pantothena 98.8 1.9E-08 4E-13 84.1 8.6 81 51-132 59-149 (290)
405 cd02025 PanK Pantothenate kina 98.8 1.8E-08 3.9E-13 81.1 8.2 76 56-132 1-86 (220)
406 PTZ00301 uridine kinase; Provi 98.8 2.1E-08 4.5E-13 80.2 8.1 78 54-132 3-90 (210)
407 PLN02541 uracil phosphoribosyl 98.8 1.5E-08 3.2E-13 82.5 7.1 73 124-197 83-156 (244)
408 cd03280 ABC_MutS2 MutS2 homolo 98.8 3.5E-10 7.6E-15 89.6 -3.2 31 44-75 18-49 (200)
409 KOG1017|consensus 98.8 1.8E-08 3.8E-13 78.5 5.9 75 124-199 117-191 (267)
410 KOG0066|consensus 98.7 5.3E-09 1.2E-13 90.7 3.1 50 25-77 264-313 (807)
411 cd02028 UMPK_like Uridine mono 98.7 2.5E-08 5.4E-13 77.8 6.5 76 56-132 1-81 (179)
412 cd03227 ABC_Class2 ABC-type Cl 98.7 3.5E-09 7.6E-14 81.2 1.1 31 48-78 15-45 (162)
413 KOG4203|consensus 98.7 1.5E-08 3.3E-13 89.8 5.1 191 1-197 176-387 (473)
414 PLN02796 D-glycerate 3-kinase 98.7 2.8E-08 6E-13 84.5 6.2 90 41-132 80-195 (347)
415 cd03239 ABC_SMC_head The struc 98.7 3.8E-09 8.1E-14 82.4 0.7 25 55-79 23-47 (178)
416 KOG0065|consensus 98.7 1.3E-08 2.9E-13 97.6 3.6 40 38-78 802-841 (1391)
417 COG3845 ABC-type uncharacteriz 98.7 1.5E-08 3.3E-13 88.6 3.6 63 25-90 257-319 (501)
418 TIGR00767 rho transcription te 98.6 2E-08 4.4E-13 86.9 3.9 56 23-80 128-194 (415)
419 cd01128 rho_factor Transcripti 98.6 3.2E-08 6.9E-13 81.1 4.2 33 48-80 10-42 (249)
420 PLN02318 phosphoribulokinase/u 98.6 1.8E-07 3.9E-12 84.4 9.0 108 52-165 63-177 (656)
421 cd03277 ABC_SMC5_euk Eukaryoti 98.6 3.6E-08 7.8E-13 79.0 3.7 33 47-80 17-49 (213)
422 COG1129 MglA ABC-type sugar tr 98.6 5E-08 1.1E-12 86.4 4.3 47 42-90 274-320 (500)
423 PRK05439 pantothenate kinase; 98.6 3.2E-07 7E-12 77.4 8.5 82 50-132 82-173 (311)
424 PLN02348 phosphoribulokinase 98.6 2.6E-07 5.7E-12 79.8 8.1 83 49-132 44-147 (395)
425 PRK09270 nucleoside triphospha 98.5 3E-07 6.4E-12 74.3 7.4 44 51-94 30-76 (229)
426 cd02026 PRK Phosphoribulokinas 98.5 3.9E-07 8.4E-12 75.7 8.1 76 56-132 1-80 (273)
427 PF00485 PRK: Phosphoribulokin 98.5 1.9E-07 4.2E-12 73.5 5.9 111 56-170 1-131 (194)
428 PLN03046 D-glycerate 3-kinase; 98.5 4.4E-07 9.5E-12 79.0 8.0 42 53-94 211-254 (460)
429 cd03283 ABC_MutS-like MutS-lik 98.5 1.1E-07 2.4E-12 75.4 4.0 35 41-78 15-49 (199)
430 KOG0063|consensus 98.5 3E-08 6.6E-13 85.7 0.4 56 31-88 341-401 (592)
431 PRK07429 phosphoribulokinase; 98.5 1.1E-06 2.4E-11 74.8 9.8 80 52-132 6-89 (327)
432 COG0178 UvrA Excinuclease ATPa 98.4 1.5E-07 3.2E-12 86.8 4.1 33 41-74 615-647 (935)
433 PRK15494 era GTPase Era; Provi 98.4 2.6E-07 5.6E-12 79.1 4.5 59 17-77 10-75 (339)
434 cd01130 VirB11-like_ATPase Typ 98.4 1.6E-07 3.6E-12 73.5 2.9 35 47-81 18-52 (186)
435 cd02029 PRK_like Phosphoribulo 98.4 9.9E-07 2.1E-11 72.7 6.7 76 56-133 1-92 (277)
436 PRK15453 phosphoribulokinase; 98.4 1.3E-06 2.9E-11 72.4 7.4 80 52-132 3-97 (290)
437 PRK09825 idnK D-gluconate kina 98.3 4.2E-07 9.2E-12 70.7 3.9 29 53-81 2-30 (176)
438 PRK00300 gmk guanylate kinase; 98.3 4.5E-07 9.7E-12 71.7 3.9 29 51-79 2-30 (205)
439 PRK10078 ribose 1,5-bisphospho 98.3 3.7E-07 7.9E-12 71.4 3.3 27 54-80 2-28 (186)
440 TIGR01091 upp uracil phosphori 98.3 1.4E-06 3E-11 69.6 6.7 74 124-198 50-123 (207)
441 cd02024 NRK1 Nicotinamide ribo 98.3 1.7E-06 3.6E-11 68.0 6.9 65 56-123 1-71 (187)
442 PRK13477 bifunctional pantoate 98.3 9.7E-07 2.1E-11 79.1 5.9 55 41-100 273-327 (512)
443 PRK06002 fliI flagellum-specif 98.3 8.2E-07 1.8E-11 78.1 4.7 56 24-82 138-193 (450)
444 PRK06696 uridine kinase; Valid 98.3 9.5E-07 2.1E-11 71.1 4.3 46 50-95 18-65 (223)
445 cd03282 ABC_MSH4_euk MutS4 hom 98.3 7.4E-07 1.6E-11 71.0 3.5 37 41-78 17-53 (204)
446 cd03243 ABC_MutS_homologs The 98.2 7.1E-07 1.5E-11 70.7 3.1 30 48-77 23-52 (202)
447 PF13555 AAA_29: P-loop contai 98.2 1.4E-06 3E-11 56.1 3.8 34 47-80 15-49 (62)
448 PRK00129 upp uracil phosphorib 98.2 3.1E-06 6.7E-11 67.7 6.4 74 124-198 52-125 (209)
449 TIGR02322 phosphon_PhnN phosph 98.2 1.3E-06 2.8E-11 67.6 3.8 27 54-80 1-27 (179)
450 KOG0065|consensus 98.2 3.7E-06 8.1E-11 81.3 7.6 39 40-79 128-166 (1391)
451 PF13207 AAA_17: AAA domain; P 98.2 1.3E-06 2.9E-11 63.0 3.5 32 56-90 1-32 (121)
452 PRK14721 flhF flagellar biosyn 98.2 2.4E-06 5.3E-11 74.8 5.2 43 51-93 188-234 (420)
453 PRK06995 flhF flagellar biosyn 98.2 2.7E-06 5.8E-11 75.7 5.5 49 42-91 245-297 (484)
454 TIGR03263 guanyl_kin guanylate 98.1 1.6E-06 3.4E-11 67.1 3.0 26 54-79 1-26 (180)
455 PRK08233 hypothetical protein; 98.1 3.3E-06 7.1E-11 65.2 4.6 38 53-92 2-39 (182)
456 PRK07196 fliI flagellum-specif 98.1 1.5E-06 3.3E-11 76.3 2.9 40 40-81 143-182 (434)
457 PRK07667 uridine kinase; Provi 98.1 1.6E-05 3.4E-10 62.6 7.8 43 52-94 15-59 (193)
458 PRK03846 adenylylsulfate kinas 98.1 3.6E-06 7.8E-11 66.5 4.1 38 51-88 21-58 (198)
459 PRK06547 hypothetical protein; 98.1 4.8E-06 1E-10 64.6 4.6 40 51-93 12-51 (172)
460 COG4240 Predicted kinase [Gene 98.1 1.6E-05 3.5E-10 63.9 7.4 83 50-132 46-141 (300)
461 PRK07261 topology modulation p 98.0 4.9E-06 1.1E-10 64.4 4.1 26 56-81 2-27 (171)
462 PRK05541 adenylylsulfate kinas 98.0 4.2E-06 9E-11 64.7 3.7 31 51-81 4-34 (176)
463 PRK14722 flhF flagellar biosyn 98.0 8.4E-06 1.8E-10 70.5 5.5 50 41-91 125-178 (374)
464 TIGR02788 VirB11 P-type DNA tr 98.0 3.7E-06 8E-11 71.0 2.9 36 46-81 136-171 (308)
465 cd03284 ABC_MutS1 MutS1 homolo 98.0 5.2E-06 1.1E-10 66.6 3.6 35 41-77 19-53 (216)
466 cd03287 ABC_MSH3_euk MutS3 hom 98.0 5E-06 1.1E-10 67.1 3.3 35 41-76 19-53 (222)
467 PF13671 AAA_33: AAA domain; P 98.0 1.8E-05 3.8E-10 58.6 6.0 35 56-93 1-35 (143)
468 PRK08149 ATP synthase SpaL; Va 98.0 4.4E-06 9.5E-11 73.3 2.9 41 40-82 139-179 (428)
469 TIGR01069 mutS2 MutS2 family p 98.0 1.5E-06 3.2E-11 81.7 -0.1 30 48-77 315-345 (771)
470 PRK06731 flhF flagellar biosyn 98.0 5.6E-06 1.2E-10 68.6 3.3 67 25-92 40-115 (270)
471 PRK14723 flhF flagellar biosyn 98.0 1.1E-05 2.5E-10 75.1 5.6 51 41-92 173-227 (767)
472 PRK00889 adenylylsulfate kinas 97.9 8.9E-06 1.9E-10 62.8 4.0 29 52-80 2-30 (175)
473 cd00071 GMPK Guanosine monopho 97.9 7.4E-06 1.6E-10 61.1 3.3 25 56-80 1-25 (137)
474 PRK08118 topology modulation p 97.9 8.8E-06 1.9E-10 62.7 3.8 26 56-81 3-28 (167)
475 PRK07594 type III secretion sy 97.9 7.1E-06 1.5E-10 72.1 3.6 55 25-82 129-183 (433)
476 KOG3308|consensus 97.9 1.2E-05 2.7E-10 63.2 4.5 48 54-103 4-51 (225)
477 cd03285 ABC_MSH2_euk MutS2 hom 97.9 7.4E-06 1.6E-10 66.0 3.3 34 41-75 18-51 (222)
478 cd01136 ATPase_flagellum-secre 97.9 8.8E-06 1.9E-10 69.1 3.9 50 30-82 48-97 (326)
479 PRK06217 hypothetical protein; 97.9 2.2E-05 4.8E-10 61.1 5.8 36 55-93 2-37 (183)
480 TIGR00150 HI0065_YjeE ATPase, 97.9 1.3E-05 2.9E-10 59.5 4.3 32 50-81 18-49 (133)
481 cd02019 NK Nucleoside/nucleoti 97.9 9.6E-06 2.1E-10 53.2 3.0 23 56-78 1-23 (69)
482 PRK09862 putative ATP-dependen 97.9 1.1E-05 2.3E-10 72.4 3.9 51 28-81 187-237 (506)
483 TIGR00750 lao LAO/AO transport 97.9 1.4E-05 3.1E-10 67.2 4.3 48 41-89 22-71 (300)
484 PRK00635 excinuclease ABC subu 97.9 1E-05 2.3E-10 81.1 4.1 47 26-75 936-982 (1809)
485 PRK07721 fliI flagellum-specif 97.9 1.2E-05 2.6E-10 70.9 4.0 41 40-82 146-186 (438)
486 smart00382 AAA ATPases associa 97.9 1.4E-05 3E-10 57.5 3.7 29 53-81 1-29 (148)
487 PRK10416 signal recognition pa 97.9 2E-05 4.4E-10 66.9 5.0 41 51-91 111-153 (318)
488 PRK10751 molybdopterin-guanine 97.9 1.7E-05 3.6E-10 61.6 4.1 36 53-88 5-42 (173)
489 TIGR01360 aden_kin_iso1 adenyl 97.9 1.6E-05 3.4E-10 61.6 3.9 28 53-80 2-29 (188)
490 TIGR00455 apsK adenylylsulfate 97.8 1.6E-05 3.5E-10 61.9 3.9 33 48-80 12-44 (184)
491 TIGR03499 FlhF flagellar biosy 97.8 2.6E-05 5.7E-10 65.1 5.3 42 51-92 191-236 (282)
492 TIGR02546 III_secr_ATP type II 97.8 2E-05 4.4E-10 69.3 4.5 41 40-82 133-173 (422)
493 TIGR01026 fliI_yscN ATPase Fli 97.8 2.2E-05 4.7E-10 69.4 4.4 40 40-81 151-190 (440)
494 PRK08972 fliI flagellum-specif 97.8 1.1E-05 2.5E-10 70.8 2.6 40 40-81 150-189 (444)
495 TIGR01526 nadR_NMN_Atrans nico 97.8 1.4E-05 3.1E-10 68.0 3.1 36 47-82 153-190 (325)
496 PRK14738 gmk guanylate kinase; 97.8 2.1E-05 4.6E-10 62.6 3.9 27 51-77 10-36 (206)
497 cd01131 PilT Pilus retraction 97.8 2.1E-05 4.5E-10 62.2 3.8 26 56-81 3-28 (198)
498 PF03193 DUF258: Protein of un 97.8 1.7E-05 3.6E-10 60.8 3.1 25 54-78 35-59 (161)
499 PRK05688 fliI flagellum-specif 97.8 1.5E-05 3.3E-10 70.3 3.0 40 40-81 156-195 (451)
500 COG0563 Adk Adenylate kinase a 97.8 2.6E-05 5.7E-10 60.8 4.0 27 56-82 2-28 (178)
No 1
>KOG0058|consensus
Probab=99.96 E-value=6.6e-30 Score=228.68 Aligned_cols=171 Identities=17% Similarity=0.241 Sum_probs=127.1
Q ss_pred eecCchhHHhhhhhcccccccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 4 FVDTDADVRLARRLKRDILARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
++|-.+.....+....+..++.|+++||+|.||.+ ..++|+| +||++++|+++|+||||||||||++.+|..++.|..
T Consensus 444 l~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~-lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts 522 (716)
T KOG0058|consen 444 LMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKN-LSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS 522 (716)
T ss_pred HhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchhhcC-ceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 34444444444433344567789999999999876 4579999 999999999999999999999999999999888765
Q ss_pred eeeecccchhccccc---------c------ccCCC-------CCCCchHHHHHHHHHHHHhcCceeecCCceee----e
Q psy9640 83 VTLLSMDSFYRVHAD---------I------IVPRG-------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----E 136 (199)
Q Consensus 83 ~~~i~~d~~~~~~~~---------~------~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~ 136 (199)
+. +-.|+......+ . .+... .....+.+++..+.+....+.++..+|++|+| .
T Consensus 523 G~-IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEk 601 (716)
T KOG0058|consen 523 GR-ILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEK 601 (716)
T ss_pred Ce-EEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCc
Confidence 43 444443211111 0 01110 01145668888888777888889999999999 7
Q ss_pred cceecCCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeC
Q psy9640 137 GKRCAVSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTN 178 (199)
Q Consensus 137 g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~ 178 (199)
|.+||||||||||||||++. ..+.+.+++.+.+| |+|.|-
T Consensus 602 G~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTV--lvIAHR 662 (716)
T KOG0058|consen 602 GSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTV--LVIAHR 662 (716)
T ss_pred cccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeE--EEEehh
Confidence 88999999999999999976 66667788888555 888873
No 2
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.6e-29 Score=202.87 Aligned_cols=150 Identities=18% Similarity=0.142 Sum_probs=104.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch---------hccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF---------YRVH 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~---------~~~~ 95 (199)
.+++++|++.|.+. .+|+| +||++.+||+++|+||||||||||+|+|+|+..+..+.+...+.. +..+
T Consensus 3 ~l~i~~v~~~f~~~--~vl~~-i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGGV--EVLED-INLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCce--EEecc-ceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 47889999999875 89999 999999999999999999999999999999987765443222110 0001
Q ss_pred cccccC--CCCCCC--------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------
Q psy9640 96 ADIIVP--RGGENC--------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------- 156 (199)
Q Consensus 96 ~~~~~~--~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------- 156 (199)
....++ ....|- ...++-.+.+.+.+. .+.+...-+..|++||||||||||||||++.
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~---~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE---LVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHH---HcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC
Confidence 100010 011110 011111112212222 3455444455788999999999999999975
Q ss_pred ------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|.+.+.++..+-+.|+|+||||-+
T Consensus 157 PFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 157 PFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 899999999999999999999744
No 3
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=2.3e-29 Score=212.87 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=107.5
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh-------cccc
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY-------RVHA 96 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~-------~~~~ 96 (199)
..++++||+++|.+. .+++| +|++|++||++++.|||||||||++|+|+|+..|..+ .|..++.. +...
T Consensus 4 ~~l~i~~v~k~yg~~--~av~~-isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G-~I~l~G~~i~~lpp~kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFGDF--TAVDD-ISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG-EILLDGEDITDVPPEKRPI 79 (352)
T ss_pred ceEEEEeeeeecCCe--eEEec-ceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhhccc
Confidence 468999999999854 89999 9999999999999999999999999999998877654 33333221 1111
Q ss_pred ccccCCC--C------CC---------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---
Q psy9640 97 DIIVPRG--G------EN---------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--- 156 (199)
Q Consensus 97 ~~~~~~~--~------~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--- 156 (199)
++.+... + .| ....+++.+.+.+.+. .+.+....+..+.+|||||+||||||||+..
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~---lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~ 156 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALE---LVGLEGFADRKPHQLSGGQQQRVALARALVPEPK 156 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHH---HcCchhhhhhChhhhChHHHHHHHHHHHhhcCcc
Confidence 1111110 0 11 0111223233323332 3455554455788999999999999999975
Q ss_pred ------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|..++++++...++++|+|||||+
T Consensus 157 vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 157 VLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred hhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 899999999999999999999987
No 4
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.95 E-value=1.4e-29 Score=231.62 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=122.9
Q ss_pred hcccccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcccc
Q psy9640 17 LKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHA 96 (199)
Q Consensus 17 ~~~~~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~ 96 (199)
.......+.++++||+|+|.....++|+| +|++|++|+++||+|+||||||||+|+|.|++.|..+ .+..|++.....
T Consensus 463 ~~~~~~~g~I~~~nvsf~y~~~~~~vL~~-isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G-~I~~dg~dl~~i 540 (709)
T COG2274 463 IHLPKLQGEIEFENVSFRYGPDDPPVLED-LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG-RILLDGVDLNDI 540 (709)
T ss_pred ccccccCceEEEEEEEEEeCCCCcchhhc-eeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEeHHhc
Confidence 34455567899999999998876689999 9999999999999999999999999999999887543 333443322211
Q ss_pred ccc---------------cCCC------CCC-CchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeE
Q psy9640 97 DII---------------VPRG------GEN-CVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSI 150 (199)
Q Consensus 97 ~~~---------------~~~~------~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~Qrvai 150 (199)
+.. +... ..+ ..+.+++++++.....+.++..+|.+|++ .|..||||||||++|
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal 620 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620 (709)
T ss_pred CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 111 0000 011 23458888888777777888999999998 688999999999999
Q ss_pred Eeccch-----------------hHHHHHhhccccc--eeEEEEEeCCCCC
Q psy9640 151 LRAGET-----------------MEQAVHDVCKDIR--IGKILIQTNKATD 182 (199)
Q Consensus 151 aRA~~~-----------------~~~~l~~~~p~~~--~~~~~~~~~~~~~ 182 (199)
|||++. .+..+.+.+.... -|+|.|+|...+.
T Consensus 621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti 671 (709)
T COG2274 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI 671 (709)
T ss_pred HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHh
Confidence 999976 4444555555444 7789999977653
No 5
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.94 E-value=4.2e-29 Score=210.27 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=109.1
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc-------c
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH-------A 96 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~-------~ 96 (199)
..|+++||++.|++. .++++ +|+++++|++++|+||||||||||||+|+|+..+..+.+ ..++..... .
T Consensus 2 ~~i~l~~v~K~yg~~--~~l~~-i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I-~i~g~~vt~l~P~~R~i 77 (338)
T COG3839 2 AELELKNVRKSFGSF--EVLKD-VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI-LIDGRDVTDLPPEKRGI 77 (338)
T ss_pred cEEEEeeeEEEcCCc--eeeec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChhHCCE
Confidence 458999999999875 28999 999999999999999999999999999999888765443 333221111 0
Q ss_pred ccccCCCC--C------C--------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640 97 DIIVPRGG--E------N--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---- 156 (199)
Q Consensus 97 ~~~~~~~~--~------~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---- 156 (199)
.+.+.... . | ....+++.+.+.+.. ..+.+.+.++..|.+|||||+||||||||+..
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva---~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v 154 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA---KLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKV 154 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHH---HHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCE
Confidence 11111100 0 0 011123333332222 34566677777899999999999999999976
Q ss_pred -----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|...+.+++...++|+|.|||||.
T Consensus 155 ~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~ 195 (338)
T COG3839 155 FLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV 195 (338)
T ss_pred EEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH
Confidence 888999999999999999999986
No 6
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=4.3e-28 Score=193.84 Aligned_cols=151 Identities=13% Similarity=0.084 Sum_probs=100.5
Q ss_pred cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch------------
Q psy9640 26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF------------ 91 (199)
Q Consensus 26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~------------ 91 (199)
++++||++.|... ...+|++ ++|+|++|++++|+||||||||||+++|.++..|. .|.+..++.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~-v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt-~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKD-VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-SGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred cEEeeeEEEeccCCcceEeccc-ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CceEEECCEEcCcCCHHHHHH
Confidence 5689999999542 2479999 99999999999999999999999999998888774 444333321
Q ss_pred -hccccccccCCCC--CCCchHHHH--------------HHHHHHHHhcCceeecCCcee-eecceecCCeeeeeeEEec
Q psy9640 92 -YRVHADIIVPRGG--ENCVAIDLI--------------VQHIHSQLQAGVSVDMPQGYT-YEGKRCAVSKICGVSILRA 153 (199)
Q Consensus 92 -~~~~~~~~~~~~~--~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~-~~g~~lSgGq~QrvaiaRA 153 (199)
++...++.+.... .+-...+-+ .+.+ ..+ ...+.+..... ..+.+|||||+||||||||
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~-~~l--~~~lgl~~~~~~~~p~eLSGGqqQRVAIARA 156 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAA-EEL--LEVLGLEDRLLKKKPSELSGGQQQRVAIARA 156 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHH-HHH--HHhcCChhhhccCCchhcCHHHHHHHHHHHH
Confidence 1111122221111 111111111 1111 111 11234443333 4688999999999999999
Q ss_pred cch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.. ..+.+.+...+.+.++|.||||+..
T Consensus 157 L~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~l 205 (226)
T COG1136 157 LINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPEL 205 (226)
T ss_pred HhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 975 7777888888888999999999874
No 7
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=5.5e-28 Score=189.93 Aligned_cols=147 Identities=16% Similarity=0.097 Sum_probs=98.5
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------cc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------VH 95 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~~ 95 (199)
|+++||+++|... .+|++ |++++++|++++|+||||||||||+|||.++..+. .|.+..|+... ..
T Consensus 3 i~i~~l~K~fg~~--~VLkg-i~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~-~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 3 IEIKNLSKSFGDK--EVLKG-ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-SGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred EEEEeeeEEeCCe--EEecC-cceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC-CceEEECCEeccchhhHHHHHHh
Confidence 7899999999876 89999 99999999999999999999999999997665544 44444444211 01
Q ss_pred cccccCC--CCCCC---------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640 96 ADIIVPR--GGENC---------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 96 ~~~~~~~--~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
.++.+.. ...+- ...++..+...+.+ ..+.+....+..|.+|||||+||||||||+.-
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL---~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELL---EKVGLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHH---HHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 1111111 11110 11122222221222 34666666667889999999999999999964
Q ss_pred ---------------hHHHHHhhcc---ccceeEEEEEeCC
Q psy9640 157 ---------------MEQAVHDVCK---DIRIGKILIQTNK 179 (199)
Q Consensus 157 ---------------~~~~l~~~~p---~~~~~~~~~~~~~ 179 (199)
+..++++.+. +-+.|-|.|||+=
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM 196 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM 196 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh
Confidence 5555555544 4478889999853
No 8
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.9e-28 Score=191.45 Aligned_cols=152 Identities=17% Similarity=0.160 Sum_probs=105.2
Q ss_pred Ccccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch-----------
Q psy9640 25 GRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF----------- 91 (199)
Q Consensus 25 ~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~----------- 91 (199)
-++++|+++.|+.. ..+++++ |||++.+|+.+||+|+||||||||+++|+|+..+..+.+ ..++.
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~-VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I-~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNN-VSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI-LLDGKPLAPKKRAKAF 80 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcc-eeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE-EECCcccCccccchhh
Confidence 47899999999765 1259999 999999999999999999999999999999988755443 33331
Q ss_pred hcccccc-ccCCCCCCCch-H-HHHHH------------HHHHHHhcCceeecCCc-eeeecceecCCeeeeeeEEeccc
Q psy9640 92 YRVHADI-IVPRGGENCVA-I-DLIVQ------------HIHSQLQAGVSVDMPQG-YTYEGKRCAVSKICGVSILRAGE 155 (199)
Q Consensus 92 ~~~~~~~-~~~~~~~~~~~-~-~~~~~------------~l~~~~~~~~~~~~~~~-~~~~g~~lSgGq~QrvaiaRA~~ 155 (199)
++....+ +.+....||.- . +.+.+ .+.+.+ ..+.+|.. ++..|.+|||||+||||||||+.
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L---~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELL---DQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHH---HHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 1111101 11111122210 1 11111 111222 24566654 45578999999999999999997
Q ss_pred h---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 156 T---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
. +...|.++..+.+.|.|+|+||-..
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~ 204 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL 204 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH
Confidence 5 7778888899999999999998653
No 9
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=1.5e-27 Score=191.49 Aligned_cols=147 Identities=19% Similarity=0.184 Sum_probs=105.4
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc-c--------
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH-A-------- 96 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~-~-------- 96 (199)
|+++|||++|.+. .++++ +||+|++|++++++|||||||||++|+|-+++.|..+.+. .++..... .
T Consensus 2 I~~~nvsk~y~~~--~av~~-v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~-i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 2 IEFENVSKRYGNK--KAVDD-VNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL-IDGEDISDLDPVELRRKI 77 (309)
T ss_pred ceeeeeehhcCCc--eeeee-eeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEE-ECCeecccCCHHHHHHhh
Confidence 6899999999865 89999 9999999999999999999999999999888877655443 22211110 0
Q ss_pred c-ccc-----C--CCCCC--------CchHHHHHHHHHHHHhcCceeecCC--ceeeecceecCCeeeeeeEEeccch--
Q psy9640 97 D-IIV-----P--RGGEN--------CVAIDLIVQHIHSQLQAGVSVDMPQ--GYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 97 ~-~~~-----~--~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
+ ..+ + .-.+| .++.+.+.+...+.+. .+.++. +.+..|++|||||+|||.+|||+.+
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~---lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLD---LVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHH---HhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 0 000 0 00111 2233444444423322 345543 3455899999999999999999986
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNK 179 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~ 179 (199)
..+.+.+++..++-|.|+||||-
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi 196 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI 196 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH
Confidence 77888899999999999999964
No 10
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.93 E-value=2.1e-27 Score=212.94 Aligned_cols=150 Identities=14% Similarity=0.107 Sum_probs=108.7
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------c
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------V 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~ 94 (199)
..++++||+|+|++. +++|+| +||++++|++++|+||||||||||+++|+|++.|..+.+ ..|+... .
T Consensus 333 ~~I~~~~vsf~Y~~~-~~vL~~-isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-~i~g~~i~~~~~~lr~~ 409 (529)
T TIGR02868 333 PTLELRDLSFGYPGS-PPVLDG-VSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV-TLDGVSVSSLQDELRRR 409 (529)
T ss_pred ceEEEEEEEEecCCC-Cceeec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEEhhhHHHHHHhh
Confidence 359999999999764 369999 999999999999999999999999999999988764432 2222110 0
Q ss_pred ccccccC-----CC-------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640 95 HADIIVP-----RG-------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 95 ~~~~~~~-----~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
..-.++. .. .....+.+++.++++..........+|.|++| .|.+||||||||++||||++.
T Consensus 410 i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~ 489 (529)
T TIGR02868 410 ISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA 489 (529)
T ss_pred eEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC
Confidence 0000100 00 01123456777777555555567788999998 578999999999999999976
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTN 178 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~ 178 (199)
+.+.+.+..++ .++|.|+|+
T Consensus 490 ~iliLDE~TSaLD~~te~~I~~~l~~~~~~--~TvIiItHr 528 (529)
T TIGR02868 490 PILLLDEPTEHLDAGTESELLEDLLAALSG--KTVVVITHH 528 (529)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCC--CEEEEEecC
Confidence 55556665555 456999996
No 11
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.6e-27 Score=202.91 Aligned_cols=153 Identities=12% Similarity=0.105 Sum_probs=114.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc-------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD------- 97 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~------- 97 (199)
.++++||+|+|++...++|+| +||++++||.++|+|+|||||||++++|.|.+.+..+.+-..+.......+
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~-~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i 414 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKN-FNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETI 414 (573)
T ss_pred eeeeccceeecCCCccchhhc-cceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHH
Confidence 589999999999988899999 999999999999999999999999999999988765443222211000000
Q ss_pred -cccCCC-------------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch---
Q psy9640 98 -IIVPRG-------------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET--- 156 (199)
Q Consensus 98 -~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~--- 156 (199)
+...+. ..-+.+.++++++++.+...+...+.|.++++ .|.+|||||+||++|||+++.
T Consensus 415 ~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dap 494 (573)
T COG4987 415 SVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAP 494 (573)
T ss_pred hhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCC
Confidence 011110 11134567888888776666777788888887 789999999999999999986
Q ss_pred ------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+..-+.+-+ .|.|||+-.
T Consensus 495 l~lLDEPTegLD~~TE~~vL~ll~~~~~~kT--ll~vTHrL~ 534 (573)
T COG4987 495 LWLLDEPTEGLDPITERQVLALLFEHAEGKT--LLMVTHRLR 534 (573)
T ss_pred eEEecCCcccCChhhHHHHHHHHHHHhcCCe--EEEEecccc
Confidence 6666666666544 499998544
No 12
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.92 E-value=1.4e-26 Score=213.98 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=112.2
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------- 94 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------- 94 (199)
...|+++||+|+|++..+++|+| +||++++|+.++|+|+||||||||+++|+|++.|..+. +..|+....
T Consensus 475 ~~~I~~~~vsf~y~~~~~~vL~~-isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~-I~idg~~i~~~~~~~lr 552 (710)
T TIGR03796 475 SGYVELRNITFGYSPLEPPLIEN-FSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE-ILFDGIPREEIPREVLA 552 (710)
T ss_pred CCeEEEEEEEEecCCCCCCcccc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEeHHHCCHHHHH
Confidence 34699999999998655689999 99999999999999999999999999999999876433 322221110
Q ss_pred -c-cccccC----------C--CCCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 95 -H-ADIIVP----------R--GGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 95 -~-~~~~~~----------~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
. .-.++. + ......+.+++.++++..........+|.++++ .|..||||||||++||||++.
T Consensus 553 ~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 553 NSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred hheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 0 000000 0 001123456777777555555566678998887 688999999999999999976
Q ss_pred -----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -----------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
.+..+.+.+.....+.|.|+|+..+
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~ 674 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLST 674 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 3334444444456788999997664
No 13
>KOG0055|consensus
Probab=99.92 E-value=2e-26 Score=216.29 Aligned_cols=159 Identities=16% Similarity=0.150 Sum_probs=118.6
Q ss_pred ccccccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc
Q psy9640 19 RDILARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD 97 (199)
Q Consensus 19 ~~~~~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~ 97 (199)
+....++|+++||+|.||.+ ..++|+| +|+++++|+.+||||||||||||++.+|-.+++|..+. +..|+......+
T Consensus 981 ~~~~~G~I~~~~V~F~YPsRP~~~Il~~-l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~-V~IDg~dik~ln 1058 (1228)
T KOG0055|consen 981 LPNVKGDIEFRNVSFAYPTRPDVPVLNN-LSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGK-VKIDGVDIKDLN 1058 (1228)
T ss_pred cccceeEEEEeeeEeeCCCCCCchhhcC-CcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe-EEECCcccccCC
Confidence 34455679999999999874 4579999 99999999999999999999999999998888876543 444433211111
Q ss_pred ----------cccCCCC----------C--CCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEE
Q psy9640 98 ----------IIVPRGG----------E--NCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSIL 151 (199)
Q Consensus 98 ----------~~~~~~~----------~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~Qrvaia 151 (199)
..++... + ...+.+++.++++....+.++..+|+||+| .|.+||||||||||||
T Consensus 1059 l~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1059 LKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIA 1138 (1228)
T ss_pred HHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHH
Confidence 1111110 1 124668899999888888999999999999 6899999999999999
Q ss_pred eccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
||++. .++.|-++++++ |+|+|.|---|
T Consensus 1139 RAilRnPkILLLDEATSALDseSErvVQeALd~a~~gR--T~IvIAHRLST 1187 (1228)
T KOG0055|consen 1139 RAILRNPKILLLDEATSALDSESERVVQEALDRAMEGR--TTIVIAHRLST 1187 (1228)
T ss_pred HHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCC--cEEEEecchhh
Confidence 99986 444444555552 36888885444
No 14
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.3e-26 Score=185.52 Aligned_cols=147 Identities=14% Similarity=0.170 Sum_probs=102.2
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe------------------eee
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW------------------VTL 85 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~------------------~~~ 85 (199)
..|+++|+++.|.+. ++|+| |||++++|++++|+||||||||||+|.|+|++.|.. +|+
T Consensus 3 ~~i~v~nl~v~y~~~--~vl~~-i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR--PVLED-ISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE--eeeec-cEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 458999999999876 59999 999999999999999999999999999999887643 444
Q ss_pred ecccchh-cccc----cc-ccC----CC---CCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEe
Q psy9640 86 LSMDSFY-RVHA----DI-IVP----RG---GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILR 152 (199)
Q Consensus 86 i~~d~~~-~~~~----~~-~~~----~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaR 152 (199)
++|.... .... ++ ... .. ..+..+.+.+.++| +........+. .-.+|||||+|||-|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL-~~Vgm~~~~~r------~i~~LSGGQ~QRV~lAR 152 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEAL-ERVGMEDLRDR------QIGELSGGQKQRVLLAR 152 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHH-HHcCchhhhCC------cccccCcHHHHHHHHHH
Confidence 4442210 0000 00 000 00 11223334555555 22221222233 33489999999999999
Q ss_pred ccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
|++. +.+.+.++-.+ +.+.+.|+||-..
T Consensus 153 AL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~ 201 (254)
T COG1121 153 ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGL 201 (254)
T ss_pred HhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHH
Confidence 9975 77778887777 9999999998774
No 15
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.92 E-value=8.6e-27 Score=214.75 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=111.4
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------- 93 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------- 93 (199)
..++++||+|+|++..+++|+| +||++++|+.++|+|+||||||||+++|+|++.|..+. +..|+...
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~-isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~-I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDD-VSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS-VFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred ceEEEEEEEEEcCCCCccceee-eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEEcCcCCHHHHHh
Confidence 4699999999997655689999 99999999999999999999999999999999875433 22222110
Q ss_pred cccccccCCC-----------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640 94 VHADIIVPRG-----------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 94 ~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
...-.++... ..++.+.+++.++++..........+|.++++ .|..||||||||++||||++.
T Consensus 528 ~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p 607 (686)
T TIGR03797 528 QLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP 607 (686)
T ss_pred ccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 0000011100 01234556777777555555566688999888 678999999999999999976
Q ss_pred ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
.+..+.+.+.....+.|.|+|+.++
T Consensus 608 ~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~ 647 (686)
T TIGR03797 608 RILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLST 647 (686)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHH
Confidence 3344444444445688999997764
No 16
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.8e-26 Score=188.55 Aligned_cols=149 Identities=20% Similarity=0.193 Sum_probs=105.8
Q ss_pred cccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----------
Q psy9640 26 RDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY---------- 92 (199)
Q Consensus 26 i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~---------- 92 (199)
|++++|++.|... ...+++| |||+|++|+++||+|.||||||||+|++-++-.|..+.++ .|+..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~-vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~-v~G~di~~l~~~~Lr 79 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDD-VSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVF-VDGQDLTALSEAELR 79 (339)
T ss_pred eEEEeeeeeeccCCCCceeeecc-ceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE-EcCEecccCChHHHH
Confidence 6899999999762 2479999 9999999999999999999999999998766666554433 33210
Q ss_pred --ccccccccCC-------CC-CC--------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640 93 --RVHADIIVPR-------GG-EN--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG 154 (199)
Q Consensus 93 --~~~~~~~~~~-------~~-~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~ 154 (199)
+...++.+.. .. .| ..+-+++.+.+.+.+ ..+.++...+..|.+|||||||||+||||+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elL---elVgL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELL---ELVGLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHH---HHcCChhhhccCchhcCcchhhHHHHHHHH
Confidence 1111121111 00 11 112233433342333 346777666678999999999999999999
Q ss_pred ch---------------------hHHHHHhhccccceeEEEEEeCC
Q psy9640 155 ET---------------------MEQAVHDVCKDIRIGKILIQTNK 179 (199)
Q Consensus 155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~ 179 (199)
.. +.+.|.++....++|.|+|+|.-
T Consensus 157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm 202 (339)
T COG1135 157 ANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM 202 (339)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH
Confidence 75 88889999999999999999853
No 17
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.92 E-value=1.9e-26 Score=209.14 Aligned_cols=152 Identities=13% Similarity=0.094 Sum_probs=110.7
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc--------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH-------- 95 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~-------- 95 (199)
..++++||+|.|++. +++|+| +||++++|++++|+|+||||||||+++|+|++ |.. |.+..|+.....
T Consensus 348 ~~i~~~~vsf~~~~~-~~vL~~-i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~-G~I~i~g~~i~~~~~~~lr~ 423 (588)
T PRK11174 348 VTIEAEDLEILSPDG-KTLAGP-LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ-GSLKINGIELRELDPESWRK 423 (588)
T ss_pred ceEEEEeeEEeccCC-Ceeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC-cEEEECCEecccCCHHHHHh
Confidence 359999999876543 479999 99999999999999999999999999999999 653 444444321100
Q ss_pred --cccccC-----CC-------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640 96 --ADIIVP-----RG-------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 96 --~~~~~~-----~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~- 156 (199)
.-.++. .. .....+.+++.++++..........+|.|++| .|.+||||||||++||||++.
T Consensus 424 ~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~ 503 (588)
T PRK11174 424 HLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP 503 (588)
T ss_pred heEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence 000110 00 01124557788888665656667789999888 678999999999999999976
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+..++ -++|.|+|+..+
T Consensus 504 ~~IliLDE~TSaLD~~te~~i~~~l~~~~~~--~TvIiItHrl~~ 546 (588)
T PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQALNAASRR--QTTLMVTHQLED 546 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCC--CEEEEEecChHH
Confidence 55666666655 456999997654
No 18
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.7e-26 Score=187.64 Aligned_cols=149 Identities=11% Similarity=0.085 Sum_probs=103.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--c-------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--H------- 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--~------- 95 (199)
.|.++|+++.|+.. .+++| |++.|+.|+.+++.||||||||||+|+|+|+..|..+.++..+..... .
T Consensus 2 ~i~i~~~~~~~~~~--~a~~d-i~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDD-ISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhcccc--ccccc-ceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 47889999999887 78999 999999999999999999999999999999998876544433221000 0
Q ss_pred -----------cccc------cC--CCCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640 96 -----------ADII------VP--RGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 96 -----------~~~~------~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~ 156 (199)
..+. +. .....+ ....+...+.+.+. .+++..--+..|.+|||||+||||+|||+..
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p-~~~~~r~rv~elL~---lvqL~~la~ryP~QLSGGQrQRVALARALA~ 154 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERP-SEAEIRARVEELLR---LVQLEGLADRYPAQLSGGQRQRVALARALAV 154 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCC-ChhhHHHHHHHHHH---HhcccchhhcCchhcChHHHHHHHHHHHhhc
Confidence 0000 00 000001 11122222212221 2333332244688999999999999999975
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+...|.+++...++++|+|+||++
T Consensus 155 eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e 199 (345)
T COG1118 155 EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE 199 (345)
T ss_pred CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH
Confidence 888889999999999999999987
No 19
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.92 E-value=5.2e-26 Score=175.53 Aligned_cols=151 Identities=16% Similarity=0.129 Sum_probs=96.5
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc-----------hhcc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS-----------FYRV 94 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~-----------~~~~ 94 (199)
|+++||++.|++. +++|+| +||+|++||++-++||||||||||+|+|.+...|..+.++..+- +.+.
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~-vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG-REALRD-VSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC-chhhhC-ceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 6899999999877 679999 99999999999999999999999999999988776443322210 0111
Q ss_pred ccccccC-------CCC-CC--------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640 95 HADIIVP-------RGG-EN--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 95 ~~~~~~~-------~~~-~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
..+..+. +.. +| ......+.+.+.+.+. .+.+......-|.+|||||+|||+||||...
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~---~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P 156 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLD---LVGLKHKARALPSQLSGGEQQRVAIARAIVNQP 156 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHH---HhccchhhhcCccccCchHHHHHHHHHHHccCC
Confidence 1111110 000 11 0111222222212221 2333333333466899999999999999975
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
++..+.+ +..++.++|.+|||.+.+
T Consensus 157 ~vLlADEPTGNLDp~~s~~im~lfee-inr~GtTVl~ATHd~~lv 200 (223)
T COG2884 157 AVLLADEPTGNLDPDLSWEIMRLFEE-INRLGTTVLMATHDLELV 200 (223)
T ss_pred CeEeecCCCCCCChHHHHHHHHHHHH-HhhcCcEEEEEeccHHHH
Confidence 2222222 335689999999998754
No 20
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=5.4e-26 Score=185.02 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=99.5
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee---------------------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV--------------------- 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~--------------------- 83 (199)
.++++|+++.|++. +++++ +||++++|++++|+||||||||||+|+|+|.+.|..+
T Consensus 2 ~L~~~~ls~~y~~~--~il~~-ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGGK--PILDD-LSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECCe--eEEec-ceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 37899999999865 89999 9999999999999999999999999999999876432
Q ss_pred eeecccchh----ccccccccCCCC-------CCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEe
Q psy9640 84 TLLSMDSFY----RVHADIIVPRGG-------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILR 152 (199)
Q Consensus 84 ~~i~~d~~~----~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaR 152 (199)
+++++.... .........|.. ....+.+.+.+++ +........+. .-.+|||||||||.|||
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL-~~~~~~~la~r------~~~~LSGGerQrv~iAr 151 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEAL-ELLGLEHLADR------PVDELSGGERQRVLIAR 151 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHH-HHhCcHHHhcC------cccccChhHHHHHHHHH
Confidence 222222100 000000111110 0112223444455 33222222222 23479999999999999
Q ss_pred ccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|+.. ..+.++++..+-+.+.|.+.||.+
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN 200 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN 200 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 9976 778888888787899999999865
No 21
>KOG0055|consensus
Probab=99.92 E-value=4.1e-26 Score=214.25 Aligned_cols=158 Identities=14% Similarity=0.159 Sum_probs=118.9
Q ss_pred cccccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc-
Q psy9640 20 DILARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD- 97 (199)
Q Consensus 20 ~~~~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~- 97 (199)
+.....++++||+|+||.+ ..++|++ +||.+++|+.++|+|+|||||||++++|.++++|..+. +..|+.......
T Consensus 345 ~~~~g~ief~nV~FsYPsRpdv~Il~g-~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~-V~idG~di~~~~~ 422 (1228)
T KOG0055|consen 345 SSIKGEIEFRNVCFSYPSRPDVKILKG-VSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE-VLIDGEDIRNLNL 422 (1228)
T ss_pred cccccceEEEEEEecCCCCCcchhhCC-eEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce-EEEcCccchhcch
Confidence 3445689999999999886 3589999 99999999999999999999999999999999876544 333333211111
Q ss_pred --------cc-cCCC------------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEe
Q psy9640 98 --------II-VPRG------------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILR 152 (199)
Q Consensus 98 --------~~-~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaR 152 (199)
+. ++.. ...+.+.+++.++.+......++..+|.+|+| .|.+|||||||||||||
T Consensus 423 ~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 423 KWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIAR 502 (1228)
T ss_pred HHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHH
Confidence 00 0000 01123457788888777777888999999998 68899999999999999
Q ss_pred ccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
|++. .++.|-..+.+. |+|.|+|.--|
T Consensus 503 alv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~gr--TTivVaHRLSt 550 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEATSALDAESERVVQEALDKASKGR--TTIVVAHRLST 550 (1228)
T ss_pred HHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCC--eEEEEeeehhh
Confidence 9976 556666777775 67888885443
No 22
>KOG0057|consensus
Probab=99.92 E-value=9.7e-26 Score=196.58 Aligned_cols=154 Identities=17% Similarity=0.176 Sum_probs=115.3
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC--------------------e
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP--------------------W 82 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--------------------~ 82 (199)
.+.|+++||++.|+.. +++|++ +||+|++|+.|||+|+|||||||++|+|.++++.. .
T Consensus 349 ~~~I~F~dV~f~y~~k-~~iL~g-vsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~ 426 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPK-RKVLKG-VSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQS 426 (591)
T ss_pred CCcEEEEeeEEEeCCC-Cceecc-eeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhh
Confidence 4469999999999765 469999 99999999999999999999999999999998621 2
Q ss_pred eeeecccchhccccccccCCC--CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 83 VTLLSMDSFYRVHADIIVPRG--GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 83 ~~~i~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
+|+++||...... ....+- .......+++.+..+....++.+..+|.||.| .|..|||||||||+||||++.
T Consensus 427 Ig~VPQd~~LFnd--TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 427 IGVVPQDSVLFND--TILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred eeEeCCcccccch--hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 3444444332111 111111 12234568888888666666777889999988 788999999999999999975
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+.+.+.+.+-+ -|.|.|.|+.-++
T Consensus 505 da~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~--rTvI~IvH~l~ll 549 (591)
T KOG0057|consen 505 DAPILLLDEATSALDSETEREILDMIMDVMSG--RTVIMIVHRLDLL 549 (591)
T ss_pred CCCeEEecCcccccchhhHHHHHHHHHHhcCC--CeEEEEEecchhH
Confidence 55666665555 4559999987763
No 23
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.92 E-value=4.4e-26 Score=206.44 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=110.9
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----------c
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----------R 93 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----------~ 93 (199)
..++++||+|+|++..+++|++ +|+++++|+.++|+|+||||||||+++|+|++.|..+.+ ..|+.. .
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~-i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~~~~~~~~ 417 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRN-INFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI-LLDGHDLRDYTLASLRN 417 (582)
T ss_pred CeEEEEEEEEecCCCCCccccC-ceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE-EECCEEhhhcCHHHHHh
Confidence 3699999999998655689999 999999999999999999999999999999998754332 222211 0
Q ss_pred cccccccC-----C--------CCCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 94 VHADIIVP-----R--------GGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 94 ~~~~~~~~-----~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
...-.++. . ...+..+.+++.++++..........+|.|+++ .|.+||||||||++||||++.
T Consensus 418 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 418 QVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred hceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 00000000 0 001123556777777555555556678888887 578899999999999999986
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+..++ -++|.|+|+..+
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~--~tvI~VtHr~~~ 541 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKN--RTSLVIAHRLST 541 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCC--CEEEEEecchHH
Confidence 55666665554 456999998764
No 24
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.92 E-value=4e-26 Score=210.59 Aligned_cols=154 Identities=12% Similarity=0.091 Sum_probs=111.7
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------- 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------- 94 (199)
..++++||+|+|++..+++|+| +||++++|+.++|+|+||||||||+++|+|++.|..+. +..|+....
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~-i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~-I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDN-VSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS-VLLDGVDIRQIDPADLRR 539 (694)
T ss_pred ceEEEEEEEEEeCCCCccceee-eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEEhhhCCHHHHHh
Confidence 4699999999997655679999 99999999999999999999999999999999875433 222221100
Q ss_pred ccc-cccC----------CC-CCC-CchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640 95 HAD-IIVP----------RG-GEN-CVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 95 ~~~-~~~~----------~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~- 156 (199)
... .++. +- ..+ ..+.+++.++++..........+|.+++| .|.+||||||||++||||++.
T Consensus 540 ~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 540 NIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred ccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 000 0000 00 011 24566777777555555566788999887 678999999999999999975
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+..++ -++|.|+|+..+
T Consensus 620 p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~--~T~iiItHrl~~ 662 (694)
T TIGR03375 620 PPILLLDEPTSAMDNRSEERFKDRLKRWLAG--KTLVLVTHRTSL 662 (694)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhCC--CEEEEEecCHHH
Confidence 55556666654 566999998764
No 25
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.92 E-value=3.7e-26 Score=211.26 Aligned_cols=156 Identities=19% Similarity=0.160 Sum_probs=108.5
Q ss_pred cCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640 24 RGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------- 93 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------- 93 (199)
..++++||+|+|++. .+++|+| +||++++|++++|+||||||||||+++|+|++.|..+. +..|+...
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~-isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~-I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKG-LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ-VLLDGVPLVQYDHHYLH 554 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccC-ceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE-EEECCEEHHhcCHHHHH
Confidence 469999999999864 3579999 99999999999999999999999999999999876433 32332110
Q ss_pred -cccccccCC-----C-------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 94 -VHADIIVPR-----G-------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 94 -~~~~~~~~~-----~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
...-..++. . .....+.+++.++++..........+|.++++ .|.+||||||||++||||++.
T Consensus 555 ~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 555 RQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred hhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 000011110 0 01123456777777555555566678888887 578999999999999999976
Q ss_pred -----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -----------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
.++.+.+..-...-+.|.|+|+..+
T Consensus 635 ~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~ 676 (711)
T TIGR00958 635 KPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLST 676 (711)
T ss_pred CCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHH
Confidence 3333333211224577999998664
No 26
>KOG0056|consensus
Probab=99.91 E-value=1.7e-25 Score=193.18 Aligned_cols=161 Identities=17% Similarity=0.230 Sum_probs=118.1
Q ss_pred HHhhhhhcccccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe--------
Q psy9640 11 VRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW-------- 82 (199)
Q Consensus 11 ~~~~~~~~~~~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~-------- 82 (199)
+..+...-.....+.++++||+|.|... +++|+| |||++.+|+.++++||||+||||++|+|..+++...
T Consensus 523 vd~P~a~pl~~~~G~i~fsnvtF~Y~p~-k~vl~d-isF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgq 600 (790)
T KOG0056|consen 523 VDLPGAPPLKVTQGKIEFSNVTFAYDPG-KPVLSD-ISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQ 600 (790)
T ss_pred hcCCCCCCccccCCeEEEEEeEEecCCC-Cceeec-ceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCc
Confidence 4444444445566789999999999654 599999 999999999999999999999999999999987543
Q ss_pred -------------eeeecccchhccccccccCCC--CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCC
Q psy9640 83 -------------VTLLSMDSFYRVHADIIVPRG--GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVS 143 (199)
Q Consensus 83 -------------~~~i~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgG 143 (199)
+|++++|..... +....+- ..-....++++++.+....+..+...|++|++ .|-.||||
T Consensus 601 dIrnvt~~SLRs~IGVVPQDtvLFN--dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGG 678 (790)
T KOG0056|consen 601 DIRNVTQSSLRSSIGVVPQDTVLFN--DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGG 678 (790)
T ss_pred hHHHHHHHHHHHhcCcccCcceeec--ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCc
Confidence 333333322111 1111111 11133457888888777778889999999988 67899999
Q ss_pred eeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEe
Q psy9640 144 KICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQT 177 (199)
Q Consensus 144 q~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~ 177 (199)
|||||||||+.+. +...|.+++.+.+ + |+|.|
T Consensus 679 EKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RT-t-IVvAH 731 (790)
T KOG0056|consen 679 EKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRT-T-IVVAH 731 (790)
T ss_pred chhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCc-e-EEEee
Confidence 9999999999975 6666778887743 3 45554
No 27
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.91 E-value=6.6e-26 Score=205.15 Aligned_cols=154 Identities=10% Similarity=0.096 Sum_probs=110.1
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------- 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------- 94 (199)
..++++||+|+|++..+++|+| +||++++|++++|+||||||||||+++|+|.+.|..+. +..|+....
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~-i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~-I~i~g~~i~~~~~~~~r~ 414 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKG-LSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE-ILLNGQPIADYSEAALRQ 414 (574)
T ss_pred CeEEEEEEEEECCCCCCcceec-ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEEhhhCCHHHHHh
Confidence 4699999999997654579999 99999999999999999999999999999998775433 222221100
Q ss_pred ccc-cccCC-----C-------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640 95 HAD-IIVPR-----G-------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 95 ~~~-~~~~~-----~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~- 156 (199)
... ...+. . .....+.+++.++++.......... |.|+++ .|.+||||||||++||||++.
T Consensus 415 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 415 AISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred heeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 000 00000 0 0112345667777755455555667 999998 688999999999999999976
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+.+.+.+..++ -++|.|+|+..+.
T Consensus 494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~~~--~tviiitHr~~~~ 537 (574)
T PRK11160 494 APLLLLDEPTEGLDAETERQILELLAEHAQN--KTVLMITHRLTGL 537 (574)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCC--CEEEEEecChhHH
Confidence 55666666554 5669999987653
No 28
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.91 E-value=9.4e-26 Score=203.84 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=112.5
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------- 94 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------- 94 (199)
..+++++||+|.|++. +++++| +||++++|+++||+|||||||||++++|++++++..+.+.. |+....
T Consensus 326 ~~~I~f~~vsf~y~~~-~~vl~~-is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i-dg~dI~~i~~~~lr 402 (567)
T COG1132 326 IGSIEFENVSFSYPGK-KPVLKD-ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI-DGIDIRDISLDSLR 402 (567)
T ss_pred CCeEEEEEEEEEcCCC-CccccC-ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE-CCEehhhcCHHHHH
Confidence 3459999999999852 489999 99999999999999999999999999999999885444332 432111
Q ss_pred --ccccccCCC------------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 95 --HADIIVPRG------------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 95 --~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
..-.+++.. .....+.+++.++++..........+|.++++ .|..||||||||++||||++.
T Consensus 403 ~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 010011100 01124557888888777667778888999888 578999999999999999986
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+...+ + +++.|+|...+
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~-r-T~iiIaHRlst 526 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKKLLKG-R-TTLIIAHRLST 526 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHHHhcC-C-EEEEEeccHhH
Confidence 45555555555 3 55668886543
No 29
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.91 E-value=1.5e-25 Score=200.96 Aligned_cols=154 Identities=12% Similarity=0.130 Sum_probs=110.2
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------- 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------- 94 (199)
..++++||+|+|++..++++++ +|+++++|++++|+|+||||||||+++|+|++.|..+.+ ..|+....
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~-i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I-~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRP-VSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI-AVNGVPLADADADSWRD 396 (529)
T ss_pred CeEEEEEEEEECCCCCcccccc-eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEehhhCCHHHHHh
Confidence 3699999999998754579999 999999999999999999999999999999988765333 22221100
Q ss_pred ccc-cccCCC------------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640 95 HAD-IIVPRG------------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 95 ~~~-~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~- 156 (199)
... ..+... .....+.+++.++++..........+|.++++ .|.+||||||||++||||++.
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 000 001000 01122345666777555555667788888888 578999999999999999975
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+..++ .++|.|+|+..+
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~--~t~i~itH~~~~ 519 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQG--RTVLLVTHRLAL 519 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCC--CEEEEEecCHHH
Confidence 55556555544 567999998754
No 30
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.91 E-value=2.5e-25 Score=200.95 Aligned_cols=154 Identities=17% Similarity=0.157 Sum_probs=109.4
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch----------hc
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF----------YR 93 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~----------~~ 93 (199)
..++++||+|+|++..+++|++ +|+++++|++++|+|+||||||||+++|+|.+.+..+.+. .++. +.
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~-inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~-i~g~~i~~~~~~~~~~ 406 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDS-ISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL-LDGHDLADYTLASLRR 406 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccC-eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE-ECCEeHHhcCHHHHHh
Confidence 4699999999997654579999 9999999999999999999999999999999987644332 2211 00
Q ss_pred cccccccC-----CC------CCC--CchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 94 VHADIIVP-----RG------GEN--CVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 94 ~~~~~~~~-----~~------~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
...-.++. .. ..+ ..+.+++.++++..........+|.++++ .|..||||||||++||||++.
T Consensus 407 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred hceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 00000000 00 011 24456777777554545556678888887 577899999999999999976
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+..++ -++|.|+|+...
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~--~tiIiitH~~~~ 530 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLMQG--RTTLVIAHRLST 530 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhCC--CEEEEEehhhHH
Confidence 55555555554 466999998763
No 31
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.9e-25 Score=177.64 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=98.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh-----------c
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY-----------R 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~-----------~ 93 (199)
-|+++||++.|++. +.+|++ |||+|++||+|+|+|+||||||||+|+|.++.++..+.+...+... +
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~-Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKD-VNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC-ceeeee-EeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 47899999999754 589999 9999999999999999999999999999997776654333222110 0
Q ss_pred cccccccCC-----------------CCCC--------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeee
Q psy9640 94 VHADIIVPR-----------------GGEN--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGV 148 (199)
Q Consensus 94 ~~~~~~~~~-----------------~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrv 148 (199)
...++.+.. ..+. -...++-..++ ..+. .+.+.........+|||||+|||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al-~aLe---rvgi~~~A~qra~~LSGGQQQRV 156 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQAL-DALE---RVGILDKAYQRASTLSGGQQQRV 156 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHH-HHHH---HcCcHHHHHHHhccCCcchhHHH
Confidence 111111110 0000 11112222222 2222 12222222234568999999999
Q ss_pred eEEeccch---------------------hHHHHHhhccccceeEEEEEeC
Q psy9640 149 SILRAGET---------------------MEQAVHDVCKDIRIGKILIQTN 178 (199)
Q Consensus 149 aiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~ 178 (199)
+||||+.. .++.+.+....-++|+|+--|+
T Consensus 157 aIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~ 207 (258)
T COG3638 157 AIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ 207 (258)
T ss_pred HHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech
Confidence 99999975 7788888888888988888774
No 32
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.91 E-value=3.1e-25 Score=217.01 Aligned_cols=157 Identities=16% Similarity=0.149 Sum_probs=113.7
Q ss_pred cCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC---------------------
Q psy9640 24 RGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP--------------------- 81 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--------------------- 81 (199)
..|+++||+|+|++. ..++|++ +||++++|+.+||+|+|||||||++++|++++.|.
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~-lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKD-LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccC-eeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 469999999999753 3479999 99999999999999999999999999999999872
Q ss_pred --------------------------------eeeeecccchhcccc---------c-cccCCC------------CCCC
Q psy9640 82 --------------------------------WVTLLSMDSFYRVHA---------D-IIVPRG------------GENC 107 (199)
Q Consensus 82 --------------------------------~~~~i~~d~~~~~~~---------~-~~~~~~------------~~~~ 107 (199)
..|.+..|+...... . +.+... ....
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~ 1322 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKED 1322 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCC
Confidence 344454444321110 0 111100 0112
Q ss_pred chHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch---------------------hHHHHH
Q psy9640 108 VAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET---------------------MEQAVH 162 (199)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~ 162 (199)
.+.+++.++++......++..+|.||+| .|.+||||||||||||||++. +.+.+.
T Consensus 1323 at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~ 1402 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 4557788888666666778899999998 688999999999999999986 444454
Q ss_pred hhccccceeEEEEEeCCCC
Q psy9640 163 DVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 163 ~~~p~~~~~~~~~~~~~~~ 181 (199)
+......-|+|.|+|...+
T Consensus 1403 ~~~~~~~~TvIiIaHRlst 1421 (1466)
T PTZ00265 1403 DIKDKADKTIITIAHRIAS 1421 (1466)
T ss_pred HHhccCCCEEEEEechHHH
Confidence 4421124577999996543
No 33
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.90 E-value=2.6e-25 Score=201.80 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=110.5
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------- 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------- 94 (199)
..++++||+|+|++. +++|+| +||++++|++++|+|+||||||||+++|+|++.|..+. +..|+....
T Consensus 339 ~~i~~~~v~f~y~~~-~~il~~-i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~-I~idg~~i~~~~~~~l~~ 415 (592)
T PRK10790 339 GRIDIDNVSFAYRDD-NLVLQN-INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE-IRLDGRPLSSLSHSVLRQ 415 (592)
T ss_pred CeEEEEEEEEEeCCC-Cceeec-eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce-EEECCEEhhhCCHHHHHh
Confidence 469999999999753 479999 99999999999999999999999999999999876433 333322110
Q ss_pred -ccccccCCC-----------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640 95 -HADIIVPRG-----------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 95 -~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
..-.++... ..++.+.+++.++++..........+|.|+++ .|.+||||||||++||||++.
T Consensus 416 ~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 416 GVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred heEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 000111100 01133456777777555555566678988887 678999999999999999976
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+..++ -++|.|+|+..+
T Consensus 496 ~illlDEpts~LD~~t~~~i~~~l~~~~~~--~tvIivtHr~~~ 537 (592)
T PRK10790 496 QILILDEATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLST 537 (592)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhCC--CEEEEEecchHH
Confidence 55556665554 567999997754
No 34
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=8.9e-25 Score=177.55 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=103.3
Q ss_pred Ccccccceeecccc-------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc
Q psy9640 25 GRDLEGVIKQYVNM-------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD 97 (199)
Q Consensus 25 ~i~l~nvs~~y~~~-------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~ 97 (199)
-++++|+++.|+.. ...++++ |||+|++|+++||+|+|||||||+.|+|++++.|..+.++..+.-.....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~-Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDG-VSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecc-eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 47899999999643 1479999 99999999999999999999999999999999887665544332111000
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHhcCceeecCC-ceeeecceecCCeeeeeeEEeccch--------------------
Q psy9640 98 IIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQ-GYTYEGKRCAVSKICGVSILRAGET-------------------- 156 (199)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~g~~lSgGq~QrvaiaRA~~~-------------------- 156 (199)
.....+.+.+.+ . .+.++. .+...+++|||||+|||+||||++.
T Consensus 82 --------~~~~~~~v~elL----~---~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqa 146 (268)
T COG4608 82 --------KEERRERVLELL----E---KVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQA 146 (268)
T ss_pred --------hhHHHHHHHHHH----H---HhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHH
Confidence 001112233333 1 233443 3455788999999999999999965
Q ss_pred -hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+...+.++....+++.++|+||=+.
T Consensus 147 qIlnLL~dlq~~~~lt~lFIsHDL~v 172 (268)
T COG4608 147 QILNLLKDLQEELGLTYLFISHDLSV 172 (268)
T ss_pred HHHHHHHHHHHHhCCeEEEEEEEHHh
Confidence 6777888888999999999998764
No 35
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.90 E-value=3.6e-25 Score=204.70 Aligned_cols=152 Identities=18% Similarity=0.140 Sum_probs=107.5
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------- 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------- 94 (199)
..++++||+|+|++. +++|+| +|+++++|+.++|+|+||||||||+++|+|++.|..+. +..|+....
T Consensus 472 ~~I~~~~vsf~y~~~-~~iL~~-isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~-I~idg~~i~~~~~~~lr~ 548 (708)
T TIGR01193 472 GDIVINDVSYSYGYG-SNILSD-ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE-ILLNGFSLKDIDRHTLRQ 548 (708)
T ss_pred CcEEEEEEEEEcCCC-Ccceec-eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE-EEECCEEHHHcCHHHHHH
Confidence 469999999999743 479999 99999999999999999999999999999998876433 222221100
Q ss_pred ccc-cccC----------C--CC-CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 95 HAD-IIVP----------R--GG-ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 95 ~~~-~~~~----------~--~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
... .++. + .. ....+.+++.++++..........+|.++++ .|..||||||||++||||++.
T Consensus 549 ~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred heEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 000 0000 0 01 1123456677777555445556678998887 578999999999999999976
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+ ++ .-+.|.|+|+..+
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~-~~--~~T~IiitHr~~~ 671 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLN-LQ--DKTIIFVAHRLSV 671 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHH-hc--CCEEEEEecchHH
Confidence 4444544 23 3567999997764
No 36
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.90 E-value=3.9e-25 Score=191.40 Aligned_cols=161 Identities=16% Similarity=0.108 Sum_probs=118.1
Q ss_pred cccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc--
Q psy9640 20 DILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD-- 97 (199)
Q Consensus 20 ~~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~-- 97 (199)
..++..+.++++++.=|+..++++++ +||++.+|+.++|+||||||||||+|.|.|.+.|.. |.+..|+....+-+
T Consensus 329 P~P~g~L~Ve~l~~~PPg~~~pil~~-isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~-G~VRLDga~l~qWd~e 406 (580)
T COG4618 329 PAPQGALSVERLTAAPPGQKKPILKG-ISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS-GSVRLDGADLRQWDRE 406 (580)
T ss_pred CCCCceeeEeeeeecCCCCCCcceec-ceeEecCCceEEEECCCCccHHHHHHHHHcccccCC-CcEEecchhhhcCCHH
Confidence 34456799999999778877899999 999999999999999999999999999999887643 33444443211100
Q ss_pred --------ccc-----C-----C--CCCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEec
Q psy9640 98 --------IIV-----P-----R--GGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRA 153 (199)
Q Consensus 98 --------~~~-----~-----~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA 153 (199)
+++ + + ...++.+.+.+.++.+...-++.+..+|.||+| .|..|||||||||++|||
T Consensus 407 ~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARA 486 (580)
T COG4618 407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARA 486 (580)
T ss_pred HhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHH
Confidence 000 0 0 012245567788777555556678899999999 688999999999999999
Q ss_pred cch---------------------hHHHHHhhccccceeEEEEEeCCCCCC
Q psy9640 154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKATDE 183 (199)
Q Consensus 154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~~ 183 (199)
+.. ....+ .-....+.++|+|+|-+..+.
T Consensus 487 lYG~P~lvVLDEPNsNLD~~GE~AL~~Ai-~~~k~rG~~vvviaHRPs~L~ 536 (580)
T COG4618 487 LYGDPFLVVLDEPNSNLDSEGEAALAAAI-LAAKARGGTVVVIAHRPSALA 536 (580)
T ss_pred HcCCCcEEEecCCCCCcchhHHHHHHHHH-HHHHHcCCEEEEEecCHHHHh
Confidence 965 22222 233466899999999877543
No 37
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.90 E-value=4.1e-25 Score=203.94 Aligned_cols=154 Identities=17% Similarity=0.219 Sum_probs=109.7
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc--------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH-------- 95 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~-------- 95 (199)
..++++||+|+|++..+++|++ +||++++|+.++|+|+||||||||+++|+|.+.|..+. +..|+.....
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~-i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~-I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSN-LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ-VLVDGVDLAIADPAWLRR 531 (694)
T ss_pred CeEEEEEEEEEcCCCCcccccc-ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEehhhCCHHHHHH
Confidence 4699999999997654579999 99999999999999999999999999999998776433 3333321100
Q ss_pred -cc-cccCCC----------C-CC-CchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640 96 -AD-IIVPRG----------G-EN-CVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 96 -~~-~~~~~~----------~-~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~- 156 (199)
.. ...... . .+ ..+.+++.++++..........+|.++++ .|.+|||||+||++||||++.
T Consensus 532 ~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~ 611 (694)
T TIGR01846 532 QMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN 611 (694)
T ss_pred hCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 00 000000 0 11 23456677777544444556678888887 578999999999999999976
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+..++ .++|.++|+..+
T Consensus 612 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~--~t~i~itH~~~~ 654 (694)
T TIGR01846 612 PRILIFDEATSALDYESEALIMRNMREICRG--RTVIIIAHRLST 654 (694)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHhCC--CEEEEEeCChHH
Confidence 44555555444 567999998765
No 38
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.90 E-value=7.1e-25 Score=198.91 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=106.8
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch----------hc
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF----------YR 93 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~----------~~ 93 (199)
..++++||+|.|++. +++|++ +|+++++|++++|+|+||||||||+++|+|++.|..+.+ ..|+. +.
T Consensus 333 ~~I~~~~vsf~y~~~-~~iL~~-inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I-~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 333 GAVEFDDVSFSYDNS-RQGVED-VSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI-LIDGTDIRTVTRASLRR 409 (588)
T ss_pred CeEEEEEEEEEeCCC-Cceecc-eeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCEEhhhCCHHHHHh
Confidence 359999999999753 479999 999999999999999999999999999999998754332 22221 00
Q ss_pred cccccccCCC------------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640 94 VHADIIVPRG------------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 94 ~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~- 156 (199)
...-.++... .....+.+++..+++..........+|.++++ .|..|||||+||++||||++.
T Consensus 410 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 410 NIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred heEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 0000011100 01122345666666444444555568888887 577899999999999999976
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+..++ -+.|.|+|+...
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~--~tvIiitHr~~~ 532 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELMKG--RTTFIIAHRLST 532 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhcC--CEEEEEEecHHH
Confidence 55555555444 566999998753
No 39
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-24 Score=190.27 Aligned_cols=151 Identities=15% Similarity=0.148 Sum_probs=109.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------c
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------V 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~ 94 (199)
++.++|+++.|++.. +++++ +++++++|+.++|+|+||||||||++.|+|++.+.. |.+..++... .
T Consensus 320 ei~~~~l~~~y~~g~-~~l~~-l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~-G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 320 EISLENLSFRYPDGK-PALSD-LNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ-GEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred eeeecceEEecCCCC-cccCC-ceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCC-ceEEECCccccccCHHHHHhH
Confidence 455669999998763 89999 999999999999999999999999999999987643 3344333211 1
Q ss_pred cccccc-----CCC-C-----CCC-chHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640 95 HADIIV-----PRG-G-----ENC-VAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 95 ~~~~~~-----~~~-~-----~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
.....+ ... . .++ .+.+++.+++......++... |.|+++ .|..|||||+|||++|||++.
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 111111 110 0 112 345777778866655555445 888887 788999999999999999975
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+...+. +++.|+|+.+.
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~~k--tvl~itHrl~~ 517 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQALQELAKQK--TVLVITHRLED 517 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHHHHHHhCC--eEEEEEcChHH
Confidence 666777777774 45999997653
No 40
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=1.4e-24 Score=173.14 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=109.8
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------- 93 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------- 93 (199)
+.-|++++|+++|.++ .++++ ++|+|++|++++|+|+||||||||+|+|.|++.|..+.+.....-..
T Consensus 6 ~~~I~vr~v~~~fG~~--~Ild~-v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFGDR--VILDG-VDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecCCE--EEecC-ceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 4469999999999876 89999 99999999999999999999999999999999887544432211100
Q ss_pred --cccccccCCC--------CCC--------CchHHHHHHHHHHHHhcCceeecCCc-eeeecceecCCeeeeeeEEecc
Q psy9640 94 --VHADIIVPRG--------GEN--------CVAIDLIVQHIHSQLQAGVSVDMPQG-YTYEGKRCAVSKICGVSILRAG 154 (199)
Q Consensus 94 --~~~~~~~~~~--------~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~g~~lSgGq~QrvaiaRA~ 154 (199)
...++.+..+ .+| ..-.+.+.+.+ +..+-..+.++.. .+..|.+|||||+.|+|||||+
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~l--v~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAi 160 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIREL--VLMKLELVGLRGAAADLYPSELSGGMRKRVALARAI 160 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHH--HHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHH
Confidence 0011111111 111 11112222222 1111234566654 5667889999999999999999
Q ss_pred ch---------------------hHHHHHhhccccceeEEEEEeCCCCCC
Q psy9640 155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKATDE 183 (199)
Q Consensus 155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~~ 183 (199)
.. +.+++.++...++.|++.|+||-.++-
T Consensus 161 aldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~ 210 (263)
T COG1127 161 ALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLL 210 (263)
T ss_pred hcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHH
Confidence 64 888888999999999999999877643
No 41
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.89 E-value=1.9e-24 Score=195.44 Aligned_cols=154 Identities=16% Similarity=0.149 Sum_probs=106.1
Q ss_pred cCcccccceeeccccc-cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----------
Q psy9640 24 RGRDLEGVIKQYVNMV-KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY---------- 92 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~-~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~---------- 92 (199)
..++++||+|+|++.. +++|++ +||++++|+.++|+|+||||||||+++|+|++.|..+.+ ..|+..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~-inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I-~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDG-LNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI-LLDGVDLRQLDPAELR 413 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccc-eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-EECCEEHHhcCHHHHH
Confidence 3599999999997532 579999 999999999999999999999999999999988754332 222210
Q ss_pred ccccccccCC-----C------CCCC-chHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 93 RVHADIIVPR-----G------GENC-VAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 93 ~~~~~~~~~~-----~------~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
....-.++.. . ..++ .+.+++.++++..........+|.++++ .|..|||||+||++||||++.
T Consensus 414 ~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~ 493 (576)
T TIGR02204 414 ARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK 493 (576)
T ss_pred HhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 0000000000 0 0111 2345666666443333344566777665 577899999999999999975
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+..++ .+.|.|+|+...
T Consensus 494 ~~~ililDEpts~lD~~~~~~i~~~l~~~~~~--~t~IiitH~~~~ 537 (576)
T TIGR02204 494 DAPILLLDEATSALDAESEQLVQQALETLMKG--RTTLIIAHRLAT 537 (576)
T ss_pred CCCeEEEeCcccccCHHHHHHHHHHHHHHhCC--CEEEEEecchHH
Confidence 55566666654 567999998754
No 42
>PLN03232 ABC transporter C family member; Provisional
Probab=99.89 E-value=2.1e-24 Score=212.23 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=112.4
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------- 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------- 94 (199)
+.|+++||+|+|++..+++|+| +||+|++|+.+||+|+||||||||+++|.+++.+..+. +..|+....
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~-isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~-I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHG-LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGR-IMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred CcEEEEEEEEEECCCCCccccc-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCce-EEECCEEhhhCCHHHHHh
Confidence 4699999999996554589999 99999999999999999999999999999998775432 333322110
Q ss_pred -ccccccCC----------C-CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640 95 -HADIIVPR----------G-GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 95 -~~~~~~~~----------~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
..-.+++. - ..+..+.++++++++..........+|.++++ .|.+||||||||++||||++.
T Consensus 1311 ~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1311 VLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred hcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 00001100 0 01234567788888655555566678888887 578999999999999999976
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.+++. |+|.|+|.-.+
T Consensus 1391 ~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~--TvI~IAHRl~t 1432 (1495)
T PLN03232 1391 KILVLDEATASVDVRTDSLIQRTIREEFKSC--TMLVIAHRLNT 1432 (1495)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHcCCC--EEEEEeCCHHH
Confidence 666677777764 45999997654
No 43
>PLN03130 ABC transporter C family member; Provisional
Probab=99.89 E-value=2.7e-24 Score=212.10 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=113.4
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------- 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------- 94 (199)
+.|+++||+|+|++..+++|+| +||+|++|+.+||+|+||||||||+++|.+++.+..+ .+..|+....
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~-is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G-~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHG-LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERG-RILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCc-eEEECCEecccCCHHHHHh
Confidence 4699999999997654579999 9999999999999999999999999999999877543 2333332111
Q ss_pred -ccccccCCC-----------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640 95 -HADIIVPRG-----------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 95 -~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
..-.++... ..++.+.++++++++.......+..+|.++++ .|.+||||||||++||||++.
T Consensus 1314 ~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p 1393 (1622)
T PLN03130 1314 VLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRS 1393 (1622)
T ss_pred ccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 000011100 01234567788888665555666778888888 578999999999999999986
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.+++. |+|.|+|.-.+
T Consensus 1394 ~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~--TvI~IAHRL~t 1435 (1622)
T PLN03130 1394 KILVLDEATAAVDVRTDALIQKTIREEFKSC--TMLIIAHRLNT 1435 (1622)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCC--EEEEEeCChHH
Confidence 666677777654 55999996664
No 44
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.89 E-value=3.8e-24 Score=188.62 Aligned_cols=155 Identities=17% Similarity=0.136 Sum_probs=105.2
Q ss_pred cCcccccceeeccc---------cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc
Q psy9640 24 RGRDLEGVIKQYVN---------MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~---------~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~ 94 (199)
.-++++|+++.|.. ....++++ |||++.+||++||+|+||||||||+|.|+|+..|. .|.+..++....
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~-VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~-~G~i~~~g~~~~ 356 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDD-VSFDLREGETLGLVGESGSGKSTLARILAGLLPPS-SGSIIFDGQDLD 356 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeee-eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEEeCcccc
Confidence 34779999999973 23578999 99999999999999999999999999999999884 444443332110
Q ss_pred cc-------------ccccCCCCCCCc-hH-HHHHHHHH-----------H-HHhcCceeecCC-ceeeecceecCCeee
Q psy9640 95 HA-------------DIIVPRGGENCV-AI-DLIVQHIH-----------S-QLQAGVSVDMPQ-GYTYEGKRCAVSKIC 146 (199)
Q Consensus 95 ~~-------------~~~~~~~~~~~~-~~-~~~~~~l~-----------~-~~~~~~~~~~~~-~~~~~g~~lSgGq~Q 146 (199)
.. -++.+....|+. +. +.+.+.+. + ....-..+.++. .++..+.+|||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 00 001111111211 00 11111110 0 000012345554 356689999999999
Q ss_pred eeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 147 GVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 147 rvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|||||||+.. ..++++++..+.+++.|+|+||=.
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~ 491 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA 491 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 9999999965 888999999999999999999865
No 45
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.89 E-value=5e-24 Score=192.75 Aligned_cols=154 Identities=17% Similarity=0.161 Sum_probs=106.2
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------c
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------V 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~ 94 (199)
..++++|++|+|+...+++|++ +|+++++|++++|+||||||||||+++|+|++.|..+.+ ..++... .
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~-i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i-~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALEN-VNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI-RFHDIPLTKLQLDSWRS 389 (569)
T ss_pred CcEEEEEEEEECCCCCCccccC-eeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEHhhCCHHHHHh
Confidence 4589999999997644579999 999999999999999999999999999999987754432 2222110 0
Q ss_pred cccc-ccCC-----C-------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640 95 HADI-IVPR-----G-------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 95 ~~~~-~~~~-----~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~- 156 (199)
.... .... . .....+.+.+..+++..........+|.++++ .|.+|||||+||++||||++.
T Consensus 390 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~ 469 (569)
T PRK10789 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN 469 (569)
T ss_pred heEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 0000 0000 0 00122344555555333333445678888776 577899999999999999976
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+..++ .+.|.++|+..+
T Consensus 470 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~--~tii~itH~~~~ 512 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQWGEG--RTVIISAHRLSA 512 (569)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCC--CEEEEEecchhH
Confidence 55556665544 567999998754
No 46
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.3e-23 Score=163.21 Aligned_cols=151 Identities=14% Similarity=0.095 Sum_probs=100.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc----ccccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH----ADIIV 100 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~----~~~~~ 100 (199)
.+.+++++.+|++..+.++++ +|++|.+|+++++.||||||||||+++++|+..|..+. +..++....- ....+
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~-vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~-i~l~~r~i~gPgaergvVF 80 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALED-VSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS-IQLNGRRIEGPGAERGVVF 80 (259)
T ss_pred eeehhheEEecCCcchhhhhc-cceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccce-EEECCEeccCCCccceeEe
Confidence 367789999998876779999 99999999999999999999999999999988775432 2222211000 00111
Q ss_pred CCC--------CCC--------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--------
Q psy9640 101 PRG--------GEN--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-------- 156 (199)
Q Consensus 101 ~~~--------~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-------- 156 (199)
.+. ..| .....+-.+...+.+ ..+.+...-+....+||||||||+.||||+..
T Consensus 81 Q~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l---~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD 157 (259)
T COG4525 81 QNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQML---ALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD 157 (259)
T ss_pred ccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHH---HHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeec
Confidence 111 011 000001111111111 12333332233567999999999999999965
Q ss_pred -------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|.+.|.++-...+-++++||||=+
T Consensus 158 EPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie 194 (259)
T COG4525 158 EPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE 194 (259)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 888889999999999999999643
No 47
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=7.9e-24 Score=166.21 Aligned_cols=152 Identities=12% Similarity=0.104 Sum_probs=96.3
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe----eeeecccchh--c----
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW----VTLLSMDSFY--R---- 93 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~----~~~i~~d~~~--~---- 93 (199)
..++++|+++.|... .+|++ |++.|+++.+.|++|||||||||++|++-.+..... -|.+..++.. .
T Consensus 6 ~~~~~~~l~~yYg~~--~aL~~-i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGDK--HALKD-INLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECch--hhhcc-CceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 358899999999866 89999 999999999999999999999999999977654321 2333333211 1
Q ss_pred -----cccccccCCCC------CC---------CchHHHHHHHHHHHHhcCcee-ecCCceeeecceecCCeeeeeeEEe
Q psy9640 94 -----VHADIIVPRGG------EN---------CVAIDLIVQHIHSQLQAGVSV-DMPQGYTYEGKRCAVSKICGVSILR 152 (199)
Q Consensus 94 -----~~~~~~~~~~~------~~---------~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~g~~lSgGq~QrvaiaR 152 (199)
...++.+.+.. ++ ......+.+.++..+...... +.+..++..+..|||||+||++|||
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence 11112221111 00 000122222222222221111 2333455577789999999999999
Q ss_pred ccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|+.. +++++.++-.+ .+.|.|||+-+
T Consensus 163 alAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~--yTIviVTHnmq 209 (253)
T COG1117 163 ALAVKPEVLLMDEPTSALDPISTLKIEELITELKKK--YTIVIVTHNMQ 209 (253)
T ss_pred HHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhc--cEEEEEeCCHH
Confidence 9964 67777777755 55599999644
No 48
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.88 E-value=2e-23 Score=160.47 Aligned_cols=143 Identities=13% Similarity=0.117 Sum_probs=96.7
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh--------ccccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY--------RVHAD 97 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~--------~~~~~ 97 (199)
+.+++|.+.|... +. . .+++++.|++++|+||||||||||+++|+|+..|..+.+. .++.. +....
T Consensus 2 l~L~~V~~~y~~~--~~--~-fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~-i~g~d~t~~~P~~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL--PM--R-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL-INGVDHTASPPAERPVSM 75 (231)
T ss_pred ccccceEEeeCcc--eE--E-EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEE-EcCeecCcCCcccCChhh
Confidence 5688999999754 21 3 5789999999999999999999999999999887655443 22211 11000
Q ss_pred cccCCCC-------------------CCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640 98 IIVPRGG-------------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 98 ~~~~~~~-------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
+..++.. .+..+.+.+..++... .+....+.-|.+||||||||||+||+++.
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~v-------Gl~~~~~RLP~~LSGGqRQRvALARclvR~~ 148 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQV-------GLAGFLKRLPGELSGGQRQRVALARCLVREQ 148 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHh-------ChhhHhhhCccccCchHHHHHHHHHHHhccC
Confidence 0001100 1111223333333222 22222333466899999999999999976
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
|..++.++|-+.+.|.+.|+|+++.
T Consensus 149 PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D 192 (231)
T COG3840 149 PILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED 192 (231)
T ss_pred CeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 8889999999999999999997663
No 49
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.88 E-value=6.6e-24 Score=208.98 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=114.0
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc-------
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH------- 95 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~------- 95 (199)
.+.|+++||+++|++...++|+| +||++++|+.+||+|+||||||||+++|.+++.+..+ .+..|+.....
T Consensus 1282 ~g~I~f~nVsf~Y~~~~~~vL~~-is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G-~I~IdG~dI~~i~~~~LR 1359 (1522)
T TIGR00957 1282 RGRVEFRNYCLRYREDLDLVLRH-INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEG-EIIIDGLNIAKIGLHDLR 1359 (1522)
T ss_pred CCcEEEEEEEEEeCCCCcccccc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCC-eEEECCEEccccCHHHHH
Confidence 35699999999997654579999 9999999999999999999999999999998876532 23333321110
Q ss_pred ---cccccC----------CC-CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640 96 ---ADIIVP----------RG-GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 96 ---~~~~~~----------~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~- 156 (199)
.-.+++ +. ..+..+.++++++++..........+|.++++ .|.+||||||||++||||++.
T Consensus 1360 ~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1360 FKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred hcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 000110 00 01234567788888655555666778888887 578999999999999999986
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.+++. |+|.|+|.-.+
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~--TvI~IAHRl~t 1482 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTIRTQFEDC--TVLTIAHRLNT 1482 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCC--EEEEEecCHHH
Confidence 667777777764 45999997665
No 50
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.88 E-value=1e-23 Score=189.84 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=105.3
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------- 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------- 94 (199)
..++++|++|+|++..++++++ +|+++++|++++|+|+||||||||+++|+|.+.|..+.+ ..++....
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~-~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRG-ISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV-RLDGADLKQWDRETFGK 392 (544)
T ss_pred CeEEEEEEEEEcCCCCcccccc-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEehhhCCHHHHhh
Confidence 4699999999997654589999 999999999999999999999999999999987654332 22221100
Q ss_pred ccc-cccCC-----C------CCC-CchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640 95 HAD-IIVPR-----G------GEN-CVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 95 ~~~-~~~~~-----~------~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~- 156 (199)
... .+... . ..+ ..+.+++.++++..........+|.++++ .|.+|||||+||++||||++.
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 000 00000 0 011 13345566665433333445567777776 578999999999999999976
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+... -+.+.|.++|+...
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~~ 516 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPSL 516 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHH
Confidence 4444444432 14577999998753
No 51
>PTZ00243 ABC transporter; Provisional
Probab=99.88 E-value=7.8e-24 Score=208.47 Aligned_cols=155 Identities=14% Similarity=0.039 Sum_probs=112.3
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------- 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------- 94 (199)
+.|+++||+|+|++..+++|+| +||+|++|+.|||+|+||||||||+++|++++.+..+ .|..|+....
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~-vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G-~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRG-VSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGG-EIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeec-ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEcccCCHHHHHh
Confidence 4699999999997654579999 9999999999999999999999999999999876542 2333332110
Q ss_pred -ccccccCCC-----------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640 95 -HADIIVPRG-----------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 95 -~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
..-.++... ..+..+.++++++++..........+|.++++ .|.+||||||||++||||++.
T Consensus 1385 ~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~ 1464 (1560)
T PTZ00243 1385 QFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKG 1464 (1560)
T ss_pred cceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCC
Confidence 000011000 01234567888888666555666778998887 578999999999999999984
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+.+.+.+.+.+ -|+|.|+|.-.++
T Consensus 1465 ~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~--~TvI~IAHRl~ti 1508 (1560)
T PTZ00243 1465 SGFILMDEATANIDPALDRQIQATVMSAFSA--YTVITIAHRLHTV 1508 (1560)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHCCC--CEEEEEeccHHHH
Confidence 34455555555 4569999976653
No 52
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=3e-23 Score=158.15 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=99.3
Q ss_pred Ccccccceeeccc--cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640 25 GRDLEGVIKQYVN--MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------- 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~--~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------- 93 (199)
-|++++++++... ...++|++ |++.+++|+.++|+||||||||||+-.++|+-.+..+ .+...+...
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~-V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssG-eV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKG-VELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG-EVRLLGQPLHKLDEDARA 83 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeec-ceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCc-eEEEcCcchhhcCHHHHH
Confidence 5788999998754 34579999 9999999999999999999999999888887765533 232211100
Q ss_pred ----cccccccC--------CCCCC---------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEe
Q psy9640 94 ----VHADIIVP--------RGGEN---------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILR 152 (199)
Q Consensus 94 ----~~~~~~~~--------~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaR 152 (199)
....+.+. ...+| +...+.... ..+.+ ..+.+...+...|.+||||++|||||||
T Consensus 84 ~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~-A~~lL---~~vGLg~Rl~HyP~qLSGGEQQRVAiAR 159 (228)
T COG4181 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG-AKALL---EAVGLGKRLTHYPAQLSGGEQQRVALAR 159 (228)
T ss_pred HhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHH-HHHHH---HHhCcccccccCccccCchHHHHHHHHH
Confidence 00000000 00011 111111111 11111 1234444445568899999999999999
Q ss_pred ccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|+.. +-+++-.+..+.+.+.|+||||+.
T Consensus 160 Afa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~ 208 (228)
T COG4181 160 AFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ 208 (228)
T ss_pred HhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH
Confidence 9976 667778888899999999999986
No 53
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.87 E-value=1.4e-23 Score=190.40 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=103.7
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------- 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------- 94 (199)
..++++||+|+|++. .+++++ +|+++++|++++|+|+||||||||+++|+|.+.+..+.+ ..|+....
T Consensus 333 ~~i~~~~v~~~y~~~-~~~l~~-i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~g~~~~~~~~~~~~~ 409 (585)
T TIGR01192 333 GAVEFRHITFEFANS-SQGVFD-VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI-LIDGIDINTVTRESLRK 409 (585)
T ss_pred CeEEEEEEEEECCCC-Cccccc-eeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE-EECCEEhhhCCHHHHHh
Confidence 359999999999754 368999 999999999999999999999999999999987754433 22221100
Q ss_pred ccc-cccCCC------------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640 95 HAD-IIVPRG------------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 95 ~~~-~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~- 156 (199)
... ...... .....+.+++.++++..........+|.++++ .|..|||||+||++||||++.
T Consensus 410 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 410 SIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred heEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 000 000000 00112334555555333333344567777665 577899999999999999976
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+..++ .++|.++|+..+
T Consensus 490 p~ililDEpts~LD~~~~~~i~~~l~~~~~~--~tvI~isH~~~~ 532 (585)
T TIGR01192 490 APILVLDEATSALDVETEARVKNAIDALRKN--RTTFIIAHRLST 532 (585)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHhCC--CEEEEEEcChHH
Confidence 55555555554 566999998754
No 54
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=8.3e-23 Score=165.41 Aligned_cols=151 Identities=13% Similarity=0.103 Sum_probs=102.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc----------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------- 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------- 94 (199)
-++++|++|+|++. .+++++ +|+++++|+.++|+|+||||||||++.|.|++.|..+.+ ..++....
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~-v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKD-VSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSLLELRQ 79 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeee-eEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE-EECCeeccchhhHHHhhc
Confidence 46789999999776 689999 999999999999999999999999999999888765433 22222110
Q ss_pred cccccc--CCC-C-------------CC-CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640 95 HADIIV--PRG-G-------------EN-CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 95 ~~~~~~--~~~-~-------------~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~- 156 (199)
.....+ +.. . .| ....+++...+.+.+. .+.+....+..+..|||||+||||||.++..
T Consensus 80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~---~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~ 156 (235)
T COG1122 80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALE---LVGLEELLDRPPFNLSGGQKQRVAIAGVLAMG 156 (235)
T ss_pred ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHH---HcCchhhccCCccccCCcceeeHHhhHHHHcC
Confidence 011111 100 0 11 1112233333323332 2333333455677999999999999999864
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.++...-+.+.|.++||-+.
T Consensus 157 P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 157 PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 6777777777767888999998664
No 55
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.87 E-value=2.4e-23 Score=178.22 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=100.4
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------ccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HAD 97 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~ 97 (199)
.++++|++++|++. .+|++ +||++++|++++|+||||||||||+++|+|+..+..+. +..++.... ...
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~-I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGAF--TALKD-ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGT-IYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred EEEEEEEEEEeCCe--EEEEe-eEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEE
Confidence 58899999999764 68999 99999999999999999999999999999988765443 333322110 011
Q ss_pred cccCCC--CCCCch--------------HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 98 IIVPRG--GENCVA--------------IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 98 ~~~~~~--~~~~~~--------------~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
+.+... ..+... .......+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~---~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ll 156 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLD---LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLL 156 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 111110 000000 0111111211111 2334444455788999999999999999975
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+...+.++++|.++||++
T Consensus 157 LLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 157 LLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 667777777777889999999876
No 56
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.87 E-value=7.1e-23 Score=174.55 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=98.6
Q ss_pred cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640 26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------- 93 (199)
Q Consensus 26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------- 93 (199)
|+++||+++|+.. ..++|++ +||++++|++++|+|+||||||||+++|+|++.+..+.+ ..++...
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~-vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I-~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNN-VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV-IVDGQDLTTLSNSELTK 79 (343)
T ss_pred EEEEEEEEEECCCCcceEEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHHHHHH
Confidence 6789999999632 2479999 999999999999999999999999999999887765433 3332111
Q ss_pred --cccccccCC-CCC-CCchHH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640 94 --VHADIIVPR-GGE-NCVAID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE 155 (199)
Q Consensus 94 --~~~~~~~~~-~~~-~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~ 155 (199)
....+.+.. ... .....+ ...+.+.+.+. .+.+....+..+.+|||||+|||+||||++
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~---~vgL~~~~~~~~~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLA---LVGLGDKHDSYPSNLSGGQKQRVAIARALA 156 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 001111111 111 000001 11111111111 233333345567899999999999999997
Q ss_pred h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
. +.+.+.++..+.+++.|+++||.+
T Consensus 157 ~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 157 SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 6 667777777766889999999765
No 57
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.8e-23 Score=176.55 Aligned_cols=150 Identities=11% Similarity=0.113 Sum_probs=97.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------ccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HAD 97 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~ 97 (199)
.++++|+++.|++. ..+|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++.... ...
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~-vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKG-IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE-IWIGGRVVNELEPADRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEee-eeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEE
Confidence 47899999999422 379999 99999999999999999999999999999988765443 333322110 011
Q ss_pred cccCCC--CCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 98 IIVPRG--GENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 98 ~~~~~~--~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
+.+... ..+.. ......+.+.+.+. .+.+....+..+.+|||||+|||+||||+..
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~ll 156 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAAR---ILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVF 156 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHH---HcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 111110 00000 00111111211111 1233333345677999999999999999975
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++....++++|.++||.+
T Consensus 157 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 196 (356)
T PRK11650 157 LFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV 196 (356)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 566666776666889999999875
No 58
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.7e-23 Score=176.26 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=99.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------cccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHAD 97 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~ 97 (199)
.|+++|+++.|++. .++++ +||++++|++++|+||||||||||+++|+|+..+..+. +..++... ....
T Consensus 6 ~l~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGSN--TVIDN-LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ-IFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred EEEEEeEEEEECCe--EEEee-eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEE
Confidence 58899999999754 78999 99999999999999999999999999999998766543 33332211 0011
Q ss_pred cccCC-C-CCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 98 IIVPR-G-GENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 98 ~~~~~-~-~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
+.+.. . ..+.. ......+.+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~---~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lL 158 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALE---LVDLAGFEDRYVDQISGGQQQRVALARALILKPKVL 158 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHH---HcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 11111 0 00100 00111112211111 1223333345678999999999999999975
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+...+.++..+.++++|.++||++
T Consensus 159 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 198 (351)
T PRK11432 159 LFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS 198 (351)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 666677777777889999999876
No 59
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.87 E-value=3.9e-23 Score=186.44 Aligned_cols=155 Identities=13% Similarity=0.030 Sum_probs=103.1
Q ss_pred cCcccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc------
Q psy9640 24 RGRDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV------ 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~------ 94 (199)
..++++||+|+|++. .+++|++ +||++++|++++|+||||||||||+++|+|++.|..+.+ ..|+....
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~-vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i-~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGP-IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI-LLDGAAVSADSRDD 413 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceecc-ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHHH
Confidence 469999999999753 2369999 999999999999999999999999999999988765433 23221110
Q ss_pred ---cccc-ccC-----C-CCCC---CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 95 ---HADI-IVP-----R-GGEN---CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 95 ---~~~~-~~~-----~-~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
.... ... . ..+| ..+.+++.+.++..........+|.++++ +.+||||||||++||||++.
T Consensus 414 ~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~~~~il 492 (555)
T TIGR01194 414 YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLEDRPIL 492 (555)
T ss_pred HHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 0000 000 0 0111 12234555556333334455568888887 47899999999999999976
Q ss_pred ------------hH----HHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ------------ME----QAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ------------~~----~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
.. +.+.+.+...+-+.|.|+|+..+
T Consensus 493 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~ 533 (555)
T TIGR01194 493 LFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY 533 (555)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 22 33322221225677999998754
No 60
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.86 E-value=7.1e-23 Score=175.77 Aligned_cols=151 Identities=11% Similarity=0.090 Sum_probs=99.8
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe-eeeecccchhc-------cc
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW-VTLLSMDSFYR-------VH 95 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~-~~~i~~d~~~~-------~~ 95 (199)
+.++++||+++|++. .++++ +||++++|++++|+||||||||||+++|+|++.+.. .|.+..++... ..
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~-vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGAN--TVLDD-LSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECCe--EEEee-eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 368999999999764 79999 999999999999999999999999999999887655 13343333211 01
Q ss_pred cccccCCC-CC-CCchH--------------HHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---
Q psy9640 96 ADIIVPRG-GE-NCVAI--------------DLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--- 156 (199)
Q Consensus 96 ~~~~~~~~-~~-~~~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--- 156 (199)
..+.+... .. +.... ....+.+.+.+ ..+.+....+..+.+|||||+|||+||||++.
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l---~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ 157 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADAL---KLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPD 157 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH---HhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 11111111 00 10000 11111121111 12333333455678999999999999999975
Q ss_pred ------------------hHHHHHhhcccc-ceeEEEEEeCCC
Q psy9640 157 ------------------MEQAVHDVCKDI-RIGKILIQTNKA 180 (199)
Q Consensus 157 ------------------~~~~l~~~~p~~-~~~~~~~~~~~~ 180 (199)
+.+.+.++.... ++++|.++||.+
T Consensus 158 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ 200 (362)
T TIGR03258 158 VLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD 200 (362)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 666666666665 688999999876
No 61
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.86 E-value=7.7e-23 Score=169.54 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=102.7
Q ss_pred cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC----eeeeecccchhc-ccc--
Q psy9640 26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP----WVTLLSMDSFYR-VHA-- 96 (199)
Q Consensus 26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~----~~~~i~~d~~~~-~~~-- 96 (199)
++++|++..|... ...+++| |||++++||++||+|+|||||||+++.|++++..+ ..|.+..++... ...
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~-vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDG-VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCccEEEEec-eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 6789999999653 3579999 99999999999999999999999999999999732 233443333210 000
Q ss_pred ----------ccccCC--CCCCCch-H-HHHHHHHHHH-------------HhcCceeecCC---ceeeecceecCCeee
Q psy9640 97 ----------DIIVPR--GGENCVA-I-DLIVQHIHSQ-------------LQAGVSVDMPQ---GYTYEGKRCAVSKIC 146 (199)
Q Consensus 97 ----------~~~~~~--~~~~~~~-~-~~~~~~l~~~-------------~~~~~~~~~~~---~~~~~g~~lSgGq~Q 146 (199)
.+.+.. ...|+.- . +++.+.+..+ ...-..+.+|. -++..|++|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 011111 1122211 1 2222222111 11112344543 245579999999999
Q ss_pred eeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 147 GVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 147 rvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
||.||-|+.. +.+.+.++..+.+.+.|+||||=.
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~ 215 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG 215 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999999864 777788888888999999999865
No 62
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.86 E-value=7.5e-23 Score=176.28 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=99.7
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------cccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHAD 97 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~ 97 (199)
.++++|+++.|++. +++++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++... ....
T Consensus 14 ~L~l~~l~~~~~~~--~~l~~-vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFDGK--EVISN-LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR-IMLDGQDITHVPAENRHVN 89 (375)
T ss_pred eEEEEEEEEEECCe--EEEee-eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCCCCHHHCCEE
Confidence 48999999999754 78999 99999999999999999999999999999988765443 33332211 0011
Q ss_pred cccCCC--CCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 98 IIVPRG--GENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 98 ~~~~~~--~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
+.+... ..+.. ......+.+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ll 166 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALR---MVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVL 166 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHH---HcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 111110 00000 00111111211121 1233333455678999999999999999975
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++..+.++++|.|+||+.
T Consensus 167 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ 206 (375)
T PRK09452 167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE 206 (375)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 677777777777889999999876
No 63
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=6.4e-23 Score=173.97 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=98.1
Q ss_pred Ccccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC---Ceeeeecccchhcc-----
Q psy9640 25 GRDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV---PWVTLLSMDSFYRV----- 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~---~~~~~i~~d~~~~~----- 94 (199)
-++++|+++.|+... ..+|+| |||++.+|++++|+|+||||||||+++|+|++.+ +..|.+..++....
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~-vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDR-ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEee-eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 378999999996532 369999 9999999999999999999999999999999864 23444444332110
Q ss_pred --------ccccccCCC--CCCC-chH-HHHHH---------------HHHHHHhcCceeecCC---ceeeecceecCCe
Q psy9640 95 --------HADIIVPRG--GENC-VAI-DLIVQ---------------HIHSQLQAGVSVDMPQ---GYTYEGKRCAVSK 144 (199)
Q Consensus 95 --------~~~~~~~~~--~~~~-~~~-~~~~~---------------~l~~~~~~~~~~~~~~---~~~~~g~~lSgGq 144 (199)
...+..... ..++ ... +.+.. .+.+.+ ..+.++. .++..+.+|||||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L---~~~gL~~~~~~l~~~p~~LSgGq 158 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLL---NQVGIPDPASRLDVYPHQLSGGM 158 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH---HHCCCCChHHHHhCCchhCCHHH
Confidence 011111110 0111 000 11111 111111 1223321 2345688999999
Q ss_pred eeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 145 ICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 145 ~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+|||+||||++. +.+.+.++..+.+.+.|+|+||-.
T Consensus 159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999999999975 556666666656788999999865
No 64
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.86 E-value=7e-23 Score=173.98 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=99.9
Q ss_pred ccccCcccccceeeccc--cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhcc--
Q psy9640 21 ILARGRDLEGVIKQYVN--MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRV-- 94 (199)
Q Consensus 21 ~~~~~i~l~nvs~~y~~--~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~~-- 94 (199)
..+.-++++|+++.|.. ....++++ +||++.+|++++|+|+||||||||+++|+|++.+. ..|.+..++....
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~-vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~ 86 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVND-LNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL 86 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEEee-eEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC
Confidence 33446899999999963 22469999 99999999999999999999999999999998764 2344444332110
Q ss_pred -----------ccccccCCC--CCCC-ch-HHHH---------------HHHHHHHHhcCceeecCCc---eeeecceec
Q psy9640 95 -----------HADIIVPRG--GENC-VA-IDLI---------------VQHIHSQLQAGVSVDMPQG---YTYEGKRCA 141 (199)
Q Consensus 95 -----------~~~~~~~~~--~~~~-~~-~~~~---------------~~~l~~~~~~~~~~~~~~~---~~~~g~~lS 141 (199)
...+.+... ..++ .. .+.+ .+.+.+.+. .+.++.. ++..+.+||
T Consensus 87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~---~vgL~~~~~~~~~~p~~LS 163 (330)
T PRK09473 87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLD---AVKMPEARKRMKMYPHEFS 163 (330)
T ss_pred CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCCChHHHhcCCcccCC
Confidence 011111110 1111 00 0111 111111111 2333321 234688999
Q ss_pred CCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 142 VSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 142 gGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|||+|||+||||++. +.+.+.++..+.+.+.|+|+||..
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 999999999999975 555666665655788999999865
No 65
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.86 E-value=5.9e-23 Score=201.89 Aligned_cols=153 Identities=13% Similarity=0.122 Sum_probs=112.5
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc--------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH-------- 95 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~-------- 95 (199)
+.|+++||+++|+...+++|+| +||+|++|+.+||+|+||||||||+++|++++. . .|.+..|+.....
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~-is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~-~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQD-LSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T-EGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeec-cEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C-CcEEEECCEEcccCCHHHHHh
Confidence 4699999999997655689999 999999999999999999999999999999985 3 3455444432111
Q ss_pred --cccccCCC-----------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640 96 --ADIIVPRG-----------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 96 --~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
.-+++... ..+..+.++++++++..........+|.++++ .|.+||||||||++||||++.
T Consensus 1293 ~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271 1293 AFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred ceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence 00111110 01123557788888555544555667888877 677999999999999999986
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.+++. ++|.|+|...+
T Consensus 1373 ~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~--TvI~IaHRl~t 1414 (1490)
T TIGR01271 1373 KILLLDEPSAHLDPVTLQIIRKTLKQSFSNC--TVILSEHRVEA 1414 (1490)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCC--EEEEEecCHHH
Confidence 667777777764 55999997554
No 66
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.86 E-value=1.7e-22 Score=161.66 Aligned_cols=150 Identities=13% Similarity=0.097 Sum_probs=93.4
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------------
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------------ 93 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------------ 93 (199)
++++|++++|++..++++++ +||++++|++++|+||||||||||+++|+|.+.+..+ .+..++...
T Consensus 2 l~~~~l~~~~~~~~~~il~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDN-LNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRG-KIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred eEEEEEEEEecCCCeeEEEe-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEehhhcChhHHHHHH
Confidence 67899999996533469999 9999999999999999999999999999998876543 333332110
Q ss_pred cccccccCC-CCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640 94 VHADIIVPR-GGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 94 ~~~~~~~~~-~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~- 156 (199)
......... ..... ...+.+ .+.+.+.+. ...++...+..+.+|||||+||++||||++.
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALE---KVGLEGKAHALPMQLSGGEQQRVAIARAIVHK 156 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 000111111 11100 001111 111111111 1223333344567899999999999999975
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.... +.++|.++||.+.
T Consensus 157 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~ 200 (216)
T TIGR00960 157 PPLLLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHDINL 200 (216)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence 44555554332 6778999998763
No 67
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.86 E-value=1.1e-22 Score=174.18 Aligned_cols=148 Identities=11% Similarity=0.112 Sum_probs=98.0
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADI 98 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~ 98 (199)
|+++|+++.|++. .++++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++... ....+
T Consensus 3 L~i~~l~~~~~~~--~~l~~-isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~-I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 3 IEIANIKKSFGRT--QVLND-ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH-IRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEeCCe--EEEEE-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCHHHCCEEE
Confidence 7899999999764 79999 99999999999999999999999999999988765433 33322111 00011
Q ss_pred ccCCC-CC-C------------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640 99 IVPRG-GE-N------------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 99 ~~~~~-~~-~------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
.+... .. + ........+.+.+.+. .+.++...+..+.+|||||+|||+||||+..
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P 155 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLE---MVQLAHLADRYPAQLSGGQKQRVALARALAVEP 155 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHH---HcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 11110 00 0 0011111112211121 2234444455678999999999999999975
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++....+.++|.++||.+
T Consensus 156 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ 198 (353)
T PRK10851 156 QILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE 198 (353)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 666677776666788999999876
No 68
>PLN03232 ABC transporter C family member; Provisional
Probab=99.86 E-value=1.1e-22 Score=200.26 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=105.3
Q ss_pred Ccccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee---------eecccchhcc
Q psy9640 25 GRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT---------LLSMDSFYRV 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~---------~i~~d~~~~~ 94 (199)
.++++|++|.|++. .+++|+| +||++++|+.++|+|+||||||||+++|+|.+.+..++ +++|+.....
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~-inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~ 692 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSD-INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccccc
Confidence 59999999999753 3579999 99999999999999999999999999999999876433 3333332111
Q ss_pred ccccccCCC-CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-------------
Q psy9640 95 HADIIVPRG-GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET------------- 156 (199)
Q Consensus 95 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~------------- 156 (199)
. ...++- ..++.+.+...++++..........+|.|++| .|.+|||||||||+||||++.
T Consensus 693 g--TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSa 770 (1495)
T PLN03232 693 A--TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770 (1495)
T ss_pred c--cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 0 000000 01133445555556433333445678888877 688999999999999999975
Q ss_pred --------h-HHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------M-EQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------~-~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+ ...+....++ -+.|.|+|+...
T Consensus 771 LD~~t~~~I~~~~l~~~l~~--kT~IlvTH~~~~ 802 (1495)
T PLN03232 771 LDAHVAHQVFDSCMKDELKG--KTRVLVTNQLHF 802 (1495)
T ss_pred cCHHHHHHHHHHHhhhhhcC--CEEEEEECChhh
Confidence 2 2223333333 567999997553
No 69
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.8e-22 Score=174.09 Aligned_cols=149 Identities=11% Similarity=0.129 Sum_probs=99.0
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------ccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HAD 97 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~ 97 (199)
-++++|+++.|++. +++++ ++|++++|++++|+||||||||||+++|+|+..+..+. +..++.... ...
T Consensus 19 ~l~l~~v~~~~~~~--~~l~~-vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 19 LLEIRNLTKSFDGQ--HAVDD-VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQ-IMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred eEEEEeEEEEECCE--EEEee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCCCCHHHCCEE
Confidence 49999999999754 78999 99999999999999999999999999999988765443 323322110 011
Q ss_pred cccCCC--CCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 98 IIVPRG--GENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 98 ~~~~~~--~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
+.+... ..+-. ......+.+.+.+. .+.+....+..+.+|||||+|||+||||+..
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~---~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lL 171 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLG---LVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLL 171 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 111110 00000 01111111211111 1233333355678999999999999999975
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++..+.++++|.++||++
T Consensus 172 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 211 (377)
T PRK11607 172 LLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE 211 (377)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 556666777777899999999877
No 70
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.85 E-value=2.5e-22 Score=177.14 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=105.1
Q ss_pred Ccccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC---eeeeecccchh-cccc--
Q psy9640 25 GRDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP---WVTLLSMDSFY-RVHA-- 96 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~---~~~~i~~d~~~-~~~~-- 96 (199)
-++++|++..|.... ..+++| |||++.+||++||+|+|||||||+++.|+|++... ..|.+..++.. ....
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~-vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRD-VSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecCCcceeeeec-ceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 588999999996543 359999 99999999999999999999999999999999765 23444333321 0000
Q ss_pred ----------ccccCC--CCCCC-chH-HHHHHHHH------------HHHhcCceeecCCcee--eecceecCCeeeee
Q psy9640 97 ----------DIIVPR--GGENC-VAI-DLIVQHIH------------SQLQAGVSVDMPQGYT--YEGKRCAVSKICGV 148 (199)
Q Consensus 97 ----------~~~~~~--~~~~~-~~~-~~~~~~l~------------~~~~~~~~~~~~~~~~--~~g~~lSgGq~Qrv 148 (199)
.+.+.+ ...|+ ... +++.+.+. .....-..+.+|+... ..|++|||||+|||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 011111 11232 111 12211110 0111112455655422 37899999999999
Q ss_pred eEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 149 SILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 149 aiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
.||+|+.. +.+.++++..+.+++.|+|+||.+
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~ 216 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG 216 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH
Confidence 99999964 788888999999999999999976
No 71
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.85 E-value=2.6e-22 Score=180.85 Aligned_cols=153 Identities=13% Similarity=0.123 Sum_probs=96.3
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------- 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------- 94 (199)
..++++||+|+|++. .++|++ +||++++|++++|+|+||||||||+++|+|.+.|..+. +..|+....
T Consensus 321 ~~i~~~~v~f~y~~~-~~~l~~-i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~-i~~~g~~~~~~~~~~~~~ 397 (547)
T PRK10522 321 QTLELRNVTFAYQDN-GFSVGP-INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE-ILLDGKPVTAEQPEDYRK 397 (547)
T ss_pred ceEEEEEEEEEeCCC-CeEEec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEECCCCCHHHHhh
Confidence 369999999999753 369999 99999999999999999999999999999988765433 333322110
Q ss_pred ccc-cccCC-----C-CCC--CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------
Q psy9640 95 HAD-IIVPR-----G-GEN--CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------- 156 (199)
Q Consensus 95 ~~~-~~~~~-----~-~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------- 156 (199)
... ..... . ..| ..+.+.+.+.+ +..........+.+. ..|.+|||||+||++||||++.
T Consensus 398 ~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~-~~~~l~~~~~~~~~~-~~G~~LSgGq~qRl~lARal~~~~~ililDE 475 (547)
T PRK10522 398 LFSAVFTDFHLFDQLLGPEGKPANPALVEKWL-ERLKMAHKLELEDGR-ISNLKLSKGQKKRLALLLALAEERDILLLDE 475 (547)
T ss_pred heEEEecChhHHHHhhccccCchHHHHHHHHH-HHcCCchhhhccccC-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 000 00000 0 111 12223333334 222222222222221 1367999999999999999975
Q ss_pred ------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.+.....++|.|+|+..+
T Consensus 476 ~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~ 512 (547)
T PRK10522 476 WAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY 512 (547)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH
Confidence 3334444433235678999998653
No 72
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.2e-22 Score=161.38 Aligned_cols=148 Identities=14% Similarity=0.172 Sum_probs=92.7
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------------
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------------ 93 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------------ 93 (199)
++++|++++|++. +++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++...
T Consensus 1 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~~ 76 (235)
T cd03261 1 IELRGLTKSFGGR--TVLKG-VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE-VLIDGEDISGLSEAELYRLR 76 (235)
T ss_pred CeEEEEEEEECCE--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccChhhHHHHh
Confidence 4689999999754 79999 99999999999999999999999999999988765443 33332110
Q ss_pred cccccccCC-CCCCCch-HHH---------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640 94 VHADIIVPR-GGENCVA-IDL---------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 94 ~~~~~~~~~-~~~~~~~-~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~ 156 (199)
......... ....... .+. ..+.+.+.+. ...+....+..+.+|||||+|||+||||++.
T Consensus 77 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~ 153 (235)
T cd03261 77 RRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLE---AVGLRGAEDLYPAELSGGMKKRVALARALAL 153 (235)
T ss_pred cceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHH---HcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 000010000 0000000 011 1111111111 1233333344667899999999999999975
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+...+.+.++|.++||.+
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 445555544333678899999876
No 73
>PLN03130 ABC transporter C family member; Provisional
Probab=99.85 E-value=3.2e-22 Score=197.55 Aligned_cols=151 Identities=13% Similarity=0.111 Sum_probs=104.9
Q ss_pred Ccccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe-e--------eeecccchhcc
Q psy9640 25 GRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW-V--------TLLSMDSFYRV 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~-~--------~~i~~d~~~~~ 94 (199)
.++++|++|.|+.. .+++|+| +||++++|++++|+||||||||||++.|+|.+.+.. + ++++|+.....
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~-inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lfn 692 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSN-INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFN 692 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeec-eeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCC
Confidence 59999999999753 3579999 999999999999999999999999999999998765 2 22333322111
Q ss_pred ccccccCCC-CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-------------
Q psy9640 95 HADIIVPRG-GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET------------- 156 (199)
Q Consensus 95 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~------------- 156 (199)
. ...++- ...+.+.+...++++..........+|.|++| .|.+|||||||||+||||++.
T Consensus 693 g--TIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSA 770 (1622)
T PLN03130 693 A--TVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770 (1622)
T ss_pred C--CHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 0 000000 11233445555666444444456678988887 688999999999999999975
Q ss_pred --------h-HHHHHhhccccceeEEEEEeCCC
Q psy9640 157 --------M-EQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 --------~-~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+ ...+....+ +-+.|.|+|+..
T Consensus 771 LD~~~~~~I~~~~l~~~l~--~kTvIlVTH~l~ 801 (1622)
T PLN03130 771 LDAHVGRQVFDKCIKDELR--GKTRVLVTNQLH 801 (1622)
T ss_pred cCHHHHHHHHHHHhhHHhc--CCEEEEEECCHh
Confidence 2 222333333 356799999754
No 74
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.8e-22 Score=171.32 Aligned_cols=151 Identities=13% Similarity=0.109 Sum_probs=98.4
Q ss_pred Ccccccceeecccc--------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---
Q psy9640 25 GRDLEGVIKQYVNM--------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--- 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~~--------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--- 93 (199)
-|+++|+++.|+.. ...++++ |||++.+|++++|+|+||||||||+++|+|++.+.. |.+..++...
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~-vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~-G~i~~~g~~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDG-VSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTG-GELYYQGQDLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEee-eEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-cEEEECCEEcCcC
Confidence 48899999999631 2479999 999999999999999999999999999999887653 3333333211
Q ss_pred ---------cccccccCCC--CCCC-chH-HHH---------------HHHHHHHHhcCceeecC-CceeeecceecCCe
Q psy9640 94 ---------VHADIIVPRG--GENC-VAI-DLI---------------VQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSK 144 (199)
Q Consensus 94 ---------~~~~~~~~~~--~~~~-~~~-~~~---------------~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq 144 (199)
....+.+... ..++ ... +.+ .+.+.+.+. .+.++ ..++..+.+|||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMA---KVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHH---HCCCChHHhcCCCccCCHHH
Confidence 0011111110 0111 000 111 111111111 22333 24466788999999
Q ss_pred eeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 145 ICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 145 ~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+|||+||||++. +.+.|.++..+.+.+.|+|+||-.
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 216 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS 216 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 999999999975 556666766666788999999866
No 75
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.85 E-value=3.1e-22 Score=162.27 Aligned_cols=152 Identities=18% Similarity=0.188 Sum_probs=92.6
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------ccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VHA 96 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~~ 96 (199)
++++|+++.|+...++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++... ...
T Consensus 1 i~~~~l~~~~~~~~~~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i 78 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDN-ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR-VLVDGHDLALADPAWLRRQV 78 (237)
T ss_pred CEEEEEEEecCCCCccceec-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCeehHhcCHHHHhhcE
Confidence 46899999996533579999 99999999999999999999999999999998665432 22222110 000
Q ss_pred ccccCC-CCCC------------CchHHHHHHHHHHHHhcCceeecCCc----eeeecceecCCeeeeeeEEeccch---
Q psy9640 97 DIIVPR-GGEN------------CVAIDLIVQHIHSQLQAGVSVDMPQG----YTYEGKRCAVSKICGVSILRAGET--- 156 (199)
Q Consensus 97 ~~~~~~-~~~~------------~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~g~~lSgGq~QrvaiaRA~~~--- 156 (199)
...... ...+ ......+...+...........+|.+ .+..+.+|||||+|||+||||++.
T Consensus 79 ~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 79 GVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 000000 0000 00111111111000000011112222 233567999999999999999975
Q ss_pred ------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.++.. +.+.|.++||.+.
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~ 199 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLST 199 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHH
Confidence 5556666543 5778999998764
No 76
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.1e-22 Score=171.02 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=96.4
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------cccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHAD 97 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~ 97 (199)
.++++|++++|++. .+|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++... ....
T Consensus 3 ~l~i~~l~~~~~~~--~vl~~-vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~-I~~~g~~i~~~~~~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGDV--VISKD-INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD-LFIGEKRMNDVPPAERGVG 78 (369)
T ss_pred EEEEEEEEEEeCCe--EEEee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCCCCHhHCCEE
Confidence 47899999999754 69999 99999999999999999999999999999988765443 32222110 0001
Q ss_pred cccCC-CCC-CCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 98 IIVPR-GGE-NCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 98 ~~~~~-~~~-~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
+.... ... +.. ......+.+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~---~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lL 155 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAE---VLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHH---HcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 11111 000 000 00111111111111 1233333345677999999999999999975
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.....+.++|.++||.+
T Consensus 156 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 555566665555788899999875
No 77
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.84 E-value=4.5e-22 Score=195.02 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=105.7
Q ss_pred Ccccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh---------cc
Q psy9640 25 GRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY---------RV 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~---------~~ 94 (199)
.|+++||+|+|++. ..++|++ +||++++|++++|+||||||||||+++|+|++.|..+.+...|+.. +.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~-isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~ 460 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKD-LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRS 460 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceecc-ceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHH
Confidence 69999999999854 2479999 9999999999999999999999999999999987654433212110 00
Q ss_pred cccc-c---------------cCCCC------------------------------------------------------
Q psy9640 95 HADI-I---------------VPRGG------------------------------------------------------ 104 (199)
Q Consensus 95 ~~~~-~---------------~~~~~------------------------------------------------------ 104 (199)
.... . .....
T Consensus 461 ~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 461 KIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred hccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 0000 0 00000
Q ss_pred CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch---------------------hHH
Q psy9640 105 ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET---------------------MEQ 159 (199)
Q Consensus 105 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~---------------------~~~ 159 (199)
......+.+.++++......+...+|.+++| .|.+|||||||||+||||++. +.+
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~ 620 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK 620 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 0011224455555444334445578888876 578999999999999999976 444
Q ss_pred HHHhhccccceeEEEEEeCCCC
Q psy9640 160 AVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 160 ~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
.+.+....-+.++|.|+|+..+
T Consensus 621 ~L~~~~~~~g~TvIiIsHrls~ 642 (1466)
T PTZ00265 621 TINNLKGNENRITIIIAHRLST 642 (1466)
T ss_pred HHHHHhhcCCCEEEEEeCCHHH
Confidence 4444433235678999998764
No 78
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=6e-22 Score=158.92 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=94.9
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------cc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VH 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~ 95 (199)
.++++|++++|+...++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++... ..
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~-i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKN-ISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS-ILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred cEEEEEEEEecCCCCcccccc-eEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCE-EEECCEEhHhCCHHHHhhh
Confidence 478999999997543579999 99999999999999999999999999999987665433 32222110 00
Q ss_pred cccccCC-CC-----------CCCchHHHHHHHHHHHHhcCceeecCCcee----eecceecCCeeeeeeEEeccch---
Q psy9640 96 ADIIVPR-GG-----------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYT----YEGKRCAVSKICGVSILRAGET--- 156 (199)
Q Consensus 96 ~~~~~~~-~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~g~~lSgGq~QrvaiaRA~~~--- 156 (199)
....... .. ......+.+.+.+...........+|.++. ..+..|||||+||++||||++.
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 0000000 00 001111222222211111111112233332 2567899999999999999975
Q ss_pred ------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 ------------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+.+.+.+... +.++|+++|+.+.+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~ 201 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTI 201 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH
Confidence 4455555543 36789999987643
No 79
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.84 E-value=4e-22 Score=169.34 Aligned_cols=151 Identities=14% Similarity=0.126 Sum_probs=97.6
Q ss_pred Ccccccceeecccc-----------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc
Q psy9640 25 GRDLEGVIKQYVNM-----------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~~-----------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~ 93 (199)
-++++||++.|+.. ...++++ +||++++|++++|+|+||||||||+++|+|++.+..+ .+..++...
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~-vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G-~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDG-VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDG-EVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEee-EEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCc-EEEECCEEC
Confidence 48999999999631 2468999 9999999999999999999999999999998876543 333332211
Q ss_pred c------------ccccccCCC--CCCC-ch-HHHH----------------HHHHHHHHhcCceeecC-Cceeeeccee
Q psy9640 94 V------------HADIIVPRG--GENC-VA-IDLI----------------VQHIHSQLQAGVSVDMP-QGYTYEGKRC 140 (199)
Q Consensus 94 ~------------~~~~~~~~~--~~~~-~~-~~~~----------------~~~l~~~~~~~~~~~~~-~~~~~~g~~l 140 (199)
. ...+..... ..++ .. .+.+ .+.+.+.+ ..+.++ ...+..+.+|
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l---~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMM---LKVGLLPNLINRYPHEF 162 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH---HHcCCChHHhcCCcccC
Confidence 0 011111110 0111 00 1111 11111111 122332 2345678899
Q ss_pred cCCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 141 AVSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 141 SgGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
||||+|||+||||++. +.+.+.++....+.+.|+|+||.+
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~ 223 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA 223 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 9999999999999975 555666665555788899999865
No 80
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.84 E-value=4.2e-22 Score=165.28 Aligned_cols=152 Identities=13% Similarity=0.088 Sum_probs=100.0
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~ 95 (199)
.|+++|++++|+....++|++ +||+|++|++++|+|+||||||||+++|+|++. .. |.+..++.... .
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~-isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~-G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLEN-ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TE-GDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred eEEEEEEEEEeCCCCCcceec-eEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CC-cEEEECCEEhhhCCHHHHhhh
Confidence 578999999996544579999 999999999999999999999999999999986 33 44444442110 0
Q ss_pred cccc-cCCCC-----------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch---
Q psy9640 96 ADII-VPRGG-----------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET--- 156 (199)
Q Consensus 96 ~~~~-~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~--- 156 (199)
..+. ..... ......+.+.+.+.........-..|.++++ .|..|||||+||++||||++.
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 0010 00000 0112223444444222212223334554444 567899999999999999976
Q ss_pred ------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+... ..+.|+|+|+.+.
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~--~~tii~isH~~~~ 199 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFA--DCTVILSEHRIEA 199 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEECCHHH
Confidence 5566665543 4667999998764
No 81
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.84 E-value=8e-22 Score=157.91 Aligned_cols=151 Identities=14% Similarity=0.069 Sum_probs=93.5
Q ss_pred cccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640 26 RDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------- 93 (199)
Q Consensus 26 i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------- 93 (199)
++++|+++.|++.. ++++++ +||++++|++++|+||||||||||+++|+|.+.+..+ .+..++...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~-~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKG-VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG-EVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCCcceeEEee-eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCce-eEEECCEehhhcchhHHHH
Confidence 46899999997521 479999 9999999999999999999999999999998876543 333332110
Q ss_pred ---ccccc-ccCCCCCCCchH-HH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640 94 ---VHADI-IVPRGGENCVAI-DL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG 154 (199)
Q Consensus 94 ---~~~~~-~~~~~~~~~~~~-~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~ 154 (199)
..... ............ +. ..+.+.+.+. ...+....+..+.+|||||+||++||||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLE---RVGLGDRLNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHH---HcCCchhhhcChhhcCHHHHHHHHHHHHH
Confidence 00011 001011111010 10 0011111111 12232223446778999999999999999
Q ss_pred ch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+. +.+.+.+....-+.++|+++||.+.
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 75 4444555443236788999998764
No 82
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.84 E-value=7.6e-22 Score=158.23 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=50.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
.++++|+++.|++..+.++++ +||++++|++++|+||||||||||+++|+|...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~-i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~ 58 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDN-VSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS 58 (220)
T ss_pred eEEEEEEEEEcCCCCcccccc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 478999999997533479999 999999999999999999999999999999876543
No 83
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=8.5e-22 Score=168.17 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=95.4
Q ss_pred cccccceeeccc--cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640 26 RDLEGVIKQYVN--MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------- 93 (199)
Q Consensus 26 i~l~nvs~~y~~--~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------- 93 (199)
++++|++++|+. ..+++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~-vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNN-VSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR-VLVDGQDLTALSEKELRK 79 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEe-eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCcCCHHHHHH
Confidence 678999999972 23479999 99999999999999999999999999999988765443 33332110
Q ss_pred --cccccccCC-CCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640 94 --VHADIIVPR-GGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE 155 (199)
Q Consensus 94 --~~~~~~~~~-~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~ 155 (199)
......... ..... ...+.+ .+.+.+.+. .+.++...+..+.+|||||+||++||||++
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLE---LVGLSDKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 011111111 11110 001111 111111111 123333334567799999999999999997
Q ss_pred h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
. +.+.+.+.....+.++|+++||.+
T Consensus 157 ~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 157 SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD 202 (343)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 6 555555555544678899999765
No 84
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=8e-22 Score=167.52 Aligned_cols=152 Identities=14% Similarity=0.084 Sum_probs=97.1
Q ss_pred Ccccccceeeccc--cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC---Ceeeeecccchhcc-----
Q psy9640 25 GRDLEGVIKQYVN--MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV---PWVTLLSMDSFYRV----- 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~--~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~---~~~~~i~~d~~~~~----- 94 (199)
-++++|+++.|+. ....++++ +||+|.+|++++|+|+||||||||+++|+|++.+ +..|.+..++....
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~-vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDR-VSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEee-eEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 3789999999953 22469999 9999999999999999999999999999999863 23444444332110
Q ss_pred --------ccccccCCC--CCCCc-h-HHHHHH--------------------HHHHHHhcCceeecCC---ceeeecce
Q psy9640 95 --------HADIIVPRG--GENCV-A-IDLIVQ--------------------HIHSQLQAGVSVDMPQ---GYTYEGKR 139 (199)
Q Consensus 95 --------~~~~~~~~~--~~~~~-~-~~~~~~--------------------~l~~~~~~~~~~~~~~---~~~~~g~~ 139 (199)
...+.+... ..++. . .+.+.. .+.+.+ ..+.+.. .++..+.+
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~~~gL~~~~~~~~~~p~~ 158 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELL---HRVGIKDHKDAMRSFPYE 158 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHH---HHCCCCChHHHHhCCchh
Confidence 011111110 01110 0 111111 111111 1123321 23456789
Q ss_pred ecCCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 140 CAVSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 140 lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|||||+|||+||||++. +.+.+.++....+.+.|+|+||-+
T Consensus 159 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~ 220 (330)
T PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ 220 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 99999999999999976 666666666556788999999865
No 85
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1e-21 Score=157.58 Aligned_cols=149 Identities=13% Similarity=0.137 Sum_probs=92.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------ccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------HAD 97 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------~~~ 97 (199)
++++|++++|++. +++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+. +..++.... ...
T Consensus 1 i~~~~~~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGDF--EAVRG-VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR-ATVAGHDVVREPREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECCE--Eeeec-eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEecCcChHHHhhcEE
Confidence 5789999999764 79999 99999999999999999999999999999988665443 333321100 001
Q ss_pred cccCC-CCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 98 IIVPR-GGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 98 ~~~~~-~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
..... ..... ...+.+ .+.+.+.+. ...++...+..+.+|||||+||++||||++.
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ll 153 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLD---FVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVL 153 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 11111 11100 001111 011111111 1223322344567899999999999999975
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+....-+.++|.++||.+.
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~ 194 (220)
T cd03265 154 FLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE 194 (220)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 4444444444335788999998763
No 86
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=9.9e-22 Score=155.99 Aligned_cols=154 Identities=12% Similarity=0.039 Sum_probs=91.7
Q ss_pred cccccceeeccccc---cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee--------eeecccchhcc
Q psy9640 26 RDLEGVIKQYVNMV---KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV--------TLLSMDSFYRV 94 (199)
Q Consensus 26 i~l~nvs~~y~~~~---~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~--------~~i~~d~~~~~ 94 (199)
++++||+++|.+.. ++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+ ++++++.....
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~-~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKD-INLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCccccceeee-eeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhcc
Confidence 56899999997542 369999 9999999999999999999999999999998876543 33333322111
Q ss_pred ccccccCCCCCCCchHHHHHHHHHHHHhcCceeecCCce----eeecceecCCeeeeeeEEeccch--------------
Q psy9640 95 HADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGY----TYEGKRCAVSKICGVSILRAGET-------------- 156 (199)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~g~~lSgGq~QrvaiaRA~~~-------------- 156 (199)
..-....... .....+...+.+............|.++ ...+.+||+||+||++||||+..
T Consensus 80 ~t~~enl~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~L 158 (204)
T cd03250 80 GTIRENILFG-KPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAV 158 (204)
T ss_pred CcHHHHhccC-CCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 1000000000 0111112222221100111111222222 23567899999999999999975
Q ss_pred -------hHHHH-HhhccccceeEEEEEeCCCCC
Q psy9640 157 -------MEQAV-HDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 -------~~~~l-~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+.+.+ .+.... +.+.|+++|+.+..
T Consensus 159 D~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~ 191 (204)
T cd03250 159 DAHVGRHIFENCILGLLLN-NKTRILVTHQLQLL 191 (204)
T ss_pred CHHHHHHHHHHHHHHhccC-CCEEEEEeCCHHHH
Confidence 22222 222233 57889999987643
No 87
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=6.9e-22 Score=158.63 Aligned_cols=151 Identities=15% Similarity=0.081 Sum_probs=92.7
Q ss_pred cccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----ccccc-
Q psy9640 26 RDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----VHADI- 98 (199)
Q Consensus 26 i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----~~~~~- 98 (199)
++++|+++.|++.. ++++++ +||++++|++++|+||||||||||+++|+|.+.+..+ .+..++... .....
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~-vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~i~~v 78 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALED-ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG-EVLVDGEPVTGPGPDRGYV 78 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEec-eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECccccCcEEEE
Confidence 46899999997511 379999 9999999999999999999999999999998866543 333332110 00011
Q ss_pred ccCCCCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-------
Q psy9640 99 IVPRGGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------- 156 (199)
Q Consensus 99 ~~~~~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------- 156 (199)
........... .+.+ .+.+...+. ...+....+..+.+|||||+||++||||++.
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllL 155 (220)
T cd03293 79 FQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLE---LVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155 (220)
T ss_pred ecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 00000000000 0110 111111111 1122222334567899999999999999976
Q ss_pred --------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+....-+.++|.++||.+.
T Consensus 156 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 194 (220)
T cd03293 156 DEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE 194 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 4455555444335678999998763
No 88
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.84 E-value=1e-21 Score=156.05 Aligned_cols=148 Identities=10% Similarity=0.080 Sum_probs=90.3
Q ss_pred ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------ccccccc
Q psy9640 27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------VHADIIV 100 (199)
Q Consensus 27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------~~~~~~~ 100 (199)
+++|++++|++. ++++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++... .......
T Consensus 1 ~~~~l~~~~~~~-~~~l~~-v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~i~~~~ 77 (205)
T cd03226 1 RIENISFSYKKG-TEILDD-LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGS-ILLNGKPIKAKERRKSIGYVM 77 (205)
T ss_pred CcccEEEEeCCc-Cceeee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEhhhHHhhcceEEEe
Confidence 478999999752 379999 99999999999999999999999999999988765433 32222110 0000100
Q ss_pred CCC---CCCCchHHHHH----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------
Q psy9640 101 PRG---GENCVAIDLIV----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----------- 156 (199)
Q Consensus 101 ~~~---~~~~~~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----------- 156 (199)
... .......+.+. ..+.+.+. ...+....+..+..|||||+||++||||+..
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 154 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLK---DLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHH---HcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 000 00000000000 01111111 1122222344567899999999999999975
Q ss_pred ----------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ----------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ----------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.... +.+.|.++||.+.
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~ 188 (205)
T cd03226 155 SGLDYKNMERVGELIRELAAQ-GKAVIVITHDYEF 188 (205)
T ss_pred ccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence 44444444322 6778999998753
No 89
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=6.2e-22 Score=165.19 Aligned_cols=150 Identities=13% Similarity=0.138 Sum_probs=94.5
Q ss_pred cccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640 26 RDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------- 94 (199)
Q Consensus 26 i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------- 94 (199)
++++||++.|+.. .+++|++ +||++.+|++++|+|+||||||||+++|+|++.+..+.+ ..++....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~-vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDN-VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI-IIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEECCCCCccccceeee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-EECCEECCCcCccHHH
Confidence 6799999999642 2479999 999999999999999999999999999999887654433 22221110
Q ss_pred ---ccccccCC---CCCCCc--------------hHHHHHHHHHHHHhcCceeecC--CceeeecceecCCeeeeeeEEe
Q psy9640 95 ---HADIIVPR---GGENCV--------------AIDLIVQHIHSQLQAGVSVDMP--QGYTYEGKRCAVSKICGVSILR 152 (199)
Q Consensus 95 ---~~~~~~~~---~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~--~~~~~~g~~lSgGq~QrvaiaR 152 (199)
........ ...... ..+...+.+.+.+. .+.++ ...+..+.+|||||+||++|||
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMN---IVGLDYEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHH---HcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence 00111110 000000 01111111111111 12332 2234567799999999999999
Q ss_pred ccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|+.. +.+.+.++....+.+.|.++||..
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 206 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME 206 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9975 555555555544678899999855
No 90
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=1.9e-21 Score=145.53 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=100.5
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhcc-------cc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRV-------HA 96 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~~-------~~ 96 (199)
+.++||+..-+++ -.|.+ +|++|.+|+++.|+||||||||||+..+.|.+.+. ..|.+..++.... ..
T Consensus 3 l~l~nvsl~l~g~--cLLa~-~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~ 79 (213)
T COG4136 3 LCLKNVSLRLPGS--CLLAN-VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI 79 (213)
T ss_pred eeeeeeeecCCCc--eEEEe-eeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence 5678999888776 78899 99999999999999999999999999999988653 2233322222110 00
Q ss_pred cccc------C--CCCCC-----CchH--HHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 97 DIIV------P--RGGEN-----CVAI--DLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 97 ~~~~------~--~~~~~-----~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
++.+ + .-..| +.+. +.-.+.....+. .+.+...++..|.+||||||-||++.|++++
T Consensus 80 GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~---~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~l 156 (213)
T COG4136 80 GILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALE---RSGLDGAFHQDPATLSGGQRARVALLRALLAQPKAL 156 (213)
T ss_pred eeeecccccccccccccceEEecCcccccHHHHhhHHHHHH---HhccchhhhcChhhcCcchHHHHHHHHHHHhCccee
Confidence 1100 0 00111 1111 111111111111 2233334455677999999999999999986
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCCCCCchh
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKATDEPEL 186 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 186 (199)
+.+.+-+-...++|-+|.|+||.+.+++-.
T Consensus 157 LLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvpags 202 (213)
T COG4136 157 LLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGS 202 (213)
T ss_pred eeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCC
Confidence 444555566688999999999999887543
No 91
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.83 E-value=1.3e-21 Score=160.84 Aligned_cols=151 Identities=13% Similarity=0.084 Sum_probs=95.1
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----ccccccc
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----RVHADII 99 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----~~~~~~~ 99 (199)
..|+++|++++|++. ++|++ +||++.+|++++|+|+||||||||+++|+|.+.+..+.+ ..++.. .......
T Consensus 11 ~~l~i~~l~~~~~~~--~il~~-isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~~i~~v 86 (257)
T PRK11247 11 TPLLLNAVSKRYGER--TVLNQ-LDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAPLAEAREDTRLM 86 (257)
T ss_pred CcEEEEEEEEEECCc--ceeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEHHHhhCceEEE
Confidence 459999999999754 79999 999999999999999999999999999999887654433 222211 0000111
Q ss_pred cCC-CCCC-CchHHHH--------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-------------
Q psy9640 100 VPR-GGEN-CVAIDLI--------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------------- 156 (199)
Q Consensus 100 ~~~-~~~~-~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------------- 156 (199)
... .... ....+.+ ...+...+. ...+....+..+.+|||||+||++||||++.
T Consensus 87 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~ 163 (257)
T PRK11247 87 FQDARLLPWKKVIDNVGLGLKGQWRDAALQALA---AVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGA 163 (257)
T ss_pred ecCccCCCCCcHHHHHHhcccchHHHHHHHHHH---HcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 111 0100 0000110 011111111 1222223344567899999999999999976
Q ss_pred --------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+....-+.++|.++||.+.
T Consensus 164 LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~ 196 (257)
T PRK11247 164 LDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE 196 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 4444555444335778999998763
No 92
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.3e-21 Score=156.24 Aligned_cols=149 Identities=14% Similarity=0.142 Sum_probs=91.3
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------cccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HADI 98 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~~ 98 (199)
++++|+++.|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++.... ....
T Consensus 1 l~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGSV--RALDD-LSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE-ILIDGRDVTGVPPERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCCe--eeecc-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEcCcCchhhccEEE
Confidence 4689999999764 79999 99999999999999999999999999999988665433 333321100 0000
Q ss_pred -ccCCCCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640 99 -IVPRGGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------ 156 (199)
Q Consensus 99 -~~~~~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------ 156 (199)
......... ...+.+ .+.+.+.+. ...+....+..+.+|||||+||++||||++.
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ll 153 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLE---LVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL 153 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHH---HcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 000000000 000110 011111111 1223222344567899999999999999975
Q ss_pred ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+....-+.++|.++||.+.
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 193 (213)
T cd03259 154 LDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEE 193 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 4444444433225678999998753
No 93
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.83 E-value=1.5e-21 Score=156.59 Aligned_cols=151 Identities=13% Similarity=0.072 Sum_probs=93.2
Q ss_pred cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640 26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------- 93 (199)
Q Consensus 26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------- 93 (199)
++++||++.|++. ..+++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++...
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~-isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKG-VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE-VLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCCcceEeEee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEhhhcCHhHHHH
Confidence 5789999999642 1369999 99999999999999999999999999999988765433 33322110
Q ss_pred ---cccccccCC-CCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640 94 ---VHADIIVPR-GGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG 154 (199)
Q Consensus 94 ---~~~~~~~~~-~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~ 154 (199)
......... ....... .+.+ .+.+.+.+. ...++...+..+.+|||||+||++||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~laral 156 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLE---KVGLEHRINHRPSELSGGERQRVAIARAL 156 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 001111111 1111101 1111 011111111 12233333445678999999999999999
Q ss_pred ch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+. +.+.+.+...+-+.+.|.++||.+.
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~ 204 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL 204 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 75 4444544444335678999998753
No 94
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.83 E-value=1.5e-21 Score=157.27 Aligned_cols=65 Identities=18% Similarity=0.111 Sum_probs=55.4
Q ss_pred cccccccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 18 KRDILARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 18 ~~~~~~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
..+...+.++++|++++|++. ..+++++ +|+++++|++++|+||||||||||+++|+|.+.+..+
T Consensus 4 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 69 (226)
T cd03248 4 APDHLKGIVKFQNVTFAYPTRPDTLVLQD-VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG 69 (226)
T ss_pred CCCCcCceEEEEEEEEEeCCCCCCccccc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence 345566679999999999753 2369999 9999999999999999999999999999998866543
No 95
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.8e-21 Score=158.05 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=49.3
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++||+++|++. ++++++ +||++.+|++++|+||||||||||+++|+|.+.+..+
T Consensus 1 l~~~~l~~~~~~~-~~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 56 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKD-VSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSG 56 (241)
T ss_pred CEEeeEEEecCCc-cEEEec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 4689999999751 379999 9999999999999999999999999999998866543
No 96
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.83 E-value=1.7e-21 Score=158.47 Aligned_cols=56 Identities=25% Similarity=0.239 Sum_probs=49.2
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++|+++.|+.. ++++++ +||++.+|++++|+||||||||||+++|+|.+.+..+
T Consensus 2 l~~~~l~~~~~~~-~~il~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 57 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKN-INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSG 57 (243)
T ss_pred eEEEeeeeecCCC-cceeec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence 5789999999722 379999 9999999999999999999999999999998866543
No 97
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.83 E-value=1.4e-21 Score=156.69 Aligned_cols=149 Identities=14% Similarity=0.109 Sum_probs=92.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHAD 97 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~~ 97 (199)
++++||++.|++..+++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++... ....
T Consensus 1 l~~~~l~~~~~~~~~~il~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDD-LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT-AYINGYSIRTDRKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCCCceeecc-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEecccchHHHhhhEE
Confidence 56899999997522479999 99999999999999999999999999999988765443 32222110 0001
Q ss_pred cccCC-CCCCCch-HH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 98 IIVPR-GGENCVA-ID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 98 ~~~~~-~~~~~~~-~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
..... ....... .+ ...+.+.+.+. ...++...+....+|||||+||++||||++.
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 155 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLR---VLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVL 155 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 11111 0010000 00 00111111111 1233333344567899999999999999975
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+...+ .+.|.++||.+.
T Consensus 156 llDEP~~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~ 194 (220)
T cd03263 156 LLDEPTSGLDPASRRAIWDLILEVRKG--RSIILTTHSMDE 194 (220)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHhcC--CEEEEEcCCHHH
Confidence 55555555443 678999998763
No 98
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.83 E-value=2.4e-21 Score=154.42 Aligned_cols=149 Identities=12% Similarity=0.066 Sum_probs=91.6
Q ss_pred ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------cccc
Q psy9640 27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VHAD 97 (199)
Q Consensus 27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~~~ 97 (199)
+++|++++|++..++++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++... ....
T Consensus 1 ~~~~l~~~~~~~~~~il~~-vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~ 78 (211)
T cd03225 1 ELKNLSFSYPDGARPALDD-ISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE-VLVDGKDLTKLSLKELRRKVG 78 (211)
T ss_pred CceeEEEecCCCCeeeecc-eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEEcccCCHHHHHhhce
Confidence 4789999997622379999 99999999999999999999999999999988765433 33322110 0001
Q ss_pred c-ccCCC--CCCCchHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640 98 I-IVPRG--GENCVAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---- 156 (199)
Q Consensus 98 ~-~~~~~--~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---- 156 (199)
. ..... .......+.+ ...+.+.+. ...+....+..+.+|||||+||++||||++.
T Consensus 79 ~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 155 (211)
T cd03225 79 LVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALE---LVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155 (211)
T ss_pred EEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 1 11100 0000000111 111111111 1122222344567899999999999999975
Q ss_pred -----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -----------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.... +.++|+++||.+.
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~ 196 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDL 196 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH
Confidence 44445444433 5788999998763
No 99
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.83 E-value=1.8e-21 Score=155.38 Aligned_cols=149 Identities=13% Similarity=0.076 Sum_probs=92.2
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------------
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------------ 93 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------------ 93 (199)
++++|++++|++. ++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...
T Consensus 2 l~~~~l~~~~~~~-~~il~~-is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHD-VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQ-VRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred EEEEeeeEEeCCC-ceeecc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcccCCHHHHHHHH
Confidence 5789999999522 379999 99999999999999999999999999999988665433 33332110
Q ss_pred ccccccc-CCCCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640 94 VHADIIV-PRGGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 94 ~~~~~~~-~~~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~- 156 (199)
....... ....... ...+.+ .+.+.+.+. ...+....+..+.+|||||+||++||||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALR---QVGLEHKADAFPEQLSGGEQQRVAIARAIVNS 155 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 0001111 1010100 000111 111111111 1122222344567899999999999999975
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.... +.+.|.++||.+.
T Consensus 156 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~ 199 (214)
T TIGR02673 156 PPLLLADEPTGNLDPDLSERILDLLKRLNKR-GTTVIVATHDLSL 199 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH
Confidence 45555554332 6788999998764
No 100
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.83 E-value=1.9e-21 Score=155.29 Aligned_cols=147 Identities=12% Similarity=0.083 Sum_probs=90.0
Q ss_pred ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----cccccc-ccC
Q psy9640 27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----RVHADI-IVP 101 (199)
Q Consensus 27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----~~~~~~-~~~ 101 (199)
+++|++++|++. +++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++.. ...... ...
T Consensus 1 ~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~i~~v~q~ 76 (213)
T cd03235 1 EVEDLTVSYGGH--PVLED-VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGS-IRVFGKPLEKERKRIGYVPQR 76 (213)
T ss_pred CcccceeEECCE--Eeeec-ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCE-EEECCccHHHHHhheEEeccc
Confidence 478999999754 79999 99999999999999999999999999999988765433 3222210 000000 000
Q ss_pred CCC---CCCchH------------------HHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640 102 RGG---ENCVAI------------------DLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---- 156 (199)
Q Consensus 102 ~~~---~~~~~~------------------~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---- 156 (199)
... ...... +...+.+...+. ...++...+..+.+|||||+||++||||+..
T Consensus 77 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 77 RSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALE---RVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred cccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHH---HcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 000 000000 011111111111 1122222234567899999999999999975
Q ss_pred -----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -----------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+... -+.++|.++||.+.
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~ 194 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGL 194 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH
Confidence 4445554433 25778999998764
No 101
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.83 E-value=1.8e-21 Score=178.65 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=102.4
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe----------eeeecccchhc
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW----------VTLLSMDSFYR 93 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~----------~~~i~~d~~~~ 93 (199)
..++++||++.|++. ++++++ +||++++|++++|+||||||||||+++|+|++.+.. +++++++.+..
T Consensus 450 ~~i~~~nv~~~~~~~-~~il~~-isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~ 527 (659)
T TIGR00954 450 NGIKFENIPLVTPNG-DVLIES-LSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMT 527 (659)
T ss_pred CeEEEEeeEEECCCC-Ceeeec-ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCC
Confidence 359999999999643 379999 999999999999999999999999999999875532 33344443211
Q ss_pred ccc---ccccCCCC----CCCchHHHHHHHHHHHHhcCceeecCCceee---ecceecCCeeeeeeEEeccch-------
Q psy9640 94 VHA---DIIVPRGG----ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY---EGKRCAVSKICGVSILRAGET------- 156 (199)
Q Consensus 94 ~~~---~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~g~~lSgGq~QrvaiaRA~~~------- 156 (199)
... .+...... ......+.+.+.+ +........+.|.++++ .+.+|||||+||++||||++.
T Consensus 528 ~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l-~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illL 606 (659)
T TIGR00954 528 LGTLRDQIIYPDSSEDMKRRGLSDKDLEQIL-DNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAIL 606 (659)
T ss_pred CcCHHHHHhcCCChhhhhccCCCHHHHHHHH-HHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 100 00010000 0111223444444 33322222344555555 456899999999999999976
Q ss_pred ----------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 ----------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 ----------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
..+.+.+.+.+.+.++|.++|+.+.+
T Consensus 607 DEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~ 642 (659)
T TIGR00954 607 DECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW 642 (659)
T ss_pred eCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH
Confidence 44445555555578889999988753
No 102
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=2.1e-21 Score=156.58 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=50.2
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
.++++|++++|++. ++++++ +||++++|++++|+||||||||||+++|+|.+.+..+
T Consensus 2 ~l~~~~l~~~~~~~-~~~l~~-isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 58 (229)
T cd03254 2 EIEFENVNFSYDEK-KPVLKD-INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58 (229)
T ss_pred eEEEEEEEEecCCC-Cccccc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 57899999999742 369999 9999999999999999999999999999998866543
No 103
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.83 E-value=3e-21 Score=148.88 Aligned_cols=132 Identities=11% Similarity=0.002 Sum_probs=86.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE 105 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~ 105 (199)
++++|++++|++. ++++++ ++|++++|++++|+|+||||||||+++|+|.+.+..+.+ ..++. . ...........
T Consensus 1 i~~~~~~~~~~~~-~~~l~~-i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~-~-~i~~~~q~~~~ 75 (166)
T cd03223 1 IELENLSLATPDG-RVLLKD-LSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI-GMPEG-E-DLLFLPQRPYL 75 (166)
T ss_pred CEEEEEEEEcCCC-Ceeeec-CeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCC-c-eEEEECCCCcc
Confidence 4689999999643 479999 999999999999999999999999999999887654433 33221 0 01111111101
Q ss_pred CCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------------hHHHHHhhcccc
Q psy9640 106 NCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----------------MEQAVHDVCKDI 168 (199)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----------------~~~~l~~~~p~~ 168 (199)
.. .-+.+.+ ... .+.+|||||+||++||||++. ..+.+.+.+.+.
T Consensus 76 ~~---~tv~~nl----~~~-----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 137 (166)
T cd03223 76 PL---GTLREQL----IYP-----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL 137 (166)
T ss_pred cc---ccHHHHh----hcc-----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh
Confidence 01 1122222 100 245899999999999999975 233333333333
Q ss_pred ceeEEEEEeCCC
Q psy9640 169 RIGKILIQTNKA 180 (199)
Q Consensus 169 ~~~~~~~~~~~~ 180 (199)
..+.|.++||.+
T Consensus 138 ~~tiiivsh~~~ 149 (166)
T cd03223 138 GITVISVGHRPS 149 (166)
T ss_pred CCEEEEEeCChh
Confidence 577899999864
No 104
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=2.4e-21 Score=156.70 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=50.0
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++|+++.|++...+++++ ++|++++|++++|+||||||||||+++|+|.+.+..+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~-i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRD-ISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSG 57 (234)
T ss_pred CEEEEEEEEeCCCCccceee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCC
Confidence 46899999997543468999 9999999999999999999999999999999876543
No 105
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.7e-21 Score=162.53 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=94.2
Q ss_pred cccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640 26 RDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------- 94 (199)
Q Consensus 26 i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------- 94 (199)
++++||++.|++. .+++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~-i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHD-VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGT-VTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEECCCCccccCceee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEECccccccchH
Confidence 6899999999642 2469999 99999999999999999999999999999988765543 333322110
Q ss_pred -----ccccccCC---CCCCC--------------chHHHHHHHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEE
Q psy9640 95 -----HADIIVPR---GGENC--------------VAIDLIVQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSIL 151 (199)
Q Consensus 95 -----~~~~~~~~---~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~Qrvaia 151 (199)
........ ..... ...+...+.+.+.+. .+.+. ...+..+.+|||||+||++||
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~~LSgGq~qrv~la 157 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLM---DLGFSRDVMSQSPFQMSGGQMRKIAIV 157 (286)
T ss_pred HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHH---HcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 00111110 00000 000111111111111 12332 222446789999999999999
Q ss_pred eccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
||++. +.+.+.++....+.+.|.++||.+
T Consensus 158 raL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~ 207 (286)
T PRK13646 158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN 207 (286)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 99975 445555554444678899999765
No 106
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.9e-21 Score=156.33 Aligned_cols=152 Identities=14% Similarity=0.031 Sum_probs=94.4
Q ss_pred Ccccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640 25 GRDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------- 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------- 93 (199)
-++++||+++|++.. +++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+ .+..++...
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~-isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHN-VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG-DVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEe-eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCCHHHHH
Confidence 378999999996532 469999 9999999999999999999999999999998866543 333332110
Q ss_pred ----cccccccCC-CCCCC-chHHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEec
Q psy9640 94 ----VHADIIVPR-GGENC-VAIDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRA 153 (199)
Q Consensus 94 ----~~~~~~~~~-~~~~~-~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA 153 (199)
......... ..... ...+. ..+.+.+.+. ...++...+..+.+|||||+||++||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLA---AVGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 000111111 11100 00011 1111111111 1223333344567899999999999999
Q ss_pred cch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
++. +.+.+.+....-+.+.|.++||.+.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 975 4444445443335788999998764
No 107
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2e-21 Score=163.50 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=50.4
Q ss_pred cccccceeeccccc---cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNMV---KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~~---~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
|+++|++++|++.. .++|++ +||++++|++++|+|+||||||||+++|+|++.+..+
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~-vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G 62 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDN-VSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62 (305)
T ss_pred EEEEEEEEEECCCCCccccceee-eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 78999999997532 359999 9999999999999999999999999999999877553
No 108
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.82 E-value=2.4e-21 Score=154.61 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=91.3
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------cccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HADI 98 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~~ 98 (199)
++++|++++|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++.... ....
T Consensus 1 i~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-v~~~g~~~~~~~~~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNV--TALDD-LNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGR-IYIGGRDVTDLPPKDRDIAM 76 (213)
T ss_pred CEEEeeEEEECCe--eeeec-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCcCCcccceEEE
Confidence 4689999999764 79999 99999999999999999999999999999988665433 333221100 0001
Q ss_pred ccCC-CCCCCch---------------HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640 99 IVPR-GGENCVA---------------IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------ 156 (199)
Q Consensus 99 ~~~~-~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------ 156 (199)
.... ....... .+...+.+.+.+. ...+....+..+.+|||||+||++||||+..
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll 153 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAE---LLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL 153 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 0000 0000000 0111111111111 1122222344567899999999999999975
Q ss_pred ---------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ---------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+....-+.++|.++||..
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 154 MDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 444444443333578899999865
No 109
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.82 E-value=2.9e-21 Score=154.16 Aligned_cols=57 Identities=25% Similarity=0.183 Sum_probs=49.8
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~ 84 (199)
++++|+++.|++. ++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~-~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 57 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDG-INISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGT 57 (214)
T ss_pred CEEEEEEEEeCCC-ceeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 4689999999643 379999 99999999999999999999999999999988765443
No 110
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.82 E-value=3.7e-21 Score=155.79 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=49.1
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++|+++.|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 1 l~~~~l~~~~~~~--~~l~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 55 (236)
T cd03219 1 LEVRGLTKRFGGL--VALDD-VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG 55 (236)
T ss_pred CeeeeeEEEECCE--EEecC-ceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 4689999999754 79999 9999999999999999999999999999998866543
No 111
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.82 E-value=3.9e-21 Score=155.30 Aligned_cols=147 Identities=15% Similarity=0.137 Sum_probs=91.4
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------cc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------VH 95 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~~ 95 (199)
++++|++++|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++... ..
T Consensus 1 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~ 76 (232)
T cd03218 1 LRAENLSKRYGKR--KVVNG-VSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK-ILLDGQDITKLPMHKRARLG 76 (232)
T ss_pred CeEEEEEEEeCCE--Eeecc-ceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEecccCCHhHHHhcc
Confidence 4689999999754 79999 99999999999999999999999999999988765443 32222110 00
Q ss_pred cccccCC-CCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---
Q psy9640 96 ADIIVPR-GGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--- 156 (199)
Q Consensus 96 ~~~~~~~-~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--- 156 (199)
....... ....... .+.+ ...+...+. ...+....+..+.+|||||+||++||||++.
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLE---EFHITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred EEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0111111 1100000 0100 011111111 1223333344677899999999999999975
Q ss_pred ------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.... +.+.|.++||.+
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~ 194 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLITDHNVR 194 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 44445444332 567899999875
No 112
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.82 E-value=2.6e-21 Score=156.91 Aligned_cols=150 Identities=11% Similarity=0.076 Sum_probs=93.3
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------ccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------HAD 97 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------~~~ 97 (199)
++++|++++|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++.... ...
T Consensus 2 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~i~~~~~~~~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGAR--RALDD-VSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQ-ISVAGHDLRRAPRAALARLG 77 (236)
T ss_pred EEEEeeEEEECCE--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEECCEEcccCChhhhhhEE
Confidence 5789999999754 79999 99999999999999999999999999999988765443 333321100 000
Q ss_pred ccc-CCCC-CCCchHHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 98 IIV-PRGG-ENCVAIDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 98 ~~~-~~~~-~~~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
... .... ......+. ....+.+.+. ...+....+..+.+|||||+||++||||++.
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 154 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLA---RLGLAERADDKVRELNGGHRRRVEIARALLHRPALL 154 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 100 1111 00000011 1111111111 1223333345677999999999999999975
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+.+.+.+....-+.+.|.++||.+.+
T Consensus 155 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 196 (236)
T TIGR03864 155 LLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEI 196 (236)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH
Confidence 44455554322256789999987654
No 113
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.82 E-value=2.8e-21 Score=154.72 Aligned_cols=150 Identities=13% Similarity=0.086 Sum_probs=93.0
Q ss_pred cccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------c
Q psy9640 26 RDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------H 95 (199)
Q Consensus 26 i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------~ 95 (199)
++++|+++.|++.. .+++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++.... .
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~-~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDG-VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF-ATVDGFDVVKEPAEARRR 79 (218)
T ss_pred eEEEEEEEecCCCCccceeecc-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCce-EEECCEEcccCHHHHHhh
Confidence 57899999997532 269999 99999999999999999999999999999988665433 333321110 0
Q ss_pred cccccCC-CCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---
Q psy9640 96 ADIIVPR-GGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--- 156 (199)
Q Consensus 96 ~~~~~~~-~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--- 156 (199)
....... ..... ...+.+ .+.+.+.+. ...++...+..+.+|||||+||++||||++.
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELAD---RLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 1111111 11110 011111 111111111 1223332344677899999999999999975
Q ss_pred ------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.... +.++|.++||.+.
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~ 198 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQE 198 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence 44555554332 6788999998763
No 114
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.8e-21 Score=158.68 Aligned_cols=149 Identities=16% Similarity=0.131 Sum_probs=92.2
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc----ccccccC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV----HADIIVP 101 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~----~~~~~~~ 101 (199)
++++|++++|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++.... .......
T Consensus 2 l~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~v~q 77 (255)
T PRK11248 2 LQISHLYADYGGK--PALED-INLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS-ITLDGKPVEGPGAERGVVFQ 77 (255)
T ss_pred EEEEEEEEEeCCe--eeEee-eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCCcEEEEeC
Confidence 6789999999753 79999 99999999999999999999999999999988765433 322221100 0000000
Q ss_pred C-CCCCCch-HHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------
Q psy9640 102 R-GGENCVA-IDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------- 156 (199)
Q Consensus 102 ~-~~~~~~~-~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------- 156 (199)
. ....... .+. ..+.+.+.+. ...++...+..+.+|||||+||++||||++.
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE 154 (255)
T PRK11248 78 NEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLK---KVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE 154 (255)
T ss_pred CCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHH---HcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 0000000 000 0111111111 1222222344577899999999999999975
Q ss_pred ------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+....-+.++|.++||.+.
T Consensus 155 Pt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~ 191 (255)
T PRK11248 155 PFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEE 191 (255)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 4444444433335678999998763
No 115
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3e-21 Score=156.79 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=49.8
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++|+++.|++. ++|++ +||++++|++++|+||||||||||+++|+|.+.+..+
T Consensus 3 l~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (239)
T cd03296 3 IEVRNVSKRFGDF--VALDD-VSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSG 57 (239)
T ss_pred EEEEeEEEEECCE--Eeeee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 6789999999764 79999 9999999999999999999999999999998876543
No 116
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.4e-21 Score=161.21 Aligned_cols=153 Identities=17% Similarity=0.119 Sum_probs=96.9
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee--eeecccchhcc--------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV--TLLSMDSFYRV-------- 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~--~~i~~d~~~~~-------- 94 (199)
-++++|+++.|++..++++++ +||++.+|++++|+|+||||||||+++|+|++.+... |.+..++....
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~-v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALND-ISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCCCccceee-EEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 488999999997543469999 9999999999999999999999999999999877652 44433332110
Q ss_pred -ccccccCC---CCCCCchHH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640 95 -HADIIVPR---GGENCVAID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 95 -~~~~~~~~---~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~ 156 (199)
........ ........+ ...+.+...+. .+.+....+..+.+|||||+||++||||++.
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~LS~G~~qrv~laral~~ 160 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLA---DVGMLDYIDSEPANLSGGQKQRVAIAGILAV 160 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHH---HCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 00110000 000000001 11111111111 1223223344677999999999999999975
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.++..+.+.++|.++||.+.
T Consensus 161 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~ 206 (282)
T PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE 206 (282)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 5555555554446788999998653
No 117
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.9e-21 Score=160.53 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=95.7
Q ss_pred Ccccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640 25 GRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------- 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------- 94 (199)
-++++|++++|++. ..++|++ +||++++|++++|+|+||||||||+++|+|++.+..+. +..++....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLND-VSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ-IIIDGDLLTEENVWDIRH 81 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeee-eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEECCcCcHHHHHh
Confidence 37899999999642 2469999 99999999999999999999999999999988765443 323322110
Q ss_pred ccccccCCC---CCCC--------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640 95 HADIIVPRG---GENC--------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 95 ~~~~~~~~~---~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~- 156 (199)
......... .... ...+...+.+.+.+. .+.+....+..+.+|||||+||++||||+..
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 82 KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALE---LVGMQDFKEREPARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred hceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHH---HCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 000100000 0000 001111111111111 1123222344567999999999999999975
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.++..+.+.+.|.++||.+.
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~ 203 (279)
T PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE 203 (279)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 5555666655446788999998653
No 118
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.82 E-value=4.3e-21 Score=161.24 Aligned_cols=148 Identities=13% Similarity=0.050 Sum_probs=94.0
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------ccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHA 96 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~ 96 (199)
-++++|++++|++. ++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++... ...
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~-vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGDK--VVVND-LSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGK-ITVLGEPVPSRARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCCe--EEEcc-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECcccHHHHhhcE
Confidence 47899999999764 79999 99999999999999999999999999999988765443 33322110 000
Q ss_pred cc-ccCCCCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640 97 DI-IVPRGGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---- 156 (199)
Q Consensus 97 ~~-~~~~~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---- 156 (199)
.. ........... .+.+ ...+...+ ....++...+..+.+|||||+||++||||++.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll---~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLL---EFARLESKADVRVALLSGGMKRRLTLARALINDPQL 156 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH---HHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 11 11111110001 1111 11111111 12233444455677999999999999999975
Q ss_pred -----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+... -+.+.|.++||.+
T Consensus 157 llLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~ 196 (303)
T TIGR01288 157 LILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME 196 (303)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH
Confidence 4444444432 2678899999765
No 119
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3.3e-21 Score=153.58 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=91.6
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----ccccc-c
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-----VHADI-I 99 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-----~~~~~-~ 99 (199)
++++|+++.|++. +++++ +||++.+|++++|+|+||||||||+++|+|.+.+.. |.+..++... ..... .
T Consensus 1 l~~~~l~~~~~~~--~~l~~-v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~i~~~~ 76 (210)
T cd03269 1 LEVENVTKRFGRV--TALDD-ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS-GEVLFDGKPLDIAARNRIGYLP 76 (210)
T ss_pred CEEEEEEEEECCE--EEEee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCCchhHHHHccEEEec
Confidence 4689999999754 79999 999999999999999999999999999999876554 3333333211 00011 1
Q ss_pred cCCCCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--------
Q psy9640 100 VPRGGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-------- 156 (199)
Q Consensus 100 ~~~~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-------- 156 (199)
.......... .+.+ .+.+.+.+. ...++...+..+.+|||||+||++||||++.
T Consensus 77 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllD 153 (210)
T cd03269 77 EERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLE---RLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD 153 (210)
T ss_pred cCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHH---HcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1111110000 0110 111111111 1122222334567899999999999999975
Q ss_pred -------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.... +.++|.++||...
T Consensus 154 EP~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~ 190 (210)
T cd03269 154 EPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMEL 190 (210)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHH
Confidence 44444444332 5688999998763
No 120
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.82 E-value=3.4e-21 Score=159.32 Aligned_cols=151 Identities=14% Similarity=0.104 Sum_probs=94.6
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------- 93 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------- 93 (199)
+.-++++|+++.|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...
T Consensus 5 ~~~l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~ 80 (269)
T PRK11831 5 ANLVDMRGVSFTRGNR--CIFDN-ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGE-ILFDGENIPAMSRSRLY 80 (269)
T ss_pred cceEEEeCeEEEECCE--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEccccChhhHH
Confidence 3458999999999754 79999 99999999999999999999999999999988765433 33332110
Q ss_pred ---cccccccCC-CCCCCch-HHHHH---------------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEec
Q psy9640 94 ---VHADIIVPR-GGENCVA-IDLIV---------------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRA 153 (199)
Q Consensus 94 ---~~~~~~~~~-~~~~~~~-~~~~~---------------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA 153 (199)
......... ....... .+.+. ..+...+ ..+.+....+..+.+|||||+||++||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l---~~~gl~~~~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKL---EAVGLRGAAKLMPSELSGGMARRAALARA 157 (269)
T ss_pred HHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHH---HHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 001111111 1111101 11111 0110111 11223333344677999999999999999
Q ss_pred cch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
++. +.+.+.+....-+.++|+++||.+
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 205 (269)
T PRK11831 158 IALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 975 445555554433577899999854
No 121
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.82 E-value=5.6e-21 Score=153.96 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=46.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
++++||++.|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+
T Consensus 1 i~~~~l~~~~~~~--~~l~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 1 IELRDLNVYYGDK--HALKD-ISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEEEEEcCCc--eeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5689999999764 79999 99999999999999999999999999999998
No 122
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3.7e-21 Score=153.38 Aligned_cols=146 Identities=14% Similarity=0.088 Sum_probs=91.5
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHAD 97 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~~ 97 (199)
++++|+++.|++. +++++ +||++++| +++|+||||||||||+++|+|++.+..+. +..++... ....
T Consensus 1 i~~~~~~~~~~~~--~~l~~-vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGKK--RALDG-VSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGT-IRIDGQDVLKQPQKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECCE--EEEcc-eeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccE-EEECCCccccchHHHHhheE
Confidence 4689999999764 79999 99999999 99999999999999999999988765443 33332110 0001
Q ss_pred ccc-CCCCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 98 IIV-PRGGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 98 ~~~-~~~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
... ......... .+.+ .+.+...+. ...++...+..+.+|||||+||++||||+..
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 152 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE---LVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSIL 152 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHH---HCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 111 111100000 0111 111111111 1223333345677899999999999999975
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+... +.+.|.++||.+.
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~ 191 (211)
T cd03264 153 IVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVED 191 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHH
Confidence 4445555443 3678999998764
No 123
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.82 E-value=3.6e-21 Score=152.67 Aligned_cols=150 Identities=11% Similarity=0.018 Sum_probs=92.2
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHAD 97 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~~ 97 (199)
++++|+++.|++. .++++ +||++++|++++|+|+||||||||+++|+|.+.+..+.+ ..++... ....
T Consensus 1 l~i~~l~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDGR--ALFSG-LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV-LLNGGPLDFQRDSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCCc--eeecc-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccccHHhhhheE
Confidence 4689999999764 78999 999999999999999999999999999999887654433 2222110 0000
Q ss_pred ccc-CCCCC-CCchHHHH--------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------
Q psy9640 98 IIV-PRGGE-NCVAIDLI--------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----------- 156 (199)
Q Consensus 98 ~~~-~~~~~-~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----------- 156 (199)
... ..... +....+.+ .+.+...+. ...++...+....+|||||+||++||||++.
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALA---RVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHH---HcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 000 00000 00000100 011111111 1122222244567899999999999999975
Q ss_pred ----------hHHHHHhhccccceeEEEEEeCCCCCC
Q psy9640 157 ----------MEQAVHDVCKDIRIGKILIQTNKATDE 183 (199)
Q Consensus 157 ----------~~~~l~~~~p~~~~~~~~~~~~~~~~~ 183 (199)
+.+.+.+... -+.+.|.++||...+.
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~ 189 (201)
T cd03231 154 TALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDLGLS 189 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchhhh
Confidence 4444444332 2667899999887654
No 124
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.82 E-value=7.4e-21 Score=151.30 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=92.0
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------c
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------V 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~ 94 (199)
..++++|++++|+....+++++ +||++.+|++++|+|+||||||||+++|+|++.+..+. +..++... .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~-isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKN-VSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK-IEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccC-ceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCe-EEECCEEhHHCCHHHHHh
Confidence 3589999999997543479999 99999999999999999999999999999988665433 33332110 0
Q ss_pred ccccc-cCCCCCCC-----------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640 95 HADII-VPRGGENC-----------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------ 156 (199)
Q Consensus 95 ~~~~~-~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------ 156 (199)
..... ........ ...+.+.+.+ . .+..+..|||||+||++||||++.
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l----~----------~~~~~~~LS~G~~qrv~laral~~~p~lll 148 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGAL----R----------VSEGGLNLSQGQRQLLCLARALLKRPRVLV 148 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCCCCHHHHHHHh----h----------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 00010 00000000 0011111111 1 233567899999999999999975
Q ss_pred ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+... +.+.|.++|+.+.
T Consensus 149 lDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~th~~~~ 186 (207)
T cd03369 149 LDEATASIDYATDALIQKTIREEFT--NSTILTIAHRLRT 186 (207)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHH
Confidence 4555555532 5778999998764
No 125
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3.6e-21 Score=155.89 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=49.0
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++|++++|++. +.++++ ++|++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 1 l~~~~l~~~~~~~-~~~l~~-i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 56 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKD-VSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSG 56 (236)
T ss_pred CEEEEEEEEeCCC-Cceeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 4688999999643 369999 9999999999999999999999999999998866544
No 126
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.82 E-value=4.4e-21 Score=152.25 Aligned_cols=145 Identities=11% Similarity=0.059 Sum_probs=90.8
Q ss_pred cccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------------c
Q psy9640 28 LEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------------V 94 (199)
Q Consensus 28 l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------------~ 94 (199)
++|+++.|++. +++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++... .
T Consensus 1 i~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~ 76 (206)
T TIGR03608 1 LKNISKKFGDK--IILDD-LNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQ-VYLNGKETPPLNSKKASKFRRE 76 (206)
T ss_pred CcceEEEECCE--EEEec-eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEccccchhhHHHHHHh
Confidence 57999999754 79999 99999999999999999999999999999988765443 33332210 0
Q ss_pred ccccccCC-CCCCCchH-H--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640 95 HADIIVPR-GGENCVAI-D--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 95 ~~~~~~~~-~~~~~~~~-~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
........ ........ + ...+.+.+.+. ...+....+....+|||||+||++||||+..
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p 153 (206)
T TIGR03608 77 KLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALE---KVGLNLKLKQKIYELSGGEQQRVALARAILKDP 153 (206)
T ss_pred CeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCchhhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 00111100 00100000 1 01111111111 1222233344567899999999999999975
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.... +.+.|.++|+.+
T Consensus 154 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~ 195 (206)
T TIGR03608 154 PLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPE 195 (206)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 55555555433 677899999875
No 127
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.82 E-value=7.1e-21 Score=150.51 Aligned_cols=148 Identities=9% Similarity=-0.025 Sum_probs=91.4
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHAD 97 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~~ 97 (199)
++++|+++.|++. +++++ +||++.+|++++|+||||||||||+++|+|.+.+..+. +..++... ....
T Consensus 1 l~~~~l~~~~~~~--~~l~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGER--MLFEG-LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGE-VRWNGTALAEQRDEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECCE--EEEee-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccE-EEECCEEcccchHHhhhheE
Confidence 4689999999764 79999 99999999999999999999999999999988765443 33332210 0001
Q ss_pred cccCCC-CCCC-chHHHHH----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------
Q psy9640 98 IIVPRG-GENC-VAIDLIV----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------- 156 (199)
Q Consensus 98 ~~~~~~-~~~~-~~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------- 156 (199)
...... .... ...+.+. +.+.+.+. ...+....+..+.+|||||+||++||||+..
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 153 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALA---AVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDE 153 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHH---HcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 111110 0000 0011110 01111111 1122222344567899999999999999975
Q ss_pred ------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.... +.++|.++|++..
T Consensus 154 Pt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~ 189 (198)
T TIGR01189 154 PTTALDKAGVALLAGLLRAHLAR-GGIVLLTTHQDLG 189 (198)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEEccccc
Confidence 44444443222 5678999998854
No 128
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=3.7e-21 Score=159.49 Aligned_cols=149 Identities=11% Similarity=0.032 Sum_probs=93.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~ 95 (199)
-++++|+++.|+.. .+++++ +||++++|++++|+|+||||||||+++|+|++.+..+.+ ..++.... .
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~ 80 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKG-LSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV-KVMGREVNAENEKWVRSK 80 (274)
T ss_pred eEEEEEEEEEeCCC-Ceeeee-EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE-EECCEECCCCCHHHHHhh
Confidence 47899999999642 369999 999999999999999999999999999999887654433 22221110 0
Q ss_pred cccccCC---CCCCCchHH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640 96 ADIIVPR---GGENCVAID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 96 ~~~~~~~---~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
....... ........+ ...+.+...+. .+.+....+..+.+|||||+||++||||++.
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p 157 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALK---AVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDP 157 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHH---HCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 0111110 000000001 11111111111 1122222344677999999999999999976
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++... +.+.|.++||.+
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~ 199 (274)
T PRK13647 158 DVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVD 199 (274)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 55555555433 678899999765
No 129
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=3e-21 Score=161.33 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=94.8
Q ss_pred cccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640 26 RDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------- 94 (199)
Q Consensus 26 i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------- 94 (199)
++++|++++|++. ..++|++ +||++++|++++|+|+||||||||+++|+|++.+..+ .+..++....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~ 80 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYD-VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG-TVTIGERVITAGKKNKKL 80 (290)
T ss_pred EEEEEEEEEECCCCcccccceee-EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECccccccchH
Confidence 7899999999642 1469999 9999999999999999999999999999998876543 3333332110
Q ss_pred -----ccccccCC---CCCCCc--------------hHHHHHHHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEE
Q psy9640 95 -----HADIIVPR---GGENCV--------------AIDLIVQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSIL 151 (199)
Q Consensus 95 -----~~~~~~~~---~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~Qrvaia 151 (199)
........ ...+.. ..+...+.+.+.+. .+.++ ...+..+.+|||||+||++||
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~~LSgGq~qrv~lA 157 (290)
T PRK13634 81 KPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIE---LVGLPEELLARSPFELSGGQMRRVAIA 157 (290)
T ss_pred HHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HCCCChhhhhCCcccCCHHHHHHHHHH
Confidence 00111110 000000 00011111111111 22343 223456779999999999999
Q ss_pred eccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
||++. +.+.+.+.....+.+.|.++||.+
T Consensus 158 raL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~ 207 (290)
T PRK13634 158 GVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME 207 (290)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99975 455555554544678899999865
No 130
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.82 E-value=4.7e-21 Score=155.47 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=49.7
Q ss_pred cccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++|+++.|++. .++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~-i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 58 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKG-LSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSG 58 (238)
T ss_pred CeEEEEEEecCCCCCccceec-eEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCC
Confidence 4689999999653 2469999 9999999999999999999999999999998866543
No 131
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=5.5e-21 Score=155.53 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=92.0
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------cc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------HA 96 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~~ 96 (199)
++++|++++|++. +++|++ +||++++|++++|+||||||||||+++|+|.+.+..+ .+..++.... ..
T Consensus 1 l~~~~l~~~~~~~-~~~l~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i 77 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNN-LNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSG-EIFIDGEDIREQDPVELRRKI 77 (242)
T ss_pred CEEEEEEEEeCCc-ceEeee-eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCeEcCcCChHHhhcce
Confidence 4689999999762 379999 9999999999999999999999999999998876543 3333221100 00
Q ss_pred ccccCC-CCCCCch-HHHH--------------HHHHHHHHhcCceeecCC--ceeeecceecCCeeeeeeEEeccch--
Q psy9640 97 DIIVPR-GGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQ--GYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 97 ~~~~~~-~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~--~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
...... ....... .+.+ ...+.+.+. .+.++. ..+..+.+|||||+||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p 154 (242)
T cd03295 78 GYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLA---LVGLDPAEFADRYPHELSGGQQQRVGVARALAADP 154 (242)
T ss_pred EEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 111111 1110000 0111 111111111 123332 2244577899999999999999976
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.....+.++|.++|+.+
T Consensus 155 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~ 197 (242)
T cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID 197 (242)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 444444444433577899999876
No 132
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.82 E-value=5.4e-21 Score=156.47 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=49.4
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++||++.|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 1 i~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (252)
T TIGR03005 1 VRFSDVTKRFGIL--TVLDG-LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEG 55 (252)
T ss_pred CEEEEEEEEeCCe--eEEee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4689999999754 79999 9999999999999999999999999999998876544
No 133
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.82 E-value=4.2e-21 Score=157.35 Aligned_cols=147 Identities=10% Similarity=0.087 Sum_probs=92.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeee----------ecccchhcc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL----------LSMDSFYRV 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~----------i~~d~~~~~ 94 (199)
-++++|+++.|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+.+ ++++.....
T Consensus 4 ~l~~~~l~~~~~~~--~vl~~-vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 4 LVSLENVSVSFGQR--RVLSD-VSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEeceEEEECCc--eEEEe-EEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 37899999999764 79999 999999999999999999999999999999887654322 222211000
Q ss_pred cccccc-CCCCCC-CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------------
Q psy9640 95 HADIIV-PRGGEN-CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------- 156 (199)
Q Consensus 95 ~~~~~~-~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------- 156 (199)
...... ...... ....+.+.+.+ +. +.+....+..+..|||||+||++||||++.
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l-~~------~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 153 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPAL-KR------VQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHH-HH------cCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 000000 000000 00111122222 11 122222234567899999999999999975
Q ss_pred -----hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -----MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -----~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.....+.+.|.++||.+.
T Consensus 154 ~~~~~l~~~L~~~~~~~g~tiiivsH~~~~ 183 (251)
T PRK09544 154 NGQVALYDLIDQLRRELDCAVLMVSHDLHL 183 (251)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 4444555444336778999998763
No 134
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.82 E-value=5.1e-21 Score=152.25 Aligned_cols=148 Identities=14% Similarity=0.104 Sum_probs=91.6
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADI 98 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~ 98 (199)
++++|++++|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+ .+..++... .....
T Consensus 1 l~~~~l~~~~~~~--~~l~~-~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGKK--RVLDD-ISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG-EITFDGKSYQKNIEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECCe--EeEee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCCcccchHHHHhhEEE
Confidence 4689999999654 79999 9999999999999999999999999999998876543 333333211 00111
Q ss_pred ccCC-CCC-CCchHHHHH----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------
Q psy9640 99 IVPR-GGE-NCVAIDLIV----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------- 156 (199)
Q Consensus 99 ~~~~-~~~-~~~~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------- 156 (199)
.... ... +....+.+. +.+...+. ...+....+..+.+|||||+||++||||++.
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 153 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD---VVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP 153 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHH---HcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 1111 111 101111110 01101111 1122222234567899999999999999975
Q ss_pred -----------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -----------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -----------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+... -+.+.|.++||.+.
T Consensus 154 t~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~ 188 (208)
T cd03268 154 TNGLDPDGIKELRELILSLRD-QGITVLISSHLLSE 188 (208)
T ss_pred cccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHH
Confidence 4444444433 25678999998763
No 135
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=9e-21 Score=161.43 Aligned_cols=131 Identities=15% Similarity=0.110 Sum_probs=97.7
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------- 93 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------- 93 (199)
...+.++||+|.|... +++|++ +||+++.|+.++|+|+||+||||++++|..++++..+. +-.|+...
T Consensus 260 ~g~v~F~~V~F~y~~~-r~iL~~-isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~-I~id~qdir~vtq~slR 336 (497)
T COG5265 260 LGAVAFINVSFAYDPR-RPILNG-ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS-ITIDGQDIRDVTQQSLR 336 (497)
T ss_pred cceEEEEEEEeecccc-chhhcC-ccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce-EEEcchhHHHhHHHHHH
Confidence 3458899999999765 589999 99999999999999999999999999999999876433 22332211
Q ss_pred -cccccccCCCC------------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 94 -VHADIIVPRGG------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 94 -~~~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
...-.+++... ......+++..+++..-....+..+|++|++ .|-.|||||||||||||+++.
T Consensus 337 ~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk 416 (497)
T COG5265 337 RAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK 416 (497)
T ss_pred HHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence 11111111111 1123456777777666666778899999998 577899999999999999975
No 136
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.82 E-value=4.5e-21 Score=164.50 Aligned_cols=140 Identities=11% Similarity=0.028 Sum_probs=90.6
Q ss_pred eccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh-------------cccccccc
Q psy9640 34 QYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY-------------RVHADIIV 100 (199)
Q Consensus 34 ~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~-------------~~~~~~~~ 100 (199)
+|+.. .++++ +||++++|++++|+|+||||||||+++|+|++.+..+.+ ..++.. +....+.+
T Consensus 2 ~~~~~--~~l~~-vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I-~i~G~~i~~~~~~~~~~~rr~~i~~v~ 77 (363)
T TIGR01186 2 KTGGK--KGVND-ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI-FIDGENIMKQSPVELREVRRKKIGMVF 77 (363)
T ss_pred ccCCc--eeEEe-eEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHHHHHHHhCcEEEEE
Confidence 34443 68999 999999999999999999999999999999987765433 333211 11111111
Q ss_pred CCC-CCCCch---------------HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--------
Q psy9640 101 PRG-GENCVA---------------IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-------- 156 (199)
Q Consensus 101 ~~~-~~~~~~---------------~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-------- 156 (199)
... .....+ .+...+.+.+.+. .+.+....+..+.+|||||+|||+||||+..
T Consensus 78 Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~---~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 78 QQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLK---LVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---hcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111 110000 0111111212221 2344444455788999999999999999976
Q ss_pred -------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++....+.+.|+++||.+
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 667777776666788899999765
No 137
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.82 E-value=6.3e-21 Score=165.54 Aligned_cols=148 Identities=11% Similarity=0.007 Sum_probs=92.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~ 95 (199)
-++++|+++.|++. ++|++ +||++++|++++|+||||||||||+|+|+|.+.+..+. +..++.... .
T Consensus 3 ~L~~~nls~~y~~~--~vL~~-vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~-I~l~G~~i~~~~~~~~~~~ 78 (402)
T PRK09536 3 MIDVSDLSVEFGDT--TVLDG-VDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGT-VLVAGDDVEALSARAASRR 78 (402)
T ss_pred eEEEeeEEEEECCE--EEEEe-eEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcE-EEECCEEcCcCCHHHHhcc
Confidence 37899999999764 79999 99999999999999999999999999999988765433 322221100 0
Q ss_pred ccc-ccCCCCCCC-----------------ch--HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640 96 ADI-IVPRGGENC-----------------VA--IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE 155 (199)
Q Consensus 96 ~~~-~~~~~~~~~-----------------~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~ 155 (199)
... ......... .. .....+.+.+.+. .+.+....+....+|||||+||++||||++
T Consensus 79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le---~vgl~~~~~~~~~~LSgGerQRv~IArAL~ 155 (402)
T PRK09536 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME---RTGVAQFADRPVTSLSGGERQRVLLARALA 155 (402)
T ss_pred eEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHH---HcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 000 000000000 00 0001111111111 122222224456689999999999999997
Q ss_pred h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
. +.+.+.++.. -+.++|.++||-+
T Consensus 156 ~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~ 200 (402)
T PRK09536 156 QATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLD 200 (402)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH
Confidence 6 5555666554 3678899999754
No 138
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.81 E-value=7.7e-21 Score=159.96 Aligned_cols=149 Identities=11% Similarity=0.020 Sum_probs=94.7
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cc
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VH 95 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~ 95 (199)
.-++++|++++|++. .+|++ +||++++|+++||+||||||||||+++|+|.+.+..+.+ ..++... ..
T Consensus 6 ~~i~i~~l~k~~~~~--~~l~~-vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v-~i~G~~~~~~~~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGDK--LVVDG-LSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI-SLCGEPVPSRARHARQR 81 (306)
T ss_pred ceEEEEeEEEEECCe--EEEec-ceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEecccchHHHHhc
Confidence 358999999999754 79999 999999999999999999999999999999887765433 3322211 00
Q ss_pred ccc-ccCCCCCCCchH-HHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---
Q psy9640 96 ADI-IVPRGGENCVAI-DLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--- 156 (199)
Q Consensus 96 ~~~-~~~~~~~~~~~~-~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--- 156 (199)
... ......+..... +.+ ...+.+.+. .+.+....+.....|||||+||++||||++.
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLE---FAKLENKADAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 111 111111111011 111 111111111 2233333455667899999999999999976
Q ss_pred ------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+... -+.+.|+++|+.+
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~ 199 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFME 199 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH
Confidence 4445555432 3678899998665
No 139
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=7.3e-21 Score=153.86 Aligned_cols=151 Identities=16% Similarity=0.144 Sum_probs=93.0
Q ss_pred cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640 26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------- 94 (199)
Q Consensus 26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------- 94 (199)
++++|+++.|++. .++++++ +||++++|++++|+||||||||||+++|+|.+.+..+ .+..++....
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~-~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKD-VSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG-SVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred eEEecceEEccCCCCceeeeec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcccCCHHHHHH
Confidence 6789999999653 1279999 9999999999999999999999999999999876543 3333322110
Q ss_pred ---ccccccCC-CCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640 95 ---HADIIVPR-GGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE 155 (199)
Q Consensus 95 ---~~~~~~~~-~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~ 155 (199)
........ ....... .+.+ ...+.+.+. ...++...+..+.+|||||+||++||||++
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLE---LVGLEDKADAYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HCCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 00111111 1110001 1111 011111111 122332234456789999999999999997
Q ss_pred h---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 156 T---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
. +.+.+.+.....+.++|.++||.+.
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~ 203 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEV 203 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 5 3344444433335688999998764
No 140
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=5.9e-21 Score=152.04 Aligned_cols=150 Identities=13% Similarity=-0.008 Sum_probs=92.0
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc------ccccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV------HADII 99 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~------~~~~~ 99 (199)
++++|+++.|++. .++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++.... .....
T Consensus 3 l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 78 (207)
T PRK13539 3 LEGEDLACVRGGR--VLFSG-LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT-IKLDGGDIDDPDVAEACHYL 78 (207)
T ss_pred EEEEeEEEEECCe--EEEec-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEeCcchhhHhhcEEe
Confidence 6889999999764 68999 99999999999999999999999999999987765433 333321100 00011
Q ss_pred c-CCCCCCCch-HHHHH----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------
Q psy9640 100 V-PRGGENCVA-IDLIV----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----------- 156 (199)
Q Consensus 100 ~-~~~~~~~~~-~~~~~----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----------- 156 (199)
. ......... .+.+. +.+.+.+. ...+....+....+|||||+||++||||++.
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 155 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALE---AVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT 155 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHH---HcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 100000000 11110 00101111 1122222233456899999999999999975
Q ss_pred ----------hHHHHHhhccccceeEEEEEeCCCCCC
Q psy9640 157 ----------MEQAVHDVCKDIRIGKILIQTNKATDE 183 (199)
Q Consensus 157 ----------~~~~l~~~~p~~~~~~~~~~~~~~~~~ 183 (199)
+.+.+.+.... +.+.|.++|+.+..+
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~ 191 (207)
T PRK13539 156 AALDAAAVALFAELIRAHLAQ-GGIVIAATHIPLGLP 191 (207)
T ss_pred ccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCchhhc
Confidence 34444443322 678899999877554
No 141
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=1.1e-20 Score=156.03 Aligned_cols=133 Identities=15% Similarity=0.089 Sum_probs=90.4
Q ss_pred cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc------------hhccccccccCCC------
Q psy9640 42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS------------FYRVHADIIVPRG------ 103 (199)
Q Consensus 42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~------------~~~~~~~~~~~~~------ 103 (199)
.++| +||+++.|++..|+|-||||||||+|++-++..|..+.++..+. +++....+.+...
T Consensus 43 Gv~~-~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 43 GVND-ASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred eecc-ceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 5789 99999999999999999999999999998888776554443221 1111111111110
Q ss_pred --CCC--------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------------
Q psy9640 104 --GEN--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----------------- 156 (199)
Q Consensus 104 --~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----------------- 156 (199)
..| ...-++-.+...+++. .+.+...-+..+.+|||||+|||.||||+..
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~---~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPL 198 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALE---LVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL 198 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHH---HcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChH
Confidence 111 0111122222223332 3445444455788999999999999999975
Q ss_pred ----hHHHHHhhccccceeEEEEEeC
Q psy9640 157 ----MEQAVHDVCKDIRIGKILIQTN 178 (199)
Q Consensus 157 ----~~~~l~~~~p~~~~~~~~~~~~ 178 (199)
|.+.|+++...++=|.|||+||
T Consensus 199 IR~~mQdeLl~Lq~~l~KTIvFitHD 224 (386)
T COG4175 199 IRTEMQDELLELQAKLKKTIVFITHD 224 (386)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 9999999999999999999996
No 142
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.81 E-value=6.9e-21 Score=151.87 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=91.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----------c
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-----------V 94 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-----------~ 94 (199)
++++|++++|++. +++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++... .
T Consensus 1 l~~~~l~~~~~~~--~~l~~-~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 76 (213)
T cd03262 1 IEIKNLHKSFGDF--HVLKG-IDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGT-IIIDGLKLTDDKKNINELRQ 76 (213)
T ss_pred CEEEEEEEEECCe--EeecC-ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCccchhHHHHHh
Confidence 4689999999764 79999 99999999999999999999999999999988765433 33322111 0
Q ss_pred ccccc-cCCCCCCCch-HHHH---------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640 95 HADII-VPRGGENCVA-IDLI---------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 95 ~~~~~-~~~~~~~~~~-~~~~---------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~- 156 (199)
..... .......... .+.+ .+.+.+.+. ...++...+..+.+|||||+||++||||++.
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 153 (213)
T cd03262 77 KVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLE---KVGLADKADAYPAQLSGGQQQRVAIARALAMN 153 (213)
T ss_pred cceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHH---HcCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence 00000 0100010000 0111 011111111 1122222344567899999999999999975
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+... .+.++|+++||...
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~~ 197 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGF 197 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH
Confidence 4445554443 25678999998754
No 143
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.81 E-value=5.4e-21 Score=153.43 Aligned_cols=148 Identities=12% Similarity=0.104 Sum_probs=92.1
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------cc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------VH 95 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~~ 95 (199)
++++|++++|++. +++++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++... ..
T Consensus 1 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 76 (222)
T cd03224 1 LEVENLNAGYGKS--QILFG-VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGS-IRFDGRDITGLPPHERARAG 76 (222)
T ss_pred CEEeeEEeecCCe--eEeee-eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcCCCCHHHHHhcC
Confidence 5689999999754 79999 99999999999999999999999999999988765433 33332110 00
Q ss_pred ccccc-CCCCCCCchH-HHH------------HHHHHHHHhcCcee-ecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640 96 ADIIV-PRGGENCVAI-DLI------------VQHIHSQLQAGVSV-DMPQGYTYEGKRCAVSKICGVSILRAGET---- 156 (199)
Q Consensus 96 ~~~~~-~~~~~~~~~~-~~~------------~~~l~~~~~~~~~~-~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---- 156 (199)
..... .......... +.+ ...+...+. .+ .++...+..+.+|||||+||++||||++.
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~---~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 77 IGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYE---LFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred eEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHH---HHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 01111 1111100000 100 001101111 11 12233345677899999999999999975
Q ss_pred -----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -----------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+... .+.+.|.++||.+.
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~ 194 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARF 194 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHH
Confidence 4555555433 35678999998763
No 144
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.81 E-value=9.9e-21 Score=146.76 Aligned_cols=135 Identities=19% Similarity=0.141 Sum_probs=85.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE 105 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~ 105 (199)
++++|++++|++...+++++ +++++++|++++|+|+||||||||+++|+|.+.+..+ .+..++......
T Consensus 1 i~~~~l~~~~~~~~~~~l~~-~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~--------- 69 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRN-VSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG-RVRLDGADISQW--------- 69 (173)
T ss_pred CEEEEEEEEcCCCCCcceee-eEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-eEEECCEEcccC---------
Confidence 46899999997643469999 9999999999999999999999999999998876543 333333211000
Q ss_pred CCchHHHHHHHHHHHHhcCceeecCCceeeecc--eecCCeeeeeeEEeccch---------------------hHHHHH
Q psy9640 106 NCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGK--RCAVSKICGVSILRAGET---------------------MEQAVH 162 (199)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~--~lSgGq~QrvaiaRA~~~---------------------~~~~l~ 162 (199)
........+ ....+.+..+..... -|||||+||++||||++. +.+.+.
T Consensus 70 ---~~~~~~~~i------~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~ 140 (173)
T cd03246 70 ---DPNELGDHV------GYLPQDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140 (173)
T ss_pred ---CHHHHHhhe------EEECCCCccccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHH
Confidence 000000000 000000000000000 089999999999999975 445555
Q ss_pred hhccccceeEEEEEeCCCC
Q psy9640 163 DVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 163 ~~~p~~~~~~~~~~~~~~~ 181 (199)
+... -+.+.|.++||.+.
T Consensus 141 ~~~~-~~~tii~~sh~~~~ 158 (173)
T cd03246 141 ALKA-AGATRIVIAHRPET 158 (173)
T ss_pred HHHh-CCCEEEEEeCCHHH
Confidence 5433 26788999998753
No 145
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.81 E-value=7.8e-21 Score=147.94 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=87.4
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCC-C
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG-G 104 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~-~ 104 (199)
++++|++++|++...+++++ +||++++|++++|+|+||||||||+++|+|...+..+ .+..++...........+. .
T Consensus 1 i~~~~~~~~~~~~~~~~l~~-i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKN-LSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG-EITLDGVPVSDLEKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCCCccceEE-EEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-EEEECCEEHHHHHHHHHhhEE
Confidence 46889999997643469999 9999999999999999999999999999998766543 3333332110000000000 0
Q ss_pred CCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHh
Q psy9640 105 ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHD 163 (199)
Q Consensus 105 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~ 163 (199)
+-..........+.+.+ +..|||||+||++||||++. +.+.+.+
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE 143 (178)
T ss_pred EEccCCeeecccHHHhh---------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 00000000000000000 56899999999999999975 4455555
Q ss_pred hccccceeEEEEEeCCCCC
Q psy9640 164 VCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 164 ~~p~~~~~~~~~~~~~~~~ 182 (199)
... ..+.|.++||.+..
T Consensus 144 ~~~--~~tii~~sh~~~~~ 160 (178)
T cd03247 144 VLK--DKTLIWITHHLTGI 160 (178)
T ss_pred HcC--CCEEEEEecCHHHH
Confidence 532 56779999987643
No 146
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=6.3e-21 Score=147.87 Aligned_cols=130 Identities=14% Similarity=0.078 Sum_probs=85.2
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCC--
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG-- 103 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~-- 103 (199)
++++|++++|++. +++++ ++|++.+|++++|+|+||||||||+++|+|.+.+..+ .+..++...........+.
T Consensus 1 l~~~~l~~~~~~~--~~l~~-~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDD-ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG-EIKVLGKDIKKEPEEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECCe--eeeee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEcccchHhhhccEE
Confidence 4688999999754 69999 9999999999999999999999999999998866543 3333332110000000000
Q ss_pred --CCCCchH--HHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hH
Q psy9640 104 --GENCVAI--DLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------ME 158 (199)
Q Consensus 104 --~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~ 158 (199)
..++.-+ ..+.+.+ .|||||+||++||||+.. +.
T Consensus 77 ~~~q~~~~~~~~tv~~~~---------------------~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~ 135 (173)
T cd03230 77 YLPEEPSLYENLTVRENL---------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135 (173)
T ss_pred EEecCCccccCCcHHHHh---------------------hcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 0000000 0111111 189999999999999975 55
Q ss_pred HHHHhhccccceeEEEEEeCCCC
Q psy9640 159 QAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 159 ~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.... +.+.|.++||.+.
T Consensus 136 ~~l~~~~~~-g~tiii~th~~~~ 157 (173)
T cd03230 136 ELLRELKKE-GKTILLSSHILEE 157 (173)
T ss_pred HHHHHHHHC-CCEEEEECCCHHH
Confidence 555555444 5678999998763
No 147
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.2e-21 Score=155.73 Aligned_cols=150 Identities=16% Similarity=0.116 Sum_probs=92.7
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------cc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VH 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~ 95 (199)
.++++|++++|++. +++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+. +..++... ..
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~ 78 (241)
T PRK14250 3 EIEFKEVSYSSFGK--EILKD-ISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS-ILIDGVDIKTIDVIDLRRK 78 (241)
T ss_pred eEEEEeEEEEeCCe--eeeee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEhhhcChHHhhhc
Confidence 47899999999754 79999 99999999999999999999999999999988765433 33332110 00
Q ss_pred cccccCCCCCCCchH-HHH----------HHHHHHHHhcCceeecCC-ceeeecceecCCeeeeeeEEeccch-------
Q psy9640 96 ADIIVPRGGENCVAI-DLI----------VQHIHSQLQAGVSVDMPQ-GYTYEGKRCAVSKICGVSILRAGET------- 156 (199)
Q Consensus 96 ~~~~~~~~~~~~~~~-~~~----------~~~l~~~~~~~~~~~~~~-~~~~~g~~lSgGq~QrvaiaRA~~~------- 156 (199)
...........+... +.+ ...+...+. ...++. ..+..+.+|||||+||++||||++.
T Consensus 79 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 155 (241)
T PRK14250 79 IGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS---IVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLL 155 (241)
T ss_pred EEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHH---HcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 000000000000000 000 001111111 122321 2234567899999999999999975
Q ss_pred --------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+....-+.++|.++||.+.
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~ 194 (241)
T PRK14250 156 DEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ 194 (241)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 4445555443335678999998763
No 148
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=5.1e-21 Score=159.08 Aligned_cols=152 Identities=17% Similarity=0.138 Sum_probs=95.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~ 95 (199)
-++++||++.|+...+++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+.+ ..++.... .
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~-vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i-~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKD-VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI-TVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred eEEEEEEEEEeCCCCccceee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECCcCcHHHHhhh
Confidence 378999999997544579999 999999999999999999999999999999987654433 22221110 0
Q ss_pred cccccCC---CCCCC--------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640 96 ADIIVPR---GGENC--------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 96 ~~~~~~~---~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
....... ...+. .......+.+...+. ...+....+..+.+|||||+||++||||++.
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALR---QVGMEDFLNREPHRLSGGQKQRVAIAGVLALQP 159 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHH---HcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 0000000 00000 000111111111111 1123333344667899999999999999975
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+....-+.+.|.++||.+.
T Consensus 160 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~ 203 (279)
T PRK13635 160 DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE 203 (279)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 5555555554446788999998663
No 149
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=4e-21 Score=152.67 Aligned_cols=151 Identities=10% Similarity=-0.005 Sum_probs=93.1
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHAD 97 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~~ 97 (199)
++++|++++|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++... ....
T Consensus 2 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-v~~~g~~~~~~~~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDER--ILFSG-LSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGE-VLWQGEPIRRQRDEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECCE--EEEec-ceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEcccchHHhhhheE
Confidence 5789999999764 79999 99999999999999999999999999999988765443 33332110 0000
Q ss_pred cccCCC-CCCCch-HHHHH-----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--------
Q psy9640 98 IIVPRG-GENCVA-IDLIV-----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-------- 156 (199)
Q Consensus 98 ~~~~~~-~~~~~~-~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-------- 156 (199)
...... ...... .+.+. +.+...+. ...+....+..+..|||||+||++||||++.
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 154 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALA---QVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILD 154 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHH---HcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 000110 000000 01110 01111111 1122222244567899999999999999975
Q ss_pred -------------hHHHHHhhccccceeEEEEEeCCCCCCc
Q psy9640 157 -------------MEQAVHDVCKDIRIGKILIQTNKATDEP 184 (199)
Q Consensus 157 -------------~~~~l~~~~p~~~~~~~~~~~~~~~~~~ 184 (199)
+.+.+.+.. .-+.+.|.++||...++.
T Consensus 155 EPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 155 EPFTAIDKQGVARLEALLAQHA-EQGGMVILTTHQDLPVAS 194 (204)
T ss_pred CCCccCCHHHHHHHHHHHHHHH-HCCCEEEEEecChhhhcc
Confidence 333333332 225678999999887654
No 150
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.81 E-value=1.1e-20 Score=154.27 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=50.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
-++++|++++|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 58 (250)
T PRK11264 3 AIEVKNLVKKFHGQ--TVLHG-IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAG 58 (250)
T ss_pred cEEEeceEEEECCe--eeecc-ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 37899999999754 79999 9999999999999999999999999999998765443
No 151
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=5.1e-21 Score=159.74 Aligned_cols=149 Identities=12% Similarity=0.049 Sum_probs=93.2
Q ss_pred cccccceeeccccc---cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640 26 RDLEGVIKQYVNMV---KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------- 94 (199)
Q Consensus 26 i~l~nvs~~y~~~~---~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------- 94 (199)
++++|++++|+... +++|++ +||++.+|++++|+|+||||||||+++|+|.+.+..+. +..++....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~-vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGK-VTVGDIVVSSTSKQKEI 79 (288)
T ss_pred EEEEEEEEEeCCCCcccccceee-eEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE-EEECCEECccccccccH
Confidence 67899999996431 259999 99999999999999999999999999999988765443 333332110
Q ss_pred -----ccccccCC---CCCCCchHHH--------------HHHHHHHHHhcCceeecCC-ceeeecceecCCeeeeeeEE
Q psy9640 95 -----HADIIVPR---GGENCVAIDL--------------IVQHIHSQLQAGVSVDMPQ-GYTYEGKRCAVSKICGVSIL 151 (199)
Q Consensus 95 -----~~~~~~~~---~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~~~-~~~~~g~~lSgGq~Qrvaia 151 (199)
.....+.. ........+. ....+.+.+. .+.+.. ..+..+..|||||+||++||
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~~LSgGqkqrvaiA 156 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLE---MVGLADEFWEKSPFELSGGQMRRVAIA 156 (288)
T ss_pred HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHH---HcCCChhhccCCcccCCHHHHHHHHHH
Confidence 00111111 0000000011 1111111111 123321 23456779999999999999
Q ss_pred eccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
||++. +.+.+.++... +.+.|.++||.+
T Consensus 157 ~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~vtHd~~ 205 (288)
T PRK13643 157 GILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMD 205 (288)
T ss_pred HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH
Confidence 99975 45555554433 678899999865
No 152
>PRK10908 cell division protein FtsE; Provisional
Probab=99.81 E-value=8.8e-21 Score=152.41 Aligned_cols=149 Identities=14% Similarity=0.071 Sum_probs=91.6
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------------
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------------ 93 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------------ 93 (199)
++++|++++|+.. ++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...
T Consensus 2 l~~~~l~~~~~~~-~~~l~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~ 78 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQG-VTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGK-IWFSGHDITRLKNREVPFLR 78 (222)
T ss_pred EEEEeeEEEecCC-CeEEee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEcccCChhHHHHHH
Confidence 6789999999422 479999 99999999999999999999999999999988665443 33322110
Q ss_pred ccccccc-CCCC-CCCchHH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640 94 VHADIIV-PRGG-ENCVAID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 94 ~~~~~~~-~~~~-~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~- 156 (199)
....... .... .+....+ ...+.+...+. ...+....+..+.+|||||+||++||||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALD---KVGLLDKAKNFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred hheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHH---HcCChhhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence 0001111 1110 0000001 11111111111 1122222344567899999999999999975
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.++... +.+.|.++||...
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~ 199 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDIGL 199 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence 44444444333 5788999998764
No 153
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.81 E-value=1e-20 Score=161.28 Aligned_cols=148 Identities=14% Similarity=0.074 Sum_probs=95.5
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------ccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHA 96 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~ 96 (199)
-++++|++++|++. .+|++ +||++++|+++||+||||||||||+++|+|++.|..+. +..++... ...
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~-is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~-i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNG-LSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGK-ITVLGVPVPARARLARARI 116 (340)
T ss_pred eEEEEEEEEEECCE--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceE-EEECCEECCcchHHHhccE
Confidence 49999999999765 79999 99999999999999999999999999999998776543 33332211 001
Q ss_pred ccc-cCCCCCCCchH-HH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640 97 DII-VPRGGENCVAI-DL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---- 156 (199)
Q Consensus 97 ~~~-~~~~~~~~~~~-~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---- 156 (199)
... ........... +. ..+.+...+ ....++...+....+|||||+||++||||++.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll---~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~l 193 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLL---EFARLESKADARVSDLSGGMKRRLTLARALINDPQL 193 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH---HHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 111 11111111010 10 111111111 12344444455677899999999999999975
Q ss_pred -----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+... -+.++|+++|+.+
T Consensus 194 LiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~ 233 (340)
T PRK13536 194 LILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME 233 (340)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH
Confidence 5555555533 2678899998655
No 154
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4.5e-21 Score=158.66 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=50.0
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~ 84 (199)
++++||+++|++. .++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+.
T Consensus 2 l~~~~l~~~~~~~--~il~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 57 (271)
T PRK13638 2 LATSDLWFRYQDE--PVLKG-LNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGA 57 (271)
T ss_pred eEEEEEEEEcCCc--ccccc-eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccE
Confidence 6789999999754 79999 99999999999999999999999999999988765443
No 155
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=9e-21 Score=154.22 Aligned_cols=148 Identities=11% Similarity=0.039 Sum_probs=92.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------------
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------------ 93 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------------ 93 (199)
++++|+++.|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...
T Consensus 3 l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 3 IQLNGINCFYGAH--QALFD-ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT-LNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEeeEEEECCe--eeEee-eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEecccccccchhhHH
Confidence 6789999999754 79999 99999999999999999999999999999988665443 33332210
Q ss_pred ---cccccc-cCCCCCCCch-HHHH---------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEec
Q psy9640 94 ---VHADII-VPRGGENCVA-IDLI---------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRA 153 (199)
Q Consensus 94 ---~~~~~~-~~~~~~~~~~-~~~~---------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA 153 (199)
...... .......... .+.+ ...+.+.+. ...++...+..+.+|||||+||++||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LS~G~~qrv~lara 155 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLE---RLRLKPYADRFPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 000011 1111111101 1111 111111111 1233333344677899999999999999
Q ss_pred cch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
++. +.+.+.++.. -+.+.|+++||.+.
T Consensus 156 l~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~ 203 (242)
T PRK11124 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEV 203 (242)
T ss_pred HhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH
Confidence 975 4444444432 35778999998763
No 156
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=7.3e-21 Score=156.93 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=51.9
Q ss_pred ccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 21 ILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 21 ~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
.+..-++++|+++.|++. ++|++ +||++.+|++++|+|+||||||||+++|+|.+.+..
T Consensus 7 ~~~~~l~i~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 65 (265)
T PRK10575 7 HSDTTFALRNVSFRVPGR--TLLHP-LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE 65 (265)
T ss_pred CCCceEEEeeEEEEECCE--EEEee-eeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 344458999999999754 79999 999999999999999999999999999999876544
No 157
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.81 E-value=4e-21 Score=149.88 Aligned_cols=139 Identities=12% Similarity=0.096 Sum_probs=87.9
Q ss_pred ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCCC
Q psy9640 27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGEN 106 (199)
Q Consensus 27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~~ 106 (199)
+++|++++|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++......... . ..
T Consensus 1 ~~~~l~~~~~~~--~~l~~-~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~--~-~~- 72 (180)
T cd03214 1 EVENLSVGYGGR--TVLDD-LSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE-ILLDGKDLASLSPK--E-LA- 72 (180)
T ss_pred CeeEEEEEECCe--eeEee-eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCcCCHH--H-HH-
Confidence 478999999764 79999 99999999999999999999999999999987665443 33332211000000 0 00
Q ss_pred CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHhhc
Q psy9640 107 CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHDVC 165 (199)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~ 165 (199)
.....+.+.+ +. +.+....+..+.+|||||+||++||||++. +.+.+.+..
T Consensus 73 -~~i~~~~q~l-~~------~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~ 144 (180)
T cd03214 73 -RKIAYVPQAL-EL------LGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA 144 (180)
T ss_pred -HHHhHHHHHH-HH------cCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 0001111112 11 122222234566899999999999999975 333343333
Q ss_pred cccceeEEEEEeCCCC
Q psy9640 166 KDIRIGKILIQTNKAT 181 (199)
Q Consensus 166 p~~~~~~~~~~~~~~~ 181 (199)
..-..+.|.++|+.+.
T Consensus 145 ~~~~~tiii~sh~~~~ 160 (180)
T cd03214 145 RERGKTVVMVLHDLNL 160 (180)
T ss_pred HhcCCEEEEEeCCHHH
Confidence 3214577999998664
No 158
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1e-20 Score=156.37 Aligned_cols=152 Identities=19% Similarity=0.136 Sum_probs=95.5
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~ 95 (199)
-++++|+++.|++..++++++ +||++++|++++|+||||||||||+++|+|.+.+..+ .+..++.... .
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~-isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKD-VSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG-EIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred eEEEEEEEEEcCCCCCcceee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHhh
Confidence 488999999997643468999 9999999999999999999999999999998876543 3333332110 0
Q ss_pred cccccCCC---CCCC--------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640 96 ADIIVPRG---GENC--------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 96 ~~~~~~~~---~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
........ .... ...+...+.+...+. ...+....+..+.+|||||+||++||||++.
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALK---QVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHH---HcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 00000000 0000 000111111111111 1222223344677899999999999999975
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+....-+.+.|.++|+.+.
T Consensus 162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~ 205 (269)
T PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE 205 (269)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH
Confidence 4555555544335778999998764
No 159
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.81 E-value=1.1e-20 Score=152.34 Aligned_cols=151 Identities=14% Similarity=0.071 Sum_probs=93.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------cc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VH 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~ 95 (199)
-++++|+++.|++. +++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++... ..
T Consensus 7 ~i~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 7 LLQLQNVGYLAGDA--KILNN-ISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGT-LLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred eEEEeccEEeeCCc--eeeec-cEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCe-EEECCEEcCcCCHHHHHhc
Confidence 48899999999754 79999 99999999999999999999999999999987655433 32222110 00
Q ss_pred cccccCC-CCCCCchHHHHH------------HHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEEeccch-----
Q psy9640 96 ADIIVPR-GGENCVAIDLIV------------QHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 96 ~~~~~~~-~~~~~~~~~~~~------------~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
....... ........+.+. ..+.+.+. .+.+. ...+..+.+|||||+||++||||++.
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLE---RFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVL 159 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHH---HcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 0111111 001000001110 01111111 11222 12244677899999999999999975
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+.+.+.+....-+.+.|.++||.+.+
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~ 201 (225)
T PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEI 201 (225)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHH
Confidence 44445555443356789999987643
No 160
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.81 E-value=1.1e-20 Score=152.35 Aligned_cols=152 Identities=11% Similarity=0.035 Sum_probs=93.6
Q ss_pred Ccccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640 25 GRDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------- 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------- 93 (199)
-++++|++++|++.. .+++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+. +..++...
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~-~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTG-VELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGE-VSLVGQPLHQMDEEARA 83 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEec-cEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCee-EEECCEEcccCCHHHHH
Confidence 378999999997532 258999 99999999999999999999999999999988765443 33332110
Q ss_pred ----cccccccCC-CCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEec
Q psy9640 94 ----VHADIIVPR-GGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRA 153 (199)
Q Consensus 94 ----~~~~~~~~~-~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA 153 (199)
......... ..... ...+.+ .+.+.+.+. ...+....+..+..|||||+||++||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLE---QLGLGKRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCHhHhhCChhhCCHHHHHHHHHHHH
Confidence 001111111 11000 011111 111111111 1122222334567899999999999999
Q ss_pred cch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
++. +.+.+.+.....+.++|+++||.+.
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 209 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL 209 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 975 4444444434335688999998763
No 161
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=1.4e-20 Score=143.21 Aligned_cols=138 Identities=18% Similarity=0.222 Sum_probs=92.2
Q ss_pred ccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch--------hccccc---------
Q psy9640 35 YVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--------YRVHAD--------- 97 (199)
Q Consensus 35 y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~--------~~~~~~--------- 97 (199)
|.....++|++ +||.+.+|++++|.||||||||||+|.++.+..+..+.+...+.- |+....
T Consensus 11 y~a~~a~il~~-isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 11 YLAGDAKILNN-ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred hhcCCCeeecc-eeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 43334589999 999999999999999999999999999999888776555433211 111100
Q ss_pred -------cccCCCCCC-CchHHHHHHHHHHHHhcCceeecCCc-eeeecceecCCeeeeeeEEeccch------------
Q psy9640 98 -------IIVPRGGEN-CVAIDLIVQHIHSQLQAGVSVDMPQG-YTYEGKRCAVSKICGVSILRAGET------------ 156 (199)
Q Consensus 98 -------~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~g~~lSgGq~QrvaiaRA~~~------------ 156 (199)
+.++....| ..+.+...+.+ . ...+|.. +......||||++||+||+|-+..
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~ll-a------r~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts 162 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLL-A------RFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS 162 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHH-H------HcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence 111111111 11222222222 2 2345553 344667899999999999998853
Q ss_pred ---------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ---------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ---------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
++.-+++...+-++..+-||||+.
T Consensus 163 ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d 195 (223)
T COG4619 163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDKD 195 (223)
T ss_pred hcChhhHHHHHHHHHHHhhhhceEEEEEecChH
Confidence 677778888666999999999765
No 162
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.81 E-value=7.8e-21 Score=156.42 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=49.5
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
-++++||++.|++. +++++ +||++.+|++++|+|+||||||||+++|+|.+.+.
T Consensus 4 ~l~~~nl~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~ 57 (262)
T PRK09984 4 IIRVEKLAKTFNQH--QALHA-VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGD 57 (262)
T ss_pred EEEEeeEEEEeCCe--EEEec-ceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 37899999999754 79999 99999999999999999999999999999998764
No 163
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.81 E-value=1.1e-20 Score=155.22 Aligned_cols=56 Identities=25% Similarity=0.246 Sum_probs=50.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
-++++|+++.|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 6 ~l~~~~l~~~~~~~--~il~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 61 (258)
T PRK11701 6 LLSVRGLTKLYGPR--KGCRD-VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG 61 (258)
T ss_pred eEEEeeeEEEcCCc--eeeee-eeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 38899999999764 79999 9999999999999999999999999999998876543
No 164
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=1.6e-20 Score=148.82 Aligned_cols=149 Identities=14% Similarity=0.084 Sum_probs=92.0
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------ccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------HAD 97 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------~~~ 97 (199)
++++|++++|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++.... ...
T Consensus 2 l~~~~l~~~~~~~--~il~~-~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHDQ--PLLQQ-ISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE-ILFERQSIKKDLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCCe--eEEee-eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCee-EEECCCccccCHHHHHhheE
Confidence 5789999999764 79999 99999999999999999999999999999988765443 333332110 000
Q ss_pred cccCCCCCC-Cch-HHHHHH---------HHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------
Q psy9640 98 IIVPRGGEN-CVA-IDLIVQ---------HIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------- 156 (199)
Q Consensus 98 ~~~~~~~~~-~~~-~~~~~~---------~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------- 156 (199)
......... ... .+.+.. .+.+.+. ...++...+....+|||||+||++||||+..
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP 154 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCR---LFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEP 154 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHH---HcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 111110010 001 111110 1111111 1122222233456899999999999999975
Q ss_pred -----------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 -----------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 -----------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+.+.+.+... .+.+.|.++|+...+
T Consensus 155 ~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~ 190 (200)
T PRK13540 155 LVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLPL 190 (200)
T ss_pred CcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchhc
Confidence 4444444322 256789999987754
No 165
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=6.8e-21 Score=158.63 Aligned_cols=151 Identities=12% Similarity=0.077 Sum_probs=95.0
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc----------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------- 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------- 94 (199)
-++++|++++|++. ++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~-vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~-i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKG-ININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR-ILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred eEEEEeEEEEeCCC-Ceeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccE-EEECCEECCCCcchHHHHH
Confidence 37899999999632 379999 99999999999999999999999999999988765433 333322110
Q ss_pred -ccccccCCC---CCCCchHHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640 95 -HADIIVPRG---GENCVAIDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 95 -~~~~~~~~~---~~~~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~ 156 (199)
......... .......+. ..+.+...+. .+.+....+..+.+|||||+||++||||++.
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LS~G~~qrl~laraL~~ 158 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALK---RTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 158 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHH---HCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 001111110 000000011 1111111111 1223233345677999999999999999975
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.....+.++|+++||.+.
T Consensus 159 ~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~ 204 (283)
T PRK13636 159 EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI 204 (283)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 4555655555446788999997653
No 166
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.3e-20 Score=147.04 Aligned_cols=137 Identities=7% Similarity=-0.018 Sum_probs=88.1
Q ss_pred Ccccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC-CCeeeeecccchhcc-----cc
Q psy9640 25 GRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN-VPWVTLLSMDSFYRV-----HA 96 (199)
Q Consensus 25 ~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~-~~~~~~i~~d~~~~~-----~~ 96 (199)
.++++|+++.|++. .++++++ +||++++|++++|+|+||||||||+++|+|... ++..|.+..++.... ..
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNN-ISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEc-cEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence 37899999999751 2479999 999999999999999999999999999999753 244454444432110 01
Q ss_pred ccccCC-CCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-------------------
Q psy9640 97 DIIVPR-GGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------------------- 156 (199)
Q Consensus 97 ~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------------------- 156 (199)
...... ....... +.+.+..... . .+|||||+||++||||++.
T Consensus 82 ~~~~q~~~~~~~~t---v~~~l~~~~~----~----------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~ 144 (192)
T cd03232 82 GYVEQQDVHSPNLT---VREALRFSAL----L----------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA 144 (192)
T ss_pred EEecccCccccCCc---HHHHHHHHHH----H----------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHH
Confidence 111111 0111111 1111200000 0 0799999999999999976
Q ss_pred --hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 --MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 --~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+... .+.+.|.++|+.+
T Consensus 145 ~~l~~~l~~~~~-~~~tiiivtH~~~ 169 (192)
T cd03232 145 YNIVRFLKKLAD-SGQAILCTIHQPS 169 (192)
T ss_pred HHHHHHHHHHHH-cCCEEEEEEcCCh
Confidence 4455554433 2678899999865
No 167
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=6.5e-21 Score=158.48 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=94.8
Q ss_pred Ccccccceeecccc----ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc------
Q psy9640 25 GRDLEGVIKQYVNM----VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV------ 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~----~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~------ 94 (199)
-++++|++++|++. .+++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDD-VNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGK-VYVDGLDTSDEENLW 81 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEeccccccHH
Confidence 37899999999742 2479999 99999999999999999999999999999988765443 333321110
Q ss_pred ----ccccccCCC---CCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEec
Q psy9640 95 ----HADIIVPRG---GENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRA 153 (199)
Q Consensus 95 ----~~~~~~~~~---~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA 153 (199)
......... ..... ......+.+...+. ...+....+..+.+|||||+||++||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLK---KVGMYEYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHH---HCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 001100000 00000 00001111111111 1223333344677999999999999999
Q ss_pred cch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
++. +.+.+.++....+.+.|.++||.+.
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~ 207 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE 207 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH
Confidence 975 4445555444346788999998664
No 168
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.6e-20 Score=153.53 Aligned_cols=53 Identities=11% Similarity=0.229 Sum_probs=48.9
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.++++|++++|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 55 (250)
T PRK14247 3 KIEIRDLKVSFGQV--EVLDG-VNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL 55 (250)
T ss_pred eEEEEeeEEEECCe--eeeec-ceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 47899999999764 79999 9999999999999999999999999999999864
No 169
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.3e-20 Score=159.49 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=51.7
Q ss_pred cCcccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 24 RGRDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
.-|+++|+++.|+.. .+++|++ +||++++|++++|+|+||||||||+++|+|++.+..+
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~-vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G 81 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNN-ISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG 81 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 358999999999642 2469999 9999999999999999999999999999998876544
No 170
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.2e-20 Score=149.82 Aligned_cols=119 Identities=8% Similarity=-0.044 Sum_probs=77.2
Q ss_pred cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccchhccc------
Q psy9640 26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRVH------ 95 (199)
Q Consensus 26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~~~~------ 95 (199)
+.++||+|.|+.. .++++++ ++|++++|++++|+|+||||||||+++|+|.+.+ +..|.+..++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~-~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKD-FSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeee-EEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 6789999999742 4679999 9999999999999999999999999999999873 344444444321110
Q ss_pred --cccccCCC-CCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640 96 --ADIIVPRG-GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 96 --~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~ 156 (199)
........ ...... +.+.+..... .. .+.....|||||+||++||||++.
T Consensus 83 ~~i~~~~q~~~~~~~~t---v~~~l~~~~~----~~----~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLT---VRETLDFALR----CK----GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCc---HHHHHhhhhh----hc----cccchhhCCHHHHHHHHHHHHHhh
Confidence 00111110 111111 1112210000 00 233456899999999999999975
No 171
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.3e-20 Score=156.02 Aligned_cols=153 Identities=17% Similarity=0.112 Sum_probs=93.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~ 95 (199)
-++++|+++.|++..++++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++.... .
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~-isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKN-VSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE-IKIDGITISKENLKEIRKK 84 (271)
T ss_pred EEEEEeEEEEcCCCCccceee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEecCcCCHHHHhcc
Confidence 488999999996433579999 99999999999999999999999999999988765433 333221110 0
Q ss_pred ccccc-CC--CCCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640 96 ADIIV-PR--GGENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 96 ~~~~~-~~--~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
..... .. ...... ..+.....+.+.+. ...+....+..+.+|||||+||++||||++.
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAK---KVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHH---HcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 00000 00 000000 00001011111111 1122222344667999999999999999975
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+.+.+.+....-+.+.|.++|+.+.+
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 206 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA 206 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH
Confidence 44445444332236789999987643
No 172
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.80 E-value=1.5e-20 Score=154.42 Aligned_cols=61 Identities=20% Similarity=0.367 Sum_probs=53.0
Q ss_pred cccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 22 LARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 22 ~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
....++++|++++|++....++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 76 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKH-VKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDG 76 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeE-EEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCC
Confidence 345699999999997643479999 9999999999999999999999999999998765443
No 173
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.80 E-value=5.5e-21 Score=146.97 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=83.8
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE 105 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~ 105 (199)
++++|+++.|++. +++++ ++|++++|++++|+|+||||||||+++|+|.+.+..+. +..++.....
T Consensus 1 l~~~~l~~~~~~~--~vl~~-i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~---------- 66 (163)
T cd03216 1 LELRGITKRFGGV--KALDG-VSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGKEVSF---------- 66 (163)
T ss_pred CEEEEEEEEECCe--EEEee-eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEECCc----------
Confidence 4689999999765 79999 99999999999999999999999999999987665433 3333211100
Q ss_pred CCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHhh
Q psy9640 106 NCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHDV 164 (199)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~ 164 (199)
..... .. .. . .++-. +|||||+||++||||+.. +.+.+.+.
T Consensus 67 --~~~~~---~~----~~-~-----i~~~~---qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 128 (163)
T cd03216 67 --ASPRD---AR----RA-G-----IAMVY---QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRL 128 (163)
T ss_pred --CCHHH---HH----hc-C-----eEEEE---ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 00000 01 00 0 11111 399999999999999975 34444444
Q ss_pred ccccceeEEEEEeCCC
Q psy9640 165 CKDIRIGKILIQTNKA 180 (199)
Q Consensus 165 ~p~~~~~~~~~~~~~~ 180 (199)
... +.+.|.++||.+
T Consensus 129 ~~~-~~tiii~sh~~~ 143 (163)
T cd03216 129 RAQ-GVAVIFISHRLD 143 (163)
T ss_pred HHC-CCEEEEEeCCHH
Confidence 322 577899999866
No 174
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.1e-20 Score=160.56 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=95.6
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC----Ceeeeecccchhcc-----
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV----PWVTLLSMDSFYRV----- 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~----~~~~~i~~d~~~~~----- 94 (199)
..++++|++++|.+...++|++ +||+|++|+++||+|+||||||||+++|+|...+ +..|.+..|+....
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~-is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHD-LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred ceEEEEeeEEEecCCCceeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 3589999999997544579999 9999999999999999999999999999998753 23344444332211
Q ss_pred ------ccc-cccCCCCCCCc--------------hHHHHHH-HHHHHHhcCce-eecCCceeeecceecCCeeeeeeEE
Q psy9640 95 ------HAD-IIVPRGGENCV--------------AIDLIVQ-HIHSQLQAGVS-VDMPQGYTYEGKRCAVSKICGVSIL 151 (199)
Q Consensus 95 ------~~~-~~~~~~~~~~~--------------~~~~~~~-~l~~~~~~~~~-~~~~~~~~~~g~~lSgGq~Qrvaia 151 (199)
... .+......+.. ..+...+ .....+..... ..+....+..+..|||||+||++||
T Consensus 158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237 (329)
T ss_pred hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence 000 00110011100 0011111 01111111000 0111123446889999999999999
Q ss_pred eccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
||++. +.+.+.+...+ .+.|+|+|+.+.
T Consensus 238 RAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~--~Tii~iTH~l~~ 286 (329)
T PRK14257 238 RAIALEPEVLLMDEPTSALDPIATAKIEELILELKKK--YSIIIVTHSMAQ 286 (329)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC--CEEEEEeCCHHH
Confidence 99975 55666665543 577999997764
No 175
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.80 E-value=6e-21 Score=171.38 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=95.1
Q ss_pred Ccccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC----eeeeecccchhcc----
Q psy9640 25 GRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP----WVTLLSMDSFYRV---- 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~----~~~~i~~d~~~~~---- 94 (199)
-++++|++++|+.. .+++|++ +||++.+|++++|+||||||||||+++|+|.+.+. ..|.+..++....
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~-isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVND-VSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCCCCceeeeec-eEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 38899999999631 2479999 99999999999999999999999999999998752 3444433322100
Q ss_pred ---------ccccccCCC---CCCCchH-H---------------HHHHHHHHHHhcCceeecCC---ceeeecceecCC
Q psy9640 95 ---------HADIIVPRG---GENCVAI-D---------------LIVQHIHSQLQAGVSVDMPQ---GYTYEGKRCAVS 143 (199)
Q Consensus 95 ---------~~~~~~~~~---~~~~~~~-~---------------~~~~~l~~~~~~~~~~~~~~---~~~~~g~~lSgG 143 (199)
......... ....... + ...+.+.+.+. .+.++. ..+..+.+||||
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~~~~LSgG 160 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLD---RVGIRQAAKRLTDYPHQLSGG 160 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HCCCCChHHHHhhCCcccCHH
Confidence 001111110 0000000 0 01111111111 122221 124457799999
Q ss_pred eeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 144 KICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 144 q~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
|+|||+||||++. +.+.+.++....+.++|.|+||.+.
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 219 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSI 219 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH
Confidence 9999999999975 4555555544346788999998763
No 176
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.80 E-value=1.8e-20 Score=152.26 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=51.4
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC-CCeeeeecccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN-VPWVTLLSMDS 90 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~-~~~~~~i~~d~ 90 (199)
++++|+++.|++. ++|++ +||++++|++++|+||||||||||+++|+|.+. ++..|.+..++
T Consensus 1 l~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g 63 (243)
T TIGR01978 1 LKIKDLHVSVEDK--EILKG-VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG 63 (243)
T ss_pred CeEeeEEEEECCE--EEEec-cceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECC
Confidence 5789999999754 79999 999999999999999999999999999999852 34444444443
No 177
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=1.8e-20 Score=149.99 Aligned_cols=150 Identities=11% Similarity=0.033 Sum_probs=94.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc------cccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV------HADI 98 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~------~~~~ 98 (199)
-++++|++++|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++.... ....
T Consensus 11 ~l~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGP-LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQ-IQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred eEEEeeEEEecCCc--eeeec-ceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCee-EEECCEEccchhhhhceEE
Confidence 48899999999764 69999 99999999999999999999999999999988765543 333321110 0011
Q ss_pred ccCC-CCCCC-chHHHHH-----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------
Q psy9640 99 IVPR-GGENC-VAIDLIV-----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------- 156 (199)
Q Consensus 99 ~~~~-~~~~~-~~~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------- 156 (199)
.... ..... ...+.+. +.+...+ ....++...+.....|||||+||++||||++.
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l---~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSAL---AIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE 163 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHH---HHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1111 11100 0111110 0110111 11233333455667899999999999999975
Q ss_pred ------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 ------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 ------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+.+.+.+.... +.+.|+++||.+..
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~ 200 (214)
T PRK13543 164 PYANLDLEGITLVNRMISAHLRG-GGAALVTTHGAYAA 200 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecChhhh
Confidence 44444444332 56789999988754
No 178
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2e-20 Score=154.50 Aligned_cols=67 Identities=16% Similarity=0.108 Sum_probs=55.8
Q ss_pred ccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC----Ceeeeecccc
Q psy9640 21 ILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV----PWVTLLSMDS 90 (199)
Q Consensus 21 ~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~----~~~~~i~~d~ 90 (199)
.++..|+++||++.|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.+ +..|.+..++
T Consensus 15 ~~~~~l~~~nl~~~~~~~--~il~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 15 ATEIKMRARDVSVFYGEK--QALFD-VDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred CCCceEEEEeEEEEECCE--EEEEE-EEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 344579999999999754 79999 9999999999999999999999999999999875 3445454443
No 179
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=8.8e-21 Score=158.33 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=51.8
Q ss_pred cCcccccceeeccccc---cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 24 RGRDLEGVIKQYVNMV---KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~---~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
..++++|++++|++.. .++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 66 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNN-TSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG 66 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeee-eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 5689999999997542 359999 9999999999999999999999999999998876543
No 180
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.80 E-value=1.5e-20 Score=151.71 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=91.3
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------cc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------VH 95 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~~ 95 (199)
++++||++.|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++... ..
T Consensus 1 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 76 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRG-VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGS-IRLDGEDITKLPPHERARAG 76 (230)
T ss_pred CEEEeEEEEeCCe--EEecc-eeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEECCCCCHHHHHHhC
Confidence 5689999999764 79999 99999999999999999999999999999988765443 33332110 00
Q ss_pred ccccc-CCCCCCCchH-HHHHHH-----------HHHHHhcCceee-cCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 96 ADIIV-PRGGENCVAI-DLIVQH-----------IHSQLQAGVSVD-MPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 96 ~~~~~-~~~~~~~~~~-~~~~~~-----------l~~~~~~~~~~~-~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
..... .......... +.+... ....+. ... +....+....+|||||+||++||||+..
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~---~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~il 153 (230)
T TIGR03410 77 IAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYE---LFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL 153 (230)
T ss_pred eEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHH---HHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 01111 1111111011 111000 000000 011 1122244567899999999999999975
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+....-+.+.|.++||.+.
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 194 (230)
T TIGR03410 154 LLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF 194 (230)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence 4444444433235778999998763
No 181
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.2e-20 Score=156.69 Aligned_cols=151 Identities=11% Similarity=0.025 Sum_probs=93.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~ 95 (199)
-++++|++++|++. ..++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+. +..++.... .
T Consensus 3 ~l~~~~l~~~~~~~-~~~l~~-vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~ 79 (277)
T PRK13652 3 LIETRDLCYSYSGS-KEALNN-INFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGS-VLIRGEPITKENIREVRKF 79 (277)
T ss_pred eEEEEEEEEEeCCC-CceeeE-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCcCCHHHHHhh
Confidence 37789999999643 269999 99999999999999999999999999999988765443 333322110 0
Q ss_pred cccccCC---CCCCCchHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640 96 ADIIVPR---GGENCVAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 96 ~~~~~~~---~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
....... ...+....+.+ .+.+...+. .+.+....+..+..|||||+||++||||+..
T Consensus 80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p 156 (277)
T PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALH---MLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEP 156 (277)
T ss_pred eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHH---HCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 0110000 00000000111 011111111 1223333344677999999999999999975
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+....-+.++|.++||.+.
T Consensus 157 ~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~ 200 (277)
T PRK13652 157 QVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL 200 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 4444444444335778999998653
No 182
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.8e-20 Score=153.75 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=49.6
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++|++++|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 3 l~~~~l~~~~~~~--~il~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 57 (255)
T PRK11231 3 LRTENLTVGYGTK--RILND-LSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSG 57 (255)
T ss_pred EEEEeEEEEECCE--EEEee-eeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 6789999999754 79999 9999999999999999999999999999998866543
No 183
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.7e-20 Score=153.73 Aligned_cols=152 Identities=11% Similarity=0.090 Sum_probs=94.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC----eeeeecccchhcc------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP----WVTLLSMDSFYRV------ 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~----~~~~i~~d~~~~~------ 94 (199)
-++++|+++.|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+. ..|.+..++....
T Consensus 7 ~l~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTDF--KALNN-INIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCCc--eeecc-eeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 48999999999754 79999 99999999999999999999999999999998753 2344433332110
Q ss_pred -----cccccc-CCCCCCCchHHHH---------------HHHHHHHHhcCcee-ecCCceeeecceecCCeeeeeeEEe
Q psy9640 95 -----HADIIV-PRGGENCVAIDLI---------------VQHIHSQLQAGVSV-DMPQGYTYEGKRCAVSKICGVSILR 152 (199)
Q Consensus 95 -----~~~~~~-~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~-~~~~~~~~~g~~lSgGq~QrvaiaR 152 (199)
...... ..........+.+ .+.+...+...... .++..+++.+.+|||||+||++|||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence 000100 0000100000100 11111111100000 1122345567899999999999999
Q ss_pred ccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
|++. +.+.+.+... +.++|.++||...
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~sH~~~~ 211 (254)
T PRK14273 164 TLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVTHNMQQ 211 (254)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHH
Confidence 9975 5555555532 4678999997763
No 184
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=2.1e-20 Score=153.16 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=50.4
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
-++++|+++.|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 60 (255)
T PRK11300 5 LLSVSGLMMRFGGL--LAVNN-VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG 60 (255)
T ss_pred eEEEeeEEEEECCE--EEEEe-eeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence 38899999999754 79999 9999999999999999999999999999998866543
No 185
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.80 E-value=1.9e-20 Score=152.17 Aligned_cols=148 Identities=15% Similarity=0.127 Sum_probs=92.4
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-----------
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV----------- 94 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~----------- 94 (199)
++++|++++|++. +++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+. +..++....
T Consensus 2 l~~~~l~~~~~~~--~il~~-~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 77 (240)
T PRK09493 2 IEFKNVSKHFGPT--QVLHN-IDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGD-LIVDGLKVNDPKVDERLIRQ 77 (240)
T ss_pred EEEEeEEEEECCe--EEeee-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCcCChhHHHHhh
Confidence 5789999999754 79999 99999999999999999999999999999988665443 333322110
Q ss_pred ccccccCC-CCCCCch-HHH---------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640 95 HADIIVPR-GGENCVA-IDL---------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 95 ~~~~~~~~-~~~~~~~-~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~- 156 (199)
........ ....... .+. ..+.+.+.+. ...+....+..+..|||||+||++||||++.
T Consensus 78 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 78 EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLA---KVGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred ceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHH---HcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 00111111 1110000 011 1111111111 1223222344567899999999999999975
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+... -+.+.|.++||.+.
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~ 198 (240)
T PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIGF 198 (240)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH
Confidence 4444444432 25788999998764
No 186
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.80 E-value=2.5e-20 Score=153.02 Aligned_cols=58 Identities=21% Similarity=0.100 Sum_probs=52.0
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++.++++|+++.|++. +++++ ++|++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 3 ~~~l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 60 (257)
T PRK10619 3 ENKLNVIDLHKRYGEH--EVLKG-VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEG 60 (257)
T ss_pred CccEEEeeeEEEECCE--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 4568999999999754 79999 9999999999999999999999999999998876543
No 187
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=4.2e-20 Score=141.50 Aligned_cols=151 Identities=19% Similarity=0.156 Sum_probs=101.6
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeee--cccchhcccccc---
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLL--SMDSFYRVHADI--- 98 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i--~~d~~~~~~~~~--- 98 (199)
.-+++.++|+.|... ..+++ |||.+-+||+++|+|+||||||||+++|++.+.|..+.+. ..++..+....+
T Consensus 5 PLL~V~~lsk~Yg~~--~gc~~-vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEa 81 (258)
T COG4107 5 PLLSVSGLSKLYGPG--KGCRD-VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81 (258)
T ss_pred cceeehhhhhhhCCC--cCccc-cceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchH
Confidence 357899999999776 67899 9999999999999999999999999999999987644332 212211110000
Q ss_pred ----c--cCCC--CCCC------------------ch-----HHHHHHHHHHHHhcCceeecCC-ceeeecceecCCeee
Q psy9640 99 ----I--VPRG--GENC------------------VA-----IDLIVQHIHSQLQAGVSVDMPQ-GYTYEGKRCAVSKIC 146 (199)
Q Consensus 99 ----~--~~~~--~~~~------------------~~-----~~~~~~~l~~~~~~~~~~~~~~-~~~~~g~~lSgGq~Q 146 (199)
. .+.+ ..|+ .+ +..+......++. .++.+. ..+-.|..+||||+|
T Consensus 82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~---~VEI~~~RiDD~PrtFSGGMqQ 158 (258)
T COG4107 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLE---EVEIDLDRIDDLPRTFSGGMQQ 158 (258)
T ss_pred HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHH---hcccCcccccCcccccchHHHH
Confidence 0 0000 0110 01 1122222223333 233333 234468899999999
Q ss_pred eeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 147 GVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 147 rvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|+.|||-+.. +.+.+..+..++++++|.++||-+
T Consensus 159 RLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~ 213 (258)
T COG4107 159 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA 213 (258)
T ss_pred HHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH
Confidence 9999999965 667778888899999999999854
No 188
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.80 E-value=2.1e-20 Score=153.28 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=92.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC---eeeeecccchhcc-------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP---WVTLLSMDSFYRV------- 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~---~~~~i~~d~~~~~------- 94 (199)
.++++|++++| + +++|++ +||++.+|++++|+|+||||||||+++|+|.+.+. ..|.+..++....
T Consensus 4 ~l~~~~l~~~~-~--~~il~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHG-VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEEeCeEEEe-c--cceecc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 47899999999 3 379999 99999999999999999999999999999998761 3343433332110
Q ss_pred ccccccCCC--CCCC-chH-HHHH------------HHHHHHHhcCceeecCC---ceeeecceecCCeeeeeeEEeccc
Q psy9640 95 HADIIVPRG--GENC-VAI-DLIV------------QHIHSQLQAGVSVDMPQ---GYTYEGKRCAVSKICGVSILRAGE 155 (199)
Q Consensus 95 ~~~~~~~~~--~~~~-~~~-~~~~------------~~l~~~~~~~~~~~~~~---~~~~~g~~lSgGq~QrvaiaRA~~ 155 (199)
......... ...+ ... +.+. +.+.+.+. .+.+.. ..+..+.+|||||+||++||||++
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~ 156 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALE---AVGLENAARVLKLYPFEMSGGMLQRMMIALALL 156 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHH---HcCCCChhhhhhcCCcccCHHHHHHHHHHHHHh
Confidence 001111110 0110 000 0000 01111111 112221 124456789999999999999996
Q ss_pred h---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 156 T---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
. +.+.+.+...+-+.+.|.++|+.+.
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~ 203 (254)
T PRK10418 157 CEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV 203 (254)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence 5 4455555544446788999997653
No 189
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.80 E-value=2.8e-20 Score=149.76 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=49.5
Q ss_pred cccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++||+++|++.. .+++++ +||++++|++++|+||||||||||+++|+|.+.+..+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 60 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDD-VSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60 (228)
T ss_pred eEEEeeeEeccCCCcceeeecC-ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 57899999996531 268999 9999999999999999999999999999998866543
No 190
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.80 E-value=3.1e-20 Score=153.44 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=50.6
Q ss_pred Ccccccceeecccc-------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNM-------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~-------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
-++++||+++|+.. ..++|++ +||++++|++++|+||||||||||+++|+|.+.+..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~-vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G 68 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKP-LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG 68 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeee-eeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 37899999999631 2469999 9999999999999999999999999999999876544
No 191
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.80 E-value=2e-20 Score=153.76 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=49.7
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++|++++|++. .+|++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 3 l~~~~l~~~~~~~--~il~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G 57 (258)
T PRK13548 3 LEARNLSVRLGGR--TLLDD-VSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSG 57 (258)
T ss_pred EEEEeEEEEeCCe--eeeee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 6789999999764 79999 9999999999999999999999999999998866543
No 192
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.9e-20 Score=156.25 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=92.5
Q ss_pred cccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640 26 RDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------- 94 (199)
Q Consensus 26 i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------- 94 (199)
++++|+++.|++. .++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~-vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDN-ISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGT-ITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEcCCCCCccccceee-eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEECccccccchH
Confidence 6789999999642 1469999 99999999999999999999999999999988765433 333332110
Q ss_pred -----ccccccCC---CCCCCchHHHH--------------HHHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEE
Q psy9640 95 -----HADIIVPR---GGENCVAIDLI--------------VQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSIL 151 (199)
Q Consensus 95 -----~~~~~~~~---~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~Qrvaia 151 (199)
........ ........+.+ .+.+.+.+. .+.+. ...+..+.+|||||+||++||
T Consensus 81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~~LSgGq~qrl~la 157 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLK---KVGLSEDLISKSPFELSGGQMRRVAIA 157 (287)
T ss_pred HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCChhHhhCCcccCCHHHHHHHHHH
Confidence 00111110 00000000111 111111111 12332 122445678999999999999
Q ss_pred eccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
||++. +.+.+.++. +.+.++|.++||.+
T Consensus 158 ral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~-~~g~tvlivsH~~~ 206 (287)
T PRK13641 158 GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ-KAGHTVILVTHNMD 206 (287)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHH
Confidence 99975 444454443 33688899999765
No 193
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.80 E-value=3.2e-20 Score=151.50 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=48.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
++++||+++|++. .++++ +||++++|++++|+|+||||||||+++|+|.+.+.
T Consensus 2 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~ 54 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKN-INLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV 54 (247)
T ss_pred EEEEEEEEEECCe--eeecc-eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 6789999999764 69999 99999999999999999999999999999998764
No 194
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=2.4e-20 Score=161.86 Aligned_cols=149 Identities=13% Similarity=0.066 Sum_probs=90.9
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------- 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------- 93 (199)
.++++++...|... .++++ +||++++|++++|+||||||||||+++|+|++.|..+. +..++...
T Consensus 28 ~~~~~~~~~~~~~~--~~L~~-isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~-I~i~G~~i~~~~~~~l~~~ 103 (400)
T PRK10070 28 GLSKEQILEKTGLS--LGVKD-ASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQ-VLIDGVDIAKISDAELREV 103 (400)
T ss_pred cccHHHHHhhcCCe--EEEEe-EEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCE-EEECCEECCcCCHHHHHHH
Confidence 45555555655433 58999 99999999999999999999999999999998765443 33322110
Q ss_pred --cccccccCC-CCC-CCchHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640 94 --VHADIIVPR-GGE-NCVAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE 155 (199)
Q Consensus 94 --~~~~~~~~~-~~~-~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~ 155 (199)
......... ... +....+.+ .+.+.+.+. .+.+....+..+.+|||||+|||+||||++
T Consensus 104 ~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~---~~gL~~~~~~~~~~LSgGq~QRv~LArAL~ 180 (400)
T PRK10070 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR---QVGLENYAHSYPDELSGGMRQRVGLARALA 180 (400)
T ss_pred HhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCChhhhcCcccCCHHHHHHHHHHHHHh
Confidence 001111111 111 10000111 111111111 123333334567799999999999999997
Q ss_pred h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
. +.+.+.+.....+.+.|+++||.+
T Consensus 181 ~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 181 INPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 6 555666655444677899999764
No 195
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.2e-20 Score=154.08 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=51.6
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
...|+++|++++|++. .+|++ +||++.+|++++|+|+||||||||+++|+|.+.+..+
T Consensus 5 ~~~l~i~~l~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 62 (265)
T PRK10253 5 VARLRGEQLTLGYGKY--TVAEN-LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHG 62 (265)
T ss_pred ccEEEEEEEEEEECCE--EEeee-cceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 3468899999999754 79999 9999999999999999999999999999998866543
No 196
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4e-20 Score=151.90 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=53.4
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC----eeeeecccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP----WVTLLSMDS 90 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~----~~~~i~~d~ 90 (199)
.++++|++++|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.++ ..|.+..++
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVED-VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEECCE--eeeee-eeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 58899999999764 79999 99999999999999999999999999999988641 345554443
No 197
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=3.7e-20 Score=142.42 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=51.8
Q ss_pred cccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeec
Q psy9640 22 LARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLS 87 (199)
Q Consensus 22 ~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~ 87 (199)
.+..++++|+.++|... .+|++ ||++..+|+++.|+|.|||||||+++||- ++..+..|.+.
T Consensus 3 ~~~~l~v~dlHK~~G~~--eVLKG-vSL~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~P~~G~I~ 64 (256)
T COG4598 3 AENALEVEDLHKRYGEH--EVLKG-VSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSAGSIR 64 (256)
T ss_pred cccceehhHHHhhcccc--hhhcc-eeeecCCCCEEEEecCCCCchhHHHHHHH-hhcCCCCceEE
Confidence 34568999999999887 79999 99999999999999999999999999984 55444444443
No 198
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.8e-20 Score=153.08 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=48.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
-++++|++++|++. .+|++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus 13 ~l~i~nl~~~~~~~--~il~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 13 IISLQNVTISYGTF--EAVKN-VFCDIPRGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred eEEEEeEEEEECCE--EEEcc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 48999999999764 79999 999999999999999999999999999999876
No 199
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.79 E-value=6.2e-20 Score=144.87 Aligned_cols=137 Identities=8% Similarity=-0.057 Sum_probs=88.0
Q ss_pred Ccccccceeecccc----ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc--CCCeeeeecccchhccc---
Q psy9640 25 GRDLEGVIKQYVNM----VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL--NVPWVTLLSMDSFYRVH--- 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~----~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l--~~~~~~~i~~d~~~~~~--- 95 (199)
.++++|++++|++. .++++++ +||++++|++++|+|+||||||||+++|+|.+ .+.. |.+..++.....
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~-~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~-G~i~~~g~~~~~~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKN-VSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS-GEVLINGRPLDKRSF 80 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceec-ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCc-eEEEECCEeCchHhh
Confidence 37899999999752 2479999 99999999999999999999999999999988 5544 444444321110
Q ss_pred ---cccccCCCCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------------
Q psy9640 96 ---ADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------- 156 (199)
Q Consensus 96 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------- 156 (199)
...........+ ...+.+.+..... . .+|||||+||++||||++.
T Consensus 81 ~~~i~~~~q~~~~~~--~~t~~~~i~~~~~----~----------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~ 144 (194)
T cd03213 81 RKIIGYVPQDDILHP--TLTVRETLMFAAK----L----------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDS 144 (194)
T ss_pred hheEEEccCcccCCC--CCcHHHHHHHHHH----h----------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence 011111100000 0011122200000 0 0799999999999999975
Q ss_pred -----hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -----MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -----~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+... .+.+.|.++||.+
T Consensus 145 ~~~~~l~~~l~~~~~-~~~tiii~sh~~~ 172 (194)
T cd03213 145 SSALQVMSLLRRLAD-TGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCch
Confidence 4444444432 2678899999875
No 200
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.9e-20 Score=153.16 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=50.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
.++++|++++|++. ++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 62 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRD-ASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASG 62 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEe-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 48899999999632 379999 9999999999999999999999999999998876443
No 201
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.79 E-value=3.3e-20 Score=165.12 Aligned_cols=147 Identities=8% Similarity=-0.032 Sum_probs=92.8
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------ccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VHA 96 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~~ 96 (199)
|+++|++++|++. .+|++ +||++++|++++|+||||||||||+++|+|.+.+..+.+. .++... ...
T Consensus 4 l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~-~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQL-PSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ-SQFSHITRLSFEQLQKLV 79 (490)
T ss_pred EEEEeEEEEcCCe--eeccc-ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEE-ECCcccccCCHHHHHHHh
Confidence 7899999999754 69999 9999999999999999999999999999998876544332 221100 000
Q ss_pred ccccCC-CC--C----C--CchH-HH------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640 97 DIIVPR-GG--E----N--CVAI-DL------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---- 156 (199)
Q Consensus 97 ~~~~~~-~~--~----~--~~~~-~~------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---- 156 (199)
...... .. . + .... +. ..+.+.+.+. .+.+....+..+.+|||||+||++||||++.
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQ---QFGITALLDRRFKYLSTGETRKTLLCQALMSEPDL 156 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHH---HcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 000000 00 0 0 0000 00 0111211111 1233333344567999999999999999975
Q ss_pred -----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.... +.++|.++||.+
T Consensus 157 llLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~ 196 (490)
T PRK10938 157 LILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFD 196 (490)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 55555554333 678899999865
No 202
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4.2e-20 Score=150.18 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=50.2
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
-++++|+++.|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~-~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 58 (241)
T PRK10895 3 TLTAKNLAKAYKGR--RVVED-VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG 58 (241)
T ss_pred eEEEeCcEEEeCCE--EEEee-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 37899999999754 79999 9999999999999999999999999999998866543
No 203
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.4e-20 Score=151.27 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=52.0
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeeccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMD 89 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d 89 (199)
.++++|+++.|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.+ +..|.+..+
T Consensus 2 ~~~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~ 65 (246)
T PRK14269 2 IAKTTNLNLFYGKK--QALFD-INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIE 65 (246)
T ss_pred ceeeeeeEEEECCE--eeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEEC
Confidence 36799999999754 79999 9999999999999999999999999999998753 334444433
No 204
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.4e-20 Score=154.63 Aligned_cols=149 Identities=16% Similarity=0.094 Sum_probs=92.1
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc----------c
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV----------H 95 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~----------~ 95 (199)
++++|+++.|++. +++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++.... .
T Consensus 2 l~~~~l~~~~~~~-~~~l~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALEN-INLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGK-VLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred EEEEEEEEEcCCC-Cceeee-eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEECCccccHHHHHhh
Confidence 5789999999642 369999 99999999999999999999999999999988765433 322221110 0
Q ss_pred cccccCC-C--CCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640 96 ADIIVPR-G--GENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 96 ~~~~~~~-~--~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
....... . ..... ......+.+...+. ...+....+..+..|||||+||++||||+..
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALA---EIGLEKYRHRSPKTLSGGQGQCVALAGILTMEP 155 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHH---HCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 0000000 0 00000 00011111111111 1222222344677899999999999999975
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.++.. .+.+.|.++||.+.
T Consensus 156 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~~ 198 (274)
T PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLEE 198 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH
Confidence 4455555433 36788999997653
No 205
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.9e-20 Score=149.32 Aligned_cols=147 Identities=14% Similarity=0.070 Sum_probs=88.3
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADI 98 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~ 98 (199)
++++|++++|++. . .+ +||++.+|++++|+||||||||||+++|+|.+.+..+. +..++... .....
T Consensus 1 i~~~~l~~~~~~~--~--~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~-i~~~g~~~~~~~~~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGR-VLINGVDVTAAPPADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcCcCCHhHccEEE
Confidence 4689999999753 2 38 99999999999999999999999999999998765432 22222110 00000
Q ss_pred cc-CCCCCCCch-HH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640 99 IV-PRGGENCVA-ID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------ 156 (199)
Q Consensus 99 ~~-~~~~~~~~~-~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------ 156 (199)
.. ......... .+ ...+.+.+.+. ...+....+..+.+|||||+||++||||++.
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~lll 151 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALA---RVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLL 151 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHH---HcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 00 000000000 00 00111111111 1122222233566899999999999999975
Q ss_pred ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.....+.+.|.++||.+.
T Consensus 152 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 191 (211)
T cd03298 152 LDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED 191 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 4455555544446788999998764
No 206
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.79 E-value=3.5e-20 Score=152.90 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=49.9
Q ss_pred cccccceeecccc-------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNM-------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~-------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++||++.|++. .+.++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 66 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTN-VSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG 66 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeC-ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 6789999999631 3479999 9999999999999999999999999999998876543
No 207
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=9.4e-20 Score=141.85 Aligned_cols=144 Identities=13% Similarity=0.110 Sum_probs=96.8
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-----------
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV----------- 94 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~----------- 94 (199)
++++||+++|.+. .++++ +|+.+++|.+.+|+||||||||||+.+++.++..+.+ .+..++....
T Consensus 2 I~i~nv~K~y~~~--~vl~~-isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G-~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 2 ITIENVSKSYGTK--VVLDD-VSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSG-EITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred eeehhhhHhhCCE--Eeecc-ceeeecCCceeEEECCCCccHHHHHHHHHHhccccCc-eEEEeeeecccCChHHHHHHH
Confidence 6789999999887 89999 9999999999999999999999999888777765543 3333322100
Q ss_pred -----ccc----------cccCC-----CCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640 95 -----HAD----------IIVPR-----GGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG 154 (199)
Q Consensus 95 -----~~~----------~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~ 154 (199)
.+. ..+.| ++.+..+...+.+++ +.+. ..++... .-.+||||||||.-||..+
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~ai-eyl~---L~~l~dr---yLd~LSGGQrQRAfIAMVl 150 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAI-EYLH---LEDLSDR---YLDELSGGQRQRAFIAMVL 150 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHH-HHhc---ccchHHH---hHHhcccchhhhhhhheee
Confidence 000 01111 112222333333444 3222 1122222 2347999999999999887
Q ss_pred ch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
.. |++.++++-.+..=+.|.|-||=+
T Consensus 151 aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN 197 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197 (252)
T ss_pred eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc
Confidence 54 888888888888888899998644
No 208
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=5.8e-20 Score=150.37 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=48.5
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.-++++|++++|++. ++|++ +||++++|++++|+|+||||||||+++|+|+..
T Consensus 5 ~~l~~~~l~~~~~~~--~il~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 5 PKMEARGLSFFYGDF--QALHD-ISLEFEQNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred cEEEEeeeEEEECCe--eeecc-eeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 348899999999754 79999 999999999999999999999999999999864
No 209
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=5.5e-20 Score=150.55 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=52.9
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC----eeeeeccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP----WVTLLSMD 89 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~----~~~~i~~d 89 (199)
-++++|++++|++. ++|++ +||++.+|++++|+|+||||||||+++|+|.+.+. ..|.+..+
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~ 69 (253)
T PRK14267 4 AIETVNLRVYYGSN--HVIKG-VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLF 69 (253)
T ss_pred eEEEEeEEEEeCCe--eeeec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEEC
Confidence 37899999999764 79999 99999999999999999999999999999998763 34544443
No 210
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=4.9e-20 Score=164.67 Aligned_cols=149 Identities=12% Similarity=0.127 Sum_probs=94.4
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC-Ceeeeecccchhc----------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV-PWVTLLSMDSFYR---------- 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~-~~~~~i~~d~~~~---------- 93 (199)
-++++|++++|++. ++|++ +||++++|++++|+||||||||||+++|+|.+.+ +..|.+..++...
T Consensus 5 ~l~~~nl~~~~~~~--~il~~-isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGGV--KALDN-VSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCCe--Eeecc-eeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 38899999999754 79999 9999999999999999999999999999998876 2444443332110
Q ss_pred cccccc-cCCCCCC------------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640 94 VHADII-VPRGGEN------------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG 154 (199)
Q Consensus 94 ~~~~~~-~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~ 154 (199)
...... ....... ....+...+.+.+.+. .+.++...+....+|||||+|||+||||+
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgGqkqrv~la~al 158 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLA---QLKLDINPATPVGNLGLGQQQLVEIAKAL 158 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHH---HcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 000000 0000000 0011111112212221 12333333446678999999999999999
Q ss_pred ch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+. +.+.+.+.. .-+.++|.++||.+
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tvi~~tH~~~ 204 (506)
T PRK13549 159 NKQARLLILDEPTASLTESETAVLLDIIRDLK-AHGIACIYISHKLN 204 (506)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCcHH
Confidence 75 445555543 23678899999865
No 211
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.9e-20 Score=151.98 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=50.9
Q ss_pred ccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 21 ILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 21 ~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+....++++|+++.|++. ++|++ +||++.+|++++|+|+||||||||+++|+|.+.+
T Consensus 8 ~~~~~l~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~ 64 (258)
T PRK14268 8 VAQPQIKVENLNLWYGEK--QALKN-VSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDL 64 (258)
T ss_pred ccceeEEEeeeEEEeCCe--eeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 334469999999999754 79999 9999999999999999999999999999998864
No 212
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.79 E-value=1.9e-20 Score=141.20 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=82.4
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE 105 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~ 105 (199)
++++|+++.|++. +++++ ++|++++|++++|+|+||||||||+++|+|.+.+..+. +..++..
T Consensus 1 l~~~~l~~~~~~~--~~l~~-~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~~~~------------- 63 (144)
T cd03221 1 IELENLSKTYGGK--LLLKD-ISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTWGSTV------------- 63 (144)
T ss_pred CEEEEEEEEECCc--eEEEe-eEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceE-EEECCeE-------------
Confidence 4688999999764 69999 99999999999999999999999999999987765433 3222210
Q ss_pred CCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------------hHHHHHhhcccc
Q psy9640 106 NCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----------------MEQAVHDVCKDI 168 (199)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----------------~~~~l~~~~p~~ 168 (199)
..++- .+||+||+||++||||+.. ....+.+.+..+
T Consensus 64 ------------------------~i~~~---~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 64 ------------------------KIGYF---EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred ------------------------EEEEE---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 00000 0189999999999999975 334444444444
Q ss_pred ceeEEEEEeCCCC
Q psy9640 169 RIGKILIQTNKAT 181 (199)
Q Consensus 169 ~~~~~~~~~~~~~ 181 (199)
..+.+.++|+.+.
T Consensus 117 ~~til~~th~~~~ 129 (144)
T cd03221 117 PGTVILVSHDRYF 129 (144)
T ss_pred CCEEEEEECCHHH
Confidence 5678899998653
No 213
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2.7e-20 Score=144.99 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=48.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++|+++.|++. +++++ ++|++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 1 i~~~~l~~~~~~~--~~l~~-i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (178)
T cd03229 1 LELKNVSKRYGQK--TVLND-VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSG 55 (178)
T ss_pred CEEEEEEEEECCe--EEEee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4689999999754 79999 9999999999999999999999999999998765543
No 214
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.79 E-value=2.5e-20 Score=152.59 Aligned_cols=56 Identities=23% Similarity=0.236 Sum_probs=50.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
-++++||++.|++. .++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 58 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRD-VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHG 58 (253)
T ss_pred eEEEeeeEEEeCCc--eEeec-ceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 37899999999754 68999 9999999999999999999999999999998876543
No 215
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.79 E-value=4.1e-20 Score=148.64 Aligned_cols=148 Identities=16% Similarity=0.119 Sum_probs=91.5
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-----cccccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-----HADIIV 100 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-----~~~~~~ 100 (199)
++++|++++|++. +++++ ++|++.+|++++|+|+||||||||+++|+|.+.+..+.+ ..++.... ......
T Consensus 1 l~l~~v~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~~~~~~~~~~~~~~~ 76 (223)
T TIGR03740 1 LETKNLSKRFGKQ--TAVNN-ISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI-IFDGHPWTRKDLHKIGSLI 76 (223)
T ss_pred CEEEeEEEEECCE--EEEee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEeccccccccEEEEc
Confidence 4689999999754 79999 999999999999999999999999999999886654433 22221100 001111
Q ss_pred CC-CCCCC-chHHHHHH----------HHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------------
Q psy9640 101 PR-GGENC-VAIDLIVQ----------HIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------------ 156 (199)
Q Consensus 101 ~~-~~~~~-~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------------ 156 (199)
.. ..... ...+.+.. .+...+ ....+....+..+.+|||||+||++||||++.
T Consensus 77 q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l---~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~ 153 (223)
T TIGR03740 77 ESPPLYENLTARENLKVHTTLLGLPDSRIDEVL---NIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTN 153 (223)
T ss_pred CCCCccccCCHHHHHHHHHHHcCCCHHHHHHHH---HHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 11 11100 11111100 010111 11122222344567899999999999999975
Q ss_pred ---------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+... .+.+.|.++||...
T Consensus 154 ~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~~ 186 (223)
T TIGR03740 154 GLDPIGIQELRELIRSFPE-QGITVILSSHILSE 186 (223)
T ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHH
Confidence 4444544432 35678999998763
No 216
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.79 E-value=3.4e-20 Score=152.11 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=50.2
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
.++++|++++|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 1 ~l~~~~l~~~~~~~--~il~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 56 (256)
T TIGR03873 1 GLRLSRVSWSAGGR--LIVDG-VDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAG 56 (256)
T ss_pred CceEEeEEEEECCE--EEEee-eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 36889999999764 79999 9999999999999999999999999999998876543
No 217
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.6e-20 Score=154.79 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=50.5
Q ss_pred Ccccccceeeccccc---cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNMV---KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~---~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
.++++||++.|++.. +++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G 62 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFD-VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 378999999997531 369999 9999999999999999999999999999998876543
No 218
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=4.7e-20 Score=142.71 Aligned_cols=135 Identities=17% Similarity=0.122 Sum_probs=85.2
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc-cccCCC-
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD-IIVPRG- 103 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~-~~~~~~- 103 (199)
++++|++++|++...+++++ ++|++++|++++|+||||||||||+++|+|.+.+..+. +..++....... ....+.
T Consensus 1 l~~~~l~~~~~~~~~~~l~~-i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i 78 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKD-VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGE-ILIDGVDLRDLDLESLRKNI 78 (171)
T ss_pred CEEEEEEEEcCCCCcccccc-eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCE-EEECCEEhhhcCHHHHHhhE
Confidence 46889999997643468999 99999999999999999999999999999988765433 333322110000 000000
Q ss_pred CCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHH
Q psy9640 104 GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVH 162 (199)
Q Consensus 104 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~ 162 (199)
..-......+...+.+. -|||||+||++||||+.. +.+.+.
T Consensus 79 ~~~~~~~~~~~~t~~e~------------------lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~ 140 (171)
T cd03228 79 AYVPQDPFLFSGTIREN------------------ILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR 140 (171)
T ss_pred EEEcCCchhccchHHHH------------------hhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 00000000000000000 099999999999999975 444555
Q ss_pred hhccccceeEEEEEeCCCCC
Q psy9640 163 DVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 163 ~~~p~~~~~~~~~~~~~~~~ 182 (199)
+... +.+.|.++||.+..
T Consensus 141 ~~~~--~~tii~~sh~~~~~ 158 (171)
T cd03228 141 ALAK--GKTVIVIAHRLSTI 158 (171)
T ss_pred HhcC--CCEEEEEecCHHHH
Confidence 5433 46779999987654
No 219
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4.2e-20 Score=168.79 Aligned_cols=151 Identities=13% Similarity=0.101 Sum_probs=96.5
Q ss_pred Ccccccceeecccc---------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--
Q psy9640 25 GRDLEGVIKQYVNM---------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-- 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~~---------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-- 93 (199)
-++++||++.|+.. ...++++ +||++.+|++++|+|+||||||||+++|+|++.+..+. +..++...
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~-vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~-I~~~g~~i~~ 390 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEK-VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGE-IIFNGQRIDT 390 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEee-eEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcE-EEECCEECCc
Confidence 48999999999621 1368999 99999999999999999999999999999998765433 33322100
Q ss_pred ----------cccccccCCC--CCCC-c-hHHHHH---------------HHHHHHHhcCceeecC-CceeeecceecCC
Q psy9640 94 ----------VHADIIVPRG--GENC-V-AIDLIV---------------QHIHSQLQAGVSVDMP-QGYTYEGKRCAVS 143 (199)
Q Consensus 94 ----------~~~~~~~~~~--~~~~-~-~~~~~~---------------~~l~~~~~~~~~~~~~-~~~~~~g~~lSgG 143 (199)
.......... ..++ . ..+.+. +.+.+.+. .+.++ ...+..+.+||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~---~~gL~~~~~~~~~~~LSgG 467 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLE---RVGLLPEHAWRYPHEFSGG 467 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---HcCCCHHHhhCCcccCCHH
Confidence 0011111110 0111 0 111111 11111111 12332 2234567899999
Q ss_pred eeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 144 KICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 144 q~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|+|||+||||++. +.+.+.++....+.++|+|+||.+
T Consensus 468 qrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~ 525 (623)
T PRK10261 468 QRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA 525 (623)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999999999975 566666665555788999999865
No 220
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.5e-20 Score=153.73 Aligned_cols=149 Identities=12% Similarity=0.033 Sum_probs=92.7
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-----------
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV----------- 94 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~----------- 94 (199)
++++||++.|++. ++++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+ .+..++....
T Consensus 2 l~~~~l~~~~~~~-~~~l~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~ 78 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKG-INFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG-EVLIKGEPIKYDKKSLLEVRK 78 (275)
T ss_pred EEEEEEEEEeCCC-Ceeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEECccccchHHHHHh
Confidence 5789999999642 369999 9999999999999999999999999999998765543 3333322110
Q ss_pred ccccccCC---CCCCCchHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640 95 HADIIVPR---GGENCVAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 95 ~~~~~~~~---~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~- 156 (199)
........ ........+.+ .+.+...+. .+.+....+..+.+|||||+||++||||++.
T Consensus 79 ~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~ 155 (275)
T PRK13639 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALK---AVGMEGFENKPPHHLSGGQKKRVAIAGILAMK 155 (275)
T ss_pred heEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HCCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 00010111 00000000111 011111111 1223233344677999999999999999975
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.... +.+.|.++||.+.
T Consensus 156 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~~ 199 (275)
T PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDL 199 (275)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHH
Confidence 44555554433 6788999998663
No 221
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=6.5e-20 Score=149.84 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=48.6
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
..++++||++.|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14240 2 GKISVKDLDLFYGDF--QALKK-INLDIEENQVTALIGPSGCGKSTFLRTLNRMND 54 (250)
T ss_pred CeEEEEEEEEEECCc--eeeec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 358899999999754 79999 999999999999999999999999999999865
No 222
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3e-20 Score=152.80 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=49.5
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
...++++|+++.|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus 11 ~~~l~~~~l~~~~~~~--~il~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF--HALKN-INLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred CceEEEEEEEEEeCCe--EEeec-eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 3458999999999754 79999 999999999999999999999999999999875
No 223
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=7.7e-20 Score=149.51 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=48.7
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
++++|+++.|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+.
T Consensus 5 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~ 57 (252)
T PRK14272 5 LSAQDVNIYYGDK--QAVKN-VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLT 57 (252)
T ss_pred EEEeeeEEEECCE--Eeecc-ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 7889999999754 79999 99999999999999999999999999999988653
No 224
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.79 E-value=3.9e-20 Score=165.81 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=46.5
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
++++|++++|++. .+|++ +||++.+|++++|+||||||||||+++|+|.+
T Consensus 1 l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 1 IEVKNLTKKFDGK--EVLKN-ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred CEEEEEEEEECCe--Eeeec-eeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 5789999999654 79999 99999999999999999999999999999987
No 225
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.79 E-value=7.9e-20 Score=152.93 Aligned_cols=145 Identities=11% Similarity=0.041 Sum_probs=92.1
Q ss_pred Ccccccceeeccc-cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cc
Q psy9640 25 GRDLEGVIKQYVN-MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VH 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~-~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~ 95 (199)
.++++|+++.|++ . .+|++ |||++++|+++|++||||||||||+++|+|+..|..+. +..++... ..
T Consensus 4 ~i~~~~l~k~~~~~~--~~l~~-vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~-i~i~G~~~~~~~~~~~~~ 79 (293)
T COG1131 4 VIEVRNLTKKYGGDK--TALDG-VSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE-ILVLGYDVVKEPAKVRRR 79 (293)
T ss_pred eeeecceEEEeCCCC--EEEec-eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEEcCEeCccCHHHHHhh
Confidence 4678999999984 5 89999 99999999999999999999999999999999875433 32222110 00
Q ss_pred cc-cccCCCCCCCch-------------------HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640 96 AD-IIVPRGGENCVA-------------------IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE 155 (199)
Q Consensus 96 ~~-~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~ 155 (199)
.. ++.....+...+ .+.+.+.+ + .+.++...+.....||+|||||++||+|++
T Consensus 80 igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l-~------~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 80 IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL-E------LFGLEDKANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred eEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHH-H------HcCCchhhCcchhhcCHHHHHHHHHHHHHh
Confidence 11 111111111000 11111112 1 123332113345689999999999999997
Q ss_pred h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
. +.+.+.+....-+.+++..+|..+
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~ 198 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE 198 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH
Confidence 6 555555555553366777777544
No 226
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.79 E-value=3.4e-20 Score=182.90 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=97.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe--------eeeecccchhcccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW--------VTLLSMDSFYRVHA 96 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~--------~~~i~~d~~~~~~~ 96 (199)
.++++|++|.|++..+++|+| +||++++|++++|+||||||||||+++|+|.+.+.. +++++++.....
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~-isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~-- 712 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNG-ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQN-- 712 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccC--
Confidence 699999999997644579999 999999999999999999999999999999887653 333444332111
Q ss_pred ccccCCC-CCCCchHHHHHHHHHHHHh-cCceeecCCceee----ecceecCCeeeeeeEEeccch--------------
Q psy9640 97 DIIVPRG-GENCVAIDLIVQHIHSQLQ-AGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-------------- 156 (199)
Q Consensus 97 ~~~~~~~-~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-------------- 156 (199)
....++- ...+.+.+...+.+ +... ......+|.++++ .|.+||||||||++||||+..
T Consensus 713 ~Ti~eNI~~g~~~~~~~~~~~~-~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saL 791 (1522)
T TIGR00957 713 DSLRENILFGKALNEKYYQQVL-EACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791 (1522)
T ss_pred CcHHHHhhcCCccCHHHHHHHH-HHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 0000000 00111222222222 2211 1223345666554 678999999999999999975
Q ss_pred -------hHHHHHh---hccccceeEEEEEeCCCC
Q psy9640 157 -------MEQAVHD---VCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -------~~~~l~~---~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+ ... +.+.|.++|+.+.
T Consensus 792 D~~~~~~i~~~l~~~~~~~~--~~tvIlvTH~~~~ 824 (1522)
T TIGR00957 792 DAHVGKHIFEHVIGPEGVLK--NKTRILVTHGISY 824 (1522)
T ss_pred CHHHHHHHHHHHhhhhhhhc--CCEEEEEeCChhh
Confidence 3333322 222 3677999997664
No 227
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.79 E-value=5.8e-20 Score=149.41 Aligned_cols=55 Identities=20% Similarity=0.130 Sum_probs=49.8
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++|+++.|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 3 i~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G 57 (242)
T TIGR03411 3 LYLEGLSVSFDGF--KALND-LSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEG 57 (242)
T ss_pred EEEEeeEEEcCCe--EEeee-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 6899999999764 79999 9999999999999999999999999999998866543
No 228
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=3.1e-20 Score=153.62 Aligned_cols=147 Identities=13% Similarity=0.070 Sum_probs=91.0
Q ss_pred ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc------------
Q psy9640 27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV------------ 94 (199)
Q Consensus 27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~------------ 94 (199)
.++|+++.|... +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....
T Consensus 26 ~~~~~~~~~~~~--~il~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~-i~i~g~~~~~~~~~~~~~~~~ 101 (269)
T cd03294 26 SKEEILKKTGQT--VGVND-VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK-VLIDGQDIAAMSRKELRELRR 101 (269)
T ss_pred hhhhhhhhcCCc--eEeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEccccChhhhhhhhc
Confidence 567888888655 78999 99999999999999999999999999999988765433 333322110
Q ss_pred -ccccccC-CCCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640 95 -HADIIVP-RGGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 95 -~~~~~~~-~~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~- 156 (199)
....... ........ .+.+ .+.+.+.+. .+.+....+..+.+|||||+||++||||++.
T Consensus 102 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALE---LVGLEGWEHKYPDELSGGMQQRVGLARALAVD 178 (269)
T ss_pred CcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCHhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 0011111 11111101 1111 011111111 1233333344667899999999999999976
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+....-+.+.|.++||.+
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~ 222 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD 222 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 444454444333578899999865
No 229
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.79 E-value=9.3e-20 Score=146.89 Aligned_cols=54 Identities=22% Similarity=0.144 Sum_probs=49.6
Q ss_pred Ccccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 25 GRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 25 ~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
-+.++||+++|++. .++++++ +||++++|++++|+||||||||||+++|+|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~-vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILND-VSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cceeecceeeeecCccccccccC-ceEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 46799999999765 3689999 999999999999999999999999999999987
No 230
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4.8e-20 Score=164.85 Aligned_cols=148 Identities=11% Similarity=0.076 Sum_probs=93.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------c
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------V 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~ 94 (199)
-++++|++++|++. +++++ +||++++|++++|+||||||||||+++|+|.+.+..+.+ ..++... .
T Consensus 5 ~l~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 5 YISMAGIGKSFGPV--HALKS-VNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI-TINNINYNKLDHKLAAQL 80 (510)
T ss_pred eEEEeeeEEEcCCe--EEeee-eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE-EECCEECCCCCHHHHHHC
Confidence 37899999999754 79999 999999999999999999999999999999987654333 2221100 0
Q ss_pred cccccc-CCCCCCCc----------------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEE
Q psy9640 95 HADIIV-PRGGENCV----------------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSIL 151 (199)
Q Consensus 95 ~~~~~~-~~~~~~~~----------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrvaia 151 (199)
...... ........ ......+.+.+.+. .+.+....+....+|||||+|||+||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLL---RVGLKVDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHH---HcCCCCCcccchhhCCHHHHHHHHHH
Confidence 000000 00000000 00111111211121 12333333556779999999999999
Q ss_pred eccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
||++. +.+.+.++... +.++|.++||.+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~ 206 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLA 206 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 99975 55555554333 678899999865
No 231
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.79 E-value=5.5e-20 Score=154.44 Aligned_cols=146 Identities=12% Similarity=0.039 Sum_probs=92.1
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHAD 97 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~~ 97 (199)
++++|++++|++. .+|++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++... ....
T Consensus 3 l~~~~l~~~~~~~--~~l~~-is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~-i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGTQ--NALDE-VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS-VQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECCE--EEEEE-eEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEcccChHHHHhceE
Confidence 6899999999754 79999 99999999999999999999999999999988766543 33332111 0011
Q ss_pred ccc-CCCCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 98 IIV-PRGGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 98 ~~~-~~~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
... ......... .+.+ .+.+...+. ...+....+.....|||||+||++||||++.
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 155 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIE---LVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVL 155 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 111 111111101 1111 111111111 1123332344567899999999999999976
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+... +.+.|.++|+.+
T Consensus 156 iLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l~ 193 (301)
T TIGR03522 156 ILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIMQ 193 (301)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH
Confidence 4455555432 467799998665
No 232
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=4.8e-20 Score=153.07 Aligned_cols=151 Identities=14% Similarity=0.137 Sum_probs=93.9
Q ss_pred cccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640 26 RDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H 95 (199)
Q Consensus 26 i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~ 95 (199)
++++|+++.|++. ..++|++ +||++.+|++++|+|+||||||||+++|+|.+.+..+.+ ..++.... .
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~-v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 5 LEVENLVFKYEKESDVNQLNG-VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV-KIDGELLTAENVWNLRRK 82 (277)
T ss_pred EEEEEEEEEcCCCCcCeeeee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEE-EECCEECCcCCHHHHhcc
Confidence 7899999999743 2368999 999999999999999999999999999999987654432 22221100 0
Q ss_pred cccccCC-C--CCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640 96 ADIIVPR-G--GENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 96 ~~~~~~~-~--~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
....... . ..... ..+...+.+...+. .+.+....+..+.+|||||+||++||||+..
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p 159 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALL---AVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHH---HCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 0110000 0 00000 00111111111111 1122222344567899999999999999975
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.++...-+.+.|.++||...
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~ 203 (277)
T PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE 203 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 5555555554446788999997664
No 233
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.79 E-value=5.9e-20 Score=148.06 Aligned_cols=148 Identities=12% Similarity=0.069 Sum_probs=92.3
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc--cccccCCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH--ADIIVPRG 103 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~--~~~~~~~~ 103 (199)
+.++|+++.|... +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+ .+..++..... ........
T Consensus 23 l~~~~~~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~ 98 (224)
T cd03220 23 LGILGRKGEVGEF--WALKD-VSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG-TVTVRGRVSSLLGLGGGFNPE 98 (224)
T ss_pred hhhhhhhhhcCCe--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEchhhcccccCCCC
Confidence 7788888888765 79999 9999999999999999999999999999998776544 33333321100 00000000
Q ss_pred --C-CC--------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------------
Q psy9640 104 --G-EN--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------- 156 (199)
Q Consensus 104 --~-~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------- 156 (199)
. .+ ........+.+.+.+. ...++...+....+|||||+||++||||++.
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~ 175 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIE---FSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 0 00 0000111111111111 1223333344567899999999999999975
Q ss_pred -----hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -----MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -----~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.... +.+.|.++||.+.
T Consensus 176 ~~~~~~~~~l~~~~~~-~~tiii~sH~~~~ 204 (224)
T cd03220 176 AFQEKCQRRLRELLKQ-GKTVILVSHDPSS 204 (224)
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 44455554433 5678999998664
No 234
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.78 E-value=5.6e-20 Score=145.73 Aligned_cols=139 Identities=10% Similarity=-0.031 Sum_probs=86.3
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc-CCCeeeeecccchhcccccc-cc-CC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL-NVPWVTLLSMDSFYRVHADI-IV-PR 102 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l-~~~~~~~i~~d~~~~~~~~~-~~-~~ 102 (199)
++++|++++|++. +++++ +||++.+|++++|+|+||||||||+++|+|.. .++..|.+..++........ .. ..
T Consensus 1 l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGGK--EILKG-VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCCE--Eeeec-cceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 4689999999754 79999 99999999999999999999999999999985 23444444444321110000 00 00
Q ss_pred -CCCCCchHHHHH-HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHH
Q psy9640 103 -GGENCVAIDLIV-QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQ 159 (199)
Q Consensus 103 -~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~ 159 (199)
..+-+....... ..+...+ ...+.+|||||+||++||||+.. +.+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 145 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAE 145 (200)
T ss_pred cEEEeecChhhccCccHHHHH------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 000000000000 0000000 11224799999999999999975 445
Q ss_pred HHHhhccccceeEEEEEeCCC
Q psy9640 160 AVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 160 ~l~~~~p~~~~~~~~~~~~~~ 180 (199)
.+.+.... +.+.|.++|+.+
T Consensus 146 ~L~~~~~~-~~tiii~sh~~~ 165 (200)
T cd03217 146 VINKLREE-GKSVLIITHYQR 165 (200)
T ss_pred HHHHHHHC-CCEEEEEecCHH
Confidence 55554332 567799999765
No 235
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=5.1e-20 Score=157.75 Aligned_cols=145 Identities=12% Similarity=0.049 Sum_probs=90.1
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------------
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------------ 93 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------------ 93 (199)
|++ |++++|++. . + + +||++++|++++|+||||||||||+++|+|++.+..+.+ ..++...
T Consensus 2 l~~-~l~k~~~~~--~-~-~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I-~~~g~~~~~~~~~~~~~~~ 74 (352)
T PRK11144 2 LEL-NFKQQLGDL--C-L-T-VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRI-VLNGRVLFDAEKGICLPPE 74 (352)
T ss_pred eEE-EEEEEeCCE--E-E-E-EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccccccccchh
Confidence 455 899999653 2 2 8 999999999999999999999999999999887654433 3322110
Q ss_pred -cccccccCC-CCC-CCchHHHHH--------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640 94 -VHADIIVPR-GGE-NCVAIDLIV--------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------ 156 (199)
Q Consensus 94 -~~~~~~~~~-~~~-~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------ 156 (199)
......... ... +....+.+. +.+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 75 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llL 151 (352)
T PRK11144 75 KRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVA---LLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLL 151 (352)
T ss_pred hCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHH---HcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 000111111 001 100011110 11111111 1233333345677999999999999999975
Q ss_pred ---------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ---------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.....+.++|.++||.+
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~ 190 (352)
T PRK11144 152 MDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD 190 (352)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 555666665555678899999875
No 236
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.78 E-value=5.4e-20 Score=164.56 Aligned_cols=148 Identities=15% Similarity=0.085 Sum_probs=93.9
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------c
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------V 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~ 94 (199)
-++++|++++|++. .+|++ +||++++|++++|+||||||||||+++|+|.+.+..+.+ ..++... .
T Consensus 11 ~l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 11 LLCARSISKQYSGV--EVLKG-IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL-EIGGNPCARLTPAKAHQL 86 (510)
T ss_pred eEEEEeEEEEeCCc--eeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHHHHHhC
Confidence 48999999999754 79999 999999999999999999999999999999887654433 3222110 0
Q ss_pred cccc-ccCCCCCCC-chHH----------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640 95 HADI-IVPRGGENC-VAID----------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------ 156 (199)
Q Consensus 95 ~~~~-~~~~~~~~~-~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------ 156 (199)
.... ......... ...+ ...+.+.+.+. .+.+....+....+|||||+|||+||||++.
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lll 163 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLA---ALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILI 163 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHH---HcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 0001 111111000 0000 11111211111 1233333345677899999999999999975
Q ss_pred ---------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ---------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.... +.+.|.++||.+
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~ 201 (510)
T PRK15439 164 LDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLP 201 (510)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 44455544333 678899999865
No 237
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3e-20 Score=169.73 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=50.9
Q ss_pred Ccccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
-++++|+++.|... ..+++++ +||++++|++++|+|+||||||||+++|+|++.+..+
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~-is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G 71 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRN-LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGG 71 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEe-eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCe
Confidence 48999999999632 2479999 9999999999999999999999999999999876543
No 238
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=6.8e-20 Score=149.97 Aligned_cols=53 Identities=25% Similarity=0.235 Sum_probs=48.8
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
+.++++|++++|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus 3 ~~l~~~nl~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 3 NKVKLEQLNVHFGKN--HAVKD-VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred cEEEEEEEEEEeCCe--eEEec-ceEEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 358899999999754 79999 999999999999999999999999999999875
No 239
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=4.6e-20 Score=149.63 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=50.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
-++++|++++|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 60 (237)
T PRK11614 5 MLSFDKVSAHYGKI--QALHE-VSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSG 60 (237)
T ss_pred EEEEEeEEEeeCCc--eeeee-eEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 37899999999754 79999 9999999999999999999999999999998876543
No 240
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.78 E-value=6.8e-20 Score=146.85 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=48.3
Q ss_pred ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
.+.|+.+.|+.. .+++++ +||++.+|++++|+|+||||||||+++|+|.+.+..
T Consensus 2 ~~~~~~~~~~~~-~~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 55 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSN-INIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLE 55 (218)
T ss_pred eeeeeEEecCCC-Ccceee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 577899999754 479999 999999999999999999999999999999986654
No 241
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.1e-19 Score=150.39 Aligned_cols=52 Identities=23% Similarity=0.185 Sum_probs=48.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
-++++|+++.|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus 24 ~l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 24 VFDTQNLNLWYGED--HALKN-INLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred EEEEeeeEEEECCc--ceeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 48999999999754 79999 999999999999999999999999999999886
No 242
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=6.9e-20 Score=149.86 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=49.5
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.++++|++++|++. +++++ +||++.+|++++|+|+||||||||+++|+|.+.+.
T Consensus 4 ~l~~~~l~~~~~~~--~il~~-~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~ 57 (251)
T PRK14249 4 KIKIRGVNFFYHKH--QVLKN-INMDFPERQITAIIGPSGCGKSTLLRALNRMNDIV 57 (251)
T ss_pred eEEEEEEEEEECCe--eEecc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCcc
Confidence 47899999999754 79999 99999999999999999999999999999988764
No 243
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.78 E-value=1.1e-19 Score=146.21 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=50.1
Q ss_pred cccccceeecccc-----ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640 26 RDLEGVIKQYVNM-----VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84 (199)
Q Consensus 26 i~l~nvs~~y~~~-----~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~ 84 (199)
++++|+++.|+.. ..+++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~ 64 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKN-VSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGR 64 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEec-ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence 6789999999631 2369999 99999999999999999999999999999998765443
No 244
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=9.8e-20 Score=148.79 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=48.7
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
-++++|+++.|++. +++++ +||++++|++++|+|+||||||||+++|+|++.+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~-i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~ 55 (250)
T PRK14262 3 IIEIENFSAYYGEK--KAVKN-VTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDH 55 (250)
T ss_pred eEEEEeeEEEeCCc--eeEee-eeEeecCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 37899999999754 79999 9999999999999999999999999999998864
No 245
>KOG0054|consensus
Probab=99.78 E-value=6.6e-20 Score=175.75 Aligned_cols=154 Identities=15% Similarity=0.151 Sum_probs=117.0
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc-----
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD----- 97 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~----- 97 (199)
.++|+++|++.+|.....++|++ +|++|++||.|||+|.+|||||||+..|..+..+.. |-|..|+......+
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~-is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~-G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKG-ISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE-GEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcC-ceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC-CeEEEcCeecccccHHHHH
Confidence 35799999999997777799999 999999999999999999999999999998887643 33333332211111
Q ss_pred -----cccC--------CC---CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640 98 -----IIVP--------RG---GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 98 -----~~~~--------~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~- 156 (199)
.+++ |. ..++.+.++++++++..........+|.+++. .|.++|-||||.++||||++.
T Consensus 1214 srlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~ 1293 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRK 1293 (1381)
T ss_pred hcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhcc
Confidence 1111 11 12245668899999666555555577877776 688999999999999999986
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+++.+++.+.+.+| +-|.|.=.
T Consensus 1294 skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTV--ltIAHRl~ 1335 (1381)
T KOG0054|consen 1294 SKILVLDEATASVDPETDALIQKTIREEFKDCTV--LTIAHRLN 1335 (1381)
T ss_pred CCEEEEecccccCChHHHHHHHHHHHHHhcCCeE--EEEeeccc
Confidence 88899999999888 77777433
No 246
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.2e-19 Score=149.76 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=48.4
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
-++++||++.|++. +++++ +||++++|++++|+|+||||||||+++|+|++.
T Consensus 10 ~l~i~~v~~~~~~~--~il~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKN-VWLDIPKNQITAFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred EEEEeeeEEEECCE--EEeec-ceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 48999999999754 79999 999999999999999999999999999999876
No 247
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=8.2e-20 Score=152.29 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=49.5
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.-++++|++++|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.+
T Consensus 38 ~~l~i~~l~~~~~~~--~il~~-is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 91 (285)
T PRK14254 38 TVIEARDLNVFYGDE--QALDD-VSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDL 91 (285)
T ss_pred ceEEEEEEEEEECCE--eeEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence 348999999999754 79999 9999999999999999999999999999999863
No 248
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.78 E-value=1.2e-19 Score=147.87 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=51.2
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC-CCeeeeeccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN-VPWVTLLSMD 89 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~-~~~~~~i~~d 89 (199)
++++|+++.|++. +++++ +|+++++|++++|+|+||||||||+++|+|... ++..|.+..+
T Consensus 2 i~~~nl~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~ 63 (248)
T PRK09580 2 LSIKDLHVSVEDK--AILRG-LNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 63 (248)
T ss_pred eEEEEEEEEeCCe--eeeec-ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEEC
Confidence 6789999999754 79999 999999999999999999999999999999852 3344444443
No 249
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.78 E-value=1e-19 Score=162.42 Aligned_cols=149 Identities=12% Similarity=0.069 Sum_probs=93.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----------cc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----------RV 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----------~~ 94 (199)
-++++|++++|++. ++|++ +||++.+|++++|+||||||||||+++|+|.+.+..+.+ ..++.. ..
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~~~~~ 79 (501)
T PRK10762 4 LLQLKGIDKAFPGV--KALSG-AALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI-LYLGKEVTFNGPKSSQEA 79 (501)
T ss_pred eEEEeeeEEEeCCe--EEeee-eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHHHHHhC
Confidence 37899999999754 79999 999999999999999999999999999999987654333 222210 00
Q ss_pred ccccccCC-CCCC-------------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640 95 HADIIVPR-GGEN-------------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG 154 (199)
Q Consensus 95 ~~~~~~~~-~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~ 154 (199)
........ .... ........+.+.+.+. .+.+....+....+|||||+||++||||+
T Consensus 80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~la~al 156 (501)
T PRK10762 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLA---RLNLRFSSDKLVGELSIGEQQMVEIAKVL 156 (501)
T ss_pred CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHH---HcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 00000000 0000 0001111111211121 12333333445678999999999999999
Q ss_pred ch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+. +.+.+.+.... +.++|.++||.+.
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvii~sHd~~~ 203 (501)
T PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKE 203 (501)
T ss_pred hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence 75 44445554333 6788999998653
No 250
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2e-19 Score=148.61 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=48.5
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.-++++|+++.|++. ++|++ +||++++|++++|+|+||||||||+++|+|+..
T Consensus 20 ~~l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (268)
T PRK14248 20 HILEVKDLSIYYGEK--RAVND-ISMDIEKHAVTALIGPSGCGKSTFLRSINRMND 72 (268)
T ss_pred ceEEEEEEEEEeCCc--eeeec-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 358999999999754 79999 999999999999999999999999999999753
No 251
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.1e-19 Score=148.55 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=48.2
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
-++++|++++|+.. ++|++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~-~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 4 IISAKDVHLSYGNY--EALHG-ISLDFEEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred eEEEEeeEEEECCe--eeeee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 37899999999754 79999 999999999999999999999999999999885
No 252
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.78 E-value=8.4e-20 Score=146.58 Aligned_cols=150 Identities=15% Similarity=0.091 Sum_probs=92.9
Q ss_pred cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640 26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------- 94 (199)
Q Consensus 26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------- 94 (199)
++++|+++.|++. .+.++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+. +..++....
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~-vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFD-INLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS-LKVLGQELYGASEKELVQ 79 (220)
T ss_pred EEEEEEEEEccCCCcceeEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEhHhcCHhHHHH
Confidence 5789999999642 1479999 99999999999999999999999999999987665433 333322110
Q ss_pred ---ccccccCC-CCCCC----------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640 95 ---HADIIVPR-GGENC----------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG 154 (199)
Q Consensus 95 ---~~~~~~~~-~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~ 154 (199)
........ ..... ...+.....+.+.+. .+.+....+..+.+||+||+||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~lS~G~~qrv~laral 156 (220)
T TIGR02982 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLE---AVGLGDHLDYYPHNLSGGQKQRVAIARAL 156 (220)
T ss_pred HHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHH---HcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 00000111 00000 001111111111111 12232233446678999999999999999
Q ss_pred ch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+. +...+.+....-..+.|.++||..
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 75 445555544333578899999875
No 253
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.78 E-value=1.4e-19 Score=153.75 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=102.5
Q ss_pred ccCcccccceeecc--ccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe----eeeecccchhc-cc
Q psy9640 23 ARGRDLEGVIKQYV--NMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW----VTLLSMDSFYR-VH 95 (199)
Q Consensus 23 ~~~i~l~nvs~~y~--~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~----~~~i~~d~~~~-~~ 95 (199)
+.-++++|+++.|. +....++++ |||++.+||.+||+|+||||||-.++.+++++..+. .|.+..++... ..
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~-isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKG-ISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CcceeeeccEEEEecCCcceEeecc-ceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 34588999999985 334689999 999999999999999999999999999999996531 12222222111 00
Q ss_pred c------------ccccCC--CCCCCc-hH-HHHHHHH---------------HHHHhcCceeecCC---ceeeecceec
Q psy9640 96 A------------DIIVPR--GGENCV-AI-DLIVQHI---------------HSQLQAGVSVDMPQ---GYTYEGKRCA 141 (199)
Q Consensus 96 ~------------~~~~~~--~~~~~~-~~-~~~~~~l---------------~~~~~~~~~~~~~~---~~~~~g~~lS 141 (199)
. .+.+.. ...|+. .. .++.+.+ .+.+. .+.+|. .++..|++||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~---~VgI~~p~~rl~~yPHeLS 159 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLE---LVGIPEPEKRLDAYPHELS 159 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---HcCCCchhhhhhhCCcccC
Confidence 0 011110 011211 00 1121111 12222 233433 3555799999
Q ss_pred CCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 142 VSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 142 gGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|||||||.||.|+.. +.++++++..+.+.+.++||||=.
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~ 219 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG 219 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH
Confidence 999999999999964 788899999999999999999744
No 254
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.5e-19 Score=148.56 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=49.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.++++|+++.|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+
T Consensus 7 ~l~~~~l~~~~~~~--~il~~-isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~ 59 (259)
T PRK14260 7 AIKVKDLSFYYNTS--KAIEG-ISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL 59 (259)
T ss_pred eEEEEEEEEEECCe--Eeecc-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 58899999999754 79999 9999999999999999999999999999998864
No 255
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.2e-19 Score=146.63 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=48.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
-++++|+++.|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (249)
T PRK14253 3 KFNIENLDLFYGEN--QALKS-INLPIPARQVTALIGPSGCGKSTLLRCLNRMNDL 55 (249)
T ss_pred eEEEeccEEEECCe--eeeec-ceEEecCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 47899999999754 79999 9999999999999999999999999999998875
No 256
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.77 E-value=1.1e-19 Score=152.77 Aligned_cols=139 Identities=12% Similarity=0.067 Sum_probs=84.4
Q ss_pred eccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cccccc-cCCCC
Q psy9640 34 QYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHADII-VPRGG 104 (199)
Q Consensus 34 ~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~~~~-~~~~~ 104 (199)
+|++. ++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..++... ...... .....
T Consensus 2 ~y~~~--~~l~~-vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 77 (302)
T TIGR01188 2 VYGDF--KAVDG-VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGT-ARVAGYDVVREPRKVRRSIGIVPQYASV 77 (302)
T ss_pred eeCCe--eEEee-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEcccCHHHHHhhcEEecCCCCC
Confidence 45443 79999 99999999999999999999999999999998776543 33332110 001111 11111
Q ss_pred CCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-------------
Q psy9640 105 ENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------------- 156 (199)
Q Consensus 105 ~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------------- 156 (199)
..... .+.+ .+.+.+.+. .+.+....+....+|||||+||++||||++.
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLE---LFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 11101 1111 011111111 1233333344677899999999999999975
Q ss_pred --------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 --------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 --------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.... +.++|.++|+..
T Consensus 155 LD~~~~~~l~~~l~~~~~~-g~tvi~~sH~~~ 185 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEE-GVTILLTTHYME 185 (302)
T ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEECCCHH
Confidence 44555554333 678899999764
No 257
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.8e-19 Score=148.84 Aligned_cols=53 Identities=17% Similarity=0.148 Sum_probs=49.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
-++++|++++|+.. ++|++ +||++.+|++++|+|+||||||||+++|+|.+.+
T Consensus 20 ~l~~~nl~~~~~~~--~il~~-vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 72 (267)
T PRK14237 20 ALSTKDLHVYYGKK--EAIKG-IDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDT 72 (267)
T ss_pred EEEEeeEEEEECCe--eeEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc
Confidence 58999999999653 79999 9999999999999999999999999999998864
No 258
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.77 E-value=8.8e-20 Score=151.20 Aligned_cols=53 Identities=11% Similarity=0.112 Sum_probs=48.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
++++|++++|.+. ++|++ +||++++|++++|+|+||||||||+++|+|.+.+.
T Consensus 2 l~~~nl~~~~~~~--~il~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 2 LTADHLHVARRHR--AILRD-LSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred eEEEEEEEEECCE--eEEec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence 6789999999754 79999 99999999999999999999999999999998765
No 259
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.77 E-value=1.6e-19 Score=161.18 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=92.0
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC-Ceeeeecccchhc----------c
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV-PWVTLLSMDSFYR----------V 94 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~-~~~~~i~~d~~~~----------~ 94 (199)
++++|++++|++. +++++ +||++++|++++|+||||||||||+++|+|.+.+ +..|.+..++... .
T Consensus 2 l~i~~l~~~~~~~--~il~~-isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGGV--KALDG-IDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCCe--Eeecc-eEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 6789999999754 79999 9999999999999999999999999999998865 2344444333110 0
Q ss_pred ccccc-cCCCCCCC-------------------chHHHHHHHHHHHHhcCceeecCCce-eeecceecCCeeeeeeEEec
Q psy9640 95 HADII-VPRGGENC-------------------VAIDLIVQHIHSQLQAGVSVDMPQGY-TYEGKRCAVSKICGVSILRA 153 (199)
Q Consensus 95 ~~~~~-~~~~~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~g~~lSgGq~QrvaiaRA 153 (199)
..... ........ ...+...+.+.+.+. ...+.... +....+|||||+|||+||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LSgG~~qrv~iA~a 155 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLR---ELQLDADNVTRPVGDYGGGQQQLVEIAKA 155 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHH---HcCCCCCcccCchhhCCHHHHHHHHHHHH
Confidence 00010 00000000 001111111211111 11222222 23466899999999999999
Q ss_pred cch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.. +.+.+.++. .-+.++|.++||.+
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviiitHd~~ 202 (500)
T TIGR02633 156 LNKQARLLILDEPSSSLTEKETEILLDIIRDLK-AHGVACVYISHKLN 202 (500)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCcHH
Confidence 975 445555543 33678899999865
No 260
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=7.6e-20 Score=149.61 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=47.4
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
++++||+++|+.. +++++ +||++.+|++++|+|+||||||||+++|+|...
T Consensus 6 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (252)
T PRK14255 6 ITSSDVHLFYGKF--EALKG-IDLDFNQNEITALIGPSGCGKSTYLRTLNRMND 56 (252)
T ss_pred EEEEeEEEEECCe--eEEec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 7899999999753 79999 999999999999999999999999999999764
No 261
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.77 E-value=1.2e-19 Score=162.59 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=95.9
Q ss_pred Ccccccceeeccc---cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecc-cch----h----
Q psy9640 25 GRDLEGVIKQYVN---MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSM-DSF----Y---- 92 (199)
Q Consensus 25 ~i~l~nvs~~y~~---~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~-d~~----~---- 92 (199)
-++++|+++.|++ ..+++|++ +||++++|++++|+||||||||||+++|+|.+.+..+.+... +.. .
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~-is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDN-VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEee-EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 4999999999953 22469999 999999999999999999999999999999987655433221 110 0
Q ss_pred ------ccccccc-cCCCCCCC-chHHHHH-------------HHHHHHHhcCceeecCC-----ceeeecceecCCeee
Q psy9640 93 ------RVHADII-VPRGGENC-VAIDLIV-------------QHIHSQLQAGVSVDMPQ-----GYTYEGKRCAVSKIC 146 (199)
Q Consensus 93 ------~~~~~~~-~~~~~~~~-~~~~~~~-------------~~l~~~~~~~~~~~~~~-----~~~~~g~~lSgGq~Q 146 (199)
+...... ........ ...+.+. ..+.+.+. ...++. ..+..+.+|||||+|
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~~~~~LSgGq~q 434 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLK---MVGFDEEKAEEILDKYPDELSEGERH 434 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHH---hCCCCCccchhhhhCChhhCCHHHHH
Confidence 0001111 11111111 1111111 11111111 122321 234567799999999
Q ss_pred eeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 147 GVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 147 rvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
||+||||++. +.+.+.++....+.++|+++||.+.
T Consensus 435 rv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~ 490 (520)
T TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDF 490 (520)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence 9999999975 5555555545456788999998763
No 262
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.9e-19 Score=149.41 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=49.9
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
..++++||+++|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+
T Consensus 20 ~~l~i~nl~~~~~~~--~il~~-vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p 73 (276)
T PRK14271 20 PAMAAVNLTLGFAGK--TVLDQ-VSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK 73 (276)
T ss_pred cEEEEeeEEEEECCE--EEeee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 358999999999754 79999 9999999999999999999999999999998875
No 263
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.1e-19 Score=163.25 Aligned_cols=145 Identities=12% Similarity=0.046 Sum_probs=91.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCC-
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG- 103 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~- 103 (199)
-++++|++++|++. .+|++ +||++++|++++|+||||||||||+++|+|.+.+..+.+ ..++.. ....+.....
T Consensus 319 ~l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~-~i~~~~q~~~~ 393 (530)
T PRK15064 319 ALEVENLTKGFDNG--PLFKN-LNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV-KWSENA-NIGYYAQDHAY 393 (530)
T ss_pred eEEEEeeEEeeCCc--eeecC-cEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCce-EEEEEcccccc
Confidence 48999999999754 69999 999999999999999999999999999999886654332 222110 0000000000
Q ss_pred -CCC--------------CchHHHHHHHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEEeccch-----------
Q psy9640 104 -GEN--------------CVAIDLIVQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSILRAGET----------- 156 (199)
Q Consensus 104 -~~~--------------~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~QrvaiaRA~~~----------- 156 (199)
... ....+.+.+.+ .. ..++ ...+..+.+|||||+||++||||++.
T Consensus 394 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~l-~~------~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt 466 (530)
T PRK15064 394 DFENDLTLFDWMSQWRQEGDDEQAVRGTL-GR------LLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPT 466 (530)
T ss_pred cCCCCCcHHHHHHHhccCCccHHHHHHHH-HH------cCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 000 00011111111 11 1221 12344577999999999999999975
Q ss_pred ------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
..+.+.+.+.....++|.++||.+.
T Consensus 467 ~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~ 497 (530)
T PRK15064 467 NHMDMESIESLNMALEKYEGTLIFVSHDREF 497 (530)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 2333333333334588999998763
No 264
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2e-19 Score=150.04 Aligned_cols=152 Identities=12% Similarity=0.106 Sum_probs=92.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC--C--Ceeeeecccchhcc------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN--V--PWVTLLSMDSFYRV------ 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~--~--~~~~~i~~d~~~~~------ 94 (199)
-++++|++++|++. .++++ +||++++|++++|+|+||||||||+++|+|+.. + +..|.+..++....
T Consensus 39 ~l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGEF--EAVKK-VNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECCE--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 48999999999754 69999 999999999999999999999999999999754 3 24444444432110
Q ss_pred -----ccccccCC-CCCCCchHHHH---------------HHHHHHHHhcCc-eeecCCceeeecceecCCeeeeeeEEe
Q psy9640 95 -----HADIIVPR-GGENCVAIDLI---------------VQHIHSQLQAGV-SVDMPQGYTYEGKRCAVSKICGVSILR 152 (199)
Q Consensus 95 -----~~~~~~~~-~~~~~~~~~~~---------------~~~l~~~~~~~~-~~~~~~~~~~~g~~lSgGq~QrvaiaR 152 (199)
........ ........+.+ .+.+...+.... ...+....+..+..|||||+||++|||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAr 195 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVAR 195 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHH
Confidence 00011111 11100000100 111111111000 001112234467789999999999999
Q ss_pred ccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
|++. +.+.+.+... +.++|+++||.+.
T Consensus 196 aL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~ 243 (286)
T PRK14275 196 TLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQ 243 (286)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHH
Confidence 9975 5555555543 3577999997663
No 265
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.77 E-value=1.6e-19 Score=144.35 Aligned_cols=147 Identities=12% Similarity=0.113 Sum_probs=89.5
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADI 98 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~ 98 (199)
++++|+++.|+. .+.+ +||++.+|++++|+|+||||||||+++|+|.+.+..+.+. .++... .....
T Consensus 1 ~~~~~l~~~~~~----~~~~-~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPME-FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK-VNDQSHTGLAPYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----ccee-eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEEcccCChhccceEE
Confidence 468999999963 4578 9999999999999999999999999999998876544332 222110 00001
Q ss_pred ccCC-CCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640 99 IVPR-GGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------ 156 (199)
Q Consensus 99 ~~~~-~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------ 156 (199)
.... ..... ...+.+ .+.+.+.+. ...+....+..+.+|||||+||++||||+..
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 151 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQ---QVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILL 151 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHH---HcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 0000 01000 000111 011111111 1222222344567899999999999999975
Q ss_pred ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+....-+.+.|.++|+.+.
T Consensus 152 lDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~ 191 (213)
T TIGR01277 152 LDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD 191 (213)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 4455555544335778999998763
No 266
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.77 E-value=6.8e-20 Score=142.99 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=81.6
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch--------hccccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--------YRVHAD 97 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~--------~~~~~~ 97 (199)
+++.+++++|+.. ..+++| |||++++|+++||.|+|||||||++|+|+.++-|+++.+ ..|++ ++...+
T Consensus 2 l~v~~l~K~y~~~-v~Avrd-VSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v-~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRD-VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV-TIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccCH-Hhhhhh-eeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceE-EEeecccccChHHHhhhcc
Confidence 5788999999874 469999 999999999999999999999999999999998875433 22222 222222
Q ss_pred ccc-CCCCCCCchHHHHHHH-----------HHHHHh-cCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640 98 IIV-PRGGENCVAIDLIVQH-----------IHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 98 ~~~-~~~~~~~~~~~~~~~~-----------l~~~~~-~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~ 156 (199)
..+ .++.+...+.++-+.. ++.... ..+..++....+.....+|.||||||+||||+..
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh 150 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVH 150 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhc
Confidence 222 1111211111111000 000000 0122344444455667899999999999999976
No 267
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.6e-19 Score=147.11 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=48.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
-++++|+++.|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus 12 ~l~i~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 12 VYQINGMNLWYGQH--HALKN-INLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred eEEEeeEEEEECCe--eeEEe-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 48999999999754 79999 999999999999999999999999999999986
No 268
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=5e-20 Score=147.44 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=98.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------ccc-
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HAD- 97 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~- 97 (199)
+++++++++|.+- .++++ |||++++|++++|+|||||||||++++|.|.+.|+.+.++..+..... ...
T Consensus 5 L~v~~l~k~FGGl--~Al~~-Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGGL--TAVND-VSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCCE--EEEec-eeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 6789999999887 79999 999999999999999999999999999999999887665544321100 000
Q ss_pred ---cccCCCCCCCc--------------------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeee
Q psy9640 98 ---IIVPRGGENCV--------------------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGV 148 (199)
Q Consensus 98 ---~~~~~~~~~~~--------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrv 148 (199)
++..+...+-. ..++..+.....+ ..+.+....+....+||+||+.|+
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~L---e~vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELL---EFVGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHH---HHcCCchhhcchhhcCChhHhHHH
Confidence 01111111100 1111111111222 234555544556678999999999
Q ss_pred eEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 149 SILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 149 aiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
.||||+.. +.+.+.++-..-.++++.|-||=.
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~ 211 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK 211 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH
Confidence 99999975 444444444445689999999754
No 269
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.1e-19 Score=145.41 Aligned_cols=149 Identities=17% Similarity=0.139 Sum_probs=91.7
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------cccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HADI 98 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~~ 98 (199)
+.++|++++|++. +++++ +++++++|++++|+|+||||||||+++|+|.+.+..+. +..++.... ....
T Consensus 1 l~~~~l~~~~~~~--~il~~-i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~-i~~~g~~~~~~~~~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDG-VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGE-ILLDGKDITNLPPHKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeecc-ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEcCcCChhhcceEE
Confidence 4689999999764 79999 99999999999999999999999999999998765443 323322110 0111
Q ss_pred ccCC-CCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640 99 IVPR-GGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------ 156 (199)
Q Consensus 99 ~~~~-~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------ 156 (199)
.... ..... ...+.+ ...+...+. .+.+....+..+..||+||+||++||||+..
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll 153 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALD---LVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1111 11100 000111 011111111 1223223344667899999999999999975
Q ss_pred ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+....-+.+.|.++|+.+.
T Consensus 154 lDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~ 193 (232)
T cd03300 154 LDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE 193 (232)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3334443333225677999998764
No 270
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.3e-19 Score=150.89 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=48.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.+.++|+++.|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus 45 ~l~i~nl~~~~~~~--~iL~~-is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~ 96 (305)
T PRK14264 45 KLSVEDLDVYYGDD--HALKG-VSMDIPEKSVTALIGPSGCGKSTFLRCLNRMND 96 (305)
T ss_pred eEEEEEEEEEeCCe--eeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 48999999999764 79999 999999999999999999999999999999875
No 271
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=1.1e-19 Score=144.39 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=51.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~ 84 (199)
-++++|++..|... ++|++ |||++++|++++++|+||+|||||++.|+|...+..+.
T Consensus 3 mL~v~~l~~~YG~~--~~L~g-vsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~ 59 (237)
T COG0410 3 MLEVENLSAGYGKI--QALRG-VSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGR 59 (237)
T ss_pred ceeEEeEeecccce--eEEee-eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCee
Confidence 47899999999876 89999 99999999999999999999999999999998776443
No 272
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2e-19 Score=160.61 Aligned_cols=148 Identities=13% Similarity=0.062 Sum_probs=92.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----------cc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----------RV 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----------~~ 94 (199)
-++++|+++.|++. ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++.. ..
T Consensus 4 ~l~~~~l~~~~~~~--~il~~-isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 4 YLSFDGIGKTFPGV--KALDD-ISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS-ILIDGQEMRFASTTAALAA 79 (501)
T ss_pred eEEEeeeEEEECCE--EEEee-eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEECCCCCHHHHHhC
Confidence 47899999999754 79999 99999999999999999999999999999988665433 2222110 00
Q ss_pred cccc-ccCCCCCC-----------------C-chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640 95 HADI-IVPRGGEN-----------------C-VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE 155 (199)
Q Consensus 95 ~~~~-~~~~~~~~-----------------~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~ 155 (199)
.... ........ . .......+.+.+.+. .+.++...+..+.+|||||+||++||||++
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLE---HLGVDIDPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHH---HcCCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence 0000 00000000 0 001111111211121 122322234456789999999999999997
Q ss_pred h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
. +.+.+.+.. +-+.++|.++||.+
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~tiiiitHd~~ 201 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELR-AEGRVILYVSHRME 201 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHH
Confidence 5 445555543 23678899999865
No 273
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.77 E-value=2.2e-19 Score=162.13 Aligned_cols=56 Identities=20% Similarity=0.092 Sum_probs=49.9
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
-++++||++.|++. +++|++ +||++++|++++|+||||||||||+++|+|.+.+..
T Consensus 6 ~l~i~~l~~~y~~~-~~il~~-vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~ 61 (556)
T PRK11819 6 IYTMNRVSKVVPPK-KQILKD-ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE 61 (556)
T ss_pred EEEEeeEEEEeCCC-CeeeeC-ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 38899999999721 379999 999999999999999999999999999999887643
No 274
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.77 E-value=1.3e-19 Score=156.25 Aligned_cols=149 Identities=12% Similarity=0.082 Sum_probs=95.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch----h--------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF----Y-------- 92 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~----~-------- 92 (199)
+..-.++.++|+.. .++++ +||++++|++++|+|+||||||||+++|+|++.+..+.+. .++. .
T Consensus 24 g~~~~~~~~~~g~~--~~l~~-vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~-idG~~~~~~i~~~~~~~ 99 (382)
T TIGR03415 24 GKTREEILDETGLV--VGVAN-ASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVL-VKDGDGSIDVANCDAAT 99 (382)
T ss_pred CCCHHHHHHhhCCE--EEEEe-eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE-ECCEecccccccCCHHH
Confidence 34445667777655 78999 9999999999999999999999999999998877654433 2221 0
Q ss_pred -----ccccccccCCCCCCC--chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEE
Q psy9640 93 -----RVHADIIVPRGGENC--VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSIL 151 (199)
Q Consensus 93 -----~~~~~~~~~~~~~~~--~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrvaia 151 (199)
+....+.+......+ ...+.+ ...+.+.+ ..+.+....+..+.+|||||+|||+||
T Consensus 100 l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~l---e~vgL~~~~~~~~~~LSgGq~QRV~LA 176 (382)
T TIGR03415 100 LRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQL---ELVGLAQWADKKPGELSGGMQQRVGLA 176 (382)
T ss_pred HHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHH---HHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 001111111111111 001111 11111111 122333334556779999999999999
Q ss_pred eccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
||+.. +.+.+.++....+.+.|+++||.+
T Consensus 177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99976 667777776666788899999765
No 275
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.77 E-value=2.8e-19 Score=151.88 Aligned_cols=149 Identities=15% Similarity=0.121 Sum_probs=98.5
Q ss_pred Ccccccceeecccc---------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc
Q psy9640 25 GRDLEGVIKQYVNM---------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~---------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~ 95 (199)
-++.++|...|+-. ...++++ +||++++|+.+||+|+||||||||-+.|++++... |.+..++.....
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~-isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~--G~I~F~G~~i~~ 352 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDG-ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ--GEIRFDGQDIDG 352 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEecc-ceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC--ceEEECCccccc
Confidence 48889999988522 1257899 99999999999999999999999999999988654 333332211100
Q ss_pred c---c-cc--------c--CCCCCC-------------------CchHHHHHHHHHHHHhcCceeecCC-ceeeecceec
Q psy9640 96 A---D-II--------V--PRGGEN-------------------CVAIDLIVQHIHSQLQAGVSVDMPQ-GYTYEGKRCA 141 (199)
Q Consensus 96 ~---~-~~--------~--~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~g~~lS 141 (199)
. . .+ + +.+..+ ....+...+.. +.+. .+.++. ..+..|+++|
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~-~aL~---EVGLDp~~r~RYPhEFS 428 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVI-EALE---EVGLDPATRNRYPHEFS 428 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHH-HHHH---HcCCChhHhhcCCcccC
Confidence 0 0 00 0 011111 11111111111 2222 133332 2344688999
Q ss_pred CCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 142 VSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 142 gGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
||||||+|||||+.. ..++|.++..+-+++-+||.||=.
T Consensus 429 GGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~ 488 (534)
T COG4172 429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA 488 (534)
T ss_pred cchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 999999999999964 778889999999999999999854
No 276
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.6e-19 Score=146.41 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=47.2
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
-++++|++++|++. +++++ +||++++|++++|+|+||||||||+++|+|..
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~-~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14239 5 ILQVSDLSVYYNKK--KALNS-VSLDFYPNEITALIGPSGSGKSTLLRSINRMN 55 (252)
T ss_pred eEEEEeeEEEECCe--eeeee-eeEEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 37899999999754 79999 99999999999999999999999999999975
No 277
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.76 E-value=2.6e-19 Score=147.99 Aligned_cols=56 Identities=16% Similarity=0.284 Sum_probs=49.6
Q ss_pred cccccceeeccc-------cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 26 RDLEGVIKQYVN-------MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 26 i~l~nvs~~y~~-------~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
++++||++.|+. ..++++++ +||++++|++++|+|+||||||||+++|+|.+.+..
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~s 66 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNN-VSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ 66 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEec-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 789999999973 12579999 999999999999999999999999999999876544
No 278
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.76 E-value=2e-19 Score=145.97 Aligned_cols=137 Identities=11% Similarity=0.078 Sum_probs=82.2
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh--------cccccccc-C-CCCCCCch
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY--------RVHADIIV-P-RGGENCVA 109 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~--------~~~~~~~~-~-~~~~~~~~ 109 (199)
+++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++.. ........ . ........
T Consensus 34 ~~il~~-vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 34 VEALKG-ISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE-VRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred eeeeec-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEECCEEccccchhhcccEEEEcCCccccCCCCc
Confidence 369999 99999999999999999999999999999988765443 3222211 00011111 1 01110000
Q ss_pred -HH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------------------
Q psy9640 110 -ID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------------------ 156 (199)
Q Consensus 110 -~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------------------ 156 (199)
.+ ...+.+...+. ...++...+.....|||||+||++||||++.
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 188 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSE---LLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 01 11111111111 1223333355667899999999999999975
Q ss_pred ---hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+....-+.+.|.++||.+.
T Consensus 189 ~~~l~~~l~~~~~~~~~tiiivsH~~~~ 216 (236)
T cd03267 189 QENIRNFLKEYNRERGTTVLLTSHYMKD 216 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 4444444433335678999998763
No 279
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.4e-19 Score=161.12 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=49.3
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
|+++|++++|++. ++|++ +||++++|++++|+||||||||||+++|+|.+.+..
T Consensus 2 l~i~~ls~~~~~~--~il~~-vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~ 55 (530)
T PRK15064 2 LSTANITMQFGAK--PLFEN-ISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSA 55 (530)
T ss_pred EEEEEEEEEeCCc--EeEeC-CEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 6789999999754 79999 999999999999999999999999999999887654
No 280
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.9e-19 Score=148.18 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=49.0
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
-++++|+++.|++. ++|++ +||++++|++++|+|+||||||||+++|+|++.+
T Consensus 20 ~l~~~nl~~~~~~~--~~l~~-vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~ 72 (274)
T PRK14265 20 VFEVEGVKVFYGGF--LALVD-VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDL 72 (274)
T ss_pred eEEEeeEEEEeCCe--EEEee-eeeEEcCCCEEEEECCCCCCHHHHHHHHhccccc
Confidence 59999999999764 79999 9999999999999999999999999999998753
No 281
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.76 E-value=2.2e-19 Score=153.99 Aligned_cols=142 Identities=12% Similarity=0.007 Sum_probs=87.6
Q ss_pred cceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------------ccc
Q psy9640 30 GVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------------VHA 96 (199)
Q Consensus 30 nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------------~~~ 96 (199)
|++++|++. . + + +||++++|++++|+||||||||||+++|+|++.+..+. +..++... ...
T Consensus 4 ~l~~~~~~~--~-~-~-isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~-I~~~g~~i~~~~~~~~~~~~~~~i 77 (354)
T TIGR02142 4 RFSKRLGDF--S-L-D-ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGE-IVLNGRTLFDSRKGIFLPPEKRRI 77 (354)
T ss_pred EEEEEECCE--E-E-E-EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECccCccccccchhhCCe
Confidence 789999654 3 4 8 99999999999999999999999999999988765443 33322110 000
Q ss_pred ccccCC-CCC-CCchHHHH------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640 97 DIIVPR-GGE-NCVAIDLI------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------ 156 (199)
Q Consensus 97 ~~~~~~-~~~-~~~~~~~~------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------ 156 (199)
...... ... +....+.+ ...+.+.+. ...+....+..+.+|||||+|||+||||++.
T Consensus 78 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll 154 (354)
T TIGR02142 78 GYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIE---LLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL 154 (354)
T ss_pred EEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHH---HcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 111111 000 00000111 001111111 1233333345677999999999999999975
Q ss_pred ---------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ---------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+...+-+.++|.++||.+
T Consensus 155 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~ 193 (354)
T TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ 193 (354)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 455555555544678899999875
No 282
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3.2e-19 Score=145.90 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=48.4
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
-++++|+++.|++. +++++ +||++.+|++++|+|+||||||||+++|+|...+
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 56 (251)
T PRK14270 4 KMESKNLNLWYGEK--QALND-INLPIYENKITALIGPSGCGKSTFLRCLNRMNDL 56 (251)
T ss_pred EEEEEEeEEEECCe--eeeec-eeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc
Confidence 37899999999754 79999 9999999999999999999999999999998764
No 283
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.4e-19 Score=147.55 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=49.2
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.++++|++++|++. .+|++ +||++++|++++|+|+||||||||+++|+|.+.+
T Consensus 7 ~l~~~nl~~~~~~~--~il~~-is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 7 AIKVNNLSFYYDTQ--KILEG-VSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred eEEEeeEEEEeCCe--eEeec-eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 48999999999754 69999 9999999999999999999999999999999875
No 284
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.76 E-value=1.9e-19 Score=147.20 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=46.7
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
-++++|+++.|++. ++|++ +||++++|++++|+|+||||||||+++|+|.
T Consensus 7 ~l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 7 ILEIKNLHASVNEN--EILKG-LNLSINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eEEEEeEEEEeCCE--Eeeec-ceeEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 38899999999754 79999 9999999999999999999999999999997
No 285
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.5e-19 Score=165.52 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=88.9
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCC-C
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPR-G 103 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~-~ 103 (199)
-++++||++.|++. .+|++ +||++.+|++++|+||||||||||+++|+|.+.+..+.+...+.... ..+.... .
T Consensus 312 ~l~~~~l~~~y~~~--~il~~-isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i--gy~~Q~~~~ 386 (638)
T PRK10636 312 LLKMEKVSAGYGDR--IILDS-IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKL--GYFAQHQLE 386 (638)
T ss_pred eEEEEeeEEEeCCe--eeecc-ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEE--EEecCcchh
Confidence 38999999999754 79999 99999999999999999999999999999988665433221111000 0000000 0
Q ss_pred C--CCCchHHH--------HHHHHHHHHhcCceeecCC-ceeeecceecCCeeeeeeEEeccch----------------
Q psy9640 104 G--ENCVAIDL--------IVQHIHSQLQAGVSVDMPQ-GYTYEGKRCAVSKICGVSILRAGET---------------- 156 (199)
Q Consensus 104 ~--~~~~~~~~--------~~~~l~~~~~~~~~~~~~~-~~~~~g~~lSgGq~QrvaiaRA~~~---------------- 156 (199)
. .+....+. ....+...+. ...++. ..+..+..|||||+|||+||||++.
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~---~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~ 463 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLG---GFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDL 463 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHH---HcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 0 00000000 0111111111 112221 2234567899999999999999975
Q ss_pred -hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
....+.+.+-...-++|+|+||..
T Consensus 464 ~~~~~l~~~L~~~~gtvi~vSHd~~ 488 (638)
T PRK10636 464 DMRQALTEALIDFEGALVVVSHDRH 488 (638)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 222233332222347899999865
No 286
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.76 E-value=2.4e-19 Score=139.61 Aligned_cols=110 Identities=19% Similarity=0.156 Sum_probs=79.0
Q ss_pred ccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCCCCc
Q psy9640 29 EGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCV 108 (199)
Q Consensus 29 ~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~ 108 (199)
.|++++|.+. .++++ . +++++|++++|+||||||||||+++|+|.+.+..+. +..++... .
T Consensus 4 ~~l~~~~~~~--~~l~~-~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i---~----------- 64 (177)
T cd03222 4 PDCVKRYGVF--FLLVE-L-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN-DEWDGITP---V----------- 64 (177)
T ss_pred CCeEEEECCE--EEEcc-C-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcE-EEECCEEE---E-----------
Confidence 6899999765 67888 5 899999999999999999999999999988765543 33332100 0
Q ss_pred hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHhhccc
Q psy9640 109 AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHDVCKD 167 (199)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~p~ 167 (199)
-.+.. ..|||||+||++||||+.. +.+.+.+...+
T Consensus 65 -------------------~~~q~-----~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 120 (177)
T cd03222 65 -------------------YKPQY-----IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEE 120 (177)
T ss_pred -------------------EEccc-----CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHc
Confidence 00000 0189999999999999975 44455555443
Q ss_pred cceeEEEEEeCCCC
Q psy9640 168 IRIGKILIQTNKAT 181 (199)
Q Consensus 168 ~~~~~~~~~~~~~~ 181 (199)
-+.+.|.++||.+.
T Consensus 121 ~~~tiiivsH~~~~ 134 (177)
T cd03222 121 GKKTALVVEHDLAV 134 (177)
T ss_pred CCCEEEEEECCHHH
Confidence 23678999998763
No 287
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.76 E-value=2e-19 Score=164.66 Aligned_cols=148 Identities=13% Similarity=0.054 Sum_probs=90.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCC-C
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPR-G 103 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~-~ 103 (199)
-++++||++.|++. ++|++ +||++.+|++++|+||||||||||+++|+|.+.|..+.+.. +... ....+.... .
T Consensus 319 ~l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-~i~y~~q~~~~ 393 (635)
T PRK11147 319 VFEMENVNYQIDGK--QLVKD-FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-EVAYFDQHRAE 393 (635)
T ss_pred eEEEeeeEEEECCe--EEEcC-cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-EEEEEeCcccc
Confidence 38999999999764 79999 99999999999999999999999999999988665443322 2100 000000000 0
Q ss_pred CC-CCchHHHH------------HHHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEEeccch-------------
Q psy9640 104 GE-NCVAIDLI------------VQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSILRAGET------------- 156 (199)
Q Consensus 104 ~~-~~~~~~~~------------~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~QrvaiaRA~~~------------- 156 (199)
.. +....+.+ ...+...+.. ..+. ...+.....|||||+||++||||++.
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~---~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~ 470 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQD---FLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTND 470 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHh---cCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 00 00000100 0111111111 1121 12234567899999999999999975
Q ss_pred ----hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ----MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ----~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
..+.+.+.+.+...++|+|+||..
T Consensus 471 LD~~~~~~l~~~l~~~~~tvi~vSHd~~ 498 (635)
T PRK11147 471 LDVETLELLEELLDSYQGTVLLVSHDRQ 498 (635)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 333444444444557899999865
No 288
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.76 E-value=2.9e-19 Score=140.31 Aligned_cols=135 Identities=10% Similarity=0.020 Sum_probs=81.3
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----------cccccccCCC---CC
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-----------VHADIIVPRG---GE 105 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-----------~~~~~~~~~~---~~ 105 (199)
+.+|++ +||++++|++++|+|+||||||||+++|+|.+.+..+.+ ..++... .......... ..
T Consensus 5 ~~il~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKG-LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV-LIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeE-EECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 368999 999999999999999999999999999999887654433 2222110 0001111110 01
Q ss_pred CCchHHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------
Q psy9640 106 NCVAIDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------------- 156 (199)
Q Consensus 106 ~~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------------- 156 (199)
.....+. ..+.+...+. .+.++...+..+.+|||||+||++||||+..
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 159 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALT---AVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 0000011 1111111111 1223333344677899999999999999975
Q ss_pred ------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.... +.+.|.++||.+
T Consensus 160 ~~~~~~~~~~l~~~~~~-~~tili~sH~~~ 188 (190)
T TIGR01166 160 PAGREQMLAILRRLRAE-GMTVVISTHDVD 188 (190)
T ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEeeccc
Confidence 44444444322 678899999875
No 289
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.1e-19 Score=145.35 Aligned_cols=147 Identities=13% Similarity=0.143 Sum_probs=88.0
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADI 98 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~ 98 (199)
++++||+++|++. . .+ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++... .....
T Consensus 2 l~~~~l~~~~~~~--~--~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL--P--MR-FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGS-LTLNGQDHTTTPPSRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc--c--ce-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCeecCcCChhhccEEE
Confidence 5789999999743 2 38 99999999999999999999999999999988665433 22222110 00000
Q ss_pred ccCC-CCCCCch-HHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640 99 IVPR-GGENCVA-IDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------ 156 (199)
Q Consensus 99 ~~~~-~~~~~~~-~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------ 156 (199)
.... ....... .+. ..+.+.+.+. .+.++...+..+.+|||||+||++||||+..
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 152 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIAR---QMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILL 152 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHH---HcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 0000 0000000 000 0111111111 1222222344567899999999999999975
Q ss_pred ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+....-+.++|.++||.+.
T Consensus 153 LDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 192 (232)
T PRK10771 153 LDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED 192 (232)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 3444444444335678999998763
No 290
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=3.9e-19 Score=140.26 Aligned_cols=148 Identities=7% Similarity=-0.029 Sum_probs=89.4
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc-----ccc-c
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH-----ADI-I 99 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~-----~~~-~ 99 (199)
++++|++++|++ ..+.+ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++..... ... .
T Consensus 2 l~~~~l~~~~~~---~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~ 76 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGN-IYYKNCNINNIAKPYCTYIG 76 (195)
T ss_pred eEEEEeeEEECC---cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCcccChhhhhhEEecc
Confidence 678999999964 34568 99999999999999999999999999999988766543 3333321100 000 0
Q ss_pred cCCCCCCCch-HHHHH---------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-------------
Q psy9640 100 VPRGGENCVA-IDLIV---------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------------- 156 (199)
Q Consensus 100 ~~~~~~~~~~-~~~~~---------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------------- 156 (199)
.......... .+.+. +.+...+. ...+....+..+.+|||||+||++||||++.
T Consensus 77 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~ 153 (195)
T PRK13541 77 HNLGLKLEMTVFENLKFWSEIYNSAETLYAAIH---YFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETN 153 (195)
T ss_pred CCcCCCccCCHHHHHHHHHHhcccHHHHHHHHH---HcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 0000000000 11110 00101111 1122222344677899999999999999975
Q ss_pred --------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 --------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 --------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+.+.+.+. ..-+.+.|.++|+....
T Consensus 154 LD~~~~~~l~~~l~~~-~~~~~tiii~sh~~~~i 186 (195)
T PRK13541 154 LSKENRDLLNNLIVMK-ANSGGIVLLSSHLESSI 186 (195)
T ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEeCCcccc
Confidence 33333322 23357889999987754
No 291
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.76 E-value=2.4e-19 Score=145.61 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=49.4
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++|++++|++. ++|++ +||++.+|++++|+|+||||||||+++|+|.+.+..+
T Consensus 1 i~i~~l~~~~~~~--~il~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 55 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDD-VNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG 55 (237)
T ss_pred CEEEEEEEEECCe--eeeee-EEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 4689999999764 79999 9999999999999999999999999999998866544
No 292
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.1e-19 Score=144.01 Aligned_cols=156 Identities=13% Similarity=0.043 Sum_probs=98.2
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeeccc-------c-h-hccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMD-------S-F-YRVH 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d-------~-~-~~~~ 95 (199)
-|+++||+.+|.+. ++|++ +|-+|++|+..+|+||||||||||++++++...+....+.... . + .+..
T Consensus 31 li~l~~v~v~r~gk--~iL~~-isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRNGK--KILGD-LSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEECCE--eeccc-cceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 49999999999877 89999 9999999999999999999999999999998876422111110 0 0 0000
Q ss_pred ccc-------ccCC----------C------CCC-CchH---HHHHHHHHHHHhcCceeecCCceeeecceecCCeeeee
Q psy9640 96 ADI-------IVPR----------G------GEN-CVAI---DLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGV 148 (199)
Q Consensus 96 ~~~-------~~~~----------~------~~~-~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrv 148 (199)
.+. .+.. + .+. ..+. +.....+ +.+......+.|. ..||-||+|||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~ll-e~~g~~~la~r~~------~~LS~Ge~rrv 180 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLL-ELLGAKHLADRPF------GSLSQGEQRRV 180 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHH-HHcchhhhccCch------hhcCHhHHHHH
Confidence 000 0000 0 011 1111 1111112 2222222223333 27999999999
Q ss_pred eEEeccch-----------------hHHHHHhhccccce-----eEEEEEeCCCCCCchhhhhc
Q psy9640 149 SILRAGET-----------------MEQAVHDVCKDIRI-----GKILIQTNKATDEPELYYLR 190 (199)
Q Consensus 149 aiaRA~~~-----------------~~~~l~~~~p~~~~-----~~~~~~~~~~~~~~~~~~~~ 190 (199)
-||||+.. -.+.|++.++++-. +.|+|+|..+...|...|+-
T Consensus 181 LiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 181 LIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 99999976 23345555554444 48999999988877766654
No 293
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=5.5e-19 Score=138.02 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=47.3
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~ 84 (199)
++++|++++| ++++ ++|++++|++++|+|+||||||||+++|+|.+.+..+.
T Consensus 5 l~~~~l~~~~------~l~~-vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 56 (182)
T cd03215 5 LEVRGLSVKG------AVRD-VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE 56 (182)
T ss_pred EEEeccEEEe------eecc-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 7899999988 7899 99999999999999999999999999999998765443
No 294
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.7e-19 Score=148.11 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=49.0
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.++++|+++.|++. +++++ +||++++|++++|+|+||||||||+++|+|.+.+
T Consensus 25 ~l~~~nl~~~~~~~--~il~~-vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~ 77 (272)
T PRK14236 25 ALEVRNLNLFYGDK--QALFD-ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDL 77 (272)
T ss_pred EEEEEEEEEEECCe--eEeee-EEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 48999999999754 79999 9999999999999999999999999999998764
No 295
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=5e-19 Score=144.66 Aligned_cols=51 Identities=24% Similarity=0.189 Sum_probs=46.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
-++++|+++.|+.. +++++ +||++++|++++|+|+||||||||+++|+|+.
T Consensus 3 ~l~~~~~~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14245 3 KIDARDVNFWYGDF--HALKG-ISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMN 53 (250)
T ss_pred EEEEEEEEEEECCE--eEEee-eeEEEeCCCEEEEECCCCCCHHHHHHHHhhhh
Confidence 47899999999754 79999 99999999999999999999999999999873
No 296
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3.7e-19 Score=158.46 Aligned_cols=145 Identities=10% Similarity=0.089 Sum_probs=90.0
Q ss_pred cccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------cccc
Q psy9640 28 LEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------VHAD 97 (199)
Q Consensus 28 l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~~~~ 97 (199)
++|++++|++. ++|++ +||++++|++++|+|+||||||||+++|+|++.+..+. +..++... ....
T Consensus 1 ~~nl~~~~~~~--~il~~-vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~ 76 (491)
T PRK10982 1 MSNISKSFPGV--KALDN-VNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS-ILFQGKEIDFKSSKEALENGIS 76 (491)
T ss_pred CCceEEEeCCE--Eeeee-eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceE-EEECCEECCCCCHHHHHhCCEE
Confidence 57999999754 79999 99999999999999999999999999999988765433 32222100 0000
Q ss_pred c-ccCCCCC-C---------------C--chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640 98 I-IVPRGGE-N---------------C--VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 98 ~-~~~~~~~-~---------------~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
. ....... . . .......+.+.+.+. ...+....+..+.+|||||+|||+||||+..
T Consensus 77 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 77 MVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFD---ELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred EEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHH---HcCCCCCccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 0 0000000 0 0 001111112212221 1223333344577899999999999999975
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++. .-+.++|.++||.+
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvii~tH~~~ 195 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLK-ERGCGIVYISHKME 195 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHH
Confidence 444455543 23678899999865
No 297
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.2e-19 Score=159.39 Aligned_cols=152 Identities=10% Similarity=0.065 Sum_probs=93.9
Q ss_pred Ccccccceeeccc-cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640 25 GRDLEGVIKQYVN-MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------- 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~-~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------- 93 (199)
-++++|+++.|+. ...+++++ +||++++|++++|+|+||||||||+++|+|.+.++..|.+..++...
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~-vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDD-VSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred eEEEecCccccccccccccccc-eeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 3899999999953 12469999 99999999999999999999999999999998743334443332100
Q ss_pred ccccc-ccCC---CCCCCch-HH-------------------HHHHHHHHHHhcCceeecC-CceeeecceecCCeeeee
Q psy9640 94 VHADI-IVPR---GGENCVA-ID-------------------LIVQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGV 148 (199)
Q Consensus 94 ~~~~~-~~~~---~~~~~~~-~~-------------------~~~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~Qrv 148 (199)
..... .... ......+ .+ ...+.+.+.+. ...+. ...+..+.+|||||+|||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LSgG~kqrv 414 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQ---RLKVKTASPELAIARLSGGNQQKA 414 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHH---hcCccCCCcccccccCCHHHHHHH
Confidence 00001 0010 0000000 00 00111111111 12232 223445779999999999
Q ss_pred eEEeccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 149 SILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 149 aiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+||||++. +.+.+.+.... +.++|.++||...
T Consensus 415 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~ 467 (506)
T PRK13549 415 VLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPE 467 (506)
T ss_pred HHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHHH
Confidence 99999975 45555554433 6788999998653
No 298
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.76 E-value=9.5e-20 Score=162.18 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=47.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
-++++|+++.|++. .+|++ +||++++|++++|+||||||||||+++|+|...
T Consensus 260 ~l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~ 311 (490)
T PRK10938 260 RIVLNNGVVSYNDR--PILHN-LSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred eEEEeceEEEECCe--eEEee-ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 48999999999754 69999 999999999999999999999999999999654
No 299
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3.6e-19 Score=145.74 Aligned_cols=52 Identities=19% Similarity=0.107 Sum_probs=48.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
-++++|+++.|++. .+|++ +||++.+|++++|+|+||||||||+++|+|...
T Consensus 6 ~i~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14261 6 ILSTKNLNLWYGEK--HALYD-ITISIPKNRVTALIGPSGCGKSTLLRCFNRMND 57 (253)
T ss_pred eEEEeeeEEEECCe--eeeee-eEEEECCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence 47899999999754 79999 999999999999999999999999999999865
No 300
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.76 E-value=3.3e-19 Score=160.17 Aligned_cols=151 Identities=12% Similarity=0.094 Sum_probs=93.6
Q ss_pred Ccccccceeeccc---------cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--
Q psy9640 25 GRDLEGVIKQYVN---------MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-- 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~---------~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-- 93 (199)
-++++|+++.|+. ..+.+|++ +||++++|++++|+||||||||||+++|+|++ +. .|.+..++...
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~-isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~-~G~i~~~g~~i~~ 351 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKN-ISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NS-QGEIWFDGQPLHN 351 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeec-ceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CC-CcEEEECCEEccc
Confidence 3899999999952 12479999 99999999999999999999999999999987 33 34444333110
Q ss_pred ----------ccccc-ccCC--CCCCC-chHHHHH----------------HHHHHHHhcCceeecCC-ceeeecceecC
Q psy9640 94 ----------VHADI-IVPR--GGENC-VAIDLIV----------------QHIHSQLQAGVSVDMPQ-GYTYEGKRCAV 142 (199)
Q Consensus 94 ----------~~~~~-~~~~--~~~~~-~~~~~~~----------------~~l~~~~~~~~~~~~~~-~~~~~g~~lSg 142 (199)
..... .... ..... ...+.+. +.+.+.+. ...++. ..+..+.+|||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LSg 428 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVME---EVGLDPETRHRYPAEFSG 428 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHH---HcCCCHHHHhcCCccCCH
Confidence 00011 1111 00000 0111110 11111111 122321 22445679999
Q ss_pred CeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 143 SKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 143 Gq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
||+|||+||||++. +.+.+.+....-+.++|.++||.+.
T Consensus 429 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~ 488 (529)
T PRK15134 429 GQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV 488 (529)
T ss_pred HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 99999999999975 5555555544336788999998663
No 301
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.76 E-value=5.3e-19 Score=136.44 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=100.0
Q ss_pred cCcccccceeecccc-------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch-----
Q psy9640 24 RGRDLEGVIKQYVNM-------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF----- 91 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~-------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~----- 91 (199)
.-++++|++++|..+ ...+++. |||+.++|+.++|+|.||||||||+++|+|...|..+.++..|..
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~-vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~D 81 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKP-VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGD 81 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccc-eEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccc
Confidence 357889999987422 2468889 999999999999999999999999999999998776554433211
Q ss_pred --hc-ccccccc--CCCCCC-----------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeee
Q psy9640 92 --YR-VHADIIV--PRGGEN-----------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVS 149 (199)
Q Consensus 92 --~~-~~~~~~~--~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrva 149 (199)
++ ....+.+ ++...| ..+.+.-.+.+.+.+. ..--+|..-+..+..||.||+||||
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~--~VGL~Pdhan~~~~~la~~QKQRVa 159 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLR--MVGLLPDHANYYPHMLAPGQKQRVA 159 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHH--HhccCccccccchhhcCchhHHHHH
Confidence 11 0111111 111111 1122222222222221 1123455556678899999999999
Q ss_pred EEeccch---------------------hHHHHHhhccccceeEEEEEe
Q psy9640 150 ILRAGET---------------------MEQAVHDVCKDIRIGKILIQT 177 (199)
Q Consensus 150 iaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~ 177 (199)
+|||+.. +..+.+.+..+.+|+.|.|+.
T Consensus 160 LARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Q 208 (267)
T COG4167 160 LARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208 (267)
T ss_pred HHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEec
Confidence 9999964 556677888899999998883
No 302
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=3.9e-19 Score=144.19 Aligned_cols=148 Identities=9% Similarity=0.067 Sum_probs=91.1
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------cccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HADI 98 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~~ 98 (199)
|+++|+++.|++ +++++ ++|++.+|++++|+|+||||||||+++|+|.+.+..+. +..++.... ....
T Consensus 1 l~~~~l~~~~~~---~~l~~-is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~-v~i~g~~~~~~~~~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKN-VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK-ILLNGKDITNLPPEKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEECCEEcCcCChhHcCEEE
Confidence 468999999964 37999 99999999999999999999999999999987765443 333321110 0011
Q ss_pred ccCC-CCCCCch-HHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640 99 IVPR-GGENCVA-IDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------ 156 (199)
Q Consensus 99 ~~~~-~~~~~~~-~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------ 156 (199)
.... ....... .+. ..+.+.+.+. .+.++...+..+..|||||+||++||||+..
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 152 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAE---MLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILL 152 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 1111 1110000 010 1111111111 1223333344667899999999999999975
Q ss_pred ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.....+.+.|.++|+...
T Consensus 153 lDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~ 192 (235)
T cd03299 153 LDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE 192 (235)
T ss_pred ECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 4444555444335677999997653
No 303
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=3.7e-19 Score=162.93 Aligned_cols=56 Identities=9% Similarity=0.089 Sum_probs=50.2
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~ 84 (199)
|+++||+++|++. .+|++ +||++.+|+++||+|+||||||||+++|+|.+.|..+.
T Consensus 2 i~i~nls~~~g~~--~~l~~-vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~ 57 (638)
T PRK10636 2 IVFSSLQIRRGVR--VLLDN-ATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGS 57 (638)
T ss_pred EEEEEEEEEeCCc--eeecC-cEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 6789999999765 79999 99999999999999999999999999999987765443
No 304
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=5.4e-19 Score=138.97 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=49.3
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
|+.+|++++-.+. ..+++ +||++.+||+++|+||||||||||++.|.|.+.|..
T Consensus 2 i~a~nls~~~~Gr--~ll~~-vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~ 55 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDG-VSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS 55 (259)
T ss_pred eeeeeeEEEeecc--eeccC-cceeccCCcEEEEECCCCccHHHHHHHhhCccCCCC
Confidence 6788999988766 79999 999999999999999999999999999999998654
No 305
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=6e-19 Score=144.31 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=46.6
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
-+++|+++.|++. +++++ ++|++.+|++++|+|+||||||||+++|+|...
T Consensus 6 ~~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 6 ASVKNLNLWYGSK--QILFD-INLDIYKREVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred EEeeeEEEEECCe--eeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3578999999753 79999 999999999999999999999999999999875
No 306
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.75 E-value=7.6e-19 Score=158.55 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=49.4
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
++++|++++|++. +++|++ +||++++|++++|+|+||||||||+++|+|.+.+..
T Consensus 5 i~~~nls~~~~~~-~~il~~-is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~ 59 (552)
T TIGR03719 5 YTMNRVSKVVPPK-KEILKD-ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFN 59 (552)
T ss_pred EEEeeEEEecCCC-CeeecC-ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 7899999999722 379999 999999999999999999999999999999886654
No 307
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=6.9e-19 Score=143.79 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=47.2
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
++++||++.|++. +++++ +||++.+|++++|+|+||||||||+++|+|...
T Consensus 4 l~~~~v~~~~~~~--~~l~~-~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (250)
T PRK14266 4 IEVENLNTYFDDA--HILKN-VNLDIPKNSVTALIGPSGCGKSTFIRTLNRMND 54 (250)
T ss_pred EEEEeEEEEeCCe--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 6789999999754 79999 999999999999999999999999999999864
No 308
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=8.1e-19 Score=133.03 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=49.4
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLL 86 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i 86 (199)
.|+++|+++.|..+ ++|-| |+++-+.|+.+.+.||||+|||||+|.| +++..+..|.+
T Consensus 2 sirv~~in~~yg~~--q~lfd-i~l~~~~getlvllgpsgagkssllr~l-nlle~p~sg~l 59 (242)
T COG4161 2 SIQLNGINCFYGAH--QALFD-ITLDCPEGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTL 59 (242)
T ss_pred ceEEcccccccccc--hheee-eeecCCCCCEEEEECCCCCchHHHHHHH-HHHhCCCCCeE
Confidence 47899999999887 79999 9999999999999999999999999887 55555544444
No 309
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.74 E-value=7.9e-19 Score=160.79 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=50.6
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~ 84 (199)
|+++|++++|++. ++|++ +||++.+|++++|+||||||||||+++|+|.+.+..+.
T Consensus 4 l~i~~ls~~~~~~--~il~~-is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~ 59 (635)
T PRK11147 4 ISIHGAWLSFSDA--PLLDN-AELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGR 59 (635)
T ss_pred EEEeeEEEEeCCc--eeEeC-cEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeE
Confidence 7899999999764 79999 99999999999999999999999999999988765543
No 310
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.74 E-value=7.5e-19 Score=145.04 Aligned_cols=136 Identities=13% Similarity=0.003 Sum_probs=79.5
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch--hccccccccCC-CC---------CCC
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--YRVHADIIVPR-GG---------ENC 107 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~--~~~~~~~~~~~-~~---------~~~ 107 (199)
++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+.+. .++. +.......... .. ...
T Consensus 37 ~~il~~-is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~-~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~ 114 (264)
T PRK13546 37 FFALDD-ISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD-RNGEVSVIAISAGLSGQLTGIENIEFKMLCMG 114 (264)
T ss_pred eEEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE-ECCEEeEEecccCCCCCCcHHHHHHHHHHHcC
Confidence 468999 9999999999999999999999999999998876654332 2221 00000000000 00 000
Q ss_pred chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHhhcc
Q psy9640 108 VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHDVCK 166 (199)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~p 166 (199)
...+.....+...+. ...+....+..+.+|||||+||++||||++. +.+.+.+..
T Consensus 115 ~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~- 190 (264)
T PRK13546 115 FKRKEIKAMTPKIIE---FSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK- 190 (264)
T ss_pred CCHHHHHHHHHHHHH---HcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH-
Confidence 111111111111111 1122222344567899999999999999975 223333332
Q ss_pred ccceeEEEEEeCCCC
Q psy9640 167 DIRIGKILIQTNKAT 181 (199)
Q Consensus 167 ~~~~~~~~~~~~~~~ 181 (199)
..+.+.|.++|+.+.
T Consensus 191 ~~g~tiIiisH~~~~ 205 (264)
T PRK13546 191 EQNKTIFFVSHNLGQ 205 (264)
T ss_pred HCCCEEEEEcCCHHH
Confidence 235678999998653
No 311
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.74 E-value=6.3e-19 Score=144.09 Aligned_cols=141 Identities=13% Similarity=0.067 Sum_probs=80.8
Q ss_pred eeccccccccccccccCCC-----CCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCC-CCC
Q psy9640 33 KQYVNMVKPAFSTFIAPSM-----VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG-GEN 106 (199)
Q Consensus 33 ~~y~~~~~~~l~~~vsl~i-----~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~-~~~ 106 (199)
|+|++.. ..+.+ +++++ ++|++++|+|+||||||||+++|+|.+.+..+. +..++... ........ ..+
T Consensus 1 ~~y~~~~-~~~~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~-i~~~g~~i--~~~~q~~~~~~~ 75 (246)
T cd03237 1 YTYPTMK-KTLGE-FTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGD-IEIELDTV--SYKPQYIKADYE 75 (246)
T ss_pred CCCcccc-cccCc-EEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCe-EEECCceE--EEecccccCCCC
Confidence 3555432 35566 55555 589999999999999999999999988765433 32322100 00000000 000
Q ss_pred CchHHHHHHH----------HHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--------------------
Q psy9640 107 CVAIDLIVQH----------IHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-------------------- 156 (199)
Q Consensus 107 ~~~~~~~~~~----------l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-------------------- 156 (199)
....+.+... ..+.+ ..+.++...+..+.+|||||+||++||||++.
T Consensus 76 ~tv~e~l~~~~~~~~~~~~~~~~~l---~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~ 152 (246)
T cd03237 76 GTVRDLLSSITKDFYTHPYFKTEIA---KPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRL 152 (246)
T ss_pred CCHHHHHHHHhhhccccHHHHHHHH---HHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 0001111000 00111 11223333344677899999999999999975
Q ss_pred -hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.....+.++|.++||.+.
T Consensus 153 ~l~~~l~~~~~~~~~tiiivsHd~~~ 178 (246)
T cd03237 153 MASKVIRRFAENNEKTAFVVEHDIIM 178 (246)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 4455555554446788999998663
No 312
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.74 E-value=6.4e-19 Score=146.72 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=48.1
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
..|+++|+++. . +++|++ +||++++|++++|+|+||||||||+++|+|.+.+..
T Consensus 38 ~~l~i~nls~~--~--~~vL~~-vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~ 91 (282)
T cd03291 38 NNLFFSNLCLV--G--APVLKN-INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE 91 (282)
T ss_pred CeEEEEEEEEe--c--ccceee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 45999999985 2 379999 999999999999999999999999999999886653
No 313
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=2.2e-18 Score=131.56 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=95.7
Q ss_pred Ccccccceeeccc-----cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeeccc-chhcccc--
Q psy9640 25 GRDLEGVIKQYVN-----MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMD-SFYRVHA-- 96 (199)
Q Consensus 25 ~i~l~nvs~~y~~-----~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d-~~~~~~~-- 96 (199)
.+.++|++++|.- ..-+++++ +||+++.||-+++-|||||||||++|+|-+-+.++.+.++... +......
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~-vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRN-VSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeec-eeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 4778999998832 23479999 9999999999999999999999999999998887765443221 1000000
Q ss_pred -------------c--cccCCCCCCCc--------------hHHHHHHHHHHHHhcCceeecCCc-eeeecceecCCeee
Q psy9640 97 -------------D--IIVPRGGENCV--------------AIDLIVQHIHSQLQAGVSVDMPQG-YTYEGKRCAVSKIC 146 (199)
Q Consensus 97 -------------~--~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~-~~~~g~~lSgGq~Q 146 (199)
+ .++.|...... ..+.........+ ..+.+|.. +..-|.++|||++|
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll---~rLnlperLW~LaPaTFSGGEqQ 159 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLL---TRLNLPERLWSLAPATFSGGEQQ 159 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHH---HHcCCCHHHhcCCCcccCCchhe
Confidence 0 00011101001 1111111111111 13445543 34467799999999
Q ss_pred eeeEEeccch--------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 147 GVSILRAGET--------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 147 rvaiaRA~~~--------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
||.|||++.. ..-.+.+--+..+...|+|.||++-
T Consensus 160 RVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeev 214 (235)
T COG4778 160 RVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEV 214 (235)
T ss_pred ehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHH
Confidence 9999999865 2222333334568888999999874
No 314
>PRK13409 putative ATPase RIL; Provisional
Probab=99.74 E-value=8.7e-19 Score=159.00 Aligned_cols=145 Identities=13% Similarity=0.090 Sum_probs=90.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCC-
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG- 103 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~- 103 (199)
-++++|+++.|.+. .|++ +++++.+|++++|+|+||||||||+++|+|.+.+..+.+. .+ . ..........
T Consensus 340 ~l~~~~ls~~~~~~---~l~~-~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~-~~-~--~i~y~~Q~~~~ 411 (590)
T PRK13409 340 LVEYPDLTKKLGDF---SLEV-EGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD-PE-L--KISYKPQYIKP 411 (590)
T ss_pred EEEEcceEEEECCE---EEEe-cceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-Ee-e--eEEEecccccC
Confidence 38999999999653 4889 9999999999999999999999999999999876544332 11 0 0000000000
Q ss_pred CCCCchHHHHHH---------HHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------------------
Q psy9640 104 GENCVAIDLIVQ---------HIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------------------ 156 (199)
Q Consensus 104 ~~~~~~~~~~~~---------~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------------------ 156 (199)
..+....+.+.. ...+.+. ...+....+..+.+|||||+|||+||||+..
T Consensus 412 ~~~~tv~e~l~~~~~~~~~~~~~~~~L~---~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~ 488 (590)
T PRK13409 412 DYDGTVEDLLRSITDDLGSSYYKSEIIK---PLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488 (590)
T ss_pred CCCCcHHHHHHHHhhhcChHHHHHHHHH---HCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 000000011100 0101111 1122222344677899999999999999975
Q ss_pred ---hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ---MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ---~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.....+.++|+++||.+
T Consensus 489 ~~~l~~~l~~l~~~~g~tviivsHD~~ 515 (590)
T PRK13409 489 RLAVAKAIRRIAEEREATALVVDHDIY 515 (590)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 445555544444678899999866
No 315
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.74 E-value=1.1e-18 Score=154.76 Aligned_cols=150 Identities=12% Similarity=0.010 Sum_probs=91.0
Q ss_pred Ccccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--ccc-cccc
Q psy9640 25 GRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--VHA-DIIV 100 (199)
Q Consensus 25 ~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--~~~-~~~~ 100 (199)
-++++|+++.|++. .+++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++... ... ....
T Consensus 21 mL~lknL~~~~~~~~~~~IL~n-VSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGe-I~I~G~~~~i~~~~~l~~ 98 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNN-ISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGT-VDIKGSAALIAISSGLNG 98 (549)
T ss_pred eeEEEEEEEecCCCccceEEee-eEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceE-EEECCEeeeEEeccccCC
Confidence 47889999988653 2469999 99999999999999999999999999999988765443 33332110 000 0000
Q ss_pred CCC-C--------CCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------
Q psy9640 101 PRG-G--------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------------- 156 (199)
Q Consensus 101 ~~~-~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------------- 156 (199)
... . ......+...+.+...+. ...+....+..+..|||||+||++||||++.
T Consensus 99 ~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe---~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD 175 (549)
T PRK13545 99 QLTGIENIELKGLMMGLTKEKIKEIIPEIIE---FADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGD 175 (549)
T ss_pred CCcHHHHHHhhhhhcCCCHHHHHHHHHHHHH---HcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence 000 0 000011111111111111 1122222344567899999999999999976
Q ss_pred ------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.. ..+.++|+++||.+
T Consensus 176 ~~sr~~LlelL~el~-~~G~TIIIVSHdl~ 204 (549)
T PRK13545 176 QTFTKKCLDKMNEFK-EQGKTIFFISHSLS 204 (549)
T ss_pred HHHHHHHHHHHHHHH-hCCCEEEEEECCHH
Confidence 333443332 22567899999865
No 316
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.1e-18 Score=143.42 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=52.1
Q ss_pred cccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 22 LARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 22 ~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
...-+.++|++++|++. +++++ +||++.+|++++|+|+||||||||+++|+|.+.+..
T Consensus 7 ~~~~i~~~~~~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~ 64 (257)
T PRK14246 7 AEDVFNISRLYLYINDK--AILKD-ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYD 64 (257)
T ss_pred hhhheeeeeEEEecCCc--eeEec-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 44568999999999765 79999 999999999999999999999999999999887654
No 317
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.74 E-value=7.9e-19 Score=158.57 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=50.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
-++++|++++|++. ++|++ +||++.+|++++|+|+||||||||+++|+|.+.+..+
T Consensus 324 ~l~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G 379 (556)
T PRK11819 324 VIEAENLSKSFGDR--LLIDD-LSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSG 379 (556)
T ss_pred EEEEEeEEEEECCe--eeecc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 48999999999764 79999 9999999999999999999999999999998866543
No 318
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.1e-18 Score=143.85 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=49.6
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
..|+++|++++|++. ++|++ +||++++|++++|+|+||||||||+++|+|...+
T Consensus 15 ~~l~~~~l~~~~~~~--~vl~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 68 (265)
T PRK14252 15 QKSEVNKLNFYYGGY--QALKN-INMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL 68 (265)
T ss_pred ceEEEEEEEEEECCe--eeeee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 458999999999764 79999 9999999999999999999999999999998764
No 319
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.1e-18 Score=139.57 Aligned_cols=142 Identities=14% Similarity=0.126 Sum_probs=85.6
Q ss_pred cceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------------ccc
Q psy9640 30 GVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------------VHA 96 (199)
Q Consensus 30 nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------------~~~ 96 (199)
||+++|++. .+ | +||++++ ++++|+|+||||||||+++|+|.+.+..+.+ ..++... ...
T Consensus 5 ~l~~~~~~~--~~--~-vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 5 DIEKRLPDF--TL--K-IDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTI-VLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred eeeEecCCe--ee--C-ceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEecccccchhhhhhHhhcE
Confidence 899999875 34 9 9999999 9999999999999999999999987654433 2222110 000
Q ss_pred ccccCC-CCCCCch-HHHH------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640 97 DIIVPR-GGENCVA-IDLI------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------ 156 (199)
Q Consensus 97 ~~~~~~-~~~~~~~-~~~~------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------ 156 (199)
...... ....... .+.+ ...+.+.+. ...++...+..+.+|||||+||++||||++.
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 154 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLD---LLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLL 154 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHH---HcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 111111 1110001 1111 001111111 1222222344667899999999999999976
Q ss_pred ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+....-+.+.|.++||.+.
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 194 (214)
T cd03297 155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE 194 (214)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH
Confidence 4444444443335678999998764
No 320
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.74 E-value=9.3e-19 Score=158.00 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=50.5
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
-++++|++++|++. ++|++ +||++++|++++|+||||||||||+++|+|.+.+..+
T Consensus 322 ~l~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G 377 (552)
T TIGR03719 322 VIEAENLSKGFGDK--LLIDD-LSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG 377 (552)
T ss_pred EEEEeeEEEEECCe--eeecc-ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe
Confidence 38899999999764 79999 9999999999999999999999999999998866543
No 321
>PLN03073 ABC transporter F family; Provisional
Probab=99.73 E-value=6.3e-19 Score=162.84 Aligned_cols=57 Identities=16% Similarity=0.063 Sum_probs=50.4
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
-++++||++.|++. ..+|++ +||++.+|++++|+||||||||||+++|+|.+.|..+
T Consensus 508 ~L~~~~ls~~y~~~-~~il~~-vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G 564 (718)
T PLN03073 508 IISFSDASFGYPGG-PLLFKN-LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSG 564 (718)
T ss_pred eEEEEeeEEEeCCC-CeeEec-cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 48899999999643 268999 9999999999999999999999999999998876543
No 322
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.73 E-value=1.1e-18 Score=155.82 Aligned_cols=63 Identities=10% Similarity=0.085 Sum_probs=51.9
Q ss_pred Ccccccceeeccc-cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecc
Q psy9640 25 GRDLEGVIKQYVN-MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSM 88 (199)
Q Consensus 25 ~i~l~nvs~~y~~-~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~ 88 (199)
-++++|+++.|.. ....++++ +||++.+|++++|+|+||||||||+++|+|.+.|+..|.+..
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~-is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~ 320 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDD-VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFI 320 (500)
T ss_pred eEEEeCCccccccccccccccc-ceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEE
Confidence 3899999999842 12368999 999999999999999999999999999999987543344433
No 323
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.73 E-value=2.9e-18 Score=152.99 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=51.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL 85 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~ 85 (199)
-|.++|+++.|+.. ++|++ +++++.+|+.+||+|+||||||||+++|+|.+.+..+.+
T Consensus 3 ~i~~~~ls~~~g~~--~l~~~-~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i 60 (530)
T COG0488 3 MITLENLSLAYGDR--PLLEN-VSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60 (530)
T ss_pred eEEEeeeEEeeCCc--eeecC-CcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE
Confidence 47899999999655 89999 999999999999999999999999999999987654433
No 324
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2e-18 Score=154.37 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=47.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
-++++|+++.|. .++++ +||++++|++++|+||||||||||+++|+|.+.+..
T Consensus 265 ~l~~~~l~~~~~----~~l~~-isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~ 317 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRD-ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG 317 (510)
T ss_pred EEEEeCccccCC----Ccccc-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence 388999998762 48999 999999999999999999999999999999886644
No 325
>KOG0054|consensus
Probab=99.72 E-value=2e-18 Score=165.60 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=90.9
Q ss_pred ccCcccccceeeccc-cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch-hcccc-ccc
Q psy9640 23 ARGRDLEGVIKQYVN-MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF-YRVHA-DII 99 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~-~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~-~~~~~-~~~ 99 (199)
+..++++|.+++|.. ...+.|+| |||++++|+.+||+|+.|||||+|+..|+|.+....+.+...... |..+. .+.
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~d-In~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ 594 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKD-INFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQ 594 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccc-eeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhh
Confidence 345999999999965 34469999 999999999999999999999999999999987655433222221 11111 111
Q ss_pred cCCCC-----CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 100 VPRGG-----ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 100 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
...-. ..+.+.+.-.+.++....+.....+|.|..| +|.+|||||||||+||||...
T Consensus 595 ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~ 660 (1381)
T KOG0054|consen 595 NGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQ 660 (1381)
T ss_pred CCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhc
Confidence 11111 1133333333344333334455567777566 788999999999999999965
No 326
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=3.2e-18 Score=141.02 Aligned_cols=52 Identities=21% Similarity=0.156 Sum_probs=47.6
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+.++++++.|.+. +++++ +||++++|++++|+|+||||||||+++|+|++.+
T Consensus 9 ~~~~~~~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (261)
T PRK14263 9 MDCKLDKIFYGNF--MAVRD-SHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDL 60 (261)
T ss_pred EEEEeEEEEeCCE--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHccccc
Confidence 6788889999654 79999 9999999999999999999999999999999865
No 327
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.71 E-value=6e-18 Score=139.02 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=46.4
Q ss_pred ccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeee
Q psy9640 29 EGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL 85 (199)
Q Consensus 29 ~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~ 85 (199)
.||+++|+.. ..++++ +++ +++|++++|+||||||||||+++|+|++.+..+.+
T Consensus 4 ~~~~~~y~~~-~~~l~~-i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I 57 (255)
T cd03236 4 DEPVHRYGPN-SFKLHR-LPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKF 57 (255)
T ss_pred cCcceeecCc-chhhhc-CCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence 4789999643 268999 995 99999999999999999999999999988765544
No 328
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.71 E-value=4.2e-18 Score=169.49 Aligned_cols=169 Identities=14% Similarity=0.073 Sum_probs=104.1
Q ss_pred cCchhHHhhh-hhcc-cccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 6 DTDADVRLAR-RLKR-DILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 6 ~~~~~~~~~~-~~~~-~~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
|.|+|+...+ ++.. ...+.-++++|++++|++..+.++++ +||++++|+++||+|+||||||||+++|+|.+.+..+
T Consensus 1916 ~eD~DV~~Er~rV~~~~~~~~~L~v~nLsK~Y~~~~~~aL~~-ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG 1994 (2272)
T TIGR01257 1916 DEDDDVAEERQRIISGGNKTDILRLNELTKVYSGTSSPAVDR-LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSG 1994 (2272)
T ss_pred CchhHHHHHHHHHhccCCCCceEEEEEEEEEECCCCceEEEe-eEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence 4566765554 3432 33344699999999997533579999 9999999999999999999999999999999877654
Q ss_pred eeecccchhcc--------ccc-cccCCCCCCCchH-HH--------------HHHHHHHHHhcCceeecCCceeeecce
Q psy9640 84 TLLSMDSFYRV--------HAD-IIVPRGGENCVAI-DL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKR 139 (199)
Q Consensus 84 ~~i~~d~~~~~--------~~~-~~~~~~~~~~~~~-~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~ 139 (199)
.+ ..++.... ..+ .+........... +. ..+.+.+.+. ..++....+....+
T Consensus 1995 ~I-~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe---~lgL~~~~dk~~~~ 2070 (2272)
T TIGR01257 1995 DA-TVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQ---SLGLSLYADRLAGT 2070 (2272)
T ss_pred EE-EECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCHHHhcCChhh
Confidence 33 22221110 001 1111111111010 11 1111111111 12233333446779
Q ss_pred ecCCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 140 CAVSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 140 lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
||||||||++||||++. +.+.+.+.... +.++|.++|+-+
T Consensus 2071 LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~me 2131 (2272)
T TIGR01257 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSME 2131 (2272)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 99999999999999975 44455554333 677899999755
No 329
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.71 E-value=2.5e-18 Score=169.43 Aligned_cols=134 Identities=14% Similarity=0.143 Sum_probs=82.5
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee--------eeecccchhcccc---ccccCCCCCCCc
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV--------TLLSMDSFYRVHA---DIIVPRGGENCV 108 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~--------~~i~~d~~~~~~~---~~~~~~~~~~~~ 108 (199)
+++|+| +||++++|++++|+||||||||||++.|+|.+.+..+ ++++++....... .+.+.. +.
T Consensus 439 ~~~l~~-i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~----~~ 513 (1490)
T TIGR01271 439 TPVLKN-ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGL----SY 513 (1490)
T ss_pred Ccceee-eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhcc----cc
Confidence 358999 9999999999999999999999999999999876543 2333332111000 000110 11
Q ss_pred hHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch---------------------hHHH-HH
Q psy9640 109 AIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET---------------------MEQA-VH 162 (199)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~---------------------~~~~-l~ 162 (199)
+.+...+.++..........+|.+..+ .|..|||||||||+||||+.. +.+. +.
T Consensus 514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~ 593 (1490)
T TIGR01271 514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC 593 (1490)
T ss_pred chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 111111122111111222344555443 578999999999999999975 3332 33
Q ss_pred hhccccceeEEEEEeCCC
Q psy9640 163 DVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 163 ~~~p~~~~~~~~~~~~~~ 180 (199)
+... +.++|.++|+.+
T Consensus 594 ~~~~--~~tvilvtH~~~ 609 (1490)
T TIGR01271 594 KLMS--NKTRILVTSKLE 609 (1490)
T ss_pred HHhc--CCeEEEEeCChH
Confidence 4443 467799999865
No 330
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.71 E-value=4.2e-18 Score=149.55 Aligned_cols=145 Identities=13% Similarity=0.066 Sum_probs=94.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc-------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD------- 97 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~------- 97 (199)
-++++|++++|++- ++|++ |+|++.+||+++++|.||||||||+|.|+|.+.|+.+. +..++......+
T Consensus 8 ll~~~~i~K~FggV--~AL~~-v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~-I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 8 LLELRGISKSFGGV--KALDG-VSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE-ILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred eeeeecceEEcCCc--eeecc-ceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCce-EEECCEEccCCCHHHHHhC
Confidence 58899999999886 89999 99999999999999999999999999999999876543 333322111000
Q ss_pred --------c------c------cCCCC---CCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640 98 --------I------I------VPRGG---ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG 154 (199)
Q Consensus 98 --------~------~------~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~ 154 (199)
+ . ..+.. ..-.+.....+.....+..- ......++...+||.||||-|+||||+
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~l---g~~~~~~~~v~~LsiaqrQ~VeIArAl 160 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL---GLDIDPDTLVGDLSIAQRQMVEIARAL 160 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHc---CCCCChhhhhhhCCHHHHHHHHHHHHH
Confidence 0 0 00000 00112233333332222211 111112444558999999999999999
Q ss_pred ch---------------------hHHHHHhhccccceeEEEEEe
Q psy9640 155 ET---------------------MEQAVHDVCKDIRIGKILIQT 177 (199)
Q Consensus 155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~ 177 (199)
.. +...+ +-+.+-++++|+|+|
T Consensus 161 ~~~arllIlDEPTaaLt~~E~~~Lf~~i-r~Lk~~Gv~ii~ISH 203 (500)
T COG1129 161 SFDARVLILDEPTAALTVKETERLFDLI-RRLKAQGVAIIYISH 203 (500)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHhCCCEEEEEcC
Confidence 65 33333 344467999999998
No 331
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.70 E-value=4.2e-18 Score=137.73 Aligned_cols=133 Identities=11% Similarity=0.078 Sum_probs=79.0
Q ss_pred ccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc----ccc-ccCCCCCCC-chHHHH---
Q psy9640 43 FSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH----ADI-IVPRGGENC-VAIDLI--- 113 (199)
Q Consensus 43 l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~----~~~-~~~~~~~~~-~~~~~~--- 113 (199)
+++ +||++++|++++|+|+||||||||+++|+|.+.+..+ .+..++..... ... ......... ...+.+
T Consensus 1 l~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKG-VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSG-GVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CCc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHH
Confidence 467 8999999999999999999999999999998876543 33333211100 000 000000000 000110
Q ss_pred -------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHH
Q psy9640 114 -------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQ 159 (199)
Q Consensus 114 -------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~ 159 (199)
.+.+.+.+. ...+....+..+.+|||||+||++||||+.. +.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 155 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIA---LVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE 155 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHH---HcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 111111111 1122223344567899999999999999975 455
Q ss_pred HHHhhccccceeEEEEEeCCC
Q psy9640 160 AVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 160 ~l~~~~p~~~~~~~~~~~~~~ 180 (199)
.+.+...+-+.+.|.++||.+
T Consensus 156 ~l~~~~~~~~~tii~~sH~~~ 176 (230)
T TIGR01184 156 ELMQIWEEHRVTVLMVTHDVD 176 (230)
T ss_pred HHHHHHHhcCCEEEEEeCCHH
Confidence 555554444567899999875
No 332
>PLN03211 ABC transporter G-25; Provisional
Probab=99.70 E-value=1.3e-17 Score=153.17 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=48.7
Q ss_pred ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC-eeeeecccc
Q psy9640 27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP-WVTLLSMDS 90 (199)
Q Consensus 27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~-~~~~i~~d~ 90 (199)
..+|++++|++. .+|++ +|+++++|++++|+||||||||||+++|+|.+.+. ..|.+..++
T Consensus 70 ~~~~l~~~~~~~--~iL~~-vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG 131 (659)
T PLN03211 70 KISDETRQIQER--TILNG-VTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN 131 (659)
T ss_pred ccccccccCCCC--eeeeC-CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECC
Confidence 455666777543 79999 99999999999999999999999999999988653 344444443
No 333
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.69 E-value=3.7e-18 Score=137.98 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=80.0
Q ss_pred cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC---eeeeecccchhcc-------ccccccCCC---CCCCc
Q psy9640 42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP---WVTLLSMDSFYRV-------HADIIVPRG---GENCV 108 (199)
Q Consensus 42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~---~~~~i~~d~~~~~-------~~~~~~~~~---~~~~~ 108 (199)
++++ +||++++|++++|+|+||||||||+++|+|.+.+. ..|.+..++.... ......... .....
T Consensus 1 ~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQD-LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred Cccc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 4688 99999999999999999999999999999998762 3444433332110 001111110 00000
Q ss_pred hH-HHH--------------HHHHHHHHhcCceeecC---CceeeecceecCCeeeeeeEEeccch--------------
Q psy9640 109 AI-DLI--------------VQHIHSQLQAGVSVDMP---QGYTYEGKRCAVSKICGVSILRAGET-------------- 156 (199)
Q Consensus 109 ~~-~~~--------------~~~l~~~~~~~~~~~~~---~~~~~~g~~lSgGq~QrvaiaRA~~~-------------- 156 (199)
.. +.+ .+.+.+.+. ...++ ...+..+..|||||+|||+||||++.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~L 156 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALE---AVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL 156 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHH---HcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 10 000 001111111 11222 11234567899999999999999975
Q ss_pred -------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+....-+.++|.++|+.+
T Consensus 157 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 187 (230)
T TIGR02770 157 DVVNQARVLKLLRELRQLFGTGILLITHDLG 187 (230)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 445555554433567899999865
No 334
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=6.3e-19 Score=137.43 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=51.9
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL 85 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~ 85 (199)
-+.++|+.++|... +++++ |||++++||+||+.||||+||||.+.++.|+..++.+.+
T Consensus 4 ~L~a~~l~K~y~kr--~Vv~~-Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i 61 (243)
T COG1137 4 TLVAENLAKSYKKR--KVVND-VSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI 61 (243)
T ss_pred EEEehhhhHhhCCe--eeeee-eeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceE
Confidence 47889999999876 89999 999999999999999999999999999998887765443
No 335
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.69 E-value=9.8e-18 Score=134.22 Aligned_cols=131 Identities=18% Similarity=0.069 Sum_probs=78.2
Q ss_pred cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc-c-ccCC-C-CCC--------Cch
Q psy9640 42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD-I-IVPR-G-GEN--------CVA 109 (199)
Q Consensus 42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~-~-~~~~-~-~~~--------~~~ 109 (199)
+|++ +||++++|++++|+||||||||||+++|+|.+.+..+.+...++....... . ..+. . ..| ...
T Consensus 2 vl~~-vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 2 VLDK-TDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred eeee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 6889 999999999999999999999999999999887665544312221110000 0 0000 0 000 000
Q ss_pred HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHhhcccc
Q psy9640 110 IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHDVCKDI 168 (199)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~ 168 (199)
.......+ . ....++...+.....|||||+||++||||++. +.+.+.+.+.+
T Consensus 81 ~~~~~~~~----~--~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~- 153 (213)
T PRK15177 81 GDEFSHFC----Y--QLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ- 153 (213)
T ss_pred HHHHHHHH----H--HHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC-
Confidence 11111111 0 01223333445667899999999999999975 33334333444
Q ss_pred ceeEEEEEeCCCC
Q psy9640 169 RIGKILIQTNKAT 181 (199)
Q Consensus 169 ~~~~~~~~~~~~~ 181 (199)
-+.|+++|+.+.
T Consensus 154 -~~ii~vsH~~~~ 165 (213)
T PRK15177 154 -KGLIVLTHNPRL 165 (213)
T ss_pred -CcEEEEECCHHH
Confidence 357999998764
No 336
>PLN03073 ABC transporter F family; Provisional
Probab=99.69 E-value=6.1e-18 Score=156.32 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=47.2
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.|+++|++++|++. .+|++ +||++.+|+++||+|+||||||||+++|+|..
T Consensus 177 ~I~i~nls~~y~~~--~ll~~-isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~ 227 (718)
T PLN03073 177 DIHMENFSISVGGR--DLIVD-ASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA 227 (718)
T ss_pred eEEEceEEEEeCCC--EEEEC-CEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 49999999999754 69999 99999999999999999999999999999853
No 337
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.69 E-value=6.5e-18 Score=138.12 Aligned_cols=55 Identities=13% Similarity=0.236 Sum_probs=45.1
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeeccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMD 89 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d 89 (199)
++++||++. .+|++ +||++++|++++|+|+||||||||+++|+|.+. + .|.+..+
T Consensus 1 ~~~~~l~~~------~~l~~-vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~ 55 (248)
T PRK03695 1 MQLNDVAVS------TRLGP-LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFA 55 (248)
T ss_pred Ccccccchh------ceecc-eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEEC
Confidence 357788875 27899 999999999999999999999999999999874 3 3444433
No 338
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.3e-17 Score=148.64 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=47.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
-++++|+++.+ +.+|++ +||++.+|++++|+|+||||||||+++|+|...+..+
T Consensus 250 ~i~~~~l~~~~----~~~l~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 303 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRD-VSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAG 303 (491)
T ss_pred EEEEeCccccc----Ccccce-eeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCcc
Confidence 48999999974 258999 9999999999999999999999999999998876543
No 339
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=5.8e-18 Score=129.08 Aligned_cols=121 Identities=14% Similarity=0.209 Sum_probs=81.2
Q ss_pred ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCCC
Q psy9640 27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGEN 106 (199)
Q Consensus 27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~~ 106 (199)
.++|+++.|++. +++++ +++++++|++++|+|+||||||||+++|+|.+.+.. |.+..++.....
T Consensus 1 ~~~~~~~~~~~~--~~l~~-~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~-G~i~~~~~~~~~----------- 65 (157)
T cd00267 1 EIENLSFRYGGR--TALDN-VSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS-GEILIDGKDIAK----------- 65 (157)
T ss_pred CeEEEEEEeCCe--eeEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc-cEEEECCEEccc-----------
Confidence 367899999765 79999 999999999999999999999999999999876543 323332211100
Q ss_pred CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHhhc
Q psy9640 107 CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHDVC 165 (199)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~ 165 (199)
......... .++-. +|||||+||++||||+.. +.+.+.+..
T Consensus 66 -~~~~~~~~~--------------i~~~~---qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~ 127 (157)
T cd00267 66 -LPLEELRRR--------------IGYVP---QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELA 127 (157)
T ss_pred -CCHHHHHhc--------------eEEEe---eCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 000010000 01001 299999999999999975 334444333
Q ss_pred cccceeEEEEEeCCCC
Q psy9640 166 KDIRIGKILIQTNKAT 181 (199)
Q Consensus 166 p~~~~~~~~~~~~~~~ 181 (199)
.. ..+.+.++|+.+.
T Consensus 128 ~~-~~tii~~sh~~~~ 142 (157)
T cd00267 128 EE-GRTVIIVTHDPEL 142 (157)
T ss_pred HC-CCEEEEEeCCHHH
Confidence 33 4577999998764
No 340
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.67 E-value=2.5e-17 Score=164.08 Aligned_cols=149 Identities=11% Similarity=0.025 Sum_probs=95.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------ccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHA 96 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~ 96 (199)
.++++|+++.|++..+.++++ +|+++.+|++++|+|+||||||||+++|+|++.|..+.+ ..++... ...
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~-lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I-~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDR-LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV-LVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEe-eEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEE-EECCEECcchHHHHhhcE
Confidence 589999999996433579999 999999999999999999999999999999988765443 2222111 000
Q ss_pred cc-ccCCCCCCCch-HH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640 97 DI-IVPRGGENCVA-ID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---- 156 (199)
Q Consensus 97 ~~-~~~~~~~~~~~-~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---- 156 (199)
.. ........... .+ ...+.+.+.+. .+++....+..+.+||||||||++||||++.
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~---~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLE---DTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 11 11111111000 01 11111111111 1233333455677999999999999999976
Q ss_pred -----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.- . +.+.|.++||.+
T Consensus 1083 LLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmd 1121 (2272)
T TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMD 1121 (2272)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHH
Confidence 455555552 2 567799999765
No 341
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.1e-17 Score=127.67 Aligned_cols=121 Identities=15% Similarity=0.105 Sum_probs=80.1
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc-----cc-
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD-----II- 99 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~-----~~- 99 (199)
++.+|++..-... ..|.+ +||++.+|+.+.|.||||||||||+|+|+|++.|..+.+...+.--....+ +.
T Consensus 3 L~a~~L~~~R~e~--~lf~~-L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERGER--TLFSD-LSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLY 79 (209)
T ss_pred chhhhhhhccCcc--eeecc-eeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHH
Confidence 5567777665444 78999 999999999999999999999999999999998876655443221110000 00
Q ss_pred --cCCCC----------------CCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640 100 --VPRGG----------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 100 --~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~ 156 (199)
...+. .+....+.+.+++ .........++|.+ +||.||++||||||-++.
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al-~~vgL~g~~dlp~~------~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEAL-AQVGLAGLEDLPVG------QLSAGQQRRVALARLWLS 147 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHH-HHcCcccccccchh------hcchhHHHHHHHHHHHcC
Confidence 00000 1112234455555 33433445566655 899999999999998864
No 342
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.67 E-value=2.3e-17 Score=128.41 Aligned_cols=121 Identities=14% Similarity=0.113 Sum_probs=73.7
Q ss_pred ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCCCCchHHHHHHHHH
Q psy9640 39 VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIH 118 (199)
Q Consensus 39 ~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 118 (199)
..++|++ +||++++|++++|+||||||||||++++++- .|.+..++..... .+... -.. .+ .+.+
T Consensus 7 ~~~~l~~-isl~i~~G~~~~l~G~nG~GKSTLl~~il~~-----~G~v~~~~~~~~~-----~~~~~-~~~-~q-~~~l- 71 (176)
T cd03238 7 NVHNLQN-LDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA-----SGKARLISFLPKF-----SRNKL-IFI-DQ-LQFL- 71 (176)
T ss_pred eeeeecc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhhc-----CCcEEECCccccc-----ccccE-EEE-hH-HHHH-
Confidence 3578999 9999999999999999999999999988531 1112111110000 00000 000 11 2222
Q ss_pred HHHhcCceeecCC-ceeeecceecCCeeeeeeEEeccch-----------------------hHHHHHhhccccceeEEE
Q psy9640 119 SQLQAGVSVDMPQ-GYTYEGKRCAVSKICGVSILRAGET-----------------------MEQAVHDVCKDIRIGKIL 174 (199)
Q Consensus 119 ~~~~~~~~~~~~~-~~~~~g~~lSgGq~QrvaiaRA~~~-----------------------~~~~l~~~~p~~~~~~~~ 174 (199)
..+ .+.. ..+..+.+|||||+||++||||+.. +.+.+.+... .+.++|.
T Consensus 72 ~~~------~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIi 144 (176)
T cd03238 72 IDV------GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVIL 144 (176)
T ss_pred HHc------CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence 211 1111 1234566899999999999999865 3344444432 3678899
Q ss_pred EEeCCCC
Q psy9640 175 IQTNKAT 181 (199)
Q Consensus 175 ~~~~~~~ 181 (199)
++|+.+.
T Consensus 145 vSH~~~~ 151 (176)
T cd03238 145 IEHNLDV 151 (176)
T ss_pred EeCCHHH
Confidence 9998753
No 343
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.67 E-value=3.4e-17 Score=146.29 Aligned_cols=142 Identities=12% Similarity=0.118 Sum_probs=86.6
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------cc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------VH 95 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~~ 95 (199)
++++|+++ .++++ +||++.+|++++|+||||||||||+++|+|.+.+..+ .+..++... ..
T Consensus 258 l~~~~l~~-------~~l~~-vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G-~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 258 LKVDNLSG-------PGVND-VSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSG-YVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEeCccc-------CCccc-ceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHHHHCC
Confidence 67777764 36899 9999999999999999999999999999998876543 333322100 00
Q ss_pred ccc-ccCC---CCCCCchH-H--------------------HHHHHHHHHHhcCceeecC-CceeeecceecCCeeeeee
Q psy9640 96 ADI-IVPR---GGENCVAI-D--------------------LIVQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVS 149 (199)
Q Consensus 96 ~~~-~~~~---~~~~~~~~-~--------------------~~~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~Qrva 149 (199)
... .... ........ + ...+.+.+.+. ...++ ...+..+.+|||||+|||+
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LSgGekqrv~ 405 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIR---LFNIKTPSMEQAIGLLSGGNQQKVA 405 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHH---hcCCCCCCccCchhhCCHHHHHHHH
Confidence 011 1110 00000000 0 00111111111 12332 2234567799999999999
Q ss_pred EEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 150 ILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 150 iaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
||||++. +.+.+.+.... +.++|.++||.+
T Consensus 406 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~ 456 (501)
T PRK10762 406 IARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMP 456 (501)
T ss_pred HHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence 9999975 55555555333 678899999865
No 344
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.66 E-value=2.5e-17 Score=147.03 Aligned_cols=150 Identities=11% Similarity=0.018 Sum_probs=91.0
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch----hc-cccc
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF----YR-VHAD 97 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~----~~-~~~~ 97 (199)
..-++++|+++.|++. +.++++ +||.+.+|+.|||+||||+|||||+++|+|...+..+.+..-... +- ....
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l~~~-~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~ 396 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLLLKD-LSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDE 396 (530)
T ss_pred CeeEEEeccccccCCC-ceeecC-ceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhh
Confidence 3458999999999664 589999 999999999999999999999999999999887763322211111 00 0000
Q ss_pred cccCCCC-----C-CCc-hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--------------
Q psy9640 98 IIVPRGG-----E-NCV-AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-------------- 156 (199)
Q Consensus 98 ~~~~~~~-----~-~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-------------- 156 (199)
....... . .+. ....+...+...+....... .....||||||-|+.+|+.++.
T Consensus 397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~------~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhL 470 (530)
T COG0488 397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQE------KPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHL 470 (530)
T ss_pred cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHh------CchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccC
Confidence 0000000 0 000 01122222211111111222 2344899999999999999865
Q ss_pred ---hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ---MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ---~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
..+.|-+.+-+-.=++|+|+||..
T Consensus 471 Di~s~~aLe~aL~~f~Gtvl~VSHDr~ 497 (530)
T COG0488 471 DIESLEALEEALLDFEGTVLLVSHDRY 497 (530)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 333333333333337799999976
No 345
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.66 E-value=2.9e-17 Score=146.71 Aligned_cols=51 Identities=14% Similarity=0.140 Sum_probs=43.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
++++|+++. .++++ +||++++|++++|+||||||||||+++|+|.+.+..+
T Consensus 258 l~~~~~~~~------~~l~~-isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G 308 (501)
T PRK11288 258 LRLDGLKGP------GLREP-ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAG 308 (501)
T ss_pred EEEeccccC------Ccccc-eeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCc
Confidence 667777632 58999 9999999999999999999999999999998865543
No 346
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.66 E-value=6.9e-17 Score=137.11 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=106.4
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc--------hhccc
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--------FYRVH 95 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~--------~~~~~ 95 (199)
..++++||.|.|+... .-+.- ||++|++||+|-|+|.|||||||++++|.|++.|..+++...+. -|+..
T Consensus 321 ~~lelrnvrfay~~~~-FhvgP-iNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~L 398 (546)
T COG4615 321 KTLELRNVRFAYQDNA-FHVGP-INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKL 398 (546)
T ss_pred cceeeeeeeeccCccc-ceecc-eeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHH
Confidence 3699999999996542 44567 89999999999999999999999999999999987766543221 12211
Q ss_pred cccc------cCC--CCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------
Q psy9640 96 ADII------VPR--GGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----------- 156 (199)
Q Consensus 96 ~~~~------~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----------- 156 (199)
.+-. ++. +..+..+.+.+...+ +.+.......+..+ ......||.|||.|+|+.-|++.
T Consensus 399 fSavFsDyhLF~~ll~~e~~as~q~i~~~L-qrLel~~ktsl~d~-~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWA 476 (546)
T COG4615 399 FSAVFSDYHLFDQLLGPEGKASPQLIEKWL-QRLELAHKTSLNDG-RFSNLKLSTGQKKRLALLLALLEERDILVLDEWA 476 (546)
T ss_pred HHHHhhhHhhhHhhhCCccCCChHHHHHHH-HHHHHhhhhcccCC-cccccccccchHHHHHHHHHHHhhCCeEEeehhh
Confidence 1111 111 112223344444445 44444444444444 44566899999999999988875
Q ss_pred ----------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ----------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ----------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.-.+.+.+=+.+.|+||..
T Consensus 477 ADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~ 510 (546)
T COG4615 477 ADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH 510 (546)
T ss_pred ccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch
Confidence 667777778888889999999765
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=99.66 E-value=2.9e-17 Score=149.06 Aligned_cols=52 Identities=21% Similarity=0.114 Sum_probs=45.0
Q ss_pred ceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeee
Q psy9640 31 VIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL 85 (199)
Q Consensus 31 vs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~ 85 (199)
++++|... ..+|++ ++ .+++|+++||+||||||||||+++|+|.+.|..+.+
T Consensus 79 ~~~~yg~~-~~~L~~-l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i 130 (590)
T PRK13409 79 PVHRYGVN-GFKLYG-LP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDY 130 (590)
T ss_pred ceEEecCC-ceeEec-CC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccc
Confidence 88999653 268999 99 899999999999999999999999999888765443
No 348
>PTZ00243 ABC transporter; Provisional
Probab=99.66 E-value=2.3e-17 Score=163.02 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=70.2
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee--------eeecccchhccccccccCCC-CCCCchH
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV--------TLLSMDSFYRVHADIIVPRG-GENCVAI 110 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~--------~~i~~d~~~~~~~~~~~~~~-~~~~~~~ 110 (199)
+++|++ +||++++|++++|+|+||||||||++.|+|.+.+..+ ++++++..... .....+. ...+.+.
T Consensus 673 ~~iL~~-isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~--~Tv~enI~~~~~~~~ 749 (1560)
T PTZ00243 673 KVLLRD-VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMN--ATVRGNILFFDEEDA 749 (1560)
T ss_pred ceeEee-eEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCC--CcHHHHHHcCChhhH
Confidence 368999 9999999999999999999999999999999876543 33444322110 0000000 0011111
Q ss_pred HHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 111 DLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
+...+.++..........+|.++++ .|.+|||||||||+||||+..
T Consensus 750 ~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~ 799 (1560)
T PTZ00243 750 ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYA 799 (1560)
T ss_pred HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 2222222111111122334444433 578999999999999999975
No 349
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.65 E-value=4.4e-17 Score=149.61 Aligned_cols=150 Identities=16% Similarity=0.122 Sum_probs=93.5
Q ss_pred Ccccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640 25 GRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------- 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------- 93 (199)
-++++|++++|+.. .+++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKG-ISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT-YRVAGQDVATLDADALA 81 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEcCcCCHHHHH
Confidence 48899999999642 2469999 99999999999999999999999999999998765443 33332211
Q ss_pred ----cccccccCC-CCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEec
Q psy9640 94 ----VHADIIVPR-GGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRA 153 (199)
Q Consensus 94 ----~~~~~~~~~-~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA 153 (199)
......... ....... .+.+ .+.+.+.+. .+.+....+..+.+|||||+||++||||
T Consensus 82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~---~lgl~~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQ---RLGLEDRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HCCChhhhcCCcccCCHHHHHHHHHHHH
Confidence 001111111 1110000 1101 111111111 1233333345677999999999999999
Q ss_pred cch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
++. +.+.+.++.. ...+.|.++|+.+
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~ 205 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQ 205 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHH
Confidence 975 4444444432 2567799999766
No 350
>KOG0060|consensus
Probab=99.65 E-value=3.1e-17 Score=144.36 Aligned_cols=169 Identities=15% Similarity=0.131 Sum_probs=119.2
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe-------------eeeeccc
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW-------------VTLLSMD 89 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~-------------~~~i~~d 89 (199)
+.-+++++|+..=|+....++++ +||+|..|+-+.|+||||||||+|+|.|+|++.... +-+++|.
T Consensus 431 Dn~i~~e~v~l~tPt~g~~lie~-Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQr 509 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLLIEN-LSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509 (659)
T ss_pred cceEEeeeeeecCCCCCceeeee-eeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCC
Confidence 35699999999988755567888 999999999999999999999999999998874321 2223333
Q ss_pred chhcccc---ccccCC-CCCC---CchHHHHHHHHHHHHhcCceeecCCceeee-----cceecCCeeeeeeEEeccch-
Q psy9640 90 SFYRVHA---DIIVPR-GGEN---CVAIDLIVQHIHSQLQAGVSVDMPQGYTYE-----GKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 90 ~~~~~~~---~~~~~~-~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----g~~lSgGq~QrvaiaRA~~~- 156 (199)
.+...-. -+..+. ..+. ..+.+.+.+.+ +.......++...+++.. ...||+||+||++.||-...
T Consensus 510 PYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~L-e~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~k 588 (659)
T KOG0060|consen 510 PYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRIL-ENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHK 588 (659)
T ss_pred CCccccchhheeeccCccccccccCCCHHHHHHHH-HHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcC
Confidence 3221110 001110 0111 12334555555 444444445555555531 34799999999999998865
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPK 193 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~ 193 (199)
++..+++.+..++|++|.|.|-+..|.--.|+++|+-
T Consensus 589 Pk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 589 PKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred CceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 8999999999999999999999988888888888874
No 351
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.65 E-value=1.4e-16 Score=138.19 Aligned_cols=146 Identities=15% Similarity=0.128 Sum_probs=97.9
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcccc-------
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHA------- 96 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~------- 96 (199)
..++++++++.|++. .++++ |||++++|++.||.|+||+|||||+++|.|.+.|+.+.+.. ++......
T Consensus 3 ~~l~~~~itK~f~~~--~And~-V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v-~G~~v~~~sP~dA~~ 78 (501)
T COG3845 3 PALEMRGITKRFPGV--VANDD-VSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRV-DGKEVRIKSPRDAIR 78 (501)
T ss_pred ceEEEeccEEEcCCE--EecCc-eeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEE-CCEEeccCCHHHHHH
Confidence 358899999999965 79999 99999999999999999999999999999999887544332 22111000
Q ss_pred ---cccc------CC--CCCC-----------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640 97 ---DIIV------PR--GGEN-----------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG 154 (199)
Q Consensus 97 ---~~~~------~~--~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~ 154 (199)
.+.+ ++ ..+| ..+.....+.+ +.+.. ...++...+..-.+||-|++|||.|.+|+
T Consensus 79 ~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i-~~l~~--~yGl~vdp~~~V~dLsVG~qQRVEIlKaL 155 (501)
T COG3845 79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARI-KELSE--RYGLPVDPDAKVADLSVGEQQRVEILKAL 155 (501)
T ss_pred cCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHH-HHHHH--HhCCCCCccceeecCCcchhHHHHHHHHH
Confidence 0000 00 0011 11223333334 22222 23444444555678999999999999999
Q ss_pred ch---------------------hHHHHHhhccccceeEEEEEe
Q psy9640 155 ET---------------------MEQAVHDVCKDIRIGKILIQT 177 (199)
Q Consensus 155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~ 177 (199)
.. +...+ +.+++-+.+.|+|+|
T Consensus 156 yr~a~iLILDEPTaVLTP~E~~~lf~~l-~~l~~~G~tIi~ITH 198 (501)
T COG3845 156 YRGARLLILDEPTAVLTPQEADELFEIL-RRLAAEGKTIIFITH 198 (501)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEec
Confidence 76 33333 466777999999998
No 352
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.65 E-value=6.6e-17 Score=144.64 Aligned_cols=154 Identities=12% Similarity=0.039 Sum_probs=102.7
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecc-cc--hhccccc-c
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSM-DS--FYRVHAD-I 98 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~-d~--~~~~~~~-~ 98 (199)
...+.++|++..-+... ..+++ .++++++|+.+-|.|+||||||||+|.|+|+.....+.+..- +. ++..+.. +
T Consensus 390 ~~~i~~~nl~l~~p~~~-~ll~~-l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~ 467 (604)
T COG4178 390 DHGITLENLSLRTPDGQ-TLLSE-LNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYL 467 (604)
T ss_pred cceeEEeeeeEECCCCC-eeecc-ceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCC
Confidence 46799999999987653 78899 999999999999999999999999999999886554443221 21 2221110 1
Q ss_pred c---------cCCCCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-------------
Q psy9640 99 I---------VPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------------- 156 (199)
Q Consensus 99 ~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------------- 156 (199)
+ .+.... ....+++.+.+.++........+.. .+.=...||+||+||+|+||.++.
T Consensus 468 p~GtLre~l~YP~~~~-~~~d~~l~~vL~~vgL~~L~~rl~~-~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA 545 (604)
T COG4178 468 PQGTLREALCYPNAAP-DFSDAELVAVLHKVGLGDLAERLDE-EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA 545 (604)
T ss_pred CCccHHHHHhCCCCCC-CCChHHHHHHHHHcCcHHHHHHHhc-cCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc
Confidence 1 111111 2445666666644332211111111 011123799999999999999986
Q ss_pred --------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 --------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 --------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
|.+.+.+-+|++.| |.|.|-+...
T Consensus 546 LDe~~e~~l~q~l~~~lp~~tv--ISV~Hr~tl~ 577 (604)
T COG4178 546 LDEETEDRLYQLLKEELPDATV--ISVGHRPTLW 577 (604)
T ss_pred cChHHHHHHHHHHHhhCCCCEE--EEeccchhhH
Confidence 77788888888666 9999866654
No 353
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=9.1e-17 Score=131.06 Aligned_cols=124 Identities=15% Similarity=0.023 Sum_probs=75.0
Q ss_pred ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc-------------c-----------ccccCC
Q psy9640 47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH-------------A-----------DIIVPR 102 (199)
Q Consensus 47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~-------------~-----------~~~~~~ 102 (199)
++|+.+..-+.+|-|+||||||||+|+|+|+..|+.+. +..++.-... . ++....
T Consensus 17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~-I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGR-IELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EeccCCCCceEEEecCCCCChhhHHHHHhccCCccccE-EEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 68899887899999999999999999999999875432 2222211000 0 000000
Q ss_pred -CCCC--CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hH
Q psy9640 103 -GGEN--CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------ME 158 (199)
Q Consensus 103 -~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~ 158 (199)
..+. ......+.+.+ ..+ ...+-++..|.+|||||+|||||+||++. +.
T Consensus 96 NL~YG~~~~~~~~fd~iv-~lL------GI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eil 168 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLV-ALL------GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL 168 (352)
T ss_pred chhhhhcccchHhHHHHH-HHh------CcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHH
Confidence 0011 11111222222 111 22233344567899999999999999987 44
Q ss_pred HHHHhhccccceeEEEEEeC
Q psy9640 159 QAVHDVCKDIRIGKILIQTN 178 (199)
Q Consensus 159 ~~l~~~~p~~~~~~~~~~~~ 178 (199)
+-+-++..+..|-.+.|+|.
T Consensus 169 pylERL~~e~~IPIlYVSHS 188 (352)
T COG4148 169 PYLERLRDEINIPILYVSHS 188 (352)
T ss_pred HHHHHHHHhcCCCEEEEecC
Confidence 44555666777777888874
No 354
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.65 E-value=7.4e-17 Score=144.40 Aligned_cols=143 Identities=10% Similarity=0.084 Sum_probs=86.7
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------cc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------VH 95 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~~ 95 (199)
++++|+++ .+|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++... ..
T Consensus 269 l~~~~l~~-------~~l~~-isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 269 LTVEDLTG-------EGFRN-ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGR-IMLNGKEINALSTAQRLARG 339 (510)
T ss_pred EEEeCCCC-------CCccc-eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcE-EEECCEECCCCCHHHHHhCC
Confidence 77788873 25899 99999999999999999999999999999988665433 33222100 00
Q ss_pred cc-cccCC---CCCCCch-HHHH-----------------HHHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEEe
Q psy9640 96 AD-IIVPR---GGENCVA-IDLI-----------------VQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSILR 152 (199)
Q Consensus 96 ~~-~~~~~---~~~~~~~-~~~~-----------------~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~QrvaiaR 152 (199)
.. +.... ....... .+.+ .+.+...+. ...++ ...+..+.+|||||+|||+|||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LSgG~kqrl~la~ 416 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRR---ALNIKFNHAEQAARTLSGGNQQKVLIAK 416 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHH---HcCCCCCCccCccccCCcHHHHHHHHHH
Confidence 00 00000 0000000 0100 011111111 12332 2334567799999999999999
Q ss_pred ccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
|++. +.+.+.++... +.++|+++||.+.
T Consensus 417 al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tiIivsHd~~~ 465 (510)
T PRK15439 417 CLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEE 465 (510)
T ss_pred HHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CCEEEEECCCHHH
Confidence 9975 45555555433 6778999998763
No 355
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.62 E-value=2.2e-16 Score=127.15 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
|++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 35 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKG 35 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 57889999999999999999999999998866543
No 356
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.62 E-value=2.9e-16 Score=126.78 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=29.6
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHH
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVA 71 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl 71 (199)
.+++++ +||++++|++++|+|+||||||||+
T Consensus 8 ~~~l~~-vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 8 EHNLKN-VDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hhcccc-ceeecCCCcEEEEEcCCCCCHHHHH
Confidence 479999 9999999999999999999999996
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.61 E-value=5.4e-16 Score=152.18 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=52.0
Q ss_pred cccccceeecc--ccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccc
Q psy9640 26 RDLEGVIKQYV--NMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDS 90 (199)
Q Consensus 26 i~l~nvs~~y~--~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~ 90 (199)
++++||+++|+ ...+.+|++ +|+.+++|++++|+||||||||||+++|+|...+ +..|.+..++
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~-vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G 827 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNN-VDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNG 827 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeC-CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECC
Confidence 68999999985 233579999 9999999999999999999999999999998753 3334444443
No 358
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.60 E-value=6.7e-16 Score=141.11 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=38.2
Q ss_pred ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 39 VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 39 ~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.+++|+| +|+++++|++++|+||||||||||++.|+|...+
T Consensus 37 ~~~iL~~-vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~ 77 (617)
T TIGR00955 37 RKHLLKN-VSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPK 77 (617)
T ss_pred ccccccC-CEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3579999 9999999999999999999999999999998765
No 359
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=5.1e-16 Score=124.54 Aligned_cols=135 Identities=16% Similarity=0.131 Sum_probs=83.5
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-cc--cccccC-CCCCC---------
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-VH--ADIIVP-RGGEN--------- 106 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-~~--~~~~~~-~~~~~--------- 106 (199)
.++|+| |||++.+|+.+||+|+||||||||+|+|+|.+.|+.+.+........ -. .++... .+.+|
T Consensus 40 ~~aL~d-isf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 40 FWALKD-ISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred EEEecC-ceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 479999 99999999999999999999999999999999887655443322110 00 001000 01111
Q ss_pred --CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------------hHHHHHhhcc-
Q psy9640 107 --CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----------------MEQAVHDVCK- 166 (199)
Q Consensus 107 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----------------~~~~l~~~~p- 166 (199)
....+...+.+.+....+...+.|.. ..|-||+-|++.+-|... +.+-|.+.+-
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~Pvk------tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e 192 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVK------TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNE 192 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchh------hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHH
Confidence 12223333333233333445566654 679999999887766543 4444443332
Q ss_pred --ccceeEEEEEeCCCC
Q psy9640 167 --DIRIGKILIQTNKAT 181 (199)
Q Consensus 167 --~~~~~~~~~~~~~~~ 181 (199)
+-..+.|+|+||.+.
T Consensus 193 ~~~~~~tiv~VSHd~~~ 209 (249)
T COG1134 193 LVEKNKTIVLVSHDLGA 209 (249)
T ss_pred HHHcCCEEEEEECCHHH
Confidence 224677999998763
No 360
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.60 E-value=2.5e-17 Score=122.35 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=36.6
Q ss_pred ccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640 43 FSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84 (199)
Q Consensus 43 l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~ 84 (199)
|++ +++++++|++++|+|+||||||||+++|+|.+.+..+.
T Consensus 1 L~~-v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~ 41 (137)
T PF00005_consen 1 LKN-VSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGS 41 (137)
T ss_dssp EEE-EEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEE
T ss_pred CCc-eEEEEcCCCEEEEEccCCCccccceeeecccccccccc
Confidence 578 99999999999999999999999999999988765443
No 361
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.57 E-value=6.4e-16 Score=125.71 Aligned_cols=137 Identities=11% Similarity=0.089 Sum_probs=87.6
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeee--cccchh-----ccccccccC-CC---CCCC-
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLL--SMDSFY-----RVHADIIVP-RG---GENC- 107 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i--~~d~~~-----~~~~~~~~~-~~---~~~~- 107 (199)
.++++| +||+|++|++++++|+|||||||++|+|.|.+-|..+.+- ..+.+. .......+. +. +..+
T Consensus 37 ~~AVqd-isf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQD-ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhhe-eeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 468999 9999999999999999999999999999999877643221 112221 111111110 00 0111
Q ss_pred ------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-------------------
Q psy9640 108 ------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------------------- 156 (199)
Q Consensus 108 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------------------- 156 (199)
...+.+.+.+ ..+ -.++++...++...+.||-|||.|+-||.|+++
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~-~~l--~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq 192 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERL-DFL--TEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHH-HHH--HHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHH
Confidence 1112222222 111 112333333344556899999999999999986
Q ss_pred --hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 --MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 --~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+-++......+.++++.+|+=.
T Consensus 193 ~~ir~Flke~n~~~~aTVllTTH~~~ 218 (325)
T COG4586 193 ANIREFLKEYNEERQATVLLTTHIFD 218 (325)
T ss_pred HHHHHHHHHHHHhhCceEEEEecchh
Confidence 667777888888999999999544
No 362
>PLN03140 ABC transporter G family member; Provisional
Probab=99.57 E-value=1e-15 Score=150.27 Aligned_cols=54 Identities=13% Similarity=0.077 Sum_probs=46.7
Q ss_pred Ccccccceeeccc-----------cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 25 GRDLEGVIKQYVN-----------MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 25 ~i~l~nvs~~y~~-----------~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.+.++||++..+. ..+.+|+| +|+.+++|++++|+||||||||||+++|+|...
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~-vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~ 931 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLRE-VTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 931 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeC-cEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3788999988742 12369999 999999999999999999999999999999864
No 363
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.56 E-value=1e-15 Score=120.80 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=47.8
Q ss_pred cccccceeeccc---cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDLEGVIKQYVN---MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l~nvs~~y~~---~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
+.+.|..+.|.. ..+++|++ ++++|.+|++|.|+|.||||||||++.|+|-+.+..+
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~-~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G 61 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNG-LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61 (263)
T ss_pred cccccceeeecCCChhHHHHHhc-CceeecCCceEEEEcCCCccHHHHHHHhhCccccCCc
Confidence 456777776632 34689999 9999999999999999999999999999998876543
No 364
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3e-15 Score=119.11 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=47.2
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
-++++|++.+-.+. +.+|++ +|+++++|++.+|+||||||||||++.|+|.-.
T Consensus 3 ~L~I~dLhv~v~~~-keILkg-vnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKG-VNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcC-cceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 37889999988653 489999 999999999999999999999999999998653
No 365
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.51 E-value=1.1e-14 Score=143.16 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=41.0
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC---CCeeeeecccc
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN---VPWVTLLSMDS 90 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~---~~~~~~i~~d~ 90 (199)
+++|+| +|+.+++|++++|+||||||||||+++|+|... .+..|.+..++
T Consensus 74 ~~iL~~-vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G 126 (1394)
T TIGR00956 74 FDILKP-MDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDG 126 (1394)
T ss_pred ceeeeC-CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECC
Confidence 469999 999999999999999999999999999999863 23344444443
No 366
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.50 E-value=1.3e-14 Score=116.48 Aligned_cols=125 Identities=17% Similarity=0.129 Sum_probs=82.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh------cccccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY------RVHADI 98 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~------~~~~~~ 98 (199)
.+++++|+++|... .+++| +||.+++|++.|++|+|||||||++|+|+|++.+..+. +..++-. .....+
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~-isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~-I~~~g~~~~~~~~~rIGyL 77 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDN-ISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGE-ITWNGGPLSQEIKNRIGYL 77 (300)
T ss_pred ceEEecchhccCce--eeecc-eeeeecCCeEEEeecCCCCCccchHHHHhccCCccCce-EEEcCcchhhhhhhhcccC
Confidence 37899999999876 89999 99999999999999999999999999999999876543 3333211 111112
Q ss_pred ccCCCCCCCc---------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640 99 IVPRGGENCV---------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 99 ~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~ 156 (199)
+-.|+.+... ...++...+..++.. .+..........+||-|++|+|-+.-|+++
T Consensus 78 PEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer---~~i~~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLER---LEIVGKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred hhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHh---ccccccccchHHHhhhhhhHHHHHHHHHhc
Confidence 3334433211 112223333233322 222222222456899999999999888876
No 367
>PLN03140 ABC transporter G family member; Provisional
Probab=99.49 E-value=6.3e-14 Score=137.91 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=38.2
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+.+|+| +|+.+++|++++|+||||||||||+++|+|.+.+.
T Consensus 178 ~~IL~~-vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~ 218 (1470)
T PLN03140 178 LTILKD-ASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPS 218 (1470)
T ss_pred ceeccC-CeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 468999 99999999999999999999999999999998654
No 368
>KOG0064|consensus
Probab=99.49 E-value=1.3e-14 Score=126.95 Aligned_cols=157 Identities=13% Similarity=0.057 Sum_probs=99.7
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC----------eeeeecccchh
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP----------WVTLLSMDSFY 92 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~----------~~~~i~~d~~~ 92 (199)
..+|.++||-..-|+.. -++.. ++|.+++|..+.|.||||||||+|.|.|.|++... .+-++++..+.
T Consensus 479 ~~gI~lenIpvItP~~~-vvv~~-Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYm 556 (728)
T KOG0064|consen 479 FNGIILENIPVITPAGD-VLVPK-LTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYM 556 (728)
T ss_pred ccceEEecCceeccCcc-eeecc-eeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCcc
Confidence 34688899888777653 36677 99999999999999999999999999998876431 22333333322
Q ss_pred cccc--c-c-------ccCCCCCCCchHHHHHHHHHHHHhcCceeecCCceee---ecceecCCeeeeeeEEeccch---
Q psy9640 93 RVHA--D-I-------IVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY---EGKRCAVSKICGVSILRAGET--- 156 (199)
Q Consensus 93 ~~~~--~-~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~g~~lSgGq~QrvaiaRA~~~--- 156 (199)
..-. + . .+.+....+.+...+.+.+ .....++...+++. =-.-||||++||+++||-..+
T Consensus 557 s~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v----~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPk 632 (728)
T KOG0064|consen 557 SGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIV----HLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPK 632 (728)
T ss_pred CcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHh----hHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcc
Confidence 1000 0 0 0111111122222222221 11122222223332 122699999999999998754
Q ss_pred --------------hHHHHHhhccccceeEEEEEeCCCCCCch
Q psy9640 157 --------------MEQAVHDVCKDIRIGKILIQTNKATDEPE 185 (199)
Q Consensus 157 --------------~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 185 (199)
+++-+.++..+++|+++.|+|-+-.|--.
T Consensus 633 yalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h 675 (728)
T KOG0064|consen 633 YALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYH 675 (728)
T ss_pred hhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHHH
Confidence 88888899999999999999987766433
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.49 E-value=1.4e-14 Score=114.71 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=31.5
Q ss_pred cccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 44 STFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 44 ~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
++ +++++.+| +++|+||||||||||++.|.+++++
T Consensus 14 ~~-~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~ 48 (197)
T cd03278 14 DK-TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGE 48 (197)
T ss_pred CC-eeeecCCC-cEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45 78999999 9999999999999999999988754
No 370
>KOG0927|consensus
Probab=99.48 E-value=2.7e-14 Score=125.17 Aligned_cols=146 Identities=12% Similarity=0.092 Sum_probs=91.5
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc----hhcccccccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS----FYRVHADIIV 100 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~----~~~~~~~~~~ 100 (199)
-+.+.||+|.|.+.. .++++ ++|.+..++.++++||||||||||++++.+.+.|..+.+.+-.- .|........
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~-l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~l 466 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKK-LNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQL 466 (614)
T ss_pred eEEEeccccCCCCcc-hhhhh-hhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhc
Confidence 488999999997663 78999 99999999999999999999999999999988876543322110 0110000000
Q ss_pred CC--C--------CCCCchHHHHHHHHHHHHh-cCceeecCCceeeecceecCCeeeeeeEEeccch-------------
Q psy9640 101 PR--G--------GENCVAIDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------------- 156 (199)
Q Consensus 101 ~~--~--------~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------------- 156 (199)
.- . ..+....+.+...+ ..+. .+.....|. .+||+|||.||..||++..
T Consensus 467 dl~~s~le~~~~~~~~~~~~e~~r~il-grfgLtgd~q~~p~------~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnh 539 (614)
T KOG0927|consen 467 DLDKSSLEFMMPKFPDEKELEEMRSIL-GRFGLTGDAQVVPM------SQLSDGQRRRVLFARLAVKQPHLLLLDEPTNH 539 (614)
T ss_pred CcchhHHHHHHHhccccchHHHHHHHH-HHhCCCccccccch------hhcccccchhHHHHHHHhcCCcEEEecCCCcC
Confidence 00 0 00012222333333 2221 223333333 3899999999999999865
Q ss_pred ----hHHHHHhhccccceeEEEEEeCC
Q psy9640 157 ----MEQAVHDVCKDIRIGKILIQTNK 179 (199)
Q Consensus 157 ----~~~~l~~~~p~~~~~~~~~~~~~ 179 (199)
-.+.|++.+-+-.=|+|++.||=
T Consensus 540 LDi~tid~laeaiNe~~Ggvv~vSHDf 566 (614)
T KOG0927|consen 540 LDIETIDALAEAINEFPGGVVLVSHDF 566 (614)
T ss_pred CCchhHHHHHHHHhccCCceeeeechh
Confidence 33445554444444778888864
No 371
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.48 E-value=1.6e-14 Score=122.56 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=67.3
Q ss_pred EecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------cccccccCC-CCCCCch-H--------------HHHHH
Q psy9640 59 ICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADIIVPR-GGENCVA-I--------------DLIVQ 115 (199)
Q Consensus 59 IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~~~~~-~~~~~~~-~--------------~~~~~ 115 (199)
|+||||||||||+++|+|++.+..+. +..++... ....+.... ....... . ....+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~-I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGS-IMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 68999999999999999988765443 33322110 001111111 0000000 0 01111
Q ss_pred HHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEE
Q psy9640 116 HIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKIL 174 (199)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~ 174 (199)
.+.+.+. ...+....+..+.+|||||+|||+||||+.. +.+.+.+.....+.++|.
T Consensus 80 ~~~~~l~---~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii 156 (325)
T TIGR01187 80 RVLEALR---LVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156 (325)
T ss_pred HHHHHHH---HcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 1111111 1233333345677999999999999999975 555566665555678899
Q ss_pred EEeCCC
Q psy9640 175 IQTNKA 180 (199)
Q Consensus 175 ~~~~~~ 180 (199)
++||.+
T Consensus 157 vTHd~~ 162 (325)
T TIGR01187 157 VTHDQE 162 (325)
T ss_pred EeCCHH
Confidence 999875
No 372
>KOG0062|consensus
Probab=99.44 E-value=3.2e-14 Score=124.07 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=44.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
+|.+++.+..|.+. ..|++ -++++..|..+|++|+||+|||||+|.|+.
T Consensus 80 Di~~~~fdLa~G~k--~LL~~-a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGK--ILLNK-ANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ceeeeeeeeeecch--hhhcC-CceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 57777778888765 78899 999999999999999999999999999987
No 373
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.41 E-value=1.8e-14 Score=112.27 Aligned_cols=62 Identities=19% Similarity=0.104 Sum_probs=55.4
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeeccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMD 89 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d 89 (199)
-+.++||+++|++. .++++ +||++.+|+.-+|+||||+||||++-.|.|.-.|..+.++..+
T Consensus 5 iL~~~~vsVsF~GF--~Aln~-ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g 66 (249)
T COG4674 5 ILYLDGVSVSFGGF--KALND-LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG 66 (249)
T ss_pred eEEEeceEEEEcce--eeeee-eEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcC
Confidence 47899999999988 79999 9999999999999999999999999999998887766655544
No 374
>KOG2355|consensus
Probab=99.41 E-value=4.6e-13 Score=105.39 Aligned_cols=175 Identities=14% Similarity=0.122 Sum_probs=108.1
Q ss_pred cccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccchhcc---
Q psy9640 20 DILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRV--- 94 (199)
Q Consensus 20 ~~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~~~--- 94 (199)
.+.+..|++.++.|.|+... |++-| +|++++.|....++|.||||||||+++|+|-.-. ..+.+...+.|.-.
T Consensus 8 ~~~~~aievsgl~f~y~~~d-P~~~D-fnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~ 85 (291)
T KOG2355|consen 8 AVSDFAIEVSGLQFKYKVSD-PIFFD-FNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE 85 (291)
T ss_pred hcccceEEEeccEEecccCC-ceEEE-EeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc
Confidence 34455699999999998764 89999 8999999999999999999999999999885532 22333333333210
Q ss_pred -ccccccC-CCC--------CCCchHHHHHHHHHHHH-hc-----Cceee-cCCceeeecceecCCeeeeeeEEeccch-
Q psy9640 95 -HADIIVP-RGG--------ENCVAIDLIVQHIHSQL-QA-----GVSVD-MPQGYTYEGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 95 -~~~~~~~-~~~--------~~~~~~~~~~~~l~~~~-~~-----~~~~~-~~~~~~~~g~~lSgGq~QrvaiaRA~~~- 156 (199)
..++... ..+ +-+...+.-..++..-. .. ...+. +...+.-.-+.+|.|||+||.|+..++.
T Consensus 86 ~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 86 SSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred ccCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccc
Confidence 0000000 000 00100011111110000 00 00011 1111122445799999999999988865
Q ss_pred --------------------hHHHHHhhccccceeEEEEEe---CCCCCCchhhhhcCCCCcc
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQT---NKATDEPELYYLRLPKDIK 196 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~ 196 (199)
+.+-++.-+...+-+.|.+|| .=++|+-.+||.+--+..+
T Consensus 166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred eeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 556667777888888899999 5578999999987655544
No 375
>KOG0927|consensus
Probab=99.40 E-value=6.4e-14 Score=122.86 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=51.2
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
...+.++|+++.|++. ..++| +.|++.+|+.+||+|+|||||||++++|.+...|.
T Consensus 73 s~dvk~~sls~s~~g~--~l~kd-~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~ 128 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGV--ELIKD-VTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI 128 (614)
T ss_pred cccceeeeeeeccCCc--eeeee-eeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC
Confidence 3479999999999887 88999 99999999999999999999999999999987653
No 376
>KOG0061|consensus
Probab=99.39 E-value=4.1e-13 Score=122.51 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=52.5
Q ss_pred Ccccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccc
Q psy9640 25 GRDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDS 90 (199)
Q Consensus 25 ~i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~ 90 (199)
.+.++|++....+. .+.+|++ |+..+++|++.||+||||||||||++.|+|.... ...|.+-.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~-vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG 94 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKG-VSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG 94 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeC-cEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC
Confidence 57778888877544 4789999 9999999999999999999999999999998864 2344444443
No 377
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.34 E-value=4.8e-13 Score=110.20 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=31.3
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~ 75 (199)
.-|++ ++++++.|.+++|+|.||||||||++.+.
T Consensus 9 ~nl~~-v~~~ip~g~~~~vtGvSGsGKStL~~~~l 42 (261)
T cd03271 9 NNLKN-IDVDIPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred hcCCC-ceeeccCCcEEEEECCCCCchHHHHHHHH
Confidence 56899 99999999999999999999999998763
No 378
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.34 E-value=2.5e-12 Score=101.25 Aligned_cols=73 Identities=40% Similarity=0.581 Sum_probs=64.9
Q ss_pred ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY 198 (199)
Q Consensus 125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 198 (199)
..++.|.+ .+.+.++.|-..--|.|.||++.|.+++++++|.++||||+++||++|.+|++||.|+|++++.+
T Consensus 53 ~~ieTP~~-~~~~~~~~~~~i~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~ 125 (210)
T COG0035 53 VEIETPLG-PTEGVQIAGKKIVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDER 125 (210)
T ss_pred EEEECCCc-ceeeeeecCCcEEEEEEeeccccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCC
Confidence 45677777 66777887666777999999999999999999999999999999999999999999999987754
No 379
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.33 E-value=3.3e-13 Score=107.93 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=36.3
Q ss_pred CcccccceeeccccccccccccccCCCC-CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMV-EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~-~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.|+++|.. +|.+. .+ ++|... +|++++|+|+||||||||++.|...+
T Consensus 5 ~i~l~nf~-~y~~~-----~~-i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l 52 (213)
T cd03279 5 KLELKNFG-PFREE-----QV-IDFTGLDNNGLFLICGPTGAGKSTILDAITYAL 52 (213)
T ss_pred EEEEECCc-CcCCc-----eE-EeCCCCCccCEEEEECCCCCCHHHHHHHheeeE
Confidence 47788887 66443 34 666643 58999999999999999999998544
No 380
>KOG0066|consensus
Probab=99.33 E-value=1e-12 Score=113.45 Aligned_cols=148 Identities=16% Similarity=0.116 Sum_probs=92.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcccccc---ccC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADI---IVP 101 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~---~~~ 101 (199)
-+-+.+|+|.|++. ++.+.+ ++|.|.--+.|||+||||.|||||+++|.|.+.|..+..--.........+. ...
T Consensus 586 vLGlH~VtFgy~gq-kpLFkk-ldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L 663 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ-KPLFKK-LDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEAL 663 (807)
T ss_pred eeecccccccCCCC-Cchhhc-ccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhh
Confidence 37789999999887 588999 9999999999999999999999999999999887543210000000000000 000
Q ss_pred CCCCCC---------chHHHHHHHHHHHHhcCceeecCCceee-ecceecCCeeeeeeEEeccch---------------
Q psy9640 102 RGGENC---------VAIDLIVQHIHSQLQAGVSVDMPQGYTY-EGKRCAVSKICGVSILRAGET--------------- 156 (199)
Q Consensus 102 ~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~~lSgGq~QrvaiaRA~~~--------------- 156 (199)
+....+ ...+.....+ -.+ .+..-..| .-..|||||+-||++|--.+.
T Consensus 664 ~~Eetp~EyLqr~FNlpyq~ARK~L-G~f------GL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLD 736 (807)
T KOG0066|consen 664 NGEETPVEYLQRKFNLPYQEARKQL-GTF------GLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD 736 (807)
T ss_pred ccccCHHHHHHHhcCCChHHHHHHh-hhh------hhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcc
Confidence 000000 0111111122 111 01000011 345799999999999876543
Q ss_pred --hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
..+.|...+-+-.=|+|.|+||...
T Consensus 737 IESIDALaEAIney~GgVi~VsHDeRL 763 (807)
T KOG0066|consen 737 IESIDALAEAINEYNGGVIMVSHDERL 763 (807)
T ss_pred hhhHHHHHHHHHhccCcEEEEecccce
Confidence 5667777777777788999999875
No 381
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.33 E-value=6.8e-13 Score=107.81 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=26.6
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.++.+ ++ |++++|+||||||||||+++|.+.+
T Consensus 16 ~~~~~-~~-----~~~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 16 TVIEP-FS-----PKHNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred ccccc-CC-----CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45555 44 7899999999999999999998654
No 382
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.32 E-value=9.7e-13 Score=113.74 Aligned_cols=148 Identities=13% Similarity=0.093 Sum_probs=87.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGG 104 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~ 104 (199)
.++..++++.|++..-.+ -.=++..||+++++||||-||||++++|+|.+.|..+......-.|+.+.- ...
T Consensus 342 lv~y~~~~k~~g~F~L~V----~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI----~~~ 413 (591)
T COG1245 342 LVEYPDLKKTYGDFKLEV----EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYI----SPD 413 (591)
T ss_pred eeecchheeecCceEEEe----cCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceee----cCC
Confidence 455555666665431111 122567889999999999999999999999999876642111112222110 001
Q ss_pred CCCchHHHHHHHHHHHHhc-------CceeecCCceeeecceecCCeeeeeeEEeccch---------------------
Q psy9640 105 ENCVAIDLIVQHIHSQLQA-------GVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------------------- 156 (199)
Q Consensus 105 ~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------------------- 156 (199)
.+....+.+.......+.. -..+.+..-++..-..||||+.||||||-|+..
T Consensus 414 ~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~ 493 (591)
T COG1245 414 YDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRII 493 (591)
T ss_pred CCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHH
Confidence 1111112222222111111 012222222344556899999999999999864
Q ss_pred hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
.-..+.+.+....-+.+.|-||=.
T Consensus 494 vakvIRR~~e~~~kta~vVdHDi~ 517 (591)
T COG1245 494 VAKVIRRFIENNEKTALVVDHDIY 517 (591)
T ss_pred HHHHHHHHHhhcCceEEEEeccee
Confidence 445667888888888999998754
No 383
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.32 E-value=5.2e-13 Score=114.39 Aligned_cols=150 Identities=13% Similarity=0.165 Sum_probs=87.8
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC-------Ceeeeecc--cchhccccccccCCCCCCCchH
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV-------PWVTLLSM--DSFYRVHADIIVPRGGENCVAI 110 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~-------~~~~~i~~--d~~~~~~~~~~~~~~~~~~~~~ 110 (199)
..+++| +||++++|++++|+|+|||||||++++|+|.... ++.|.+.. +.. ....+...+....-
T Consensus 396 ryvlr~-vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----~a~iPge~Ep~f~~ 469 (593)
T COG2401 396 RYVLRN-LNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----SALIPGEYEPEFGE 469 (593)
T ss_pred eeeeec-eeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----hhccCcccccccCc
Confidence 478999 9999999999999999999999999999986522 12222111 110 00001100000111
Q ss_pred HHHHHHHHHHHhc-------CceeecCC--ceeeecceecCCeeeeeeEEeccch---------------------hHHH
Q psy9640 111 DLIVQHIHSQLQA-------GVSVDMPQ--GYTYEGKRCAVSKICGVSILRAGET---------------------MEQA 160 (199)
Q Consensus 111 ~~~~~~l~~~~~~-------~~~~~~~~--~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~ 160 (199)
.-+++++...... -....+.. .+-....+||.||+-|+.||+++.. .-.-
T Consensus 470 ~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArk 549 (593)
T COG2401 470 VTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK 549 (593)
T ss_pred hhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHH
Confidence 1222222111100 00011111 1222566899999999999998853 3344
Q ss_pred HHhhccccceeEEEEEeCCCCC-------CchhhhhcCCCCc
Q psy9640 161 VHDVCKDIRIGKILIQTNKATD-------EPELYYLRLPKDI 195 (199)
Q Consensus 161 l~~~~p~~~~~~~~~~~~~~~~-------~~~~~~~~~p~~~ 195 (199)
+..+..+++++.+++||.++-. .+..=|.+.|.+.
T Consensus 550 iselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~~e 591 (593)
T COG2401 550 ISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVNE 591 (593)
T ss_pred HHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccccC
Confidence 5566678899999999988732 3344566666543
No 384
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.30 E-value=2.7e-13 Score=108.55 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=36.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
+++++|.. +|.+. .++++ +++ ++++|+|||||||||++++|.-.++
T Consensus 5 ~l~l~nfk-~~~~~--~~l~~-~~~-----~i~~ivGpNGaGKSTll~~i~~~~G 50 (212)
T cd03274 5 KLVLENFK-SYAGE--QVIGP-FHK-----SFSAIVGPNGSGKSNVIDSMLFVFG 50 (212)
T ss_pred EEEEECcc-cCCCC--eeecc-CCC-----CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45666665 66544 67888 777 7999999999999999999985544
No 385
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.26 E-value=2.1e-11 Score=93.96 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=37.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
++++||+..- -|-. +|.++..|+++-++||||||||||+..|+|++..
T Consensus 4 ~qln~v~~~t------RL~p-lS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~ 51 (248)
T COG4138 4 MQLNDVAEST------RLGP-LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG 51 (248)
T ss_pred eeeccccccc------cccc-cccccccceEEEEECCCCccHHHHHHHHhCCCCC
Confidence 4455665532 2334 6889999999999999999999999999998753
No 386
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.20 E-value=3.9e-12 Score=104.12 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=25.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+.+++|+||||||||||++.|.+.+++.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~ 52 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT 52 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence 5689999999999999999999988653
No 387
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.17 E-value=1.6e-10 Score=92.10 Aligned_cols=118 Identities=29% Similarity=0.432 Sum_probs=85.3
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccC-CCC---C--CCchHHHHHHHHHHHHhcCc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP-RGG---E--NCVAIDLIVQHIHSQLQAGV 125 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~-~~~---~--~~~~~~~~~~~l~~~~~~~~ 125 (199)
++..+|||.|+|||||||+++.|...++...+.++++|+||+........ +.. . ...+.+.+.+++ ..+..+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L-~~L~~g~ 84 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHL-KDLKQGK 84 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHH-HHHHcCC
Confidence 45689999999999999999999999998899999999999976655543 222 1 234568889999 7777788
Q ss_pred eeecCCceeeecceecC---CeeeeeeEEeccchhHHHHHhhccccce
Q psy9640 126 SVDMPQGYTYEGKRCAV---SKICGVSILRAGETMEQAVHDVCKDIRI 170 (199)
Q Consensus 126 ~~~~~~~~~~~g~~lSg---Gq~QrvaiaRA~~~~~~~l~~~~p~~~~ 170 (199)
.+.+|.+....+.+.-- =.-+.|-|.-..+.+.+.-.+.+-++.|
T Consensus 85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kI 132 (218)
T COG0572 85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDLKI 132 (218)
T ss_pred cccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCEEE
Confidence 89999863333332210 0126788888888887755544445444
No 388
>KOG0059|consensus
Probab=99.14 E-value=3.9e-11 Score=113.80 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=53.5
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeee
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLL 86 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i 86 (199)
..+.++|+++.|+.... ++++ +++.+++||..|+.|+|||||||++++|.|...+..+.+.
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~-ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~ 623 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRG-LSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEAL 623 (885)
T ss_pred ceEEEcceeeeecchhh-hhcc-eEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEE
Confidence 56899999999987633 8999 9999999999999999999999999999998877654443
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.13 E-value=6.2e-11 Score=93.93 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=27.8
Q ss_pred cccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 44 STFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 44 ~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
++ +++.+.+| +.+|+|+||||||||+..|.-.+..
T Consensus 13 ~~-~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~ 47 (198)
T cd03276 13 RH-LQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGG 47 (198)
T ss_pred ee-eEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcC
Confidence 55 66677666 7799999999999999998765543
No 390
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.13 E-value=4e-11 Score=97.98 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=23.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.+.+|+||||||||||+..|.+.+.+
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~ 48 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGE 48 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 39999999999999999999988864
No 391
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.99 E-value=2.8e-11 Score=96.33 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=23.8
Q ss_pred ccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640 47 IAPSMVEPFVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~ 75 (199)
.++++.+| +++|+||||||||||++.|.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34556567 99999999999999999985
No 392
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.99 E-value=2.8e-10 Score=81.33 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=32.4
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~ 75 (199)
++|++ ++|.+++|++++|+||||||||||++++.
T Consensus 3 ~aL~~-vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHG-VLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEe-eEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 68899 99999999999999999999999999986
No 393
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=98.99 E-value=3.6e-10 Score=90.18 Aligned_cols=74 Identities=45% Similarity=0.679 Sum_probs=60.9
Q ss_pred ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY 198 (199)
Q Consensus 125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 198 (199)
..++.|.+..+.+......+.--|+|.||+..|.+++++++|++++|+|+++||+++.+|++||+|+|++++++
T Consensus 49 ~~v~Tp~g~~~~g~~~~~~~i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~ 122 (207)
T PF14681_consen 49 VEVETPLGHKYGGVILNEDKICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENR 122 (207)
T ss_dssp EEEEESSSEEEEEEECSSGCEEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTS
T ss_pred EEEEcCCCcEEEEEEeecccEEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCC
Confidence 35567777555554444447788999999999999999999999999999999999999999999999998654
No 394
>KOG0062|consensus
Probab=98.98 E-value=1.3e-10 Score=101.90 Aligned_cols=148 Identities=14% Similarity=0.047 Sum_probs=95.5
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeeccc------chhccccc
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMD------SFYRVHAD 97 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d------~~~~~~~~ 97 (199)
+.+++.+|+|.|.....+.+.+ +++.++.-+.++++|++|+||||+++++.+-+.|...- +... .++....+
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~-~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi-~~~~~r~ri~~f~Qhhvd 438 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQ-LGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGI-VGRHPRLRIKYFAQHHVD 438 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhc-cCCccchhhhhheeccCchhHHHHHHHHhccCCcccce-eeecccceecchhHhhhh
Confidence 3589999999996653368888 99999999999999999999999999999877654321 1111 11110000
Q ss_pred c--------c-cCCCCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------------
Q psy9640 98 I--------I-VPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------------ 156 (199)
Q Consensus 98 ~--------~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------------ 156 (199)
. . ..+. ......+++..|+......+.....+ -..|||||+-||++|-....
T Consensus 439 ~l~~~v~~vd~~~~~-~pG~~~ee~r~hl~~~Gl~g~la~~s------i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTN 511 (582)
T KOG0062|consen 439 FLDKNVNAVDFMEKS-FPGKTEEEIRRHLGSFGLSGELALQS------IASLSGGQKSRVAFAACTWNNPHLLVLDEPTN 511 (582)
T ss_pred HHHHHhHHHHHHHHh-CCCCCHHHHHHHHHhcCCCchhhhcc------ccccCCcchhHHHHHHHhcCCCcEEEecCCCc
Confidence 0 0 0000 00113345555552222222222212 24699999999999977643
Q ss_pred -----hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -----MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -----~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
..++|-+.+..-+=|+|.|+||.+
T Consensus 512 hLD~dsl~AL~~Al~~F~GGVv~VSHd~~ 540 (582)
T KOG0062|consen 512 HLDRDSLGALAKALKNFNGGVVLVSHDEE 540 (582)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEEECcHH
Confidence 566777777777779999999987
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.97 E-value=1e-10 Score=101.36 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=83.2
Q ss_pred cceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeec---ccchhccccc--cc-----
Q psy9640 30 GVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLS---MDSFYRVHAD--II----- 99 (199)
Q Consensus 30 nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~---~d~~~~~~~~--~~----- 99 (199)
++.-+|.... ..|.. -...++|.++||+|+||-||||.++.|+|.+.|..+..-. .|.......+ +.
T Consensus 79 e~vHRYg~Ng-FkL~~--LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVNG-FKLYR--LPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCCc-eEEec--CCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 3556674331 23323 3456899999999999999999999999998775443211 0111000000 00
Q ss_pred -cC---CCCCCCchHHHH--------HHHHHHHHhcC------ceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 100 -VP---RGGENCVAIDLI--------VQHIHSQLQAG------VSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 100 -~~---~~~~~~~~~~~~--------~~~l~~~~~~~------~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
.. +....+.-.+.+ .+.++..-..+ ..+.+..-++....+||||+-||+|||-|+..
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY 235 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVY 235 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEE
Confidence 00 000000000111 11111110000 11233333444667899999999999999875
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCCCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKATDE 183 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~~~ 183 (199)
+-..++++..+ .-++|+|-||=+.+|
T Consensus 236 ~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD 277 (591)
T COG1245 236 FFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAVLD 277 (591)
T ss_pred EEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHHHH
Confidence 55566666665 678899999977543
No 396
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.96 E-value=1.6e-09 Score=86.27 Aligned_cols=81 Identities=35% Similarity=0.544 Sum_probs=55.1
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcccccccc-CCC---C--CCCchHHHHHHHHHHHHhcC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIV-PRG---G--ENCVAIDLIVQHIHSQLQAG 124 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~-~~~---~--~~~~~~~~~~~~l~~~~~~~ 124 (199)
-++|++++|+|+||||||||++.|++.+....++++++|+++........ .+. . .+..+.+.+.+.+ ..+..+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~l~~g 81 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHL-KNLKNG 81 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHH-HHHHCC
Confidence 46899999999999999999999999988767788999988654322211 111 1 1122334556666 445555
Q ss_pred ceeecCCc
Q psy9640 125 VSVDMPQG 132 (199)
Q Consensus 125 ~~~~~~~~ 132 (199)
..+..|.+
T Consensus 82 ~~v~~p~y 89 (207)
T TIGR00235 82 SPIDVPVY 89 (207)
T ss_pred CCEecccc
Confidence 56677664
No 397
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.93 E-value=4.4e-10 Score=106.46 Aligned_cols=42 Identities=26% Similarity=0.322 Sum_probs=35.2
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~ 75 (199)
++++|++. ..|++ ++++|++|++++|+|+||||||||++-.+
T Consensus 613 l~l~~~~~-------~~Lk~-vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l 654 (924)
T TIGR00630 613 LTLKGARE-------NNLKN-ITVSIPLGLFTCITGVSGSGKSTLINDTL 654 (924)
T ss_pred EEEEeCcc-------CCcCc-eEEEEeCCCEEEEECCCCCCHHHHHHHHH
Confidence 55666542 46899 99999999999999999999999998543
No 398
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.90 E-value=4.1e-09 Score=83.67 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=47.9
Q ss_pred Ccccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 25 GRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 25 ~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
-+.++|++..+... ...++++ +|+++.+||+-|++|+||||||-+++.|.|.....+
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~-v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW 61 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDR-VSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNW 61 (330)
T ss_pred cccccceEEEEecCCCceEeeee-eeeeeccceeeeeeccCCCchhHHHHHHhcccccce
Confidence 46788888887432 3468899 999999999999999999999999999999776543
No 399
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.90 E-value=5.4e-09 Score=82.43 Aligned_cols=76 Identities=41% Similarity=0.654 Sum_probs=49.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccC------CCCCCCchHHHHHHHHHHHHhcCceeec
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP------RGGENCVAIDLIVQHIHSQLQAGVSVDM 129 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 129 (199)
+++|+|+||||||||++.|.+.+....+.+++.|+++......... ....+..+.+.+.+.+ ..+.....+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~~~ 79 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHL-QDLKNGKSVEI 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHH-HHHHCCCCEec
Confidence 5899999999999999999999865667888999887543322111 1112234455555555 44444445566
Q ss_pred CCc
Q psy9640 130 PQG 132 (199)
Q Consensus 130 ~~~ 132 (199)
|..
T Consensus 80 p~~ 82 (198)
T cd02023 80 PVY 82 (198)
T ss_pred ccc
Confidence 654
No 400
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.89 E-value=6.7e-10 Score=97.59 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=39.1
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS 90 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~ 90 (199)
.+|++ |++++++|++++|+||||||||||++ .++..+..++.+..++
T Consensus 20 ~vL~~-Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg 66 (504)
T TIGR03238 20 RILVK-FNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDA 66 (504)
T ss_pred HHHhC-CceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECC
Confidence 68999 99999999999999999999999999 5666666665454443
No 401
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.89 E-value=7.1e-10 Score=110.03 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=29.7
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVAT 72 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~ 72 (199)
..|++ +++++++|++++|+|+||||||||++
T Consensus 609 ~~Lk~-isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 609 HNLKD-LTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred CCccc-eEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 46899 99999999999999999999999998
No 402
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.85 E-value=1.3e-08 Score=80.96 Aligned_cols=80 Identities=35% Similarity=0.644 Sum_probs=55.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccC-C-----CCCCCchHHHHHHHHHHHHhcCc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP-R-----GGENCVAIDLIVQHIHSQLQAGV 125 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~l~~~~~~~~ 125 (199)
.++.+|+|+|+||||||||++.|++.+....+.++++|+++......... + ...+..+.+.+.+.+ ..+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~l~~~~ 82 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHL-KALKAGK 82 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHH-HHHHcCC
Confidence 57899999999999999999999999976778889999987654322111 1 111233456677777 4455555
Q ss_pred eeecCCc
Q psy9640 126 SVDMPQG 132 (199)
Q Consensus 126 ~~~~~~~ 132 (199)
.+..|..
T Consensus 83 ~v~~p~~ 89 (209)
T PRK05480 83 AIEIPVY 89 (209)
T ss_pred ccccCcc
Confidence 5666653
No 403
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.83 E-value=2.1e-09 Score=102.14 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=35.8
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~ 75 (199)
++++|++. ..|++ +++++.+|++++|+|+||||||||++.++
T Consensus 615 L~v~~l~~-------~~L~~-isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 615 LKLKGARE-------NNLKN-VDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred EEecCCcc-------CCcCc-eEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 56666641 35899 99999999999999999999999998864
No 404
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.82 E-value=1.9e-08 Score=84.13 Aligned_cols=81 Identities=26% Similarity=0.377 Sum_probs=56.0
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcC--C--Ceeeeecccchhccccccc-----cCCCCCCCchHHHHHHHHHHHH
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLN--V--PWVTLLSMDSFYRVHADII-----VPRGGENCVAIDLIVQHIHSQL 121 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~--~--~~~~~i~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~ 121 (199)
.+...++||+|+|||||||++++|.+++. + ..+.++++|+++....... ...+.....+.+.+.+.+ ..+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L-~~L 137 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFL-SDL 137 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHH-HHH
Confidence 45679999999999999999999998885 2 3466788999886433211 122333445566777776 445
Q ss_pred hcCc-eeecCCc
Q psy9640 122 QAGV-SVDMPQG 132 (199)
Q Consensus 122 ~~~~-~~~~~~~ 132 (199)
..+. .+..|.+
T Consensus 138 k~g~~~v~~P~Y 149 (290)
T TIGR00554 138 KSGKPNVTAPVY 149 (290)
T ss_pred HCCCCceecCcc
Confidence 5444 4778876
No 405
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.81 E-value=1.8e-08 Score=81.11 Aligned_cols=76 Identities=25% Similarity=0.442 Sum_probs=51.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcC----CCeeeeecccchhccccccc-----cCCCCCCCchHHHHHHHHHHHHhc-Cc
Q psy9640 56 VIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYRVHADII-----VPRGGENCVAIDLIVQHIHSQLQA-GV 125 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~----~~~~~~i~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~-~~ 125 (199)
++||+|+||||||||++.|++.+. ...+.++++|+++....... ..+......+.+.+.+.+ ..+.. ..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L-~~l~~g~~ 79 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFL-KDIKSGKK 79 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHH-HHHHCCCC
Confidence 589999999999999999999984 34577889999976533211 112223344556666666 44544 45
Q ss_pred eeecCCc
Q psy9640 126 SVDMPQG 132 (199)
Q Consensus 126 ~~~~~~~ 132 (199)
.+..|.+
T Consensus 80 ~v~~P~y 86 (220)
T cd02025 80 NVKIPVY 86 (220)
T ss_pred cEEcccc
Confidence 6777765
No 406
>PTZ00301 uridine kinase; Provisional
Probab=98.80 E-value=2.1e-08 Score=80.25 Aligned_cols=78 Identities=32% Similarity=0.543 Sum_probs=53.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc----CCCeeeeecccchhccccccccC-CC---CC--CCchHHHHHHHHHHHHhc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL----NVPWVTLLSMDSFYRVHADIIVP-RG---GE--NCVAIDLIVQHIHSQLQA 123 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l----~~~~~~~i~~d~~~~~~~~~~~~-~~---~~--~~~~~~~~~~~l~~~~~~ 123 (199)
-.+|||.|+||||||||++.|...+ ++..+.++++|+||+....+... +. .. ...+.+.+.+++ ..+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l-~~L~~ 81 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHL-RELKS 81 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHH-HHHHc
Confidence 3689999999999999999887554 45556788999998765333221 11 12 223456777778 66666
Q ss_pred CceeecCCc
Q psy9640 124 GVSVDMPQG 132 (199)
Q Consensus 124 ~~~~~~~~~ 132 (199)
+..+..|.+
T Consensus 82 g~~i~~P~y 90 (210)
T PTZ00301 82 GKTVQIPQY 90 (210)
T ss_pred CCcccCCCc
Confidence 667777765
No 407
>PLN02541 uracil phosphoribosyltransferase
Probab=98.79 E-value=1.5e-08 Score=82.53 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=59.2
Q ss_pred CceeecCCceeeecceecCC-eeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccC
Q psy9640 124 GVSVDMPQGYTYEGKRCAVS-KICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKD 197 (199)
Q Consensus 124 ~~~~~~~~~~~~~g~~lSgG-q~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 197 (199)
...++.|.+ .+.+..+... +.--|+|.||++.|.+++.+++|++++|+|+++||+.+.++++||+|+|.+++.
T Consensus 83 ~~~V~TP~g-~~~~~~~~~~~~i~~V~ILRAGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~~~yy~kLP~~i~~ 156 (244)
T PLN02541 83 TGEVQTPMG-VADVEFIDPREPVAVVPILRAGLVLLEHASSVLPATKTYHLGFVRDEETLQPSMYLNKLPDKFPE 156 (244)
T ss_pred ceEEECCCC-eEEEEeecCCCcEEEEeEeCCcHhHHHHHHhhCCCCeeEEEEEEEcccccceEEeeccCchhcCC
Confidence 345666766 2223334433 266789999999999999999999999999999999999999999999998753
No 408
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.76 E-value=3.5e-10 Score=89.58 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=27.8
Q ss_pred cccccCCCCCC-eEEEEecCCCCcHHHHHHHHH
Q psy9640 44 STFIAPSMVEP-FVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 44 ~~~vsl~i~~g-~iv~IvG~SGsGKSTLl~~L~ 75 (199)
-+ +++++.+| .+++|+||||||||||++.|.
T Consensus 18 ~~-~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 18 VP-LDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred Ec-ceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 34 68999999 489999999999999999987
No 409
>KOG1017|consensus
Probab=98.75 E-value=1.8e-08 Score=78.47 Aligned_cols=75 Identities=45% Similarity=0.862 Sum_probs=68.9
Q ss_pred CceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCCC
Q psy9640 124 GVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK 199 (199)
Q Consensus 124 ~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 199 (199)
...+..|.|+.++|-++--|. ..|+|.|++-+|+++|++|+..++||.|+|..|++|-++..||.|+|.||..++
T Consensus 117 ec~VtTPTG~kYEGikf~~GN-CGVSi~RSGEAMEqgLRdCCRsIRIGKILi~sd~~t~~akV~YArfppDI~sR~ 191 (267)
T KOG1017|consen 117 ECTVTTPTGFKYEGIKFNRGN-CGVSICRSGEAMEQGLRDCCRSIRIGKILIGSDQNTHEAKVLYARFPPDITSRR 191 (267)
T ss_pred ceeeecCCcceeeceeecCCC-cceEEEechHHHHHHHHHHHHHheeeeEEeccccccceeeEEEEecCCccccee
Confidence 346788999999988888787 689999999999999999999999999999999999999999999999998753
No 410
>KOG0066|consensus
Probab=98.74 E-value=5.3e-09 Score=90.74 Aligned_cols=50 Identities=20% Similarity=0.178 Sum_probs=42.9
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.|.++|.+.+-.+. ..+.+ .++.|-.|..+|++||||-|||||++.|+..
T Consensus 264 DIKiEnF~ISA~Gk--~LFvn-A~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~R 313 (807)
T KOG0066|consen 264 DIKIENFDISAQGK--LLFVN-ASLTIVYGRRYGLVGPNGMGKTTLLKHIAAR 313 (807)
T ss_pred cceeeeeeeecccc--eeeec-cceEEEecceecccCCCCCchHHHHHHHHhh
Confidence 57788877766554 67788 8999999999999999999999999999864
No 411
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.74 E-value=2.5e-08 Score=77.79 Aligned_cols=76 Identities=32% Similarity=0.466 Sum_probs=51.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCC--CeeeeecccchhccccccccCCCCCC-C--chHHHHHHHHHHHHhcCceeecC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRVHADIIVPRGGEN-C--VAIDLIVQHIHSQLQAGVSVDMP 130 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~~~~~~~~~~~ 130 (199)
+++|.|+||||||||++.|+..+.. ..+..+++|++++.........+..+ + .+.+.+.+++ ..+.....+..|
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l-~~l~~~~~~~~p 79 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNL-HDLLNGKEVELP 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHH-HHHHCCCeeecc
Confidence 5899999999999999999998752 35667899999875411111111111 1 3567777777 446566677777
Q ss_pred Cc
Q psy9640 131 QG 132 (199)
Q Consensus 131 ~~ 132 (199)
.+
T Consensus 80 ~y 81 (179)
T cd02028 80 IY 81 (179)
T ss_pred cc
Confidence 64
No 412
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.72 E-value=3.5e-09 Score=81.18 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=25.1
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
++.+.++.+..|+|||||||||+++.+.-.+
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455566799999999999999999976544
No 413
>KOG4203|consensus
Probab=98.71 E-value=1.5e-08 Score=89.80 Aligned_cols=191 Identities=40% Similarity=0.633 Sum_probs=111.6
Q ss_pred CeeeecCchhHHhhhhhcccccccCcccccceeeccccccccccccccCCCC-CCeEEEEecCC-----CCcHHHHHHHH
Q psy9640 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMV-EPFVIGICGGS-----ASGKTTVATKI 74 (199)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~-~g~iv~IvG~S-----GsGKSTLl~~L 74 (199)
+|+|+|++.|.++..++.++....+..++++..+|....++.+..|+.-+-. ..-++-..|.+ .+.+-.+.++.
T Consensus 176 ~k~fvd~~~d~rla~ri~r~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~n~vai~l~~~~i~~~L~ 255 (473)
T KOG4203|consen 176 MKLFVDTDADVRLARRILRDIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGDNDVAIDLIVQHILSILA 255 (473)
T ss_pred ceEEEecCcchhhHHHHhcchhhhcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccccccccceeeehhhhhhhh
Confidence 6899999999999999999999999999999999976555555554432211 11222222211 11111111111
Q ss_pred HHHcCCCeeeeecccchhccc-cc-----cccCCCCCCCchHHHHHHHHHHHHhc---------CceeecCCceeeecce
Q psy9640 75 IESLNVPWVTLLSMDSFYRVH-AD-----IIVPRGGENCVAIDLIVQHIHSQLQA---------GVSVDMPQGYTYEGKR 139 (199)
Q Consensus 75 ~~~l~~~~~~~i~~d~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~g~~ 139 (199)
.+-.. .+..+.+.... .. ....+..-...++....+++.....+ ...+..+.+....+.+
T Consensus 256 ~~~~~-----~l~~~~~~l~~t~~i~~~~t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~~~p~~~~~i~~~~~~~~~~~~ 330 (473)
T KOG4203|consen 256 EKSYV-----RLYNNVLSLPDTNQIKGKLTLLRDHTTSRHPFSFYSDHLVRLVLEHGLGHLPYTEKRIVTPRGLAYSGVN 330 (473)
T ss_pred ccccc-----cccccceecCCccccCCceeEeecCCcCCCCHHHHHHHHHHHHhhcccCcccceeeeEecccccchhccc
Confidence 00000 00000000000 00 00011111112222222222121211 1223333343334555
Q ss_pred ecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccC
Q psy9640 140 CAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKD 197 (199)
Q Consensus 140 lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 197 (199)
.- .|.+.+++-||+-.|...+++++++.++++|+++||+++.+|++||.++|+++..
T Consensus 331 ~~-~~i~gv~i~r~g~~~~~alr~~~~~vri~~il~qr~~~t~~~~l~~~~lP~~is~ 387 (473)
T KOG4203|consen 331 FC-KQICGVSIPRSGESMETALRAACKGVRIGKILIQRDEETGEPELHYEKLPKDISD 387 (473)
T ss_pred cc-chhccCCCCcchhHHHHHHHHHcCCceeeeeEeechhhccchhhhhhhCcccccc
Confidence 54 7888999999999999999999999999999999999999999999999999865
No 414
>PLN02796 D-glycerate 3-kinase
Probab=98.70 E-value=2.8e-08 Score=84.54 Aligned_cols=90 Identities=27% Similarity=0.380 Sum_probs=59.4
Q ss_pred ccccccccCCC---C-----CCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhcccccccc----------
Q psy9640 41 PAFSTFIAPSM---V-----EPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVHADIIV---------- 100 (199)
Q Consensus 41 ~~l~~~vsl~i---~-----~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~~~~~~~~---------- 100 (199)
.++++ +++++ + +..++||+|+||||||||++.|.+.+... ..+.++.|++|........
T Consensus 80 ~il~~-l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~L 158 (347)
T PLN02796 80 WCEDQ-LEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNAL 158 (347)
T ss_pred HHHHH-HHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhh
Confidence 56677 77776 3 44569999999999999999999998754 5788999999864432211
Q ss_pred --CCCCCCCchHHHHHHHHHHHHh----cCceeecCCc
Q psy9640 101 --PRGGENCVAIDLIVQHIHSQLQ----AGVSVDMPQG 132 (199)
Q Consensus 101 --~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~ 132 (199)
.|+.....+.+...+.+ ..+. .+..+..|.+
T Consensus 159 l~~RG~PgThDl~Ll~e~L-~~L~~~~~~g~~v~iP~y 195 (347)
T PLN02796 159 LELRGNAGSHDLALGVETL-EALRKLNKEGSKMKVPRY 195 (347)
T ss_pred hhcCCCCchhHHHHHHHHH-HHHHhhhcCCCceecCCC
Confidence 11112234445566555 3333 3556778876
No 415
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.70 E-value=3.8e-09 Score=82.39 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.+.+|+||||||||+++..|.-.+.
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3999999999999999988865443
No 416
>KOG0065|consensus
Probab=98.66 E-value=1.3e-08 Score=97.58 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=36.9
Q ss_pred cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 38 MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 38 ~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..+..|+| |+=-++||-..||+|+||||||||+++|++..
T Consensus 802 ~~~qLL~~-V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~ 841 (1391)
T KOG0065|consen 802 GTRQLLNN-VSGAFKPGVLTALMGESGAGKTTLLDVLAGRK 841 (1391)
T ss_pred cceEhhhc-CceEecCCceeehhcCCCCchHHHHHHHhcCc
Confidence 34679999 99999999999999999999999999999875
No 417
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.66 E-value=1.5e-08 Score=88.64 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=51.7
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS 90 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~ 90 (199)
-+++++++..-... ...+++ |||++..||++||+|-+|-|.+.|+..|+|+..+.. |.+..++
T Consensus 257 vL~V~~L~v~~~~~-~~~v~~-vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~-G~I~l~G 319 (501)
T COG3845 257 VLEVEDLSVKDRRG-VTAVKD-VSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS-GRILLNG 319 (501)
T ss_pred EEEEeeeEeecCCC-Cceeee-eeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC-ceEEECC
Confidence 48899998875432 367899 999999999999999999999999999999886655 4444443
No 418
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.65 E-value=2e-08 Score=86.85 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=49.4
Q ss_pred ccCcccccceeecccccccccc-----------ccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFS-----------TFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~-----------~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
...+.++||++.|++. +.+|+ | +.+.+.+|+.++|+||+|||||||++.|+..+..
T Consensus 128 ~~ri~Fe~LTf~YP~e-r~~Le~~~~~~~~R~id-~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 128 KNRVLFENLTPLYPNE-RLRLETSTEDLSTRVLD-LFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCeEEEEeeecCCCc-cceeecCccccceeeee-eEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 3469999999999875 36786 8 9999999999999999999999999999987643
No 419
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.62 E-value=3.2e-08 Score=81.11 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=29.7
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
=+.+.+|+.++|+|++|+|||||++.|.+.+..
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 457889999999999999999999999987754
No 420
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.61 E-value=1.8e-07 Score=84.42 Aligned_cols=108 Identities=19% Similarity=0.333 Sum_probs=65.7
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCCCC--chHHHHHHHHHHHHhcCceeec
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENC--VAIDLIVQHIHSQLQAGVSVDM 129 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 129 (199)
....+|||.||||||||||++.|++.+ +..+++++|+++..... .......+ .+.+.+.+++ ..+..+..+..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL--p~vgvIsmDdy~~~~~~--i~~nfD~P~a~D~d~L~enL-~~Lr~GksV~i 137 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVISMDNYNDSSRI--IDGNFDDPRLTDYDTLLDNI-HDLKAGKSVQV 137 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC--CCcEEEEEcceecchhh--hCccCCChhhcchhHHHHHH-HHHhCCCceec
Confidence 345799999999999999999999987 35788999998532211 11111122 2345666777 55666666777
Q ss_pred CCceeeecceecCCe-----eeeeeEEeccchhHHHHHhhc
Q psy9640 130 PQGYTYEGKRCAVSK-----ICGVSILRAGETMEQAVHDVC 165 (199)
Q Consensus 130 ~~~~~~~g~~lSgGq-----~QrvaiaRA~~~~~~~l~~~~ 165 (199)
|.+ +..-...++.. ..+|-|.-....+.+.+...+
T Consensus 138 PiY-Df~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr~Ll 177 (656)
T PLN02318 138 PIY-DFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLRPLL 177 (656)
T ss_pred Ccc-ccccCcccCCceeecCCCcEEEEechhhccHhHHhhC
Confidence 765 33211222221 124566666666666665555
No 421
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.59 E-value=3.6e-08 Score=79.00 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=25.8
Q ss_pred ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+.+...+| +.+|+|+||||||||+..|.-.+..
T Consensus 17 ~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~ 49 (213)
T cd03277 17 TEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGG 49 (213)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45555444 6689999999999999999776643
No 422
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.57 E-value=5e-08 Score=86.44 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=38.4
Q ss_pred cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640 42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS 90 (199)
Q Consensus 42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~ 90 (199)
.++| +||++.+||++||.|--|||+|-+++.|.|... ...|.+..++
T Consensus 274 ~~~d-vSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-~~~G~i~l~G 320 (500)
T COG1129 274 KVRD-VSFTVRAGEILGIAGLVGAGRTELARALFGARP-ASSGEILLDG 320 (500)
T ss_pred ceeC-ceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-CCCceEEECC
Confidence 4688 999999999999999999999999999999443 3345554444
No 423
>PRK05439 pantothenate kinase; Provisional
Probab=98.55 E-value=3.2e-07 Score=77.36 Aligned_cols=82 Identities=28% Similarity=0.421 Sum_probs=57.6
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcCC----Ceeeeecccchhcccccccc-----CCCCCCCchHHHHHHHHHHH
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLNV----PWVTLLSMDSFYRVHADIIV-----PRGGENCVAIDLIVQHIHSQ 120 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~----~~~~~i~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~ 120 (199)
.-....+|||.|++||||||+++.|...+.. ..+.++++|+|+.....+.. .++.....+.+.+.+.+ ..
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L-~~ 160 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFL-SD 160 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHH-HH
Confidence 3456789999999999999999999987742 46889999999876543321 12233345567777777 55
Q ss_pred HhcCc-eeecCCc
Q psy9640 121 LQAGV-SVDMPQG 132 (199)
Q Consensus 121 ~~~~~-~~~~~~~ 132 (199)
+..+. .+..|.+
T Consensus 161 Lk~G~~~v~~P~Y 173 (311)
T PRK05439 161 VKSGKPNVTAPVY 173 (311)
T ss_pred HHcCCCeEEeeeE
Confidence 55544 3777776
No 424
>PLN02348 phosphoribulokinase
Probab=98.55 E-value=2.6e-07 Score=79.77 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=56.2
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC-----------------Ceeeeecccchhcccccccc--CCCCC--CC
Q psy9640 49 PSMVEPFVIGICGGSASGKTTVATKIIESLNV-----------------PWVTLLSMDSFYRVHADIIV--PRGGE--NC 107 (199)
Q Consensus 49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~-----------------~~~~~i~~d~~~~~~~~~~~--~~~~~--~~ 107 (199)
-.-+...+|||.|+|||||||+++.|...++. ....++++|+|+........ ..... ..
T Consensus 44 ~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a 123 (395)
T PLN02348 44 AADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRA 123 (395)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCccc
Confidence 33456789999999999999999999998852 34567899998753221100 11111 23
Q ss_pred chHHHHHHHHHHHHhcCceeecCCc
Q psy9640 108 VAIDLIVQHIHSQLQAGVSVDMPQG 132 (199)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~~~~~ 132 (199)
.+++.+.+++ ..+..+..+..|.+
T Consensus 124 ~dfDll~~~L-~~Lk~G~~I~~PiY 147 (395)
T PLN02348 124 NNFDLMYEQV-KALKEGKAVEKPIY 147 (395)
T ss_pred ccHHHHHHHH-HHHHCCCcEEeecc
Confidence 4566777777 66666767777765
No 425
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.53 E-value=3e-07 Score=74.34 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=35.7
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee--e-ecccchhcc
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVT--L-LSMDSFYRV 94 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~--~-i~~d~~~~~ 94 (199)
-.++.++||+|+||||||||++.|++.+.+..+. + ++.|+++..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~ 76 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLD 76 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCC
Confidence 4568999999999999999999999998765432 3 778887654
No 426
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.52 E-value=3.9e-07 Score=75.74 Aligned_cols=76 Identities=20% Similarity=0.363 Sum_probs=48.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccc--cCCCCCCC--chHHHHHHHHHHHHhcCceeecCC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADII--VPRGGENC--VAIDLIVQHIHSQLQAGVSVDMPQ 131 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~--~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~ 131 (199)
++||+|+||||||||++.|++.+.+..+.++..|+++....... ......++ ..++.+.+.+ ..+.....+..|.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l-~~Lk~g~~i~~P~ 79 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQL-KALKEGQAIEKPI 79 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHH-HHHHCCCCccccc
Confidence 58999999999999999999999877777788887754211100 00111122 2345555666 5555555566665
Q ss_pred c
Q psy9640 132 G 132 (199)
Q Consensus 132 ~ 132 (199)
+
T Consensus 80 y 80 (273)
T cd02026 80 Y 80 (273)
T ss_pred c
Confidence 4
No 427
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.52 E-value=1.9e-07 Score=73.46 Aligned_cols=111 Identities=24% Similarity=0.300 Sum_probs=64.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCCe------eeeecccchhccccccc---cC---CCCC--CCchHHHHHHHHHHHH
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVPW------VTLLSMDSFYRVHADII---VP---RGGE--NCVAIDLIVQHIHSQL 121 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~~------~~~i~~d~~~~~~~~~~---~~---~~~~--~~~~~~~~~~~l~~~~ 121 (199)
+|||.|+|||||||+++.|...+.... ...++.|+++....... .. .... ...+++.+.+.+ ..+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l-~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDL-KAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHH-HHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHH-HHH
Confidence 699999999999999999999987432 45667777764332111 11 1112 234567777777 566
Q ss_pred hcCceeecCCceee-----ec-ceecCCeeeeeeEEeccchhHHHHHhhccccce
Q psy9640 122 QAGVSVDMPQGYTY-----EG-KRCAVSKICGVSILRAGETMEQAVHDVCKDIRI 170 (199)
Q Consensus 122 ~~~~~~~~~~~~~~-----~g-~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~ 170 (199)
..+..+..|.+ +. .+ .... ....|-|.-.+..+...-.+.+-+..|
T Consensus 80 ~~g~~i~~p~y-d~~~~~~~~~~~~~--~~~~ivIvEG~~~l~~~~l~~l~D~~i 131 (194)
T PF00485_consen 80 KNGGSIEIPIY-DFSTGDRDPWIIII--SPSDIVIVEGIYALYDEELRDLFDLKI 131 (194)
T ss_dssp HTTSCEEEEEE-ETTTTEEEEEEEEE--ES-SEEEEEETTTTSSHCHGGG-SEEE
T ss_pred hCCCccccccc-ccccccceeeeeec--CCCCEEEEcccceeeeeeecccceeEE
Confidence 66667777764 32 11 1111 124666666666554333334445555
No 428
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.50 E-value=4.4e-07 Score=79.00 Aligned_cols=42 Identities=33% Similarity=0.472 Sum_probs=36.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhcc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRV 94 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~~ 94 (199)
++.+|||+|+||||||||++.|.+.+... .++.++.|++|..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt 254 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLT 254 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCC
Confidence 56999999999999999999999888543 5788999999864
No 429
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.49 E-value=1.1e-07 Score=75.38 Aligned_cols=35 Identities=26% Similarity=0.182 Sum_probs=29.0
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.++++ +++. .|++++|+||||||||||+|.|++..
T Consensus 15 ~v~n~-i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 15 RVAND-IDME--KKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred eecce-EEEc--CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 45666 6665 47999999999999999999998754
No 430
>KOG0063|consensus
Probab=98.48 E-value=3e-08 Score=85.71 Aligned_cols=56 Identities=16% Similarity=0.107 Sum_probs=41.5
Q ss_pred ceeeccccccccccccccCCCCCC-----eEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecc
Q psy9640 31 VIKQYVNMVKPAFSTFIAPSMVEP-----FVIGICGGSASGKTTVATKIIESLNVPWVTLLSM 88 (199)
Q Consensus 31 vs~~y~~~~~~~l~~~vsl~i~~g-----~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~ 88 (199)
..+.|++.. ..+.+ ..+.|+.| +++..+|+||-||||++++++|.+.++..+.++.
T Consensus 341 ~~y~Yp~m~-k~~g~-F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~ 401 (592)
T KOG0063|consen 341 GRYSYPKMK-KTVGD-FCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV 401 (592)
T ss_pred heeccCcce-eeeee-EEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc
Confidence 345666652 34455 56666655 6899999999999999999999988877665543
No 431
>PRK07429 phosphoribulokinase; Provisional
Probab=98.47 E-value=1.1e-06 Score=74.76 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=52.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccc--cCCCCCCC--chHHHHHHHHHHHHhcCcee
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADII--VPRGGENC--VAIDLIVQHIHSQLQAGVSV 127 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~--~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 127 (199)
.+..++||+|+|||||||+++.|++.+++..+.++..|+++....... ......++ ...+.+.+++ ..+.....+
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l-~~L~~g~~I 84 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHL-KALKTGQPI 84 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHH-HHHHCCCce
Confidence 456799999999999999999999999888778888888753211100 11111122 2345666666 555555556
Q ss_pred ecCCc
Q psy9640 128 DMPQG 132 (199)
Q Consensus 128 ~~~~~ 132 (199)
..|..
T Consensus 85 ~~P~y 89 (327)
T PRK07429 85 LKPIY 89 (327)
T ss_pred eccee
Confidence 66654
No 432
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.45 E-value=1.5e-07 Score=86.83 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=29.9
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKI 74 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L 74 (199)
.=|+| |+++|+-|.+++|.|-||||||||++-.
T Consensus 615 nNLkn-i~v~iPLg~~t~VTGVSGSGKSTLIn~t 647 (935)
T COG0178 615 NNLKN-IDVEIPLGVFTCVTGVSGSGKSTLINDT 647 (935)
T ss_pred cCccc-ceeecccccEEEEEecCCCCHHHhHHHH
Confidence 56899 9999999999999999999999999544
No 433
>PRK15494 era GTPase Era; Provisional
Probab=98.41 E-value=2.6e-07 Score=79.05 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=52.5
Q ss_pred hcccccccCcccccceeeccccccccccccccCCCCCCe-------EEEEecCCCCcHHHHHHHHHHH
Q psy9640 17 LKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPF-------VIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 17 ~~~~~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~-------iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
+.++.....+++++++++|+ ....++.. ++++++.|+ .++|+|.+|+|||||++.|.+.
T Consensus 10 ~~~~~~~g~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 10 AYREEFKGDTEALAAAVRED-ASTGSTSK-LPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred ccchhhCCccccccccccCC-CCcccccC-CccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 45677788999999999998 44678899 999999999 9999999999999999999864
No 434
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.41 E-value=1.6e-07 Score=73.46 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=32.0
Q ss_pred ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+.+.+++|+.++|+||+|||||||++.|++.+.+.
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~ 52 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD 52 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 67789999999999999999999999999988654
No 435
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.37 E-value=9.9e-07 Score=72.70 Aligned_cols=76 Identities=20% Similarity=0.167 Sum_probs=53.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccchhcccccccc----------CCC--C--CCCchHHHHHHHHHH
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRVHADIIV----------PRG--G--ENCVAIDLIVQHIHS 119 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~~~~~~~~~----------~~~--~--~~~~~~~~~~~~l~~ 119 (199)
+++|.|.|||||||+++.+...+.. ..+.++..|++|+. ..... ... . .+..+++.+.+++ .
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~-~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l-~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRY-ERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF-R 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccC-CchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH-H
Confidence 5899999999999999999987753 35778999999882 22111 011 1 2234567888888 7
Q ss_pred HHhcCceeecCCce
Q psy9640 120 QLQAGVSVDMPQGY 133 (199)
Q Consensus 120 ~~~~~~~~~~~~~~ 133 (199)
.+.+...++.|.+.
T Consensus 79 ~L~~g~~i~~p~Y~ 92 (277)
T cd02029 79 TYGETGRGRSRYYL 92 (277)
T ss_pred HHHcCCCcccceee
Confidence 77777778888763
No 436
>PRK15453 phosphoribulokinase; Provisional
Probab=98.37 E-value=1.3e-06 Score=72.44 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=52.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhc-ccccccc------CCC----C--CCCchHHHHHHH
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYR-VHADIIV------PRG----G--ENCVAIDLIVQH 116 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~-~~~~~~~------~~~----~--~~~~~~~~~~~~ 116 (199)
+++-+|+|.|.|||||||+++.|+..+... ...++..|++++ ....+.. .+. . .+..+++.+.++
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~ 82 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL 82 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 467799999999999999999998877543 356788899886 3222211 111 1 223456788888
Q ss_pred HHHHHhcCceeecCCc
Q psy9640 117 IHSQLQAGVSVDMPQG 132 (199)
Q Consensus 117 l~~~~~~~~~~~~~~~ 132 (199)
+ ..+.+......|.+
T Consensus 83 l-~~l~~~~~g~~~~Y 97 (290)
T PRK15453 83 F-REYGETGTGKTRKY 97 (290)
T ss_pred H-HHHhcCCCcceeec
Confidence 8 55555444455543
No 437
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.35 E-value=4.2e-07 Score=70.70 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=26.9
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+|++++|+|+|||||||+++.|++.+.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 68999999999999999999999998763
No 438
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.34 E-value=4.5e-07 Score=71.67 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=26.5
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.++|++++|+||||||||||+++|++.+.
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36899999999999999999999999864
No 439
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.34 E-value=3.7e-07 Score=71.43 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=24.7
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
|++++|+||||||||||+++|++.+.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 789999999999999999999887764
No 440
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=98.33 E-value=1.4e-06 Score=69.59 Aligned_cols=74 Identities=36% Similarity=0.510 Sum_probs=63.8
Q ss_pred CceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640 124 GVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY 198 (199)
Q Consensus 124 ~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 198 (199)
...++.|.+. +.+..+.+.+.--|+|.|++..|...+.+.+|.+++++|.++||.++.+++.||.++|++++++
T Consensus 50 ~~~v~tp~g~-~~~~~~~~~~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~ 123 (207)
T TIGR01091 50 EVEVETPLGE-TEGGRILGKKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDER 123 (207)
T ss_pred eEEEECCCCc-EEEeEecCCcEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCC
Confidence 3456777773 4566677667888999999999999999999999999999999999999999999999988764
No 441
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.33 E-value=1.7e-06 Score=68.02 Aligned_cols=65 Identities=23% Similarity=0.421 Sum_probs=44.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCC-C-----CCCCchHHHHHHHHHHHHhc
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPR-G-----GENCVAIDLIVQHIHSQLQA 123 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~l~~~~~~ 123 (199)
+|+|.|+|||||||+++.|+..+. ...++++|+++.......... . .....+.+.+.+.+ ..+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~--~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L-~~l~~ 71 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP--NCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTL-DYWRE 71 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC--CCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHH-HHHHc
Confidence 589999999999999999999874 355789999987655433221 1 12234557777777 44433
No 442
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.31 E-value=9.7e-07 Score=79.06 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=44.5
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcccccccc
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIV 100 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~ 100 (199)
..++| +.+.. ++.+++|.|||||||||+++.|+..++ ..++..+.+|+.......
T Consensus 273 RLIDN-~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~---~~~~d~g~~YR~~a~~~l 327 (512)
T PRK13477 273 RLIDN-VFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLG---LLYLDTGAMYRAVTWLVL 327 (512)
T ss_pred EEEee-eEecc-CCcEEEEECCCCCCHHHHHHHHHHHcC---CeEecCCceehHHHHHHH
Confidence 67899 88877 889999999999999999999999885 345566777776544333
No 443
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.29 E-value=8.2e-07 Score=78.14 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=46.9
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
+-++.++++..|... ..+++. ++ .+.+|++++|+|+||||||||+++|++...+..
T Consensus 138 ~~~~r~~v~~~l~TG-i~aID~-L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~ 193 (450)
T PRK06002 138 PAMTRARVETGLRTG-VRVIDI-FT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDT 193 (450)
T ss_pred CCeEeecceEEcCCC-cEEeee-ec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCe
Confidence 357889999999654 478888 64 899999999999999999999999988766544
No 444
>PRK06696 uridine kinase; Validated
Probab=98.26 E-value=9.5e-07 Score=71.10 Aligned_cols=46 Identities=33% Similarity=0.420 Sum_probs=36.4
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhccc
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVH 95 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~~~ 95 (199)
.-....+|+|.|+||||||||++.|+..+... .+-.+++|+|+...
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~ 65 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR 65 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH
Confidence 34567899999999999999999999988533 34446789998754
No 445
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.26 E-value=7.4e-07 Score=70.97 Aligned_cols=37 Identities=22% Similarity=0.006 Sum_probs=33.7
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+.++ +++++.+|++++|.|||||||||+++.+++..
T Consensus 17 ~v~~~-~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 17 FIPND-IYLTRGSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred EEEee-eEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57888 99999999999999999999999999987643
No 446
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.24 E-value=7.1e-07 Score=70.70 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=26.8
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
++++.+|++++|+|||||||||+++.|++.
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 566778999999999999999999999843
No 447
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.24 E-value=1.4e-06 Score=56.10 Aligned_cols=34 Identities=26% Similarity=0.135 Sum_probs=26.1
Q ss_pred ccCCCC-CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 47 IAPSMV-EPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 47 vsl~i~-~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
..+++. .|.+..|.|+|||||||++..+.-.+.+
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344554 3569999999999999999888765543
No 448
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=98.22 E-value=3.1e-06 Score=67.65 Aligned_cols=74 Identities=38% Similarity=0.572 Sum_probs=64.5
Q ss_pred CceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640 124 GVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY 198 (199)
Q Consensus 124 ~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 198 (199)
...++.|.+ .+.|..+.+.+---|+|.|++..|...+.+.+|.+.+++|.++||.++.+++.||.++|.+++++
T Consensus 52 ~~~v~tp~g-~~~g~~~~~~~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~ 125 (209)
T PRK00129 52 EVEIETPLG-KTTGKRIAGKKLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDER 125 (209)
T ss_pred EEEEECCCC-cEEEEEecCCeEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCC
Confidence 345677777 56777777666778999999999999999999999999999999988999999999999988764
No 449
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.21 E-value=1.3e-06 Score=67.63 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=24.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
|++++|+|||||||||+++.|++.+..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 578999999999999999999988753
No 450
>KOG0065|consensus
Probab=98.21 E-value=3.7e-06 Score=81.27 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=36.4
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.+++++ ++.-+++|+.+.+.||.|||||||++.|+|.+.
T Consensus 128 ~~il~~-~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~ 166 (1391)
T KOG0065|consen 128 IQILKD-ISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLD 166 (1391)
T ss_pred ceeecC-cceeEcCCceEEEecCCCCchHHHHHHHhCCCc
Confidence 368999 999999999999999999999999999999774
No 451
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.20 E-value=1.3e-06 Score=63.01 Aligned_cols=32 Identities=47% Similarity=0.711 Sum_probs=26.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS 90 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~ 90 (199)
+|+|+|+|||||||+++.|+..++.. ++..|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~---~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFP---VISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCE---EEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCe---EEEecc
Confidence 58999999999999999999987533 344555
No 452
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=2.4e-06 Score=74.82 Aligned_cols=43 Identities=28% Similarity=0.336 Sum_probs=35.5
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHc----CCCeeeeecccchhc
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESL----NVPWVTLLSMDSFYR 93 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l----~~~~~~~i~~d~~~~ 93 (199)
+.+|.+++++||||+||||+++.|++.+ ++..++++..|.+..
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri 234 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI 234 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch
Confidence 4789999999999999999999999864 446677777777643
No 453
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.17 E-value=2.7e-06 Score=75.73 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=39.7
Q ss_pred cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC----CCeeeeecccch
Q psy9640 42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSF 91 (199)
Q Consensus 42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~----~~~~~~i~~d~~ 91 (199)
++++ .++.+.+|.+++++|||||||||++.+|++.+. ...++++..|.+
T Consensus 245 ~~~~-~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~ 297 (484)
T PRK06995 245 VLDS-EDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY 297 (484)
T ss_pred hccC-ccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence 4555 666788899999999999999999999998773 235777887765
No 454
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.14 E-value=1.6e-06 Score=67.12 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
|.+++|+||||||||||++.|++.+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 67999999999999999999998653
No 455
>PRK08233 hypothetical protein; Provisional
Probab=98.13 E-value=3.3e-06 Score=65.17 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=29.5
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 92 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~ 92 (199)
++.+|+|.|++||||||+++.|+..+... .++..|.++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~--~~~~~d~~~ 39 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNS--KALYFDRYD 39 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCC--ceEEECCEE
Confidence 46899999999999999999999988533 334455443
No 456
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.12 E-value=1.5e-06 Score=76.31 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=36.7
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
..++++ + +++.+|++++|+|+||||||||+++|++...+.
T Consensus 143 i~aID~-l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~d 182 (434)
T PRK07196 143 VNAING-L-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD 182 (434)
T ss_pred eeeccc-e-EeEecceEEEEECCCCCCccHHHHHHhcccCCC
Confidence 478999 8 999999999999999999999999999987655
No 457
>PRK07667 uridine kinase; Provisional
Probab=98.09 E-value=1.6e-05 Score=62.63 Aligned_cols=43 Identities=28% Similarity=0.413 Sum_probs=34.5
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccchhcc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRV 94 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~~~ 94 (199)
....+|||.|++||||||+++.|...+.. ..+.+++.|+++..
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~ 59 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE 59 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence 44579999999999999999999987743 24567888887754
No 458
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.08 E-value=3.6e-06 Score=66.46 Aligned_cols=38 Identities=32% Similarity=0.249 Sum_probs=30.1
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecc
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSM 88 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~ 88 (199)
-.+|.+++|+|+|||||||+++.|.+.+.+...+.+..
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 36899999999999999999999999875443333333
No 459
>PRK06547 hypothetical protein; Provisional
Probab=98.08 E-value=4.8e-06 Score=64.56 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=31.8
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 93 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~ 93 (199)
-....+|+|.|+|||||||+++.|+..++ ..+++.|+++.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~---~~~~~~d~~~~ 51 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTG---FQLVHLDDLYP 51 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhC---CCeecccceec
Confidence 45667999999999999999999998765 33556777664
No 460
>COG4240 Predicted kinase [General function prediction only]
Probab=98.07 E-value=1.6e-05 Score=63.95 Aligned_cols=83 Identities=28% Similarity=0.439 Sum_probs=56.5
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHc---CCCeeeeecccchhcccccc----------ccCCCCCCCchHHHHHHH
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSFYRVHADI----------IVPRGGENCVAIDLIVQH 116 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l---~~~~~~~i~~d~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 116 (199)
.-..+.+++|.||.||||||+.-.|-..+ +....+.++.|++|....+. ...|+.....+.......
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 44568999999999999999998876655 22467889999998766542 123444556677777666
Q ss_pred HHHHHhcCceeecCCc
Q psy9640 117 IHSQLQAGVSVDMPQG 132 (199)
Q Consensus 117 l~~~~~~~~~~~~~~~ 132 (199)
++........+.+|.+
T Consensus 126 Lnai~~g~~~V~lPrf 141 (300)
T COG4240 126 LNAIARGGPTVPLPRF 141 (300)
T ss_pred HHHHhcCCCCcccccc
Confidence 6444443444556654
No 461
>PRK07261 topology modulation protein; Provisional
Probab=98.05 E-value=4.9e-06 Score=64.35 Aligned_cols=26 Identities=46% Similarity=0.617 Sum_probs=23.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.++|+|+||||||||++.|+..++.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~ 27 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCP 27 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 68999999999999999999887654
No 462
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.04 E-value=4.2e-06 Score=64.69 Aligned_cols=31 Identities=39% Similarity=0.491 Sum_probs=27.7
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
..+|.++.++|++||||||+++.|+..+...
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~ 34 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLK 34 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4688999999999999999999999888643
No 463
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=8.4e-06 Score=70.45 Aligned_cols=50 Identities=28% Similarity=0.385 Sum_probs=40.8
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc----CCCeeeeecccch
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL----NVPWVTLLSMDSF 91 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l----~~~~~~~i~~d~~ 91 (199)
+++++ .++.+.+|.+++++||+|+||||++..|++.+ +...++++..|.+
T Consensus 125 ~~~~~-~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 125 PVLDS-EDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred hhhcC-CCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 45666 67788999999999999999999999999864 2246777777766
No 464
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.00 E-value=3.7e-06 Score=71.02 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=31.4
Q ss_pred cccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 46 FIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 46 ~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
|+++.++.|..++|+|++|||||||++.|++.+.+.
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~ 171 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD 171 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc
Confidence 355678899999999999999999999999988654
No 465
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.00 E-value=5.2e-06 Score=66.63 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=30.5
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.+.++ ++++..+ ++++|+|||||||||+++.+++.
T Consensus 19 ~v~n~-~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 19 FVPND-TELDPER-QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred eEeee-EEecCCc-eEEEEECCCCCChHHHHHHHHHH
Confidence 46678 8888876 99999999999999999999753
No 466
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.99 E-value=5e-06 Score=67.09 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=32.9
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
.+.++ +++.+.+|++++|.||||+||||+++.+++
T Consensus 19 ~v~n~-i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 19 FVPND-IHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEEe-EEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 56788 999999999999999999999999999988
No 467
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.98 E-value=1.8e-05 Score=58.61 Aligned_cols=35 Identities=34% Similarity=0.635 Sum_probs=27.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 93 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~ 93 (199)
++.++|++||||||+++.|+..++ .-.++.|.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~---~~~i~~D~~~~ 35 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG---AVVISQDEIRR 35 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST---EEEEEHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC---CEEEeHHHHHH
Confidence 578999999999999999998776 33455665544
No 468
>PRK08149 ATP synthase SpaL; Validated
Probab=97.97 E-value=4.4e-06 Score=73.31 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=36.5
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
..++++ + +.+.+|++++|+|+||||||||+++|++...+..
T Consensus 139 i~aid~-l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv 179 (428)
T PRK08149 139 VRAIDG-L-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADV 179 (428)
T ss_pred cEEEee-e-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCe
Confidence 368999 8 9999999999999999999999999998776553
No 469
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.97 E-value=1.5e-06 Score=81.67 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=26.9
Q ss_pred cCCCCCC-eEEEEecCCCCcHHHHHHHHHHH
Q psy9640 48 APSMVEP-FVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 48 sl~i~~g-~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
++.+..+ .+++|+||||+||||+++.+++.
T Consensus 315 di~l~~~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 315 TLNLKFEKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eeEeCCCceEEEEECCCCCCchHHHHHHHHH
Confidence 6677666 89999999999999999999886
No 470
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.97 E-value=5.6e-06 Score=68.63 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=47.5
Q ss_pred CcccccceeeccccccccccccccCCCC-------CCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccchh
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMV-------EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFY 92 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~-------~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~ 92 (199)
.+.++++++.+......++++ +++.+. +|++++++|++|+||||+++.|++.+.. ..++++..|.++
T Consensus 40 ~i~f~~~~~~~~~vl~~v~~~-l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 40 KVKFENATMITEEVIEYILED-MSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred eEEecCCCccccHHHHHHhcc-cEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 355566665553322345666 666665 4589999999999999999999987743 467778877654
No 471
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=1.1e-05 Score=75.06 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=40.7
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC----CCeeeeecccchh
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFY 92 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~----~~~~~~i~~d~~~ 92 (199)
+++++ .++.+++|.+++++||||+||||++.+|++.+. ...+.++..|.+.
T Consensus 173 ~il~~-~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 173 PVLRD-EDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred hhccC-CCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 35566 777788899999999999999999999998772 2356777777654
No 472
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.95 E-value=8.9e-06 Score=62.76 Aligned_cols=29 Identities=31% Similarity=0.355 Sum_probs=26.5
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.+|++++|+|++||||||+++.|++.+..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999998854
No 473
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.95 E-value=7.4e-06 Score=61.08 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=22.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+++|+||||||||||++.|+..+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 4789999999999999999987654
No 474
>PRK08118 topology modulation protein; Reviewed
Probab=97.94 E-value=8.8e-06 Score=62.73 Aligned_cols=26 Identities=42% Similarity=0.634 Sum_probs=23.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.|.|+|++|||||||++.|+..++.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 58999999999999999999887654
No 475
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.94 E-value=7.1e-06 Score=72.12 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=45.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
-++.+.++..|... ..++++ + +.+.+|++++|+|+||+|||||++.|++...+..
T Consensus 129 ~~~r~~v~~~l~tG-i~aID~-l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~ 183 (433)
T PRK07594 129 AMVRQPITQPLMTG-IRAIDS-V-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS 183 (433)
T ss_pred ceeccCHhheeCCC-ceeeee-e-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCE
Confidence 46667777777543 478999 7 9999999999999999999999999998776654
No 476
>KOG3308|consensus
Probab=97.93 E-value=1.2e-05 Score=63.21 Aligned_cols=48 Identities=31% Similarity=0.471 Sum_probs=41.0
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG 103 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~ 103 (199)
--+|||.|.|-||||||++.|...+.... +|++|+||+...+....+.
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~--lIhqDDFyKp~~Ei~v~~~ 51 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGCS--LIHQDDFYKPENEIEVDYN 51 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCCe--eeccccccCchhhhhcccC
Confidence 35899999999999999999999986554 7999999998887766554
No 477
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.93 E-value=7.4e-06 Score=66.03 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=31.4
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~ 75 (199)
.+.++ ++++..++++++|.|||||||||+++.++
T Consensus 18 ~v~~~-~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 18 FIPND-VTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred eEEee-EEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 56788 99999999999999999999999999876
No 478
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.93 E-value=8.8e-06 Score=69.13 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=40.6
Q ss_pred cceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 30 GVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 30 nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
.++..|... ..+++. + +.+.+|++++|+|+||+|||||+++|++...+..
T Consensus 48 ~~~~~l~tG-i~aiD~-l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~ 97 (326)
T cd01136 48 PIDEVLPTG-VRAIDG-L-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADV 97 (326)
T ss_pred cceeEcCCC-cEEEee-e-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCE
Confidence 344445432 468899 7 9999999999999999999999999998877653
No 479
>PRK06217 hypothetical protein; Validated
Probab=97.92 E-value=2.2e-05 Score=61.13 Aligned_cols=36 Identities=36% Similarity=0.649 Sum_probs=28.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 93 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~ 93 (199)
..|.|+|.|||||||+++.|+..++.+ .+..|.++.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~---~~~~D~~~~ 37 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIP---HLDTDDYFW 37 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCc---EEEcCceee
Confidence 358999999999999999999988754 345555543
No 480
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.92 E-value=1.3e-05 Score=59.48 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=28.7
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.+++|.++++.|+.||||||+++.++..++..
T Consensus 18 ~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 18 PLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred hCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 46789999999999999999999999988643
No 481
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.91 E-value=9.6e-06 Score=53.25 Aligned_cols=23 Identities=61% Similarity=0.897 Sum_probs=21.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHc
Q psy9640 56 VIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+++|.|++||||||+++.|...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 482
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.89 E-value=1.1e-05 Score=72.39 Aligned_cols=51 Identities=14% Similarity=0.058 Sum_probs=44.4
Q ss_pred cccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 28 LEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 28 l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+.|++..|... .++++ +++.+..|+.++|+|++|||||||++.|.+.+.+.
T Consensus 187 ~~d~~~v~Gq~--~~~~a-l~laa~~G~~llliG~~GsGKTtLak~L~gllpp~ 237 (506)
T PRK09862 187 QHDLSDVIGQE--QGKRG-LEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDL 237 (506)
T ss_pred ccCeEEEECcH--HHHhh-hheeccCCcEEEEECCCCCcHHHHHHHHhccCCCC
Confidence 45787777654 68888 99999999999999999999999999999988664
No 483
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.88 E-value=1.4e-05 Score=67.21 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=39.6
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeeccc
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMD 89 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d 89 (199)
.++++ +++...++.+++|+|++|||||||+..++..+.. ..+.++..|
T Consensus 22 ~~~~~-~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 22 QLLDR-IMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred HHHHh-CCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 57889 9999999999999999999999999999887643 245555555
No 484
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.88 E-value=1e-05 Score=81.14 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=38.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~ 75 (199)
++..+++..+... +.|++ +++++.+|++++|+|+||||||||+..++
T Consensus 936 l~~~~i~i~~~~~--~~lk~-isl~i~~gei~~itG~nGsGKStL~~~~L 982 (1809)
T PRK00635 936 PVPADITIKNAYQ--HNLKH-IDLSLPRNALTAVTGPSASGKHSLVFDIL 982 (1809)
T ss_pred cccceEEEecccc--ccccc-eeEEecCCcEEEEECCCCCChhHHHHHHH
Confidence 4466777776433 56899 99999999999999999999999887763
No 485
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.88 E-value=1.2e-05 Score=70.91 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=36.7
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
..++++ + +.+.+|++++|+|+||+|||||+++|++...+..
T Consensus 146 ~~vid~-l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~ 186 (438)
T PRK07721 146 VRAIDS-L-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL 186 (438)
T ss_pred hhhhhe-e-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 368899 8 9999999999999999999999999998876643
No 486
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.87 E-value=1.4e-05 Score=57.53 Aligned_cols=29 Identities=41% Similarity=0.464 Sum_probs=25.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
++..+.|+||+||||||+++.|+..+...
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 36789999999999999999999988765
No 487
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.87 E-value=2e-05 Score=66.88 Aligned_cols=41 Identities=34% Similarity=0.435 Sum_probs=32.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccch
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSF 91 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~ 91 (199)
-.+|++++++|||||||||++..|++.+... .+.++..|.+
T Consensus 111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 111 EKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 3579999999999999999999999988643 3444555543
No 488
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.86 E-value=1.7e-05 Score=61.58 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=28.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSM 88 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~ 88 (199)
...+++|+|+||||||||++.|...+... .++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 34589999999999999999999988642 3455543
No 489
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.86 E-value=1.6e-05 Score=61.61 Aligned_cols=28 Identities=39% Similarity=0.496 Sum_probs=24.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+..+++|+|++||||||+++.|+..++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~ 29 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGF 29 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468999999999999999999976653
No 490
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.85 E-value=1.6e-05 Score=61.89 Aligned_cols=33 Identities=33% Similarity=0.324 Sum_probs=28.8
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+....+|.+++|+|++||||||+++.|.+.+..
T Consensus 12 ~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 12 ALNGHRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred HHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345678999999999999999999999998753
No 491
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.84 E-value=2.6e-05 Score=65.06 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=34.2
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcC----CCeeeeecccchh
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFY 92 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~----~~~~~~i~~d~~~ 92 (199)
..++.+++|+||+|+||||++..|+..+. ...++++..|.++
T Consensus 191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35788999999999999999999998762 3567777777653
No 492
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.83 E-value=2e-05 Score=69.30 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=36.9
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
..++++ + +.+.+|++++|.|+||+|||||+++|++...+..
T Consensus 133 ~~~id~-l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~ 173 (422)
T TIGR02546 133 VRAIDG-L-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADV 173 (422)
T ss_pred ceeehh-h-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCE
Confidence 468999 8 9999999999999999999999999998776554
No 493
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.81 E-value=2.2e-05 Score=69.38 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=36.1
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
..+++. + +.+.+|++++|+|+||+|||||+++|++...+.
T Consensus 151 i~~iD~-l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~ 190 (440)
T TIGR01026 151 VRSIDG-L-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD 190 (440)
T ss_pred eeeeee-c-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 468888 7 999999999999999999999999999887654
No 494
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.81 E-value=1.1e-05 Score=70.80 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=34.7
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
..+++. + +.+.+|++++|+|+||+|||||+++|++...+.
T Consensus 150 i~aID~-l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 150 VRAINA-M-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred ceeecc-e-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 357777 5 999999999999999999999999999876554
No 495
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.80 E-value=1.4e-05 Score=67.98 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=32.0
Q ss_pred ccCCCCC--CeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 47 IAPSMVE--PFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 47 vsl~i~~--g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
++..+++ +..++|+|+||||||||++.|++.++.+.
T Consensus 153 i~~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~~~~ 190 (325)
T TIGR01526 153 IPREVRPFFVKTVAILGGESTGKSTLVNKLAAVFNTTS 190 (325)
T ss_pred CCHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 6777778 89999999999999999999999887654
No 496
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.80 E-value=2.1e-05 Score=62.57 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.9
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
...+.++.|+||||||||||++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 458899999999999999999998754
No 497
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.80 E-value=2.1e-05 Score=62.24 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
++.|+||+||||||+++.|++.+...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~ 28 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN 28 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 68999999999999999999888643
No 498
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.80 E-value=1.7e-05 Score=60.81 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=22.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.+++++|+||+|||||++.|.+..
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4899999999999999999998754
No 499
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.78 E-value=1.5e-05 Score=70.28 Aligned_cols=40 Identities=10% Similarity=0.175 Sum_probs=36.0
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
..+++. + +.+.+|++++|+|+||+|||||+++|++...+.
T Consensus 156 i~aID~-l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 156 IRSING-L-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred eeeecc-e-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 478888 7 999999999999999999999999999876654
No 500
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.78 E-value=2.6e-05 Score=60.77 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=23.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
.+.|+|+|||||||+++.|+..++.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 588999999999999999999876543
Done!