Query psy9640
Match_columns 199
No_of_seqs 174 out of 1357
Neff 8.3
Searched_HMMs 29240
Date Sat Aug 17 00:53:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nh6_A ATP-binding cassette SU 99.9 2.6E-27 9E-32 197.9 -0.1 152 24-180 52-250 (306)
2 3fvq_A Fe(3+) IONS import ATP- 99.9 1E-25 3.4E-30 191.7 2.7 149 25-180 4-200 (359)
3 4f4c_A Multidrug resistance pr 99.9 6.8E-26 2.3E-30 219.7 0.3 157 23-182 1074-1279(1321)
4 3rlf_A Maltose/maltodextrin im 99.9 2.9E-25 9.8E-30 190.1 3.7 149 25-180 3-195 (381)
5 2ff7_A Alpha-hemolysin translo 99.9 1.1E-25 3.6E-30 183.0 0.4 153 25-181 7-206 (247)
6 4f4c_A Multidrug resistance pr 99.9 1.3E-25 4.5E-30 217.7 1.1 156 23-182 413-616 (1321)
7 1mv5_A LMRA, multidrug resista 99.9 3.7E-25 1.3E-29 179.3 3.4 150 26-180 2-199 (243)
8 3qf4_A ABC transporter, ATP-bi 99.9 1.9E-25 6.5E-30 201.4 1.1 155 23-181 339-540 (587)
9 3tui_C Methionine import ATP-b 99.9 6.8E-25 2.3E-29 186.9 3.8 155 21-180 20-225 (366)
10 4a82_A Cystic fibrosis transme 99.9 1.4E-25 4.7E-30 202.0 -0.7 156 23-182 337-539 (578)
11 3qf4_B Uncharacterized ABC tra 99.9 7.7E-26 2.6E-30 204.3 -3.2 154 23-181 352-552 (598)
12 3b5x_A Lipid A export ATP-bind 99.9 9.5E-25 3.3E-29 196.6 3.6 154 24-181 340-541 (582)
13 3tif_A Uncharacterized ABC tra 99.9 6.7E-25 2.3E-29 177.0 1.6 150 26-180 2-207 (235)
14 2it1_A 362AA long hypothetical 99.9 2.6E-24 8.8E-29 183.4 4.6 149 25-180 3-195 (362)
15 1v43_A Sugar-binding transport 99.9 2.6E-24 9E-29 183.9 4.4 149 25-180 11-203 (372)
16 3b60_A Lipid A export ATP-bind 99.9 6.4E-25 2.2E-29 197.7 0.2 155 24-182 340-542 (582)
17 3gfo_A Cobalt import ATP-bindi 99.9 1.3E-24 4.6E-29 179.0 2.0 152 25-182 7-207 (275)
18 2yyz_A Sugar ABC transporter, 99.9 1.9E-24 6.6E-29 184.0 3.0 149 25-180 3-195 (359)
19 2ixe_A Antigen peptide transpo 99.9 7.4E-25 2.5E-29 180.3 0.2 155 24-180 15-218 (271)
20 2pcj_A ABC transporter, lipopr 99.9 1.8E-24 6.3E-29 173.2 2.0 147 26-180 5-201 (224)
21 1z47_A CYSA, putative ABC-tran 99.9 2.5E-24 8.4E-29 183.0 2.8 149 25-180 14-207 (355)
22 1oxx_K GLCV, glucose, ABC tran 99.9 2.3E-24 7.8E-29 183.3 2.4 149 25-180 3-202 (353)
23 1g29_1 MALK, maltose transport 99.9 3.3E-24 1.1E-28 183.5 3.2 149 25-180 3-201 (372)
24 2ghi_A Transport protein; mult 99.9 1.3E-24 4.3E-29 177.9 0.5 153 24-182 16-217 (260)
25 3gd7_A Fusion complex of cysti 99.9 1E-24 3.5E-29 187.5 0.0 154 23-181 17-216 (390)
26 4g1u_C Hemin import ATP-bindin 99.9 2.4E-24 8.2E-29 176.7 1.5 145 25-180 11-209 (266)
27 2yl4_A ATP-binding cassette SU 99.9 1.7E-24 5.7E-29 195.4 0.6 153 24-180 339-543 (595)
28 3d31_A Sulfate/molybdate ABC t 99.9 4.1E-24 1.4E-28 181.3 2.6 147 26-180 2-189 (348)
29 2olj_A Amino acid ABC transpor 99.9 4.4E-24 1.5E-28 174.9 1.9 148 25-180 24-220 (263)
30 1g6h_A High-affinity branched- 99.9 1E-23 3.5E-28 172.1 3.4 57 25-84 7-63 (257)
31 1sgw_A Putative ABC transporte 99.9 9.9E-24 3.4E-28 167.9 3.2 148 25-182 10-196 (214)
32 1b0u_A Histidine permease; ABC 99.9 5.3E-24 1.8E-28 174.3 1.1 148 25-180 6-214 (262)
33 1vpl_A ABC transporter, ATP-bi 99.9 1.2E-23 4.1E-28 171.7 3.2 150 23-180 13-207 (256)
34 2pze_A Cystic fibrosis transme 99.9 3.1E-24 1.1E-28 172.4 -1.6 153 25-180 6-191 (229)
35 2cbz_A Multidrug resistance-as 99.9 4.2E-24 1.4E-28 172.5 -0.9 152 25-182 3-192 (237)
36 2nq2_C Hypothetical ABC transp 99.9 1.4E-23 4.6E-28 171.1 1.6 145 26-180 5-190 (253)
37 1ji0_A ABC transporter; ATP bi 99.9 3.4E-23 1.2E-27 167.5 2.2 148 25-180 6-200 (240)
38 2yz2_A Putative ABC transporte 99.9 2.8E-23 9.7E-28 170.3 1.7 147 26-182 3-201 (266)
39 3g5u_A MCG1178, multidrug resi 99.9 1.7E-23 5.8E-28 202.5 -1.2 154 23-180 385-586 (1284)
40 3g5u_A MCG1178, multidrug resi 99.9 7.3E-23 2.5E-27 198.1 2.8 156 23-182 1028-1233(1284)
41 2d2e_A SUFC protein; ABC-ATPas 99.9 7.8E-23 2.7E-27 166.3 2.4 149 26-181 4-205 (250)
42 2onk_A Molybdate/tungstate ABC 99.9 1.1E-22 3.7E-27 164.6 2.7 145 26-180 2-188 (240)
43 2ihy_A ABC transporter, ATP-bi 99.8 6.4E-23 2.2E-27 169.3 0.5 57 25-84 21-77 (279)
44 2pjz_A Hypothetical protein ST 99.8 2.2E-22 7.7E-27 164.8 2.8 144 26-181 2-187 (263)
45 2zu0_C Probable ATP-dependent 99.8 1.8E-22 6E-27 165.7 2.1 63 25-90 20-83 (267)
46 2qi9_C Vitamin B12 import ATP- 99.8 8E-22 2.7E-26 160.3 0.2 138 26-180 5-194 (249)
47 2bbs_A Cystic fibrosis transme 99.8 5.5E-22 1.9E-26 164.6 -1.8 149 24-180 39-220 (290)
48 1yqt_A RNAse L inhibitor; ATP- 99.8 1.9E-19 6.4E-24 160.7 2.8 145 25-180 287-463 (538)
49 3bk7_A ABC transporter ATP-bin 99.7 1.8E-19 6.3E-24 162.7 2.5 145 25-180 357-533 (607)
50 3ozx_A RNAse L inhibitor; ATP 99.7 2.8E-19 9.6E-24 159.6 3.3 146 25-180 269-447 (538)
51 3j16_B RLI1P; ribosome recycli 99.7 4.9E-19 1.7E-23 159.9 2.5 143 29-180 350-529 (608)
52 3bk7_A ABC transporter ATP-bin 99.7 1.1E-18 3.8E-23 157.6 3.0 53 29-84 95-147 (607)
53 1yqt_A RNAse L inhibitor; ATP- 99.7 8.7E-19 3E-23 156.4 2.0 55 26-83 21-76 (538)
54 2v9p_A Replication protein E1; 99.7 9.2E-19 3.1E-23 146.0 1.9 115 25-158 101-216 (305)
55 2iw3_A Elongation factor 3A; a 99.7 1E-18 3.4E-23 164.1 1.1 58 26-84 672-729 (986)
56 3j16_B RLI1P; ribosome recycli 99.7 8E-18 2.7E-22 152.0 3.6 52 29-83 81-132 (608)
57 3aez_A Pantothenate kinase; tr 99.7 1.3E-17 4.3E-22 139.6 3.7 121 23-156 41-193 (312)
58 2iw3_A Elongation factor 3A; a 99.6 1.1E-17 3.6E-22 157.2 0.3 50 25-77 435-484 (986)
59 3ux8_A Excinuclease ABC, A sub 99.6 2.5E-17 8.7E-22 150.4 -0.3 41 30-71 20-61 (670)
60 3ozx_A RNAse L inhibitor; ATP 99.6 1.2E-16 4E-21 142.6 0.7 52 29-84 3-55 (538)
61 3ux8_A Excinuclease ABC, A sub 99.6 1.1E-16 3.9E-21 146.1 0.6 48 27-75 322-369 (670)
62 2npi_A Protein CLP1; CLP1-PCF1 99.6 9.9E-18 3.4E-22 147.0 -9.1 49 25-82 118-166 (460)
63 4gp7_A Metallophosphoesterase; 99.5 9E-16 3.1E-20 117.4 1.3 29 47-75 2-30 (171)
64 2jeo_A Uridine-cytidine kinase 99.5 9.9E-14 3.4E-18 111.6 7.9 101 40-150 12-127 (245)
65 3c8u_A Fructokinase; YP_612366 99.5 6.2E-14 2.1E-18 110.1 5.7 102 51-155 19-128 (208)
66 1z6g_A Guanylate kinase; struc 99.4 6.3E-14 2.1E-18 111.2 4.3 37 41-78 11-47 (218)
67 3b85_A Phosphate starvation-in 99.4 2.9E-14 1E-18 112.6 1.0 35 41-81 14-48 (208)
68 3pih_A Uvrabc system protein A 99.4 1.9E-13 6.6E-18 128.0 3.9 39 32-71 589-627 (916)
69 3asz_A Uridine kinase; cytidin 99.3 1.9E-12 6.5E-17 101.3 7.8 98 51-156 3-110 (211)
70 1odf_A YGR205W, hypothetical 3 99.3 9.2E-13 3.2E-17 109.0 5.8 99 50-153 27-148 (290)
71 2vf7_A UVRA2, excinuclease ABC 99.3 5.8E-14 2E-18 130.5 -1.9 46 25-78 502-548 (842)
72 2f1r_A Molybdopterin-guanine d 99.3 1.5E-13 5E-18 105.5 -0.1 36 55-90 3-40 (171)
73 1htw_A HI0065; nucleotide-bind 99.3 2.5E-13 8.4E-18 102.9 0.7 60 26-90 8-67 (158)
74 2pt7_A CAG-ALFA; ATPase, prote 99.3 1.2E-13 4.1E-18 116.3 -1.8 49 28-82 151-199 (330)
75 3sop_A Neuronal-specific septi 99.3 4.1E-12 1.4E-16 104.0 7.2 28 55-82 3-30 (270)
76 4aby_A DNA repair protein RECN 99.2 1.3E-12 4.5E-17 112.2 2.1 38 41-80 49-86 (415)
77 1ye8_A Protein THEP1, hypothet 99.2 1.7E-12 5.8E-17 100.0 2.5 24 56-79 2-25 (178)
78 2r6f_A Excinuclease ABC subuni 99.2 1.4E-12 4.7E-17 122.2 1.8 34 41-75 638-671 (972)
79 2ygr_A Uvrabc system protein A 99.2 2E-12 6.8E-17 121.5 2.8 34 41-75 656-689 (993)
80 1tq4_A IIGP1, interferon-induc 99.2 1.4E-12 4.9E-17 112.7 -1.4 42 40-82 36-97 (413)
81 1tf7_A KAIC; homohexamer, hexa 99.2 1.9E-11 6.4E-16 108.7 5.4 53 26-81 13-68 (525)
82 3b9q_A Chloroplast SRP recepto 99.2 1.9E-11 6.5E-16 101.6 4.5 38 43-81 90-127 (302)
83 3qf7_A RAD50; ABC-ATPase, ATPa 99.1 5.9E-12 2E-16 107.2 1.3 35 42-78 13-47 (365)
84 1p9r_A General secretion pathw 99.1 1.3E-11 4.5E-16 106.9 2.8 54 25-83 143-196 (418)
85 1rj9_A FTSY, signal recognitio 99.1 5.8E-11 2E-15 98.8 4.7 30 53-82 101-130 (304)
86 2og2_A Putative signal recogni 99.1 4.7E-11 1.6E-15 101.5 3.4 37 44-81 148-184 (359)
87 2dpy_A FLII, flagellum-specifi 99.1 8E-11 2.7E-15 102.5 4.9 63 24-90 130-192 (438)
88 1sq5_A Pantothenate kinase; P- 99.1 1.6E-11 5.4E-16 102.2 0.4 66 23-93 35-123 (308)
89 2qnr_A Septin-2, protein NEDD5 99.0 1.4E-10 4.9E-15 96.2 5.2 40 29-77 2-41 (301)
90 1e69_A Chromosome segregation 99.0 7.9E-11 2.7E-15 98.4 3.4 31 47-78 18-48 (322)
91 2obl_A ESCN; ATPase, hydrolase 99.0 1.2E-10 4.1E-15 98.6 4.2 56 24-82 44-99 (347)
92 3nwj_A ATSK2; P loop, shikimat 99.0 5E-11 1.7E-15 96.5 0.8 55 25-81 17-75 (250)
93 2gza_A Type IV secretion syste 99.0 3.8E-11 1.3E-15 102.1 -0.4 54 27-81 137-202 (361)
94 2eyu_A Twitching motility prot 99.0 1.7E-10 5.9E-15 93.9 2.5 48 25-81 5-52 (261)
95 1zp6_A Hypothetical protein AT 98.9 4.1E-10 1.4E-14 86.3 3.7 29 50-78 5-33 (191)
96 2qm8_A GTPase/ATPase; G protei 98.9 2E-10 6.7E-15 96.8 1.5 53 25-80 29-81 (337)
97 2qag_B Septin-6, protein NEDD5 98.9 2.8E-10 9.7E-15 98.5 2.2 51 23-78 14-66 (427)
98 3tqc_A Pantothenate kinase; bi 98.9 3.8E-10 1.3E-14 94.5 2.4 78 54-132 92-179 (321)
99 3tr0_A Guanylate kinase, GMP k 98.9 1.3E-09 4.3E-14 84.4 4.1 32 48-79 1-32 (205)
100 1znw_A Guanylate kinase, GMP k 98.9 1.2E-09 3.9E-14 85.5 3.9 36 41-79 10-45 (207)
101 2x8a_A Nuclear valosin-contain 98.8 5.2E-10 1.8E-14 91.5 1.2 38 41-81 34-71 (274)
102 3thx_B DNA mismatch repair pro 98.8 1.6E-10 5.6E-15 108.4 -2.5 37 40-77 660-696 (918)
103 3lnc_A Guanylate kinase, GMP k 98.8 9E-10 3.1E-14 87.4 2.0 38 41-79 15-53 (231)
104 1tf7_A KAIC; homohexamer, hexa 98.8 6.6E-10 2.3E-14 98.7 1.1 50 26-80 258-307 (525)
105 3vaa_A Shikimate kinase, SK; s 98.8 3.5E-09 1.2E-13 82.1 4.6 44 38-82 10-53 (199)
106 1xtt_A Probable uracil phospho 98.8 6.5E-09 2.2E-13 82.2 5.9 73 125-198 52-132 (216)
107 3euj_A Chromosome partition pr 98.8 2.1E-09 7.1E-14 94.5 3.1 41 41-83 18-58 (483)
108 2rcn_A Probable GTPase ENGC; Y 98.8 1.4E-09 4.9E-14 92.2 1.8 38 42-81 205-243 (358)
109 3uie_A Adenylyl-sulfate kinase 98.7 2.7E-09 9.3E-14 82.8 2.4 48 29-79 3-50 (200)
110 1pui_A ENGB, probable GTP-bind 98.7 2.1E-09 7E-14 83.3 1.6 47 26-78 4-50 (210)
111 3dmp_A Uracil phosphoribosyltr 98.7 5.8E-09 2E-13 82.5 4.1 71 125-198 60-130 (217)
112 1s96_A Guanylate kinase, GMP k 98.7 7.3E-09 2.5E-13 82.1 4.5 33 48-80 10-42 (219)
113 2yhs_A FTSY, cell division pro 98.7 1.1E-08 3.9E-13 89.9 4.1 38 43-81 283-320 (503)
114 1lw7_A Transcriptional regulat 98.7 1.2E-08 4.1E-13 86.5 4.1 39 43-82 158-198 (365)
115 2ehv_A Hypothetical protein PH 98.7 1.9E-08 6.4E-13 79.8 4.8 46 26-77 7-55 (251)
116 3thx_A DNA mismatch repair pro 98.6 3.9E-09 1.3E-13 99.3 0.8 35 40-75 649-683 (934)
117 3jvv_A Twitching mobility prot 98.6 1.2E-08 4.1E-13 86.6 3.1 52 29-81 92-150 (356)
118 1lvg_A Guanylate kinase, GMP k 98.6 1.2E-08 4.3E-13 79.2 2.9 28 52-79 2-29 (198)
119 4a74_A DNA repair and recombin 98.6 1.5E-08 5E-13 79.5 2.9 32 49-80 20-51 (231)
120 2j41_A Guanylate kinase; GMP, 98.6 2.2E-08 7.6E-13 77.3 3.9 31 50-80 2-32 (207)
121 1bd3_D Uprtase, uracil phospho 98.6 6.1E-08 2.1E-12 77.9 6.2 73 125-198 85-157 (243)
122 2ehj_A Uracil phosphoribosyltr 98.6 3.5E-08 1.2E-12 77.6 4.6 73 125-198 52-124 (208)
123 1kgd_A CASK, peripheral plasma 98.6 3.7E-08 1.3E-12 75.2 4.5 29 52-80 3-31 (180)
124 2qag_C Septin-7; cell cycle, c 98.6 1.3E-08 4.6E-13 88.0 2.1 47 24-79 10-56 (418)
125 1v9s_A Uracil phosphoribosyltr 98.6 2.9E-08 1E-12 78.1 3.6 73 125-198 52-124 (208)
126 1cr0_A DNA primase/helicase; R 98.6 2.3E-08 8E-13 82.0 3.1 40 41-81 23-62 (296)
127 3szr_A Interferon-induced GTP- 98.5 9.6E-09 3.3E-13 92.8 -0.0 62 25-90 10-81 (608)
128 2o8b_B DNA mismatch repair pro 98.5 3.5E-08 1.2E-12 93.8 3.6 52 25-79 750-813 (1022)
129 3a00_A Guanylate kinase, GMP k 98.5 3.9E-08 1.3E-12 75.4 3.1 26 54-79 1-26 (186)
130 3ice_A Transcription terminati 98.5 6.8E-08 2.3E-12 82.6 4.8 54 23-78 131-198 (422)
131 2e55_A Uracil phosphoribosyltr 98.5 9E-08 3.1E-12 75.3 5.0 72 125-198 51-122 (208)
132 1ixz_A ATP-dependent metallopr 98.5 3E-08 1E-12 79.5 1.7 51 26-81 26-76 (254)
133 3kta_A Chromosome segregation 98.5 8.8E-08 3E-12 72.8 4.1 35 44-80 18-52 (182)
134 2qt1_A Nicotinamide riboside k 98.5 1.2E-07 4.2E-12 73.6 4.8 46 47-94 14-59 (207)
135 1iy2_A ATP-dependent metallopr 98.5 3.9E-08 1.3E-12 80.0 1.7 51 26-81 50-100 (278)
136 1udx_A The GTP-binding protein 98.5 4.2E-09 1.4E-13 91.1 -4.3 34 43-77 147-180 (416)
137 1o5o_A Uracil phosphoribosyltr 98.5 1.7E-07 5.8E-12 74.3 5.2 73 125-198 65-137 (221)
138 4eun_A Thermoresistant glucoki 98.4 1E-07 3.6E-12 73.8 3.7 32 48-79 23-54 (200)
139 3tau_A Guanylate kinase, GMP k 98.4 1.3E-07 4.6E-12 73.8 4.4 29 52-80 6-34 (208)
140 2ewv_A Twitching motility prot 98.4 6.7E-08 2.3E-12 82.3 2.4 31 51-81 133-163 (372)
141 2i3b_A HCR-ntpase, human cance 98.4 1E-07 3.4E-12 73.9 3.0 26 54-79 1-26 (189)
142 1rz3_A Hypothetical protein rb 98.4 3.6E-07 1.2E-11 70.8 5.9 46 48-93 16-63 (201)
143 3hr8_A Protein RECA; alpha and 98.4 1.1E-07 3.7E-12 80.6 3.1 135 41-178 47-197 (356)
144 1kag_A SKI, shikimate kinase I 98.4 1.8E-07 6.1E-12 70.3 3.8 29 53-81 3-31 (173)
145 2w0m_A SSO2452; RECA, SSPF, un 98.4 1.2E-07 4.3E-12 74.0 2.7 38 41-79 10-48 (235)
146 3e70_C DPA, signal recognition 98.4 1.7E-07 5.9E-12 78.6 3.6 32 50-81 125-156 (328)
147 1svm_A Large T antigen; AAA+ f 98.4 1.3E-07 4.5E-12 80.7 2.5 40 40-80 156-195 (377)
148 1knq_A Gluconate kinase; ALFA/ 98.4 3.4E-07 1.2E-11 69.0 4.6 29 52-80 6-34 (175)
149 2oap_1 GSPE-2, type II secreti 98.3 5.3E-08 1.8E-12 86.3 -0.1 40 41-81 248-287 (511)
150 3ney_A 55 kDa erythrocyte memb 98.3 3.4E-07 1.2E-11 71.4 4.3 32 48-79 13-44 (197)
151 4e22_A Cytidylate kinase; P-lo 98.3 3.4E-07 1.2E-11 73.7 4.2 30 50-79 23-52 (252)
152 3ec2_A DNA replication protein 98.3 2.6E-07 8.9E-12 70.1 3.1 32 48-79 32-63 (180)
153 1wb9_A DNA mismatch repair pro 98.3 2.8E-07 9.6E-12 85.6 3.9 37 40-78 595-631 (800)
154 1ewq_A DNA mismatch repair pro 98.3 2.6E-07 9E-12 85.4 3.7 51 24-78 549-600 (765)
155 1in4_A RUVB, holliday junction 98.3 5.7E-08 1.9E-12 81.4 -1.0 55 23-80 16-77 (334)
156 2vp4_A Deoxynucleoside kinase; 98.3 2.5E-07 8.4E-12 73.4 2.7 31 47-77 13-43 (230)
157 2bdt_A BH3686; alpha-beta prot 98.3 3.6E-07 1.2E-11 69.8 3.4 25 54-78 2-26 (189)
158 1u0l_A Probable GTPase ENGC; p 98.2 1.8E-07 6.2E-12 77.3 0.9 35 49-83 164-198 (301)
159 1cke_A CK, MSSA, protein (cyti 98.2 7E-07 2.4E-11 69.9 4.1 28 53-80 4-31 (227)
160 1qhl_A Protein (cell division 98.2 2.7E-08 9.1E-13 79.4 -4.4 46 26-82 10-55 (227)
161 2bbw_A Adenylate kinase 4, AK4 98.2 8.3E-07 2.8E-11 70.8 3.9 28 52-79 25-52 (246)
162 2o5v_A DNA replication and rep 98.2 1E-06 3.4E-11 74.8 4.2 34 41-76 15-48 (359)
163 1ls1_A Signal recognition part 98.2 6.4E-07 2.2E-11 73.9 2.9 48 26-80 77-124 (295)
164 2p67_A LAO/AO transport system 98.2 3.4E-07 1.2E-11 77.0 1.1 52 25-79 30-81 (341)
165 1t9h_A YLOQ, probable GTPase E 98.2 1.8E-07 6.3E-12 77.7 -0.8 33 49-81 168-200 (307)
166 1w1w_A Structural maintenance 98.2 9.2E-07 3.1E-11 76.4 3.6 47 25-80 6-52 (430)
167 1zu4_A FTSY; GTPase, signal re 98.2 1.5E-06 5.1E-11 72.6 4.8 36 44-80 96-131 (320)
168 2qor_A Guanylate kinase; phosp 98.2 1.1E-06 3.9E-11 68.1 3.6 31 49-79 7-37 (204)
169 2cvh_A DNA repair and recombin 98.1 9.9E-07 3.4E-11 68.5 2.9 35 41-76 7-42 (220)
170 2kjq_A DNAA-related protein; s 98.1 1.2E-06 3.9E-11 65.2 3.1 28 53-80 35-62 (149)
171 3cr8_A Sulfate adenylyltranfer 98.1 8.9E-07 3E-11 79.1 2.4 35 48-82 363-397 (552)
172 2pez_A Bifunctional 3'-phospho 98.1 2E-06 6.7E-11 65.1 4.0 27 52-78 3-29 (179)
173 4eaq_A DTMP kinase, thymidylat 98.1 2.3E-06 7.8E-11 68.0 4.5 37 43-80 13-52 (229)
174 1vma_A Cell division protein F 98.1 2.4E-06 8.3E-11 70.9 4.6 34 47-80 97-130 (306)
175 2yv5_A YJEQ protein; hydrolase 98.1 1.1E-06 3.7E-11 72.7 2.4 31 50-81 161-191 (302)
176 1y63_A LMAJ004144AAA protein; 98.1 2.7E-06 9.2E-11 64.9 4.3 33 47-79 3-36 (184)
177 1pzn_A RAD51, DNA repair and r 98.1 1.2E-06 4E-11 74.0 2.3 38 41-78 118-155 (349)
178 1n0w_A DNA repair protein RAD5 98.0 2.1E-06 7.2E-11 67.6 3.0 37 41-77 11-47 (243)
179 1i5e_A Uracil phosphoribosyltr 98.0 5.3E-06 1.8E-10 65.1 5.3 73 125-198 53-125 (209)
180 3m6a_A ATP-dependent protease 98.0 1.2E-06 4E-11 78.1 1.5 53 27-83 85-137 (543)
181 1nij_A Hypothetical protein YJ 98.0 4E-06 1.4E-10 69.7 4.4 25 54-78 4-28 (318)
182 3t61_A Gluconokinase; PSI-biol 98.0 4.4E-06 1.5E-10 64.4 4.1 28 54-81 18-45 (202)
183 1jjv_A Dephospho-COA kinase; P 98.0 4.1E-06 1.4E-10 64.7 3.9 25 55-80 3-27 (206)
184 3cm0_A Adenylate kinase; ATP-b 98.0 4.1E-06 1.4E-10 63.4 3.8 29 52-80 2-30 (186)
185 1a7j_A Phosphoribulokinase; tr 98.0 2.8E-06 9.7E-11 69.8 3.0 41 53-93 4-46 (290)
186 1uj2_A Uridine-cytidine kinase 98.0 7.1E-06 2.4E-10 65.7 5.0 44 51-94 19-69 (252)
187 1qhx_A CPT, protein (chloramph 97.9 7.2E-06 2.5E-10 61.6 4.5 29 53-81 2-30 (178)
188 2if2_A Dephospho-COA kinase; a 97.9 4.8E-06 1.6E-10 64.1 3.6 23 56-79 3-25 (204)
189 2yvu_A Probable adenylyl-sulfa 97.9 7.1E-06 2.4E-10 62.4 4.5 32 49-80 8-39 (186)
190 3kb2_A SPBC2 prophage-derived 97.9 7E-06 2.4E-10 61.1 4.3 26 56-81 3-28 (173)
191 1nlf_A Regulatory protein REPA 97.9 3.5E-06 1.2E-10 68.4 2.9 30 50-79 26-55 (279)
192 2dhr_A FTSH; AAA+ protein, hex 97.9 3.7E-06 1.3E-10 74.2 3.2 51 26-81 41-91 (499)
193 1m7g_A Adenylylsulfate kinase; 97.9 7.5E-06 2.6E-10 63.7 4.1 32 48-79 19-50 (211)
194 2rhm_A Putative kinase; P-loop 97.9 1.2E-05 4E-10 61.1 5.0 31 51-81 2-32 (193)
195 3k1j_A LON protease, ATP-depen 97.9 2.3E-06 7.9E-11 77.1 0.8 44 41-85 48-91 (604)
196 1vht_A Dephospho-COA kinase; s 97.9 1.2E-05 4.3E-10 62.5 4.7 28 52-80 2-29 (218)
197 3iij_A Coilin-interacting nucl 97.8 1E-05 3.5E-10 61.1 3.8 32 49-80 6-37 (180)
198 2ius_A DNA translocase FTSK; n 97.8 1.7E-05 5.8E-10 70.1 5.7 30 47-76 160-189 (512)
199 2px0_A Flagellar biosynthesis 97.8 9.3E-06 3.2E-10 67.0 3.7 40 52-91 103-145 (296)
200 1kht_A Adenylate kinase; phosp 97.8 1E-05 3.5E-10 61.2 3.6 27 53-79 2-28 (192)
201 1q3t_A Cytidylate kinase; nucl 97.8 1.2E-05 4.3E-10 63.5 4.0 32 49-80 11-42 (236)
202 3trf_A Shikimate kinase, SK; a 97.8 1.6E-05 5.6E-10 60.0 4.5 29 53-81 4-32 (185)
203 3t34_A Dynamin-related protein 97.8 1E-05 3.6E-10 68.1 3.6 46 28-77 11-57 (360)
204 2v54_A DTMP kinase, thymidylat 97.8 1.4E-05 4.7E-10 61.3 4.0 27 52-78 2-28 (204)
205 3r20_A Cytidylate kinase; stru 97.8 1.2E-05 4.3E-10 64.1 3.7 39 53-94 8-46 (233)
206 1f2t_A RAD50 ABC-ATPase; DNA d 97.8 1.2E-05 4E-10 59.6 3.3 30 48-78 18-47 (149)
207 2c95_A Adenylate kinase 1; tra 97.8 1.5E-05 5.1E-10 60.6 3.9 30 51-80 6-35 (196)
208 1oix_A RAS-related protein RAB 97.8 1.2E-05 4.2E-10 61.3 3.4 27 54-80 29-55 (191)
209 3d3q_A TRNA delta(2)-isopenten 97.8 2.2E-05 7.4E-10 66.0 5.0 34 55-91 8-41 (340)
210 2jaq_A Deoxyguanosine kinase; 97.8 1.5E-05 5.1E-10 60.9 3.7 25 56-80 2-26 (205)
211 1uf9_A TT1252 protein; P-loop, 97.8 1.8E-05 6E-10 60.6 4.0 25 53-77 7-31 (203)
212 2plr_A DTMP kinase, probable t 97.8 1.8E-05 6.2E-10 60.8 4.1 28 53-80 3-30 (213)
213 2p5t_B PEZT; postsegregational 97.8 1.4E-05 4.6E-10 64.2 3.5 30 50-79 28-57 (253)
214 2ffh_A Protein (FFH); SRP54, s 97.8 1.2E-05 4E-10 69.6 3.2 49 26-81 77-125 (425)
215 2wwf_A Thymidilate kinase, put 97.7 1.8E-05 6E-10 61.1 3.8 29 51-79 7-35 (212)
216 2ze6_A Isopentenyl transferase 97.7 2.4E-05 8.3E-10 62.8 4.6 34 55-91 2-35 (253)
217 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 1.7E-05 5.8E-10 68.0 3.9 27 50-76 16-42 (392)
218 2vli_A Antibiotic resistance p 97.7 1.8E-05 6.1E-10 59.6 3.5 31 52-82 3-33 (183)
219 1tev_A UMP-CMP kinase; ploop, 97.7 2.2E-05 7.4E-10 59.5 4.0 28 53-80 2-29 (196)
220 3lw7_A Adenylate kinase relate 97.7 1.9E-05 6.6E-10 58.4 3.6 26 55-81 2-27 (179)
221 2f9l_A RAB11B, member RAS onco 97.7 1.8E-05 6E-10 60.6 3.5 24 55-78 6-29 (199)
222 2ga8_A Hypothetical 39.9 kDa p 97.7 8.2E-06 2.8E-10 69.0 1.6 38 41-79 10-49 (359)
223 1nn5_A Similar to deoxythymidy 97.7 2.1E-05 7E-10 60.7 3.8 29 51-79 6-34 (215)
224 1via_A Shikimate kinase; struc 97.7 1.9E-05 6.6E-10 59.3 3.5 26 56-81 6-31 (175)
225 1np6_A Molybdopterin-guanine d 97.7 2E-05 6.8E-10 60.1 3.5 26 54-79 6-31 (174)
226 2dr3_A UPF0273 protein PH0284; 97.7 1.4E-05 4.7E-10 62.9 2.6 37 41-77 10-46 (247)
227 2gj8_A MNME, tRNA modification 97.7 1.8E-05 6.2E-10 59.3 3.2 27 52-78 2-28 (172)
228 1lv7_A FTSH; alpha/beta domain 97.7 3.6E-05 1.2E-09 61.4 4.9 38 42-82 36-73 (257)
229 3ake_A Cytidylate kinase; CMP 97.7 3.2E-05 1.1E-09 59.3 4.4 26 56-81 4-29 (208)
230 1f6b_A SAR1; gtpases, N-termin 97.7 1.2E-05 4.2E-10 61.7 2.0 42 32-76 6-47 (198)
231 1gtv_A TMK, thymidylate kinase 97.7 9.8E-06 3.4E-10 62.6 1.3 25 56-80 2-26 (214)
232 1ukz_A Uridylate kinase; trans 97.7 3.9E-05 1.3E-09 58.9 4.7 31 50-80 11-41 (203)
233 1ly1_A Polynucleotide kinase; 97.7 2.9E-05 9.9E-10 58.1 3.8 22 55-76 3-24 (181)
234 1gvn_B Zeta; postsegregational 97.7 2.8E-05 9.5E-10 63.7 4.0 30 50-79 29-58 (287)
235 2bwj_A Adenylate kinase 5; pho 97.7 2.8E-05 9.6E-10 59.2 3.7 30 51-80 9-38 (199)
236 1ex7_A Guanylate kinase; subst 97.6 3.8E-05 1.3E-09 59.2 4.2 24 56-79 3-26 (186)
237 2www_A Methylmalonic aciduria 97.6 3.2E-05 1.1E-09 65.1 4.1 28 52-79 72-99 (349)
238 3lda_A DNA repair protein RAD5 97.6 1.9E-05 6.5E-10 67.8 2.7 35 41-75 165-199 (400)
239 2cdn_A Adenylate kinase; phosp 97.6 4.8E-05 1.6E-09 58.4 4.7 31 51-81 17-47 (201)
240 1aky_A Adenylate kinase; ATP:A 97.6 3.5E-05 1.2E-09 60.1 3.9 29 52-80 2-30 (220)
241 1zuh_A Shikimate kinase; alpha 97.6 4.6E-05 1.6E-09 56.8 4.4 28 55-82 8-35 (168)
242 2iyv_A Shikimate kinase, SK; t 97.6 3.4E-05 1.2E-09 58.3 3.6 34 55-91 3-36 (184)
243 1nks_A Adenylate kinase; therm 97.6 3.5E-05 1.2E-09 58.2 3.6 25 55-79 2-26 (194)
244 1zd8_A GTP:AMP phosphotransfer 97.6 3.5E-05 1.2E-09 60.4 3.8 29 52-80 5-33 (227)
245 1sxj_C Activator 1 40 kDa subu 97.6 8.4E-06 2.9E-10 68.0 -0.0 52 26-80 19-72 (340)
246 1qf9_A UMP/CMP kinase, protein 97.6 5.3E-05 1.8E-09 57.1 4.5 28 53-80 5-32 (194)
247 3tlx_A Adenylate kinase 2; str 97.6 4.6E-05 1.6E-09 60.7 4.3 30 51-80 26-55 (243)
248 3fb4_A Adenylate kinase; psych 97.6 4.9E-05 1.7E-09 58.9 4.2 26 56-81 2-27 (216)
249 2z0h_A DTMP kinase, thymidylat 97.6 3.8E-05 1.3E-09 58.3 3.5 23 56-78 2-24 (197)
250 1j8m_F SRP54, signal recogniti 97.6 4.5E-05 1.5E-09 62.9 4.1 49 26-79 75-123 (297)
251 1ega_A Protein (GTP-binding pr 97.6 2.8E-05 9.7E-10 64.0 2.9 28 50-77 4-31 (301)
252 1zak_A Adenylate kinase; ATP:A 97.6 3.8E-05 1.3E-09 60.0 3.4 28 53-80 4-31 (222)
253 1xjc_A MOBB protein homolog; s 97.6 4.4E-05 1.5E-09 57.9 3.5 34 55-88 5-40 (169)
254 2vf7_A UVRA2, excinuclease ABC 97.6 1.9E-05 6.5E-10 73.7 1.7 31 41-72 24-54 (842)
255 2grj_A Dephospho-COA kinase; T 97.6 5.4E-05 1.9E-09 58.4 4.0 37 53-92 11-47 (192)
256 3dl0_A Adenylate kinase; phosp 97.6 6.1E-05 2.1E-09 58.4 4.3 26 56-81 2-27 (216)
257 1e6c_A Shikimate kinase; phosp 97.6 4E-05 1.4E-09 57.1 3.1 27 55-81 3-29 (173)
258 2pt5_A Shikimate kinase, SK; a 97.5 6.5E-05 2.2E-09 55.7 4.2 26 56-81 2-27 (168)
259 1m2o_B GTP-binding protein SAR 97.5 4.8E-05 1.6E-09 57.8 3.5 35 41-77 12-46 (190)
260 1ypw_A Transitional endoplasmi 97.5 6.6E-05 2.2E-09 69.9 4.9 34 48-81 232-265 (806)
261 3cf0_A Transitional endoplasmi 97.5 5.2E-05 1.8E-09 62.2 3.7 33 48-80 43-75 (301)
262 2pbr_A DTMP kinase, thymidylat 97.5 5.7E-05 1.9E-09 57.1 3.5 23 56-78 2-24 (195)
263 3pih_A Uvrabc system protein A 97.5 2.7E-05 9.4E-10 73.2 1.9 30 41-71 12-41 (916)
264 2qag_A Septin-2, protein NEDD5 97.5 1.2E-05 4E-10 68.1 -0.6 45 24-77 16-60 (361)
265 2wji_A Ferrous iron transport 97.5 4.6E-05 1.6E-09 56.4 2.7 23 55-77 4-26 (165)
266 4ad8_A DNA repair protein RECN 97.5 2.2E-05 7.6E-10 69.3 1.0 35 42-78 50-84 (517)
267 3qks_A DNA double-strand break 97.5 6.8E-05 2.3E-09 58.2 3.3 25 54-78 23-47 (203)
268 2ygr_A Uvrabc system protein A 97.5 3.1E-05 1.1E-09 73.1 1.6 30 41-71 34-63 (993)
269 3exa_A TRNA delta(2)-isopenten 97.4 0.00014 4.9E-09 60.4 5.4 36 53-91 2-37 (322)
270 2r6f_A Excinuclease ABC subuni 97.4 3.2E-05 1.1E-09 72.8 1.6 30 41-71 32-61 (972)
271 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 8.9E-05 3.1E-09 59.6 4.0 27 52-78 2-28 (260)
272 2f6r_A COA synthase, bifunctio 97.4 8.2E-05 2.8E-09 60.6 3.8 27 52-79 73-99 (281)
273 2ce7_A Cell division protein F 97.4 5.1E-05 1.7E-09 66.6 2.2 39 41-82 39-77 (476)
274 2zej_A Dardarin, leucine-rich 97.4 6E-05 2.1E-09 56.8 2.2 22 56-77 4-25 (184)
275 3a8t_A Adenylate isopentenyltr 97.4 0.00015 5.3E-09 60.8 4.7 37 52-91 38-74 (339)
276 3be4_A Adenylate kinase; malar 97.4 0.0001 3.6E-09 57.4 3.5 28 53-80 4-31 (217)
277 2wjg_A FEOB, ferrous iron tran 97.4 9.1E-05 3.1E-09 55.6 3.0 24 54-77 7-30 (188)
278 2h92_A Cytidylate kinase; ross 97.4 0.00012 4.1E-09 56.8 3.7 27 54-80 3-29 (219)
279 3umf_A Adenylate kinase; rossm 97.4 0.00018 6.3E-09 56.6 4.7 34 48-81 23-56 (217)
280 3crm_A TRNA delta(2)-isopenten 97.3 0.00019 6.6E-09 59.8 5.0 34 55-91 6-39 (323)
281 2xb4_A Adenylate kinase; ATP-b 97.3 0.00014 4.7E-09 57.1 3.7 25 56-80 2-26 (223)
282 1ak2_A Adenylate kinase isoenz 97.3 0.00016 5.6E-09 56.9 4.0 29 52-80 14-42 (233)
283 1e4v_A Adenylate kinase; trans 97.3 0.00019 6.4E-09 55.7 4.3 25 56-80 2-26 (214)
284 4b4t_K 26S protease regulatory 97.3 0.00033 1.1E-08 60.6 6.2 35 49-83 201-235 (428)
285 3lv8_A DTMP kinase, thymidylat 97.3 0.00015 5.1E-09 57.9 3.6 30 50-79 23-52 (236)
286 4b4t_J 26S protease regulatory 97.3 0.00035 1.2E-08 59.9 6.1 34 50-83 178-211 (405)
287 4b4t_L 26S protease subunit RP 97.3 0.00036 1.2E-08 60.5 6.2 35 49-83 210-244 (437)
288 4b4t_I 26S protease regulatory 97.3 0.00041 1.4E-08 60.0 6.5 35 49-83 211-245 (437)
289 3eph_A TRNA isopentenyltransfe 97.3 0.00027 9.1E-09 60.7 5.2 34 54-90 2-35 (409)
290 3qkt_A DNA double-strand break 97.3 0.00019 6.5E-09 60.0 4.0 28 48-76 18-45 (339)
291 3v9p_A DTMP kinase, thymidylat 97.3 0.00014 5E-09 57.6 3.2 30 50-79 21-50 (227)
292 4b4t_H 26S protease regulatory 97.3 0.00028 9.7E-09 61.5 5.2 35 48-82 237-271 (467)
293 2ocp_A DGK, deoxyguanosine kin 97.2 0.00021 7.3E-09 56.4 4.1 27 53-79 1-27 (241)
294 4edh_A DTMP kinase, thymidylat 97.2 0.00021 7.3E-09 56.0 4.0 29 52-80 4-32 (213)
295 1sxj_E Activator 1 40 kDa subu 97.2 0.00014 4.9E-09 60.3 2.9 25 56-80 38-63 (354)
296 3kl4_A SRP54, signal recogniti 97.2 0.00021 7.1E-09 62.0 3.8 27 53-79 96-122 (433)
297 3zvl_A Bifunctional polynucleo 97.2 0.00021 7E-09 61.5 3.8 32 48-79 252-283 (416)
298 2dy1_A Elongation factor G; tr 97.2 0.00022 7.6E-09 64.9 4.1 32 48-79 3-34 (665)
299 4ag6_A VIRB4 ATPase, type IV s 97.2 0.00026 8.9E-09 60.1 4.2 26 53-78 34-59 (392)
300 3lxx_A GTPase IMAP family memb 97.2 0.00019 6.6E-09 56.5 3.0 26 53-78 28-53 (239)
301 3foz_A TRNA delta(2)-isopenten 97.2 0.00034 1.2E-08 58.0 4.6 35 53-90 9-43 (316)
302 1ltq_A Polynucleotide kinase; 97.2 0.00025 8.5E-09 57.7 3.7 24 55-78 3-26 (301)
303 3tmk_A Thymidylate kinase; pho 97.2 0.00031 1.1E-08 55.3 4.0 29 52-80 3-31 (216)
304 3ld9_A DTMP kinase, thymidylat 97.2 0.00032 1.1E-08 55.5 4.1 30 51-80 18-47 (223)
305 2r6a_A DNAB helicase, replicat 97.1 0.00017 5.8E-09 62.7 2.7 37 41-78 191-227 (454)
306 2ged_A SR-beta, signal recogni 97.1 0.00032 1.1E-08 52.8 3.9 27 52-78 46-72 (193)
307 4tmk_A Protein (thymidylate ki 97.1 0.0003 1E-08 55.1 3.7 27 53-79 2-28 (213)
308 1z2a_A RAS-related protein RAB 97.1 0.00031 1.1E-08 51.2 3.5 24 55-78 6-29 (168)
309 2lkc_A Translation initiation 97.1 0.0003 1E-08 52.0 3.3 26 52-77 6-31 (178)
310 2qmh_A HPR kinase/phosphorylas 97.1 0.00032 1.1E-08 54.6 3.6 26 53-78 33-58 (205)
311 4b4t_M 26S protease regulatory 97.1 0.00037 1.3E-08 60.4 4.3 34 49-82 210-243 (434)
312 2qz4_A Paraplegin; AAA+, SPG7, 97.1 0.00056 1.9E-08 54.1 5.1 33 50-82 35-67 (262)
313 2zr9_A Protein RECA, recombina 97.1 0.00023 7.7E-09 60.0 2.9 38 41-78 47-85 (349)
314 2ce2_X GTPase HRAS; signaling 97.1 0.00033 1.1E-08 50.8 3.4 24 55-78 4-27 (166)
315 1upt_A ARL1, ADP-ribosylation 97.1 0.00044 1.5E-08 50.7 4.1 27 52-78 5-31 (171)
316 3b9p_A CG5977-PA, isoform A; A 97.1 0.00046 1.6E-08 55.9 4.6 30 52-81 52-81 (297)
317 2dyk_A GTP-binding protein; GT 97.1 0.00036 1.2E-08 50.6 3.5 23 56-78 3-25 (161)
318 1jbk_A CLPB protein; beta barr 97.1 0.0004 1.4E-08 51.6 3.8 27 52-78 41-67 (195)
319 1mky_A Probable GTP-binding pr 97.1 0.0003 1E-08 60.7 3.5 25 54-78 180-204 (439)
320 1kao_A RAP2A; GTP-binding prot 97.1 0.00039 1.3E-08 50.5 3.6 25 54-78 3-27 (167)
321 1v5w_A DMC1, meiotic recombina 97.1 0.0004 1.4E-08 58.2 4.1 36 42-77 110-145 (343)
322 3k53_A Ferrous iron transport 97.1 0.00026 8.9E-09 57.0 2.9 24 55-78 4-27 (271)
323 1p5z_B DCK, deoxycytidine kina 97.1 0.00017 5.7E-09 57.9 1.7 29 51-79 21-49 (263)
324 3bos_A Putative DNA replicatio 97.1 0.00039 1.3E-08 53.9 3.7 27 53-79 51-77 (242)
325 4fcw_A Chaperone protein CLPB; 97.1 0.00035 1.2E-08 56.8 3.6 28 53-80 46-73 (311)
326 3h4m_A Proteasome-activating n 97.0 0.00046 1.6E-08 55.5 4.2 32 51-82 48-79 (285)
327 1u8z_A RAS-related protein RAL 97.0 0.0004 1.4E-08 50.5 3.5 24 55-78 5-28 (168)
328 1z08_A RAS-related protein RAB 97.0 0.00042 1.4E-08 50.7 3.5 24 55-78 7-30 (170)
329 3sr0_A Adenylate kinase; phosp 97.0 0.00048 1.7E-08 53.7 4.0 27 56-82 2-28 (206)
330 2ohf_A Protein OLA1, GTP-bindi 97.0 0.00026 9E-09 60.6 2.6 28 50-77 18-45 (396)
331 3clv_A RAB5 protein, putative; 97.0 0.00054 1.8E-08 51.4 4.1 26 53-78 6-31 (208)
332 1z0j_A RAB-22, RAS-related pro 97.0 0.00044 1.5E-08 50.5 3.5 24 55-78 7-30 (170)
333 1g16_A RAS-related protein SEC 97.0 0.00042 1.4E-08 50.6 3.4 24 55-78 4-27 (170)
334 1ek0_A Protein (GTP-binding pr 97.0 0.00044 1.5E-08 50.4 3.5 24 55-78 4-27 (170)
335 1c1y_A RAS-related protein RAP 97.0 0.00045 1.5E-08 50.3 3.5 23 55-77 4-26 (167)
336 1fnn_A CDC6P, cell division co 97.0 0.00058 2E-08 57.0 4.6 30 52-81 40-71 (389)
337 1ky3_A GTP-binding protein YPT 97.0 0.00047 1.6E-08 50.9 3.6 26 53-78 7-32 (182)
338 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00046 1.6E-08 50.9 3.5 24 55-78 8-31 (177)
339 2fn4_A P23, RAS-related protei 97.0 0.0005 1.7E-08 50.8 3.6 25 53-77 8-32 (181)
340 2erx_A GTP-binding protein DI- 97.0 0.00041 1.4E-08 50.7 3.1 24 54-77 3-26 (172)
341 3fdi_A Uncharacterized protein 96.9 0.00074 2.5E-08 52.3 4.4 29 54-82 6-34 (201)
342 1g8f_A Sulfate adenylyltransfe 96.9 0.00049 1.7E-08 60.8 3.7 30 51-80 392-421 (511)
343 1r2q_A RAS-related protein RAB 96.9 0.00055 1.9E-08 49.9 3.5 23 55-77 7-29 (170)
344 2qtf_A Protein HFLX, GTP-bindi 96.9 0.00034 1.1E-08 59.2 2.5 26 53-78 177-203 (364)
345 1ypw_A Transitional endoplasmi 96.9 0.00032 1.1E-08 65.2 2.5 35 47-81 504-538 (806)
346 2nzj_A GTP-binding protein REM 96.9 0.00047 1.6E-08 50.7 3.0 25 54-78 4-28 (175)
347 2qby_A CDC6 homolog 1, cell di 96.9 0.00045 1.6E-08 57.4 3.2 27 52-78 43-69 (386)
348 3q85_A GTP-binding protein REM 96.9 0.00042 1.4E-08 50.7 2.7 21 56-76 4-24 (169)
349 3bc1_A RAS-related protein RAB 96.9 0.00057 2E-08 51.0 3.5 25 54-78 11-35 (195)
350 4dsu_A GTPase KRAS, isoform 2B 96.9 0.00059 2E-08 50.8 3.5 24 55-78 5-28 (189)
351 2wsm_A Hydrogenase expression/ 96.9 0.00056 1.9E-08 52.8 3.4 27 53-79 29-55 (221)
352 3pqc_A Probable GTP-binding pr 96.9 0.00042 1.4E-08 51.9 2.7 26 53-78 22-47 (195)
353 3ihw_A Centg3; RAS, centaurin, 96.9 0.00061 2.1E-08 51.3 3.5 26 53-78 19-44 (184)
354 2oil_A CATX-8, RAS-related pro 96.9 0.0006 2.1E-08 51.3 3.5 27 52-78 23-49 (193)
355 1svi_A GTP-binding protein YSX 96.9 0.00058 2E-08 51.4 3.4 26 52-77 21-46 (195)
356 2w58_A DNAI, primosome compone 96.9 0.00062 2.1E-08 52.0 3.6 25 55-79 55-79 (202)
357 1r8s_A ADP-ribosylation factor 96.9 0.00063 2.2E-08 49.5 3.5 23 56-78 2-24 (164)
358 2y8e_A RAB-protein 6, GH09086P 96.9 0.0006 2E-08 50.2 3.4 23 55-77 15-37 (179)
359 3con_A GTPase NRAS; structural 96.9 0.00064 2.2E-08 51.0 3.5 26 53-78 20-45 (190)
360 3bwd_D RAC-like GTP-binding pr 96.9 0.00071 2.4E-08 50.1 3.7 27 52-78 6-32 (182)
361 2p65_A Hypothetical protein PF 96.9 0.00054 1.8E-08 50.9 3.0 27 52-78 41-67 (187)
362 2a9k_A RAS-related protein RAL 96.9 0.00067 2.3E-08 50.3 3.5 26 53-78 17-42 (187)
363 2g6b_A RAS-related protein RAB 96.9 0.00067 2.3E-08 50.1 3.5 26 53-78 9-34 (180)
364 2r62_A Cell division protease 96.9 0.00034 1.2E-08 55.8 1.9 33 47-81 39-71 (268)
365 1z0f_A RAB14, member RAS oncog 96.9 0.0007 2.4E-08 49.9 3.5 25 54-78 15-39 (179)
366 2efe_B Small GTP-binding prote 96.8 0.00074 2.5E-08 50.0 3.5 24 55-78 13-36 (181)
367 3lxw_A GTPase IMAP family memb 96.8 0.00057 2E-08 54.4 3.0 27 52-78 19-45 (247)
368 2gf0_A GTP-binding protein DI- 96.8 0.00091 3.1E-08 50.3 4.0 25 53-77 7-31 (199)
369 1fzq_A ADP-ribosylation factor 96.8 0.00075 2.6E-08 50.6 3.5 26 52-77 14-39 (181)
370 2hxs_A RAB-26, RAS-related pro 96.8 0.00071 2.4E-08 49.9 3.4 25 54-78 6-30 (178)
371 3q72_A GTP-binding protein RAD 96.8 0.00063 2.2E-08 49.6 3.0 23 55-77 3-25 (166)
372 2bme_A RAB4A, RAS-related prot 96.8 0.00072 2.5E-08 50.3 3.4 26 53-78 9-34 (186)
373 1f2t_B RAD50 ABC-ATPase; DNA d 96.8 0.00013 4.6E-09 54.0 -0.7 45 135-180 53-124 (148)
374 2cxx_A Probable GTP-binding pr 96.8 0.00051 1.7E-08 51.3 2.5 22 56-77 3-24 (190)
375 3t15_A Ribulose bisphosphate c 96.8 0.0013 4.5E-08 53.6 5.2 33 50-82 32-64 (293)
376 3tw8_B RAS-related protein RAB 96.8 0.00044 1.5E-08 51.1 2.0 24 54-77 9-32 (181)
377 3b1v_A Ferrous iron uptake tra 96.8 0.00054 1.8E-08 55.6 2.8 23 55-77 4-26 (272)
378 3dm5_A SRP54, signal recogniti 96.8 0.0014 4.7E-08 57.0 5.4 39 53-91 99-139 (443)
379 1nrj_B SR-beta, signal recogni 96.8 0.00088 3E-08 51.5 3.8 25 54-78 12-36 (218)
380 3llm_A ATP-dependent RNA helic 96.8 0.00071 2.4E-08 53.2 3.3 26 50-75 72-97 (235)
381 3t1o_A Gliding protein MGLA; G 96.8 0.00078 2.7E-08 50.4 3.4 26 54-79 14-39 (198)
382 1m8p_A Sulfate adenylyltransfe 96.8 0.00084 2.9E-08 60.1 4.1 29 51-79 393-421 (573)
383 2p5s_A RAS and EF-hand domain 96.8 0.00092 3.1E-08 50.7 3.8 30 49-78 23-52 (199)
384 1moz_A ARL1, ADP-ribosylation 96.8 0.00057 2E-08 50.8 2.6 25 52-76 16-40 (183)
385 2bov_A RAla, RAS-related prote 96.8 0.00082 2.8E-08 50.9 3.5 25 54-78 14-38 (206)
386 3kkq_A RAS-related protein M-R 96.8 0.00084 2.9E-08 49.9 3.5 26 53-78 17-42 (183)
387 1m7b_A RND3/RHOE small GTP-bin 96.8 0.00081 2.8E-08 50.3 3.4 25 54-78 7-31 (184)
388 2iwr_A Centaurin gamma 1; ANK 96.8 0.00083 2.8E-08 49.7 3.4 26 53-78 6-31 (178)
389 2gf9_A RAS-related protein RAB 96.8 0.00085 2.9E-08 50.4 3.5 27 52-78 20-46 (189)
390 2z43_A DNA repair and recombin 96.8 0.00061 2.1E-08 56.5 2.9 38 41-78 94-131 (324)
391 2fg5_A RAB-22B, RAS-related pr 96.8 0.00084 2.9E-08 50.7 3.4 26 53-78 22-47 (192)
392 3tqf_A HPR(Ser) kinase; transf 96.8 0.00096 3.3E-08 50.8 3.6 25 52-76 14-38 (181)
393 1ko7_A HPR kinase/phosphatase; 96.8 0.00065 2.2E-08 56.4 2.9 34 41-76 133-166 (314)
394 3iev_A GTP-binding protein ERA 96.8 0.00065 2.2E-08 55.9 3.0 27 52-78 8-34 (308)
395 1wf3_A GTP-binding protein; GT 96.8 0.00066 2.3E-08 55.8 3.0 22 56-77 9-30 (301)
396 2hf9_A Probable hydrogenase ni 96.8 0.001 3.5E-08 51.4 3.9 26 53-78 37-62 (226)
397 3tkl_A RAS-related protein RAB 96.8 0.00089 3E-08 50.3 3.5 26 53-78 15-40 (196)
398 1njg_A DNA polymerase III subu 96.8 0.00097 3.3E-08 51.2 3.8 25 55-79 46-70 (250)
399 1vg8_A RAS-related protein RAB 96.8 0.00093 3.2E-08 50.7 3.6 26 53-78 7-32 (207)
400 1mh1_A RAC1; GTP-binding, GTPa 96.8 0.0009 3.1E-08 49.6 3.5 24 54-77 5-28 (186)
401 1z06_A RAS-related protein RAB 96.8 0.00092 3.1E-08 50.2 3.5 26 53-78 19-44 (189)
402 2xtp_A GTPase IMAP family memb 96.8 0.00082 2.8E-08 53.5 3.4 26 53-78 21-46 (260)
403 3t5g_A GTP-binding protein RHE 96.8 0.0009 3.1E-08 49.6 3.4 23 55-77 7-29 (181)
404 2fv8_A H6, RHO-related GTP-bin 96.7 0.00079 2.7E-08 51.5 3.1 32 47-78 18-49 (207)
405 3oes_A GTPase rhebl1; small GT 96.7 0.00093 3.2E-08 50.8 3.5 28 51-78 21-48 (201)
406 3bh0_A DNAB-like replicative h 96.7 0.0007 2.4E-08 56.0 2.9 36 41-77 56-91 (315)
407 3dz8_A RAS-related protein RAB 96.7 0.00092 3.2E-08 50.3 3.4 25 54-78 23-47 (191)
408 1ksh_A ARF-like protein 2; sma 96.7 0.00077 2.6E-08 50.3 2.9 27 52-78 16-42 (186)
409 2atv_A RERG, RAS-like estrogen 96.7 0.0012 4.1E-08 49.9 4.0 26 52-77 26-51 (196)
410 1zj6_A ADP-ribosylation factor 96.7 0.00097 3.3E-08 50.0 3.4 26 52-77 14-39 (187)
411 2cjw_A GTP-binding protein GEM 96.7 0.001 3.5E-08 50.5 3.5 24 55-78 7-30 (192)
412 1zd9_A ADP-ribosylation factor 96.7 0.00092 3.1E-08 50.3 3.2 28 51-78 19-46 (188)
413 3auy_A DNA double-strand break 96.7 0.00078 2.7E-08 56.9 3.0 29 47-76 19-47 (371)
414 2a5j_A RAS-related protein RAB 96.7 0.001 3.6E-08 50.0 3.5 27 52-78 19-45 (191)
415 1l8q_A Chromosomal replication 96.7 0.00074 2.5E-08 55.6 2.8 26 53-78 36-61 (324)
416 2ew1_A RAS-related protein RAB 96.7 0.00099 3.4E-08 51.1 3.4 27 52-78 24-50 (201)
417 2dby_A GTP-binding protein; GD 96.7 0.0009 3.1E-08 56.7 3.4 23 56-78 3-25 (368)
418 4hlc_A DTMP kinase, thymidylat 96.7 0.0012 4.2E-08 51.2 3.9 26 54-79 2-27 (205)
419 3iby_A Ferrous iron transport 96.7 0.00081 2.8E-08 54.0 2.9 22 56-77 3-24 (256)
420 3cph_A RAS-related protein SEC 96.7 0.0012 4.2E-08 50.2 3.8 27 52-78 18-44 (213)
421 1x6v_B Bifunctional 3'-phospho 96.7 0.0011 3.8E-08 59.9 4.0 26 53-78 51-76 (630)
422 1x3s_A RAS-related protein RAB 96.7 0.0012 4E-08 49.5 3.5 26 53-78 14-39 (195)
423 3gmt_A Adenylate kinase; ssgci 96.7 0.0015 5.2E-08 51.8 4.2 28 54-81 8-35 (230)
424 2bcg_Y Protein YP2, GTP-bindin 96.7 0.0011 3.8E-08 50.4 3.4 25 54-78 8-32 (206)
425 3reg_A RHO-like small GTPase; 96.7 0.0012 4E-08 49.8 3.5 26 53-78 22-47 (194)
426 3t5d_A Septin-7; GTP-binding p 96.6 0.00065 2.2E-08 54.8 2.0 22 55-76 9-30 (274)
427 1zbd_A Rabphilin-3A; G protein 96.6 0.001 3.4E-08 50.5 3.0 24 55-78 9-32 (203)
428 2h17_A ADP-ribosylation factor 96.6 0.00093 3.2E-08 49.9 2.7 27 51-77 18-44 (181)
429 3c5c_A RAS-like protein 12; GD 96.6 0.0013 4.6E-08 49.4 3.6 26 53-78 20-45 (187)
430 2fh5_B SR-beta, signal recogni 96.6 0.0012 4.1E-08 50.5 3.4 25 54-78 7-31 (214)
431 3hws_A ATP-dependent CLP prote 96.6 0.0017 5.9E-08 54.3 4.6 30 53-82 50-79 (363)
432 2qu8_A Putative nucleolar GTP- 96.6 0.0011 3.7E-08 51.7 3.0 25 53-77 28-52 (228)
433 2e87_A Hypothetical protein PH 96.6 0.00076 2.6E-08 56.6 2.3 27 52-78 165-191 (357)
434 1gwn_A RHO-related GTP-binding 96.6 0.0013 4.3E-08 50.6 3.4 26 53-78 27-52 (205)
435 1jal_A YCHF protein; nucleotid 96.6 0.0013 4.3E-08 55.7 3.6 24 54-77 2-25 (363)
436 2i1q_A DNA repair and recombin 96.6 0.001 3.6E-08 54.8 3.0 37 41-77 85-121 (322)
437 3hdt_A Putative kinase; struct 96.6 0.0019 6.6E-08 50.9 4.4 29 53-81 13-41 (223)
438 1d2n_A N-ethylmaleimide-sensit 96.6 0.0023 7.9E-08 51.2 4.8 33 51-83 61-93 (272)
439 2zts_A Putative uncharacterize 96.6 0.0012 3.9E-08 51.7 2.9 34 41-75 17-51 (251)
440 1jwy_B Dynamin A GTPase domain 96.6 0.0011 3.8E-08 54.1 2.9 24 55-78 25-48 (315)
441 3cbq_A GTP-binding protein REM 96.6 0.0011 3.7E-08 50.5 2.6 25 53-77 22-46 (195)
442 2v3c_C SRP54, signal recogniti 96.5 0.0013 4.3E-08 57.0 3.3 27 53-79 98-124 (432)
443 2o52_A RAS-related protein RAB 96.5 0.0011 3.7E-08 50.5 2.6 26 52-77 23-48 (200)
444 4dhe_A Probable GTP-binding pr 96.5 0.00068 2.3E-08 52.2 1.5 26 53-78 28-53 (223)
445 3a1s_A Iron(II) transport prot 96.5 0.0012 4.2E-08 52.9 3.0 23 55-77 6-28 (258)
446 2gco_A H9, RHO-related GTP-bin 96.5 0.0015 5.1E-08 49.7 3.4 24 55-78 26-49 (201)
447 2b6h_A ADP-ribosylation factor 96.5 0.0019 6.6E-08 48.8 3.9 26 51-76 26-51 (192)
448 3i8s_A Ferrous iron transport 96.5 0.0014 4.9E-08 52.9 3.4 25 54-78 3-27 (274)
449 3p32_A Probable GTPase RV1496/ 96.5 0.0019 6.6E-08 54.2 4.2 29 50-78 75-103 (355)
450 2atx_A Small GTP binding prote 96.5 0.0016 5.6E-08 48.9 3.4 24 55-78 19-42 (194)
451 2h57_A ADP-ribosylation factor 96.5 0.00083 2.8E-08 50.5 1.8 27 52-78 19-45 (190)
452 2q3h_A RAS homolog gene family 96.5 0.0014 4.8E-08 49.6 3.0 27 51-77 17-43 (201)
453 3syl_A Protein CBBX; photosynt 96.5 0.0018 6.1E-08 52.6 3.8 27 52-78 65-91 (309)
454 4gzl_A RAS-related C3 botulinu 96.5 0.0018 6.3E-08 49.4 3.7 26 52-77 28-53 (204)
455 2chg_A Replication factor C sm 96.5 0.0017 5.7E-08 49.3 3.3 23 56-78 40-62 (226)
456 2fu5_C RAS-related protein RAB 96.5 0.00094 3.2E-08 49.6 1.8 24 54-77 8-31 (183)
457 2f7s_A C25KG, RAS-related prot 96.5 0.0014 4.7E-08 50.3 2.8 25 53-77 24-48 (217)
458 1ofh_A ATP-dependent HSL prote 96.4 0.0026 8.8E-08 51.4 4.4 29 53-81 49-77 (310)
459 4bas_A ADP-ribosylation factor 96.4 0.0018 6.2E-08 48.6 3.3 27 51-77 14-40 (199)
460 1sky_E F1-ATPase, F1-ATP synth 96.4 0.0016 5.6E-08 56.8 3.3 35 42-78 141-175 (473)
461 3n70_A Transport activator; si 96.4 0.0019 6.4E-08 47.0 3.2 27 52-78 22-48 (145)
462 2il1_A RAB12; G-protein, GDP, 96.4 0.0018 6E-08 48.9 3.1 24 54-77 26-49 (192)
463 4i1u_A Dephospho-COA kinase; s 96.4 0.0023 7.9E-08 50.0 3.8 26 55-81 10-35 (210)
464 1sxj_D Activator 1 41 kDa subu 96.4 0.00095 3.3E-08 55.0 1.7 33 47-79 49-83 (353)
465 2j1l_A RHO-related GTP-binding 96.4 0.0016 5.5E-08 50.1 2.9 25 53-77 33-57 (214)
466 2hup_A RAS-related protein RAB 96.4 0.002 6.9E-08 49.1 3.4 27 52-78 27-53 (201)
467 2orw_A Thymidine kinase; TMTK, 96.4 0.0022 7.6E-08 48.8 3.6 24 53-76 2-25 (184)
468 2z4s_A Chromosomal replication 96.4 0.0016 5.6E-08 56.2 3.2 25 54-78 130-154 (440)
469 2v1u_A Cell division control p 96.4 0.0019 6.5E-08 53.6 3.5 28 51-78 41-68 (387)
470 2aka_B Dynamin-1; fusion prote 96.4 0.0014 4.9E-08 52.9 2.6 25 54-78 26-50 (299)
471 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0041 1.4E-07 51.4 5.5 28 51-78 42-69 (322)
472 1h65_A Chloroplast outer envel 96.4 0.0016 5.5E-08 52.3 2.9 25 54-78 39-63 (270)
473 3eie_A Vacuolar protein sortin 96.4 0.003 1E-07 52.0 4.5 31 51-81 48-78 (322)
474 2axn_A 6-phosphofructo-2-kinas 96.4 0.0025 8.6E-08 56.4 4.2 28 52-79 33-60 (520)
475 3def_A T7I23.11 protein; chlor 96.4 0.0019 6.6E-08 51.6 3.2 26 53-78 35-60 (262)
476 2gks_A Bifunctional SAT/APS ki 96.4 0.0022 7.5E-08 57.1 3.8 28 52-79 370-397 (546)
477 3llu_A RAS-related GTP-binding 96.4 0.0018 6E-08 49.1 2.7 26 53-78 19-44 (196)
478 2j0v_A RAC-like GTP-binding pr 96.3 0.003 1E-07 48.2 4.1 26 53-78 8-33 (212)
479 2x77_A ADP-ribosylation factor 96.3 0.0017 5.8E-08 48.6 2.6 25 52-76 20-44 (189)
480 3cpj_B GTP-binding protein YPT 96.3 0.0024 8.3E-08 49.4 3.5 25 54-78 13-37 (223)
481 3pfi_A Holliday junction ATP-d 96.3 0.0032 1.1E-07 51.8 4.5 28 54-81 55-82 (338)
482 3d8b_A Fidgetin-like protein 1 96.3 0.0033 1.1E-07 52.7 4.6 30 52-81 115-144 (357)
483 3q3j_B RHO-related GTP-binding 96.3 0.0024 8.2E-08 49.2 3.5 27 52-78 25-51 (214)
484 4a1f_A DNAB helicase, replicat 96.3 0.0018 6.3E-08 54.2 3.0 37 41-78 34-70 (338)
485 1bif_A 6-phosphofructo-2-kinas 96.3 0.0026 8.8E-08 55.4 4.0 28 52-79 37-64 (469)
486 1um8_A ATP-dependent CLP prote 96.3 0.0036 1.2E-07 52.6 4.6 29 53-81 71-99 (376)
487 2g3y_A GTP-binding protein GEM 96.3 0.002 6.8E-08 50.1 2.8 24 54-77 37-60 (211)
488 2yc2_C IFT27, small RAB-relate 96.3 0.001 3.4E-08 50.4 0.9 25 53-77 19-43 (208)
489 1c9k_A COBU, adenosylcobinamid 96.3 0.0021 7.3E-08 49.1 2.7 21 57-77 2-22 (180)
490 3uk6_A RUVB-like 2; hexameric 96.2 0.0029 1E-07 52.6 3.7 31 50-80 66-96 (368)
491 2j37_W Signal recognition part 96.2 0.0036 1.2E-07 55.2 4.4 39 52-90 99-139 (504)
492 1g41_A Heat shock protein HSLU 96.2 0.0041 1.4E-07 54.0 4.5 28 55-82 51-78 (444)
493 1u94_A RECA protein, recombina 96.2 0.0024 8.1E-08 53.9 3.0 38 41-78 49-87 (356)
494 2xxa_A Signal recognition part 96.2 0.0042 1.4E-07 53.7 4.6 43 48-90 94-139 (433)
495 3kta_B Chromosome segregation 96.2 0.00057 1.9E-08 51.9 -1.0 43 136-180 61-128 (173)
496 2q6t_A DNAB replication FORK h 96.2 0.0035 1.2E-07 54.1 3.9 37 41-78 188-224 (444)
497 4djt_A GTP-binding nuclear pro 96.1 0.00093 3.2E-08 51.3 0.1 24 54-77 11-34 (218)
498 2qp9_X Vacuolar protein sortin 96.1 0.0041 1.4E-07 52.1 4.1 30 52-81 82-111 (355)
499 4dcu_A GTP-binding protein ENG 96.1 0.0016 5.4E-08 56.5 1.6 23 55-77 24-46 (456)
500 3cnl_A YLQF, putative uncharac 96.1 0.0027 9.4E-08 51.1 2.9 24 55-78 100-123 (262)
No 1
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.92 E-value=2.6e-27 Score=197.85 Aligned_cols=152 Identities=14% Similarity=0.194 Sum_probs=103.2
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------c
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------V 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~ 94 (199)
..|+++||+|+|++. .++|++ +||++++|++++|+||||||||||+++|+|++.|..+.+ ..++... .
T Consensus 52 ~~i~~~~vs~~y~~~-~~vL~~-isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~G~~i~~~~~~~~r~ 128 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-RETLQD-VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI-RIDGQDISQVTQASLRS 128 (306)
T ss_dssp CCEEEEEEEEESSTT-CEEEEE-EEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEE-EETTEETTSBCHHHHHH
T ss_pred CeEEEEEEEEEcCCC-Cceeee-eeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEE-EECCEEcccCCHHHHhc
Confidence 469999999999643 479999 999999999999999999999999999999988764433 2222110 0
Q ss_pred cccc-ccCCCC------------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640 95 HADI-IVPRGG------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 95 ~~~~-~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~- 156 (199)
.... ...... ......+.+.+.+...........+|.++++ .|.+|||||||||+||||++.
T Consensus 129 ~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~ 208 (306)
T 3nh6_A 129 HIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA 208 (306)
T ss_dssp TEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred ceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence 0011 111100 0012234444555333333344566777665 578999999999999999975
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+...+ .++|.|+|+-.
T Consensus 209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~--~Tvi~itH~l~ 250 (306)
T 3nh6_A 209 PGIILLDEATSALDTSNERAIQASLAKVCAN--RTTIVVAHRLS 250 (306)
T ss_dssp CSEEEEECCSSCCCHHHHHHHHHHHHHHHTT--SEEEEECCSHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCC--CEEEEEEcChH
Confidence 55556665544 57799999755
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.91 E-value=1e-25 Score=191.72 Aligned_cols=149 Identities=13% Similarity=0.065 Sum_probs=99.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------- 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------- 93 (199)
-|+++||+++|.+. ++|++ +||++++|++++|+||||||||||+|+|+|++.+..+.+ ..++...
T Consensus 4 ~l~i~~ls~~y~~~--~~L~~-vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I-~i~G~~i~~~~~~~~~~~ 79 (359)
T 3fvq_A 4 ALHIGHLSKSFQNT--PVLND-ISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI-SLSGKTIFSKNTNLPVRE 79 (359)
T ss_dssp CEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE-EETTEEEESSSCBCCGGG
T ss_pred EEEEEeEEEEECCE--EEEEe-eEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE-EECCEECcccccccchhh
Confidence 48899999999765 79999 999999999999999999999999999999988765433 3222111
Q ss_pred cccccccCC-C-CCC--------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640 94 VHADIIVPR-G-GEN--------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 94 ~~~~~~~~~-~-~~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~- 156 (199)
....+.+.. . ..+ ....+...+.+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~---~~gL~~~~~r~~~~LSGGq~QRValArAL~~~ 156 (359)
T 3fvq_A 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLE---LTGISELAGRYPHELSGGQQQRAALARALAPD 156 (359)
T ss_dssp SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHH---HHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHH---HcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 001111110 0 000 0001111111211111 1233333345678999999999999999975
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.+.+.++++|.++||.+
T Consensus 157 P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 157 PELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200 (359)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 556677777777899999999875
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.91 E-value=6.8e-26 Score=219.67 Aligned_cols=157 Identities=14% Similarity=0.083 Sum_probs=115.1
Q ss_pred ccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee------------------
Q psy9640 23 ARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV------------------ 83 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~------------------ 83 (199)
.+.|+++||+|+|++. ..++|+| +||+|++|+.+||+|+||||||||+++|.+++.|..+
T Consensus 1074 ~g~I~f~nVsf~Y~~~~~~~VL~~-isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERPEIEILKG-LSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp CCCEEEEEEEECCTTSCSSCSEEE-EEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHH
T ss_pred CCeEEEEEEEEeCCCCCCCccccc-eeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHH
Confidence 3479999999999764 3479999 9999999999999999999999999999999887543
Q ss_pred ---eeecccchhccccccccCC-CC-CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEecc
Q psy9640 84 ---TLLSMDSFYRVHADIIVPR-GG-ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAG 154 (199)
Q Consensus 84 ---~~i~~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~ 154 (199)
++++||.+.....-..+-. +. ....+.++++++++......++..+|.++++ .|.+||||||||++||||+
T Consensus 1153 ~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1153 SQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp TTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred hheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 2233332211100000000 00 1234567888888666666677789999998 6889999999999999999
Q ss_pred ch---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+. +.+.+.+.+.+. |+|.|+|.-.|.
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~--TvI~IAHRLsTi 1279 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGR--TCIVIAHRLNTV 1279 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSS--EEEEECSSSSTT
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCC--EEEEeccCHHHH
Confidence 76 566666777665 559999976653
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.90 E-value=2.9e-25 Score=190.14 Aligned_cols=149 Identities=14% Similarity=0.106 Sum_probs=100.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------ccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HAD 97 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~ 97 (199)
.|+++||+++|++. .+|++ +||++++|++++|+||||||||||+|+|+|++.+..+. +..++.... ...
T Consensus 3 ~l~~~~l~~~yg~~--~~L~~-vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~-I~i~G~~~~~~~~~~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGEV--VVSKD-INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD-LFIGEKRMNDTPPAERGVG 78 (381)
T ss_dssp CEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTCCGGGSCEE
T ss_pred EEEEEeEEEEECCE--EEEee-eEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeE-EEECCEECCCCCHHHCCEE
Confidence 48899999999765 79999 99999999999999999999999999999998876543 333322110 011
Q ss_pred cccCCCC--CCC--------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 98 IIVPRGG--ENC--------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 98 ~~~~~~~--~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
+.+.... .+. ...+...+.+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~---~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lL 155 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE---VLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHH---HTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEE
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEE
Confidence 1111111 010 011111122212221 1233333455688999999999999999975
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++..+.++++|.|+||.+
T Consensus 156 LLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (381)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 667777777777899999999875
No 5
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.90 E-value=1.1e-25 Score=182.98 Aligned_cols=153 Identities=17% Similarity=0.179 Sum_probs=96.2
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------cc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VH 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~ 95 (199)
.++++||+++|++..+++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++... ..
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDN-INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ-VLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEE-EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEETTTSCHHHHHHH
T ss_pred ceeEEEEEEEeCCCCcceeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEEhhhCCHHHHHhc
Confidence 588999999994322479999 99999999999999999999999999999998776443 33222100 00
Q ss_pred cccc-cCCCCC------------CCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640 96 ADII-VPRGGE------------NCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 96 ~~~~-~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
.... ...... .....+.+.+.+............|.++++ .+.+|||||+|||+||||++.
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 0111 100000 011122233333111111111223333332 467999999999999999976
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.. . +.++|.++||.+.
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~ 206 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLST 206 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGG
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHH
Confidence 555555553 2 6788999998664
No 6
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.90 E-value=1.3e-25 Score=217.70 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=114.8
Q ss_pred ccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------
Q psy9640 23 ARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------- 93 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------- 93 (199)
...|+++||+|+|++. ..++|+| +||++++|+.++|+||||||||||+++|+|++.+..+. +..|+...
T Consensus 413 ~g~I~~~nvsF~Y~~~~~~~vL~~-isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~-I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRPDVPILRG-MNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGK-ITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CCCEEEEEEEECCSSSTTSCSEEE-EEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEE-EEETTEETTTSCHHHH
T ss_pred CCcEEEEEeeeeCCCCCCCceeec-eEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCc-ccCCCccchhccHHHH
Confidence 3479999999999764 4689999 99999999999999999999999999999998876543 33332110
Q ss_pred --cccccccCCC------------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccc
Q psy9640 94 --VHADIIVPRG------------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGE 155 (199)
Q Consensus 94 --~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~ 155 (199)
...-..+..- .....+.+++.++++......++..+|.|++| .|.+|||||||||+||||++
T Consensus 491 r~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp HHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred hhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 0000111100 11124567788888555555667789999988 68899999999999999997
Q ss_pred h---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 156 T---------------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
. +.+.+.+.+.+. |+|.|+|.-.++
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~--T~iiiaHrls~i 616 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGR--TTIIIAHRLSTI 616 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTS--EEEEECSCTTTT
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC--EEEEEcccHHHH
Confidence 5 556666666654 559999987764
No 7
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.90 E-value=3.7e-25 Score=179.27 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=96.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------ccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VHA 96 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~~ 96 (199)
++++|++++|++. +++|++ +||++++|++++|+||||||||||+++|+|++.+..+.+ ..++... ...
T Consensus 2 l~~~~l~~~y~~~-~~vl~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~i 78 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRD-ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQPIDNISLENWRSQI 78 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEE-EEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE-EETTEESTTTSCSCCTTTC
T ss_pred EEEEEEEEEeCCC-CceEEE-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEEhhhCCHHHHHhhE
Confidence 6789999999422 479999 999999999999999999999999999999987654332 2222100 000
Q ss_pred cc-ccCCCC-------------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640 97 DI-IVPRGG-------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 97 ~~-~~~~~~-------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
.. ...... ......+.+.+.+............|.++++ .+.+|||||+|||+||||++.
T Consensus 79 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p 158 (243)
T 1mv5_A 79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (243)
T ss_dssp CEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence 00 000000 0011223344444222222233334444433 467999999999999999976
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.. . +.++|.++||.+
T Consensus 159 ~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~ 199 (243)
T 1mv5_A 159 KILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLS 199 (243)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChH
Confidence 666666665 3 678899999865
No 8
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=1.9e-25 Score=201.36 Aligned_cols=155 Identities=18% Similarity=0.197 Sum_probs=106.8
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------- 94 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------- 94 (199)
...++++||+|+|++..+++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..|+....
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~-isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~-i~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSG-VNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR-VEVDELDVRTVKLKDLR 416 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEE-EEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEE-EEESSSBGGGBCHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceec-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcE-EEECCEEcccCCHHHHH
Confidence 34699999999997655689999 99999999999999999999999999999998876443 333322110
Q ss_pred -ccc-cccCCCC------------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 95 -HAD-IIVPRGG------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 95 -~~~-~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
... ..+.... ......+.+.++++..........+|.++++ .|.+||||||||++||||++.
T Consensus 417 ~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 417 GHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp HHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred hheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 000 1111000 1112334555555333333344567777765 678999999999999999975
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+... +.++|.|+|+..+
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~ 540 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTK--GCTTFIITQKIPT 540 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHST--TCEEEEEESCHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCC--CCEEEEEecChHH
Confidence 5555666544 5677999997653
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.90 E-value=6.8e-25 Score=186.85 Aligned_cols=155 Identities=14% Similarity=0.118 Sum_probs=99.9
Q ss_pred ccccCcccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh------
Q psy9640 21 ILARGRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY------ 92 (199)
Q Consensus 21 ~~~~~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~------ 92 (199)
..+.-|+++||+++|+.. ..++|++ |||++++|++++|+||||||||||+|+|+|++.|..+.+ ..++..
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~-vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I-~i~G~~i~~~~~ 97 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNN-VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV-LVDGQELTTLSE 97 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECSSCCH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEe-eEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEE-EECCEECCcCCH
Confidence 334469999999999642 2469999 999999999999999999999999999999988765443 332211
Q ss_pred ------ccccccccCC-CCCCC-chH--------------HHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeE
Q psy9640 93 ------RVHADIIVPR-GGENC-VAI--------------DLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSI 150 (199)
Q Consensus 93 ------~~~~~~~~~~-~~~~~-~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrvai 150 (199)
+....+.+.. ..... ... +...+.+.+.+. .+.+....+..+.+|||||+|||+|
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~---~vgL~~~~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLS---LVGLGDKHDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHH---HHTCGGGTTCCTTTSCHHHHHHHHH
T ss_pred HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCchHhcCChhhCCHHHHHHHHH
Confidence 0011111111 11100 001 111111111111 1233333345678999999999999
Q ss_pred Eeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 151 LRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 151 aRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|||++. +.+.+.++..+.+.+.|+|+||-+
T Consensus 175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 999975 666666766666889999999754
No 10
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.90 E-value=1.4e-25 Score=201.97 Aligned_cols=156 Identities=18% Similarity=0.178 Sum_probs=107.1
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------- 94 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------- 94 (199)
...++++||+|+|++...++|+| +||++++|++++|+||||||||||+++|+|++.|..+. +..++....
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~-isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~-i~~~g~~~~~~~~~~~r 414 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKD-INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ-ILIDGHNIKDFLTGSLR 414 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEE-EEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE-EEETTEEGGGSCHHHHH
T ss_pred CCeEEEEEEEEEcCCCCCcceee-eEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE-EEECCEEhhhCCHHHHh
Confidence 34699999999998655689999 99999999999999999999999999999998876443 333321100
Q ss_pred -ccc-cccCCCC------------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 95 -HAD-IIVPRGG------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 95 -~~~-~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
... ..+.... ......+++.++++..........+|.++++ .|.+||||||||++||||++.
T Consensus 415 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 415 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred hheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 000 1111100 0012234555555333333345567777766 578999999999999999975
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+.+.+.+...+ .+.|.|+|+.++.
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~--~t~i~itH~l~~~ 539 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKD--RTTLIVAHRLSTI 539 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT--SEEEEECSSGGGT
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCC--CEEEEEecCHHHH
Confidence 44555555444 5779999987754
No 11
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=7.7e-26 Score=204.30 Aligned_cols=154 Identities=17% Similarity=0.168 Sum_probs=103.5
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------- 94 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------- 94 (199)
...++++||+|+|++. .++|+| +||++++|++++|+||||||||||+++|+|++.|..+. +..++....
T Consensus 352 ~~~i~~~~v~~~y~~~-~~~l~~-isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~-i~~~g~~i~~~~~~~~r 428 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDKK-KPVLKD-ITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ-ILVDGIDIRKIKRSSLR 428 (598)
T ss_dssp CCCEEEEEEECCSSSS-SCSCCS-EEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEE-EEETTEEGGGSCHHHHH
T ss_pred CCeEEEEEEEEECCCC-Cccccc-eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeE-EEECCEEhhhCCHHHHH
Confidence 3469999999999753 479999 99999999999999999999999999999998876443 333321110
Q ss_pred -ccc-cccCCCCC-----------C-CchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 95 -HAD-IIVPRGGE-----------N-CVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 95 -~~~-~~~~~~~~-----------~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
... ..+..... + ..+.+++.++++..........+|.++++ .|.+||||||||++||||++.
T Consensus 429 ~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~ 508 (598)
T 3qf4_B 429 SSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA 508 (598)
T ss_dssp HHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred hceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 000 11110000 0 11223344444222222234466777776 578999999999999999975
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+... +.+.|.|+|+.++
T Consensus 509 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~ 552 (598)
T 3qf4_B 509 NPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSIIIAHRLNT 552 (598)
T ss_dssp CCSEEEECCCCTTCCHHHHHHHHHHHHHHHT--TSEEEEESCCTTH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHH
Confidence 4555555544 5677999998764
No 12
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.90 E-value=9.5e-25 Score=196.58 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=104.2
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------c
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------V 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~ 94 (199)
..++++||+|+|++..+++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..|+... .
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~-i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~-i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSH-VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS-ICLDGHDVRDYKLTNLRR 417 (582)
T ss_pred CeEEEEEEEEEcCCCCcccccc-ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE-EEECCEEhhhCCHHHHhc
Confidence 4599999999997533479999 99999999999999999999999999999998765433 22222110 0
Q ss_pred ccc-cccCCC------------CC-CCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 95 HAD-IIVPRG------------GE-NCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 95 ~~~-~~~~~~------------~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
... ..+... .. ...+.+++.+.++..........+|.++++ .|.+||||||||++||||++.
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~ 497 (582)
T 3b5x_A 418 HFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR 497 (582)
T ss_pred CeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc
Confidence 000 000000 00 112234455555333333344566777776 678999999999999999975
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+... +.++|.++|+..+
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~ 541 (582)
T 3b5x_A 498 DAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRLST 541 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHH
Confidence 4555555543 5678999998654
No 13
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.89 E-value=6.7e-25 Score=176.98 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=95.4
Q ss_pred cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh-----------
Q psy9640 26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----------- 92 (199)
Q Consensus 26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----------- 92 (199)
++++||+++|+.. ..++|++ +||++++|++++|+||||||||||+++|+|++.|..+.+ ..++..
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~-isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKN-VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV-YIDNIKTNDLDDDELTK 79 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEE-EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTCCHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEe-eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE-EECCEEcccCCHHHHHH
Confidence 6789999999743 2369999 999999999999999999999999999999988765443 322210
Q ss_pred --ccccccccCC-CCCCC-c-----------------hHHHHHHHHHHHHhcCceeecCCce-eeecceecCCeeeeeeE
Q psy9640 93 --RVHADIIVPR-GGENC-V-----------------AIDLIVQHIHSQLQAGVSVDMPQGY-TYEGKRCAVSKICGVSI 150 (199)
Q Consensus 93 --~~~~~~~~~~-~~~~~-~-----------------~~~~~~~~l~~~~~~~~~~~~~~~~-~~~g~~lSgGq~Qrvai 150 (199)
+......... ..... . ..+...+.+.+.+. ...+...+ +..+.+|||||+|||+|
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LSgGq~QRv~i 156 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK---MAELEERFANHKPNQLSGGQQQRVAI 156 (235)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHH---HTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH---HCCCChhhhhCChhhCCHHHHHHHHH
Confidence 0001111111 11000 0 01111111212221 11222221 44577999999999999
Q ss_pred Eeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 151 LRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 151 aRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|||++. +.+.+.++....+.++|.++||.+
T Consensus 157 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 157 ARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 999976 555555555444788899999865
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.89 E-value=2.6e-24 Score=183.41 Aligned_cols=149 Identities=15% Similarity=0.163 Sum_probs=98.5
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------cccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHAD 97 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~ 97 (199)
.++++|++++|.+. ++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++... ....
T Consensus 3 ~l~~~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGNF--TALNN-INLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK-IYFDEKDVTELPPKDRNVG 78 (362)
T ss_dssp CEEEEEEEEESSSS--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCGGGTTEE
T ss_pred EEEEEeEEEEECCE--EEEEe-eEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceE-EEECCEECCcCCHhHCcEE
Confidence 37899999999654 79999 99999999999999999999999999999998776543 33332111 0011
Q ss_pred cccCC-CC-CCCchHH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 98 IIVPR-GG-ENCVAID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 98 ~~~~~-~~-~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
+.+.. .. .+-...+ ...+.+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~---~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 155 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAK---MLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVL 155 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 11111 11 1100011 11111111111 1233333345678999999999999999976
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++....+.++|.++||.+
T Consensus 156 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 156 LLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA 195 (362)
T ss_dssp EEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred EEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 666677766666788999999865
No 15
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.89 E-value=2.6e-24 Score=183.95 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=97.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------cccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHAD 97 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~ 97 (199)
.++++||+++|++. ++|++ +||++++|++++|+||||||||||+++|+|++.+..+.+ ..++... ....
T Consensus 11 ~l~~~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~i~g~~i~~~~~~~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGNF--TAVNK-LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI-YFGDRDVTYLPPKDRNIS 86 (372)
T ss_dssp CEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCGGGGTEE
T ss_pred eEEEEEEEEEECCE--EEEee-eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEE-EECCEECCCCChhhCcEE
Confidence 58999999999754 79999 999999999999999999999999999999987764433 3222110 0001
Q ss_pred cccCC-C-CCC--------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 98 IIVPR-G-GEN--------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 98 ~~~~~-~-~~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
+.+.. . ..+ ....+...+.+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~---~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 163 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE---LLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVL 163 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHH---HTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 11000 0 000 0011111112212221 1122222344577999999999999999976
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++....+.++|.++||.+
T Consensus 164 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 203 (372)
T 1v43_A 164 LMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 203 (372)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 666777776666789999999865
No 16
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.89 E-value=6.4e-25 Score=197.71 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=104.5
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------c
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------V 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~ 94 (199)
..++++||+|+|++..+++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..|+... .
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~-v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~-i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRN-INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH-ILMDGHDLREYTLASLRN 417 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEE-EEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEE-EEETTEETTTBCHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCccccc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCe-EEECCEEccccCHHHHHh
Confidence 4599999999997433479999 99999999999999999999999999999998776433 33332110 0
Q ss_pred ccc-cccCCCC------------C-CCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640 95 HAD-IIVPRGG------------E-NCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 95 ~~~-~~~~~~~------------~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~ 156 (199)
... ..+.... . ...+.+++.+.++..........+|.++++ .|.+||||||||++||||++.
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~ 497 (582)
T 3b60_A 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred hCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 000 0111000 0 112234455555222222334456777766 578999999999999999975
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+.+.+.+... +.++|.++|+..+.
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~ 542 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTI 542 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGT
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHHHH
Confidence 4555555543 56789999987654
No 17
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.89 E-value=1.3e-24 Score=179.01 Aligned_cols=152 Identities=14% Similarity=0.078 Sum_probs=97.4
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------- 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------- 93 (199)
-++++||+++|++. .++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~-isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~-I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKG-INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR-ILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEE-EEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEECCCSHHHHHHHH
T ss_pred EEEEEEEEEEECCC-CeEEEe-eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeE-EEECCEECCcccccHHHHh
Confidence 48999999999754 359999 99999999999999999999999999999988776443 33332111
Q ss_pred cccccccCC---CCCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640 94 VHADIIVPR---GGENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 94 ~~~~~~~~~---~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~ 156 (199)
......+.. ...... ..+...+.+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~ 160 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALK---RTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 160 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHH---HTTCGGGTTSBGGGSCHHHHHHHHHHHHHTT
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCchhhcCCcccCCHHHHHHHHHHHHHHc
Confidence 001111110 001100 11111112212221 1222222344677999999999999999976
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+.+.+.++....+.++|.++||-+.+
T Consensus 161 ~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV 207 (275)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 55556565422367889999987653
No 18
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.89 E-value=1.9e-24 Score=184.00 Aligned_cols=149 Identities=11% Similarity=0.123 Sum_probs=97.5
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------cccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHAD 97 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~ 97 (199)
.++++|++++|.+. ++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++... ....
T Consensus 3 ~l~~~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGKV--KAVDG-VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE-IYFDDVLVNDIPPKYREVG 78 (359)
T ss_dssp CEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCGGGTTEE
T ss_pred EEEEEEEEEEECCE--EEEee-eEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccE-EEECCEECCCCChhhCcEE
Confidence 47899999999654 79999 99999999999999999999999999999998776543 33332110 0011
Q ss_pred cccCC-CC-CC--------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 98 IIVPR-GG-EN--------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 98 ~~~~~-~~-~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
+.+.. .. .+ ....+...+.+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~---~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lL 155 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIAR---KLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVL 155 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHH---HTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 11111 00 00 0001111111111111 1222222344677999999999999999976
Q ss_pred ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++....+.++|.++||.+
T Consensus 156 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 156 LFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 666676766666789999999865
No 19
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.89 E-value=7.4e-25 Score=180.25 Aligned_cols=155 Identities=14% Similarity=0.036 Sum_probs=95.4
Q ss_pred cCcccccceeeccc-cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640 24 RGRDLEGVIKQYVN-MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------- 93 (199)
Q Consensus 24 ~~i~l~nvs~~y~~-~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------- 93 (199)
.-|+++||++.|++ ..+++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..++...
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~-vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~ 92 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQG-LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK-VLLDGEPLVQYDHHYLH 92 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEE-EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEEGGGBCHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEe-eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE-EEECCEEcccCCHHHHh
Confidence 35999999999975 22479999 99999999999999999999999999999998776443 33332110
Q ss_pred ccccc-ccCCCCCCC-------------chHHHHHHHHHHHHhcCceeecCCc----eeeecceecCCeeeeeeEEeccc
Q psy9640 94 VHADI-IVPRGGENC-------------VAIDLIVQHIHSQLQAGVSVDMPQG----YTYEGKRCAVSKICGVSILRAGE 155 (199)
Q Consensus 94 ~~~~~-~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~g~~lSgGq~QrvaiaRA~~ 155 (199)
..... ......... ...+.+...+...........++.+ .+..+.+|||||+|||+||||++
T Consensus 93 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 93 TQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred ccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 00011 111111000 0001111111010000011112212 23357799999999999999997
Q ss_pred h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
. +.+.+.+.....+.++|.++||.+
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 6 555555554444678899999854
No 20
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.89 E-value=1.8e-24 Score=173.19 Aligned_cols=147 Identities=12% Similarity=0.019 Sum_probs=94.8
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------------
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------------ 93 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------------ 93 (199)
++++|++++|++. ++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..++...
T Consensus 5 l~~~~l~~~y~~~--~~l~~-vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 5 LRAENIKKVIRGY--EILKG-ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGK-VFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEE-EEETTEECCSSCHHHHHHHH
T ss_pred EEEEeEEEEECCE--eeEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCCCCHHHHHHHH
Confidence 7899999999764 79999 99999999999999999999999999999988776544 33332110
Q ss_pred -cccccc-cCCCCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640 94 -VHADII-VPRGGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 94 -~~~~~~-~~~~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~ 156 (199)
...... ........ ...+.+ .+.+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 157 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLS---ELGLGDKLSRKPYELSGGEQQRVAIARALAN 157 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HTTCTTCTTCCGGGSCHHHHHHHHHHHHTTT
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHH---HcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 011111 11111111 011111 111111111 1223333344677999999999999999976
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.... +.++|.++||.+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~ 201 (224)
T 2pcj_A 158 EPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERE 201 (224)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence 55555555444 678899999854
No 21
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.89 E-value=2.5e-24 Score=183.04 Aligned_cols=149 Identities=14% Similarity=0.136 Sum_probs=98.0
Q ss_pred Ccccccceeec-cccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccc
Q psy9640 25 GRDLEGVIKQY-VNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHA 96 (199)
Q Consensus 25 ~i~l~nvs~~y-~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~ 96 (199)
.++++|++++| .+. ++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++... ...
T Consensus 14 ~l~~~~l~~~y~g~~--~vl~~-vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 14 TIEFVGVEKIYPGGA--RSVRG-VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD-VWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp EEEEEEEEECCTTST--TCEEE-EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTCCGGGSSE
T ss_pred eEEEEEEEEEEcCCC--EEEee-eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccE-EEECCEECCcCChhhCcE
Confidence 48999999999 543 79999 99999999999999999999999999999998776543 33332111 001
Q ss_pred ccccCC-C-CCCCchHH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640 97 DIIVPR-G-GENCVAID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---- 156 (199)
Q Consensus 97 ~~~~~~-~-~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---- 156 (199)
.+.+.. . ..+....+ ...+.+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~---~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 166 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLR---FMRLESYANRFPHELSGGQQQRVALARALAPRPQV 166 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 111110 0 11100001 11111111111 1223233344678999999999999999976
Q ss_pred -----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -----------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++....+.++|.++||.+
T Consensus 167 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 666677776666789999999865
No 22
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.89 E-value=2.3e-24 Score=183.34 Aligned_cols=149 Identities=15% Similarity=0.107 Sum_probs=97.7
Q ss_pred Ccccccceeeccccccc--cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640 25 GRDLEGVIKQYVNMVKP--AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------- 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~--~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------- 93 (199)
-++++||+++|++. + +|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...
T Consensus 3 ~l~i~~l~~~y~~~--~~~vl~~-vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~~~ 78 (353)
T 1oxx_K 3 RIIVKNVSKVFKKG--KVVALDN-VNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE-LYFDDRLVASNGKLIVP 78 (353)
T ss_dssp CEEEEEEEEEEGGG--TEEEEEE-EEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEE-EEETTEEEEETTEESSC
T ss_pred EEEEEeEEEEECCE--eeeeEec-eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECcccccccCC
Confidence 37899999999764 6 9999 99999999999999999999999999999998776443 33322110
Q ss_pred ---cccccccCC-CC-CC--------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640 94 ---VHADIIVPR-GG-EN--------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG 154 (199)
Q Consensus 94 ---~~~~~~~~~-~~-~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~ 154 (199)
....+.+.. .. .+ ....+...+.+.+.+. .+.+....+..+.+|||||+|||+||||+
T Consensus 79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~---~~~L~~~~~~~~~~LSGGq~QRvalAraL 155 (353)
T 1oxx_K 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAK---ILDIHHVLNHFPRELSGAQQQRVALARAL 155 (353)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHH---HTTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 000111111 00 00 0011111112212221 12222223446779999999999999999
Q ss_pred ch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+. +.+.+.++....+.++|.++||.+
T Consensus 156 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (353)
T ss_dssp TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 76 666677766666788999999865
No 23
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.88 E-value=3.3e-24 Score=183.49 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=98.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc----------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------- 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------- 94 (199)
.++++||+++|++. ++|++ +||++++|++++|+||||||||||+|+|+|++.+..+. +..++....
T Consensus 3 ~l~~~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~~~~~~~~~~~~~ 78 (372)
T 1g29_1 3 GVRLVDVWKVFGEV--TAVRE-MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ-IYIGDKLVADPEKGIFVPP 78 (372)
T ss_dssp EEEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE-EEETTEEEEEGGGTEECCG
T ss_pred EEEEEeEEEEECCE--EEEee-eEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccE-EEECCEECccccccccCCH
Confidence 37899999999654 79999 99999999999999999999999999999998776543 333322110
Q ss_pred ---ccccccCCC-C-CCCchHHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640 95 ---HADIIVPRG-G-ENCVAIDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE 155 (199)
Q Consensus 95 ---~~~~~~~~~-~-~~~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~ 155 (199)
...+.+... . .+....+. ..+.+.+.+. .+.+....+..+.+|||||+|||+||||++
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~---~~~L~~~~~r~~~~LSGGq~QRvalArAL~ 155 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAE---LLGLTELLNRKPRELSGGQRQRVALGRAIV 155 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HHTCGGGTTCCGGGSCHHHHHHHHHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HCCCchHhcCCcccCCHHHHHHHHHHHHHh
Confidence 011111111 1 11000111 1111111111 122333334467899999999999999997
Q ss_pred h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
. +.+.+.++....+.++|.++||.+
T Consensus 156 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 201 (372)
T 1g29_1 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (372)
T ss_dssp TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred cCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 6 666677776666789999999865
No 24
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.88 E-value=1.3e-24 Score=177.85 Aligned_cols=153 Identities=15% Similarity=0.100 Sum_probs=98.1
Q ss_pred cCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640 24 RGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------- 94 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------- 94 (199)
..++++||+++|++. .+++|++ +||++++|++++|+||||||||||+++|+|++.+ .|.+..++....
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~I~i~g~~i~~~~~~~~~ 92 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKS-INFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIGGKNVNKYNRNSIR 92 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEE-EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--EEEEEETTEEGGGBCHHHHH
T ss_pred CeEEEEEEEEEeCCCCcCceeEe-eEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CeEEEECCEEhhhcCHHHHh
Confidence 359999999999753 2469999 9999999999999999999999999999999864 355554432110
Q ss_pred -cccc-ccCCCCCC------------CchHHHHHHHHHHHHh-cCceeecCCceee----ecceecCCeeeeeeEEeccc
Q psy9640 95 -HADI-IVPRGGEN------------CVAIDLIVQHIHSQLQ-AGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGE 155 (199)
Q Consensus 95 -~~~~-~~~~~~~~------------~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~ 155 (199)
.... ........ ....+.+.+.+ +... ......+|.++++ .+.+|||||+|||+||||++
T Consensus 93 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l-~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 93 SIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKAT-KSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp TTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHH-HHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred ccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHH-HHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 0011 11111110 01112222222 1111 1111134444332 46799999999999999997
Q ss_pred h---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 156 T---------------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
. +.+.+.+... +.++|.++||.+..
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH~~~~~ 217 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLSTI 217 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGS
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHH
Confidence 6 5555655543 56889999987643
No 25
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.88 E-value=1e-24 Score=187.51 Aligned_cols=154 Identities=13% Similarity=0.099 Sum_probs=98.7
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------- 93 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------- 93 (199)
...|+++||+++|+....++|++ +||++++|++++|+||||||||||+++|+|++. ..|.+..++...
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~-vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILEN-ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEE-EEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCHHHHH
T ss_pred CCeEEEEEEEEEecCCCeEEeec-eeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCChHHHh
Confidence 35699999999996434589999 999999999999999999999999999999875 345554443211
Q ss_pred cccccccCC-CCC-----------CCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640 94 VHADIIVPR-GGE-----------NCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 94 ~~~~~~~~~-~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~- 156 (199)
....+.+.. ... .....+.+.+.+............|..+++ .+.+|||||+|||+||||++.
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 011111111 100 011123333334221111112223333333 455699999999999999975
Q ss_pred --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+...+.+... +.++|.++||.+.
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~--~~tvi~vtHd~e~ 216 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFA--DCTVILCEARIEA 216 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTT--TSCEEEECSSSGG
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEEcCHHH
Confidence 5555665543 5678999998764
No 26
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.88 E-value=2.4e-24 Score=176.74 Aligned_cols=145 Identities=8% Similarity=-0.019 Sum_probs=94.9
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H 95 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~ 95 (199)
-++++|+++.|.+. ++|++ +||++++|++++|+||||||||||+++|+|++.+..+.+ ..++.... .
T Consensus 11 ~l~~~~l~~~~~~~--~vL~~-vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 11 LLEASHLHYHVQQQ--ALIND-VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGEC-HLLGQNLNSWQPKALART 86 (266)
T ss_dssp EEEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEE-EETTEETTTSCHHHHHHH
T ss_pred eEEEEeEEEEeCCe--eEEEe-eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECCcCCHHHHhhe
Confidence 48999999999765 79999 999999999999999999999999999999987764433 32221100 0
Q ss_pred cccc-cCCCC-C---------------C-CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640 96 ADII-VPRGG-E---------------N-CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET- 156 (199)
Q Consensus 96 ~~~~-~~~~~-~---------------~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~- 156 (199)
.... ..... . . ....+.+.+.+ +.+ .+....+..+.+|||||+|||+||||++.
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l-~~~------~l~~~~~~~~~~LSgGq~QRv~iAraL~~~ 159 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVM-AQT------DCLALAQRDYRVLSGGEQQRVQLARVLAQL 159 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHH-HHT------TCSTTTTSBGGGCCHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHH-HHc------CChhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 0000 00000 0 0 01112222222 222 22222234567899999999999999972
Q ss_pred --------------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 --------------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 --------------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++...-+.++|.++||-+
T Consensus 160 ~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 160 WQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN 209 (266)
T ss_dssp CCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH
T ss_pred cccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH
Confidence 455555555544578899999864
No 27
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.88 E-value=1.7e-24 Score=195.44 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=103.4
Q ss_pred cC-cccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------
Q psy9640 24 RG-RDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------- 93 (199)
Q Consensus 24 ~~-i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------- 93 (199)
.. ++++||+|+|++. ..++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..++...
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~-isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~-i~~~g~~i~~~~~~~~ 416 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQD-FSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT-ISLDGHDIRQLNPVWL 416 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEE-EEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEE-EEETTEETTTBCHHHH
T ss_pred CCeEEEEEEEEEeCCCCCCccccc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcE-EEECCEEhhhCCHHHH
Confidence 45 9999999999753 2479999 99999999999999999999999999999998775433 33332110
Q ss_pred -cccc-cccCCC-------------CCC--CchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEe
Q psy9640 94 -VHAD-IIVPRG-------------GEN--CVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILR 152 (199)
Q Consensus 94 -~~~~-~~~~~~-------------~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaR 152 (199)
.... ...... ... ..+.+.+.+.++..........+|.++++ .|.+||||||||++|||
T Consensus 417 ~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAr 496 (595)
T 2yl4_A 417 RSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 496 (595)
T ss_dssp HHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHH
T ss_pred HhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 0000 000000 000 12334555555333323334466777766 46899999999999999
Q ss_pred ccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
|++. +.+.+.+... +.++|.++|+..
T Consensus 497 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~ 543 (595)
T 2yl4_A 497 ALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLS 543 (595)
T ss_dssp HHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHH
T ss_pred HHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH
Confidence 9975 5555555544 457799999754
No 28
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.88 E-value=4.1e-24 Score=181.34 Aligned_cols=147 Identities=10% Similarity=0.038 Sum_probs=97.0
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADI 98 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~ 98 (199)
++++|++++|++ . ++++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++... ....+
T Consensus 2 l~~~~l~~~y~~--~-~l~~-vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDN-LSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR-ILLDGKDVTDLSPEKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEE-EEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEE-EEETTEECTTSCHHHHTCEE
T ss_pred EEEEEEEEEECC--E-EEee-eEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcE-EEECCEECCCCchhhCcEEE
Confidence 678999999964 3 8999 99999999999999999999999999999998776544 33333111 01111
Q ss_pred ccCC-CCCCC-chHHHHH-----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------
Q psy9640 99 IVPR-GGENC-VAIDLIV-----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------- 156 (199)
Q Consensus 99 ~~~~-~~~~~-~~~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------- 156 (199)
.+.. ..... ...+.+. +.+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~---~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDE 153 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR---DLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDE 153 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHH---HTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH---HcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 1111 11110 1111110 11111111 1223333345678999999999999999976
Q ss_pred ------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++..+.+.++|.++||.+
T Consensus 154 P~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 189 (348)
T 3d31_A 154 PLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189 (348)
T ss_dssp SSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 667777776666789999999865
No 29
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.88 E-value=4.4e-24 Score=174.93 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=95.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------- 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------- 93 (199)
-++++||++.|++. ++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..++...
T Consensus 24 ~l~i~~l~~~y~~~--~vL~~-vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~ 99 (263)
T 2olj_A 24 MIDVHQLKKSFGSL--EVLKG-INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE-IIIDGINLKAKDTNLNKVR 99 (263)
T ss_dssp SEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEESSSTTCCHHHHH
T ss_pred eEEEEeEEEEECCE--EEEEe-eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcE-EEECCEECCCccccHHHHh
Confidence 48999999999654 79999 99999999999999999999999999999998776543 33332110
Q ss_pred cccccccCC-CCCCC-chHHHH---------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640 94 VHADIIVPR-GGENC-VAIDLI---------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET 156 (199)
Q Consensus 94 ~~~~~~~~~-~~~~~-~~~~~~---------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~ 156 (199)
......... ..... ...+.+ .+.+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 100 ~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~ 176 (263)
T 2olj_A 100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLD---KVGLKDKAHAYPDSLSGGQAQRVAIARALAM 176 (263)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHH---HTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HCCCchHhcCChhhCCHHHHHHHHHHHHHHC
Confidence 001111111 11111 011111 111111111 1122222344677999999999999999976
Q ss_pred ---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.... +.++|.++||.+
T Consensus 177 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~ 220 (263)
T 2olj_A 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMG 220 (263)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHH
Confidence 55556555444 788899999854
No 30
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.88 E-value=1e-23 Score=172.10 Aligned_cols=57 Identities=23% Similarity=0.171 Sum_probs=51.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~ 84 (199)
-++++|++++|++. ++|++ +||++++|++++|+||||||||||+++|+|++.|..+.
T Consensus 7 ~l~i~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~ 63 (257)
T 1g6h_A 7 ILRTENIVKYFGEF--KALDG-VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR 63 (257)
T ss_dssp EEEEEEEEEEETTE--EEEEE-ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred EEEEeeeEEEECCE--eeEee-eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 38999999999754 79999 99999999999999999999999999999998775433
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.88 E-value=9.9e-24 Score=167.93 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=94.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----ccccccc-
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----RVHADII- 99 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----~~~~~~~- 99 (199)
.|+++|++++|++ ++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++.. +......
T Consensus 10 ~l~~~~ls~~y~~---~il~~-vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 10 KLEIRDLSVGYDK---PVLER-ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE-IIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp EEEEEEEEEESSS---EEEEE-EEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEEGGGGGGGEEEEC
T ss_pred eEEEEEEEEEeCC---eEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEhhhhcCcEEEEe
Confidence 4889999999964 69999 99999999999999999999999999999988776543 3333211 0111111
Q ss_pred cCCCCCCCch-HHHHH------------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------
Q psy9640 100 VPRGGENCVA-IDLIV------------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------- 156 (199)
Q Consensus 100 ~~~~~~~~~~-~~~~~------------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------- 156 (199)
.........+ .+.+. +.+.+.+. ...+... +..+.+|||||+||++||||++.
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~---~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEP 160 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE---SVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP 160 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHH---HTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEEST
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHH---HcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 1111111101 11110 01111111 1122222 34577999999999999999975
Q ss_pred -----------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 157 -----------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 157 -----------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+.+.+.+.... +.++|.++||.+..
T Consensus 161 ts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 161 VVAIDEDSKHKVLKSILEILKE-KGIVIISSREELSY 196 (214)
T ss_dssp TTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCCTT
T ss_pred CcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHH
Confidence 44555554332 67889999998764
No 32
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.87 E-value=5.3e-24 Score=174.33 Aligned_cols=148 Identities=13% Similarity=0.063 Sum_probs=95.0
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----------
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------- 93 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------- 93 (199)
-++++||+++|++. ++|++ +||++++|++++|+||||||||||+++|+|++.|..+.+ ..++...
T Consensus 6 ~l~i~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 6 KLHVIDLHKRYGGH--EVLKG-VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI-IVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp CEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEECCEEECTTSSEE
T ss_pred eEEEeeEEEEECCE--EEEEe-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEEcccccccccccc
Confidence 48999999999654 79999 999999999999999999999999999999987765443 3322110
Q ss_pred -----------cccccccCC-CCCCC-chHHHH---------------HHHHHHHHhcCceeecCCc-eeeecceecCCe
Q psy9640 94 -----------VHADIIVPR-GGENC-VAIDLI---------------VQHIHSQLQAGVSVDMPQG-YTYEGKRCAVSK 144 (199)
Q Consensus 94 -----------~~~~~~~~~-~~~~~-~~~~~~---------------~~~l~~~~~~~~~~~~~~~-~~~~g~~lSgGq 144 (199)
......... ..... ...+.+ .+.+.+.+. .+.+... .+..+.+|||||
T Consensus 82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~~LSgGq 158 (262)
T 1b0u_A 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA---KVGIDERAQGKYPVHLSGGQ 158 (262)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---HTTCCHHHHTSCGGGSCHHH
T ss_pred ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHH---HcCCCchhhcCCcccCCHHH
Confidence 001111111 11111 011111 011111111 1122222 344677999999
Q ss_pred eeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 145 ICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 145 ~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+|||+||||++. +.+.+.++... +.++|.++||.+
T Consensus 159 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~ 214 (262)
T 1b0u_A 159 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMG 214 (262)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 999999999976 55555555444 778899999854
No 33
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.87 E-value=1.2e-23 Score=171.68 Aligned_cols=150 Identities=11% Similarity=0.081 Sum_probs=95.3
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------c
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------V 94 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~ 94 (199)
+..++++||+++|.+. ++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..++... .
T Consensus 13 ~~~l~i~~l~~~y~~~--~vl~~-vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~~~~~~~~~~~ 88 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKK--EILKG-ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI-VTVFGKNVVEEPHEVRK 88 (256)
T ss_dssp -CCEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEETTTCHHHHHT
T ss_pred CCeEEEEEEEEEECCE--EEEEe-eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCccHHHHhh
Confidence 4569999999999654 79999 99999999999999999999999999999998776543 33332110 0
Q ss_pred ccccc-cCCCCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640 95 HADII-VPRGGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 95 ~~~~~-~~~~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
..... .........+ .+.+ .+.+.+.+. .+.+....+..+.+|||||+|||+||||++.
T Consensus 89 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 165 (256)
T 1vpl_A 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE---IAGLGEKIKDRVSTYSKGMVRKLLIARALMVNP 165 (256)
T ss_dssp TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 01111 1111111101 1111 011111111 1223233344677999999999999999976
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++... +.++|.++||.+
T Consensus 166 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~ 207 (256)
T 1vpl_A 166 RLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNML 207 (256)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHH
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHH
Confidence 45555555333 678899999854
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.87 E-value=3.1e-24 Score=172.41 Aligned_cols=153 Identities=14% Similarity=0.058 Sum_probs=91.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee--------eecccchhcccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT--------LLSMDSFYRVHA 96 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~--------~i~~d~~~~~~~ 96 (199)
.++++||+++|+...+++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +++++.......
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~t 84 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKD-INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGT 84 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEE-EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBC
T ss_pred eEEEEEEEEEeCCCCceeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCC
Confidence 489999999996433579999 99999999999999999999999999999998776433 223322110000
Q ss_pred ccccCCCCCCCchHHHHHHHHHHHHhc-CceeecCCcee----eecceecCCeeeeeeEEeccch---------------
Q psy9640 97 DIIVPRGGENCVAIDLIVQHIHSQLQA-GVSVDMPQGYT----YEGKRCAVSKICGVSILRAGET--------------- 156 (199)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~----~~g~~lSgGq~QrvaiaRA~~~--------------- 156 (199)
-...-.... ........+.+ +.... .....+|.+.+ ..+.+|||||+|||+||||++.
T Consensus 85 v~enl~~~~-~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD 162 (229)
T 2pze_A 85 IKENIIFGV-SYDEYRYRSVI-KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 162 (229)
T ss_dssp HHHHHHTTS-CCCHHHHHHHH-HHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSC
T ss_pred HHHHhhccC-CcChHHHHHHH-HHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCC
Confidence 000000000 00011111111 11110 01111232222 1357899999999999999975
Q ss_pred --hHHHHHhh-ccc--cceeEEEEEeCCC
Q psy9640 157 --MEQAVHDV-CKD--IRIGKILIQTNKA 180 (199)
Q Consensus 157 --~~~~l~~~-~p~--~~~~~~~~~~~~~ 180 (199)
....+.+. ... .+.++|.++||.+
T Consensus 163 ~~~~~~i~~~l~~~~~~~~tvi~vtH~~~ 191 (229)
T 2pze_A 163 VLTEKEIFESCVCKLMANKTRILVTSKME 191 (229)
T ss_dssp HHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence 33334332 211 2568899999864
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.87 E-value=4.2e-24 Score=172.50 Aligned_cols=152 Identities=13% Similarity=0.143 Sum_probs=93.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe--------eeeecccchhcccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW--------VTLLSMDSFYRVHA 96 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~--------~~~i~~d~~~~~~~ 96 (199)
-++++||++.|++..+++|++ +||++++|++++|+||||||||||+++|+|++.|.. +++++++.......
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~t 81 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNG-ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDS 81 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEE-EEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEE
T ss_pred eEEEEEEEEEeCCCCCceeee-eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcC
Confidence 478999999997433479999 999999999999999999999999999999886543 23334432211000
Q ss_pred ---ccccCCCCCCCchHHHHHHHHHHHHhcCcee-ecCCc----eeeecceecCCeeeeeeEEeccch------------
Q psy9640 97 ---DIIVPRGGENCVAIDLIVQHIHSQLQAGVSV-DMPQG----YTYEGKRCAVSKICGVSILRAGET------------ 156 (199)
Q Consensus 97 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~----~~~~g~~lSgGq~QrvaiaRA~~~------------ 156 (199)
.+..... ......+.+ + +.......+ ..|.+ .+..+.+|||||+|||+||||++.
T Consensus 82 v~enl~~~~~-~~~~~~~~~---~-~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 156 (237)
T 2cbz_A 82 LRENILFGCQ-LEEPYYRSV---I-QACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156 (237)
T ss_dssp HHHHHHTTSC-CCTTHHHHH---H-HHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred HHHHhhCccc-cCHHHHHHH---H-HHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 0001000 011111111 1 111110011 12222 123567999999999999999975
Q ss_pred -----hHHHHHhhcc-----ccceeEEEEEeCCCCC
Q psy9640 157 -----MEQAVHDVCK-----DIRIGKILIQTNKATD 182 (199)
Q Consensus 157 -----~~~~l~~~~p-----~~~~~~~~~~~~~~~~ 182 (199)
....+.+.+- ..+.++|.++||.+..
T Consensus 157 ~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~ 192 (237)
T 2cbz_A 157 AVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL 192 (237)
T ss_dssp TSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG
T ss_pred ccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH
Confidence 2333333331 1257889999987653
No 36
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.87 E-value=1.4e-23 Score=171.10 Aligned_cols=145 Identities=10% Similarity=0.034 Sum_probs=94.6
Q ss_pred cccccceeecc-ccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee--------eeecccchhccc-
Q psy9640 26 RDLEGVIKQYV-NMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV--------TLLSMDSFYRVH- 95 (199)
Q Consensus 26 i~l~nvs~~y~-~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~--------~~i~~d~~~~~~- 95 (199)
++++|+++.|+ +. ++|++ +||++++|++++|+||||||||||+++|+|++.|..+ ++++++......
T Consensus 5 l~i~~l~~~y~~~~--~vl~~-isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~ 81 (253)
T 2nq2_C 5 LSVENLGFYYQAEN--FLFQQ-LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAY 81 (253)
T ss_dssp EEEEEEEEEETTTT--EEEEE-EEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCC
T ss_pred EEEeeEEEEeCCCC--eEEEE-EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCC
Confidence 78999999997 43 79999 9999999999999999999999999999999877643 334443211100
Q ss_pred ---cccccCC----CCC--CCch-HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------
Q psy9640 96 ---ADIIVPR----GGE--NCVA-IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------- 156 (199)
Q Consensus 96 ---~~~~~~~----~~~--~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------- 156 (199)
..+.... ... .... .+.+.+.+ +.+ .+....+..+.+|||||+|||+||||++.
T Consensus 82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~------~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE 154 (253)
T 2nq2_C 82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQAL-DYL------NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDE 154 (253)
T ss_dssp BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHH-HHT------TCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred CHHHHHHHhhhhhcccccCCCHHHHHHHHHHH-HHc------CChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0000100 000 0111 12222223 222 22222234567999999999999999975
Q ss_pred ------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.....+.++|.++||.+
T Consensus 155 Pts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 190 (253)
T 2nq2_C 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190 (253)
T ss_dssp SSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 455555554433678899999864
No 37
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=3.4e-23 Score=167.45 Aligned_cols=148 Identities=12% Similarity=0.082 Sum_probs=92.4
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----------cc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----------RV 94 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----------~~ 94 (199)
-++++||+++|++. ++|++ +||++++|++++|+||||||||||+++|+|++.|..+.+ ..++.. +.
T Consensus 6 ~l~~~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 6 VLEVQSLHVYYGAI--HAIKG-IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI-IFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTCCHHHHHHT
T ss_pred eEEEEeEEEEECCe--eEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCCHHHHHhC
Confidence 38899999999764 79999 999999999999999999999999999999887764433 222210 00
Q ss_pred ccccc-cCCCCCCC--------------chHHHHHHHHHHHHhcCcee-ecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640 95 HADII-VPRGGENC--------------VAIDLIVQHIHSQLQAGVSV-DMPQGYTYEGKRCAVSKICGVSILRAGET-- 156 (199)
Q Consensus 95 ~~~~~-~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-- 156 (199)
..... ........ ...+...+.+.+.+. .+ .+....+..+.+|||||+|||+||||++.
T Consensus 82 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~---~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 158 (240)
T 1ji0_A 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS---LFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHH---HCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHH---HcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 00111 11000000 000011111111111 01 12222234567899999999999999976
Q ss_pred -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+... -+.++|.++||.+
T Consensus 159 ~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNAL 200 (240)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHH
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH
Confidence 4455555433 3678899999864
No 38
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.86 E-value=2.8e-23 Score=170.30 Aligned_cols=147 Identities=14% Similarity=0.011 Sum_probs=93.9
Q ss_pred cccccceeeccccc---cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh------cccc
Q psy9640 26 RDLEGVIKQYVNMV---KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY------RVHA 96 (199)
Q Consensus 26 i~l~nvs~~y~~~~---~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~------~~~~ 96 (199)
++++|++++|+... +++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++.. +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~-vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~-I~~~g~~~~~~~~~~~i 80 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALEN-VSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD-VLYDGERKKGYEIRRNI 80 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEE-EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEECCHHHHGGGE
T ss_pred EEEEEEEEEecCCCccccceeee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE-EEECCEECchHHhhhhE
Confidence 68999999996211 479999 99999999999999999999999999999988765433 3222210 0000
Q ss_pred ccccCC---CCC----------------C-CchHHHHHHHHHHHHhcCceeecC--CceeeecceecCCeeeeeeEEecc
Q psy9640 97 DIIVPR---GGE----------------N-CVAIDLIVQHIHSQLQAGVSVDMP--QGYTYEGKRCAVSKICGVSILRAG 154 (199)
Q Consensus 97 ~~~~~~---~~~----------------~-~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~g~~lSgGq~QrvaiaRA~ 154 (199)
...... ... . ....+.+.+.+ +.+ .+. ...+..+.+|||||+|||+||||+
T Consensus 81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l-~~~------gl~~~~~~~~~~~~LSgGq~qRv~lAraL 153 (266)
T 2yz2_A 81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAM-EFV------GLDFDSFKDRVPFFLSGGEKRRVAIASVI 153 (266)
T ss_dssp EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHH-HHT------TCCHHHHTTCCGGGSCHHHHHHHHHHHHH
T ss_pred EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHH-HHc------CcCCcccccCChhhCCHHHHHHHHHHHHH
Confidence 000000 000 0 00111222222 221 222 222345678999999999999999
Q ss_pred ch---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
+. +.+.+.+.... +.++|.++||.+..
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETV 201 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTT
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHH
Confidence 76 55555555444 67889999987654
No 39
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.86 E-value=1.7e-23 Score=202.52 Aligned_cols=154 Identities=12% Similarity=0.110 Sum_probs=105.7
Q ss_pred ccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------
Q psy9640 23 ARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV------- 94 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~------- 94 (199)
...++++||+|+|++. ..++|+| +||++++|++++|+||||||||||+++|+|++.+..+ .+..|+....
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~-isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G-~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKG-LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG-MVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEE-EEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEE-EEEETTEEGGGSCHHHH
T ss_pred CCeEEEEEEEEEcCCCCCCcceec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEHHhCCHHHH
Confidence 4579999999999763 3579999 9999999999999999999999999999999887643 3333332110
Q ss_pred --ccc-cccCCCC------------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccc
Q psy9640 95 --HAD-IIVPRGG------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGE 155 (199)
Q Consensus 95 --~~~-~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~ 155 (199)
... ..+.... ......+++.++++..........+|.++++ .|.+|||||||||+||||++
T Consensus 463 r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp HHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred HhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 000 1111100 0112345565655443333445577888776 57899999999999999997
Q ss_pred h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
. +.+.+..... +.++|.|+|+-.
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~ 586 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIVIAHRLS 586 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT--TSEEEEECSCHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH
Confidence 5 4444444444 457799999644
No 40
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.85 E-value=7.3e-23 Score=198.08 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=109.0
Q ss_pred ccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------
Q psy9640 23 ARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV------- 94 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~------- 94 (199)
...++++||+|+|++. ..++|++ +||++++|+++||+||||||||||+++|+|++.|..+. +..|+....
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~-vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~-I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQG-LSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS-VFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSS-CCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEE-EESSSSCTTSSCHHHH
T ss_pred CCcEEEEEEEEECCCCCCCeeecc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCEEcccCCHHHH
Confidence 3469999999999754 3479999 99999999999999999999999999999988775433 333332110
Q ss_pred ---ccccccCCC-------------CC-CCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEec
Q psy9640 95 ---HADIIVPRG-------------GE-NCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRA 153 (199)
Q Consensus 95 ---~~~~~~~~~-------------~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA 153 (199)
..-.++... .. .....+++.++++..........+|.++++ .|.+|||||||||+||||
T Consensus 1106 r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp TTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred HhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 000111110 00 112345566666444444455567888887 578999999999999999
Q ss_pred cch---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640 154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKATD 182 (199)
Q Consensus 154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~ 182 (199)
++. +.+.+.+... +.++|.|+||-++.
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~--~~tvi~isH~l~~i 1233 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKARE--GRTCIVIAHRLSTI 1233 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSS--SSCEEEECSCTTGG
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCC--CCEEEEEecCHHHH
Confidence 975 5555555444 45779999988764
No 41
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.85 E-value=7.8e-23 Score=166.25 Aligned_cols=149 Identities=9% Similarity=0.026 Sum_probs=88.5
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc-CCCeeeeecccchhcc--------c-
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL-NVPWVTLLSMDSFYRV--------H- 95 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l-~~~~~~~i~~d~~~~~--------~- 95 (199)
++++||+++|++. ++|++ +||++++|++++|+||||||||||+++|+|+. .++..|.+..++.... .
T Consensus 4 l~~~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDGE--TILKG-VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECCE--EEEec-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 7899999999754 79999 99999999999999999999999999999972 2344455544432110 0
Q ss_pred -cccc-cCCCCCCCch-HHHHH-----------------HHHHHHHhcCceeecC-Cceeeecce-ecCCeeeeeeEEec
Q psy9640 96 -ADII-VPRGGENCVA-IDLIV-----------------QHIHSQLQAGVSVDMP-QGYTYEGKR-CAVSKICGVSILRA 153 (199)
Q Consensus 96 -~~~~-~~~~~~~~~~-~~~~~-----------------~~l~~~~~~~~~~~~~-~~~~~~g~~-lSgGq~QrvaiaRA 153 (199)
.... .......... .+.+. +.+.+.+. .+.++ ...+..+.+ |||||+|||+||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~~~LSgGqkQrv~iAra 157 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALE---LLDWDESYLSRYLNEGFSGGEKKRNEILQL 157 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH---HHTCCGGGGGSBTTCC----HHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHH---HcCCChhHhcCCcccCCCHHHHHHHHHHHH
Confidence 0011 1111111111 11110 01101110 11221 222334567 99999999999999
Q ss_pred cch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
++. +.+.+.+... .+.++|.++||.+.
T Consensus 158 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 158 LVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRI 205 (250)
T ss_dssp HHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGG
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHH
Confidence 975 4555555533 36788999998654
No 42
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.85 E-value=1.1e-22 Score=164.57 Aligned_cols=145 Identities=8% Similarity=-0.042 Sum_probs=90.6
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADI 98 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~ 98 (199)
++++|++++|++ +|++ +||++++ ++++|+||||||||||+++|+|++.|..+. +..++... .....
T Consensus 2 l~~~~l~~~y~~----~l~~-isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLN-VDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGE-VRLNGADITPLPPERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEE-EEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCTTTSCCBC
T ss_pred EEEEEEEEEeCC----EEee-eEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCcCchhhCcEEE
Confidence 678999999953 4899 9999999 999999999999999999999998776543 33332110 00011
Q ss_pred ccCC-CCCCCch-------------HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--------
Q psy9640 99 IVPR-GGENCVA-------------IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-------- 156 (199)
Q Consensus 99 ~~~~-~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-------- 156 (199)
.... ......+ .....+.+.+.+.. +.+....+..+.+|||||+||++||||++.
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~---~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 151 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK---LGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHT---TTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHH---cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1000 0000000 00001112122211 122222344577999999999999999976
Q ss_pred -------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.....+.++|.++||.+
T Consensus 152 EPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188 (240)
T ss_dssp STTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 455555554433677899999854
No 43
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.85 E-value=6.4e-23 Score=169.31 Aligned_cols=57 Identities=14% Similarity=-0.007 Sum_probs=51.6
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~ 84 (199)
-++++||++.|++. ++|++ +||++++|++++|+||||||||||+++|+|++.|..+.
T Consensus 21 ~l~~~~l~~~y~~~--~vL~~-isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~ 77 (279)
T 2ihy_A 21 LIQLDQIGRMKQGK--TILKK-ISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT 77 (279)
T ss_dssp EEEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred eEEEEeEEEEECCE--EEEEe-eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeE
Confidence 48999999999764 79999 99999999999999999999999999999998776543
No 44
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.84 E-value=2.2e-22 Score=164.75 Aligned_cols=144 Identities=13% Similarity=0.038 Sum_probs=89.5
Q ss_pred cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------cccc
Q psy9640 26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------VHAD 97 (199)
Q Consensus 26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------~~~~ 97 (199)
++++|++++|++. .+++|++ +||+++ |++++|+||||||||||+++|+|++ |..+ .+..++... ....
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~-vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G-~I~~~g~~~~~~~~~~~i~ 77 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLEN-INLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSG-NIFINGMEVRKIRNYIRYS 77 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEE-EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEE-EEEETTEEGGGCSCCTTEE
T ss_pred EEEEEEEEEeCCCCccceeEEe-eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCc-EEEECCEECcchHHhhheE
Confidence 6789999999751 1379999 999999 9999999999999999999999998 6544 443333110 0011
Q ss_pred --cccCCCCCCCchHHHHH----------HHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEEeccch--------
Q psy9640 98 --IIVPRGGENCVAIDLIV----------QHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSILRAGET-------- 156 (199)
Q Consensus 98 --~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~QrvaiaRA~~~-------- 156 (199)
+...... .....+.+. +.+.+.+. ...+. ...+..+.+|||||+||++||||++.
T Consensus 78 ~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD 153 (263)
T 2pjz_A 78 TNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLK---ALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLD 153 (263)
T ss_dssp ECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHH---HTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred EEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHH---HcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1111111 111111111 01111111 11222 22344677999999999999999976
Q ss_pred -------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640 157 -------------MEQAVHDVCKDIRIGKILIQTNKAT 181 (199)
Q Consensus 157 -------------~~~~l~~~~p~~~~~~~~~~~~~~~ 181 (199)
+.+.+.+.. . ++|.++||.+.
T Consensus 154 EPts~LD~~~~~~l~~~L~~~~-~---tviivtHd~~~ 187 (263)
T 2pjz_A 154 EPFENVDAARRHVISRYIKEYG-K---EGILVTHELDM 187 (263)
T ss_dssp CTTTTCCHHHHHHHHHHHHHSC-S---EEEEEESCGGG
T ss_pred CCccccCHHHHHHHHHHHHHhc-C---cEEEEEcCHHH
Confidence 334444332 2 88999998654
No 45
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.84 E-value=1.8e-22 Score=165.70 Aligned_cols=63 Identities=11% Similarity=0.074 Sum_probs=52.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC-CCeeeeecccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN-VPWVTLLSMDS 90 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~-~~~~~~i~~d~ 90 (199)
-++++||+++|.+. ++|++ +||++++|++++|+||||||||||+++|+|++. ++..|.+..++
T Consensus 20 ~l~~~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g 83 (267)
T 2zu0_C 20 MLSIKDLHVSVEDK--AILRG-LSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 83 (267)
T ss_dssp CEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred eEEEEeEEEEECCE--EEEEe-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence 48999999999654 79999 999999999999999999999999999999852 34445554443
No 46
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.82 E-value=8e-22 Score=160.28 Aligned_cols=138 Identities=7% Similarity=0.103 Sum_probs=89.0
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------cc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------HA 96 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~~ 96 (199)
++++|++++ ++|++ +||++++|++++|+||||||||||+++|+|++.+. |.+..++.... ..
T Consensus 5 l~~~~l~~~------~vl~~-vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 5 MQLQDVAES------TRLGP-LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEET------TTEEE-EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEceEEE------EEEee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEECCEECCcCCHHHHhceE
Confidence 788999987 58999 99999999999999999999999999999998776 55555432110 00
Q ss_pred ccc-cCCCCCCC-c-------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640 97 DII-VPRGGENC-V-------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----- 156 (199)
Q Consensus 97 ~~~-~~~~~~~~-~-------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----- 156 (199)
... ........ . ..+.+.+.+ +.+ .+....+..+.+|||||+|||+||||++.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l-~~~------~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~ 148 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVA-GAL------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQA 148 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHH-HHT------TCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTT
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHH-HHc------CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcC
Confidence 111 11111000 0 111122222 211 22222234577999999999999999975
Q ss_pred -----------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -----------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -----------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.+.... +.++|.++||.+
T Consensus 149 ~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~ 194 (249)
T 2qi9_C 149 NPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLN 194 (249)
T ss_dssp CTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred CCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 33344444333 678899999855
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.81 E-value=5.5e-22 Score=164.56 Aligned_cols=149 Identities=13% Similarity=0.073 Sum_probs=77.3
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee--------eeecccchhccc
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV--------TLLSMDSFYRVH 95 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~--------~~i~~d~~~~~~ 95 (199)
..++++||++.+ +++|++ +||++++|++++|+||||||||||+++|+|++.+..+ ++++++......
T Consensus 39 ~~l~~~~l~~~~----~~vl~~-isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~ 113 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKD-INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPG 113 (290)
T ss_dssp -----------C----CCSEEE-EEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSS
T ss_pred ceEEEEEEEEcC----ceEEEe-eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcc
Confidence 359999999863 379999 9999999999999999999999999999998876432 223332211000
Q ss_pred cccccCCCCCCCchHHHHHHHHHHHHhc-CceeecCCcee----eecceecCCeeeeeeEEeccch--------------
Q psy9640 96 ADIIVPRGGENCVAIDLIVQHIHSQLQA-GVSVDMPQGYT----YEGKRCAVSKICGVSILRAGET-------------- 156 (199)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~----~~g~~lSgGq~QrvaiaRA~~~-------------- 156 (199)
.-........ .......+.+ ..... .....++.+++ ..+.+|||||+||++||||++.
T Consensus 114 tv~enl~~~~--~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~L 190 (290)
T 2bbs_A 114 TIKENIIGVS--YDEYRYRSVI-KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (290)
T ss_dssp BHHHHHHTTC--CCHHHHHHHH-HHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC
T ss_pred cHHHHhhCcc--cchHHHHHHH-HHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccC
Confidence 0000000000 0001111111 11110 01112232222 2457899999999999999975
Q ss_pred ---hHHHHHhh-ccc--cceeEEEEEeCCC
Q psy9640 157 ---MEQAVHDV-CKD--IRIGKILIQTNKA 180 (199)
Q Consensus 157 ---~~~~l~~~-~p~--~~~~~~~~~~~~~ 180 (199)
....+.+. +.. .+.++|.++||.+
T Consensus 191 D~~~~~~i~~~ll~~~~~~~tviivtHd~~ 220 (290)
T 2bbs_A 191 DVLTEKEIFESCVCKLMANKTRILVTSKME 220 (290)
T ss_dssp CHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 33333332 111 2568899999854
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.75 E-value=1.9e-19 Score=160.74 Aligned_cols=145 Identities=13% Similarity=0.065 Sum_probs=90.2
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGG 104 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~ 104 (199)
-++++|+++.|.+. .|+. ++|++.+|++++|+||||||||||+++|+|.+.+..+.+. ... ....+......
T Consensus 287 ~l~~~~l~~~~~~~---~l~~-~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~-~~~---~i~~v~Q~~~~ 358 (538)
T 1yqt_A 287 LVTYPRLVKDYGSF---RLEV-EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE-WDL---TVAYKPQYIKA 358 (538)
T ss_dssp EEEECCEEEEETTE---EEEE-CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC-CCC---CEEEECSSCCC
T ss_pred EEEEeeEEEEECCE---EEEe-CccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECc---eEEEEecCCcC
Confidence 38899999998642 5788 8999999999999999999999999999998876543221 110 00001111110
Q ss_pred CCCchHHHHHH-----------HHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------------
Q psy9640 105 ENCVAIDLIVQ-----------HIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----------------- 156 (199)
Q Consensus 105 ~~~~~~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----------------- 156 (199)
.......+... .+...+ ....+....+..+.+|||||+|||+||||++.
T Consensus 359 ~~~~tv~~~~~~~~~~~~~~~~~~~~~l---~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~ 435 (538)
T 1yqt_A 359 DYEGTVYELLSKIDASKLNSNFYKTELL---KPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 435 (538)
T ss_dssp CCSSBHHHHHHHHHHHHHTCHHHHHHTT---TTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred CCCCcHHHHHHhhhccCCCHHHHHHHHH---HHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 01111111111 111111 11222222344677999999999999999975
Q ss_pred ----hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ----MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ----~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++..+.+.++|+|+||-+
T Consensus 436 ~~~~i~~~l~~l~~~~g~tvi~vsHd~~ 463 (538)
T 1yqt_A 436 QRLAVSRAIRHLMEKNEKTALVVEHDVL 463 (538)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 455555554344678899999855
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.75 E-value=1.8e-19 Score=162.74 Aligned_cols=145 Identities=14% Similarity=0.077 Sum_probs=90.0
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGG 104 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~ 104 (199)
-++++|+++.|.+. .|+. +++++.+|++++|+||||||||||+++|+|++.+..+.+. .+. ....+......
T Consensus 357 ~l~~~~l~~~~~~~---~l~~-~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~-~~~---~i~~v~Q~~~~ 428 (607)
T 3bk7_A 357 LVEYPRLVKDYGSF---KLEV-EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE-WDL---TVAYKPQYIKA 428 (607)
T ss_dssp EEEECCEEEECSSC---EEEE-CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCC-CCC---CEEEECSSCCC
T ss_pred EEEEeceEEEecce---EEEe-cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-Eee---EEEEEecCccC
Confidence 48899999999643 5788 8999999999999999999999999999998876543221 110 00001111100
Q ss_pred CCCch-HHHHH----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------------
Q psy9640 105 ENCVA-IDLIV----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----------------- 156 (199)
Q Consensus 105 ~~~~~-~~~~~----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----------------- 156 (199)
....+ .+.+. +.+.+.+. .+.+....+..+.+|||||+|||+||||+..
T Consensus 429 ~~~~tv~e~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~ 505 (607)
T 3bk7_A 429 EYEGTVYELLSKIDSSKLNSNFYKTELLK---PLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 505 (607)
T ss_dssp CCSSBHHHHHHHHHHHHHHCHHHHHHTHH---HHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred CCCCcHHHHHHhhhccCCCHHHHHHHHHH---HcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHH
Confidence 00001 11110 00101111 1222233344677999999999999999975
Q ss_pred ----hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 ----MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 ----~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++....+.++|+++||-+
T Consensus 506 ~~~~l~~~l~~l~~~~g~tvi~vsHd~~ 533 (607)
T 3bk7_A 506 QRLAVSRAIRHLMEKNEKTALVVEHDVL 533 (607)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 445555544344678899999854
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.75 E-value=2.8e-19 Score=159.55 Aligned_cols=146 Identities=11% Similarity=0.050 Sum_probs=91.2
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGG 104 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~ 104 (199)
.++++|+++.|.+. .+.. +++++++|++++|+||||||||||+++|+|++.+..+.+. .++.... ........
T Consensus 269 ~l~~~~l~~~~~~~---~l~~-~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~~~~i~--~~~q~~~~ 341 (538)
T 3ozx_A 269 KMKWTKIIKKLGDF---QLVV-DNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT-PEKQILS--YKPQRIFP 341 (538)
T ss_dssp EEEECCEEEEETTE---EEEE-CCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE-SSCCCEE--EECSSCCC
T ss_pred eEEEcceEEEECCE---EEEe-ccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCeeeE--eechhccc
Confidence 47889999998653 4677 7999999999999999999999999999999887654332 2111000 00000000
Q ss_pred CCCch-HHHHHH-----------HHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------------
Q psy9640 105 ENCVA-IDLIVQ-----------HIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------- 156 (199)
Q Consensus 105 ~~~~~-~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------- 156 (199)
..... .+.+.. .+.+.+ ..+.+....+..+.+|||||+|||+||||+..
T Consensus 342 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~l---~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~ 418 (538)
T 3ozx_A 342 NYDGTVQQYLENASKDALSTSSWFFEEVT---KRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDV 418 (538)
T ss_dssp CCSSBHHHHHHHHCSSTTCTTSHHHHHTT---TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred ccCCCHHHHHHHhhhhccchhHHHHHHHH---HHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 00000 111100 010111 11122222344678999999999999999965
Q ss_pred -----hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -----MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -----~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++..+.+.++|+|+||-+
T Consensus 419 ~~~~~i~~~l~~l~~~~g~tvi~vsHdl~ 447 (538)
T 3ozx_A 419 EERYIVAKAIKRVTRERKAVTFIIDHDLS 447 (538)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 555666665555788899999865
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.9e-19 Score=159.86 Aligned_cols=143 Identities=10% Similarity=0.079 Sum_probs=88.8
Q ss_pred ccceeeccccccccccccccCCCCCC-----eEEEEecCCCCcHHHHHHHHHHHcCCCee--------eeecccchhccc
Q psy9640 29 EGVIKQYVNMVKPAFSTFIAPSMVEP-----FVIGICGGSASGKTTVATKIIESLNVPWV--------TLLSMDSFYRVH 95 (199)
Q Consensus 29 ~nvs~~y~~~~~~~l~~~vsl~i~~g-----~iv~IvG~SGsGKSTLl~~L~~~l~~~~~--------~~i~~d~~~~~~ 95 (199)
+++++.|++. ..++++ ++|++.+| ++++|+||||||||||+++|+|++.+..+ ++++++......
T Consensus 350 ~~~~~~y~~~-~~~l~~-vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGD-FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp SSSCCEECCE-EEECSS-CEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCC
T ss_pred cceeEEecCc-ccccCc-eEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCC
Confidence 6788888754 357899 99999998 78999999999999999999999877643 223322110000
Q ss_pred ---cccccCCCCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------------
Q psy9640 96 ---ADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------- 156 (199)
Q Consensus 96 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------- 156 (199)
...................+.+ +.+ .+....+..+.+|||||+|||+||||+..
T Consensus 428 ~tv~e~~~~~~~~~~~~~~~~~~~l-~~l------~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~ 500 (608)
T 3j16_B 428 GTVRQLFFKKIRGQFLNPQFQTDVV-KPL------RIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500 (608)
T ss_dssp SBHHHHHHHHCSSTTTSHHHHHHTH-HHH------TSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCH
T ss_pred ccHHHHHHHHhhcccccHHHHHHHH-HHc------CChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 0000000000000111111112 222 22222344567899999999999999975
Q ss_pred -----hHHHHHhhccccceeEEEEEeCCC
Q psy9640 157 -----MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 157 -----~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
+.+.+.++..+.+.++|+|+||-+
T Consensus 501 ~~~~~i~~ll~~l~~~~g~tviivtHdl~ 529 (608)
T 3j16_B 501 EQRIICSKVIRRFILHNKKTAFIVEHDFI 529 (608)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 445555655555788899999854
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.72 E-value=1.1e-18 Score=157.65 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=46.4
Q ss_pred ccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640 29 EGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84 (199)
Q Consensus 29 ~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~ 84 (199)
+|++++|++. ..++++ +| ++++|++++|+||||||||||+++|+|.+.|..+.
T Consensus 95 ~~ls~~yg~~-~~~l~~-vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 95 EDCVHRYGVN-AFVLYR-LP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp GSEEEECSTT-CCEEEC-CC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCeEEEECCC-CeeeCC-CC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 8999999654 248999 99 99999999999999999999999999998776443
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.72 E-value=8.7e-19 Score=156.43 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=45.7
Q ss_pred ccc-ccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 26 RDL-EGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 26 i~l-~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
.++ +||+++|++. ..++.+ +| ++++|++++|+||||||||||+++|+|.+.|..+
T Consensus 21 ~~~~~~ls~~yg~~-~~~l~~-vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G 76 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-AFVLYR-LP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLC 76 (538)
T ss_dssp ---CCCEEEECSTT-CCEEEC-CC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred hhHhcCcEEEECCc-cccccC-cC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 455 6899999654 258999 99 9999999999999999999999999998876543
No 54
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.72 E-value=9.2e-19 Score=145.95 Aligned_cols=115 Identities=9% Similarity=0.060 Sum_probs=74.7
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccC-CC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP-RG 103 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~-~~ 103 (199)
.|+++||+|.|+ .++|++ +++++++|++++|+||||||||||+++|+|++.......++++..... ..... +.
T Consensus 101 ~i~~~~vs~~y~---~~vL~~-vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~~~v~q~~~lf~--~ti~~~ni 174 (305)
T 2v9p_A 101 FFNYQNIELITF---INALKL-WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWL--ASLADTRA 174 (305)
T ss_dssp HHHHTTCCHHHH---HHHHHH-HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEECGGGTTSGGGG--GGGTTCSC
T ss_pred eEEEEEEEEEcC---hhhhcc-ceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCceEEEEecCcccccc--ccHHHHhh
Confidence 489999999997 379999 999999999999999999999999999999983222222233322111 11111 11
Q ss_pred CCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccchhH
Q psy9640 104 GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETME 158 (199)
Q Consensus 104 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~ 158 (199)
...+...+.+.+.+ ... +|.+++ |..|||||||| |||++.-+
T Consensus 175 ~~~~~~~~~~~~~i-~~~-------L~~gld--g~~LSgGqkQR---ARAll~~p 216 (305)
T 2v9p_A 175 ALVDDATHACWRYF-DTY-------LRNALD--GYPVSIDRKHK---AAVQIKAP 216 (305)
T ss_dssp EEEEEECHHHHHHH-HHT-------TTGGGG--TCCEECCCSSC---CCCEECCC
T ss_pred ccCccccHHHHHHH-HHH-------hHccCC--ccCcCHHHHHH---HHHHhCCC
Confidence 00011112232323 110 344444 77999999999 99988643
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.71 E-value=1e-18 Score=164.11 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=51.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~ 84 (199)
++++|++++|++..+++|++ +||++.+|++++|+||||||||||+++|+|.+.+..+.
T Consensus 672 L~v~nLs~~Y~g~~~~iL~d-VSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~ 729 (986)
T 2iw3_A 672 VKVTNMEFQYPGTSKPQITD-INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 729 (986)
T ss_dssp EEEEEEEECCTTCSSCSEEE-EEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEE
T ss_pred EEEEeeEEEeCCCCceeeec-cEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 88999999997543579999 99999999999999999999999999999998776543
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.68 E-value=8e-18 Score=151.97 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=42.3
Q ss_pred ccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 29 EGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 29 ~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
+|++++|... ...+++ ++ .+++|++++|+||||||||||+++|+|++.|..+
T Consensus 81 ~~~~~~Y~~~-~~~l~~-l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G 132 (608)
T 3j16_B 81 AHVTHRYSAN-SFKLHR-LP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLG 132 (608)
T ss_dssp TTEEEECSTT-SCEEEC-CC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred CCeEEEECCC-ceeecC-CC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 4788888654 245666 44 6899999999999999999999999999877654
No 57
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.68 E-value=1.3e-17 Score=139.65 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=81.3
Q ss_pred ccCcccccceeeccccccccccccccC-----------------------CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAP-----------------------SMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl-----------------------~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
...|+++||++.|. +++++ +++ .+++|+++||+||||||||||+++|++.+.
T Consensus 41 ~~~i~~~~v~~~y~----p~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 41 GEQIDLLEVEEVYL----PLARL-IHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TCCCCHHHHHHTHH----HHHHH-HHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh----hHHHH-HHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 44699999999994 34444 443 289999999999999999999999999986
Q ss_pred C----Ceeeeecccchhcccccccc---C--CCCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeE
Q psy9640 80 V----PWVTLLSMDSFYRVHADIIV---P--RGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSI 150 (199)
Q Consensus 80 ~----~~~~~i~~d~~~~~~~~~~~---~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrvai 150 (199)
+ ..++++++|+++........ . .+.....+.+.+.+.+ +.+..+. .+....++||||+||+++
T Consensus 116 ~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L-~~l~~~~-------~~~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 116 RWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFV-TSVKSGS-------DYACAPVYSHLHYDIIPG 187 (312)
T ss_dssp TSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHH-HHHHTTC-------SCEEEEEEETTTTEEEEE
T ss_pred ccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHH-HHhCCCc-------ccCCcccCChhhhhhhhh
Confidence 5 35788999887654311111 1 1111122334455555 3332211 122345799999999999
Q ss_pred Eeccch
Q psy9640 151 LRAGET 156 (199)
Q Consensus 151 aRA~~~ 156 (199)
|||++.
T Consensus 188 a~al~~ 193 (312)
T 3aez_A 188 AEQVVR 193 (312)
T ss_dssp EEEEEC
T ss_pred HHHhcc
Confidence 999865
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.65 E-value=1.1e-17 Score=157.19 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=45.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.+...|+++.|++. .+|++ +||++++|++++|+||||||||||+++|+|.
T Consensus 435 ~L~~~~ls~~yg~~--~iL~~-vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 435 DLCNCEFSLAYGAK--ILLNK-TQLRLKRARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred eeEEeeEEEEECCE--EeEec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47777899999764 79999 9999999999999999999999999999963
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.62 E-value=2.5e-17 Score=150.37 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=32.7
Q ss_pred cceeec-cccccccccccccCCCCCCeEEEEecCCCCcHHHHH
Q psy9640 30 GVIKQY-VNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVA 71 (199)
Q Consensus 30 nvs~~y-~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl 71 (199)
|+++.| .+...++|++ |||++++|++++|+||||||||||+
T Consensus 20 ~~~~~~~~~~~~~~L~~-vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 20 HMDKIIVKGARAHNLKN-IDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp --CEEEEEEECSTTCCS-EEEEEETTSEEEEECSTTSSHHHHH
T ss_pred CcceEEEcCCCccceec-cEEEECCCCEEEEECCCCCCHHHHh
Confidence 444444 2223478999 9999999999999999999999997
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.59 E-value=1.2e-16 Score=142.64 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=39.6
Q ss_pred ccceeeccccccccccccccCC-CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640 29 EGVIKQYVNMVKPAFSTFIAPS-MVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84 (199)
Q Consensus 29 ~nvs~~y~~~~~~~l~~~vsl~-i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~ 84 (199)
++++.+|... .++- ..+. +++|+++||+||||||||||+|+|+|.+.|..+.
T Consensus 3 ~~~~~~~~~~---~f~l-~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~ 55 (538)
T 3ozx_A 3 GEVIHRYKVN---GFKL-FGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD 55 (538)
T ss_dssp CCEEEESSTT---SCEE-ECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTC
T ss_pred CCCceecCCC---ceee-cCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 3567788543 3344 3444 4699999999999999999999999998776543
No 61
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.59 E-value=1.1e-16 Score=146.06 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=39.4
Q ss_pred ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640 27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~ 75 (199)
...+..+.+.+....+|++ +||+|++|++++|+||||||||||+++|+
T Consensus 322 ~~~~~~~~~~~~~~~~L~~-vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 322 RPDGRWLEVVGAREHNLKN-VSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp CCCSCEEEEEEECSTTCCS-EEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccceeecCcccccccc-ceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3445556665544578999 99999999999999999999999998764
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.56 E-value=9.9e-18 Score=146.96 Aligned_cols=49 Identities=20% Similarity=0.080 Sum_probs=43.4
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
-++++||++.|+ + +++++++|++++|+||||||||||+|+|+|++.+..
T Consensus 118 mi~~~nl~~~y~--------~-vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~ 166 (460)
T 2npi_A 118 MKYIYNLHFMLE--------K-IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFN 166 (460)
T ss_dssp HHHHHHHHHHHH--------H-HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHH
T ss_pred hhhhhhhhehhh--------c-CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccC
Confidence 488999999884 5 899999999999999999999999999999875443
No 63
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.54 E-value=9e-16 Score=117.36 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=27.1
Q ss_pred ccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640 47 IAPSMVEPFVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~ 75 (199)
+||++++|++++|+||||||||||++++.
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 78999999999999999999999999753
No 64
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.46 E-value=9.9e-14 Score=111.62 Aligned_cols=101 Identities=29% Similarity=0.389 Sum_probs=55.7
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC-------eeeeecccchhccccccc---cCCC---CCC
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP-------WVTLLSMDSFYRVHADII---VPRG---GEN 106 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~-------~~~~i~~d~~~~~~~~~~---~~~~---~~~ 106 (199)
.++|++ +||++++|+++||+||||||||||+++|++.++.. .+++++++.++....... .... ..+
T Consensus 12 ~~~l~~-isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~ 90 (245)
T 2jeo_A 12 DLGTEN-LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDH 90 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTS
T ss_pred ceeecc-eeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCC
Confidence 478999 99999999999999999999999999999987643 355777776654222110 0111 111
Q ss_pred C--chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeE
Q psy9640 107 C--VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSI 150 (199)
Q Consensus 107 ~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrvai 150 (199)
+ .+.+.+.+.+ ..+... .......+|+||+||+++
T Consensus 91 ~~~~~~~~~~~~L-~~l~~~--------~~~~~~~ls~g~~~r~~~ 127 (245)
T 2jeo_A 91 PDAFDNDLMHRTL-KNIVEG--------KTVEVPTYDFVTHSRLPE 127 (245)
T ss_dssp GGGBCHHHHHHHH-HHHHTT--------CCEEECCEETTTTEECSS
T ss_pred cccccHHHHHHHH-HHHHCC--------CCeecccccccccCccCc
Confidence 1 2234444444 222211 122344789999999976
No 65
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.45 E-value=6.2e-14 Score=110.10 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=67.4
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccchhcccccccc-----CCCCCCCchHHHHHHHHHHHHhc
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRVHADIIV-----PRGGENCVAIDLIVQHIHSQLQA 123 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~ 123 (199)
.++|++++|+||||||||||+++|++.+.+ ...+.+++|+++........ .+......+.+.+...+ ..+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~ 97 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLC-HALKH 97 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHH-HHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHH-HHHhc
Confidence 578999999999999999999999999875 36788999987653322111 01111122334444444 44444
Q ss_pred CceeecCCceeeecceecCCeeeeeeEE-eccc
Q psy9640 124 GVSVDMPQGYTYEGKRCAVSKICGVSIL-RAGE 155 (199)
Q Consensus 124 ~~~~~~~~~~~~~g~~lSgGq~Qrvaia-RA~~ 155 (199)
...+..|.+ + .+..+|+||+|+++++ |+++
T Consensus 98 ~~~i~~p~~-d-~~~~~~~g~~~~v~~~~~~~i 128 (208)
T 3c8u_A 98 QERVIYPLF-D-RARDIAIAGAAEVGPECRVAI 128 (208)
T ss_dssp CSCEEEEEE-E-TTTTEEEEEEEEECTTCCEEE
T ss_pred CCceecccC-C-ccccCCCCCceEEcCCCcEEE
Confidence 445555532 2 3456799999999997 7754
No 66
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.43 E-value=6.3e-14 Score=111.17 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=25.6
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..|++ +||++++|++++|+||||||||||+++|+|.+
T Consensus 11 ~~l~~-isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLV-PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccC-CceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57899 99999999999999999999999999999988
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.41 E-value=2.9e-14 Score=112.64 Aligned_cols=35 Identities=20% Similarity=0.096 Sum_probs=31.2
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.+|++ + ++|++++|+||||||||||+++|+|+ .+.
T Consensus 14 ~~l~~-i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~ 48 (208)
T 3b85_A 14 HYVDA-I----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ 48 (208)
T ss_dssp HHHHH-H----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH
T ss_pred HHHHh-c----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc
Confidence 67888 5 79999999999999999999999998 543
No 68
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.37 E-value=1.9e-13 Score=128.04 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=33.0
Q ss_pred eeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHH
Q psy9640 32 IKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVA 71 (199)
Q Consensus 32 s~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl 71 (199)
.+.+.+.....|++ +||++++|++++|+|+||||||||+
T Consensus 589 ~l~v~~~~~~~Lk~-Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 589 SLKIKGVRHNNLKN-IDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp EEEEEEECSTTCCS-EEEEEESSSEEEEECSTTSSHHHHH
T ss_pred eEEEeeeccccccc-cceEEcCCcEEEEEccCCCChhhhH
Confidence 34444433468999 9999999999999999999999997
No 69
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.34 E-value=1.9e-12 Score=101.27 Aligned_cols=98 Identities=32% Similarity=0.450 Sum_probs=60.9
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccc------cCCCCCCCchHHHHHHHHHHHHhcC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADII------VPRGGENCVAIDLIVQHIHSQLQAG 124 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (199)
.++|++++|+|+||||||||+++|++.+++ .++++++|.++....... .........+.+.+.+.+ +.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~ 80 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHA-QALLRG 80 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHH-HHHHTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHH-HHHHcC
Confidence 468999999999999999999999998865 577888887654322111 000111122234455555 333333
Q ss_pred ceeecCCceeeecceecCCe----eeeeeEEeccch
Q psy9640 125 VSVDMPQGYTYEGKRCAVSK----ICGVSILRAGET 156 (199)
Q Consensus 125 ~~~~~~~~~~~~g~~lSgGq----~QrvaiaRA~~~ 156 (199)
..+..|. ..+|+|+ +||++++|+++.
T Consensus 81 ~~~~~~~------~~~s~g~~~~~~~~~~~~~~li~ 110 (211)
T 3asz_A 81 LPVEMPV------YDFRAYTRSPRRTPVRPAPVVIL 110 (211)
T ss_dssp CCEEECC------EETTTTEECSSCEEECCCSEEEE
T ss_pred CCcCCCc------ccCcccCCCCCeEEeCCCcEEEE
Confidence 3334443 3578886 478899988754
No 70
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.34 E-value=9.2e-13 Score=108.99 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=65.0
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC-----eeeeecccchhcccccccc------------CCCCCCCchHHH
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLNVP-----WVTLLSMDSFYRVHADIIV------------PRGGENCVAIDL 112 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~-----~~~~i~~d~~~~~~~~~~~------------~~~~~~~~~~~~ 112 (199)
.-.++.+++|+|+||||||||++.|.+.+.+. .+.++++|+++........ .++.....+.+.
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~ 106 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL 106 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHH
Confidence 45678999999999999999999999988652 3344499998765422110 111233345566
Q ss_pred HHHHHHHHHhcC------ceeecCCceeeecceecCCeeeeeeEEec
Q psy9640 113 IVQHIHSQLQAG------VSVDMPQGYTYEGKRCAVSKICGVSILRA 153 (199)
Q Consensus 113 ~~~~l~~~~~~~------~~~~~~~~~~~~g~~lSgGq~QrvaiaRA 153 (199)
+.+.+ ..+..+ ..+..|.+ +..+||||.||+++|++
T Consensus 107 l~~~l-~~l~~g~~t~~~~~v~~p~y----~~~~sgGq~~R~~~a~~ 148 (290)
T 1odf_A 107 LQEVL-NTIFNNNEHPDQDTVVLPKY----DKSQFKGEGDRCPTGQK 148 (290)
T ss_dssp HHHHH-HHHTC------CCEEEECCE----ETTHHHHTCEECSSCEE
T ss_pred HHHHH-HHhhccCccccCcceeeccC----ccccCCccccccccccc
Confidence 66666 444433 23344443 45789999999998743
No 71
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.33 E-value=5.8e-14 Score=130.53 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=39.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHH-HHHHc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATK-IIESL 78 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~-L~~~l 78 (199)
-++++|+++ ..|++ +||++++|++++|+|+||||||||++. |+|.+
T Consensus 502 ~L~v~~l~~-------~~L~~-vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 502 WLELNGVTR-------NNLDN-LDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp EEEEEEEEE-------TTEEE-EEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred eEEEEeeee-------ccccc-ceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 367777764 36899 999999999999999999999999996 66654
No 72
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.32 E-value=1.5e-13 Score=105.48 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=28.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDS 90 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~ 90 (199)
++++|+|+||||||||+++|++++.+. ..|.+..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 589999999999999999999998765 245555443
No 73
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.31 E-value=2.5e-13 Score=102.90 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=48.8
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS 90 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~ 90 (199)
+..+++++.|... .++++ +||++++|++++|+||||||||||++.|+|.+ +.. |.+..++
T Consensus 8 ~~~~~~~~~~g~~--~~l~~-vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~-G~V~~~g 67 (158)
T 1htw_A 8 IPDEFSMLRFGKK--FAEIL-LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQ-GNVKSPT 67 (158)
T ss_dssp ECSHHHHHHHHHH--HHHHH-HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCC-SCCCCCT
T ss_pred cCCHHHHHHHHHH--HHHhc-cccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCC-CeEEECC
Confidence 4556677888654 68899 99999999999999999999999999999999 543 4444443
No 74
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.29 E-value=1.2e-13 Score=116.27 Aligned_cols=49 Identities=27% Similarity=0.293 Sum_probs=43.6
Q ss_pred cccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 28 LEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 28 l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
+++++| | .+++++ +++.+++|++++|+||||||||||+++|++++.+..
T Consensus 151 ~~~v~f-y----~~~l~~-l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~ 199 (330)
T 2pt7_A 151 YNLLDN-K----EQAISA-IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 199 (330)
T ss_dssp TTTSTT-H----HHHHHH-HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTS
T ss_pred cCchhh-H----HHHHhh-hhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence 778887 6 268889 999999999999999999999999999999987653
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.29 E-value=4.1e-12 Score=104.04 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=23.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
..++|+||||||||||+++|+|...+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~ 30 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRK 30 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC---
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4689999999999999999999886643
No 76
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.25 E-value=1.3e-12 Score=112.24 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=34.9
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
..+++ ++|++.+| +++|+|+||||||||+++|.++++.
T Consensus 49 ~~l~~-v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 49 ATITQ-LELELGGG-FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp TTEEE-EEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred cceee-EEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899 99999999 9999999999999999999888763
No 77
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.25 E-value=1.7e-12 Score=100.00 Aligned_cols=24 Identities=46% Similarity=0.583 Sum_probs=22.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
+++|+||||||||||+++|+|.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999986
No 78
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.24 E-value=1.4e-12 Score=122.16 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=31.7
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~ 75 (199)
..|++ |||++++|++++|+|+||||||||++.|+
T Consensus 638 ~~Lk~-Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 638 HNLKN-VSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSCCS-EEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred ccccc-ceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 46899 99999999999999999999999999864
No 79
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.24 E-value=2e-12 Score=121.46 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=31.7
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~ 75 (199)
..|++ +||++++|++++|+|+||||||||++.|+
T Consensus 656 ~~Lk~-Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 656 HNLRG-IDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TTCCS-EEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccC-ceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 46899 99999999999999999999999999854
No 80
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.17 E-value=1.4e-12 Score=112.70 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=37.8
Q ss_pred cccccccccCCCCCCe--------------------EEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 40 KPAFSTFIAPSMVEPF--------------------VIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~--------------------iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
..++++ +++++++|+ +++|+|+||||||||+|+|+|+..+..
T Consensus 36 ~~~l~~-is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~ 97 (413)
T 1tq4_A 36 QEILNL-IELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE 97 (413)
T ss_dssp HHHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTST
T ss_pred HHHhhh-ccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccC
Confidence 368999 999999999 999999999999999999999876543
No 81
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.17 E-value=1.9e-11 Score=108.68 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=41.6
Q ss_pred cccccceeeccccccccccccccC-CCCCCeEEEEecCCCCcHHHHHHH--HHHHcCCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAP-SMVEPFVIGICGGSASGKTTVATK--IIESLNVP 81 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl-~i~~g~iv~IvG~SGsGKSTLl~~--L~~~l~~~ 81 (199)
++.+++.....+ .++|++ +++ .+++|++++|+||||||||||+++ +.|.+.+.
T Consensus 13 ~~~~~~~~~~~g--~~~Ld~-i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~ 68 (525)
T 1tf7_A 13 SEHQAIAKMRTM--IEGFDD-ISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD 68 (525)
T ss_dssp -CCSSCCEECCC--CTTHHH-HTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccCC--chhHHH-hcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC
Confidence 445555443333 479999 999 999999999999999999999999 56776543
No 82
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.15 E-value=1.9e-11 Score=101.62 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=34.4
Q ss_pred ccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 43 FSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 43 l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+.. ++|++++|++++|+|||||||||++++|++.+.+.
T Consensus 90 ~~~-l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 90 KTE-LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp CCS-CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ccc-cccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 356 89999999999999999999999999999998654
No 83
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.15 E-value=5.9e-12 Score=107.23 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=29.5
Q ss_pred cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+++ +++.+.+| +.+|+||||||||||+.+|...+
T Consensus 13 ~~~~-~~i~~~~g-~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 13 GLKN-VDIEFQSG-ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp TEEE-EEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred Cccc-eEEecCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 4567 78888888 78899999999999999998543
No 84
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.13 E-value=1.3e-11 Score=106.85 Aligned_cols=54 Identities=22% Similarity=0.147 Sum_probs=43.9
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
.++++++++.|... .+|++ + +. .+|.+++|+||||||||||++.|++.+.+...
T Consensus 143 ~~~l~~Lg~~~~~~--~~L~~-l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g 196 (418)
T 1p9r_A 143 RLDLHSLGMTAHNH--DNFRR-L-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSER 196 (418)
T ss_dssp CCCGGGSCCCHHHH--HHHHH-H-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTS
T ss_pred CCCHHHcCCCHHHH--HHHHH-H-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCC
Confidence 46777887777543 57788 6 43 79999999999999999999999999977643
No 85
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.09 E-value=5.8e-11 Score=98.79 Aligned_cols=30 Identities=23% Similarity=0.136 Sum_probs=27.6
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
+|++++|+||||||||||+++|++++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~ 130 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG 130 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 789999999999999999999999997653
No 86
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.07 E-value=4.7e-11 Score=101.47 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=33.7
Q ss_pred cccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 44 STFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 44 ~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.. ++|++++|++++|+|||||||||++++|++++.+.
T Consensus 148 ~~-l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 148 TE-LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp CS-CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CC-cceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 45 88999999999999999999999999999998654
No 87
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.07 E-value=8e-11 Score=102.55 Aligned_cols=63 Identities=10% Similarity=0.066 Sum_probs=53.1
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS 90 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~ 90 (199)
.-++++++++.|... ..++++ + |++.+|++++|+||||||||||+++|+|+..+.. |.+..++
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~-v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~-G~i~~~G 192 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINA-L-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADV-IVVGLIG 192 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHH-H-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSE-EEEEEES
T ss_pred CceEEeccceecCCC-ceEEee-e-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCe-EEEEEec
Confidence 469999999999732 379999 9 9999999999999999999999999999987764 4444433
No 88
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.07 E-value=1.6e-11 Score=102.16 Aligned_cols=66 Identities=29% Similarity=0.422 Sum_probs=54.2
Q ss_pred ccCcccccceeeccccccccccccccCCC-------------------CCCeEEEEecCCCCcHHHHHHHHHHHcC--CC
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSM-------------------VEPFVIGICGGSASGKTTVATKIIESLN--VP 81 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i-------------------~~g~iv~IvG~SGsGKSTLl~~L~~~l~--~~ 81 (199)
...|+++||++.|. +++++ +++.+ .+|+++||+|+||||||||+++|++.+. +.
T Consensus 35 ~~~i~~~~v~~~y~----~~~~~-i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL----PLSRL-LNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH----HHHHH-HHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH----HHHHH-HHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 44699999999993 67788 88877 8999999999999999999999999887 43
Q ss_pred --eeeeecccchhc
Q psy9640 82 --WVTLLSMDSFYR 93 (199)
Q Consensus 82 --~~~~i~~d~~~~ 93 (199)
.+.++..|+++.
T Consensus 110 ~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 110 HRRVELITTDGFLH 123 (308)
T ss_dssp CCCEEEEEGGGGBC
T ss_pred CCeEEEEecCCccC
Confidence 244455677654
No 89
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.04 E-value=1.4e-10 Score=96.16 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=21.7
Q ss_pred ccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 29 EGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 29 ~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
+||+++|.+. .++++ ++|++ +|+|+||||||||++.|++.
T Consensus 2 ~~l~~~~~~~--~~l~~-~~~~I------~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 2 SNLPNQVHRK--SVKKG-FEFTL------MVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC-
T ss_pred CCCcceECCE--EEEcC-CCEEE------EEECCCCCCHHHHHHHHhCC
Confidence 5788999765 78999 89886 99999999999999999876
No 90
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.04 E-value=7.9e-11 Score=98.43 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=27.6
Q ss_pred ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 47 IAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+++.+.+| +.+|+|+||||||||+..|...+
T Consensus 18 ~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 18 SLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred eEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 67777888 99999999999999999998655
No 91
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.03 E-value=1.2e-10 Score=98.58 Aligned_cols=56 Identities=18% Similarity=0.095 Sum_probs=50.0
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
.-++++++++.|... ..++++ + |++.+|++++|+|+||||||||+++|+|...+..
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~-l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDG-L-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHH-H-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CCeeecccceecCCC-CEEEEe-e-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 358999999999732 379999 8 9999999999999999999999999999988764
No 92
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.00 E-value=5e-11 Score=96.55 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=38.1
Q ss_pred Ccccccc-eeeccccccccccccccCCCCC---CeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 25 GRDLEGV-IKQYVNMVKPAFSTFIAPSMVE---PFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 25 ~i~l~nv-s~~y~~~~~~~l~~~vsl~i~~---g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
-++++|+ +++|.+ ..++|++ +||++.+ |++++|+|+|||||||+++.|++.++..
T Consensus 17 ~l~~~~~~~~~~~~-~~~~l~~-~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~ 75 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-EQQILKK-KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYT 75 (250)
T ss_dssp ----------------CHHHHH-HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred ceEEcceeeEEecC-cchhhhh-hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 5899999 999932 2479999 9999999 9999999999999999999999988754
No 93
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.99 E-value=3.8e-11 Score=102.11 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=46.7
Q ss_pred ccccceee---ccccccccc---------cccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 27 DLEGVIKQ---YVNMVKPAF---------STFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 27 ~l~nvs~~---y~~~~~~~l---------~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
++++++|. |+....++| ++ +++.+++|++++|+||||||||||+++|++++.+.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~-l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSF-LRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHH-HHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHH-HHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 89999998 864223454 88 99999999999999999999999999999988764
No 94
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.96 E-value=1.7e-10 Score=93.90 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=41.2
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
-++++++++. ++|++ ++ +++|++++|+||||||||||+++|++++.+.
T Consensus 5 ~~~l~~l~~~------~vl~~-i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 5 IPEFKKLGLP------DKVLE-LC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp -CCGGGSSCC------THHHH-GG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CCChHHCCCH------HHHHH-Hh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 4677888763 58899 88 8999999999999999999999999988654
No 95
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.94 E-value=4.1e-10 Score=86.33 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=26.3
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+++|++++|+|+|||||||++++|++..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 57899999999999999999999999873
No 96
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.92 E-value=2e-10 Score=96.84 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=48.1
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
-++++++++.|... .++++ +++++.+|++++|+|+||||||||+++|++.+.+
T Consensus 29 ~ie~~~~~~~~~~~--~~l~~-i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 29 LAESRRADHRAAVR--DLIDA-VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HHTCSSHHHHHHHH--HHHHH-HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHeeCCcccccChH--HHHHh-CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 48999999999654 68999 9999999999999999999999999999998754
No 97
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.91 E-value=2.8e-10 Score=98.53 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=40.8
Q ss_pred ccCcccccceeeccccccccccccccCCCCCCeE--EEEecCCCCcHHHHHHHHHHHc
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFV--IGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~i--v~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+.+++++ ++.|++. + +++ +++++++|++ ++|+|+||||||||+++|+|..
T Consensus 14 ~~~l~~~~-~~~y~~~--~-L~~-vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 14 CRTVPLAG-HVGFDSL--P-DQL-VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp ---CCCCC-CC-CC----C-HHH-HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CceEEEee-EEEECCe--e-cCC-CceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 34688888 8889765 5 999 9999999999 9999999999999999999874
No 98
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.90 E-value=3.8e-10 Score=94.53 Aligned_cols=78 Identities=24% Similarity=0.454 Sum_probs=52.9
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcCC----Ceeeeecccchhccccccc-----cCCCCCCCchHHHHHHHHHHHHhcC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLNV----PWVTLLSMDSFYRVHADII-----VPRGGENCVAIDLIVQHIHSQLQAG 124 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~~----~~~~~i~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (199)
..++||+||||||||||+++|.+++.. ..++++.+|+++....... ...+.....+.+.+.+.+ ..+..+
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L-~~L~~g 170 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVL-NAIKSG 170 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHH-HHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHH-Hhhhcc
Confidence 359999999999999999999999863 3577889999875433221 112223344556777777 555555
Q ss_pred c-eeecCCc
Q psy9640 125 V-SVDMPQG 132 (199)
Q Consensus 125 ~-~~~~~~~ 132 (199)
. .+..|.+
T Consensus 171 ~~~v~~P~y 179 (321)
T 3tqc_A 171 QRNVRIPVY 179 (321)
T ss_dssp CSSEEEEEE
T ss_pred ccccccchh
Confidence 4 5666654
No 99
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.86 E-value=1.3e-09 Score=84.42 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=26.5
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
|+++++|++++|+||||||||||+++|++.+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 56788999999999999999999999999863
No 100
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.86 E-value=1.2e-09 Score=85.47 Aligned_cols=36 Identities=28% Similarity=0.300 Sum_probs=26.1
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
+++++ .++++|++++|+||||||||||+++|+|++.
T Consensus 10 ~~~~~---~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 10 PTARG---QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred cCCCC---CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 56666 5899999999999999999999999999984
No 101
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.84 E-value=5.2e-10 Score=91.54 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=35.0
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.++++ +++.+++| ++|.||||||||||+++|++.+++.
T Consensus 34 ~~l~~-~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~ 71 (274)
T 2x8a_A 34 DQFKA-LGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLN 71 (274)
T ss_dssp HHHHH-TTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred HHHHH-cCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCC
Confidence 67889 99999999 9999999999999999999988764
No 102
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.83 E-value=1.6e-10 Score=108.40 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=34.1
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
..++++ ++|++++|++++|+|||||||||++|++++.
T Consensus 660 ~~V~nd-vsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 660 QYVPNN-TDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSCCEE-EEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ceeccc-ccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 468899 9999999999999999999999999998754
No 103
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.82 E-value=9e-10 Score=87.38 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=22.8
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH-HHcC
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII-ESLN 79 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~-~~l~ 79 (199)
+...+ +||++++|++++|+||||||||||+++|+ +.+.
T Consensus 15 ~~~~~-~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGP-GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCC-CCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 44577 99999999999999999999999999999 8864
No 104
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.82 E-value=6.6e-10 Score=98.68 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=37.8
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+++++++..|+. |+..++..+.+|++++|+|+||||||||++.+++...+
T Consensus 258 ~~~~~l~~g~~~-----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 258 SSNVRVSSGVVR-----LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp CCCCEECCSCHH-----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred cccceeecChHH-----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 455556555432 23313568999999999999999999999999998754
No 105
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=3.5e-09 Score=82.12 Aligned_cols=44 Identities=25% Similarity=0.229 Sum_probs=27.5
Q ss_pred cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 38 MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 38 ~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
....++++ +||++++|.+++|+|+|||||||+++.|++.++...
T Consensus 10 ~~~~~~~~-~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~ 53 (199)
T 3vaa_A 10 GVDLGTEN-LYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPF 53 (199)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred CCCCCCCc-eeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 34578999 999999999999999999999999999999886543
No 106
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=98.79 E-value=6.5e-09 Score=82.25 Aligned_cols=73 Identities=25% Similarity=0.372 Sum_probs=61.8
Q ss_pred ceeecCCceeeecceecC-CeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCC-------CCchhhhhcCCCCcc
Q psy9640 125 VSVDMPQGYTYEGKRCAV-SKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKAT-------DEPELYYLRLPKDIK 196 (199)
Q Consensus 125 ~~~~~~~~~~~~g~~lSg-Gq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~-------~~~~~~~~~~p~~~~ 196 (199)
..++.|.+..+.+..+.+ .+.--|+|.||++.|.+++++++|++++|+|+++||..+ .+|+.||.|+| ++.
T Consensus 52 ~~v~TP~g~~~~~~~~~~~~~i~iV~IlRaG~~m~~gl~~~lp~a~vg~I~~~Rd~~t~~~~~~~~~p~~~y~klP-~i~ 130 (216)
T 1xtt_A 52 VEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIP-DIR 130 (216)
T ss_dssp EEEECTTSCEEEEEECGGGGSEEEEEEETTTHHHHHHHHHHCTTCEEEEEEEEECCCCCSSCCSCCCEEEEEEECC-CCC
T ss_pred EEEECCCccEecceEecCCCcEEEEeecCCcHHHHHHHHHHcccCccceEEEEECCCcccccccccCceEeeccCC-Ccc
Confidence 456677764444445676 677889999999999999999999999999999999988 89999999999 776
Q ss_pred CC
Q psy9640 197 DY 198 (199)
Q Consensus 197 ~~ 198 (199)
++
T Consensus 131 ~~ 132 (216)
T 1xtt_A 131 AK 132 (216)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 107
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.78 E-value=2.1e-09 Score=94.50 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=37.6
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
.+|++ ++|++++ ++++|+||||||||||+++|+|++.+..+
T Consensus 18 ~~l~~-vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 18 NGFFA-RTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp TTEEE-EEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred ccccc-eEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 57899 9999999 99999999999999999999999876543
No 108
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.77 E-value=1.4e-09 Score=92.25 Aligned_cols=38 Identities=13% Similarity=0.254 Sum_probs=31.8
Q ss_pred cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC-CC
Q psy9640 42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN-VP 81 (199)
Q Consensus 42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~-~~ 81 (199)
.+++ +++.+ +|++++|+|+||||||||+++|+|... +.
T Consensus 205 gl~~-L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~ 243 (358)
T 2rcn_A 205 GLKP-LEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEIL 243 (358)
T ss_dssp THHH-HHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCC
T ss_pred CHHH-HHHhc-CCCEEEEECCCCccHHHHHHHHhccccccc
Confidence 4566 66654 799999999999999999999999876 44
No 109
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.74 E-value=2.7e-09 Score=82.82 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=35.4
Q ss_pred ccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 29 EGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 29 ~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
+|+++++... ...+. .++..++|++++|+|+|||||||+++.|++.+.
T Consensus 3 ~~~~~~~~~~--~~~~~-~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 3 TNIKWHECSV--EKVDR-QRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp -------CCC--CHHHH-HHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCccccccc--CHHHH-HHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3555555333 56677 788889999999999999999999999999874
No 110
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.74 E-value=2.1e-09 Score=83.31 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=33.9
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
++++|+++.|.. +++++ |.+.+|..++|+|+||||||||++.|+|..
T Consensus 4 l~~~~~~~~~~~---~~l~~---~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 4 LNYQQTHFVMSA---PDIRH---LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp -------CEEEE---SSGGG---SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhhhhhheeec---CCHhH---CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999962 45555 788999999999999999999999998765
No 111
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=98.74 E-value=5.8e-09 Score=82.54 Aligned_cols=71 Identities=28% Similarity=0.434 Sum_probs=63.8
Q ss_pred ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY 198 (199)
Q Consensus 125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 198 (199)
..++.|.+ .+.|..++|.+---|+|.||++.|.+++.+++|++.+|+|+++||..+ +|+.||.++| +++++
T Consensus 60 ~~V~TP~g-~~~g~~~~~~~i~~V~IlRaG~~m~~~l~~~ip~a~vg~i~~~Rd~~t-~p~~~~~~lP-~i~~~ 130 (217)
T 3dmp_A 60 KRVETPLV-EIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRADDH-RPVEYLVRLP-DLEDR 130 (217)
T ss_dssp EEEECSSC-EEEEEEECGGGEEEEEEETTTHHHHHHHHHHCTTSEECEEECSCCCSS-SCCCSEEECC-CCTTC
T ss_pred EEEECCCe-EEEEEEecCCcEEEEEecccchHHHHHHHHhCcCCceeEEEEEECCCC-CcEEEeecCC-CCCCC
Confidence 45677877 667888887788889999999999999999999999999999999999 9999999999 87764
No 112
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.73 E-value=7.3e-09 Score=82.12 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=26.8
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.-.+++|++++|+||||||||||+++|+|.+.+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 447899999999999999999999999999875
No 113
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.66 E-value=1.1e-08 Score=89.91 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=34.6
Q ss_pred ccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 43 FSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 43 l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
-++ ++|++.+|++++|+|+||||||||+++|++++.+.
T Consensus 283 ~~~-Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 283 DEP-LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp BCC-CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCC-ceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 367 89999999999999999999999999999998654
No 114
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.66 E-value=1.2e-08 Score=86.49 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=35.6
Q ss_pred ccccccCCCCC--CeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 43 FSTFIAPSMVE--PFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 43 l~~~vsl~i~~--g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
... |++.+.+ |+.++|+|+||||||||+++|+|++.+..
T Consensus 158 ~~~-v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 158 WKF-IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GGG-SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hhh-CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 344 9999999 99999999999999999999999998765
No 115
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.65 E-value=1.9e-08 Score=79.82 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=34.5
Q ss_pred cccccceeeccccccccccccc-cCCCCCCeEEEEecCCCCcHHHHHHHHH--HH
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFI-APSMVEPFVIGICGGSASGKTTVATKII--ES 77 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~v-sl~i~~g~iv~IvG~SGsGKSTLl~~L~--~~ 77 (199)
+++++++..++ .|++ + .=.+++|++++|+||||||||||+++|+ +.
T Consensus 7 ~~~~~i~tg~~-----~lD~-~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 7 QPVRRVKSGIP-----GFDE-LIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp -CCCEECCSCT-----TTGG-GTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cccceeecCCH-----hHHH-HhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 55566665553 3444 3 1278999999999999999999999999 55
No 116
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.65 E-value=3.9e-09 Score=99.31 Aligned_cols=35 Identities=14% Similarity=-0.014 Sum_probs=32.4
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~ 75 (199)
..++++ ++|++.+|++++|+|||||||||++|+++
T Consensus 649 ~~v~nd-isl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 649 AFIPND-VYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CCCCEE-EEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eeeccc-ceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 367889 99999999999999999999999999993
No 117
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.63 E-value=1.2e-08 Score=86.55 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=40.9
Q ss_pred ccceeeccccccccccccccC-------CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 29 EGVIKQYVNMVKPAFSTFIAP-------SMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 29 ~nvs~~y~~~~~~~l~~~vsl-------~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.+++++|.....+.|++ +.+ ...+|.+++|+||||||||||+++|++.+.+.
T Consensus 92 ~~~~iR~~~~~~~~l~~-lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEE-LGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEEEEECCSCCCTTT-TTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCCHHH-cCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 35666664444567777 666 66888999999999999999999999988654
No 118
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.62 E-value=1.2e-08 Score=79.21 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=23.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
++|++++|+||||||||||+++|++.+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999999874
No 119
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.61 E-value=1.5e-08 Score=79.48 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=29.0
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 49 PSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
=.+++|++++|+||||||||||+++|++...+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 37999999999999999999999999996654
No 120
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.61 E-value=2.2e-08 Score=77.31 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=27.0
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
++.+|++++|+|+|||||||++++|++.+.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998744
No 121
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=98.59 E-value=6.1e-08 Score=77.90 Aligned_cols=73 Identities=51% Similarity=0.881 Sum_probs=63.5
Q ss_pred ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY 198 (199)
Q Consensus 125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 198 (199)
..++.|.+..+.|..+. .+.--|+|.||+..|.+++.+++|.+++|+|+++||+.+.++++||.++|.++.++
T Consensus 85 ~~v~TP~g~~~~g~~~~-~~l~~V~ILRaG~~m~~~l~~~ip~a~vg~I~~~Rd~~t~~~~~~~~~lp~di~~r 157 (243)
T 1bd3_D 85 KEVTTPLDVSYHGVSFY-SKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRER 157 (243)
T ss_dssp EEEECTTSCEEEEEEEC-CCEEEEEEETTTHHHHHHHHHHSTTCCEEEEEEEECSSSCCEEEEEEECCTTGGGS
T ss_pred EEEECCCcceEeeeecc-CcEEEEEEEcchHHHHHHHHHhCCcCeeeeEEEEEcCCCCCeEEEeccCCcccCCC
Confidence 45677777555666664 67778999999999999999999999999999999999999999999999988764
No 122
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=98.59 E-value=3.5e-08 Score=77.61 Aligned_cols=73 Identities=30% Similarity=0.348 Sum_probs=65.1
Q ss_pred ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY 198 (199)
Q Consensus 125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 198 (199)
..++.|.+ .+.|..+.|.+---|+|.||+..|.+++.+++|.+++++|.++||+.+.+|++||.++|.++.++
T Consensus 52 ~~v~TP~~-~~~g~~~~g~~l~~V~ILraG~~~~~~l~~~ip~~~vg~i~~~rd~~t~~~~~~~~~lp~di~~r 124 (208)
T 2ehj_A 52 VTIEGWNG-PVEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNIDER 124 (208)
T ss_dssp EEEEETTE-EEEEEEECSSCCEEEEBTTGGGGGHHHHHHHCTTCEECEEEEEECTTTCCEEEEEEECCSCGGGC
T ss_pred EEEECCCc-cEEEEEecCCceEEEEeecCHHHHHHHHHHhCCcCceeEEEEEEcCCCCceEEEecCCCCccCCC
Confidence 45677777 56777888777888999999999999999999999999999999999999999999999988764
No 123
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.58 E-value=3.7e-08 Score=75.19 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=26.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
-+|++++|+||||||||||+++|++.+.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 36899999999999999999999998753
No 124
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.58 E-value=1.3e-08 Score=87.96 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=37.0
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.-+.++||+++|+.. .++++ ++|++ +|+|+||||||||+++|+|...
T Consensus 10 ~~l~~~~l~~~y~~~--~vl~~-vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 10 GYVGFANLPNQVYRK--SVKRG-FEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp -----CCCCCCTTTT--TCC-C-CCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred CcEEEEecceeECCE--EEecC-CCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 358999999999764 78999 99986 9999999999999999998764
No 125
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1
Probab=98.57 E-value=2.9e-08 Score=78.07 Aligned_cols=73 Identities=29% Similarity=0.454 Sum_probs=56.6
Q ss_pred ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY 198 (199)
Q Consensus 125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 198 (199)
..++.|.+ .+.|..+.|.+---|+|.||+..|.+++.+++|.+++++|.++||+.+.+|++||.++|.++.++
T Consensus 52 ~~v~TP~g-~~~g~~~~g~~l~~V~ILraG~~~~~~l~~~ip~~~vg~I~~~rd~~t~~~~~~~~~lp~di~~r 124 (208)
T 1v9s_A 52 TTVETPIA-PARVKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAER 124 (208)
T ss_dssp EEEECSSS-EEEEEEECSSCCEEEEETTTHHHHHHHHHTTCTTCEEEEEEEC---------CEEEECCSCGGGS
T ss_pred EEEECCCc-eEEEEEecCCceEEEEeccchHHHHHHHHHhCCCCeeeEEEEEEcCCCCCceEEeccCCCccCCC
Confidence 45677777 56777888777888999999999999999999999999999999999999999999999988765
No 126
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.56 E-value=2.3e-08 Score=81.99 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=36.8
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
++|++ +++.+++|++++|+|+||||||||++.|++.+.+.
T Consensus 23 ~~Ld~-i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 23 TGIND-KTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp TTHHH-HHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHH-HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 67899 99999999999999999999999999999987543
No 127
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.53 E-value=9.6e-09 Score=92.83 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=32.6
Q ss_pred Ccccccceeeccccccccccccc----------cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFI----------APSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS 90 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~v----------sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~ 90 (199)
.++++|+++.|....++.++. + +++++. ++|+|+||||||||+++|+|++.|...|.+..++
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~-id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDL-IDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP 81 (608)
T ss_dssp ----------CHHHHHHHHHH-HHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSC
T ss_pred hhhhhhhhHHHHHHHHHHHHH-HHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcC
Confidence 478899999997543444443 3 355543 9999999999999999999987664455554443
No 128
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.53 E-value=3.5e-08 Score=93.77 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=40.1
Q ss_pred Cccccc-----ceeeccccccccccccccCCCCC-------CeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 25 GRDLEG-----VIKQYVNMVKPAFSTFIAPSMVE-------PFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 25 ~i~l~n-----vs~~y~~~~~~~l~~~vsl~i~~-------g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.++++| |++.|.+. ..++++ ++|.+.+ |++++|+|||||||||++|.+ |++.
T Consensus 750 ~l~i~~~rHP~l~~~~~~~-~~v~nd-i~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFGD-DFIPND-ILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CEEEEEECCCC------CC-CCCCEE-EEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred eEEEEeccccEEEEEecCC-ceEeee-eeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 488999 99988432 378999 9999987 899999999999999999999 7763
No 129
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.52 E-value=3.9e-08 Score=75.42 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=24.0
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
|++++|+||||||||||+++|++.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999875
No 130
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.52 E-value=6.8e-08 Score=82.60 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=48.6
Q ss_pred ccCcccccceeecccccccccc--------------ccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFS--------------TFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~--------------~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
...+.++|+++.|+.. +..++ | +.+.+.+|+.++|+|+||||||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID-~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLD-LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHH-HHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeee-eeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4579999999999875 46778 8 89999999999999999999999999998865
No 131
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus}
Probab=98.51 E-value=9e-08 Score=75.28 Aligned_cols=72 Identities=29% Similarity=0.364 Sum_probs=63.6
Q ss_pred ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY 198 (199)
Q Consensus 125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 198 (199)
..++.|.+ .+.+..++|.+---|+|.||+..|.+.+.+++|.+++++|.++||+.+.+|++||.++| ++.++
T Consensus 51 ~~v~TP~~-~~~~~~~~g~~~~~V~ILraG~~~~~~l~~~lp~~~vg~i~~~rd~~t~~~~~~~~~lp-di~~r 122 (208)
T 2e55_A 51 KEVRTWIG-NKRFNYLNEEEIVFVPILRAGLSFLEGALQVVPNAKVGFLGIKRNEETLESHIYYSRLP-ELKGK 122 (208)
T ss_dssp EEEEETTE-EEEEEECCGGGEEEEEEETTTHHHHHHHHHHSTTCEECEEEEEECTTTCCEEEEEEECC-CCBTS
T ss_pred eEEeCCCC-ceEeeeecCCcEEEEEEecchHHHHHHHHHhCCCCcEEEEEEEEecCCCceEEEecCCC-CCCCC
Confidence 35667777 55677788777888999999999999999999999999999999999999999999999 87654
No 132
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.49 E-value=3e-08 Score=79.49 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=43.0
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.+++++++.|... .++++ +++.+++| ++|+||||||||||++.|++.+...
T Consensus 26 ~~l~~l~~~~~~~--~~~~~-~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~~~ 76 (254)
T 1ixz_A 26 EELKEIVEFLKNP--SRFHE-MGARIPKG--VLLVGPPGVGKTHLARAVAGEARVP 76 (254)
T ss_dssp HHHHHHHHHHHCH--HHHHH-TTCCCCSE--EEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCH--HHHHH-cCCCCCCe--EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5567777777543 67899 99999999 9999999999999999999987643
No 133
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.48 E-value=8.8e-08 Score=72.75 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=31.1
Q ss_pred cccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 44 STFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 44 ~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
++ +++.+.+| +.+|+|+|||||||++++|...+.+
T Consensus 18 ~~-~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KK-VVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SC-EEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cc-EEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45 78888888 9999999999999999999988765
No 134
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.47 E-value=1.2e-07 Score=73.57 Aligned_cols=46 Identities=35% Similarity=0.619 Sum_probs=37.7
Q ss_pred ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc
Q psy9640 47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 94 (199)
Q Consensus 47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~ 94 (199)
+--.+++|.+++|+|+|||||||+++.|++.+. .+.++++|.++..
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~--~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP--NCSVISQDDFFKP 59 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST--TEEEEEGGGGBCC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC--CcEEEeCCccccC
Confidence 455788999999999999999999999988763 3567788877653
No 135
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.46 E-value=3.9e-08 Score=80.03 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=41.6
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.+++++.+.|... .++++ +++.+++| ++|+||||||||||+++|++.+...
T Consensus 50 ~~l~~l~~~~~~~--~~l~~-~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~~~ 100 (278)
T 1iy2_A 50 EELKEIVEFLKNP--SRFHE-MGARIPKG--VLLVGPPGVGKTHLARAVAGEARVP 100 (278)
T ss_dssp HHHHHHHHHHHCH--HHHHH-TTCCCCCE--EEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCH--HHHHH-cCCCCCCe--EEEECCCcChHHHHHHHHHHHcCCC
Confidence 3456666666443 67889 99999999 9999999999999999999988633
No 136
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.46 E-value=4.2e-09 Score=91.12 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=31.7
Q ss_pred ccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 43 FSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 43 l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
-++ ++++++.++.++|+|+||||||||++.|++.
T Consensus 147 ~~~-i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRR-LRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEE-EEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred Eee-eeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 367 8999999999999999999999999999886
No 137
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=98.45 E-value=1.7e-07 Score=74.32 Aligned_cols=73 Identities=30% Similarity=0.378 Sum_probs=65.0
Q ss_pred ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY 198 (199)
Q Consensus 125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 198 (199)
..++.|.+ .+.|..+.|.+---|+|.|++..|.+.+.+.+|++.+++|.++||+.+.+++.||.++|.++.++
T Consensus 65 ~~v~TP~g-~~~g~~~~g~~lviV~IlrgG~~~~~~l~~~lp~a~vg~I~~~Rd~~t~~~~~~~~~lp~di~gr 137 (221)
T 1o5o_A 65 VEVETPIT-KTIGYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLPPLNDDK 137 (221)
T ss_dssp EEEECSSC-EEEEEECCSTTEEEEEEETTHHHHHHHHHHHSTTCEECEEEEEECTTTCCEEEEEEECCCCCTTC
T ss_pred EEEECCCc-eEEEEEecCCeEEEEEEecchHHHHHHHHHhCCCCcEEEEEEEEcCCCCceeEEEecCCCccCCC
Confidence 45677777 56777888778888999999999999999999999999999999999999999999999988764
No 138
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.44 E-value=1e-07 Score=73.77 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=25.7
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.+..++|++++|+|+|||||||++++|++.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34567899999999999999999999999884
No 139
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.44 E-value=1.3e-07 Score=73.78 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=26.7
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
++|++++|+||||||||||++.|++.+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998764
No 140
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.42 E-value=6.7e-08 Score=82.34 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=28.8
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+++|++++|+||||||||||+++|++.+.+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 7899999999999999999999999988654
No 141
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.42 E-value=1e-07 Score=73.87 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=24.5
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
|++++|+||||||||||+++|++.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 68899999999999999999999885
No 142
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.40 E-value=3.6e-07 Score=70.83 Aligned_cols=46 Identities=35% Similarity=0.411 Sum_probs=34.1
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhc
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYR 93 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~ 93 (199)
+....+|.+++|+|+|||||||+++.|++.+.+. .+..+..|.++.
T Consensus 16 ~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 16 AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp TSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred HhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 3457789999999999999999999999987432 233334455543
No 143
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.40 E-value=1.1e-07 Score=80.62 Aligned_cols=135 Identities=12% Similarity=0.036 Sum_probs=76.1
Q ss_pred ccccccccC--CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccch----hccccccccCCC-CCCCchHH
Q psy9640 41 PAFSTFIAP--SMVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSF----YRVHADIIVPRG-GENCVAID 111 (199)
Q Consensus 41 ~~l~~~vsl--~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~----~~~~~~~~~~~~-~~~~~~~~ 111 (199)
+.|+. +-- -+++|+++.|.||+|||||||+..++...... .+-++..... +.........+. ...+...+
T Consensus 47 ~~LD~-~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e 125 (356)
T 3hr8_A 47 LAIDI-ATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125 (356)
T ss_dssp HHHHH-HTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHH
T ss_pred HHHHH-HhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHH
Confidence 45555 322 68899999999999999999999998875322 2223322211 000001111110 11123344
Q ss_pred HHHHHHHHHHhcC--c--eeecCCceeeec-ceecC--CeeeeeeEEeccchhHHHHHhhccccceeEEEEEeC
Q psy9640 112 LIVQHIHSQLQAG--V--SVDMPQGYTYEG-KRCAV--SKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTN 178 (199)
Q Consensus 112 ~~~~~l~~~~~~~--~--~~~~~~~~~~~g-~~lSg--Gq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~ 178 (199)
.+...+....... . .++--..+ .+ ..++| |++|+...||++..+...|.++.....+++|++.|=
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l--~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAAL--VPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTC--CCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhh--cChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 4444442222211 1 11100000 11 23444 788999999999988888888888888888888763
No 144
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.39 E-value=1.8e-07 Score=70.26 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=26.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.+.+++|+|+|||||||+++.|++.++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~ 31 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNME 31 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 46789999999999999999999988753
No 145
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.38 E-value=1.2e-07 Score=73.98 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=33.8
Q ss_pred ccccccccC-CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 41 PAFSTFIAP-SMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 41 ~~l~~~vsl-~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
+.|++ +.. .+++|++++|+||||||||||++.|++...
T Consensus 10 ~~Ld~-~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 10 LDFDK-LIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp HHHHG-GGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hHHHH-HhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 57788 777 899999999999999999999999997663
No 146
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.37 E-value=1.7e-07 Score=78.57 Aligned_cols=32 Identities=34% Similarity=0.420 Sum_probs=28.9
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
..++|++++|+|||||||||++++|++.+.+.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999998654
No 147
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.35 E-value=1.3e-07 Score=80.74 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=36.6
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
..++++ +++.+++|++++|+||||||||||++.|++.+..
T Consensus 156 ~~~l~~-~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 156 YDFLKC-MVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp HHHHHH-HHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred HHHHHh-cccccCCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 367889 9999999999999999999999999999998754
No 148
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.35 E-value=3.4e-07 Score=69.01 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=26.3
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.+|++++|+|+|||||||+++.|++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 57999999999999999999999988753
No 149
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.35 E-value=5.3e-08 Score=86.29 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=35.8
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.++++ +++.+++|+.++|+||||||||||+++|++++.+.
T Consensus 248 ~~l~~-l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 248 GVLAY-LWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp HHHHH-HHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHH-HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 45677 88899999999999999999999999999998654
No 150
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.33 E-value=3.4e-07 Score=71.40 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=26.7
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
++...+|.+++|+||||||||||++.|++.+.
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45566899999999999999999999998764
No 151
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.32 E-value=3.4e-07 Score=73.67 Aligned_cols=30 Identities=37% Similarity=0.398 Sum_probs=26.4
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
-.++|++++|+|||||||||++++|+..++
T Consensus 23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 23 MTAIAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CTTTSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 347899999999999999999999996554
No 152
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.31 E-value=2.6e-07 Score=70.11 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=29.3
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
++.+.+|+.++|.||+|||||||++.|++.+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67788899999999999999999999999874
No 153
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.31 E-value=2.8e-07 Score=85.61 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=34.0
Q ss_pred cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..++++ ++|+ ++|++++|+||||||||||+|+|++..
T Consensus 595 ~~vlnd-isl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 595 PFIANP-LNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCCCEE-EEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeec-cccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 468899 9999 999999999999999999999999864
No 154
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.31 E-value=2.6e-07 Score=85.38 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=38.4
Q ss_pred cCcccccceeeccc-cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 24 RGRDLEGVIKQYVN-MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 24 ~~i~l~nvs~~y~~-~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..+++++...-.-. ....+++| ++|+ |++++|+||||||||||+|++++..
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~d-isl~---g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPND-LEMA---HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEE-EEES---SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEEeECceEccCCceEeee-ccCC---CcEEEEECCCCCChHHHHHHHHhhh
Confidence 34555555332211 22468889 9998 9999999999999999999999875
No 155
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.30 E-value=5.7e-08 Score=81.35 Aligned_cols=55 Identities=15% Similarity=0.055 Sum_probs=45.1
Q ss_pred ccCcccccceeeccccccccccccccCCCCCC-------eEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEP-------FVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g-------~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
...++.++++..|... .++++ +++.+++| +.++|.||||||||||+++|++.++.
T Consensus 16 ~~~lr~~~l~~~~g~~--~~~~~-l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 16 VQFLRPKSLDEFIGQE--NVKKK-LSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp -CTTSCSSGGGCCSCH--HHHHH-HHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred HHHcCCccHHHccCcH--HHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3457788888888654 57788 88888765 88999999999999999999998854
No 156
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.29 E-value=2.5e-07 Score=73.35 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=28.1
Q ss_pred ccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 47 IAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
-+...++|++++|.|+|||||||++++|++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3557789999999999999999999999887
No 157
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.29 E-value=3.6e-07 Score=69.81 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.8
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
|++++|+|||||||||+++.|++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc
Confidence 6899999999999999999998743
No 158
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.24 E-value=1.8e-07 Score=77.31 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=29.2
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
+++.+|++++|+||||||||||+++|+|...+..+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G 198 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVS 198 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC--
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccccc
Confidence 44567999999999999999999999998876543
No 159
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.23 E-value=7e-07 Score=69.90 Aligned_cols=28 Identities=36% Similarity=0.375 Sum_probs=25.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.+.+++|+|+|||||||++++|++.++.
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~ 31 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQW 31 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3578999999999999999999998764
No 160
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.22 E-value=2.7e-08 Score=79.37 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=35.4
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
|+++|+...|.. + ++|. + ++++|+||||||||||+++|++.+.+..
T Consensus 10 l~l~~~~~~~~~-------~-~~~~--~-~~~~i~GpnGsGKSTll~~i~g~~~~~~ 55 (227)
T 1qhl_A 10 LTLINWNGFFAR-------T-FDLD--E-LVTTLSGGNGAGKSTTMAAFVTALIPDL 55 (227)
T ss_dssp EEEEEETTEEEE-------E-ECHH--H-HHHHHHSCCSHHHHHHHHHHHHHHSCCT
T ss_pred EEEEeeecccCC-------E-EEEc--C-cEEEEECCCCCCHHHHHHHHhcccccCC
Confidence 667777665532 3 4443 4 7899999999999999999999987654
No 161
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.20 E-value=8.3e-07 Score=70.80 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=23.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.++++++|+|+|||||||++++|+..++
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3579999999999999999999994443
No 162
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.18 E-value=1e-06 Score=74.79 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=30.9
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
..+++ +++++.+| +++|+|||||||||++++|.+
T Consensus 15 ~~~~~-~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 15 RNLAP-GTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TTCCS-EEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceee-eEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 35677 89999999 999999999999999999986
No 163
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.18 E-value=6.4e-07 Score=73.91 Aligned_cols=48 Identities=19% Similarity=0.059 Sum_probs=40.5
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+..+++++.|... . ++ ++++ +|++++++|++||||||+++.|++.+.+
T Consensus 77 ~~~~~l~~~~~~~--~--~~-i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RL-PVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp HHHHHHHHHTTSS--C--CC-CCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC--C--ce-eecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6678888888543 2 56 8888 9999999999999999999999998854
No 164
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.17 E-value=3.4e-07 Score=76.97 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=44.3
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.++.+++.+.|... .++++ +++.+.++.+++|+|++|+|||||++.|++.+.
T Consensus 30 ~ie~~~~~~~~~~~--~~~~~-l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 30 LVESRHPRHQALST--QLLDA-IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp HHHCCCHHHHHHHH--HHHHH-HGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HhhcCCchhhhHHH--HHHHh-CCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36777777777544 67788 899999999999999999999999999998763
No 165
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.16 E-value=1.8e-07 Score=77.69 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=26.3
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+++.+|++++|+|+||||||||++.|+|...+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc
Confidence 567799999999999999999999999877554
No 166
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.16 E-value=9.2e-07 Score=76.41 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=35.8
Q ss_pred CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.++++|+ +.|.+. .. +.+.+|++++|+||||||||||++.|.+++.+
T Consensus 6 ~l~~~~~-~~~~~~-----~~---~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 6 GLELSNF-KSYRGV-----TK---VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EEEEESC-SSCCSE-----EE---EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEeCE-EEECCc-----ee---EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 4667777 566432 12 34567899999999999999999999987754
No 167
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.16 E-value=1.5e-06 Score=72.55 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=33.3
Q ss_pred cccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 44 STFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 44 ~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.+ ++|.+++|++++++|++||||||++..|++.+.+
T Consensus 96 ~~-l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 96 YR-IDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CC-CCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred cC-ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67 8999999999999999999999999999998854
No 168
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.15 E-value=1.1e-06 Score=68.06 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=26.9
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 49 PSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
-.+.+|.+++|+|||||||||+++.|+..+.
T Consensus 7 ~~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 7 HHMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp --CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3678999999999999999999999998774
No 169
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.13 E-value=9.9e-07 Score=68.45 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=30.9
Q ss_pred ccccccccC-CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640 41 PAFSTFIAP-SMVEPFVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 41 ~~l~~~vsl-~i~~g~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
+.|++ +.. .+++|++++|+|+||||||||++.|++
T Consensus 7 ~~LD~-~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 7 KSLDS-LLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHH-HTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHH-hhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45666 554 799999999999999999999999998
No 170
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.13 E-value=1.2e-06 Score=65.16 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=26.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+|+.++|+||||||||||++.+++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999998754
No 171
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.11 E-value=8.9e-07 Score=79.09 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=31.1
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
...+++|++++|+|+||||||||+++|++.+.+..
T Consensus 363 ~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~ 397 (552)
T 3cr8_A 363 PPRERQGFTVFFTGLSGAGKSTLARALAARLMEMG 397 (552)
T ss_dssp CCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred ccccccceEEEEECCCCChHHHHHHHHHHhhcccC
Confidence 34678999999999999999999999999987654
No 172
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.10 E-value=2e-06 Score=65.12 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+|++++|+|++||||||+++.|++.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999987
No 173
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.10 E-value=2.3e-06 Score=67.97 Aligned_cols=37 Identities=27% Similarity=0.223 Sum_probs=27.6
Q ss_pred ccccccCCCC---CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 43 FSTFIAPSMV---EPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 43 l~~~vsl~i~---~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
|.+ +++.++ +|.+++|.|++||||||+++.|+..+..
T Consensus 13 ~~~-~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGT-ENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccC-CCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 344 555554 9999999999999999999999998875
No 174
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.09 E-value=2.4e-06 Score=70.87 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=30.5
Q ss_pred ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+++..++|++++|+|+|||||||+++.|++.+.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 5667789999999999999999999999998854
No 175
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.08 E-value=1.1e-06 Score=72.71 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=26.4
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.+.+|++++++||||||||||+++|+ ...+.
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~ 191 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELR 191 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCc
Confidence 34579999999999999999999999 66543
No 176
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.08 E-value=2.7e-06 Score=64.89 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=27.8
Q ss_pred ccCCCCCCeEEEEecCCCCcHHHHHHHHHHH-cC
Q psy9640 47 IAPSMVEPFVIGICGGSASGKTTVATKIIES-LN 79 (199)
Q Consensus 47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~-l~ 79 (199)
+|+...++.+++|+|++||||||+++.|+.. ++
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6888889999999999999999999999987 44
No 177
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.07 E-value=1.2e-06 Score=73.98 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=33.8
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.|+..+...+++|++++|+||||||||||++.+++..
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45677337899999999999999999999999999987
No 178
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.03 E-value=2.1e-06 Score=67.57 Aligned_cols=37 Identities=11% Similarity=0.237 Sum_probs=30.5
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
+.|+..+.=.+++|++++|+||||||||||++.|++.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3455523347899999999999999999999999984
No 179
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=98.03 E-value=5.3e-06 Score=65.15 Aligned_cols=73 Identities=27% Similarity=0.454 Sum_probs=62.6
Q ss_pred ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY 198 (199)
Q Consensus 125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 198 (199)
..++.|.+ .+.+..+.|..---|+|.|+++.|.+.+.+.+|.+.+++|.++|++.+.++++||.++|.++.++
T Consensus 53 ~~V~tPl~-~~~~~~~~~~~~~vV~Ilr~G~~~~~~L~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~ 125 (209)
T 1i5e_A 53 VEIETPVS-KARAKVIAGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPSDVEER 125 (209)
T ss_dssp EEEECSSC-EEEEEEECCCCEEEEEBTTGGGGGHHHHHHHCTTSEECEEEEECCTTCSSCEEEEEECCTTTTTS
T ss_pred eEEecCCc-eeeeeEecCCceEEEEEecCChHHHHHHHHhCCCCeEEEEEEEEcCCCCceEEEEEcCCCccCCC
Confidence 45667776 44677787667778999999999999999999999999999999999999999999999887654
No 180
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.02 E-value=1.2e-06 Score=78.12 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=41.4
Q ss_pred ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
-++++...|... .++.+ +++.+ +|..++|+||||||||||++.|++.+.++.+
T Consensus 85 G~~~vk~~i~~~--~~l~~-~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 85 GLEKVKERILEY--LAVQK-LTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp SCHHHHHHHHHH--HHHHH-HSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred cHHHHHHHHHHH--HHHHH-hcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 344555555433 46777 88888 8999999999999999999999999876543
No 181
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.01 E-value=4e-06 Score=69.72 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=23.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
=++++|+|+||||||||++.|++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999876
No 182
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.99 E-value=4.4e-06 Score=64.40 Aligned_cols=28 Identities=39% Similarity=0.501 Sum_probs=24.8
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+.+++|+|++||||||+++.|++.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~ 45 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYP 45 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCE
Confidence 5689999999999999999999987643
No 183
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.99 E-value=4.1e-06 Score=64.68 Aligned_cols=25 Identities=44% Similarity=0.852 Sum_probs=21.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.+++|+|++||||||+++.|++ ++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCC
Confidence 4799999999999999999987 543
No 184
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.98 E-value=4.1e-06 Score=63.44 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=25.3
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.+|.+++|+|++||||||+++.|+..++.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46889999999999999999999987653
No 185
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.98 E-value=2.8e-06 Score=69.85 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=30.5
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccchhc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYR 93 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~~ 93 (199)
++.+|+|.|+|||||||+++.|+..++. ..+.++..|++++
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 5678999999999999999999886642 2356788899886
No 186
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.96 E-value=7.1e-06 Score=65.65 Aligned_cols=44 Identities=55% Similarity=0.863 Sum_probs=33.8
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC-------eeeeecccchhcc
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNVP-------WVTLLSMDSFYRV 94 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~-------~~~~i~~d~~~~~ 94 (199)
-.+..+|+|.|++||||||+++.|+..++.. .+.+++.|+++..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~ 69 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV 69 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccc
Confidence 3455789999999999999999999877644 2346778888763
No 187
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.95 E-value=7.2e-06 Score=61.60 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=25.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.|.++.|+|+|||||||+++.|+..++..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~ 30 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEP 30 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 35789999999999999999999988643
No 188
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.95 E-value=4.8e-06 Score=64.13 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=21.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
+++|+|++||||||+++.|++ ++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 699999999999999999999 64
No 189
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.94 E-value=7.1e-06 Score=62.38 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=28.0
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 49 PSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+...+|.++.|+|++||||||+++.|+..+..
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34568999999999999999999999988753
No 190
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.94 E-value=7e-06 Score=61.06 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+++|+|++||||||+++.|+..++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 78999999999999999999887644
No 191
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.94 E-value=3.5e-06 Score=68.39 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=27.4
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.+.+|++++|+|+||||||||++.+++.+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999999999998653
No 192
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.94 E-value=3.7e-06 Score=74.18 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=40.3
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.+++++...|... ..+++ +++.+++| +.|+||+|+|||||++.|++....+
T Consensus 41 ~~l~~lv~~l~~~--~~~~~-lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~~~ 91 (499)
T 2dhr_A 41 EELKEIVEFLKNP--SRFHE-MGARIPKG--VLLVGPPGVGKTHLARAVAGEARVP 91 (499)
T ss_dssp HHHHHHHHHHHCG--GGTTT-TSCCCCSE--EEEECSSSSSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhch--hhhhh-ccCCCCce--EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3445555555433 57888 89999999 9999999999999999999987644
No 193
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.91 E-value=7.5e-06 Score=63.67 Aligned_cols=32 Identities=31% Similarity=0.289 Sum_probs=29.0
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.+.+.+|.+++|+|++||||||+++.|++.+.
T Consensus 19 ~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 19 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45678899999999999999999999998875
No 194
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.90 E-value=1.2e-05 Score=61.09 Aligned_cols=31 Identities=35% Similarity=0.589 Sum_probs=26.9
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+.++.++.|+|++||||||+++.|+..++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 32 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLP 32 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 4578899999999999999999999877543
No 195
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.88 E-value=2.3e-06 Score=77.08 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=39.3
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeee
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL 85 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~ 85 (199)
.++++ +++.+.+|+.++|+||||||||||++.|++.+.+...+.
T Consensus 48 ~~l~~-l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~ 91 (604)
T 3k1j_A 48 HAVEV-IKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLED 91 (604)
T ss_dssp HHHHH-HHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEE
T ss_pred hhHhh-ccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCe
Confidence 67888 999999999999999999999999999999987765443
No 196
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.86 E-value=1.2e-05 Score=62.53 Aligned_cols=28 Identities=32% Similarity=0.639 Sum_probs=24.2
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.++.+++|+|++||||||+++.|+. ++.
T Consensus 2 ~~~~~I~i~G~~GSGKST~~~~L~~-lg~ 29 (218)
T 1vht_A 2 SLRYIVALTGGIGSGKSTVANAFAD-LGI 29 (218)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH-cCC
Confidence 3568999999999999999999987 543
No 197
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.85 E-value=1e-05 Score=61.09 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=27.3
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 49 PSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
..+.++.++.|+|++||||||+++.|+..++.
T Consensus 6 ~~~~~~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 6 PEFMLLPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CTTCCCCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred cccccCCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 34567788999999999999999999987754
No 198
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.84 E-value=1.7e-05 Score=70.13 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=27.0
Q ss_pred ccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640 47 IAPSMVEPFVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
+.+.+.++..+.|+|.+||||||+++.|+.
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 566777899999999999999999999876
No 199
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.84 E-value=9.3e-06 Score=66.98 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=32.7
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCC---Ceeeeecccch
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNV---PWVTLLSMDSF 91 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~---~~~~~i~~d~~ 91 (199)
.+|++++++|+|||||||+++.|++.+.+ ..+.++..|.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 57899999999999999999999998853 25566666654
No 200
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.83 E-value=1e-05 Score=61.20 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.9
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
+|.++.|.|++||||||+++.|+..++
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999998765
No 201
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.82 E-value=1.2e-05 Score=63.54 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=26.7
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 49 PSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
-...+|.+++|+|++||||||+++.|++.++.
T Consensus 11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp ---CCCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35778999999999999999999999987763
No 202
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.81 E-value=1.6e-05 Score=60.04 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=24.9
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.+..+.|+|++||||||+++.|+..++..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~ 32 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRI 32 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35689999999999999999999887654
No 203
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.81 E-value=1e-05 Score=68.11 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=33.3
Q ss_pred cccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 28 LEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 28 l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
++++...|... ...+|++ ++++++ .|+++|++|||||||++.|.|.
T Consensus 11 l~~~~~~~~~~~~~~~l~~-i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 11 IQRACTALGDHGDSSALPT-LWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp TTTTTTSCSSCCSSCCC-----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhCcccccccccc-ccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 55666666432 2357888 888887 9999999999999999999984
No 204
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.80 E-value=1.4e-05 Score=61.27 Aligned_cols=27 Identities=37% Similarity=0.367 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+|.+|+|.|++||||||+++.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999877
No 205
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.80 E-value=1.2e-05 Score=64.08 Aligned_cols=39 Identities=23% Similarity=0.531 Sum_probs=29.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 94 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~ 94 (199)
++.+++|.|||||||||+++.|+..++.. .+..+.+++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~---~~d~g~~~r~ 46 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGAR---YLDTGAMYRI 46 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCE---EEEHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC---cccCCcHHHH
Confidence 45699999999999999999999887633 2344444443
No 206
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.79 E-value=1.2e-05 Score=59.61 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=23.5
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+.+.+ .+.+|+|||||||||++..|.-.+
T Consensus 18 ~i~f~~-g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 18 VVEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence 334444 488999999999999999997544
No 207
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.79 E-value=1.5e-05 Score=60.60 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=26.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+.++.+++|+|++||||||+++.|+..++.
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346789999999999999999999987764
No 208
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.79 E-value=1.2e-05 Score=61.28 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.7
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
...++|+|+||||||||++.+++...+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 358999999999999999999987643
No 209
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.77 E-value=2.2e-05 Score=66.02 Aligned_cols=34 Identities=38% Similarity=0.580 Sum_probs=29.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 91 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~ 91 (199)
.+++|+||||||||||++.|+..++ +.+++.|++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~---~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN---GEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT---EEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC---Cceeccccc
Confidence 5899999999999999999999876 456778877
No 210
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.77 E-value=1.5e-05 Score=60.88 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+++|.|++||||||+++.|+..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6899999999999999999998764
No 211
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.77 E-value=1.8e-05 Score=60.55 Aligned_cols=25 Identities=44% Similarity=0.660 Sum_probs=23.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
+..+|+|+|++||||||+++.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4679999999999999999999886
No 212
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.77 E-value=1.8e-05 Score=60.78 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=25.5
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+|.+|+|.|++||||||+++.|+..++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5789999999999999999999988765
No 213
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.77 E-value=1.4e-05 Score=64.15 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=27.6
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
...++.++.|+|++||||||+++.|+..++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567889999999999999999999999876
No 214
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.76 E-value=1.2e-05 Score=69.64 Aligned_cols=49 Identities=18% Similarity=0.053 Sum_probs=39.0
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+..+++++.|... . .+ +++. ++.+++++|++||||||++..|++.+...
T Consensus 77 ~v~~~L~~~~~~~--~--~~-i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 77 TVYEALKEALGGE--A--RL-PVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp HHHHHHHHHTTSS--C--CC-CCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCC--c--cc-ccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4455677777543 1 56 7887 89999999999999999999999988643
No 215
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.75 E-value=1.8e-05 Score=61.06 Aligned_cols=29 Identities=28% Similarity=0.233 Sum_probs=25.7
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
..+|.+|+|.|++||||||+++.|+..++
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999987654
No 216
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.74 E-value=2.4e-05 Score=62.83 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=27.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 91 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~ 91 (199)
.+++|+||+|||||||++.|++.++.. +++.|..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~---~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWP---VVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCC---EEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCe---EEeccHH
Confidence 378999999999999999999987643 3445543
No 217
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.74 E-value=1.7e-05 Score=67.96 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=25.7
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
.+++|..++|+|++|||||||+++|++
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 678899999999999999999999999
No 218
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.73 E-value=1.8e-05 Score=59.59 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=21.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
.++.++.|.|++||||||+++.|+..++...
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~ 33 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSF 33 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 3578999999999999999999998876543
No 219
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.73 E-value=2.2e-05 Score=59.47 Aligned_cols=28 Identities=32% Similarity=0.625 Sum_probs=24.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
++.+|+|+|++||||||+++.|+..++.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999887764
No 220
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.73 E-value=1.9e-05 Score=58.41 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.+++|+|++||||||+++.| ..++..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAK 27 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCc
Confidence 37899999999999999999 665543
No 221
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.73 E-value=1.8e-05 Score=60.59 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=21.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..++|+|++|||||||++.|++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999999864
No 222
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.73 E-value=8.2e-06 Score=68.98 Aligned_cols=38 Identities=18% Similarity=0.416 Sum_probs=33.2
Q ss_pred ccccccccCCCCCCeE--EEEecCCCCcHHHHHHHHHHHcC
Q psy9640 41 PAFSTFIAPSMVEPFV--IGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~i--v~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.+++. +++.+++|++ ++|+|++||||||++++|++.++
T Consensus 10 ~il~~-l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQL-LDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHH-HHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 46677 8888999988 99999999999999999998653
No 223
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.72 E-value=2.1e-05 Score=60.72 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=25.2
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.++|.+|+|.|++||||||+++.|+..++
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999997653
No 224
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.72 E-value=1.9e-05 Score=59.34 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
++.|+|++||||||+++.|+..++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~ 31 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV 31 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 58999999999999999999987643
No 225
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.71 E-value=2e-05 Score=60.06 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=23.0
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
-.+++|+|+||||||||++.|++.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 35899999999999999999998763
No 226
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.71 E-value=1.4e-05 Score=62.90 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=29.7
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
+.|++.+.-.+++|++++|.|+||||||||+..++..
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4566622668999999999999999999997766553
No 227
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.71 E-value=1.8e-05 Score=59.30 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
++|..++|+|++|+|||||++.|++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998753
No 228
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.69 E-value=3.6e-05 Score=61.42 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=27.0
Q ss_pred cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
.+++ ++....+| +.|.||+|+||||+++.|++.++.+.
T Consensus 36 ~~~~-~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~~ 73 (257)
T 1lv7_A 36 RFQK-LGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVPF 73 (257)
T ss_dssp GC------CCCCE--EEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred HHHH-cCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCCE
Confidence 3445 55555555 88999999999999999999886543
No 229
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.69 E-value=3.2e-05 Score=59.32 Aligned_cols=26 Identities=46% Similarity=0.738 Sum_probs=23.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+++|.|++||||||+++.|+..++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~ 29 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP 29 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 89999999999999999999987643
No 230
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.69 E-value=1.2e-05 Score=61.66 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=29.9
Q ss_pred eeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640 32 IKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 32 s~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
++.|++. ..++++ +++..++. .++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~~-~~~l~~-~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGF-SSVLQF-LGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp --------CHHHHH-HTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH-HHHHHH-hhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 3455554 367888 89988766 589999999999999999865
No 231
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.68 E-value=9.8e-06 Score=62.59 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999988753
No 232
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.67 E-value=3.9e-05 Score=58.89 Aligned_cols=31 Identities=29% Similarity=0.376 Sum_probs=26.4
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.-.++.+|+|.|++||||||+++.|+..++.
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3456679999999999999999999987754
No 233
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.67 E-value=2.9e-05 Score=58.07 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=20.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHH
Q psy9640 55 FVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
.++.|+|++||||||+++.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 234
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.67 E-value=2.8e-05 Score=63.72 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=26.1
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
....|.++.|+|+|||||||+++.|+..+.
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688999999999999999999988763
No 235
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.66 E-value=2.8e-05 Score=59.20 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=26.0
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
++.+.+|+|+|++||||||+++.|+..++.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345679999999999999999999988763
No 236
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.65 E-value=3.8e-05 Score=59.15 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=20.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.|.|+||||||||||++.|...+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999987653
No 237
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.64 E-value=3.2e-05 Score=65.09 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=25.2
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.++.+++|+|++|||||||++.|++.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 4589999999999999999999998763
No 238
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.64 E-value=1.9e-05 Score=67.83 Aligned_cols=35 Identities=11% Similarity=0.253 Sum_probs=27.9
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~ 75 (199)
+.|+..+.=.+++|++++|+||||||||||++.|+
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 34444223478999999999999999999999765
No 239
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.64 E-value=4.8e-05 Score=58.39 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=26.7
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
-..+.+|+|+|++||||||+++.|+..++..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 3566799999999999999999999877644
No 240
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.63 E-value=3.5e-05 Score=60.12 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=25.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
++|.++.|+|++||||||+++.|+..++.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 46789999999999999999999988764
No 241
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.63 E-value=4.6e-05 Score=56.75 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
++++|.|++||||||+++.|+..++.+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~ 35 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEV 35 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 6899999999999999999998877543
No 242
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.62 E-value=3.4e-05 Score=58.29 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=26.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 91 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~ 91 (199)
.+|+|+|++||||||+++.|+..++.+ ++..|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~---~id~D~~ 36 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVG---LLDTDVA 36 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCC---EEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCC---EEeCchH
Confidence 468999999999999999999887654 3344444
No 243
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.62 E-value=3.5e-05 Score=58.19 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=22.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.+|.|.|++||||||+++.|+..++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999998775
No 244
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.62 E-value=3.5e-05 Score=60.41 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=24.5
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.++.+++|+|++||||||+++.|+..++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45679999999999999999999987754
No 245
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.61 E-value=8.4e-06 Score=67.97 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=39.3
Q ss_pred cccccceeeccccccccccccccCCCCCCeE--EEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFV--IGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~i--v~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
..-++++..|... .+++. ++..++.|++ +.+.||+|+||||+++.+++.+.+
T Consensus 19 ~rp~~~~~~~g~~--~~~~~-L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 19 YRPETLDEVYGQN--EVITT-VRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp TCCSSGGGCCSCH--HHHHH-HHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred hCCCcHHHhcCcH--HHHHH-HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3444455555332 56777 7778888888 999999999999999999997643
No 246
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.60 E-value=5.3e-05 Score=57.15 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=24.6
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.+.+++|+|++||||||+++.|+..++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568999999999999999999987763
No 247
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.60 E-value=4.6e-05 Score=60.71 Aligned_cols=30 Identities=20% Similarity=0.031 Sum_probs=26.4
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
..++.+++|.|++||||||+++.|+..++.
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457889999999999999999999987754
No 248
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.59 E-value=4.9e-05 Score=58.88 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=22.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+++|.|++||||||+++.|+..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIP 27 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 58999999999999999998877644
No 249
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.59 E-value=3.8e-05 Score=58.34 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHc
Q psy9640 56 VIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999877
No 250
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.58 E-value=4.5e-05 Score=62.90 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=36.5
Q ss_pred cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
+..+++...|..... .. +++..+ |.+++++|++|+||||++..|++.+.
T Consensus 75 ~~~~~l~~~~~~~~~---~~-i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 75 IVYDELSNLFGGDKE---PK-VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp HHHHHHHHHTTCSCC---CC-CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccc---cc-cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345566666754311 12 566766 99999999999999999999998874
No 251
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.58 E-value=2.8e-05 Score=64.02 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=23.9
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
+..++.+++|+|++|+|||||++.|++.
T Consensus 4 ~~~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CCCEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3345568999999999999999999875
No 252
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.57 E-value=3.8e-05 Score=59.96 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.9
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.+.++.|+|++||||||+++.|+..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999988764
No 253
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.57 E-value=4.4e-05 Score=57.93 Aligned_cols=34 Identities=26% Similarity=0.156 Sum_probs=26.3
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLNV--PWVTLLSM 88 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~ 88 (199)
.+++|+|+||||||||+..|+..+.. ..++++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 47999999999999999999987632 24455443
No 254
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.56 E-value=1.9e-05 Score=73.66 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=28.9
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVAT 72 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~ 72 (199)
.=|+| |+++|+.+.+++|.|.||||||||+.
T Consensus 24 hNLkn-i~v~iP~~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 24 HNLKD-ISVKVPRDALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp TTCCS-EEEEEESSSEEEEESSTTSSHHHHHT
T ss_pred cCCCC-eeEEecCCCEEEEECCCCCCHHHHHH
Confidence 45799 99999999999999999999999984
No 255
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.56 E-value=5.4e-05 Score=58.45 Aligned_cols=37 Identities=24% Similarity=0.435 Sum_probs=28.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 92 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~ 92 (199)
...+++|+|++||||||+++.|+..++. .++..|.++
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~---~vid~D~~~ 47 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGA---HVVNVDRIG 47 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCC---EEEEHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCC---EEEECcHHH
Confidence 4578999999999999999999987653 344555553
No 256
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.56 E-value=6.1e-05 Score=58.42 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=22.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.++|+|++||||||+++.|+..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 58999999999999999998877644
No 257
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.55 E-value=4e-05 Score=57.11 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.+++|+|++||||||+++.|+..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 368999999999999999999877643
No 258
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.55 E-value=6.5e-05 Score=55.70 Aligned_cols=26 Identities=42% Similarity=0.534 Sum_probs=23.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+|+|.|++||||||+++.|+..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~ 27 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIP 27 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 68999999999999999999877643
No 259
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.54 E-value=4.8e-05 Score=57.82 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=20.9
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.++++ +++..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~-~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLAS-LGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHH-hhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 46677 88887655 7899999999999999999873
No 260
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.53 E-value=6.6e-05 Score=69.86 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=30.5
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
++.++++..+.|+||||||||||++.|++.++..
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 5578999999999999999999999999987654
No 261
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.53 E-value=5.2e-05 Score=62.23 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=29.1
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
++.+.++..+.|.||+|+||||+++.|++.++.
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~ 75 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 75 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 446788899999999999999999999998764
No 262
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.51 E-value=5.7e-05 Score=57.12 Aligned_cols=23 Identities=48% Similarity=0.528 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHc
Q psy9640 56 VIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 263
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.50 E-value=2.7e-05 Score=73.18 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=28.4
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVA 71 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl 71 (199)
.=|+| |+++|+++.+++|.|.||||||||+
T Consensus 12 hNLkn-i~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 12 HNLKN-ITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TTCCS-BCCEEETTSEEEEEESTTSSSHHHH
T ss_pred cccCc-ceeccCCCcEEEEECCCCCcHHHHH
Confidence 45799 9999999999999999999999998
No 264
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.50 E-value=1.2e-05 Score=68.08 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=33.2
Q ss_pred cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
..+.++|++.+|... .+.++ +++.| +|+|++|+|||||++.|.+.
T Consensus 16 ~~v~~~~l~~~~~~k--~~~~~-~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 16 GYVGFANLPNQVHRK--SVKKG-FEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp -----CCHHHHHHTH--HHHHC-CEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred ceEEeccchHHhCCe--eecCC-CCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 458899999988654 56777 77765 99999999999999998654
No 265
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.49 E-value=4.6e-05 Score=56.43 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=21.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy9640 55 FVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
..++|+|++|+|||||++.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999874
No 266
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.49 E-value=2.2e-05 Score=69.34 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=31.0
Q ss_pred cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+++ +++.+.+| +.+|+|+||||||||+..|...+
T Consensus 50 ~~~~-~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQ-LELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSC-EEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceee-EEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 5577 88899999 99999999999999999997763
No 267
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.45 E-value=6.8e-05 Score=58.24 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..+.+|+|||||||||++..|.-.+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999986544
No 268
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.45 E-value=3.1e-05 Score=73.07 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=28.4
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVA 71 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl 71 (199)
.=|+| |+++|+++.+++|.|.||||||||+
T Consensus 34 hNLkn-i~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 34 HNLRS-VDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SSCCS-EEEEEESSSEEEEEESTTSSHHHHH
T ss_pred cccCc-eeeeccCCCEEEEECCCCCcHHHHH
Confidence 45799 9999999999999999999999998
No 269
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.45 E-value=0.00014 Score=60.42 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=28.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 91 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~ 91 (199)
++.+++|+||||||||||+..|+..++ ..+++.|+.
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTT---EEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCc---cceeecCcc
Confidence 356899999999999999999998775 345666664
No 270
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.45 E-value=3.2e-05 Score=72.83 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=28.3
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVA 71 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl 71 (199)
.=|+| |+++|+++.+++|.|.||||||||+
T Consensus 32 hNLkn-i~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 32 HNLKN-IDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SSCCS-EEEEEETTSEEEEEESTTSSHHHHH
T ss_pred ccCCc-eeeeccCCcEEEEECCCCCCHHHHH
Confidence 45799 9999999999999999999999997
No 271
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.44 E-value=8.9e-05 Score=59.58 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.++.+|.|+|++||||||+++.|+..+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998863
No 272
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.44 E-value=8.2e-05 Score=60.64 Aligned_cols=27 Identities=37% Similarity=0.623 Sum_probs=23.3
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
....+|+|+|++||||||+++.|+. ++
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~-lg 99 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN-LG 99 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH-HT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CC
Confidence 4567999999999999999999984 44
No 273
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.40 E-value=5.1e-05 Score=66.56 Aligned_cols=39 Identities=31% Similarity=0.494 Sum_probs=32.6
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
..+++ +++.+++| +.|+||+|+|||||++.+++..+.+.
T Consensus 39 ~~~~~-~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~f 77 (476)
T 2ce7_A 39 SKFNR-IGARMPKG--ILLVGPPGTGKTLLARAVAGEANVPF 77 (476)
T ss_dssp HHHHT-TTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred HHHhh-cCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 45677 77888777 88999999999999999999876553
No 274
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.39 E-value=6e-05 Score=56.83 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy9640 56 VIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.++|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 275
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.37 E-value=0.00015 Score=60.76 Aligned_cols=37 Identities=11% Similarity=0.346 Sum_probs=29.1
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 91 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~ 91 (199)
.++.++.|+||+|||||||+..|+..++. .+++.|..
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~---eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPL---EVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCE---EEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCC---cEEccccc
Confidence 35679999999999999999999987753 34555554
No 276
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.37 E-value=0.0001 Score=57.40 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=24.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
++.++.|.|++||||||+++.|+..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 4568999999999999999999988764
No 277
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.36 E-value=9.1e-05 Score=55.57 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 54 PFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
...++++|++|+|||||++.|++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 278
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.36 E-value=0.00012 Score=56.78 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=24.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+.+++|+|++||||||+++.|+..++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 568999999999999999999988764
No 279
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.35 E-value=0.00018 Score=56.60 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=29.6
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+-..+++.++.|+||.||||+|.++.|+..++..
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 5567889999999999999999999999988654
No 280
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.35 E-value=0.00019 Score=59.82 Aligned_cols=34 Identities=35% Similarity=0.457 Sum_probs=27.3
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 91 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~ 91 (199)
.++.|+||+|||||||++.|+..++. .+++.|.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~---~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPC---ELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCE---EEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC---cEEeccch
Confidence 58999999999999999999998763 34455543
No 281
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.32 E-value=0.00014 Score=57.06 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+++|.|++||||||+++.|+..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999987753
No 282
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.31 E-value=0.00016 Score=56.88 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=25.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
..+.++.|.|+.||||||+++.|+..++.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45678999999999999999999988764
No 283
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.31 E-value=0.00019 Score=55.67 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.++|.|++||||||+++.|+..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999987754
No 284
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.00033 Score=60.60 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=28.9
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
+.++++.=+.+.||+|||||+|++.+++.++.+..
T Consensus 201 ~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~ 235 (428)
T 4b4t_K 201 IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFI 235 (428)
T ss_dssp HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEE
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 35566667999999999999999999998876543
No 285
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.29 E-value=0.00015 Score=57.87 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=25.0
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
...+|.++.|.|++||||||+++.|...+.
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999999988774
No 286
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00035 Score=59.92 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=28.0
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
.++++.=+.+.||+|||||+|++.+++..+.+..
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~ 211 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI 211 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce
Confidence 4555566899999999999999999998876543
No 287
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.00036 Score=60.50 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=29.3
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
+.++++.=+.+.||+|||||+|++.+++.++.+..
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~ 244 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI 244 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 35667777999999999999999999998876543
No 288
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.00041 Score=59.97 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=29.2
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
+.++++.=+.+.||+|+|||+|++.+++..+.+..
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi 245 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL 245 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE
Confidence 45666677999999999999999999998876543
No 289
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.28 E-value=0.00027 Score=60.71 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=28.0
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS 90 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~ 90 (199)
..+++|+||||||||||+..|+..++. .+++.|+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~---~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNG---EVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTE---EEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCC---eEeecCc
Confidence 357899999999999999999988763 3566666
No 290
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.26 E-value=0.00019 Score=59.96 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=21.9
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
.+.+.+ .+.+|+|||||||||++..|..
T Consensus 18 ~i~f~~-~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 18 VVEFKE-GINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEcCCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 334434 5889999999999999998754
No 291
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.26 E-value=0.00014 Score=57.59 Aligned_cols=30 Identities=30% Similarity=0.252 Sum_probs=22.7
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
...+|.+|.|.|++||||||+++.|+..+.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999988764
No 292
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00028 Score=61.48 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=29.6
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
.+.++++.=+.+.||+|||||+|++.+++.++.+.
T Consensus 237 ~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f 271 (467)
T 4b4t_H 237 TLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF 271 (467)
T ss_dssp HHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE
T ss_pred HCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe
Confidence 34667777899999999999999999999887654
No 293
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.25 E-value=0.00021 Score=56.44 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=24.6
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
+|.+++|.|..||||||+++.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999998874
No 294
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.24 E-value=0.00021 Score=55.96 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=25.5
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.+|.+|.|.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999887753
No 295
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.22 E-value=0.00014 Score=60.30 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHH-cCC
Q psy9640 56 VIGICGGSASGKTTVATKIIES-LNV 80 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~-l~~ 80 (199)
.+.|.||+|+||||+++.|++. +.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~ 63 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGP 63 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3999999999999999999994 444
No 296
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.21 E-value=0.00021 Score=61.97 Aligned_cols=27 Identities=41% Similarity=0.507 Sum_probs=25.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
++.+++++|++||||||++..|+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999998774
No 297
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.20 E-value=0.00021 Score=61.51 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=26.8
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.+.-.++.++.|+|++||||||+++.|+..++
T Consensus 252 ~~~~~~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 252 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp CSCCSSCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred ccCCCCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34456789999999999999999999987654
No 298
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.20 E-value=0.00022 Score=64.94 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=26.8
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
++.++++..++|+|++|+|||||++.|++...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 45778999999999999999999999997654
No 299
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.19 E-value=0.00026 Score=60.07 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=23.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+..++|+|+|||||||+++.|+..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999998765
No 300
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.17 E-value=0.00019 Score=56.52 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=22.7
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+...|+|+|++|+|||||++.|++..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 34679999999999999999998754
No 301
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.16 E-value=0.00034 Score=58.05 Aligned_cols=35 Identities=43% Similarity=0.523 Sum_probs=28.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS 90 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~ 90 (199)
.+.+++|+||+|||||||+..|+..++. -+++.|+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~---~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPV---ELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCE---EEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCC---cEEeccc
Confidence 4568999999999999999999988753 3455554
No 302
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.16 E-value=0.00025 Score=57.72 Aligned_cols=24 Identities=33% Similarity=0.309 Sum_probs=21.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.++.|+|++||||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999999998753
No 303
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.15 E-value=0.00031 Score=55.26 Aligned_cols=29 Identities=28% Similarity=0.194 Sum_probs=26.9
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.+|.++.+.|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47899999999999999999999998875
No 304
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.15 E-value=0.00032 Score=55.47 Aligned_cols=30 Identities=30% Similarity=0.234 Sum_probs=26.0
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
-.+|.+|.+.|++||||||+++.|...+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 357999999999999999999999887653
No 305
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.15 E-value=0.00017 Score=62.66 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=32.9
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.|++ +...+.+|+++.|.|++|+|||||+..++...
T Consensus 191 ~~LD~-~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 191 TELDR-MTSGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHH-HHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHh-hcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788 77789999999999999999999999998755
No 306
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00032 Score=52.79 Aligned_cols=27 Identities=30% Similarity=0.220 Sum_probs=23.3
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+...++++|++|||||||++.|.+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998754
No 307
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.12 E-value=0.0003 Score=55.15 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=24.6
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
+|.+|.+.|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999988774
No 308
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.11 E-value=0.00031 Score=51.23 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=21.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
-.++++|++|+|||||++.+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 309
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.10 E-value=0.0003 Score=52.02 Aligned_cols=26 Identities=38% Similarity=0.433 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
++...|+++|++|+|||||++.+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999763
No 310
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.10 E-value=0.00032 Score=54.61 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.2
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.|..+.|+||||||||||+..|+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 68899999999999999998887654
No 311
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.00037 Score=60.39 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=29.0
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
+.++++.=+.+.||+|||||+|++.+++..+.+.
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f 243 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQTNATF 243 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE
Confidence 4566777799999999999999999999887654
No 312
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.10 E-value=0.00056 Score=54.12 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=26.5
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
.+..+.-+.|.||+|+||||+++.++..++.+.
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~ 67 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF 67 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 345556688999999999999999999876543
No 313
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.09 E-value=0.00023 Score=59.97 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=29.9
Q ss_pred cccccccc-CCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 41 PAFSTFIA-PSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 41 ~~l~~~vs-l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.|+..+. =.+++|+++.|.|++|||||||+..++...
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555223 368899999999999999999998887654
No 314
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.09 E-value=0.00033 Score=50.76 Aligned_cols=24 Identities=17% Similarity=0.497 Sum_probs=21.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..++++|++|||||||++.+.+..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998754
No 315
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.09 E-value=0.00044 Score=50.67 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
++...++++|++|+|||||++.+.+..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 455789999999999999999997643
No 316
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.08 E-value=0.00046 Score=55.90 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=25.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.++.-+.|.||+|+||||+++.+++.++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 356789999999999999999999987543
No 317
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.08 E-value=0.00036 Score=50.61 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHc
Q psy9640 56 VIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 318
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.07 E-value=0.0004 Score=51.56 Aligned_cols=27 Identities=15% Similarity=0.184 Sum_probs=23.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..+..+.|.||+|+||||+++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999998876
No 319
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.07 E-value=0.0003 Score=60.74 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
...++|+|+||||||||++.|+|..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 4689999999999999999999864
No 320
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.07 E-value=0.00039 Score=50.49 Aligned_cols=25 Identities=12% Similarity=0.403 Sum_probs=21.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
...++++|++|+|||||++.+.+..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 3578999999999999999998754
No 321
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.06 E-value=0.0004 Score=58.17 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=29.3
Q ss_pred cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.|+..+.=.+++|+++.|.|++|||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344422236899999999999999999999999875
No 322
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.06 E-value=0.00026 Score=57.05 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..++++|++|||||||++.|.|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998754
No 323
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.06 E-value=0.00017 Score=57.87 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=24.9
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.+++.+|+|.|+.||||||+++.|+..+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46789999999999999999999988774
No 324
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.05 E-value=0.00039 Score=53.92 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=24.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
.+..+.|.||+|+||||+++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999999988764
No 325
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.05 E-value=0.00035 Score=56.78 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=24.6
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
+...+.|.||+|+||||+++.|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 3468999999999999999999998744
No 326
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.04 E-value=0.00046 Score=55.51 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=27.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
+..+.-+.|.||+|+||||+++.+++.++.+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~ 79 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETNATF 79 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 45677799999999999999999999876543
No 327
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.04 E-value=0.0004 Score=50.48 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=21.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..++++|++|+|||||++.+.+.-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 578999999999999999998753
No 328
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.03 E-value=0.00042 Score=50.70 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..++++|++|+|||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 478999999999999999998753
No 329
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.02 E-value=0.00048 Score=53.66 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 56 VIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
++.|+||.||||+|.++.|+..++...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ 28 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH 28 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE
Confidence 688999999999999999999887543
No 330
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.02 E-value=0.00026 Score=60.59 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=25.0
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.+..+..++|+|++|+|||||++.|.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5678889999999999999999999876
No 331
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.02 E-value=0.00054 Score=51.40 Aligned_cols=26 Identities=15% Similarity=0.380 Sum_probs=22.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+...|+++|++|+|||||++.|.+..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 45679999999999999999998853
No 332
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.01 E-value=0.00044 Score=50.50 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=21.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
-.++++|++|+|||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998764
No 333
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.01 E-value=0.00042 Score=50.61 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
-.++++|++|+|||||++.+.+.-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998643
No 334
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.01 E-value=0.00044 Score=50.42 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=21.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
-.++++|++|+|||||++.+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 335
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.00 E-value=0.00045 Score=50.29 Aligned_cols=23 Identities=13% Similarity=0.485 Sum_probs=20.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy9640 55 FVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
..++++|++|+|||||++.+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 336
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.00 E-value=0.00058 Score=56.99 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=25.7
Q ss_pred CCCe--EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 52 VEPF--VIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 52 ~~g~--iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
..+. .+.|.||+|+|||||++.+++.+...
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 3455 89999999999999999999988654
No 337
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.00 E-value=0.00047 Score=50.93 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+...++++|++|||||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34579999999999999999998754
No 338
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.99 E-value=0.00046 Score=50.90 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=21.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..++++|++|+|||||++.+.+..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998743
No 339
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.98 E-value=0.0005 Score=50.75 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
+...++++|++|+|||||++.+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999875
No 340
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.98 E-value=0.00041 Score=50.71 Aligned_cols=24 Identities=13% Similarity=0.516 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 54 PFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
...|+++|++|+|||||++.+.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999999864
No 341
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.94 E-value=0.00074 Score=52.25 Aligned_cols=29 Identities=34% Similarity=0.469 Sum_probs=25.7
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
..+|+|.|+.||||||+.+.|+..++.+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~ 34 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPL 34 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCE
Confidence 45899999999999999999999887653
No 342
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.94 E-value=0.00049 Score=60.81 Aligned_cols=30 Identities=7% Similarity=0.130 Sum_probs=27.2
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
.+.|.++.++|.|||||||+.+.|+..++.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999998874
No 343
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.94 E-value=0.00055 Score=49.88 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy9640 55 FVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
..++++|++|+|||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 344
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.93 E-value=0.00034 Score=59.24 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=20.9
Q ss_pred CCeE-EEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFV-IGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~i-v~IvG~SGsGKSTLl~~L~~~l 78 (199)
.|.. ++|+|++|||||||++.|++..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 3444 9999999999999999998754
No 345
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.93 E-value=0.00032 Score=65.23 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=30.8
Q ss_pred ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.++.+.++..+.+.||+|||||||++.|++.++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 46677899999999999999999999999988644
No 346
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.92 E-value=0.00047 Score=50.69 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.-.++++|++|+|||||++.+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3579999999999999999997643
No 347
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.92 E-value=0.00045 Score=57.35 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..+..+.|.||+|+|||||++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999876
No 348
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.92 E-value=0.00042 Score=50.73 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=19.3
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q psy9640 56 VIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~ 76 (199)
.++++|++|+|||||++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999874
No 349
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.92 E-value=0.00057 Score=50.98 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=21.8
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
...|+|+|++|+|||||++.+.+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998743
No 350
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.92 E-value=0.00059 Score=50.81 Aligned_cols=24 Identities=17% Similarity=0.498 Sum_probs=21.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..|+++|++|+|||||++.|.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998754
No 351
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.91 E-value=0.00056 Score=52.77 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
+-..++|+|.+|||||||++.|++.+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999999988753
No 352
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.91 E-value=0.00042 Score=51.87 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.-..++++|++|||||||++.+.+.-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34589999999999999999998753
No 353
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.90 E-value=0.00061 Score=51.34 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+-..++|+|++|+|||||++.+++..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999998887653
No 354
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.90 E-value=0.0006 Score=51.32 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..-..|+|+|++|+|||||++.|.+.-
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 344679999999999999999998743
No 355
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.90 E-value=0.00058 Score=51.36 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.....++++|++|+|||||++.|.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34578999999999999999999864
No 356
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.90 E-value=0.00062 Score=51.98 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
..+.|.||+|+|||||++.++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999988764
No 357
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.90 E-value=0.00063 Score=49.50 Aligned_cols=23 Identities=35% Similarity=0.289 Sum_probs=20.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHc
Q psy9640 56 VIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.++++|++|+|||||++.+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998654
No 358
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.89 E-value=0.0006 Score=50.22 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy9640 55 FVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
..++++|++|+|||||++.+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999864
No 359
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.88 E-value=0.00064 Score=50.97 Aligned_cols=26 Identities=15% Similarity=0.451 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+...|+++|.+|+|||||++.|++..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCC
Confidence 34689999999999999999998753
No 360
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.88 E-value=0.00071 Score=50.12 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+.-.++++|++|+|||||++.+.+..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 344679999999999999999998643
No 361
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.88 E-value=0.00054 Score=50.86 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=23.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..+..+.|.||+|+||||+++.++..+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998876
No 362
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.87 E-value=0.00067 Score=50.32 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+...|+++|++|+|||||++.+.+..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC
Confidence 34679999999999999999998743
No 363
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.87 E-value=0.00067 Score=50.14 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.-.++++|++|+|||||++.+.+..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34579999999999999999998754
No 364
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.86 E-value=0.00034 Score=55.83 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=26.1
Q ss_pred ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+.....+| +.|.||+|+||||+++.|++.+..+
T Consensus 39 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 39 LGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp HSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred CCCCCCce--EEEECCCCCcHHHHHHHHHHHhCCC
Confidence 34444555 7899999999999999999887644
No 365
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.86 E-value=0.0007 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
-..++++|++|+|||||++.+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998754
No 366
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.84 E-value=0.00074 Score=49.97 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=21.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..++++|++|+|||||++.+.+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 578999999999999999998753
No 367
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.84 E-value=0.00057 Score=54.41 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+.-.|+|+|.+|+|||||++.|++.-
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCC
Confidence 345689999999999999999998743
No 368
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.84 E-value=0.00091 Score=50.33 Aligned_cols=25 Identities=12% Similarity=0.457 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
....|+++|++|+|||||++.+.+.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3467999999999999999999874
No 369
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.84 E-value=0.00075 Score=50.57 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.+...++++|++|+|||||++.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998754
No 370
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.84 E-value=0.00071 Score=49.94 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.-.++++|++|+|||||++.+.+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc
Confidence 4579999999999999999998643
No 371
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.83 E-value=0.00063 Score=49.60 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy9640 55 FVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
..++++|++|+|||||++.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 36899999999999999998653
No 372
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.83 E-value=0.00072 Score=50.34 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
....++++|++|+|||||++.+.+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34679999999999999999998754
No 373
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=96.82 E-value=0.00013 Score=53.96 Aligned_cols=45 Identities=7% Similarity=-0.088 Sum_probs=31.2
Q ss_pred eecceecCCeeeeeeEE------eccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 135 YEGKRCAVSKICGVSIL------RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 135 ~~g~~lSgGq~Qrvaia------RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
..+.+|||||+||++|| ||+.. +.+.+.+.... +.++|.++||.+
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~ 124 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE 124 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHH
Confidence 35678999999999876 66643 44444443332 567899999874
No 374
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.82 E-value=0.00051 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy9640 56 VIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.++++|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999864
No 375
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.82 E-value=0.0013 Score=53.65 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=27.4
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
.++.+..+.+.||+|+|||+|++.|+..++.+.
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~ 64 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINP 64 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 345567888999999999999999999886543
No 376
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.82 E-value=0.00044 Score=51.08 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.9
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 54 PFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
-..|+++|++|+|||||++.|.+.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999998753
No 377
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.82 E-value=0.00054 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=21.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy9640 55 FVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
..|+++|++|||||||++.|.|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999999874
No 378
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.81 E-value=0.0014 Score=56.95 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=29.9
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccch
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSF 91 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~ 91 (199)
++.+++++|++||||||++..|+..+.. ..+.++..|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 5799999999999999999999987743 23444555543
No 379
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.81 E-value=0.00088 Score=51.46 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=22.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
...++++|++|+|||||++.|.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998864
No 380
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.81 E-value=0.00071 Score=53.23 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.3
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~ 75 (199)
.+.+|+.++++|++||||||++..++
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 45678999999999999999887664
No 381
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.80 E-value=0.00078 Score=50.42 Aligned_cols=26 Identities=35% Similarity=0.294 Sum_probs=22.5
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
-..|+++|++|+|||||++.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 35789999999999999998887654
No 382
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.80 E-value=0.00084 Score=60.15 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=25.7
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
-.+|.+|.|.|.|||||||+++.|...+.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 35678999999999999999999988765
No 383
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.79 E-value=0.00092 Score=50.73 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=22.6
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 49 PSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.-++...|+|+|++|+|||||++.+.+..
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 344566789999999999999999998753
No 384
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.79 E-value=0.00057 Score=50.76 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
++...++++|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999999988863
No 385
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.79 E-value=0.00082 Score=50.88 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.9
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
...|+++|++|+|||||++.+.+..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4579999999999999999998753
No 386
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.79 E-value=0.00084 Score=49.91 Aligned_cols=26 Identities=12% Similarity=0.437 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+-..|+++|++|+|||||++.+.+..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 44678999999999999999998653
No 387
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.79 E-value=0.00081 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.8
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.-.++++|++|+|||||++.+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998753
No 388
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.78 E-value=0.00083 Score=49.70 Aligned_cols=26 Identities=19% Similarity=0.483 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+...++++|++|+|||||++.+.+.-
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34679999999999999999998743
No 389
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.78 E-value=0.00085 Score=50.35 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.-..|+++|++|+|||||++.+.+.-
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 334689999999999999999998754
No 390
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.78 E-value=0.00061 Score=56.46 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=30.1
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.|+..+.=.+++|+++.|.|++|||||||+..++...
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 34455223368899999999999999999999998754
No 391
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.78 E-value=0.00084 Score=50.66 Aligned_cols=26 Identities=12% Similarity=0.423 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.-.|+++|++|+|||||++.+.+..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998754
No 392
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.77 E-value=0.00096 Score=50.83 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
-.|.=+.|.|+||+||||++..|+.
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3688899999999999999987765
No 393
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.77 E-value=0.00065 Score=56.40 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=27.8
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
..++. ..+.+ .|.-++|.|+||+||||++..|+.
T Consensus 133 ~~~H~-~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHG-VLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEES-EEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeE-EEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 34555 55555 789999999999999999988877
No 394
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.77 E-value=0.00065 Score=55.93 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+.-+|+|+|.+|+|||||++.|.+.-
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344689999999999999999998743
No 395
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.77 E-value=0.00066 Score=55.85 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy9640 56 VIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
+++|+|.+|+|||||++.|.+.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
No 396
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.77 E-value=0.001 Score=51.43 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.1
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+...++|+|.+|+|||||++.++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 397
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.77 E-value=0.00089 Score=50.27 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.-..|+++|++|+|||||++.|.+..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34579999999999999999998744
No 398
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.77 E-value=0.00097 Score=51.18 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
..+.|.||+|+||||+++.++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3899999999999999999988764
No 399
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.76 E-value=0.00093 Score=50.68 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+...|+|+|++|+|||||++.|.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34579999999999999999998754
No 400
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.76 E-value=0.0009 Score=49.63 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 54 PFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.-.++++|++|+|||||++.+.+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999999864
No 401
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.76 E-value=0.00092 Score=50.17 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+-..|+++|++|+|||||++.+.+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999998643
No 402
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.75 E-value=0.00082 Score=53.45 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.-.|+|+|++|||||||++.|++.-
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998743
No 403
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.75 E-value=0.0009 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy9640 55 FVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
..|+++|++|+|||||++.+.+.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999854
No 404
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.74 E-value=0.00079 Score=51.52 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=25.4
Q ss_pred ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 47 IAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.+.-.....|+++|++|+|||||++.+.+.-
T Consensus 18 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 18 LYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp -CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 44444556789999999999999999998743
No 405
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.74 E-value=0.00093 Score=50.80 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..+...|+++|.+|+|||||++.+.+..
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3456789999999999999999998754
No 406
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.74 E-value=0.0007 Score=55.96 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=31.2
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
+.|++ +.-.+.+|+++.|.|++|+|||||+..++..
T Consensus 56 ~~LD~-~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDR-MTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHH-HHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHh-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 56777 6667999999999999999999999888754
No 407
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.74 E-value=0.00092 Score=50.31 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
-..|+|+|++|+|||||++.+.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3579999999999999999998765
No 408
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.74 E-value=0.00077 Score=50.34 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
++.-.++++|++|+|||||++.+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 566789999999999999999997644
No 409
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.73 E-value=0.0012 Score=49.90 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.+.-.|+++|++|+|||||++.+.+.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999999875
No 410
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.00097 Score=49.96 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
++.-.|+++|++|+|||||++.+.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999853
No 411
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.71 E-value=0.001 Score=50.50 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..|+|+|.+|+|||||++.+.+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCc
Confidence 579999999999999999998743
No 412
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.71 E-value=0.00092 Score=50.27 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=23.8
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.++.-.|+++|++|+|||||++.+.+..
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3456789999999999999999998743
No 413
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.71 E-value=0.00078 Score=56.89 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=23.5
Q ss_pred ccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640 47 IAPSMVEPFVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
..+.+.+ -+.+|+|+|||||||++..|.=
T Consensus 19 ~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 19 SRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 4455544 5899999999999999999863
No 414
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.71 E-value=0.001 Score=50.02 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+...++++|++|+|||||++.+.+.-
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 445689999999999999999998743
No 415
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.71 E-value=0.00074 Score=55.55 Aligned_cols=26 Identities=23% Similarity=0.083 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+..+.|.||+|+|||||++.+++.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45679999999999999999999876
No 416
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.70 E-value=0.00099 Score=51.11 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..-..|+++|++|+|||||++.+.+..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCC
Confidence 344689999999999999999998754
No 417
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.70 E-value=0.0009 Score=56.73 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHc
Q psy9640 56 VIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.++|+|++|+|||||++.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 418
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.69 E-value=0.0012 Score=51.23 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=23.7
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
|.+|+|-|.-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998874
No 419
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.68 E-value=0.00081 Score=53.95 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q psy9640 56 VIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.|+++|.+|||||||++.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999875
No 420
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.68 E-value=0.0012 Score=50.22 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.....|+++|++|+|||||++.+.+.-
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC
Confidence 445689999999999999999998643
No 421
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.68 E-value=0.0011 Score=59.92 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=24.6
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+|.+|.|+|.+||||||+++.|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999877
No 422
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.66 E-value=0.0012 Score=49.45 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+...|+++|++|+|||||++.|.+..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34589999999999999999998753
No 423
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.66 E-value=0.0015 Score=51.80 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
...+||.|+.||||||+++.|+..++..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~ 35 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIP 35 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCC
Confidence 4578999999999999999999888654
No 424
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.66 E-value=0.0011 Score=50.39 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.8
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
-..|+++|++|+|||||++.|.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998743
No 425
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.66 E-value=0.0012 Score=49.77 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.-.++++|++|+|||||++.+.+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 426
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.64 E-value=0.00065 Score=54.80 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHH
Q psy9640 55 FVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
..|+++|.+|+|||||++.|.+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998754
No 427
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.64 E-value=0.001 Score=50.48 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..|+++|++|+|||||++.+.+.-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998643
No 428
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.63 E-value=0.00093 Score=49.86 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=21.8
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
-.+.-.|+++|++|+|||||++.+.+.
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999999864
No 429
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.63 E-value=0.0013 Score=49.43 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.-.|+++|++|+|||||++.+.+..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 44689999999999999999998743
No 430
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.63 E-value=0.0012 Score=50.52 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
...++++|++|+|||||++.+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998754
No 431
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.62 E-value=0.0017 Score=54.31 Aligned_cols=30 Identities=33% Similarity=0.450 Sum_probs=25.7
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
++.-+.|.||+|+||||+++.|+..++.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~ 79 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPF 79 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 456789999999999999999999886553
No 432
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.61 E-value=0.0011 Score=51.66 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
+...|+++|++|+|||||++.+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998764
No 433
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.61 E-value=0.00076 Score=56.60 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.....++++|++|+|||||++.|++..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998754
No 434
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.60 E-value=0.0013 Score=50.59 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.7
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
....|+++|++|+|||||++.+.+..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998753
No 435
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.60 E-value=0.0013 Score=55.73 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 54 PFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
+..++|+|.+|+|||||++.|.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999983
No 436
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.60 E-value=0.001 Score=54.79 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=29.4
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
+.|+..+.=.+++|+++.|.|++|||||||+..++..
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4455522336889999999999999999999988864
No 437
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.58 E-value=0.0019 Score=50.87 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=25.7
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
+..+|+|.|++||||||+.+.|+..++.+
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~ 41 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIH 41 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCE
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCc
Confidence 45799999999999999999999887654
No 438
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.56 E-value=0.0023 Score=51.22 Aligned_cols=33 Identities=33% Similarity=0.444 Sum_probs=27.4
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~ 83 (199)
.....-+.|.||+|+||||+++.++...+.+.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~ 93 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI 93 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 456678999999999999999999988765533
No 439
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.56 E-value=0.0012 Score=51.71 Aligned_cols=34 Identities=32% Similarity=0.580 Sum_probs=27.1
Q ss_pred ccccccccC-CCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640 41 PAFSTFIAP-SMVEPFVIGICGGSASGKTTVATKII 75 (199)
Q Consensus 41 ~~l~~~vsl-~i~~g~iv~IvG~SGsGKSTLl~~L~ 75 (199)
+.|++ +-- -+++|+++.|.|++|+|||||+-.++
T Consensus 17 ~~LD~-~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 17 PGFDE-LIEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTTGG-GTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHH-hhcCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 45555 221 58999999999999999999987765
No 440
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.55 E-value=0.0011 Score=54.11 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
-.|+|+|.+|||||||++.|+|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 479999999999999999998754
No 441
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.55 E-value=0.0011 Score=50.50 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.-..|+++|++|+|||||++.+.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999998653
No 442
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.55 E-value=0.0013 Score=57.01 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=23.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
++.+++++|++|+||||++..|++.+.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999998763
No 443
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.54 E-value=0.0011 Score=50.48 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.....|+++|++|+|||||++.+.+.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34468999999999999999999753
No 444
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.54 E-value=0.00068 Score=52.23 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..-.|+++|.+|+|||||++.|.+.-
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998753
No 445
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.54 E-value=0.0012 Score=52.92 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy9640 55 FVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
..++++|.+|||||||++.|.+.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46999999999999999999874
No 446
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.54 E-value=0.0015 Score=49.67 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..|+++|++|+|||||++.+.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 579999999999999999998743
No 447
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.53 E-value=0.0019 Score=48.82 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=22.6
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
-++...|+++|++|+|||||++.+.+
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 35678899999999999999998854
No 448
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.53 E-value=0.0014 Score=52.92 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=21.9
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
...|+++|.+|||||||++.|.|..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998753
No 449
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.52 E-value=0.0019 Score=54.16 Aligned_cols=29 Identities=24% Similarity=0.278 Sum_probs=25.3
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
...+..+++|+|+.|+|||||++.|+..+
T Consensus 75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 75 DSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp GCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999998776
No 450
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.52 E-value=0.0016 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..++++|++|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999998753
No 451
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.51 E-value=0.00083 Score=50.46 Aligned_cols=27 Identities=30% Similarity=0.233 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+.-.|+++|++|+|||||++.+.+..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999997654
No 452
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.51 E-value=0.0014 Score=49.58 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=21.2
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
..+.-.|+++|++|+|||||++.+.+.
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999999753
No 453
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.50 E-value=0.0018 Score=52.56 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.5
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..+.-+.|.||+|+||||+++.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 445679999999999999999998776
No 454
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.50 E-value=0.0018 Score=49.40 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=21.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.+.-.|+++|++|+|||||++.+.+.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 45678999999999999999999863
No 455
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.47 E-value=0.0017 Score=49.29 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHc
Q psy9640 56 VIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 56 iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+.|.||+|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998765
No 456
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.47 E-value=0.00094 Score=49.63 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=10.5
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 54 PFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
...|+++|++|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999998754
No 457
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.47 E-value=0.0014 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.-..|+|+|++|+|||||++.|.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3457999999999999999998764
No 458
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.44 E-value=0.0026 Score=51.37 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=24.6
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.+.-+.|.||+|+||||+++.++..++.+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~ 77 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAP 77 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34567899999999999999999988654
No 459
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.44 E-value=0.0018 Score=48.64 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=21.9
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
-.....|+++|.+|+|||||++.+.+.
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345568999999999999999998753
No 460
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.43 E-value=0.0016 Score=56.84 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=28.3
Q ss_pred cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+++. + ..+-+|+.++|.|+||+|||||++.|+...
T Consensus 141 ~ID~-L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDL-L-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHH-H-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHH-H-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 4444 3 455689999999999999999999998754
No 461
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.43 E-value=0.0019 Score=46.96 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..+.-+.|.||+|+|||++++.|....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 455568999999999999999997754
No 462
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.43 E-value=0.0018 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.3
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 54 PFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
.-.|+++|++|+|||||++.|.+.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999998753
No 463
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.42 E-value=0.0023 Score=50.03 Aligned_cols=26 Identities=42% Similarity=0.636 Sum_probs=21.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.-|||+|..||||||+++.|.. ++.+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~ 35 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGAS 35 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCc
Confidence 3589999999999999999876 5543
No 464
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.42 E-value=0.00095 Score=55.05 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=25.2
Q ss_pred ccCCCCCC--eEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 47 IAPSMVEP--FVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 47 vsl~i~~g--~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
+.-.+..| ..+.|.||+|+||||+++.+++.+.
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33334444 3499999999999999999998764
No 465
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.42 E-value=0.0016 Score=50.12 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
+.-.|+++|++|+|||||++.+.+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999753
No 466
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.42 E-value=0.002 Score=49.06 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.....|+++|++|+|||||++.+.+..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCC
Confidence 334679999999999999999997643
No 467
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.41 E-value=0.0022 Score=48.82 Aligned_cols=24 Identities=33% Similarity=0.259 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
+|.++.+.|+.||||||++-.++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999855543
No 468
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.41 E-value=0.0016 Score=56.24 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=22.8
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+..+.|.||+|+|||||++.|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999999876
No 469
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.41 E-value=0.0019 Score=53.63 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=24.7
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
-..+..+.|.||+|+||||+++.++..+
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3567789999999999999999998876
No 470
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.40 E-value=0.0014 Score=52.89 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.0
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.-.|+++|.+|+|||||++.|+|.-
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999998753
No 471
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.40 E-value=0.0041 Score=51.38 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=24.8
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..++.-+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4556788999999999999999999887
No 472
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.39 E-value=0.0016 Score=52.30 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.0
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
...++++|.+|+|||||++.|.+.-
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998743
No 473
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.37 E-value=0.003 Score=52.01 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=26.1
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 51 MVEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
..++.-+.|.||+|+|||++++.++...+.+
T Consensus 48 ~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 78 (322)
T 3eie_A 48 RKPTSGILLYGPPGTGKSYLAKAVATEANST 78 (322)
T ss_dssp CCCCCEEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHHCCC
Confidence 3455679999999999999999999887644
No 474
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.36 E-value=0.0025 Score=56.35 Aligned_cols=28 Identities=39% Similarity=0.491 Sum_probs=24.5
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
..+.+|.++|.+||||||+++.|+..++
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999987663
No 475
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.36 E-value=0.0019 Score=51.63 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=22.7
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.-.|+++|.+|+|||||++.|.+.-
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998743
No 476
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.36 E-value=0.0022 Score=57.08 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
+.+.++.++|.+||||||+++.|...+.
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999987653
No 477
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.35 E-value=0.0018 Score=49.08 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+...++++|.+|+|||||++.+.+.+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcC
Confidence 44689999999999999999887754
No 478
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.35 E-value=0.003 Score=48.16 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.-.++++|++|+|||||++.+.+..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 44679999999999999999998643
No 479
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.34 E-value=0.0017 Score=48.58 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIE 76 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~ 76 (199)
++.-.++++|++|+|||||++.+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 4677899999999999999988853
No 480
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0024 Score=49.37 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.8
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
-..|+|+|++|+|||||++.+.+.-
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998743
No 481
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.34 E-value=0.0032 Score=51.79 Aligned_cols=28 Identities=29% Similarity=0.197 Sum_probs=24.3
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 54 PFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
...+.|.||+|+||||+++.++..++.+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 3468999999999999999999887655
No 482
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.34 E-value=0.0033 Score=52.66 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=25.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
..+.-+.|.||+|+||||+++.|+..++.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 456789999999999999999999887543
No 483
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.33 E-value=0.0024 Score=49.23 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=22.2
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
.+...|+++|.+|+|||||++.+.+.-
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCC
Confidence 445689999999999999999998753
No 484
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.33 E-value=0.0018 Score=54.21 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=31.3
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.|+. +.-.+.+|+++.|.|++|+|||||+..++...
T Consensus 34 ~~LD~-~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 34 VQLDN-YTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HHHHH-HHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hHHHH-HhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45667 55589999999999999999999998887644
No 485
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.33 E-value=0.0026 Score=55.37 Aligned_cols=28 Identities=36% Similarity=0.434 Sum_probs=23.9
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLN 79 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~ 79 (199)
..+.+|.++|.+||||||+++.|+..+.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999987653
No 486
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.29 E-value=0.0036 Score=52.58 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=24.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.+..+.|.||+|+||||+++.|+..++.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34568899999999999999999988654
No 487
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.28 E-value=0.002 Score=50.09 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 54 PFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
...|+|+|.+|+|||||++.+.+.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999999753
No 488
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.26 E-value=0.001 Score=50.39 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=6.2
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 53 EPFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 53 ~g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
..-.|+++|++|+|||||++.+.+.
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEC-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4468999999999999999998875
No 489
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.25 E-value=0.0021 Score=49.06 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=18.7
Q ss_pred EEEecCCCCcHHHHHHHHHHH
Q psy9640 57 IGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 57 v~IvG~SGsGKSTLl~~L~~~ 77 (199)
+.|+|++||||||++..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999988744
No 490
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.24 E-value=0.0029 Score=52.56 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=26.6
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640 50 SMVEPFVIGICGGSASGKTTVATKIIESLNV 80 (199)
Q Consensus 50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~ 80 (199)
...+|..+.|.||+|+||||+++.++..+..
T Consensus 66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3445678999999999999999999998864
No 491
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.23 E-value=0.0036 Score=55.22 Aligned_cols=39 Identities=28% Similarity=0.197 Sum_probs=28.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcC--CCeeeeecccc
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDS 90 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~--~~~~~~i~~d~ 90 (199)
.++.+|+|+|++||||||++..|+..+. ...+.++..|.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 5678999999999999999999997653 23444454443
No 492
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.21 E-value=0.0041 Score=54.00 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640 55 FVIGICGGSASGKTTVATKIIESLNVPW 82 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~ 82 (199)
.-+.+.||+|+||||+++.|++.++.+.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 3488999999999999999999987654
No 493
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.20 E-value=0.0024 Score=53.89 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=29.3
Q ss_pred cccccccc-CCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 41 PAFSTFIA-PSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 41 ~~l~~~vs-l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.|+..+. =-+++|.++.|.|++|||||||+..++...
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555112 248899999999999999999998887644
No 494
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.20 E-value=0.0042 Score=53.74 Aligned_cols=43 Identities=28% Similarity=0.252 Sum_probs=31.7
Q ss_pred cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC---CCeeeeecccc
Q psy9640 48 APSMVEPFVIGICGGSASGKTTVATKIIESLN---VPWVTLLSMDS 90 (199)
Q Consensus 48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~---~~~~~~i~~d~ 90 (199)
++.-.++.+++++|++|+||||++..|+..+. ...+.++..|.
T Consensus 94 ~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 94 NLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp CCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 33334678999999999999999999997763 33455555554
No 495
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=96.16 E-value=0.00057 Score=51.88 Aligned_cols=43 Identities=7% Similarity=-0.007 Sum_probs=31.6
Q ss_pred ecceecCCeeeeeeEEeccch-------------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640 136 EGKRCAVSKICGVSILRAGET-------------------------MEQAVHDVCKDIRIGKILIQTNKA 180 (199)
Q Consensus 136 ~g~~lSgGq~QrvaiaRA~~~-------------------------~~~~l~~~~p~~~~~~~~~~~~~~ 180 (199)
....|||||+||++|||++.. +.+.+.+...+ .++|.++|+..
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~--~~~ivith~~~ 128 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE--SQFIVITLRDV 128 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT--SEEEEECSCHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC--CEEEEEEecHH
Confidence 456899999999999999951 44555555555 34688888754
No 496
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.15 E-value=0.0035 Score=54.15 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=30.5
Q ss_pred ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
+.|+. +.-.+.+|+++.|.|++|+|||||+..++...
T Consensus 188 ~~LD~-~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 188 KELDQ-LIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHH-HHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred Hhhhh-hcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34566 44568999999999999999999998887644
No 497
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.13 E-value=0.00093 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=20.7
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640 54 PFVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 54 g~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
...|+|+|++|+|||||++.|.+.
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999988753
No 498
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.13 E-value=0.0041 Score=52.12 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=25.2
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640 52 VEPFVIGICGGSASGKTTVATKIIESLNVP 81 (199)
Q Consensus 52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~ 81 (199)
.++.-+.|.||+|+|||||++.++..++.+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEANST 111 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 444568899999999999999999987644
No 499
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.13 E-value=0.0016 Score=56.47 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHH
Q psy9640 55 FVIGICGGSASGKTTVATKIIES 77 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~ 77 (199)
..|+|+|.+|+|||||++.|.+.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999763
No 500
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.12 E-value=0.0027 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640 55 FVIGICGGSASGKTTVATKIIESL 78 (199)
Q Consensus 55 ~iv~IvG~SGsGKSTLl~~L~~~l 78 (199)
..++++|.+|+|||||++.|.+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 689999999999999999998754
Done!