RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9640
(199 letters)
>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
also known as uridine kinase or uridine-cytidine kinase
(UCK), catalyzes the reversible phosphoryl transfer from
ATP to uridine or cytidine to yield UMP or CMP. In the
primidine nucleotide-salvage pathway, this enzyme
combined with nucleoside diphosphate kinases further
phosphorylates UMP and CMP to form UTP and CTP. This
kinase also catalyzes the phosphorylation of several
cytotoxic ribonucleoside analogs such as 5-flurrouridine
and cyclopentenyl-cytidine.
Length = 198
Score = 115 bits (290), Expect = 2e-32
Identities = 51/120 (42%), Positives = 63/120 (52%), Gaps = 42/120 (35%)
Query: 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
+K+FVDTDADVRL RR++RDI+ RGRDLE VI QY+ VKP FI P+
Sbjct: 121 LKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTK--------- 171
Query: 61 GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
+AD+I+PRGG+N VAIDLIVQHI S+
Sbjct: 172 ---------------------------------RYADVIIPRGGDNHVAIDLIVQHIKSK 198
Score = 83.8 bits (208), Expect = 3e-20
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 8/87 (9%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--HADIIVPRGGE----NCVA 109
+IGI GGS SGKTTVA +IIE L P V ++S DS+Y+ H ++ + +
Sbjct: 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFD 60
Query: 110 IDLIVQHIHSQLQAGVSVDMPQGYTYE 136
DL++ H+ L+ G SV++P Y ++
Sbjct: 61 FDLLISHLQD-LKNGKSVEIPV-YDFK 85
>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 103 bits (260), Expect = 7e-28
Identities = 43/122 (35%), Positives = 57/122 (46%), Gaps = 42/122 (34%)
Query: 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
+K+FVDT D+RL RRLKRD+ RGR LE VI QY++ V+P FI PS
Sbjct: 128 IKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPS---------- 177
Query: 61 GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
+ +ADII+P GG+N VAID++ I
Sbjct: 178 --------------------------------KRYADIIIPEGGKNRVAIDILKAKIRQL 205
Query: 121 LQ 122
L+
Sbjct: 206 LE 207
Score = 67.1 bits (165), Expect = 6e-14
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 16/96 (16%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAI 110
M +P +IGI GGS SGKTTVA+ I E L + ++ DS+Y+ + + E V
Sbjct: 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSF----EERVKT 58
Query: 111 ----------DLIVQHIHSQLQAGVSVDMPQGYTYE 136
DL+++H+ L+AG ++++P Y Y
Sbjct: 59 NYDHPDAFDHDLLIEHLK-ALKAGKAIEIPV-YDYT 92
>gnl|CDD|232890 TIGR00235, udk, uridine kinase. Model contains a number of longer
eukaryotic proteins and starts bringing in
phosphoribulokinase hits at scores of 160 and below
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 207
Score = 87.8 bits (218), Expect = 9e-22
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 42/122 (34%)
Query: 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
+K+FVDT D+RL RR++RDI RGR L+ VI QY V+P + F+ P+
Sbjct: 128 LKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTK--------- 178
Query: 61 GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
+AD+I+P GG N VAI+++ I
Sbjct: 179 ---------------------------------QYADLIIPEGGRNEVAINVLDTKIKHL 205
Query: 121 LQ 122
L+
Sbjct: 206 LE 207
Score = 57.0 bits (138), Expect = 3e-10
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE------NCVA 109
+IGI GGS SGKTTVA KI E L + ++S D++Y+ + + + + +
Sbjct: 8 IIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFD 67
Query: 110 IDLIVQHIHSQLQAGVSVDMP 130
DL+ +H+ + L+ G +D+P
Sbjct: 68 NDLLYEHLKN-LKNGSPIDVP 87
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism].
Length = 218
Score = 86.2 bits (214), Expect = 4e-21
Identities = 47/127 (37%), Positives = 62/127 (48%), Gaps = 42/127 (33%)
Query: 2 KVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICG 61
K+FVDTDADVRL RR+KRD+ RGRDLE VI+QYV V+P + FI P+
Sbjct: 131 KIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPT----------- 179
Query: 62 GSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQL 121
+ +ADII+P GG+N VA+DL+ I S L
Sbjct: 180 -------------------------------KKYADIIIPSGGKNEVAVDLLQAKIASSL 208
Query: 122 QAGVSVD 128
+ +
Sbjct: 209 SEQNNTN 215
Score = 62.3 bits (152), Expect = 4e-12
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 50 SMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADI-IVPRGGEN-- 106
+ +IGI GGS SGKTTVA ++ E L V V ++S+D +Y+ + + R N
Sbjct: 4 KPEKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYD 63
Query: 107 ---CVAIDLIVQHIHSQLQAGVSVDMPQGYTY-EGKR 139
+DL+++H+ L+ G VD+P Y Y R
Sbjct: 64 HPEAFDLDLLIEHLKD-LKQGKPVDLPV-YDYKTHTR 98
>gnl|CDD|223113 COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 210
Score = 75.7 bits (187), Expect = 3e-17
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
V ++ P G EG + A KI V ILRAG M + + + R+G I I ++ T EP
Sbjct: 53 VEIETPLG-PTEGVQIAGKKIVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLEP 111
Query: 185 ELYYLRLPKDIKD 197
LYY +LP+DI +
Sbjct: 112 VLYYEKLPEDIDE 124
>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family. In
Arabidopsis the region carries two binding domains, a
phosphoribosylpyrophosphate-binding domain and, at the
very C-terminus, a uracil-binding domain.
Length = 197
Score = 63.5 bits (155), Expect = 9e-13
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSM 51
+K+ VD D ++ ++++RD+ RG LE V KP + +I P
Sbjct: 132 LKIGVDPDINLEWIQKIQRDMAERGHSLEAVTDSI-LRRKPDYVNYICPQF 181
Score = 43.9 bits (104), Expect = 1e-05
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVT--------LLSMDSFY 92
+IG+ G S +GKTTVA + V D FY
Sbjct: 1 IIGVTGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFY 45
>gnl|CDD|140322 PTZ00301, PTZ00301, uridine kinase; Provisional.
Length = 210
Score = 50.0 bits (119), Expect = 9e-08
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 3 VFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
+FVDT D+ L RR KRD+ RGR E VI+QY V+P + ++ PS V +I
Sbjct: 131 IFVDTPLDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPS 188
>gnl|CDD|130163 TIGR01091, upp, uracil phosphoribosyltransferase. A fairly deep
split in phylogenetic and UPGMA trees separates this
mostly prokaryotic set of uracil
phosphoribosyltransferases from a mostly eukaryotic set
that includes uracil phosphoribosyltransferase, uridine
kinases, and other, uncharacterized proteins [Purines,
pyrimidines, nucleosides, and nucleotides, Salvage of
nucleosides and nucleotides].
Length = 207
Score = 49.6 bits (119), Expect = 1e-07
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
V V+ P G T EG R KI V ILRAG M V + + ++G + N+ T +P
Sbjct: 51 VEVETPLGET-EGGRILGKKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKP 109
Query: 185 ELYYLRLPKDIKD 197
YY +LP+DI +
Sbjct: 110 VPYYSKLPEDIDE 122
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 45.4 bits (107), Expect = 1e-06
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAID 111
+I I G SGK+T+A K+ E L +P ++S+D R + G + + ID
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLGIP---VISLDDLLREEGLAELDDGELDDIDID 53
>gnl|CDD|226691 COG4240, COG4240, Predicted kinase [General function prediction
only].
Length = 300
Score = 44.9 bits (106), Expect = 8e-06
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 21 ILARGRDLEGVIKQYVNMVKPAFSTF-------------IAPSMVE---PFVIGICGGSA 64
+ D + ++++ + + IAP E P ++GI G
Sbjct: 1 MAPPPADTAAALARFIDQERLPPAFAALAQDLHLPLLAKIAPWAQERGRPLIVGISGPQG 60
Query: 65 SGKTTVATKI---IESLNVPWVTLLSMDSFYRVHAD 97
SGK+T++ I + + + LS+D Y HAD
Sbjct: 61 SGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHAD 96
>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like)
is a family of proteins highly similar to the uridine
monophosphate kinase (UMPK, EC 2.7.1.48), also known as
uridine kinase or uridine-cytidine kinase (UCK).
Length = 179
Score = 43.1 bits (102), Expect = 2e-05
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 56 VIGICGGSASGKTTVATKI--IESLNVPWVTLLSMDSFYRVHADIIVPRG------GENC 107
V+GI G S SGKTT A K+ +N ++S+D +Y PR E+
Sbjct: 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV---PRKTPRDEDGNYDFESI 57
Query: 108 VAIDLIVQHIHSQLQAGVSVDMPQ 131
+ +DL+ +++H L G V++P
Sbjct: 58 LDLDLLNKNLH-DLLNGKEVELPI 80
Score = 27.3 bits (61), Expect = 3.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 10 DVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAP 49
RL RR+ RDI RG E I + ++ P+ FI P
Sbjct: 130 LNRLLRRVVRDIQFRGYSAELTILMWPSV--PSGEEFIIP 167
>gnl|CDD|234653 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.
Length = 209
Score = 39.7 bits (94), Expect = 3e-04
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
V ++ P G GKR A K+ V ILRAG M V + R+G I + ++ T EP
Sbjct: 53 VEIETPLG-KTTGKRIAGKKLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEP 111
Query: 185 ELYYLRLPKDIKD 197
YY++LP+DI +
Sbjct: 112 VEYYVKLPEDIDE 124
>gnl|CDD|237728 PRK14490, PRK14490, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MobA;
Provisional.
Length = 369
Score = 38.9 bits (91), Expect = 0.001
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 50 SMVEPFVIGICGGSASGKTTVATKIIESL 78
+ PF I CG S SGKTT+ T ++ L
Sbjct: 1 MLFHPFEIAFCGYSGSGKTTLITALVRRL 29
>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism].
Length = 283
Score = 37.6 bits (88), Expect = 0.002
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSF 91
PF+IGI G A GK+T A + L+ P V L++MD F
Sbjct: 82 PFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGF 123
>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
the Benson-Calvin cycle in chloroplasts or
photosynthetic prokaryotes. This enzyme catalyzes the
phosphorylation of D-ribulose 5-phosphate to form
D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis.
Length = 273
Score = 37.3 bits (87), Expect = 0.002
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 2 KVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAP 49
V++D +V+ A +++RD+ RG LE V+ + KP F +I P
Sbjct: 119 SVYLDISDEVKFAWKIQRDMAERGHSLEDVLAS-IEARKPDFEAYIDP 165
Score = 30.0 bits (68), Expect = 0.79
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV----HADIIV----PRGGENC 107
+IG+ G S GK+T ++ VT++ +D ++ + + + PR
Sbjct: 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPR----A 56
Query: 108 VAIDLIVQHIHSQLQAGVSVDMP 130
DL+ + + L+ G +++ P
Sbjct: 57 NNFDLMYEQL-KALKEGQAIEKP 78
>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 36.9 bits (86), Expect = 0.003
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 93
+IG+ GG SGK+TVA KI+ L P ++ D R
Sbjct: 1 MMLIIGLTGGIGSGKSTVA-KILAELGFP---VIDADDVAR 37
>gnl|CDD|226463 COG3954, PrkB, Phosphoribulokinase [Energy production and
conversion].
Length = 289
Score = 36.4 bits (84), Expect = 0.006
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 43/138 (31%)
Query: 15 RRLKRDILARGRDLEGV-------IKQYVNMVKPAFS----------------TFIA--- 48
++L RD RG E V + Y+N + P FS F A
Sbjct: 163 QKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHINFQRVPTVDTSNPFAAKGI 222
Query: 49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSM--DSFYRVHADIIVPRGGEN 106
PS+ E FV+ + + +E ++ P+ LL+M SF ++VP GG+
Sbjct: 223 PSLDESFVV------------IHFRNLEGIDFPY--LLAMLQGSFISHINTLVVP-GGKM 267
Query: 107 CVAIDLIVQHIHSQLQAG 124
+A++LI+ + +L G
Sbjct: 268 GLAMELIMLPLVQRLMEG 285
>gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme
involved in the metabolism of nicotinamide adenine
dinucleotide (NAD+). This enzyme catalyzes the
phosphorylation of nicotinamide riboside (NR) to form
nicotinamide mononucleotide (NMN). It defines the NR
salvage pathway of NAD+ biosynthesis in addition to the
pathways through nicotinic acid mononucleotide (NaMN).
This enzyme can also phosphorylate the anticancer drug
tiazofurin, which is an analog of nicotinamide
riboside.
Length = 187
Score = 35.8 bits (83), Expect = 0.006
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADI 98
++GI G + SGKTT+A + L P ++ D F++ +I
Sbjct: 1 IVGISGVTNSGKTTLAKLLQRIL--PNCCVIHQDDFFKPEDEI 41
>gnl|CDD|215198 PLN02348, PLN02348, phosphoribulokinase.
Length = 395
Score = 36.4 bits (84), Expect = 0.007
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 2 KVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAP 49
+++D DV+ A +++RD+ RG LE IK + KP F +I P
Sbjct: 186 SIYLDISDDVKFAWKIQRDMAERGHSLES-IKASIEARKPDFDAYIDP 232
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 36.1 bits (84), Expect = 0.008
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV----HADIIV----PRGGE 105
P ++G+ G S GKTT + + L VT++ D ++ ++ + PR
Sbjct: 8 PVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPR--- 64
Query: 106 NCVAIDLIVQHIHSQLQAGVSVDMP 130
+D++ +H+ L+ G + P
Sbjct: 65 -ANNLDIMYEHL-KALKTGQPILKP 87
Score = 34.6 bits (80), Expect = 0.024
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 2 KVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAP 49
KV++D +V++A ++KRD+ RG E V+ + + +P F +I P
Sbjct: 128 KVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAE-IEAREPDFEAYIRP 174
>gnl|CDD|234620 PRK00081, coaE, dephospho-CoA kinase; Reviewed.
Length = 194
Score = 35.5 bits (83), Expect = 0.008
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 19/67 (28%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPR----GGENCVA 109
+IG+ GG SGK+TVA + L P + AD I GG A
Sbjct: 2 MLIIGLTGGIGSGKSTVA-NLFAELGAP-----------VIDADAIAHEVVEPGGP---A 46
Query: 110 IDLIVQH 116
+ IV+
Sbjct: 47 LQAIVEA 53
>gnl|CDD|233448 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide
adenylyltransferase, NadR type. The NadR protein of E.
coli and closely related bacteria is both enzyme and
regulatory protein. The first 60 or so amino acids,
N-terminal to the region covered by this model, is a
DNA-binding helix-turn-helix domain (pfam01381)
responsible for repressing the nadAB genes of NAD de
novo biosynthesis. The NadR homologs in Mycobacterium
tuberculosis, Haemophilus influenzae, and others appear
to lack the repressor domain. NadR has recently been
shown to act as an enzyme of the salvage pathway of NAD
biosynthesis, nicotinamide-nucleotide
adenylyltransferase; members of this family are presumed
to share this activity. E. coli NadR has also been found
to regulate the import of its substrate, nicotinamide
ribonucleotide, but it is not known if the other members
of this model share that activity.
Length = 325
Score = 35.6 bits (82), Expect = 0.009
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 45 TFIAPSMVEPF---VIGICGGSASGKTTVATKIIESLNVPWV 83
I P V PF + I GG ++GK+T+ K+ N
Sbjct: 151 KHI-PREVRPFFVKTVAILGGESTGKSTLVNKLAAVFNTTSA 191
>gnl|CDD|239390 cd03116, MobB, Molybdenum is an essential trace element in the
form of molybdenum cofactor (Moco) which is associated
with the metabolism of nitrogen, carbon and sulfur by
redox active enzymes. In E. coli, the synthesis of Moco
involves genes from several loci: moa, mob, mod, moe
and mog. The mob locus contains mobA and mobB genes.
MobB catalyzes the attachment of the guanine
dinucleotide to molybdopterin.
Length = 159
Score = 34.9 bits (81), Expect = 0.010
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 54 PFVIGICGGSASGKTTVATKIIESL 78
VIG G S SGKTT+ K+I +L
Sbjct: 1 MKVIGFVGYSGSGKTTLLEKLIPAL 25
>gnl|CDD|224677 COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis
protein [Coenzyme metabolism].
Length = 161
Score = 34.6 bits (80), Expect = 0.014
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 56 VIGICGGSASGKTTVATKIIESL 78
++GI G SGKTT+ K++ L
Sbjct: 4 ILGIVGYKNSGKTTLIEKLVRKL 26
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain only
a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 34.2 bits (79), Expect = 0.015
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQ 115
+I + G SGK+T A +++ L V +LS D+ + P A + Q
Sbjct: 1 LILMVGLPGSGKSTFARRLLREL--GAV-VLSSDTLRKRLRGDGPPDISYYARASGRVYQ 57
Query: 116 HIHSQ----LQAGVSV 127
+ L+AG V
Sbjct: 58 RLLELAREALRAGRPV 73
>gnl|CDD|238980 cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis.
Length = 179
Score = 34.4 bits (80), Expect = 0.019
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVP 81
+IG+ GG SGK+TVA K+++ L +P
Sbjct: 1 IIGLTGGIGSGKSTVA-KLLKELGIP 25
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 33.8 bits (78), Expect = 0.034
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 55 FVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYRVHAD-IIVPRG 103
++GI G +GK+T+A + L +P + + MD F+ + ++ G
Sbjct: 34 TIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQ-VPMDGFH--LDNAVLDAHG 84
>gnl|CDD|235466 PRK05439, PRK05439, pantothenate kinase; Provisional.
Length = 311
Score = 34.0 bits (79), Expect = 0.034
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 54 PFVIGICGGSASGKTTVATKIIESL-----NVPWVTLLSMDSF 91
PF+IGI G A GK+T A +++++L P V L++ D F
Sbjct: 86 PFIIGIAGSVAVGKSTTA-RLLQALLSRWPEHPKVELVTTDGF 127
>gnl|CDD|177952 PLN02318, PLN02318, phosphoribulokinase/uridine kinase.
Length = 656
Score = 34.1 bits (78), Expect = 0.040
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADII-----VPRGGENCVAI 110
++G+ G S +GKT K++ + P + ++SMD+ Y + II PR
Sbjct: 67 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVISMDN-YNDSSRIIDGNFDDPR----LTDY 119
Query: 111 DLIVQHIHSQLQAGVSVDMP 130
D ++ +IH L+AG SV +P
Sbjct: 120 DTLLDNIHD-LKAGKSVQVP 138
Score = 29.4 bits (66), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 13 LARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSM 51
L +R+ RDI G++ E +I Q V P + FI P +
Sbjct: 191 LVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDL 229
>gnl|CDD|130536 TIGR01470, cysG_Nterm, siroheme synthase, N-terminal domain. This
model represents a subfamily of CysG N-terminal
region-related sequences. All sequences in the seed
alignment for this model are N-terminal regions of known
or predicted siroheme synthases. The C-terminal region
of each is uroporphyrin-III C-methyltransferase (EC
2.1.1.107), which catalyzes the first step committed to
the biosynthesis of either siroheme or cobalamin
(vitamin B12) rather than protoheme (heme). The region
represented by this model completes the process of
oxidation and iron insertion to yield siroheme. Siroheme
is a cofactor for nitrite and sulfite reductases, so
siroheme synthase is CysG of cysteine biosynthesis in
some organisms [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 205
Score = 33.1 bits (76), Expect = 0.059
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 13/66 (19%)
Query: 3 VFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMV-KPAFSTFIAPSMVE--PFVIGI 59
V TD D L RR+ ARG VN+V P +FI PS+V+ P V+ I
Sbjct: 73 VIAATD-DEELNRRVAHAARARGV--------PVNVVDDPELCSFIFPSIVDRSPVVVAI 123
Query: 60 -CGGSA 64
GG+A
Sbjct: 124 SSGGAA 129
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 33.6 bits (77), Expect = 0.060
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVP 81
IGI G S SGK+T+ TK+++ L P
Sbjct: 485 FIGIVGPSGSGKSTL-TKLLQRLYTP 509
>gnl|CDD|107335 cd06340, PBP1_ABC_ligand_binding_like_6, Type I periplasmic
ligand-binding domain of uncharacterized ABC (ATPase
Binding Cassette)-type active transport systems that are
predicted to be involved in transport of amino acids,
peptides, or inorganic ions. This subgroup includes the
type I periplasmic ligand-binding domain of
uncharacterized ABC (ATPase Binding Cassette)-type
active transport systems that are predicted to be
involved in transport of amino acids, peptides, or
inorganic ions. This subgroup has high sequence
similarity to members of the family of hydrophobic amino
acid transporters (HAAT), such as
leucine-isoleucine-valine-binding protein (LIVBP);
however their ligand specificity has not been determined
experimentally.
Length = 347
Score = 33.0 bits (76), Expect = 0.074
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG 103
V+ + G S T A+++ E VP+V ++ +D I RG
Sbjct: 71 VVALVGAYQSAVTLAASQVAERYGVPFVVDGAV-------SDSITERG 111
>gnl|CDD|200027 TIGR00554, panK_bact, pantothenate kinase, bacterial type. Shown
to be a homodimer in E. coli. This enzyme catalyzes the
rate-limiting step in the biosynthesis of coenzyme A. It
is very well conserved from E. coli to B. subtilis, but
differs considerably from known eukaryotic forms,
described in a separate model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pantothenate
and coenzyme A].
Length = 290
Score = 32.5 bits (74), Expect = 0.098
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPW-----VTLLSMDSF 91
P++I I G A GK+T A +I+++L W V L++ D F
Sbjct: 62 PYIISIAGSVAVGKSTTA-RILQALLSRWPEHRKVELITTDGF 103
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 31.5 bits (72), Expect = 0.13
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 55 FVIGICGGSASGKTTVATKIIESLNVPWV 83
V+G+ G SGK+TV + E L P++
Sbjct: 3 VVMGVSG---SGKSTVGKALAERLGAPFI 28
>gnl|CDD|223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 31.8 bits (73), Expect = 0.14
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG 103
M +I I G + SGK+TVA + E L L + YR A + G
Sbjct: 1 MKAAIIIAIDGPAGSGKSTVAKILAEKLGFH---YLDTGAMYRAVALAALKHG 50
>gnl|CDD|181310 PRK08233, PRK08233, hypothetical protein; Provisional.
Length = 182
Score = 31.6 bits (72), Expect = 0.14
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 3 VFVDTDADVRLARRLKRDILAR-GRDLEGVIKQYVNMVKPAFSTFI 47
+F+DT D+ +ARR+ RD G ++ +K Y+N +P + +
Sbjct: 102 IFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEAL 147
Score = 26.2 bits (58), Expect = 9.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 54 PFVIGICGGSASGKTTVATKIIESL 78
+I I S GKTT+ ++ L
Sbjct: 3 TKIITIAAVSGGGKTTLTERLTHKL 27
>gnl|CDD|184807 PRK14730, coaE, dephospho-CoA kinase; Provisional.
Length = 195
Score = 31.4 bits (72), Expect = 0.18
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 57 IGICGGSASGKTTVATKIIESLNVP 81
IG+ GG ASGK+TV + + +P
Sbjct: 4 IGLTGGIASGKSTVGNYLAQQKGIP 28
>gnl|CDD|235858 PRK06762, PRK06762, hypothetical protein; Provisional.
Length = 166
Score = 31.5 bits (72), Expect = 0.18
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQH 116
I I G S SGKTT+A ++ E L L+S D R D++ + G ++IDLI Q
Sbjct: 5 IIIRGNSGSGKTTIAKQLQERLG-RGTLLVSQDVVRR---DMLRVKDGPGNLSIDLIEQL 60
Query: 117 IHSQLQAGVSV 127
+ L V
Sbjct: 61 VRYGLGHCEFV 71
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 32.2 bits (74), Expect = 0.18
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPW 82
+ + GGS SGK+T+A K++ L PW
Sbjct: 508 VALVGGSGSGKSTIA-KLVAGLYQPW 532
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 217
Score = 31.6 bits (72), Expect = 0.18
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 55 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG 103
+I I G S +GK+TVA + E L L + YR A +
Sbjct: 3 MIIAIDGPSGAGKSTVAKAVAEKLG---YAYLDSGAMYRAIALAALQNR 48
>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces
scores in the range of 0-25 bits against adenylate,
guanylate, uridine, and thymidylate kinases
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 188
Score = 31.6 bits (72), Expect = 0.18
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG-GENCVAIDLIV 114
+IG+ GG SGK+TVA + F + AD I + + A + IV
Sbjct: 1 IIGLTGGIGSGKSTVA-NYLADKY----------HFPVIDADKIAHQVVEKGSPAYEKIV 49
Query: 115 QHIHSQL 121
H +Q+
Sbjct: 50 DHFGAQI 56
>gnl|CDD|169051 PRK07667, PRK07667, uridine kinase; Provisional.
Length = 193
Score = 31.6 bits (72), Expect = 0.19
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 25/107 (23%)
Query: 55 FVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSFYRVHADIIVPR------GGE 105
F++GI G S SGKTT + E++ +P + +D D IV R G E
Sbjct: 18 FILGIDGLSRSGKTTFVANLKENMKQEGIP-FHIFHID-------DYIVERNKRYHTGFE 69
Query: 106 NCVA-------IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKI 145
I+ + Q +LQ + +P Y E C + K+
Sbjct: 70 EWYEYYYLQWDIEWLRQKFFRKLQNETKLTLPF-YHDETDTCEMKKV 115
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 30.9 bits (71), Expect = 0.22
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWV 83
+I I G SGKTTVA + E L + V
Sbjct: 2 IITISGPPGSGKTTVARLLAEKLGLKHV 29
>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 31.5 bits (72), Expect = 0.24
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--YR 93
P +I I G +ASGKT +A + + L ++S+DS YR
Sbjct: 3 PKLIVIAGPTASGKTALAIALAKRLGGE---IISLDSMQVYR 41
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 30.5 bits (70), Expect = 0.28
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWV 83
+I I G + SGK+TVA + + L +P++
Sbjct: 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYL 28
>gnl|CDD|132852 cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like phospholipase.
Patatin is a storage protein of the potato tuber that
shows Phospholipase A2 activity (PLA2; EC 3.1.1.4).
Patatin catalyzes the nonspecific hydrolysis of
phospholipids, glycolipids, sulfolipids, and mono- and
diacylglycerols, thereby showing lipid acyl hydrolase
activity. The active site includes an oxyanion hole
with a conserved GGxR motif; it is found in almost all
the members of this family. The catalytic dyad is
formed by a serine and an aspartate. Patatin belongs to
the alpha-beta hydrolase family which is identified by
a characteristic nucleophile elbow with a consensus
sequence of Sm-X-Nu-Sm (Sm = small residue, X = any
residue and Nu = nucleophile). Members of this family
have been found also in vertebrates. This family
includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9
(iPLA2-beta) like phospholipases from human as well as
the Pat17 isozyme from Solanum cardiophyllum.
Length = 288
Score = 30.7 bits (70), Expect = 0.42
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 21 ILARGRDLEGVIKQYVNMVKPAFSTFIAPSMV 52
LA G V+K Y + FS A
Sbjct: 50 GLALGYSPRQVLKLYEEVGLKVFSKSSAGGGA 81
>gnl|CDD|225713 COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism
[Coenzyme metabolism].
Length = 187
Score = 30.5 bits (69), Expect = 0.44
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 10/43 (23%)
Query: 39 VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81
V+P F +A I GG +SGK+T+ K+ N
Sbjct: 3 VRPFFVKTVA----------ILGGESSGKSTLVNKLANIFNTT 35
>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional.
Length = 176
Score = 30.4 bits (69), Expect = 0.44
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 50 SMVEPFVIGICGGSASGKTTVATKIIESL 78
+VI I G + SGKTT+A + E L
Sbjct: 3 MKPNGYVIWITGLAGSGKTTIAKALYERL 31
>gnl|CDD|226412 COG3896, COG3896, Chloramphenicol 3-O-phosphotransferase [Defense
mechanisms].
Length = 205
Score = 30.3 bits (68), Expect = 0.48
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 48 APSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 91
M E ++ + GGS++GK+++A + PW+ + +D F
Sbjct: 17 MAGMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMH-IGIDLF 59
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 28.5 bits (64), Expect = 0.53
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLS 87
+I I GGS SGK+TVA K+ E L V +L
Sbjct: 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 30.3 bits (69), Expect = 0.63
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPW 82
+ I G S SGK+T+ K++ L P
Sbjct: 501 KVAIVGRSGSGKSTLL-KLLLGLYKPQ 526
>gnl|CDD|219519 pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after
Kidins220/ARMS and PifA) family of predicted NTPases
are sporadically distributed across a wide phylogenetic
range in bacteria and in animals. Many of the
prokaryotic KAP NTPases are encoded in plasmids and
tend to undergo disruption to form pseudogenes. A
unique feature of all eukaryotic and certain bacterial
KAP NTPases is the presence of two or four
transmembrane helices inserted into the P-loop NTPase
domain. These transmembrane helices anchor KAP NTPases
in the membrane such that the P-loop domain is located
on the intracellular side.
Length = 301
Score = 30.1 bits (68), Expect = 0.64
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 31 VIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79
+ ++ PS+ FVIG+ G SGKT+ + + L
Sbjct: 4 YAENLAKLLV-------EPSLAPGFVIGLYGAWGSGKTSFLNLLEDELK 45
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 29.6 bits (66), Expect = 0.66
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVP 81
VI I G SGKTT+A + L P
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPP 29
>gnl|CDD|232804 TIGR00064, ftsY, signal recognition particle-docking protein
FtsY. There is a weak division between FtsY and SRP54;
both are GTPases. In E.coli, ftsY is an essential gene
located in an operon with cell division genes ftsE and
ftsX, but its apparent function is as the signal
recognition particle docking protein [Protein fate,
Protein and peptide secretion and trafficking].
Length = 272
Score = 29.9 bits (68), Expect = 0.68
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 13 LARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVAT 72
L + LK + L+ ++K+Y+ + + +P VI G + GKTT
Sbjct: 31 LKKELKGKKVKDAELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIA 90
Query: 73 KI 74
K+
Sbjct: 91 KL 92
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 29.8 bits (67), Expect = 0.74
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVP 81
V+GI G S SGK+T+ TK+I+ VP
Sbjct: 30 VVGIVGRSGSGKSTL-TKLIQRFYVP 54
>gnl|CDD|216308 pfam01121, CoaE, Dephospho-CoA kinase. This family catalyzes the
phosphorylation of the 3'-hydroxyl group of
dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24.
This enzyme uses ATP in its reaction.
Length = 179
Score = 29.6 bits (67), Expect = 0.78
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 56 VIGICGGSASGKTTVAT 72
++G+ GG SGK+TVA
Sbjct: 2 IVGLTGGIGSGKSTVAN 18
>gnl|CDD|232857 TIGR00176, mobB, molybdopterin-guanine dinucleotide biosynthesis
protein MobB. This molybdenum cofactor biosynthesis
enzyme is similar to the urease accessory protein UreG
and to the hydrogenase accessory protein HypB, both GTP
hydrolases involved in loading nickel into the
metallocenters of their respective target enzymes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Molybdopterin].
Length = 155
Score = 29.3 bits (66), Expect = 0.80
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 56 VIGICGGSASGKTTVATKIIESL 78
V+ I G SGKTT+ +++++L
Sbjct: 1 VLQIVGPKNSGKTTLIERLVKAL 23
>gnl|CDD|116541 pfam07931, CPT, Chloramphenicol phosphotransferase-like protein.
The members of this family are all similar to
chloramphenicol 3-O phosphotransferase (CPT) expressed
by Streptomyces venezuelae. Chloramphenicol (Cm) is a
metabolite produced by this bacterium that can inhibit
ribosomal peptidyl transferase activity and therefore
protein production. By transferring a phosphate group
to the C-3 hydroxyl group of Cm, CPT inactivates this
potentially lethal metabolite.
Length = 174
Score = 29.3 bits (66), Expect = 0.80
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 91
+I + GGS+SGK+++A + + L+ PW+ +D+F
Sbjct: 3 IILLNGGSSSGKSSIARALQDILDGPWLH-FGVDAF 37
>gnl|CDD|237066 PRK12338, PRK12338, hypothetical protein; Provisional.
Length = 319
Score = 29.7 bits (67), Expect = 0.81
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESLNV 80
M +P+VI I S GK+T+A+++ +LN+
Sbjct: 1 MRKPYVILIGSASGIGKSTIASELARTLNI 30
>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins
in this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 29.3 bits (66), Expect = 0.86
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVT 84
+I I G SGKTTVA + E L++ ++
Sbjct: 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30
>gnl|CDD|237003 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
1-carboxyvinyltransferase/cytidine monophosphate kinase;
Provisional.
Length = 661
Score = 30.0 bits (68), Expect = 0.86
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHA 96
A + VI I G +ASGK TVA ++ E+L + L S + YR+ A
Sbjct: 430 ALFSVAQADADRVPVICIDGPTASGKGTVAARVAEALG--YHYLDS-GALYRLTA 481
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 29.3 bits (66), Expect = 0.94
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDS 90
I I G S SGK+T+A K+ + N P +L +D+
Sbjct: 3 IAIIGYSGSGKSTLARKLSQHYNCP---VLHLDT 33
>gnl|CDD|234579 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 29.3 bits (67), Expect = 0.96
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESLN 79
M++ VI I G + SGK TVA + + L
Sbjct: 1 MMKAIVIAIDGPAGSGKGTVAKILAKKLG 29
Score = 27.4 bits (62), Expect = 4.8
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 2 KVFVDTDADVRLARRLKRDILARGRD 27
K+F+ A+ R RR K ++ A+G
Sbjct: 143 KIFLTASAEERAERRYK-ELQAKGIS 167
>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP)
to adenosine monophosphates (AMP) and to yield
adenosine diphosphates (ADP). This enzyme is required
for the biosynthesis of ADP and is essential for
homeostasis of adenosine phosphates.
Length = 194
Score = 29.1 bits (66), Expect = 1.0
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 59 ICGGSASGKTTVATKIIESLNVP 81
+ G SGK T A ++ + +P
Sbjct: 4 LLGPPGSGKGTQAERLAKKYGLP 26
>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate
transferase; Reviewed.
Length = 307
Score = 29.7 bits (68), Expect = 1.0
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYR 93
M++P VI I G +ASGKT +A ++ + LN ++S DS YR
Sbjct: 1 MMKPKVIVIVGPTASGKTALAIELAKRLN---GEIISADSMQVYR 42
>gnl|CDD|236151 PRK08099, PRK08099, bifunctional DNA-binding transcriptional
repressor/ NMN adenylyltransferase; Provisional.
Length = 399
Score = 29.6 bits (67), Expect = 1.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 46 FIAPSMVEPF---VIGICGGSASGKTTVATKI 74
+I P+ V PF + I GG +SGK+T+ K+
Sbjct: 209 YI-PTEVRPFFVRTVAILGGESSGKSTLVNKL 239
>gnl|CDD|173195 PRK14733, coaE, dephospho-CoA kinase; Provisional.
Length = 204
Score = 29.2 bits (65), Expect = 1.1
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 50 SMVEPFVIGICGGSASGKTTVATKII-ESLNV 80
+ + + IGI GG ASGK+T AT+I+ E LN+
Sbjct: 2 NFINTYPIGITGGIASGKST-ATRILKEKLNL 32
>gnl|CDD|215427 PLN02796, PLN02796, D-glycerate 3-kinase.
Length = 347
Score = 29.3 bits (66), Expect = 1.2
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 44 STFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT--LLSMDSFYRVHAD 97
S F + P VIGI GKTT+ ++ N LS+D FY AD
Sbjct: 90 SKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAAD 145
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 29.5 bits (67), Expect = 1.4
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVP 81
+G+ G S SGK+T+A +I+ L P
Sbjct: 319 TLGLVGESGSGKSTLA-RILAGLLPP 343
>gnl|CDD|130492 TIGR01425, SRP54_euk, signal recognition particle protein SRP54.
This model represents examples from the eukaryotic
cytosol of the signal recognition particle protein
component, SRP54. This GTP-binding protein is a
component of the eukaryotic signal recognition particle,
along with several other protein subunits and a 7S RNA.
Some species, including Arabidopsis, have several
closely related forms. The extreme C-terminal region is
glycine-rich and lower in complexity, poorly conserved
between species, and excluded from this model.
Length = 429
Score = 29.4 bits (66), Expect = 1.4
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 5 VDTDADVRLARRLKRDI--------LARGRDLEGVIKQYV-----NMVKPAFSTFIAPSM 51
+++D +++L R+L+ +I +A G + +I+ V N+V P F P
Sbjct: 39 LESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNLVDPGVEAF-TPKK 97
Query: 52 VEPFVIGICGGSASGKTTVATKI 74
+ VI G SGKTT TK+
Sbjct: 98 GKQNVIMFVGLQGSGKTTTCTKL 120
>gnl|CDD|233417 TIGR01447, recD, exodeoxyribonuclease V, alpha subunit. This
family describes the exodeoxyribonuclease V alpha
subunit, RecD. RecD is part of a RecBCD complex. A
related family in the Gram-positive bacteria separates
in a phylogenetic tree, has an additional N-terminal
extension of about 200 residues, and is not supported as
a member of a RecBCD complex by neighboring genes. The
related family is consequently described by a different
model [DNA metabolism, DNA replication, recombination,
and repair].
Length = 586
Score = 29.3 bits (66), Expect = 1.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 59 ICGGSASGKTTVATKIIESLN 79
I GG +GKTT +++ +L
Sbjct: 165 ITGGPGTGKTTTVARLLLALV 185
>gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated.
Length = 223
Score = 28.8 bits (65), Expect = 1.5
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 54 PFVIGICGGSASGKTTVA---TKIIESLNVPWVTLLSMDSFYR 93
P + I G +ASGKTT A + I+ P V S+D F+
Sbjct: 22 PLRVAIDGITASGKTTFADELAEEIKKRGRP-VIRASIDDFHN 63
Score = 28.0 bits (63), Expect = 2.7
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 2 KVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIA 48
K+F+DTD +V R KRD A G E K Y+ PA +IA
Sbjct: 150 KIFLDTDFEVSRRRGAKRDTEAFGSYEE-AEKMYLARYHPAQKLYIA 195
>gnl|CDD|217465 pfam03266, NTPase_1, NTPase. This domain is found across all
species from bacteria to human, and the function was
determined first in a hyperthermophilic bacterium to be
an NTPase. The structure of one member-sequence
represents a variation of the RecA fold, and implies
that the function might be that of a DNA/RNA modifying
enzyme. The sequence carries both a Walker A and Walker
B motif which together are characteristic of ATPases or
GTPases. The protein exhibits an increased expression
profile in human liver cholangiocarcinoma when compared
to normal tissue.
Length = 168
Score = 28.3 bits (64), Expect = 1.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTL 85
I I G GKTT+ K+IE L V +
Sbjct: 1 RIFITGPPGVGKTTLVKKVIELLKSEGVKV 30
>gnl|CDD|172360 PRK13833, PRK13833, conjugal transfer protein TrbB; Provisional.
Length = 323
Score = 29.0 bits (65), Expect = 1.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 57 IGICGGSASGKTTVATKII 75
I I GG+ SGKTT+A +I
Sbjct: 147 IVISGGTGSGKTTLANAVI 165
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 28.8 bits (65), Expect = 1.8
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 28 LEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKI 74
L + + + V P +PFVI G + GKTT K+
Sbjct: 113 LREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKL 159
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 985
Score = 28.9 bits (65), Expect = 2.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 10/39 (25%)
Query: 152 RAGETMEQAVHDVCKDIR----------IGKILIQTNKA 180
R GE M++AV CK +R +GKI +Q A
Sbjct: 626 RRGEDMDEAVARECKAVRESVGLFDASTLGKIEVQGPDA 664
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 28.1 bits (63), Expect = 2.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWV 83
VI I G SGKTTVA ++ E L + V
Sbjct: 2 VITISGLPGSGKTTVARELAEHLGLKLV 29
>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK)
catalyzes the phosphorylation of adenosine
5'-phosphosulfate to form 3'-phosphoadenosine
5'-phosphosulfate (PAPS). The end-product PAPS is a
biologically "activated" sulfate form important for the
assimilation of inorganic sulfate.
Length = 149
Score = 27.8 bits (63), Expect = 2.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 56 VIGICGGSASGKTTVATKIIESLN 79
VI + G S SGK+T+A + E L
Sbjct: 1 VIWLTGLSGSGKSTIARALEEKLF 24
>gnl|CDD|237730 PRK14493, PRK14493, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MoaE;
Provisional.
Length = 274
Score = 28.4 bits (64), Expect = 2.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 56 VIGICGGSASGKTTVATKIIESL 78
V+ I G A+GKTT+ ++++ L
Sbjct: 3 VLSIVGYKATGKTTLVERLVDRL 25
>gnl|CDD|235825 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 28.2 bits (63), Expect = 2.2
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 48 APSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 92
+ I G S SGKTT+A + L+ +D Y
Sbjct: 9 RLCGGGMITVLIDGRSGSGKTTLAGALAARTG---FQLVHLDDLY 50
>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase. Alternate names
include delta(2)-isopentenylpyrophosphate transferase,
IPP transferase, 2-methylthio-N6-isopentyladenosine
tRNA modification enzyme. Catalyzes the first step in
the modification of an adenosine near the anticodon to
2-methylthio-N6-isopentyladenosine. Understanding of
substrate specificity has changed [Protein synthesis,
tRNA and rRNA base modification].
Length = 287
Score = 28.5 bits (64), Expect = 2.4
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS 90
VI + G +ASGK+ ++ ++ + LN ++S+DS
Sbjct: 1 VIFLMGPTASGKSQLSIQLAQKLN---AEIISVDS 32
>gnl|CDD|173193 PRK14731, coaE, dephospho-CoA kinase; Provisional.
Length = 208
Score = 28.1 bits (63), Expect = 2.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 54 PFVIGICGGSASGKTTV 70
PF++G+ GG SGK+TV
Sbjct: 5 PFLVGVTGGIGSGKSTV 21
>gnl|CDD|224533 COG1618, COG1618, Predicted nucleotide kinase [Nucleotide
transport and metabolism].
Length = 179
Score = 28.1 bits (63), Expect = 2.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 57 IGICGGSASGKTTVATKIIESL 78
I I G GKTT+ KI E L
Sbjct: 8 IFITGRPGVGKTTLVLKIAEKL 29
>gnl|CDD|238139 cd00227, CPT, Chloramphenicol (Cm) phosphotransferase (CPT).
Cm-inactivating enzyme; modifies the primary (C-3)
hydroxyl of the antibiotic. Related structurally to
shikimate kinase II.
Length = 175
Score = 27.9 bits (62), Expect = 2.7
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 61 GGSASGKTTVATKIIESLNVPWVTLLSMDSF 91
GGS++GK+++A + L PW+ +DSF
Sbjct: 9 GGSSAGKSSIARALQSVLAEPWLH-FGVDSF 38
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 27.4 bits (61), Expect = 2.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 57 IGICGGSASGKTTVATKIIESLNVP 81
I I G SGKTT+A ++ E L
Sbjct: 1 ILITGTPGSGKTTLAKELAERLGDV 25
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 27.5 bits (62), Expect = 2.9
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 54 PFVIGICGGSASGKTTVATKIIE 76
V+ G S GK+T+ +++E
Sbjct: 1 LIVL--SGPSGVGKSTLLKRLLE 21
>gnl|CDD|237808 PRK14734, coaE, dephospho-CoA kinase; Provisional.
Length = 200
Score = 27.9 bits (62), Expect = 3.1
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 12/45 (26%)
Query: 55 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADII 99
IG+ GG SGK+TVA LLS + F V AD +
Sbjct: 2 LRIGLTGGIGSGKSTVA------------DLLSSEGFLIVDADQV 34
>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 27.6 bits (62), Expect = 3.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESL 78
+ VI G S SGK+T+A + E L
Sbjct: 22 KGAVIWFTGLSGSGKSTIANALEEKL 47
>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 27.9 bits (63), Expect = 3.2
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 48 APSMVEPFVIGICGGSASGKTTVATKIIESL 78
A IG+ G SGKT + K + +L
Sbjct: 7 AEKNRPMLRIGVGGPPGSGKTALIEKTLRAL 37
>gnl|CDD|233879 TIGR02468, sucrsPsyn_pln, sucrose phosphate synthase/possible
sucrose phosphate phosphatase, plant. Members of this
family are sucrose-phosphate synthases of plants. This
enzyme is known to exist in multigene families in
several species of both monocots and dicots. The
N-terminal domain is the glucosyltransferase domain.
Members of this family also have a variable linker
region and a C-terminal domain that resembles sucrose
phosphate phosphatase (SPP) (EC 3.1.3.24) (see
TIGR01485), the next and final enzyme of sucrose
biosynthesis. The SPP-like domain likely serves a
binding and not a catalytic function, as the reported
SPP is always encoded by a distinct protein.
Length = 1050
Score = 28.2 bits (63), Expect = 3.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 46 FIAPSMVEPFVIGICGGSASGKTTVATK 73
FI P+ +EPF + + +A G VATK
Sbjct: 575 FINPAFIEPFGLTLIEAAAHGLPMVATK 602
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 28.1 bits (63), Expect = 3.3
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 59 ICGGSASGKTTVATKIIESL---NVPWVTLLSMDSFYR 93
I G + +GKT + + ++ P + D+
Sbjct: 441 IIGPTGAGKTVLLSFLLAQALKYGNPQIVAFDKDNGAY 478
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 27.5 bits (62), Expect = 3.5
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESLNV 80
M + +I + G S GK+T+ ++E +
Sbjct: 1 MSKGLLIVLSGPSGVGKSTLVKALLEDDKL 30
>gnl|CDD|169400 PRK08356, PRK08356, hypothetical protein; Provisional.
Length = 195
Score = 27.4 bits (61), Expect = 3.6
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 52 VEPFVIGICGGSASGKTTVATKIIESL 78
VE ++G+ G A+GKTTVA K E
Sbjct: 3 VEKMIVGVVGKIAAGKTTVA-KFFEEK 28
>gnl|CDD|225804 COG3265, GntK, Gluconate kinase [Carbohydrate transport and
metabolism].
Length = 161
Score = 27.3 bits (61), Expect = 3.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 61 GGSASGKTTVATKIIESLNVPWV 83
G S SGK+TV + + E L ++
Sbjct: 2 GVSGSGKSTVGSALAERLGAKFI 24
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain.
Length = 285
Score = 27.7 bits (62), Expect = 4.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLNV 80
V+GI G GKTT+A +I +V
Sbjct: 18 NLGVVGIVGMGGVGKTTLAKQIYNDDSV 45
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 27.0 bits (60), Expect = 4.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 55 FVIGICGGSASGKTTVATKIIESL 78
++ + G SGKTT+ K++ L
Sbjct: 1 PIVLVVGPKDSGKTTLIRKLLNYL 24
>gnl|CDD|236023 PRK07474, PRK07474, sulfur oxidation protein SoxY; Provisional.
Length = 154
Score = 27.3 bits (61), Expect = 4.3
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 62 GSASGKTTVATKI--IESLNVPWVTLLSMDSFYRVHADIIVPRGG 104
G A+G+ +T+I ++ NV + +S S + A + V GG
Sbjct: 107 GPAAGRAEASTRIRLAQTQNVIAIAEMSDGSLWSAKATVKVTIGG 151
>gnl|CDD|140006 PRK13949, PRK13949, shikimate kinase; Provisional.
Length = 169
Score = 27.4 bits (61), Expect = 4.3
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL--LSMDSFYRVHADIIVPRGGE 105
M F++G G +GKTT+ + L + ++ L + F++ DI RG
Sbjct: 1 MARIFLVGYMG---AGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEA 54
>gnl|CDD|224985 COG2074, COG2074, 2-phosphoglycerate kinase [Carbohydrate transport
and metabolism].
Length = 299
Score = 27.7 bits (62), Expect = 4.6
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP 101
M P +I I G S GK+T+A ++ L + +++S DS V II P
Sbjct: 86 MKRPLIILIGGASGVGKSTIAGELARRLGIR--SVISTDSIREVLRKIISP 134
>gnl|CDD|237475 PRK13695, PRK13695, putative NTPase; Provisional.
Length = 174
Score = 27.2 bits (61), Expect = 4.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 57 IGICGGSASGKTTVATKIIESL 78
IGI G GKTT+ KI E L
Sbjct: 3 IGITGPPGVGKTTLVLKIAELL 24
>gnl|CDD|222885 PHA02575, 1, deoxynucleoside monophosphate kinase; Provisional.
Length = 227
Score = 27.4 bits (61), Expect = 5.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 56 VIGICGGSASGKTTVATKIIESLN 79
+I I G SGK TVA IIE+ N
Sbjct: 2 LIAISGKKRSGKDTVADFIIENYN 25
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 26.9 bits (60), Expect = 5.5
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 6/37 (16%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 92
+IG GGS GK+T+A ++ E LN+P + +D+ +
Sbjct: 6 LIG-SGGS--GKSTLARQLGEKLNIP---VHHLDALF 36
>gnl|CDD|237727 PRK14489, PRK14489, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobA/MobB;
Provisional.
Length = 366
Score = 27.4 bits (61), Expect = 5.7
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 49 PSMVEPFVIGICGGSASGKTTVATKIIESLN 79
+ P ++G+ G S +GKTT+ K+I L
Sbjct: 201 TTGAPP-LLGVVGYSGTGKTTLLEKLIPELI 230
>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein.
Length = 234
Score = 27.2 bits (60), Expect = 5.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 47 IAPSMVEPFVIGICGGSASGKTTVATKIIESL 78
+ PF+ + GG SGK T KI+E+
Sbjct: 36 SSSKEKTPFITFVLGGPGSGKGTQCEKIVETF 67
>gnl|CDD|132565 TIGR03526, selenium_YgeY, putative selenium metabolism hydrolase.
SelD, selenophosphate synthase, is the selenium donor
protein for both selenocysteine and selenouridine
biosynthesis systems, but it occurs also in a few
prokaryotes that have neither of those pathways. The
method of partial phylogenetic profiling , starting from
such orphan-selD genomes, identifies this protein as one
of those most strongly correlated to SelD occurrence.
Its distribution is also well correlated with that of
family TIGR03309, a putative accessory protein of labile
selenium (non-selenocysteine) enzyme maturation. This
family includes the uncharacterized YgeY of Escherichia
coli, and belongs to a larger family of metalloenzymes
in which some are known peptidases, others enzymes of
different types.
Length = 395
Score = 27.5 bits (61), Expect = 6.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 139 RCAVSKICGVSI---LRAGETMEQAVHDV 164
RCAV+ C +SI L GET E A+ +
Sbjct: 245 RCAVADGCTISIDRRLTWGETWEYALEQI 273
>gnl|CDD|238983 cd02025, PanK, Pantothenate kinase (PanK) catalyzes the
phosphorylation of pantothenic acid to form
4'-phosphopantothenic, which is the first of five steps
in coenzyme A (CoA) biosynthetic pathway. The reaction
carried out by this enzyme is a key regulatory point in
CoA biosynthesis.
Length = 220
Score = 26.9 bits (60), Expect = 6.0
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPW-----VTLLSMDSF 91
+IGI G A GK+T A +++++L W V L++ D F
Sbjct: 1 IIGIAGSVAVGKSTTA-RVLQALLSRWPDHPNVELITTDGF 40
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline
transporter PROT; solute-binding domain. PROT is a
high-affinity L-proline transporter that transports
L-proline, and may have a role in excitatory
neurotransmission. Human PROT is encoded by the SLC6A7
gene, a potential susceptible gene for asthma. PROT is
expressed in the brain. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 544
Score = 27.4 bits (61), Expect = 6.1
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 31/120 (25%)
Query: 21 ILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV 80
+L RG LEG +K + P F +A S V A++I SL +
Sbjct: 220 LLVRGVTLEGALKGIQFYLTPDFHR-LASSQVW--------------YDAASQIFYSLGI 264
Query: 81 PWVTLLSMDSFYRVHADI-----IVPRGGENC-------VAIDLIVQHIHSQLQAGVSVD 128
+ LL+M S+ + + +I I+ G NC AI ++ H+ +L GV V
Sbjct: 265 GFGGLLTMASYNKFNNNIYRDTLIITLG--NCITSVFAGFAIFSVLGHMAHEL--GVPVK 320
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 27.2 bits (61), Expect = 6.2
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPW 82
+GI G S SGK+T+A +++ L P
Sbjct: 35 TLGIVGESGSGKSTLA-RLLAGLEKPS 60
>gnl|CDD|218199 pfam04665, Pox_A32, Poxvirus A32 protein. The A32 protein is
thought to be involved in viral DNA packaging.
Length = 241
Score = 27.0 bits (60), Expect = 6.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 54 PFVIGICGGSASGKTT 69
PF + I GGS SGKTT
Sbjct: 13 PFRMAIVGGSGSGKTT 28
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 27.3 bits (61), Expect = 7.0
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 24/91 (26%)
Query: 12 RLARRLKRDILARGRDL---EGVIKQYV------NMVKPAFSTFIAPSMVEPFVIGI--- 59
LA R K +L + ++ I QY+ + + P F I +++ V +
Sbjct: 374 LLAERFK-KLLDKMDEIFKGSVDILQYMAGVAWLHCLLPNFDDVIY-DILKLIVENVPKR 431
Query: 60 -----CGGSASGKTTVATKIIE-----SLNV 80
G SGKTT+A +++ SLNV
Sbjct: 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 26.7 bits (60), Expect = 7.0
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 56 VIGICGGSASGKTTVATKIIESLN 79
V+ I G S SGK+T ++ LN
Sbjct: 30 VVVIIGPSGSGKST----LLRCLN 49
>gnl|CDD|236686 PRK10416, PRK10416, signal recognition particle-docking protein
FtsY; Provisional.
Length = 318
Score = 27.0 bits (61), Expect = 7.8
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 12 RLARRLKRDILARGRDLEGVIKQY-VNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTT 69
L R+KR L +L+ ++K+ +++P +PFVI + G + GKTT
Sbjct: 72 ELRERVKRKNLKDPEELKELLKEELAEILEPVEKPLNIEE-KKPFVILVVGVNGVGKTT 129
>gnl|CDD|233709 TIGR02073, PBP_1c, penicillin-binding protein 1C. This subfamily
of the penicillin binding proteins includes the member
from E. coli designated penicillin-binding protein 1C.
Members have both transglycosylase and transpeptidase
domains and are involved in forming cross-links in the
late stages of peptidoglycan biosynthesis. All members
of this subfamily are presumed to have the same basic
function [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 727
Score = 27.0 bits (60), Expect = 8.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 66 GKTTVATKIIESLNVPWVTLLSM 88
G + SLN+P V LL
Sbjct: 359 GPVPAREALARSLNIPAVRLLER 381
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance
to organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 26.8 bits (60), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVP 81
++ I GGS SGK+T+ ++I L P
Sbjct: 36 ILAILGGSGSGKSTL-LRLILGLLRP 60
>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyzes the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 26.1 bits (58), Expect = 8.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 54 PFVIGICGGSASGKTTVA 71
I G S SGK+T+A
Sbjct: 2 GCTIWFTGLSGSGKSTIA 19
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 26.4 bits (59), Expect = 8.8
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 61 GGSASGKTTVATKIIESLNVPWV 83
GG ++GKTT+ + + + P V
Sbjct: 6 GGPSTGKTTLL-EALAARGYPVV 27
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family
includes the NTP binding domain of F1 and V1 H+ATPases,
DnaB and related helicases as well as bacterial RecA
and related eukaryotic and archaeal recombinases. This
group also includes bacterial conjugation proteins and
related DNA transfer proteins involved in type II and
type IV secretion.
Length = 165
Score = 26.3 bits (58), Expect = 8.9
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVP 81
+I + G + SGKTT+A ++ ++
Sbjct: 1 LILVFGPTGSGKTTLALQLALNIATK 26
>gnl|CDD|179560 PRK03333, coaE, dephospho-CoA kinase/protein folding accessory
domain-containing protein; Provisional.
Length = 395
Score = 26.9 bits (60), Expect = 9.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 57 IGICGGSASGKTTVAT 72
IG+ GG +GK+TVA
Sbjct: 4 IGLTGGIGAGKSTVAA 19
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de
novo or salvage biosynthesis of thymidine triphosphate
(TTP).
Length = 200
Score = 26.5 bits (59), Expect = 9.1
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 55 FVIGICGGSASGKTTVATKIIESLN 79
I G +GKTT+ + E L
Sbjct: 1 MFIVFEGIDGAGKTTLIELLAERLE 25
>gnl|CDD|237729 PRK14491, PRK14491, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MoeA;
Provisional.
Length = 597
Score = 26.9 bits (60), Expect = 9.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 56 VIGICGGSASGKTTVATKIIESLN 79
++G C S +GKTT+ ++I LN
Sbjct: 12 LLGFCAYSGTGKTTLLEQLIPELN 35
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They
belong to the subfamily C of the ATP-binding cassette
(ABC) superfamily of transport proteins. The ABCC
subfamily contains transporters with a diverse
functional spectrum that includes ion transport, cell
surface receptor, and toxin secretion activities. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains, each composed of six
transmembrane (TM) helices, and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 171
Score = 26.2 bits (59), Expect = 9.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 56 VIGICGGSASGKTTVA 71
+ I G S SGK+T+
Sbjct: 30 KVAIVGPSGSGKSTLL 45
>gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles
in homologous recombination, DNA repair, and the
induction of the SOS response. RecA couples ATP
hydrolysis to DNA strand exchange. While prokaryotes
have a single RecA protein, eukaryotes have multiple
RecA homologs such as Rad51, DMC1 and Rad55/57.
Archaea have the RecA-like homologs radA and radB.
Length = 226
Score = 26.4 bits (59), Expect = 9.3
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 56 VIGICGGSASGKTTVATKII 75
+ I G SGKT + ++
Sbjct: 21 ITEIFGEFGSGKTQLCLQLA 40
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 26.9 bits (60), Expect = 9.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 56 VIGICGGSASGKTTVA 71
+GI G S SGK+T+A
Sbjct: 364 ALGIIGPSGSGKSTLA 379
>gnl|CDD|172457 PRK13951, PRK13951, bifunctional shikimate
kinase/3-dehydroquinate synthase; Provisional.
Length = 488
Score = 26.8 bits (59), Expect = 9.4
Identities = 9/29 (31%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 55 FVIGICGGSASGKTTVATKIIESLNVPWV 83
F++G+ G SGK+T+ ++ E L++ ++
Sbjct: 4 FLVGMMG---SGKSTIGKRVSEVLDLQFI 29
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.407
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,220,074
Number of extensions: 943701
Number of successful extensions: 1426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1421
Number of HSP's successfully gapped: 188
Length of query: 199
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 107
Effective length of database: 6,857,034
Effective search space: 733702638
Effective search space used: 733702638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)