RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9640
(199 letters)
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 113 bits (285), Expect = 7e-32
Identities = 42/122 (34%), Positives = 57/122 (46%), Gaps = 42/122 (34%)
Query: 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
+KVFVD DAD R RRLKRD+L RGR LEGV+ QY+ VKP F+ P
Sbjct: 127 LKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEP----------- 175
Query: 61 GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
+ +AD+IVPRGG+N VA++++ ++
Sbjct: 176 -------------------------------TKRYADVIVPRGGQNPVALEMLAAKALAR 204
Query: 121 LQ 122
L
Sbjct: 205 LA 206
Score = 85.0 bits (211), Expect = 8e-21
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADI-IVPRGGEN----- 106
+PFVIGI GG+ASGKTT+A + +L V LL MD +Y+ + + R N
Sbjct: 5 KPFVIGIAGGTASGKTTLAQALARTLG-ERVALLPMDHYYKDLGHLPLEERLRVNYDHPD 63
Query: 107 CVAIDLIVQHIHSQLQAGVSVDMPQGYTYE-GKR 139
+ L ++H L G+ V+MP Y + R
Sbjct: 64 AFDLALYLEHAQ-ALLRGLPVEMPV-YDFRAYTR 95
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 106 bits (267), Expect = 7e-29
Identities = 53/142 (37%), Positives = 66/142 (46%), Gaps = 46/142 (32%)
Query: 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
MK+FVDTDAD RL+RR+ RDI RGRDLE ++ QY+ VKPAF F P
Sbjct: 153 MKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLP----------- 201
Query: 61 GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
+ +AD+I+PRG +N VAI+LIVQHI
Sbjct: 202 -------------------------------TKKYADVIIPRGADNLVAINLIVQHIQDI 230
Query: 121 LQAG----VSVDMPQGYTYEGK 138
L G + GYT K
Sbjct: 231 LNGGPSKRQTNGCLNGYTPSRK 252
Score = 81.8 bits (202), Expect = 3e-19
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV-------PWVTLLSMDSFYRV 94
P+ EPF+IG+ GG+ASGK++V KI++ L V +LS DSFYRV
Sbjct: 10 TLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV 69
Query: 95 HADIIVPRGGENCV------AID--LIVQHIHSQLQAGVSVDMPQGYTYE-GKRC 140
+ + A D LI++ + ++ G +V +P Y + R
Sbjct: 70 LTSEQKAKALKGQFNFDHPDAFDNELILKTLK-EITEGKTVQIPV-YDFVSHSRK 122
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 102 bits (257), Expect = 2e-27
Identities = 45/122 (36%), Positives = 60/122 (49%), Gaps = 43/122 (35%)
Query: 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
+++FVDTD+DVRL+RR+ RD+ RGRDLE ++ QY VKPAF F P
Sbjct: 156 LRLFVDTDSDVRLSRRVLRDV-RRGRDLEQILTQYTTFVKPAFEEFCLP----------- 203
Query: 61 GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
+ +AD+I+PRG +N VAI+LIVQHI
Sbjct: 204 -------------------------------TKKYADVIIPRGVDNMVAINLIVQHIQDI 232
Query: 121 LQ 122
L
Sbjct: 233 LN 234
Score = 79.1 bits (195), Expect = 2e-18
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW-------VTLLSMDSFYRVHADII 99
+ + PF+IG+ GG+ASGK+TV KI+E L V +LS D FY+V
Sbjct: 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQ 77
Query: 100 VPRGGEN--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYE-GKRC 140
+ + DL+ + + + G +V++P Y + R
Sbjct: 78 KAKALKGQYNFDHPDAFDNDLMHRTLK-NIVEGKTVEVPT-YDFVTHSRL 125
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 80.1 bits (198), Expect = 4e-19
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLNVPW--VTLLSMDSFYRVHADIIVPRGGE----- 105
V+GI G S SGKTT+A ++ ++L V + MD A E
Sbjct: 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYY 80
Query: 106 -NCVAIDLIVQHIHSQLQAGVSVDMPQGYTYE 136
++ + + QL+A + +P Y +E
Sbjct: 81 YLQWDVEWLTHQLFRQLKASHQLTLPF-YDHE 111
Score = 62.0 bits (151), Expect = 2e-12
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPS 50
V++D ++R AR + ++++ I +Y + + P
Sbjct: 146 FVVYLDCPREIRFARENDQ----VKQNIQKFINRYWK-AEDYYLETEEPI 190
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 75.7 bits (186), Expect = 3e-17
Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 17/144 (11%)
Query: 44 STFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG 103
S+ + P + F+IGI G + SGKTT+A + + L P +++S D F++ ++I +
Sbjct: 11 SSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL--PNCSVISQDDFFKPESEIETDKN 68
Query: 104 GE------NCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETM 157
G + ++ ++ I + + + I G +
Sbjct: 69 GFLQYDVLEALNMEKMMSAIS-CWMESARHSVVSTDQESAEEIPILIIEGFLLFNYKPLD 127
Query: 158 EQ--------AVHDVCKDIRIGKI 173
++ CK R ++
Sbjct: 128 TIWNRSYFLTIPYEECKRRRSTRV 151
Score = 51.0 bits (122), Expect = 2e-08
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 8/81 (9%)
Query: 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
F+ + RR R + V P + + + +
Sbjct: 132 RSYFLTIPYEECKRRRSTRV-----YQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYL 186
Query: 61 GGSASGK---TTVATKIIESL 78
G+ S + V +I+ L
Sbjct: 187 DGTKSEEDLFLQVYEDLIQEL 207
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase;
1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D
1jlr_A* 1jls_B* 1upf_D 1upu_D*
Length = 243
Score = 68.8 bits (168), Expect = 2e-14
Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
V P +Y G SKICGVSI+RAGE+ME + VC+ +RIGKILIQ ++ T EP
Sbjct: 85 KEVTTPLDVSYHGVSFY-SKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEP 143
Query: 185 ELYYLRLPKDIKDYK 199
+L Y +LP DI++
Sbjct: 144 KLIYEKLPADIRERW 158
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 64.7 bits (157), Expect = 7e-13
Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 17/136 (12%)
Query: 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
+K+ V ++ +++ RD RG E V + A+ I P + +
Sbjct: 150 LKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILR-RMHAYVHCIVPQFSQTDINFQR 208
Query: 61 GGSASGKTTVATKIIESL-------------NVPWVTLLSM--DSFYRVHADIIVPRGGE 105
+ I + + + L SM S+ I+VP G +
Sbjct: 209 VPVVDTSNPFIARWIPTADESVVVIRFRNPRGIDFPYLTSMIHGSWMSRANSIVVP-GNK 267
Query: 106 NCVAIDLIVQHIHSQL 121
+A+ LI+ + ++
Sbjct: 268 LDLAMQLILTPLIDRV 283
Score = 58.1 bits (140), Expect = 1e-10
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 52 VEPFVIGICGGSASGKTTVA---TKIIESLNVPWVTLLSMDSFYR 93
+ +I + G S +G +TV +I V V + D+F+R
Sbjct: 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAV-SIEGDAFHR 46
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 60.1 bits (146), Expect = 1e-11
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSFYRVHAD 97
++ + G SGK+T++ + +L+ ++ MD F+ +
Sbjct: 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL 67
Score = 48.2 bits (115), Expect = 2e-07
Identities = 6/51 (11%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSM 51
+ + ++ AR ++R L G + + + + + I +
Sbjct: 150 VSIRLEVPMADLEARLVQRW-LDHGLNHDAAVARAQGNDLAN-ARAIEAAR 198
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage,
oligomerization, structural genomics, RI structural
genomics/proteomics initiative; 2.10A {Thermus
thermophilus} SCOP: c.61.1.1
Length = 208
Score = 56.0 bits (135), Expect = 4e-10
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
+V+ P K + K+ V+ILRAG M + + + R+G I + + + P
Sbjct: 52 TTVETPIAPAR-VKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNP 110
Query: 185 ELYYLRLPKDIKD 197
YY++LP DI +
Sbjct: 111 VQYYIKLPPDIAE 123
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
{Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 55.7 bits (134), Expect = 5e-10
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
V ++ P A K+ + ILRAG M + + ++G I + + T +P
Sbjct: 53 VEIETPVSKARAKVI-AGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKP 111
Query: 185 ELYYLRLPKDIKDYK 199
YY++LP D+++
Sbjct: 112 VEYYVKLPSDVEERD 126
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI,
protein structure initiative, joint center for structu
genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP:
c.61.1.1
Length = 221
Score = 55.7 bits (134), Expect = 5e-10
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
V V+ P T + I V ILRAG M + ++ + +G I I + T +
Sbjct: 65 VEVETPITKTIGYRI-NDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQA 123
Query: 185 ELYYLRLPKDIKDYK 199
YY +LP D +
Sbjct: 124 VEYYAKLPPLNDDKE 138
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A
{Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Length = 308
Score = 55.7 bits (134), Expect = 1e-09
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYR 93
P++I I G A GK+T A + L+ V L++ D F
Sbjct: 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH 123
Score = 47.2 bits (112), Expect = 7e-07
Identities = 14/114 (12%), Positives = 30/114 (26%), Gaps = 35/114 (30%)
Query: 1 MKVFVDTDADVRLARRLKRDILARG---RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVI 57
++VD D+ + R + R D + Y + K
Sbjct: 217 FSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEA-------------- 262
Query: 58 GICGGSASGKTTVATKIIESLNVPWVTLLSMDSF---YRVHADIIVPRGGENCV 108
A + + +N ++ R A +I+ + + V
Sbjct: 263 ----------IKTAMTLWKEINWL-----NLKQNILPTRERASLILTKSANHAV 301
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis,
nucleotide binding binding, cytoplasm,
nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium
tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A*
3avo_A* 3avq_A*
Length = 312
Score = 55.7 bits (134), Expect = 1e-09
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 49 PSMVEPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYR 93
P PF+IG+ G A GK+T A + L P V L++ D F
Sbjct: 85 PDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLY 133
Score = 50.3 bits (120), Expect = 7e-08
Identities = 12/127 (9%), Positives = 26/127 (20%), Gaps = 61/127 (48%)
Query: 1 MKVFVDTDADVRLARRLKRDILAR---GRDLEGVIKQYVNM----------------VKP 41
++VD + + R + R D E Y +P
Sbjct: 220 FSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRTINRP 279
Query: 42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP 101
I P+ R A +++
Sbjct: 280 NLVENILPT------------------------------------------RPRATLVLR 297
Query: 102 RGGENCV 108
+ ++ +
Sbjct: 298 KDADHSI 304
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups,
carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Length = 321
Score = 53.1 bits (127), Expect = 1e-08
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYRVHAD 97
P++IGI G A GK+T + + L+ P V +++ D F +A
Sbjct: 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAK 139
Score = 40.4 bits (94), Expect = 2e-04
Identities = 14/108 (12%), Positives = 37/108 (34%), Gaps = 13/108 (12%)
Query: 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
++VFV D L + ++ + ++ V+ + K S F +
Sbjct: 219 LQVFVSDFFDFSLFVDAQAQVIQKWY-IDRVLSFWRTTFKDPHSYFHY----------LT 267
Query: 61 GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCV 108
S + A + +N + + + A +I+ + ++ +
Sbjct: 268 QMSETEVAAFAKHVWNEINKVNLMENILPY--KNRAQLILEKAADHSI 313
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 48.0 bits (114), Expect = 2e-07
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE----- 105
M P +I + G A+GKTT++ + L +P LLS D+F V D + E
Sbjct: 2 MQTPALIIVTGHPATGKTTLSQALATGLRLP---LLSKDAFKEVMFDGLGWSDREWSRRV 58
Query: 106 NCVAIDLIVQHIHSQLQAGVSV 127
AI ++ + LQ+G S+
Sbjct: 59 GATAIMMLYHTAATILQSGQSL 80
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 44.2 bits (103), Expect = 8e-06
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 5/72 (6%)
Query: 31 VIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL-----NVPWVTL 85
V+ + + + P I G SGK+ + +I L +
Sbjct: 8 VLDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGY 67
Query: 86 LSMDSFYRVHAD 97
S+D FY H D
Sbjct: 68 ASIDDFYLTHED 79
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 42.4 bits (99), Expect = 2e-05
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE----NCV 108
++ + G SGK+T+A + VP V S D + + I P + N +
Sbjct: 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRM 67
Query: 109 AIDLIVQHIHSQLQAGVSV 127
+ + + G V
Sbjct: 68 IMQIAADVAGRYAKEGYFV 86
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 39.7 bits (92), Expect = 2e-04
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQ 115
+I + GGS++GK+ + + L PW+ +DS + G D V
Sbjct: 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLA-FGVDSLIEAMPLKMQSAEGGIEFDADGGVS 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 5e-04
Identities = 35/222 (15%), Positives = 61/222 (27%), Gaps = 75/222 (33%)
Query: 2 KVFVDT--DADVR-LARRLKRDILARGRDLEGVIKQYVNMVKPAFST--FIAPSMV---E 53
+ FV+ + + L +K R + + Y+ ++ A V +
Sbjct: 80 QKFVEEVLRINYKFLMSPIK----TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 54 PFV--------------IGICGGSASGKTTVATKIIESL--------NVPWVT------- 84
P++ + I G SGKT VA + S + W+
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 85 ---LLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCA 141
L + I P I IHS + + Y + C
Sbjct: 196 ETVLEMLQKLLY----QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCL 247
Query: 142 VSKICGVSILRAGETMEQAVHDVC--KDIR---IG-KILIQT 177
+ +L +V K + KIL+ T
Sbjct: 248 L-------VLL----------NVQNAKAWNAFNLSCKILLTT 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus}
PDB: 3h0k_A
Length = 179
Score = 37.9 bits (88), Expect = 8e-04
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWV 83
VI I G SGK+ A K+++ +
Sbjct: 3 VILITGMPGSGKSEFA-KLLKERGAKVI 29
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849,
bifunctional coenzyme A synthase (COA synthase), S
genomics; HET: ACO UNL; 1.70A {Mus musculus}
Length = 281
Score = 38.0 bits (89), Expect = 0.001
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 19/67 (28%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADII----VPRGGENCVA 109
+V+G+ G S SGK++VA + +++L + D +D + GG A
Sbjct: 75 LYVLGLTGISGSGKSSVA-QRLKNLGAYII-----D------SDHLGHRAYAPGGP---A 119
Query: 110 IDLIVQH 116
+V+
Sbjct: 120 YQPVVEA 126
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3;
1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A*
1viy_A 1t3h_A 1n3b_A
Length = 218
Score = 37.5 bits (88), Expect = 0.001
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 19/70 (27%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADII----VPRGGEN 106
M +++ + GG SGK+TVA L + + D ADII V G
Sbjct: 1 MSLRYIVALTGGIGSGKSTVA-NAFADLGINVI-----D------ADIIARQVVEPGAP- 47
Query: 107 CVAIDLIVQH 116
A+ I H
Sbjct: 48 --ALHAIADH 55
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 36.9 bits (85), Expect = 0.001
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLN 79
++ I G S SGKTT+ T+++ L
Sbjct: 2 SLILSIVGTSDSGKTTLITRMMPILR 27
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 35.4 bits (81), Expect = 0.005
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 56 VIGICGGSASGKTTVATKIIESL 78
V + G SGKTT+ K + +
Sbjct: 6 VWQVVGYKHSGKTTLMEKWVAAA 28
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2
function project, S2F, structural genomics, transferase;
HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Length = 206
Score = 35.2 bits (82), Expect = 0.006
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 19/67 (28%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADII----VPRGGENCVA 109
+++G+ GG SGKTT+A + L VP V D AD++ V +
Sbjct: 2 TYIVGLTGGIGSGKTTIA-NLFTDLGVPLV-----D------ADVVAREVVAKDSP---L 46
Query: 110 IDLIVQH 116
+ IV+H
Sbjct: 47 LSKIVEH 53
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 34.9 bits (80), Expect = 0.008
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 5/75 (6%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP---RGGENCVAIDL 112
+ I G + GK+T ++ L+ + D + P +
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAY--IEGDIINHMVVGGYRPPWESDELLALTWKN 61
Query: 113 IVQHIHSQLQAGVSV 127
I + L A V
Sbjct: 62 ITDLTVNFLLAQNDV 76
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme
kinase, structural genomics, joint center for
structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga
maritima}
Length = 192
Score = 34.8 bits (81), Expect = 0.009
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLNVPWV 83
VIG+ G +GK+TV + V
Sbjct: 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVV 41
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 34.7 bits (79), Expect = 0.011
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 48 APSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83
A P I + G S SGK++V I E+ P++
Sbjct: 12 AAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus}
SCOP: c.37.1.1
Length = 203
Score = 34.0 bits (79), Expect = 0.017
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 12/47 (25%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIV 100
P +IGI G SGK+TVA ++ S P + D D +
Sbjct: 8 PIIIGITGNIGSGKSTVA-ALLRSWGYPVL-----D------LDALA 42
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 33.7 bits (76), Expect = 0.021
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 56 VIGICGGSASGKTTVATKIIESL 78
++ S +GKTT+ K+I +L
Sbjct: 8 LLAFAAWSGTGKTTLLKKLIPAL 30
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Length = 204
Score = 32.9 bits (76), Expect = 0.036
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 19/66 (28%)
Query: 55 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADII----VPRGGENCVAI 110
IG+ G GK+TVA ++ L + D AD + +G
Sbjct: 2 KRIGLTGNIGCGKSTVA-QMFRELGAYVL-----D------ADKLIHSFYRKGHP---VY 46
Query: 111 DLIVQH 116
+ +V+
Sbjct: 47 EEVVKT 52
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 32.9 bits (74), Expect = 0.048
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH 95
+P I + G S +GKTT+ + V ++ DSF H
Sbjct: 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIV-IIDGDSFRSQH 72
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 32.0 bits (73), Expect = 0.062
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWV 83
+I + G K+TVA K+ + L P +
Sbjct: 3 LIILEGPDCCFKSTVAAKLSKELKYPII 30
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 32.1 bits (73), Expect = 0.074
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESL--NVPWVTLLSMDSF 91
M + +I + G GK+T + + + L N V +L D
Sbjct: 1 MGDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 31.9 bits (72), Expect = 0.078
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL 85
M+ P I + G GKTT+ ++ + ++ +
Sbjct: 9 MLLP-NILLTGTPGVGKTTLGKELASKSGLKYINV 42
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.079
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 18 KRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVE 53
K+ + + L+ +K Y + PA + I + +E
Sbjct: 19 KQAL----KKLQASLKLYADDSAPALA--IKAT-ME 47
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif,
SAM, NAD, phosphoserine,
transferase/oxidoreductase/lyase complex; HET: SEP PGE
SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11
c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Length = 457
Score = 32.2 bits (74), Expect = 0.080
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 3 VFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMV-KPAFSTFIAPSMVE--PFVIGI 59
TD D + +R+ +R + N+V P ++FI PS+++ P ++ +
Sbjct: 76 AIAATD-DDTVNQRVSDAAESRRI--------FCNVVDAPKAASFIMPSIIDRSPLMVAV 126
Query: 60 CGGSAS 65
G S
Sbjct: 127 SSGGTS 132
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 32.2 bits (74), Expect = 0.085
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 50 SMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYRVHADI 98
M +PF+I I G +ASGKT ++ ++ + N ++S DS Y+ DI
Sbjct: 3 EMTKPFLIVIVGPTASGKTELSIEVAKKFNGE---IISGDSMQVYQ-GMDI 49
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin
biosynthesis, NAD, oxidoreducta porphyrin biosynthesis;
2.30A {Bacillus megaterium}
Length = 223
Score = 31.9 bits (73), Expect = 0.091
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 16/76 (21%)
Query: 3 VFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMV-KPAFSTFIAPSMVE--PFVIGI 59
+ V T+ D + + +K+ + L VNM + P+ + I
Sbjct: 95 IVVATN-DQAVNKFVKQH--IKNDQL-------VNMASSFSDGNIQIPAQFSRGRLSLAI 144
Query: 60 CGGSASGKTTVATKII 75
S G + + TK I
Sbjct: 145 ---STDGASPLLTKRI 157
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 31.5 bits (71), Expect = 0.092
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWV 83
+ + G S SGK+ VA+++ L+ ++
Sbjct: 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 31.8 bits (71), Expect = 0.12
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 56 VIGICGGSASGKTTVATKIIESLN 79
+I + G SGK T A I+ + +
Sbjct: 3 LIFLSGVKRSGKDTTADFIMSNYS 26
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 31.7 bits (71), Expect = 0.14
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 17/97 (17%)
Query: 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84
R+ ++ ++ + S + G + +GKT V+ I +
Sbjct: 24 FREDI--LRDAAIAIRYFVKNEVKFSNL------FLGLTGTGKTFVSKYIFNEIEEVKKE 75
Query: 85 LLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQL 121
+ + NC + Q + S L
Sbjct: 76 DEEYKDVKQAYV---------NCREVGGTPQAVLSSL 103
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 31.6 bits (71), Expect = 0.16
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 16/83 (19%)
Query: 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL------ 78
R+ + I++ +++ P + ++ I G + +GKT V ++ L
Sbjct: 24 HREDQ--IRKIASILAPLYREEKPNNIF------IYGLTGTGKTAVVKFVLSKLHKKFLG 75
Query: 79 NVPWVTL--LSMDSFYRVHADII 99
V + +D+ YRV AD++
Sbjct: 76 KFKHVYINTRQIDTPYRVLADLL 98
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
biosynthesis; HET: DST AMP; 2.10A {Agrobacterium
tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 31.3 bits (71), Expect = 0.16
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYR 93
+ I G + SGKT +A +I + P ++++D
Sbjct: 3 LHLIYGPTCSGKTDMAIQIAQETGWP---VVALDRVQCCP 39
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 30.9 bits (70), Expect = 0.19
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 93
+I G SGK+T A + I P ++ D + +
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKN--PGFYNINRDDYRQ 39
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 31.1 bits (71), Expect = 0.20
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 56 VIGICGGSASGKTTVATKII 75
++G+ G + GKTT KI+
Sbjct: 27 ILGVLGKNGVGKTT-VLKIL 45
Score = 26.9 bits (60), Expect = 5.3
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 56 VIGICGGSASGKTTVATKII 75
+IGI G + GKTT A +I+
Sbjct: 296 IIGILGPNGIGKTTFA-RIL 314
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 30.8 bits (69), Expect = 0.21
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 50 SMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83
+ +I I SG V K+ E L + +
Sbjct: 10 MGNKNLIITIEREYGSGGRIVGKKLAEELGIHFY 43
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 30.8 bits (69), Expect = 0.22
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 48 APSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83
+ + + G S SGKTT+A + + + +
Sbjct: 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.4 bits (68), Expect = 0.24
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPWV 83
I I G GKTT+ KI+E L +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAI 29
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 30.3 bits (68), Expect = 0.24
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWV 83
+I I G GKT A + E L +V
Sbjct: 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 30.8 bits (69), Expect = 0.31
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 40 KPAFSTFIAPSMVE-PFVIGICGGSASGKTTVATKIIESLN 79
+P+ P + P VI + G A GKT ++ K+ LN
Sbjct: 20 RPSLPRSCGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLN 60
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 30.2 bits (69), Expect = 0.35
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYRVHADI 98
P I + G +ASGKT +A ++ + L V L+S+DS Y+ DI
Sbjct: 10 PKAIFLMGPTASGKTALAIELRKILP---VELISVDSALIYK-GMDI 52
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 30.4 bits (68), Expect = 0.36
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 93
+I G SGK+T A + I P ++ D + +
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKN--PGFYNINRDDYRQ 39
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 30.4 bits (69), Expect = 0.36
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 56 VIGICGGSASGKTTVATKII 75
V+G+ G + GK+T A KI+
Sbjct: 105 VLGLVGTNGIGKST-ALKIL 123
Score = 27.3 bits (61), Expect = 3.8
Identities = 6/20 (30%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 56 VIGICGGSASGKTTVATKII 75
++ + G + +GKTT+ K++
Sbjct: 380 ILVMMGENGTGKTTLI-KLL 398
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 30.4 bits (69), Expect = 0.38
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 56 VIGICGGSASGKTTVATKII 75
V+GI G + +GKTT A KI+
Sbjct: 119 VVGIVGPNGTGKTT-AVKIL 137
Score = 26.1 bits (58), Expect = 8.5
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 56 VIGICGGSASGKTTVATKII 75
VIGI G + GKTT K++
Sbjct: 384 VIGIVGPNGIGKTTFV-KML 402
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 30.2 bits (69), Expect = 0.41
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYRVHADI 98
++ I G +A GKT + + + LN ++S DS YR DI
Sbjct: 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGE---VISGDSMQVYR-GMDI 45
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 30.0 bits (67), Expect = 0.42
Identities = 2/27 (7%), Positives = 6/27 (22%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPW 82
+ + + +NV
Sbjct: 121 CTAVVARGGTANAIRIAAVDNPVNVNK 147
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 30.0 bits (67), Expect = 0.44
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLN 79
+PF + I G SGKTT + N
Sbjct: 19 QPFTVLIEGNIGSGKTTYLNHFEKYKN 45
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 29.8 bits (68), Expect = 0.52
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYRVHADI 98
P I + G +A+GKT +A + ++L L+S+DS YR DI
Sbjct: 5 PPAIFLMGPTAAGKTDLAMALADALP---CELISVDSALIYR-GMDI 47
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 29.6 bits (67), Expect = 0.58
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 12 RLARRLKRDILARGRDLEGVIKQYVN--MVKPAFSTFIAPSMVEPFVIGICGGSASGKTT 69
RL + L G +++ +K+ V + K T + +P VI I G + GKTT
Sbjct: 113 RLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTT 172
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 29.7 bits (67), Expect = 0.58
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 11 VRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTF------IAPSMVEPFVIGICGGSA 64
+AR + E ++ Q ++ + P A ++ + I GG
Sbjct: 117 RTVARFFNE-VNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISV-ISGGPG 174
Query: 65 SGKTTVATKIIESL 78
+GKTT K++ +L
Sbjct: 175 TGKTTTVAKLLAAL 188
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 29.2 bits (65), Expect = 0.59
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 47 IAPSMVEPF-VIGICGGSASGKTTVATKIIESLN 79
+AP P V+ G SGK V + L
Sbjct: 3 MAPLGGAPRLVLLFSGKRKSGKDFVTEALQSRLG 36
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 29.4 bits (65), Expect = 0.64
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 40 KPAFSTFIAPSMVE-PFVIGICGGSASGKTTVATKIIESLN 79
K + +F A S I I G A+GK+T + +
Sbjct: 9 KRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCE 49
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 29.6 bits (65), Expect = 0.68
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH 95
P + G SGKT++ + I E + ++ D+F + H
Sbjct: 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVI-VIDNDTFKQQH 73
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 29.3 bits (65), Expect = 0.79
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLN 79
P + I G A GK+T + ++
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 29.0 bits (64), Expect = 0.93
Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 16/83 (19%)
Query: 25 GRDLEGVIKQYVNMVKPAFSTF--IAPSMVEPFVIGICGGSASGKTTVATKIIESL---- 78
R+ + ++Q ++ P + G +GKT K+ E
Sbjct: 21 HREQQ--LQQLDILLGNWLRNPGHHYPRAT------LLGRPGTGKTVTLRKLWELYKDKT 72
Query: 79 --NVPWVTLLSMDSFYRVHADII 99
++ +F + +I
Sbjct: 73 TARFVYINGFIYRNFTAIIGEIA 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 28.9 bits (65), Expect = 1.0
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 9 ADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTF-------IAPSMVEPFVIGICG 61
A+ +LA ++ L +G + K A + V+ + G
Sbjct: 155 AEKKLASLIRT--LLATPPADGAGNDDWAVPKKARKGLSEEQASVLDQLAGHRLVV-LTG 211
Query: 62 GSASGKTTVATKIIESL 78
G +GK+T + +
Sbjct: 212 GPGTGKSTTTKAVADLA 228
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 28.9 bits (64), Expect = 1.0
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQ 115
+ I G + SGK++ +++++ V L + + G IDLI +
Sbjct: 25 INLIIGQNGSGKSS----LLDAILVG----LYWPLRIKDIKKDEFTKVGARDTYIDLIFE 76
Query: 116 H 116
Sbjct: 77 K 77
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 28.7 bits (63), Expect = 1.2
Identities = 8/76 (10%), Positives = 25/76 (32%), Gaps = 12/76 (15%)
Query: 7 TDADVRLARRLKRDILAR----GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGG 62
+AD+ L ++ + R + + + + + + + + I
Sbjct: 2 PNADINLEESIRESLQKRELLKSQVED--FTRIFLPIYDSLMS------SQNKLFYITNA 53
Query: 63 SASGKTTVATKIIESL 78
S K + +++ L
Sbjct: 54 DDSTKFQLVNDVMDEL 69
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.5 bits (63), Expect = 1.3
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 57 IGICGGSASGKTTVATKIIESL 78
+ + G GKTT+ K E L
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVL 25
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 28.7 bits (65), Expect = 1.3
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 12 RLARRLKRDILARGRDLEGVIKQYVN--MVKPAFSTFIAPSMVEPFVIGICGGSASGKTT 69
RL + L G +++ +K+ V + K T + +P VI I G + GKTT
Sbjct: 56 RLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTT 115
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 28.4 bits (64), Expect = 1.5
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 54 PFVIGICGGSASGKTTVATKIIESL 78
G SGKT + K+I++L
Sbjct: 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 28.6 bits (64), Expect = 1.6
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLN---------VPWVTL 85
EP + I G + GK+ +A + + + V WV++
Sbjct: 146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 28.6 bits (64), Expect = 1.6
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 5 VDTDADV--RLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGG 62
V+T + L R L L G++K+ + + + PFVI + G
Sbjct: 242 VETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGV 301
Query: 63 SASGKTT 69
+ GKTT
Sbjct: 302 NGVGKTT 308
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 28.0 bits (63), Expect = 1.7
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 54 PFVIGICGGSASGKTTVATKIIESL 78
+ I G SGKT + + IE +
Sbjct: 30 TVAVNIMGAIGSGKTLLIERTIERI 54
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 28.3 bits (64), Expect = 1.7
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 12 RLARRLKRDILARGRD-----LEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASG 66
+ ++D+ ++ LE ++ P + V+ + G + G
Sbjct: 55 EVRASGRKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVG 114
Query: 67 KTT 69
KTT
Sbjct: 115 KTT 117
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer,
oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces
cerevisiae} SCOP: c.2.1.11 e.37.1.1
Length = 274
Score = 28.1 bits (62), Expect = 1.7
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 13/77 (16%)
Query: 3 VFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMV-KPAFSTFIAPSMVE---PFVIG 58
+ D + R+ + R + VN+ KP F + +E I
Sbjct: 110 IMTCIP-DHPESARIYHL--CKERFGKQQ---LVNVADKPDLCDFYFGANLEIGDRLQIL 163
Query: 59 ICGGSASGKTTVATKII 75
I S +G + ++
Sbjct: 164 I---STNGLSPRFGALV 177
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 28.3 bits (63), Expect = 1.9
Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 16/123 (13%)
Query: 4 FVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGS 63
D+ +A + + K +N P + +P + G+ G
Sbjct: 78 IRDSCWHSSVALEQSIEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKP-IAGVIGPG 136
Query: 64 ASGKTTVATKIIESLNVPWVTLLSMD----------SFYRVHADIIVPRGGENCVAIDLI 113
+S +++ ++P + + F RV VP A+ I
Sbjct: 137 SSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRV-----VPSDTLQARAMLDI 191
Query: 114 VQH 116
V+
Sbjct: 192 VKR 194
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 27.7 bits (61), Expect = 2.0
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 56 VIGICGGSASGKTTVATKIIESLN 79
V+ + G G TT + +++L
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNLR 28
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 28.0 bits (62), Expect = 2.0
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 53 EPFVIGICGGSASGKTTVATKIIES 77
+ F + + G + SGK+ +A++ +
Sbjct: 151 DSFFLFLHGRAGSGKSVIASQALSK 175
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 27.8 bits (61), Expect = 2.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 57 IGICGGSASGKTTVATKIIESLN 79
I I G +GKT++A I L+
Sbjct: 13 ILITGTPGTGKTSMAEMIAAELD 35
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 27.5 bits (62), Expect = 2.7
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP 81
+ + + +I + GG SGK T KI++
Sbjct: 2 MEEKLKKTNIIFVVGGPGSGKGTQCEKIVQKYGYT 36
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 27.6 bits (61), Expect = 3.1
Identities = 7/48 (14%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYRVHADII 99
++ + G + +GK+ ++ + + +++ D Y+ DI
Sbjct: 40 EKLLVLMGATGTGKSRLSIDLAAHFP---LEVINSDKMQVYK-GLDIT 83
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 27.2 bits (61), Expect = 3.1
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 50 SMVEPFVIGICGGSASGKTTVATKIIESLNVP 81
++ +P + I G ASGK T I +
Sbjct: 1 ALADPLKVMISGAPASGKGTQCELIKTKYQLA 32
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 27.2 bits (61), Expect = 3.1
Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 12 RLARRLKRDILARGRDLEGVIKQ-----YVNMVKPAFSTFIAPSMVE---PFVIGICGGS 63
++ ++L + G D +I++ +++ + + + + P+VI G +
Sbjct: 79 KIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFN 138
Query: 64 ASGKTT 69
SGKTT
Sbjct: 139 GSGKTT 144
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 27.6 bits (62), Expect = 3.4
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVP 81
V+GI G + +GK+T A KI+ +P
Sbjct: 49 VVGIVGPNGTGKST-AVKILAGQLIP 73
Score = 26.9 bits (60), Expect = 4.8
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 56 VIGICGGSASGKTTVATKII 75
VIGI G + GKTT K++
Sbjct: 314 VIGIVGPNGIGKTTFV-KML 332
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus
norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A*
2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 27.3 bits (60), Expect = 3.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLN 79
P +I + G A GKT ++ K+ LN
Sbjct: 39 PTLIVMVGLPARGKTYISKKLTRYLN 64
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 27.1 bits (61), Expect = 3.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 49 PSMVEPFVIGICGGSASGKTTVATKIIE 76
SM + + ICG S GK T+ K++
Sbjct: 18 GSMNNIYPLVICGPSGVGKGTLIKKLLN 45
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 27.0 bits (59), Expect = 3.9
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 56 VIGICGGSASGKTTVATKIIESLN 79
+ + G GK+TV K+ E L+
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILD 26
>3h5l_A Putative branched-chain amino acid ABC transporter; structural
genomics, PSI-2, protein structure initiative; 1.70A
{Ruegeria pomeroyi}
Length = 419
Score = 27.1 bits (60), Expect = 3.9
Identities = 3/29 (10%), Positives = 6/29 (20%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVT 84
+ G T + V +
Sbjct: 84 ASALIAGYNLENGTALHDVAADAGVIAMH 112
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY
crystallography, protein structure, ABC transport
systems, transport protein; 1.53A {Escherichia coli}
SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A
1z17_A 1z18_A 2liv_A
Length = 346
Score = 27.2 bits (61), Expect = 4.2
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84
P + +A +V + + G S T A+ I E + ++
Sbjct: 54 DPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMIS 98
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 27.0 bits (60), Expect = 5.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 59 ICGGSASGKTT 69
+ G +ASGKTT
Sbjct: 265 VVGETASGKTT 275
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 26.7 bits (58), Expect = 5.3
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79
R+ E +++ ++ PA + + + G + +GKT VA ++ L
Sbjct: 23 HREAE--LRRLAEVLAPALRGEKPSNAL------LYGLTGTGKTAVARLVLRRLE 69
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 26.9 bits (60), Expect = 5.4
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYRVHADII 99
VI I G + GK+ ++ ++ + N +++ DS Y+ II
Sbjct: 4 VIVIAGTTGVGKSQLSIQLAQKFNGE---VINSDSMQVYK-DIPII 45
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 26.3 bits (59), Expect = 5.8
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESLN 79
+ V+ + G + +GK++V+ + +L
Sbjct: 6 VSGSLVVAVDGPAGTGKSSVSRGLARALG 34
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 26.5 bits (58), Expect = 5.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 57 IGICGGSASGKTTVATKIIESLNV 80
I I G +GK+T++ +I + L
Sbjct: 3 IAIFGTVGAGKSTISAEISKKLGY 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 26.3 bits (59), Expect = 6.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 56 VIGICGGSASGKTTVA 71
VIGI G S SGK+T+
Sbjct: 37 VIGIVGRSGSGKSTLT 52
>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum.,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Corynebacterium glutamicum}
Length = 307
Score = 26.5 bits (58), Expect = 7.0
Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 19/130 (14%)
Query: 49 PSMVEPFVIGICGGSASGKTT---------VATKIIESLNVPWVTLLSMDSFYRVHADII 99
P M+EPF+ G + +A + + W+ L ++ RV
Sbjct: 178 PIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGLGNDSSYTWMKLPVVEEMERVMESTT 237
Query: 100 VP---RGGENCVAIDLIVQHIHSQLQA----GVSVDMPQGYTYEGK-RCAVSKICGVSIL 151
+P GGE D L G++V Y +G AV ++
Sbjct: 238 MPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLYPQDGDVAAAVDTA--ARLV 295
Query: 152 RAGETMEQAV 161
+
Sbjct: 296 HTDIQQFTSQ 305
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 25.9 bits (58), Expect = 7.1
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIE 76
M P + + G S +GK+T+ K+ +
Sbjct: 1 MAGPRPVVLSGPSGAGKSTLLKKLFQ 26
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap
domain, transport protein; 1.30A {Agrobacterium
tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Length = 356
Score = 26.5 bits (59), Expect = 7.5
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT 84
P +A V V + G + SG + A+++ + +T
Sbjct: 54 DPKQGISVANKFVADGVKFVVGHANSGVSIPASEVYAENGILEIT 98
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural
genomics, JOI for structural genomics, JCSG; HET: GOL;
2.40A {Thermotoga maritima} SCOP: c.1.10.1
Length = 230
Score = 26.0 bits (58), Expect = 9.1
Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 13/56 (23%)
Query: 1 MKVFVDTDADVRLARRLKRD-----------ILAR-GRDLEGVIKQYVNMVKPAFS 44
MK+F+DT A++ ++ ++++ G + + +K+ ++VK S
Sbjct: 13 MKIFLDT-ANLEEIKKGVEWGIVDGVTTNPTLISKEGAEFKQRVKEICDLVKGPVS 67
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 25.6 bits (57), Expect = 9.1
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLNVP 81
+P V+ + GG SGK T I+
Sbjct: 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWV 33
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 26.0 bits (58), Expect = 9.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 56 VIGICGGSASGKTT 69
VI I G S SGK+T
Sbjct: 34 VISIIGSSGSGKST 47
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 26.0 bits (57), Expect = 9.4
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 12 RLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVA 71
R L+ + G L+ + ++ V A P EP + + G + +GK+ +
Sbjct: 13 PFKRFLRGTRIVSGGKLKRMTREKAKQVTVAGVPM--PRDAEPRHLLVNGATGTGKSVLL 70
Query: 72 TKIIESL 78
++ +
Sbjct: 71 RELAYTG 77
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.407
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,136,444
Number of extensions: 185425
Number of successful extensions: 766
Number of sequences better than 10.0: 1
Number of HSP's gapped: 747
Number of HSP's successfully gapped: 166
Length of query: 199
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,216,824
Effective search space: 463850640
Effective search space used: 463850640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)