RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9640
(199 letters)
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 70.0 bits (171), Expect = 3e-15
Identities = 16/120 (13%), Positives = 28/120 (23%), Gaps = 43/120 (35%)
Query: 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
+K+ V ++ +++ RD RG E V + A+ I P
Sbjct: 149 LKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILR-RMHAYVHCIVPQF--------- 198
Query: 61 GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
DI R + I + I +
Sbjct: 199 ---------------------------------SQTDINFQRVPVVDTSNPFIARWIPTA 225
Score = 54.9 bits (132), Expect = 5e-10
Identities = 9/96 (9%), Positives = 24/96 (25%), Gaps = 17/96 (17%)
Query: 52 VEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRVHADIIVPRGGE---- 105
+ +I + G S +G +TV + + D+F+R + +
Sbjct: 2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAA 61
Query: 106 ----------NCVAIDLIVQHIHSQLQAGVSVDMPQ 131
+ + + +
Sbjct: 62 GDATFSHFSYEANELKELERVFR-EYGETGQGRTRT 96
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 63.1 bits (152), Expect = 4e-13
Identities = 48/121 (39%), Positives = 60/121 (49%), Gaps = 42/121 (34%)
Query: 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
MK+FVDTDAD RL+RR+ RDI RGRDLE ++ QY+ VKPAF F P
Sbjct: 133 MKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLP----------- 181
Query: 61 GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
+ +AD+I+PRG +N VAI+LIVQHI
Sbjct: 182 -------------------------------TKKYADVIIPRGADNLVAINLIVQHIQDI 210
Query: 121 L 121
L
Sbjct: 211 L 211
Score = 60.7 bits (146), Expect = 3e-12
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLNV-------PWVTLLSMDSFYRVHADIIVPRGGE 105
EPF+IG+ GG+ASGK++V KI++ L V +LS DSFYRV + +
Sbjct: 1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALK 60
Query: 106 NCVAIDLIVQHIHSQLQAGVSVDMPQGYTYE 136
D + +L ++ +G T +
Sbjct: 61 GQFNFDHPDAFDN-ELILKTLKEITEGKTVQ 90
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima
[TaxId: 2336]}
Length = 210
Score = 60.4 bits (146), Expect = 4e-12
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
V V+ P T G R I V ILRAG M + ++ + +G I I + T +
Sbjct: 54 VEVETPITKTI-GYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQA 112
Query: 185 ELYYLRLPKDIKD 197
YY +LP D
Sbjct: 113 VEYYAKLPPLNDD 125
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
[TaxId: 1394]}
Length = 208
Score = 58.8 bits (142), Expect = 1e-11
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 112 LIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRI 170
L+ I L V ++ P A K+ + ILRAG M + + ++
Sbjct: 38 LMAFEITRDLPLEEVEIETPVSKARAK-VIAGKKLGVIPILRAGIGMVDGILKLIPAAKV 96
Query: 171 GKILIQTNKATDEPELYYLRLPKDIKD 197
G I + + T +P YY++LP D+++
Sbjct: 97 GHIGLYRDPQTLKPVEYYVKLPSDVEE 123
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 57.8 bits (139), Expect = 7e-11
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 9/98 (9%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYRVHADI-----IVPRG 103
P++I I G A GK+T A + L+ V L++ D F + + + +G
Sbjct: 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKG 138
Query: 104 GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCA 141
+ +V+ + +V P
Sbjct: 139 FPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIP 176
Score = 45.1 bits (106), Expect = 2e-06
Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 29/111 (26%)
Query: 1 MKVFVDTDADVRLARRLKRDILARG---RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVI 57
++VD D+ + R + R D + Y + K
Sbjct: 217 FSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKT----------- 265
Query: 58 GICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCV 108
A + + +N + + + R A +I+ + + V
Sbjct: 266 -------------AMTLWKEINWLNLKQNILPT--RERASLILTKSANHAV 301
>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId:
5811]}
Length = 224
Score = 53.8 bits (129), Expect = 1e-09
Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
V P +Y G SKICGVSI+RAGE+ME + VC+ +RIGKILIQ ++ T EP
Sbjct: 66 KEVTTPLDVSYHGVS-FYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEP 124
Query: 185 ELYYLRLPKDIKD 197
+L Y +LP DI++
Sbjct: 125 KLIYEKLPADIRE 137
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus
[TaxId: 274]}
Length = 208
Score = 53.0 bits (127), Expect = 1e-09
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
+V+ P K + K+ V+ILRAG M + + + R+G I + + + P
Sbjct: 52 TTVETPIAPAR-VKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNP 110
Query: 185 ELYYLRLPKDIKD 197
YY++LP DI +
Sbjct: 111 VQYYIKLPPDIAE 123
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 52.9 bits (126), Expect = 3e-09
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESL-----NVPWVTLLSMDSFYRVHAD 97
P I G SGK+ + +I L + S+D FY H D
Sbjct: 26 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHED 75
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 49.4 bits (116), Expect = 4e-08
Identities = 15/83 (18%), Positives = 29/83 (34%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLI 113
V+GI G S SGKTT+A ++ ++L +++ + G
Sbjct: 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYY 81
Query: 114 VQHIHSQLQAGVSVDMPQGYTYE 136
+Q L + + +
Sbjct: 82 LQWDVEWLTHQLFRQLKASHQLT 104
Score = 33.6 bits (75), Expect = 0.008
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPS 50
V++D ++R AR + ++++ I +Y + + P
Sbjct: 146 FVVYLDCPREIRFARENDQ----VKQNIQKFINRYWK-AEDYYLETEEPI 190
>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 215
Score = 49.2 bits (117), Expect = 4e-08
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 125 VSVDMPQGYTYEGKRCA-VSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATD- 182
V V+ P G +G ++ I ++ILRA + + + R G I +
Sbjct: 51 VEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGK 110
Query: 183 ------EPELYYLRLPKDI 195
+ +YY ++P
Sbjct: 111 EVPKDMDVYIYYKKIPDIR 129
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 43.5 bits (101), Expect = 3e-06
Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 1/119 (0%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE-NCVAID 111
+PF + I G SGKTT + N + ++ + V+ ++ +
Sbjct: 8 QPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAM 67
Query: 112 LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRI 170
++ + + + + ++ C V +R ++EQ +++ ++
Sbjct: 68 PFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYK 126
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 43.0 bits (100), Expect = 4e-06
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLNVPWV 83
P +IGI G SGK+TVA ++ S P +
Sbjct: 2 HPIIIGITGNIGSGKSTVA-ALLRSWGYPVL 31
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus
influenzae [TaxId: 727]}
Length = 205
Score = 40.2 bits (93), Expect = 4e-05
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 93
+++G+ GG SGKTT+A + L VP V D R
Sbjct: 2 TYIVGLTGGIGSGKTTIA-NLFTDLGVPLV---DADVVAR 37
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 39.4 bits (91), Expect = 9e-05
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 50 SMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83
S+ +++ + GG SGK+TVA L + +
Sbjct: 1 SL--RYIVALTGGIGSGKSTVA-NAFADLGINVI 31
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 38.0 bits (87), Expect = 3e-04
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 55 FVIGICGGSASGKTTVATKIIESLNVPWV 83
+I + G SGK T A I+ + +
Sbjct: 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKY 30
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 37.6 bits (86), Expect = 4e-04
Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 6/140 (4%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSFYRVHADIIVPRGGENCVAID 111
P +I + G A GKT ++ K+ LN ++ + R + E + +
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKT--YKSFEFFLPDN 59
Query: 112 LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIG 171
I Q D+ + + EG AV + R M +
Sbjct: 60 EEGLKIRKQCALAALNDVRKFLSEEGGHVAV--FDATNTTRERRAMIFNFGEQNGYKTFF 117
Query: 172 KILIQTNKATDEPELYYLRL 191
I + + ++L
Sbjct: 118 VESICVDPEVIAANIVQVKL 137
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 36.4 bits (83), Expect = 8e-04
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP-RGGENCVAID 111
P V+ G +GK+T + + S V ++ S+ R + R G+ V +
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDN 72
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 36.4 bits (83), Expect = 0.001
Identities = 26/139 (18%), Positives = 39/139 (28%), Gaps = 3/139 (2%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDL 112
+P + I G ASGK T I + + S R G ++
Sbjct: 2 DPLKVMISGAPASGKGTQCELIKTKYQLAHI---SAGDLLRAEIAAGSENGKRAKEFMEK 58
Query: 113 IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGK 172
+ V + Q E S A ET+E +
Sbjct: 59 GQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDE 118
Query: 173 ILIQTNKATDEPELYYLRL 191
+L++ D E LRL
Sbjct: 119 LLVERVVFDDTEEKVKLRL 137
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 36.5 bits (83), Expect = 0.001
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG 103
I I G ++SGK+TVA I + L + YR + +
Sbjct: 3 TIQIAIDGPASSGKSTVAKIIAKDFGFT---YLDTGAMYRAATYMALKNQ 49
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 35.8 bits (81), Expect = 0.001
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP 101
+I + GGS++GK+ + + L PW+ +DS +
Sbjct: 5 MIILNGGSSAGKSGIVRCLQSVLPEPWL-AFGVDSLIEAMPLKMQS 49
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 35.8 bits (81), Expect = 0.002
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQ 115
VI I G S +GK T+ + E+L LL + YRV A + + L+
Sbjct: 5 VITIDGPSGAGKGTLCKAMAEALQWH---LLDSGAIYRVLALAALHHHVDVASEDALVPL 61
Query: 116 HIH 118
H
Sbjct: 62 ASH 64
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 35.3 bits (80), Expect = 0.002
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 93
++ + G SGK+T+A + VP V D +
Sbjct: 6 ILLLSGHPGSGKSTIAEALANLPGVPKV-HFHSDDLWG 42
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 35.3 bits (80), Expect = 0.002
Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 5/137 (3%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLI 113
P V+ + GG +GK T +I+E LS R + P + I
Sbjct: 1 PLVVFVLGGPGAGKGTQCARIVEKYGYTH---LSAGELLR--DERKNPDSQYGELIEKYI 55
Query: 114 VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKI 173
+ ++ +S+ + +K R + ++ + + +
Sbjct: 56 KEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFV 115
Query: 174 LIQTNKATDEPELYYLR 190
L E R
Sbjct: 116 LFFDCNNEICIERCLER 132
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 34.6 bits (78), Expect = 0.003
Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 15/165 (9%)
Query: 41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIV 100
PAFS VI + GG +GK T K+++ + + S R
Sbjct: 1 PAFSPDQVS------VIFVLGGPGAGKGTQCEKLVKDYSFVHL---SAGDLLRAEQGRAG 51
Query: 101 PRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRA------G 154
+ GE Q + ++ + + K + + +A
Sbjct: 52 SQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI 111
Query: 155 ETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK 199
+ + C + + + L++ K + + + K +K
Sbjct: 112 VESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFK 156
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 34.6 bits (78), Expect = 0.004
Identities = 13/122 (10%), Positives = 25/122 (20%), Gaps = 3/122 (2%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLI 113
P V+ + GG SGK T I+ + S R G I
Sbjct: 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHL---SAGDLLRQEQQSGSKDGEMIATMIKNG 62
Query: 114 VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKI 173
+ + + + + +
Sbjct: 63 EIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEE 122
Query: 174 LI 175
++
Sbjct: 123 VM 124
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 34.3 bits (77), Expect = 0.005
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 10/45 (22%)
Query: 39 VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83
+P F+ +A I GG +SGK+ + K+ N
Sbjct: 2 ARPFFAKTVA----------ILGGESSGKSVLVNKLAAVFNTTSA 36
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 34.2 bits (77), Expect = 0.005
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPW--VTLLSMDSFYRVHADIIVPRGGENCVAIDLI 113
V+ + G G TT + +++L ++S S A + +
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 62
Query: 114 VQHIHSQLQAGVSVD 128
Q AG +
Sbjct: 63 ETQKRIQKMAGRKIA 77
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 33.8 bits (76), Expect = 0.007
Identities = 19/143 (13%), Positives = 35/143 (24%), Gaps = 3/143 (2%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAI 110
M EP + G G TTV ++ +L +V V
Sbjct: 1 MTEPIFM--VGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFR 58
Query: 111 DLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRI 170
+ + + V G + + G + E A+
Sbjct: 59 RRESEALQAVATPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAH 118
Query: 171 GKILIQTNKATDEPE-LYYLRLP 192
+ + +E E + R
Sbjct: 119 QRPTLTGRPIAEEMEAVLREREA 141
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 33.4 bits (75), Expect = 0.008
Identities = 11/78 (14%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAI 110
M+ P ++ + G GKTT+ ++ + ++ + + +++
Sbjct: 2 MLLPNIL-LTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDED 60
Query: 111 DLIVQHIHSQLQAGVSVD 128
++ + + + GV VD
Sbjct: 61 RVVDELDNQMREGGVIVD 78
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 33.2 bits (74), Expect = 0.010
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 1/67 (1%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQ 115
+I G SGK+T A + I + + D + A ++
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTG 62
Query: 116 HIHSQLQ 122
+
Sbjct: 63 MQFDTAK 69
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 33.1 bits (74), Expect = 0.011
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 49 PSMVEPFVIGICGGSASGKTTVATKIIESLN 79
P + F I + G SGK +A + +LN
Sbjct: 1 PRATQGFTIFLTGYMNSGKDAIARALQVTLN 31
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 32.6 bits (73), Expect = 0.013
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 56 VIGICGGSASGKTTVATKIIESLN 79
++ S +GKTT+ K+I +L
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALC 27
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 32.7 bits (73), Expect = 0.014
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP 101
+ I G + GK+T ++ L+ + D + P
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAY--IEGDIINHMVVGGYRP 47
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 32.6 bits (73), Expect = 0.017
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQH 116
+ + G +GK T A K+ E L +P + S +R + + G E +D
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQI---STGELFRRNIEEGTKLGVEAKRYLDAGDLV 59
Query: 117 IH 118
Sbjct: 60 PS 61
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 32.3 bits (72), Expect = 0.019
Identities = 10/82 (12%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVHADIIVPRGGENCVAIDLI 113
+ + G S SGK+ VA+++ L+ L A + + +
Sbjct: 8 IYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQAL 67
Query: 114 VQHIHSQLQAGVSVDMPQGYTY 135
+ + +
Sbjct: 68 NDAAFAMQRTNKVSLIVCSALK 89
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 32.1 bits (72), Expect = 0.025
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 56 VIGICGGSASGKTTVATKIIESL 78
V + G SGKTT+ K + +
Sbjct: 3 VWQVVGYKHSGKTTLMEKWVAAA 25
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 31.8 bits (71), Expect = 0.035
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG 103
+ + G +GK T A KI+ + +P + S +R P G
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHI---STGDMFRAAMKEGTPLG 46
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 31.5 bits (70), Expect = 0.038
Identities = 15/128 (11%), Positives = 40/128 (31%), Gaps = 4/128 (3%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQH 116
+ + G S +GK+T+ K+ + + ++ + G++ + +
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHS----SIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQ 58
Query: 117 IHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQ 176
+ G Y + AV + ++ + + Q V + K +
Sbjct: 59 RDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFV 118
Query: 177 TNKATDEP 184
+ D
Sbjct: 119 QPPSLDVL 126
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 31.5 bits (70), Expect = 0.039
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGEN 106
+ + + +I + GG SGK T KI++ + S R RG
Sbjct: 1 MEEKLKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHL---STGDLLRAEVSSGSARGKML 57
Query: 107 CVAIDLIVQHIH 118
++
Sbjct: 58 SEIMEKGQLVPL 69
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 31.2 bits (69), Expect = 0.054
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPW 82
+ + G S +GKTTV+ + E L
Sbjct: 19 GCTVWLTGLSGAGKTTVSMALEEYLVCHG 47
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 30.9 bits (68), Expect = 0.064
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPWVTLLSM 88
I + G +GK+T+ ++ + LN+ +
Sbjct: 5 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE 36
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 30.6 bits (68), Expect = 0.078
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQH 116
I G SGK TV+++I + + + S R + G ID
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHL---SSGDLLRDNMLRGTEIGVLAKTFIDQGKLI 65
Query: 117 IHSQLQAGVSVDMPQGYTY 135
+ V ++ Y
Sbjct: 66 PDDVMTRLVLHELKNLTQY 84
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 30.2 bits (67), Expect = 0.090
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE 105
I + G +GK T A +I+E P + S +R G +
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPHI---STGDMFRAAIQEGTELGVK 48
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 30.6 bits (68), Expect = 0.094
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 53 EPFVIGICGGSASGKTTVATKIIESLNVPW 82
I + G SASGK+T+A ++ L
Sbjct: 23 RGLTIWLTGLSASGKSTLAVELEHQLVRDR 52
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 29.9 bits (66), Expect = 0.12
Identities = 9/76 (11%), Positives = 22/76 (28%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQH 116
I G SGK+T+A + + L++ ++ + + + +
Sbjct: 3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKM 62
Query: 117 IHSQLQAGVSVDMPQG 132
+ G
Sbjct: 63 ADFFSSCEKACIATGG 78
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 30.0 bits (66), Expect = 0.14
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPWV 83
I I G +GKT++A I L+
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELDGFQH 34
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 29.9 bits (66), Expect = 0.16
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD 97
P + G SGKT++ + I E + + D+F + H +
Sbjct: 32 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIV-IDNDTFKQQHPN 74
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 29.6 bits (65), Expect = 0.18
Identities = 19/137 (13%), Positives = 36/137 (26%), Gaps = 4/137 (2%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPWVTLL-SMDSFYRVHADIIVPRGGENCVAIDLIVQ 115
+ G SGK+T+ ++ ++L V + +++ I GE
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDV 63
Query: 116 HIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILI 175
+ + + G A V L +L
Sbjct: 64 VRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRP---LLA 120
Query: 176 QTNKATDEPELYYLRLP 192
++A L R P
Sbjct: 121 GPDRAEKYRALMAKRAP 137
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 29.5 bits (65), Expect = 0.18
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 59 ICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAID 111
+ G +GK T A K+ ++ V + + R G + +D
Sbjct: 8 LLGPPGAGKGTQAPKLAKNFCVCHL---ATGDMLRAMVASGSELGKKLKATMD 57
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 29.5 bits (65), Expect = 0.19
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPWVT 84
+ + G +GK T A + E + +
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHLA 32
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 29.5 bits (65), Expect = 0.25
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSM--DSFYRVHADIIVPR 102
+ P +GI G GK+T + L + + D I+
Sbjct: 44 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGD 101
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 28.7 bits (63), Expect = 0.33
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPWVT 84
I + G +GK T A I+E +P ++
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQIS 30
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 28.8 bits (63), Expect = 0.35
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 56 VIGICGGSASGKTTVATKIIESLN 79
+ + G GK+TV K+ E L+
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILD 26
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 28.5 bits (63), Expect = 0.39
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 54 PFVIGICGGSASGKTTVATKI 74
PFVI + G + +GKTT K+
Sbjct: 11 PFVIMVVGVNGTGKTTSCGKL 31
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 28.6 bits (63), Expect = 0.43
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 54 PFVIGICGGSASGKTTVATKI 74
P+VI + G +GK T A K+
Sbjct: 12 PYVIMLVGVQGTGKATTAGKL 32
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 28.5 bits (63), Expect = 0.44
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 54 PFVIGICGGSASGKTTVATKI 74
PFVI + G + GKTT K+
Sbjct: 9 PFVILMVGVNGVGKTTTIGKL 29
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 28.4 bits (63), Expect = 0.59
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 51 MVEPFVIGICGGSASGKTTVATKIIESLN 79
MV I + G GK+T + + +
Sbjct: 3 MVTIVRIYLDGVYGIGKSTTGRVMASAAS 31
Score = 28.0 bits (62), Expect = 0.67
Identities = 5/45 (11%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 3 VFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFI 47
V + + + R + R R E + + ++ + +
Sbjct: 161 VVTTLNVEEHIRR-----LRTRARIGEQIDITLIATLRNVYFMLV 200
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 27.7 bits (60), Expect = 0.75
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 56 VIGICGGSASGKTTVATKIIESL 78
+ + G GKTT+ K E L
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVL 25
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 27.6 bits (60), Expect = 0.80
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 9/81 (11%)
Query: 57 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQH 116
I I G S +GK+T+ K+ + +S + PR GE D
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT--------PRAGE-VNGKDYNFVS 54
Query: 117 IHSQLQAGVSVDMPQGYTYEG 137
+ + + + + G
Sbjct: 55 VDEFKSMIKNNEFIEWAQFSG 75
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 28.2 bits (62), Expect = 0.80
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 52 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG 103
V P I + G + GKT +A ++ + N P F +V A G
Sbjct: 47 VTPKNILMIGPTGVGKTEIARRLAKLANAP---------FIKVEATKFTEVG 89
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 27.3 bits (59), Expect = 0.95
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 57 IGICGGSASGKTTVATKIIESLN 79
I I G +GK T+ K+ +
Sbjct: 3 IAIEGVDGAGKRTLVEKLSGAFR 25
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 27.4 bits (60), Expect = 0.99
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 54 PFVIGICGGSASGKTTVATKI 74
V+ + G + GKTT K+
Sbjct: 6 GRVVLVVGVNGVGKTTTIAKL 26
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 27.3 bits (59), Expect = 1.2
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 54 PFVIGICGGSASGKTTVATKIIESLN 79
P + I G A GK+T + ++
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 27.4 bits (60), Expect = 1.2
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 1/90 (1%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQ 115
GI G S +GKTT +II L+VP L D ++ + + +
Sbjct: 33 RFGILGPSGAGKTTFM-RIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW 91
Query: 116 HIHSQLQAGVSVDMPQGYTYEGKRCAVSKI 145
++ L A ++ P K ++
Sbjct: 92 ALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 27.1 bits (59), Expect = 1.4
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW--VTLLSMDSFYRVHADIIVP--- 101
I P +G+ G +GK+T L V ++++D V I+
Sbjct: 47 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKT 106
Query: 102 RGGENCVAIDLIVQHIHSQLQAGVSVDMPQ 131
R + A ++ + S G + +
Sbjct: 107 RMNDLARAEAAFIRPVPSSGHLGGASQRAR 136
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 27.0 bits (59), Expect = 1.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 49 PSMVEPFVIGICGGSASGKTTVATKI 74
P + + + + G SGKTT A K+
Sbjct: 5 PVLKDRNLWFLVGLQGSGKTTTAAKL 30
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 27.0 bits (58), Expect = 1.5
Identities = 16/99 (16%), Positives = 31/99 (31%)
Query: 26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL 85
L+ + + N K +F + G GKTT A + + L +
Sbjct: 24 MKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 83
Query: 86 LSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQLQAG 124
+ D + + V +N + + +Q G
Sbjct: 84 NASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNG 122
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 477
Score = 27.2 bits (59), Expect = 1.6
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 16/121 (13%)
Query: 6 DTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSAS 65
D+ +A + + K +N P T + P + + G+ G +S
Sbjct: 72 DSCWHSSVALEQSIEFIRDSLISIRDEKDGLNRCLPDGQT-LPPGRTKKPIAGVIGPGSS 130
Query: 66 GKTTVATKIIESLNVPWVTLLSMD----------SFYRVHADIIVPRGGENCVAIDLIVQ 115
+++ ++P + + F RV VP A+ IV+
Sbjct: 131 SVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRV-----VPSDTLQARAMLDIVK 185
Query: 116 H 116
Sbjct: 186 R 186
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 26.8 bits (59), Expect = 1.7
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVP 81
+I G S GK+T+ ++E P
Sbjct: 30 IIAFAGPSGGGKSTIF-SLLERFYQP 54
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 27.0 bits (58), Expect = 1.7
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN 79
G + + + S V + G G GKTT+A ++ ++
Sbjct: 20 VRRGEAEALARIYLNRLLSGAGLSDV-NMIYGSIGRVGIGKTTLAKFTVKRVS 71
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 26.5 bits (57), Expect = 1.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 57 IGICGGSASGKTTVATKIIESLN 79
I + G +GK+T + K++E+L
Sbjct: 6 IVLEGVDRAGKSTQSRKLVEALC 28
>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia
coli [TaxId: 562]}
Length = 368
Score = 26.7 bits (58), Expect = 2.0
Identities = 8/22 (36%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 14 ARRLKRDILARGRDLEGVIKQY 35
A+ + RD +A G L G++K++
Sbjct: 343 AQLM-RDFVADGGSLIGLVKKH 363
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 26.4 bits (58), Expect = 2.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 56 VIGICGGSASGKTTVA 71
VIGI G S SGK+T+
Sbjct: 31 VIGIVGRSGSGKSTLT 46
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 26.1 bits (56), Expect = 2.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 56 VIGICGGSASGKTTVATKIIESL 78
V+ + G SA GK+TV + E +
Sbjct: 4 VVVLSGPSAVGKSTVVRCLRERI 26
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 26.0 bits (56), Expect = 2.8
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 57 IGICGGSASGKTTVATKIIESLN 79
I I G +GKTT + + L
Sbjct: 6 ILIEGLDRTGKTTQCNILYKKLQ 28
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 26.0 bits (57), Expect = 2.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 56 VIGICGGSASGKTTVA 71
V + G + SGK+TVA
Sbjct: 42 VTALVGPNGSGKSTVA 57
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 26.0 bits (57), Expect = 3.2
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 92
+ + G S SGK+T+A +I + MD
Sbjct: 43 TVALVGRSGSGKSTIA-SLITRFYDIDEGHILMDGHD 78
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 25.8 bits (55), Expect = 3.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 50 SMVEPFVIGICGGSASGKTTVATKIIES 77
SM E + + + GG GK+ + + I+S
Sbjct: 1 SMQEKYRLVVVGGGGVGKSALTIQFIQS 28
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
{Caenorhabditis elegans [TaxId: 6239]}
Length = 277
Score = 25.9 bits (56), Expect = 3.3
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 11/58 (18%)
Query: 20 DILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES 77
R ++ VIK+ M ++ F + + G + SGK+ +A++ +
Sbjct: 21 TCYIREYHVDRVIKKLDEM-----------CDLDSFFLFLHGRAGSGKSVIASQALSK 67
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli
[TaxId: 562]}
Length = 210
Score = 25.7 bits (55), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 57 IGICGGSASGKTTVATKIIESLN 79
I I G +GKTT ++E+L
Sbjct: 5 IVIEGLEGAGKTTARNVVVETLE 27
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 25.9 bits (57), Expect = 3.6
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 56 VIGICGGSASGKTTVA 71
+ G S GK+T+
Sbjct: 46 TVAFVGMSGGGKSTLI 61
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 26.0 bits (56), Expect = 3.8
Identities = 3/22 (13%), Positives = 12/22 (54%)
Query: 57 IGICGGSASGKTTVATKIIESL 78
+ + G + +GK+ + ++ +
Sbjct: 53 LLVNGATGTGKSVLLRELAYTG 74
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 25.8 bits (56), Expect = 3.9
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPW 82
I G + +GKT ++I +VP
Sbjct: 28 YFVILGPTGAGKTLFL-ELIAGFHVPD 53
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 25.7 bits (56), Expect = 4.2
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 49 PSMVEPFVIGICGGSASGKTTVATKIIESLN 79
P+++ + I G GKTT ++ +
Sbjct: 2 PTLL---RVYIDGPHGMGKTTTTQLLVALGS 29
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 25.5 bits (56), Expect = 4.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 57 IGICGGSASGKTTVATKII 75
IG+ GG+ GKT + ++I
Sbjct: 71 IGLFGGAGVGKTVLIMELI 89
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 25.6 bits (56), Expect = 4.5
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVP 81
VI I G S SGK+T + I L P
Sbjct: 30 VISIIGSSGSGKSTFL-RCINFLEKP 54
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 25.6 bits (56), Expect = 4.7
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 56 VIGICGGSASGKTTVA 71
++ I G + SGKT++
Sbjct: 64 MLAITGSTGSGKTSLL 79
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 25.2 bits (54), Expect = 5.2
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 36 VNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL 78
VN ++ AFS + ++ I + GG ++GK++V +E+
Sbjct: 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSV----LENF 46
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 25.3 bits (55), Expect = 5.5
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPW 82
+ + G S GKTT ++I L P
Sbjct: 31 FMILLGPSGCGKTTTL-RMIAGLEEPS 56
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 25.1 bits (55), Expect = 5.7
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVP 81
+ + G S GKTT ++I L P
Sbjct: 34 FLVLLGPSGCGKTTTL-RMIAGLEEP 58
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 24.8 bits (53), Expect = 5.8
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 49 PSMVEPFVIGI-CGGSASGKTTVATKII 75
P++ + F + + SGK+T
Sbjct: 2 PAVPQSFQVAHLHAPTGSGKSTKVPAAY 29
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 24.9 bits (54), Expect = 6.0
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPW 82
+ G S GK+T+ ++I L
Sbjct: 28 FVVFVGPSGCGKSTLL-RMIAGLETIT 53
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 25.4 bits (55), Expect = 6.2
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 57 IGICGGSASGKTTVATKIIESLN 79
I + G GKTT A + +
Sbjct: 8 IYLDGAYGIGKTTAAEEFLHHFA 30
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 25.0 bits (53), Expect = 6.3
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 57 IGICGGSASGKTTVATKIIESLN 79
I I G A+GK+T + +
Sbjct: 5 ISIEGNIAAGKSTFVNILKQLCE 27
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 24.8 bits (53), Expect = 6.6
Identities = 9/133 (6%), Positives = 33/133 (24%), Gaps = 13/133 (9%)
Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQ 115
+ + S +GK+++ ++++ + +
Sbjct: 4 LYIVSAPSGAGKSSLIQALLKTQP--------LYDTQVSVSHTTRQPRPGEVHGEHYFFV 55
Query: 116 HIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETM-----EQAVHDVCKDIRI 170
+ + + G S+ +L G + Q + + +
Sbjct: 56 NHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPH 115
Query: 171 GKILIQTNKATDE 183
+ + + E
Sbjct: 116 ARSIFILPPSKIE 128
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 25.0 bits (53), Expect = 6.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 57 IGICGGSASGKTTVATKIIESLNVP 81
I I G GKTT+ KI+E L
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKR 27
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 24.7 bits (52), Expect = 7.6
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 52 VEPFVIGICGGSASGKTTVATKIIESL 78
+ + I G + SGK+++ I+ L
Sbjct: 21 FKEGINLIIGQNGSGKSSLLDAILVGL 47
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 24.7 bits (52), Expect = 7.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 59 ICGGSASGKTTVATKIIESL 78
+ G+ SGKT V T I L
Sbjct: 19 VLAGAGSGKTRVITNKIAHL 38
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 24.4 bits (52), Expect = 8.3
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 57 IGICGGSASGKTTVATKIIESL 78
+ + G G+ + +I
Sbjct: 6 LVLLGAHGVGRRHIKNTLITKH 27
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 24.5 bits (52), Expect = 9.3
Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 7/123 (5%)
Query: 56 VIGICGGSASGKTTVATKIIESL------NVPWVTLLSMDSFYRVHADIIVPRGGENCVA 109
+I G + +GKT + ++ +E+ + + S R +
Sbjct: 28 IILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQN 87
Query: 110 IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIR 169
+ IV + + + + K A I +S L G + V
Sbjct: 88 LLKIVCAYPESAGLEDHLQIIKSEINDFK-PARIAIDSLSALARGVSNNAFRQFVIGVTG 146
Query: 170 IGK 172
K
Sbjct: 147 YAK 149
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.407
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 751,043
Number of extensions: 33912
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 132
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (24.0 bits)