Query psy9641
Match_columns 145
No_of_seqs 122 out of 1130
Neff 5.4
Searched_HMMs 46136
Date Sat Aug 17 00:54:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0362 Gnd 6-phosphogluconate 100.0 4.7E-55 1E-59 378.4 11.3 141 1-141 215-356 (473)
2 PF00393 6PGD: 6-phosphoglucon 100.0 5.2E-53 1.1E-57 353.9 10.0 141 1-141 37-179 (291)
3 KOG2653|consensus 100.0 4.8E-53 1E-57 362.9 10.0 141 1-141 219-361 (487)
4 PTZ00142 6-phosphogluconate de 100.0 2.1E-45 4.4E-50 324.2 10.3 141 1-141 214-358 (470)
5 PRK09287 6-phosphogluconate de 100.0 2E-44 4.3E-49 317.2 10.7 141 1-141 203-344 (459)
6 TIGR00873 gnd 6-phosphoglucona 100.0 3.5E-44 7.6E-49 316.0 10.4 141 1-141 211-352 (467)
7 PLN02350 phosphogluconate dehy 100.0 3.8E-38 8.3E-43 279.6 10.3 141 1-141 220-367 (493)
8 COG1023 Gnd Predicted 6-phosph 99.8 1.9E-19 4.2E-24 149.2 5.1 75 2-81 203-278 (300)
9 TIGR00872 gnd_rel 6-phosphoglu 99.4 7.5E-13 1.6E-17 110.1 5.7 73 2-79 202-275 (298)
10 PLN02350 phosphogluconate dehy 98.6 6.8E-08 1.5E-12 86.7 5.1 76 1-78 365-444 (493)
11 PRK09287 6-phosphogluconate de 98.6 7.7E-08 1.7E-12 85.5 5.1 76 1-78 342-421 (459)
12 TIGR00873 gnd 6-phosphoglucona 98.5 2.9E-07 6.2E-12 82.0 6.3 77 1-78 350-432 (467)
13 PTZ00142 6-phosphogluconate de 98.4 2.6E-07 5.6E-12 82.4 4.9 75 1-77 356-434 (470)
14 PRK09599 6-phosphogluconate de 98.2 1.8E-06 3.8E-11 71.8 4.9 72 2-78 204-276 (301)
15 PRK12490 6-phosphogluconate de 97.9 2.4E-05 5.2E-10 65.1 5.7 73 2-79 203-276 (299)
16 PF00393 6PGD: 6-phosphoglucon 97.7 3.1E-05 6.6E-10 65.8 2.9 73 2-76 178-254 (291)
17 TIGR00872 gnd_rel 6-phosphoglu 96.0 0.0051 1.1E-07 51.2 2.9 36 100-139 166-201 (298)
18 PRK09599 6-phosphogluconate de 92.2 0.13 2.9E-06 42.7 3.0 36 100-139 168-203 (301)
19 KOG2653|consensus 88.5 0.63 1.4E-05 41.6 4.1 78 2-82 360-441 (487)
20 COG0362 Gnd 6-phosphogluconate 84.4 1.5 3.3E-05 39.5 4.4 76 2-82 355-436 (473)
21 COG1023 Gnd Predicted 6-phosph 68.0 4.1 8.9E-05 34.8 2.3 31 100-130 167-197 (300)
22 PF12639 Colicin-DNase: DNase/ 45.5 5.2 0.00011 29.3 -0.7 47 42-90 8-55 (110)
23 PF10281 Ish1: Putative stress 43.3 5 0.00011 23.7 -0.9 15 5-19 1-15 (38)
24 PRK12490 6-phosphogluconate de 34.5 39 0.00084 28.0 2.8 36 100-139 167-202 (299)
25 PF14108 DUF4281: Domain of un 31.8 53 0.0011 24.5 2.9 23 48-70 93-115 (129)
26 COG3651 Uncharacterized protei 31.3 37 0.00079 25.4 1.9 33 44-76 75-112 (125)
27 KOG2058|consensus 28.4 53 0.0011 29.7 2.8 28 101-128 220-251 (436)
28 COG0374 HyaB Ni,Fe-hydrogenase 23.3 69 0.0015 29.9 2.6 51 22-76 41-94 (545)
29 PRK00124 hypothetical protein; 21.8 65 0.0014 25.0 1.8 46 64-112 100-145 (151)
No 1
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-55 Score=378.40 Aligned_cols=141 Identities=50% Similarity=0.715 Sum_probs=134.0
Q ss_pred ChHHHHhhccCcchhHHHHHHHHHhhccCCC-CcccccccccccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhhccch
Q psy9641 1 MSAVFEDWNKGELDSFLIEITKDILKFKDTD-GAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLF 79 (145)
Q Consensus 1 ia~vf~~Wn~G~l~SyLleIt~~il~~kD~~-g~~lld~I~D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S~~k 79 (145)
|++||++||+|+|+|||+|||++||++||++ |+||||+|+|+|+|||||+||+++|+++|||+|.|++|||+|++|+.|
T Consensus 215 i~~vF~~WN~geL~SYLIeIT~~IL~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K 294 (473)
T COG0362 215 IAEVFEEWNKGELDSYLIEITADILRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLK 294 (473)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhH
Confidence 6899999999999999999999999999988 459999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHHhhhhccccCCCCC
Q psy9641 80 DERQKASQVLQGPNPTYKGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFAS 141 (145)
Q Consensus 80 ~~R~~as~~~~~~~~~~~~~~~~~~~~l~~Al~~s~i~syaQGf~Ll~~As~~~~W~~~~~~ 141 (145)
++|+++++.|++|.....+|+++|++++|+|||+|||+||||||+||++||++|||++++.+
T Consensus 295 ~eR~~Ask~l~~~~~~~~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~ 356 (473)
T COG0362 295 DERVAASKVLAGPKLGEPGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGE 356 (473)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999885444678999999999999999999999999999999999999999743
No 2
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=100.00 E-value=5.2e-53 Score=353.93 Aligned_cols=141 Identities=42% Similarity=0.623 Sum_probs=117.1
Q ss_pred ChHHHHhhccCcchhHHHHHHHHHhhccCCCCcccccccccccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhhccchH
Q psy9641 1 MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFD 80 (145)
Q Consensus 1 ia~vf~~Wn~G~l~SyLleIt~~il~~kD~~g~~lld~I~D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S~~k~ 80 (145)
|++||++||+|+|+|||||||++||++||.+|+||||+|+|+++|||||+||++||+++|||+|+|++||++|++|+.|+
T Consensus 37 i~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~I~d~a~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~ 116 (291)
T PF00393_consen 37 IADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDKILDKAGQKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKE 116 (291)
T ss_dssp HHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGGB-S----BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhhhCCccCCCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCc
Confidence 57899999999999999999999999999779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCC--CCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHHhhhhccccCCCCC
Q psy9641 81 ERQKASQVLQGPN--PTYKGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFAS 141 (145)
Q Consensus 81 ~R~~as~~~~~~~--~~~~~~~~~~~~~l~~Al~~s~i~syaQGf~Ll~~As~~~~W~~~~~~ 141 (145)
+|+++++.+++|. .....+++.|+++||+|||||+|+||+|||+||++||++|||++|+..
T Consensus 117 ~R~~~s~~~~~~~~~~~~~~~~~~~i~~l~~Aly~~~i~~yaQGf~ll~~as~~~~W~lnl~~ 179 (291)
T PF00393_consen 117 ERVAASKILPGPQKFDESKEDKEEFIEDLRKALYAAKIISYAQGFALLRAASKEYGWDLNLSE 179 (291)
T ss_dssp HHHHHHHHSTT-S-STTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----HHH
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHH
Confidence 9999999998863 334457889999999999999999999999999999999999999853
No 3
>KOG2653|consensus
Probab=100.00 E-value=4.8e-53 Score=362.92 Aligned_cols=141 Identities=53% Similarity=0.799 Sum_probs=133.4
Q ss_pred ChHHHHhhccCcchhHHHHHHHHHhhccCCCCcccccccccccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhhccchH
Q psy9641 1 MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFD 80 (145)
Q Consensus 1 ia~vf~~Wn~G~l~SyLleIt~~il~~kD~~g~~lld~I~D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S~~k~ 80 (145)
|+++|++||+|+|+|||+|||++||+.||++|+||||+|+|.+||||||+||++.|+|+|+|+|+|.+|||+|++|+.|+
T Consensus 219 ia~vF~~WN~geleSfLieIT~dIlk~~d~~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKd 298 (487)
T KOG2653|consen 219 IAEVFDDWNKGELESFLIEITADILKFKDEDGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKD 298 (487)
T ss_pred HHHHHHhhcccchhHHHHHHhHHHhheeccCCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCC--CCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHHhhhhccccCCCCC
Q psy9641 81 ERQKASQVLQGPN--PTYKGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFAS 141 (145)
Q Consensus 81 ~R~~as~~~~~~~--~~~~~~~~~~~~~l~~Al~~s~i~syaQGf~Ll~~As~~~~W~~~~~~ 141 (145)
||+.+|++|++|. .....++++|++|+|+|||+|||+||+|||+||++|+++|||.+|+..
T Consensus 299 eR~~ask~L~gp~~~~~~~~~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~ 361 (487)
T KOG2653|consen 299 ERVRASKVLKGPGVKRDMGDDKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGG 361 (487)
T ss_pred HHHHHHHhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 9999999999883 233336889999999999999999999999999999999999999853
No 4
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-45 Score=324.16 Aligned_cols=141 Identities=39% Similarity=0.552 Sum_probs=130.2
Q ss_pred ChHHHHhhccCcchhHHHHHHHHHhhccCCCC-cccccccccccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhhccch
Q psy9641 1 MSAVFEDWNKGELDSFLIEITKDILKFKDTDG-APLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLF 79 (145)
Q Consensus 1 ia~vf~~Wn~G~l~SyLleIt~~il~~kD~~g-~~lld~I~D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S~~k 79 (145)
+.++|+.||+|+++|||+|||++||++||++| +|+||+|+|+++|||||+||++||+++|||+|+|++||++|++|.+|
T Consensus 214 l~~v~~~w~~g~~~S~l~ei~~~~~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k 293 (470)
T PTZ00142 214 LSEVFNKWNEGILNSYLIEITAKILAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALK 293 (470)
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHhhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhH
Confidence 36799999999999999999999999998775 79999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCC---CCCCcchhHHHHHHhhhccchhhHHHHHHHHHHhhhhccccCCCCC
Q psy9641 80 DERQKASQVLQGPNPT---YKGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFAS 141 (145)
Q Consensus 80 ~~R~~as~~~~~~~~~---~~~~~~~~~~~l~~Al~~s~i~syaQGf~Ll~~As~~~~W~~~~~~ 141 (145)
++|..+++.|++|... ...++.+|+++||+|+|+|+|+||+|||+||++||++|+|++|+..
T Consensus 294 ~~r~~~~~~~~gp~~~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ 358 (470)
T PTZ00142 294 EERTKASSHLAGPNPANKTETEDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGE 358 (470)
T ss_pred HHHHHhccccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 9999999999877311 1225678999999999999999999999999999999999999864
No 5
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=2e-44 Score=317.23 Aligned_cols=141 Identities=47% Similarity=0.697 Sum_probs=130.9
Q ss_pred ChHHHHhhccCcchhHHHHHHHHHhhccCC-CCcccccccccccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhhccch
Q psy9641 1 MSAVFEDWNKGELDSFLIEITKDILKFKDT-DGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLF 79 (145)
Q Consensus 1 ia~vf~~Wn~G~l~SyLleIt~~il~~kD~-~g~~lld~I~D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S~~k 79 (145)
+.+||+.||+|.++|||+||+.++|.++|. +|.|+||+|+|+++|||||+||+++|+++|||+|+|++||++|+.|.+|
T Consensus 203 l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k 282 (459)
T PRK09287 203 IADVFAEWNKGELNSYLIEITADILRQKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLK 282 (459)
T ss_pred HHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCCcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccH
Confidence 468999999999999999999999999886 6889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHHhhhhccccCCCCC
Q psy9641 80 DERQKASQVLQGPNPTYKGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFAS 141 (145)
Q Consensus 80 ~~R~~as~~~~~~~~~~~~~~~~~~~~l~~Al~~s~i~syaQGf~Ll~~As~~~~W~~~~~~ 141 (145)
++|+.+++.+++|......++..|+++||+|||+|+|+||+|||+||++||++|+|++|+..
T Consensus 283 ~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ 344 (459)
T PRK09287 283 DQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGE 344 (459)
T ss_pred HHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999998774322236678999999999999999999999999999999999999864
No 6
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=3.5e-44 Score=316.04 Aligned_cols=141 Identities=52% Similarity=0.702 Sum_probs=131.0
Q ss_pred ChHHHHhhccCcchhHHHHHHHHHhhccCCCCcccccccccccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhhccchH
Q psy9641 1 MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFD 80 (145)
Q Consensus 1 ia~vf~~Wn~G~l~SyLleIt~~il~~kD~~g~~lld~I~D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S~~k~ 80 (145)
+.++|+.||+|.++|||+||++++|++||++|+|+||+|+|+++|||||+||++||+++|||+|+|++||++|+.|.+|+
T Consensus 211 l~~v~~~w~~~~~~S~l~~~~~~~~~~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~ 290 (467)
T TIGR00873 211 IAEVFTEWNNGELDSYLIEITADILKKKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKE 290 (467)
T ss_pred HHHHHHHhcCCcccchHHHhHHHHHhccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHH
Confidence 36899999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCC-CCCCcchhHHHHHHhhhccchhhHHHHHHHHHHhhhhccccCCCCC
Q psy9641 81 ERQKASQVLQGPNPT-YKGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFAS 141 (145)
Q Consensus 81 ~R~~as~~~~~~~~~-~~~~~~~~~~~l~~Al~~s~i~syaQGf~Ll~~As~~~~W~~~~~~ 141 (145)
+|..+++.|++|... ...++.+|+++||+|+|+|+|+||+|||+||++||++|+|++|+..
T Consensus 291 ~r~~~~~~~~gp~~~~~~~~~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ 352 (467)
T TIGR00873 291 ERVAASKVLSGPLAPEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGE 352 (467)
T ss_pred HHHHhhcccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 999999999876322 2235678999999999999999999999999999999999999854
No 7
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=3.8e-38 Score=279.59 Aligned_cols=141 Identities=34% Similarity=0.450 Sum_probs=128.2
Q ss_pred ChHHHHhhccCcchhHHHHHHHHHhhccCCC-CcccccccccccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhhccch
Q psy9641 1 MSAVFEDWNKGELDSFLIEITKDILKFKDTD-GAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLF 79 (145)
Q Consensus 1 ia~vf~~Wn~G~l~SyLleIt~~il~~kD~~-g~~lld~I~D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S~~k 79 (145)
+.++|+.||+|.++|||+||+.+++..+|+. .++.+|.|+|.++|||||+|++++|.++|||+|+|++||++|+.|++|
T Consensus 220 l~~vf~~~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 220 LAEVFAEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred HHHHHHHHcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 3578999999999999999999999888643 369999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCC-CC-----CCCCcchhHHHHHHhhhccchhhHHHHHHHHHHhhhhccccCCCCC
Q psy9641 80 DERQKASQVLQGPN-PT-----YKGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFAS 141 (145)
Q Consensus 80 ~~R~~as~~~~~~~-~~-----~~~~~~~~~~~l~~Al~~s~i~syaQGf~Ll~~As~~~~W~~~~~~ 141 (145)
++|+++++.|++|. .. ...++++|+++|++|||||+|+||+|||+||++||++|+|++|+..
T Consensus 300 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ 367 (493)
T PLN02350 300 EERVAAAKVFKEAGLEDILSADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGE 367 (493)
T ss_pred HHHHHHHhhcCCCCccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 99999999998762 11 1236778999999999999999999999999999999999999864
No 8
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.9e-19 Score=149.19 Aligned_cols=75 Identities=37% Similarity=0.662 Sum_probs=69.5
Q ss_pred hHHHHhhccCc-chhHHHHHHHHHhhccCCCCcccccccccccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhhccchH
Q psy9641 2 SAVFEDWNKGE-LDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFD 80 (145)
Q Consensus 2 a~vf~~Wn~G~-l~SyLleIt~~il~~kD~~g~~lld~I~D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S~~k~ 80 (145)
.+|.+.||+|+ ++|||||+|+..|+ +| +-||+|.+.+...|+|+||+++|+|+|||+|+|+.|+++|+.|...+
T Consensus 203 ~~VA~vW~hGSVIrSWLldLt~~Af~-~d----~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d 277 (300)
T COG1023 203 EAVAEVWNHGSVIRSWLLDLTAEAFK-KD----PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDD 277 (300)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHh-hC----CCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccchh
Confidence 57889999999 99999999999998 55 57999999999999999999999999999999999999999997765
Q ss_pred H
Q psy9641 81 E 81 (145)
Q Consensus 81 ~ 81 (145)
+
T Consensus 278 ~ 278 (300)
T COG1023 278 T 278 (300)
T ss_pred h
Confidence 3
No 9
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.36 E-value=7.5e-13 Score=110.05 Aligned_cols=73 Identities=30% Similarity=0.582 Sum_probs=66.9
Q ss_pred hHHHHhhccCc-chhHHHHHHHHHhhccCCCCcccccccccccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhhccch
Q psy9641 2 SAVFEDWNKGE-LDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLF 79 (145)
Q Consensus 2 a~vf~~Wn~G~-l~SyLleIt~~il~~kD~~g~~lld~I~D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S~~k 79 (145)
.++++-|+.|. ++|||++++.++|+++ +.++.|.|.+.++|||+|++++|+++|+|+|+|++|++.|..|+.+
T Consensus 202 ~~~~~i~~~g~~~~s~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~ 275 (298)
T TIGR00872 202 PEVARVWRRGSVIRSWLLDLTAIAFRES-----PDLAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDL 275 (298)
T ss_pred HHHHHHHcCCchhHhHHHHHHHHHHhcC-----CcHHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 46788899998 7999999999999854 3678899999999999999999999999999999999999999887
No 10
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.57 E-value=6.8e-08 Score=86.68 Aligned_cols=76 Identities=9% Similarity=0.191 Sum_probs=60.0
Q ss_pred ChHHHHhhccCc-chhHHHHHHHHHhhccCCC-Ccc-cccccc-cccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhhc
Q psy9641 1 MSAVFEDWNKGE-LDSFLIEITKDILKFKDTD-GAP-LVEKIK-DYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLS 76 (145)
Q Consensus 1 ia~vf~~Wn~G~-l~SyLleIt~~il~~kD~~-g~~-lld~I~-D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S 76 (145)
+++|+.-|+.|. ++|+||+...++++ +|++ ..- +-+.+. ......+.+||++++|++.|+|+|+|++|++ |+-|
T Consensus 365 l~~ia~iWr~GcIIrs~lL~~i~~a~~-~~~~l~~l~~~~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~-y~~s 442 (493)
T PLN02350 365 LGELARIWKGGCIIRAVFLDRIKKAYD-RNPDLASLLVDPEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLA-YFDT 442 (493)
T ss_pred HHHHHHHhCCCceeeHhHHHHHHHHHH-cCCChhhhcCCHHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHH-HHHh
Confidence 367899999999 99999999999997 4543 111 112222 4457888999999999999999999999999 8877
Q ss_pred cc
Q psy9641 77 SL 78 (145)
Q Consensus 77 ~~ 78 (145)
..
T Consensus 443 ~~ 444 (493)
T PLN02350 443 YR 444 (493)
T ss_pred hc
Confidence 54
No 11
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.56 E-value=7.7e-08 Score=85.53 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=61.6
Q ss_pred ChHHHHhhccCc-chhHHHHHHHHHhhccCCC-Cc-ccccccccccCCCchh-HHHHHHHHhcCCChhHHHHHHHHhhhc
Q psy9641 1 MSAVFEDWNKGE-LDSFLIEITKDILKFKDTD-GA-PLVEKIKDYAGQKGTG-KWTAISALDYGVPVTLIGESVFSRCLS 76 (145)
Q Consensus 1 ia~vf~~Wn~G~-l~SyLleIt~~il~~kD~~-g~-~lld~I~D~a~~kGTG-~Wt~~eAl~l~vp~p~I~~Av~aR~~S 76 (145)
+++|.+-|+.|. ++|+||+-..++++ +|++ .. .+-+.+.+.....+.| ||++..|++.|||+|+|++|+ +|+-|
T Consensus 342 l~~ia~iWr~GcIIRs~lL~~i~~a~~-~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL-~y~d~ 419 (459)
T PRK09287 342 LGEIARIWRGGCIIRAQFLQKITDAYE-ANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSAL-SYYDS 419 (459)
T ss_pred HHHHHHHhCCCCEEeHHHHHHHHHHHH-hCCCchhhcCCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHH-HHHHH
Confidence 367889999999 99999999999997 4543 11 1223346777888999 999999999999999999999 88777
Q ss_pred cc
Q psy9641 77 SL 78 (145)
Q Consensus 77 ~~ 78 (145)
..
T Consensus 420 ~~ 421 (459)
T PRK09287 420 YR 421 (459)
T ss_pred hh
Confidence 53
No 12
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.47 E-value=2.9e-07 Score=81.99 Aligned_cols=77 Identities=17% Similarity=0.347 Sum_probs=63.5
Q ss_pred ChHHHHhhccCc-chhHHHHHHHHHhhccCCC-Cc-ccccccccccCCCchh-HHHHHHHHhcCCChhHHHHHH--HHhh
Q psy9641 1 MSAVFEDWNKGE-LDSFLIEITKDILKFKDTD-GA-PLVEKIKDYAGQKGTG-KWTAISALDYGVPVTLIGESV--FSRC 74 (145)
Q Consensus 1 ia~vf~~Wn~G~-l~SyLleIt~~il~~kD~~-g~-~lld~I~D~a~~kGTG-~Wt~~eAl~l~vp~p~I~~Av--~aR~ 74 (145)
+++|.+-|+.|. ++|+||+-..++++ +|++ .. .+-+.+.+.....+.+ ||++..|++.|+|+|+|++|+ +.|+
T Consensus 350 l~~ia~iWr~GcIIrs~lL~~i~~a~~-~~~~l~~l~~~~~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~ 428 (467)
T TIGR00873 350 LGEIALIWRGGCIIRSGFLDKITKAFA-ENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGY 428 (467)
T ss_pred HHHHHHHhCCCceeeHhHHHHHHHHHH-cCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 367899999999 99999999999997 4543 22 1223346777899999 999999999999999999999 9999
Q ss_pred hccc
Q psy9641 75 LSSL 78 (145)
Q Consensus 75 ~S~~ 78 (145)
.|..
T Consensus 429 ~s~~ 432 (467)
T TIGR00873 429 RTAR 432 (467)
T ss_pred hcCc
Confidence 8854
No 13
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.42 E-value=2.6e-07 Score=82.41 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=61.2
Q ss_pred ChHHHHhhccCc-chhHHHHHHHHHhhccCCC-Cc-ccccccccccCCCchh-HHHHHHHHhcCCChhHHHHHHHHhhhc
Q psy9641 1 MSAVFEDWNKGE-LDSFLIEITKDILKFKDTD-GA-PLVEKIKDYAGQKGTG-KWTAISALDYGVPVTLIGESVFSRCLS 76 (145)
Q Consensus 1 ia~vf~~Wn~G~-l~SyLleIt~~il~~kD~~-g~-~lld~I~D~a~~kGTG-~Wt~~eAl~l~vp~p~I~~Av~aR~~S 76 (145)
+++|++-|+.|. ++|+||+-..++++ +|++ .. .+-+.+.+.....+.+ ||++..|++.|+|+|+|++|++ |+-|
T Consensus 356 l~~ia~iWr~GcIIRs~lL~~i~~a~~-~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~-y~~s 433 (470)
T PTZ00142 356 LGEIARIWRGGCIIRAVFLDRIKNAFK-KNPQLDLLFLDPDFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLA-YYQM 433 (470)
T ss_pred HHHHHHHhCCCceeeHhHHHHHHHHHh-cCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHH-HHHH
Confidence 367899999999 99999999999997 4433 11 2233446778889999 9999999999999999999998 7666
Q ss_pred c
Q psy9641 77 S 77 (145)
Q Consensus 77 ~ 77 (145)
.
T Consensus 434 ~ 434 (470)
T PTZ00142 434 Y 434 (470)
T ss_pred h
Confidence 4
No 14
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.21 E-value=1.8e-06 Score=71.85 Aligned_cols=72 Identities=35% Similarity=0.671 Sum_probs=59.3
Q ss_pred hHHHHhhccCc-chhHHHHHHHHHhhccCCCCcccccccccccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhhccc
Q psy9641 2 SAVFEDWNKGE-LDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSL 78 (145)
Q Consensus 2 a~vf~~Wn~G~-l~SyLleIt~~il~~kD~~g~~lld~I~D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S~~ 78 (145)
..+|+.|+.|. ++||++++..+++.+ |+ .++.+.+...++++++|++++|.+.|+|+|++++|++.|+.|..
T Consensus 204 ~~~~~~~~~~~~~~s~~l~~~~~~~~~-~~----~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~ 276 (301)
T PRK09599 204 AAVAEVWRRGSVIRSWLLDLTADALAE-DP----KLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQ 276 (301)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHhc-CC----CHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 57899999986 799999999999963 32 23334455566888999999999999999999999999888864
No 15
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.89 E-value=2.4e-05 Score=65.10 Aligned_cols=73 Identities=29% Similarity=0.516 Sum_probs=60.8
Q ss_pred hHHHHhhccCc-chhHHHHHHHHHhhccCCCCcccccccccccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhhccch
Q psy9641 2 SAVFEDWNKGE-LDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLF 79 (145)
Q Consensus 2 a~vf~~Wn~G~-l~SyLleIt~~il~~kD~~g~~lld~I~D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S~~k 79 (145)
..+++.|+.|. ++|++++...+++...+ + ...+.+...+.||++|+++.|.+.|+|+|.+..+++.|+.+..+
T Consensus 203 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~----~-~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~ 276 (299)
T PRK12490 203 EDVARLWRNGSVIRSWLLDLTVKALAEDP----K-LAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQED 276 (299)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhhCC----C-hhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcc
Confidence 46899999865 99999999999886322 1 23556777789999999999999999999999999999988765
No 16
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=97.66 E-value=3.1e-05 Score=65.77 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=49.7
Q ss_pred hHHHHhhccCc-chhHHHHHHHHHhhccCCC-Cccccc-cccccc-CCCchhHHHHHHHHhcCCChhHHHHHHHHhhhc
Q psy9641 2 SAVFEDWNKGE-LDSFLIEITKDILKFKDTD-GAPLVE-KIKDYA-GQKGTGKWTAISALDYGVPVTLIGESVFSRCLS 76 (145)
Q Consensus 2 a~vf~~Wn~G~-l~SyLleIt~~il~~kD~~-g~~lld-~I~D~a-~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S 76 (145)
++|.+-|+.|. ++|.||+-..++++ +|++ ...+++ .+.+.. ...+..||++..|++.|+|+|++++|+ .++-|
T Consensus 178 ~~ia~IWr~GCIIRs~lL~~i~~af~-~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ai~~gipvPalsaaL-~Y~ds 254 (291)
T PF00393_consen 178 SEIARIWRGGCIIRSWLLDDIAEAFK-ENPDLENLLLDPYFAEELKDNQPSLRRVVSLAIEAGIPVPALSAAL-SYFDS 254 (291)
T ss_dssp HHHHHHTSSSSTT-BTHHHHHHHHHH-H-TT-STGGGSHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHH-HHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHH-hCCChhccccCHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH-HHHHh
Confidence 57889999999 99999999999997 4544 223333 222222 335678999999999999999999999 44433
No 17
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.04 E-value=0.0051 Score=51.23 Aligned_cols=36 Identities=11% Similarity=0.018 Sum_probs=32.6
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHHhhhhccccCCC
Q psy9641 100 DTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIF 139 (145)
Q Consensus 100 ~~~~~~~l~~Al~~s~i~syaQGf~Ll~~As~~~~W~~~~ 139 (145)
...+++.++++++++++++|+|||.|++++ ||++++
T Consensus 166 ~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~----g~~ld~ 201 (298)
T TIGR00872 166 SGHFVKMVHNGIEYGMMAAIAEGFEILRNS----QFDFDI 201 (298)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcCH
Confidence 457899999999999999999999999987 887775
No 18
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=92.16 E-value=0.13 Score=42.70 Aligned_cols=36 Identities=11% Similarity=-0.027 Sum_probs=32.7
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHHhhhhccccCCC
Q psy9641 100 DTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIF 139 (145)
Q Consensus 100 ~~~~~~~l~~Al~~s~i~syaQGf~Ll~~As~~~~W~~~~ 139 (145)
...+++.+.++++++.+.+|+|||.|+++ ++|++|.
T Consensus 168 ~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~----~~~gld~ 203 (301)
T PRK09599 168 AGHFVKMVHNGIEYGMMQAYAEGFELLEA----SRFDLDL 203 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCCCH
Confidence 45789999999999999999999999998 8898885
No 19
>KOG2653|consensus
Probab=88.55 E-value=0.63 Score=41.61 Aligned_cols=78 Identities=17% Similarity=0.343 Sum_probs=53.7
Q ss_pred hHHHHhhccCc-chhHHHHHHHHHhhccCCC-CcccccccccccCCCchhHH--HHHHHHhcCCChhHHHHHHHHhhhcc
Q psy9641 2 SAVFEDWNKGE-LDSFLIEITKDILKFKDTD-GAPLVEKIKDYAGQKGTGKW--TAISALDYGVPVTLIGESVFSRCLSS 77 (145)
Q Consensus 2 a~vf~~Wn~G~-l~SyLleIt~~il~~kD~~-g~~lld~I~D~a~~kGTG~W--t~~eAl~l~vp~p~I~~Av~aR~~S~ 77 (145)
++|..-|..|. ++|-+|+-..+.++ ++++ ..-++|.---.+-.+.--.| ++--|.+.|+|+|.+.+|+. +.-.
T Consensus 360 ~~iAlmWrgGCIIRsvfL~~I~~a~~-~~p~l~nll~d~fF~~~v~~~q~~wr~vV~~a~~~gIptP~~st~La--fydg 436 (487)
T KOG2653|consen 360 GGIALMWRGGCIIRSVFLDRIKKAYQ-RNPDLANLLLDPFFAKAVEEAQDSWRRVVALAVEAGIPTPAFSTALA--FYDG 436 (487)
T ss_pred HHHHHHHcCCeEeeHHHHHHHHHHHh-cCccHhhhccCHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH--HHhh
Confidence 46777899998 89877776777776 3433 34566654444445555666 46678999999999999985 3445
Q ss_pred chHHH
Q psy9641 78 LFDER 82 (145)
Q Consensus 78 ~k~~R 82 (145)
++.+|
T Consensus 437 yr~e~ 441 (487)
T KOG2653|consen 437 YRSER 441 (487)
T ss_pred hhhhc
Confidence 55555
No 20
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=84.37 E-value=1.5 Score=39.50 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=45.3
Q ss_pred hHHHHhhccCc-chhHHHHHHHHHhhccCCC-Cc----ccccccccccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhh
Q psy9641 2 SAVFEDWNKGE-LDSFLIEITKDILKFKDTD-GA----PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCL 75 (145)
Q Consensus 2 a~vf~~Wn~G~-l~SyLleIt~~il~~kD~~-g~----~lld~I~D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~ 75 (145)
++|..-|..|. ++|=+|+-..+.+. ++++ -. |-.-.++.... +.=|=.+-.|.+.|+|+|++++|+. +.
T Consensus 355 ~~iA~iWR~GCIIRs~FL~~I~~af~-~~p~l~nLl~~pyF~~~~~~~~--~~~R~vV~~a~~~giP~P~~ssals--y~ 429 (473)
T COG0362 355 GEIALIWRGGCIIRSKFLDKITDAFD-ENPELANLLLAPYFKSILEEYQ--QSLRRVVAYAVEAGIPVPAFSSALS--YY 429 (473)
T ss_pred HHHHHHHhccceehHHHHHHHHHHHh-cCcchhhhhcCHHHHHHHHHHH--HHHHHHHHHHHhcCCCchHHHHHHH--HH
Confidence 46777899999 88655555557766 3332 11 11111221111 1234467889999999999999984 34
Q ss_pred ccchHHH
Q psy9641 76 SSLFDER 82 (145)
Q Consensus 76 S~~k~~R 82 (145)
-+++.+|
T Consensus 430 Dsyr~~~ 436 (473)
T COG0362 430 DSYRTAR 436 (473)
T ss_pred HHhhhcc
Confidence 4444444
No 21
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=67.98 E-value=4.1 Score=34.76 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=28.5
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHHhh
Q psy9641 100 DTTYFNFKDKGNSGSPIQPSLEWLVALREKK 130 (145)
Q Consensus 100 ~~~~~~~l~~Al~~s~i~syaQGf~Ll~~As 130 (145)
.-.|+..+++..=-+.+.+|+.||+||+.+-
T Consensus 167 sGHfvKMVHNGIEYGmM~a~aEGfelL~~s~ 197 (300)
T COG1023 167 SGHFVKMVHNGIEYGMMQAIAEGFELLKNSP 197 (300)
T ss_pred cchhHHHHhccHHHHHHHHHHHHHHHHHhCC
Confidence 3479999999999999999999999999876
No 22
>PF12639 Colicin-DNase: DNase/tRNase domain of colicin-like bacteriocin; InterPro: IPR024622 This entry represents a C-terminal domain with endonuclease activity found in some colicin/pyocin bacteriocins, including colicin E2, E7, E9 and pyocin S1 and S2. The structure of this domain in colicin E7 has been described as a novel alpha/beta fold containing a Zn2+ ion [].; GO: 0004519 endonuclease activity; PDB: 3U43_B 2VLN_B 1V14_A 1V13_A 2GYK_B 1V15_C 2GZJ_F 2VLP_B 1FSJ_C 2GZG_B ....
Probab=45.45 E-value=5.2 Score=29.31 Aligned_cols=47 Identities=21% Similarity=0.361 Sum_probs=35.4
Q ss_pred ccCCCchhHHHHHHHHhcCCChh-HHHHHHHHhhhccchHHHHHHHhhhC
Q psy9641 42 YAGQKGTGKWTAISALDYGVPVT-LIGESVFSRCLSSLFDERQKASQVLQ 90 (145)
Q Consensus 42 ~a~~kGTG~Wt~~eAl~l~vp~p-~I~~Av~aR~~S~~k~~R~~as~~~~ 90 (145)
++. +|.|.|-.-+ -..|+|+| .|+.-+-.|-.+.+++-|.+.-+...
T Consensus 8 ~~~-~g~~~~~~~~-~~~~~~ip~~i~d~l~~~~f~~F~~~r~~~w~~V~ 55 (110)
T PF12639_consen 8 VVT-KGQGIWPIFA-SGSGAPIPSQIADKLRGRRFSQFDEFRKAFWKEVA 55 (110)
T ss_dssp EEB---BTTGGGGG-STT-EE-BHHHHHHHTTSEESSHHHHHHHHHHHHH
T ss_pred cee-cccccCcccc-ccCCccCchhHHHHhcccccccHHHHHHHHHHHHH
Confidence 444 6679999987 88899999 67778888999999999998887763
No 23
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=43.29 E-value=5 Score=23.69 Aligned_cols=15 Identities=33% Similarity=0.906 Sum_probs=12.5
Q ss_pred HHhhccCcchhHHHH
Q psy9641 5 FEDWNKGELDSFLIE 19 (145)
Q Consensus 5 f~~Wn~G~l~SyLle 19 (145)
|+.|+..+|++||.+
T Consensus 1 fdtWs~~~L~~wL~~ 15 (38)
T PF10281_consen 1 FDTWSDSDLKSWLKS 15 (38)
T ss_pred CCCCCHHHHHHHHHH
Confidence 678888889999976
No 24
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=34.48 E-value=39 Score=27.99 Aligned_cols=36 Identities=14% Similarity=0.014 Sum_probs=31.6
Q ss_pred cchhHHHHHHhhhccchhhHHHHHHHHHHhhhhccccCCC
Q psy9641 100 DTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIF 139 (145)
Q Consensus 100 ~~~~~~~l~~Al~~s~i~syaQGf~Ll~~As~~~~W~~~~ 139 (145)
...+++.+.+.++.+.+.+++++|.|.+++. |++|+
T Consensus 167 ~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g----~~ld~ 202 (299)
T PRK12490 167 SGHFLKMVHNGIEYGMMQAYAEGLELLDKSD----FDFDV 202 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----cCCCH
Confidence 4568899999999999999999999999887 77664
No 25
>PF14108 DUF4281: Domain of unknown function (DUF4281)
Probab=31.82 E-value=53 Score=24.54 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=18.4
Q ss_pred hhHHHHHHHHhcCCChhHHHHHH
Q psy9641 48 TGKWTAISALDYGVPVTLIGESV 70 (145)
Q Consensus 48 TG~Wt~~eAl~l~vp~p~I~~Av 70 (145)
.|+|..+++.++|||-..+.-.+
T Consensus 93 vGrwi~~d~~~~gi~~~~~~~~L 115 (129)
T PF14108_consen 93 VGRWIYLDARRRGIPHLLTAPSL 115 (129)
T ss_pred HHHHHHHHHHHcCCCcchHHHHH
Confidence 59999999999999766555444
No 26
>COG3651 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.33 E-value=37 Score=25.41 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=24.4
Q ss_pred CCCchhHHHH-----HHHHhcCCChhHHHHHHHHhhhc
Q psy9641 44 GQKGTGKWTA-----ISALDYGVPVTLIGESVFSRCLS 76 (145)
Q Consensus 44 ~~kGTG~Wt~-----~eAl~l~vp~p~I~~Av~aR~~S 76 (145)
+-|...+|+. +||++-|+.-|+|-+|.-+|.+-
T Consensus 75 glkpgdrwclcaarwqealdagmap~v~lsath~~ale 112 (125)
T COG3651 75 GLKPGDRWCLCAARWQEALDAGMAPPVILSATHARALE 112 (125)
T ss_pred CCCCCCeeeeeHHHHHHHHhcCCCCceehhhhHHHHHh
Confidence 4444445542 79999999999999988887653
No 27
>KOG2058|consensus
Probab=28.45 E-value=53 Score=29.74 Aligned_cols=28 Identities=7% Similarity=-0.211 Sum_probs=21.8
Q ss_pred chhHHHHHHhhhcc----chhhHHHHHHHHHH
Q psy9641 101 TTYFNFKDKGNSGS----PIQPSLEWLVALRE 128 (145)
Q Consensus 101 ~~~~~~l~~Al~~s----~i~syaQGf~Ll~~ 128 (145)
..++..||+-|++= .-++|+|||+.|..
T Consensus 220 ~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAa 251 (436)
T KOG2058|consen 220 SDGRQTLRRVLLAYARHNPSVGYCQGMNFLAA 251 (436)
T ss_pred chHHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Confidence 35688899888752 56899999998865
No 28
>COG0374 HyaB Ni,Fe-hydrogenase I large subunit [Energy production and conversion]
Probab=23.34 E-value=69 Score=29.87 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=37.6
Q ss_pred HHHhhccCCC-CcccccccccccCCCc--hhHHHHHHHHhcCCChhHHHHHHHHhhhc
Q psy9641 22 KDILKFKDTD-GAPLVEKIKDYAGQKG--TGKWTAISALDYGVPVTLIGESVFSRCLS 76 (145)
Q Consensus 22 ~~il~~kD~~-g~~lld~I~D~a~~kG--TG~Wt~~eAl~l~vp~p~I~~Av~aR~~S 76 (145)
-.||+-+|+- .-.+..+|+.++...- ++.|.+++|+..-||. .|+.+|++-
T Consensus 41 E~ILkgRDPrDA~~~tqRICGVCt~~Ha~As~~AlE~AlgItvP~----nA~~~Rni~ 94 (545)
T COG0374 41 EIILKGRDPRDAWAITQRICGVCTTSHALASVRALEDALGITVPV----NALLIRNIM 94 (545)
T ss_pred HHHHcCCChhhhHhhhchhcccCccHHHHHHHHHHHHHhCCCCCc----hHHHHHHHH
Confidence 4788999974 5578999999987544 6788888888666554 466777653
No 29
>PRK00124 hypothetical protein; Validated
Probab=21.80 E-value=65 Score=25.03 Aligned_cols=46 Identities=20% Similarity=0.133 Sum_probs=28.9
Q ss_pred hHHHHHHHHhhhccchHHHHHHHhhhCCCCCCCCCCcchhHHHHHHhhh
Q psy9641 64 TLIGESVFSRCLSSLFDERQKASQVLQGPNPTYKGKDTTYFNFKDKGNS 112 (145)
Q Consensus 64 p~I~~Av~aR~~S~~k~~R~~as~~~~~~~~~~~~~~~~~~~~l~~Al~ 112 (145)
-.|...+.+|+++. +.|.... .-+||++-...|+..|...|.+.|.
T Consensus 100 ~nI~~~L~~R~~~~--~lR~~G~-~t~Gp~~~~~~Dr~~F~~~L~~~l~ 145 (151)
T PRK00124 100 DNIDQLLAMRDLMA--TLRRSGI-RTGGPKPFTQEDRSRFEAELDKLIR 145 (151)
T ss_pred HHHHHHHHHHHHHH--HHHHcCC-CCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46899999999984 3454322 1135533333467788888877654
Done!