RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9641
         (145 letters)



>d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase
           (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]}
          Length = 297

 Score =  118 bits (296), Expect = 6e-34
 Identities = 70/104 (67%), Positives = 81/104 (77%)

Query: 1   MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYG 60
           M+  FE+WNK ELDSFLIEIT  ILKF+D DG  L+ KI+D AGQKGTGKWTAISAL+YG
Sbjct: 39  MAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYG 98

Query: 61  VPVTLIGESVFSRCLSSLFDERQKASQVLQGPNPTYKGKDTTYF 104
           VPVTLIGE+VF+RCLSSL DER +AS+ L+GP       D   F
Sbjct: 99  VPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNIPFEGDKKSF 142


>d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase
           (6PGD) {Trypanosoma brucei [TaxId: 5691]}
          Length = 300

 Score =  113 bits (284), Expect = 4e-32
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 1   MSAVFEDW-NKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDY 59
           ++AV EDW +K  L S++++I+    + KD DG+ L E + D  G KGTG W+A  AL+ 
Sbjct: 38  VAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEI 97

Query: 60  GVPVTLIGESVFSRCLSSLFDERQKASQVLQGPNPTYKGKDTTYFNFKD 108
           GVP   +  +V SR  +    ERQ  +    G   +             
Sbjct: 98  GVPAPSLNMAVVSRQFTMYKTERQANASNAPGITQSPGYTLKNKSPSGP 146


>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
           chain {Escherichia coli [TaxId: 562]}
          Length = 1074

 Score = 24.4 bits (52), Expect = 7.2
 Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 3/26 (11%)

Query: 37  EKIKDYAGQKGTGKWTAIS---ALDY 59
           +K K +   +G G +   S     + 
Sbjct: 143 DKAKSFKQARGRGGFVRSSWQEVNEL 168


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 542,423
Number of extensions: 23427
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 5
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.0 bits)