BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9642
(437 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P2U9|CSN3_DANRE COP9 signalosome complex subunit 3 OS=Danio rerio GN=cops3 PE=2
SV=1
Length = 423
Score = 469 bits (1207), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/422 (53%), Positives = 307/422 (72%), Gaps = 5/422 (1%)
Query: 1 MATALEQFVNNVRQLSAQGSFRELTEIIQKSMDVLTKYGQHLDNVLETLETFQHSLGILA 60
MA+ALEQFVNNVRQLSAQG +L E+I KS ++L K HLD VL L+ +HSLG+LA
Sbjct: 1 MASALEQFVNNVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDIQEHSLGVLA 60
Query: 61 ILSAKLTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLK 120
+L K ++ + + E LFSQ+Q F++ CN + IR+A D +A L HQ T +++ K
Sbjct: 61 VLFVKFSMPNIPDF-----ETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERK 115
Query: 121 TPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQ 180
P RGI +++ AI K+Q + +QLTS+H+DLCQLCLLA+ FKPA+ FL++D+ I E
Sbjct: 116 QPLRGISILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAVPFLELDMMDICKENGA 175
Query: 181 FDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVY 240
+D K+FL Y+YYGGMIY LKN+ERALYFFE ITTPA+AVSHIMLE YKKY+L+ LI++
Sbjct: 176 YDAKHFLCYYYYGGMIYTGLKNFERALYFFEQAITTPAMAVSHIMLEAYKKYILVSLILH 235
Query: 241 GKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLT 300
GK LPK SQ + R+IKPLS Y +L +Y NN EL+ L+ K+++ F+RD NTGL
Sbjct: 236 GKVQQLPKYTSQIVGRFIKPLSNAYHELAQIYATNNPAELRALVNKHSETFTRDNNTGLV 295
Query: 301 KQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360
KQ ++SLYK NI+RLTKTFLTLSL D+ASRVQL P +AE Y+L MI EIYA+IN+KD
Sbjct: 296 KQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIYASINQKD 355
Query: 361 GMVVFNDNPQRFNNPLTFAQIESNIRACMHLDGKFQAMEEEILVNPLYVKKAASPSDEET 420
GMV F+DNP+++NNP +I+ + C+ LD K ++M++EI VNP +V+K+ +++
Sbjct: 356 GMVCFHDNPEKYNNPAMLHKIDQEMLKCIELDEKLKSMDQEITVNPQFVQKSMGTQEDDV 415
Query: 421 GS 422
GS
Sbjct: 416 GS 417
>sp|A6H7B5|CSN3_BOVIN COP9 signalosome complex subunit 3 OS=Bos taurus GN=COPS3 PE=2 SV=1
Length = 423
Score = 468 bits (1203), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/425 (53%), Positives = 310/425 (72%), Gaps = 6/425 (1%)
Query: 1 MATALEQFVNNVRQLSAQGSFRELTEIIQKSMDVLTKYGQHLDNVLETLETFQHSLGILA 60
MA+ALEQFVN+VRQLSAQG +L E+I KS ++L K HLD VL L+ +HSLG+LA
Sbjct: 1 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA 60
Query: 61 ILSAKLTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLK 120
+L K ++ S + E LFSQ+Q F++ CN + IR+A D +A L HQ T +++ K
Sbjct: 61 VLFVKFSMPSVPDF-----ETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERK 115
Query: 121 TPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQ 180
P RGI +++ AI K+Q + +QLTS+H+DLCQLCLLA+ FKPAL +LDVD+ I E
Sbjct: 116 QPLRGIGVLRQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMVDICKENGA 175
Query: 181 FDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVY 240
+D K+FL Y+YYGGM+Y LKN+ERALYF+E ITTPA+AVSHIMLE YKKY+L+ LI+
Sbjct: 176 YDAKHFLCYYYYGGMVYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILL 235
Query: 241 GKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLT 300
GK LPK SQ + R+IKPLS Y +L VY+ NN +EL+ L+ K++++F+RD N GL
Sbjct: 236 GKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRSLVTKHSEIFTRDNNMGLV 295
Query: 301 KQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360
KQ ++SLYK NI+RLTKTFLTLSL D+ASRVQL P +AE Y+L MI EI+A+IN+KD
Sbjct: 296 KQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKD 355
Query: 361 GMVVFNDNPQRFNNPLTFAQIESNIRACMHLDGKFQAMEEEILVNPLYVKKAASPSDEET 420
GMV F+DNP+++NNP I+ + C+ LD + +AM++EI VNP +V+K+ ++++
Sbjct: 356 GMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDS 415
Query: 421 GSSKP 425
G +KP
Sbjct: 416 G-NKP 419
>sp|O88543|CSN3_MOUSE COP9 signalosome complex subunit 3 OS=Mus musculus GN=Cops3 PE=1
SV=3
Length = 423
Score = 467 bits (1201), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/425 (53%), Positives = 310/425 (72%), Gaps = 6/425 (1%)
Query: 1 MATALEQFVNNVRQLSAQGSFRELTEIIQKSMDVLTKYGQHLDNVLETLETFQHSLGILA 60
MA+ALEQFVN+VRQLSAQG +L E+I KS ++L K HLD VL L+ +HSLG+LA
Sbjct: 1 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA 60
Query: 61 ILSAKLTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLK 120
+L K ++ S + E LFSQ+Q F++ CN + IR+A D +A L HQ T +++ K
Sbjct: 61 VLFVKFSMPSVPDF-----ETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERK 115
Query: 121 TPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQ 180
P RGI +++ AI K+Q + +QLTS+H+DLCQLCLLA+ FKPAL +LDVD+ I E
Sbjct: 116 QPLRGIGILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGA 175
Query: 181 FDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVY 240
+D K+FL Y+YYGGMIY LKN+ERALYF+E ITTPA+AVSHIMLE YKKY+L+ LI+
Sbjct: 176 YDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILL 235
Query: 241 GKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLT 300
GK LPK SQ + R+IKPLS Y +L VY+ NN +EL++L+ K+++ F+RD N GL
Sbjct: 236 GKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVSKHSETFTRDNNMGLV 295
Query: 301 KQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360
KQ ++SLYK NI+RLTKTFLTLSL D+ASRVQL P +AE Y+L MI EI+A+IN+KD
Sbjct: 296 KQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKD 355
Query: 361 GMVVFNDNPQRFNNPLTFAQIESNIRACMHLDGKFQAMEEEILVNPLYVKKAASPSDEET 420
GMV F+DNP+++NNP I+ + C+ LD + +AM++EI VNP +V+K+ ++++
Sbjct: 356 GMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDS 415
Query: 421 GSSKP 425
G +KP
Sbjct: 416 G-NKP 419
>sp|Q5RFS2|CSN3_PONAB COP9 signalosome complex subunit 3 OS=Pongo abelii GN=COPS3 PE=2
SV=1
Length = 423
Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/425 (53%), Positives = 310/425 (72%), Gaps = 6/425 (1%)
Query: 1 MATALEQFVNNVRQLSAQGSFRELTEIIQKSMDVLTKYGQHLDNVLETLETFQHSLGILA 60
MA+ALEQFVN+VRQLSAQG +L E+I KS ++L K HLD VL L+ +HSLG+LA
Sbjct: 1 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA 60
Query: 61 ILSAKLTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLK 120
+L K ++ S + E LFSQ+Q F++ CN + IR+A D +A L HQ T +++ K
Sbjct: 61 VLFVKFSMPSVPDF-----ETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERK 115
Query: 121 TPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQ 180
P RGI +++ AI K+Q + +QLTS+H+DLCQLCLLA+ FKPAL +LDVD+ I E
Sbjct: 116 QPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGA 175
Query: 181 FDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVY 240
+D K+FL Y+YYGGMIY LKN+ERALYF+E ITTPA+AVSHIMLE YKKY+L+ LI+
Sbjct: 176 YDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILL 235
Query: 241 GKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLT 300
GK LPK SQ + R+IKPLS Y +L VY+ NN +EL++L+ K+++ F+RD N GL
Sbjct: 236 GKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLV 295
Query: 301 KQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360
KQ ++SLYK NI+RLTKTFLTLSL D+ASRVQL P +AE Y+L MI EI+A+IN+KD
Sbjct: 296 KQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKD 355
Query: 361 GMVVFNDNPQRFNNPLTFAQIESNIRACMHLDGKFQAMEEEILVNPLYVKKAASPSDEET 420
GMV F+DNP+++NNP I+ + C+ LD + +AM++EI VNP +V+K+ ++++
Sbjct: 356 GMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDS 415
Query: 421 GSSKP 425
G +KP
Sbjct: 416 G-NKP 419
>sp|Q4R898|CSN3_MACFA COP9 signalosome complex subunit 3 OS=Macaca fascicularis GN=COPS3
PE=2 SV=1
Length = 423
Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/425 (53%), Positives = 310/425 (72%), Gaps = 6/425 (1%)
Query: 1 MATALEQFVNNVRQLSAQGSFRELTEIIQKSMDVLTKYGQHLDNVLETLETFQHSLGILA 60
MA+ALEQFVN+VRQLSAQG +L E+I KS ++L K HLD VL L+ +HSLG+LA
Sbjct: 1 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA 60
Query: 61 ILSAKLTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLK 120
+L K ++ S + E LFSQ+Q F++ CN + IR+A D +A L HQ T +++ K
Sbjct: 61 VLFVKFSMPSVPDF-----ETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERK 115
Query: 121 TPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQ 180
P RGI +++ AI K+Q + +QLTS+H+DLCQLCLLA+ FKPAL +LDVD+ I E
Sbjct: 116 QPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGA 175
Query: 181 FDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVY 240
+D K+FL Y+YYGGMIY LKN+ERALYF+E ITTPA+AVSHIMLE YKKY+L+ LI+
Sbjct: 176 YDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILL 235
Query: 241 GKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLT 300
GK LPK SQ + R+IKPLS Y +L VY+ NN +EL++L+ K+++ F+RD N GL
Sbjct: 236 GKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLV 295
Query: 301 KQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360
KQ ++SLYK NI+RLTKTFLTLSL D+ASRVQL P +AE Y+L MI EI+A+IN+KD
Sbjct: 296 KQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKD 355
Query: 361 GMVVFNDNPQRFNNPLTFAQIESNIRACMHLDGKFQAMEEEILVNPLYVKKAASPSDEET 420
GMV F+DNP+++NNP I+ + C+ LD + +AM++EI VNP +V+K+ ++++
Sbjct: 356 GMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDS 415
Query: 421 GSSKP 425
G +KP
Sbjct: 416 G-NKP 419
>sp|Q9UNS2|CSN3_HUMAN COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1
SV=3
Length = 423
Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/425 (53%), Positives = 310/425 (72%), Gaps = 6/425 (1%)
Query: 1 MATALEQFVNNVRQLSAQGSFRELTEIIQKSMDVLTKYGQHLDNVLETLETFQHSLGILA 60
MA+ALEQFVN+VRQLSAQG +L E+I KS ++L K HLD VL L+ +HSLG+LA
Sbjct: 1 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA 60
Query: 61 ILSAKLTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLK 120
+L K ++ S + E LFSQ+Q F++ CN + IR+A D +A L HQ T +++ K
Sbjct: 61 VLFVKFSMPSVPDF-----ETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERK 115
Query: 121 TPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQ 180
P RGI +++ AI K+Q + +QLTS+H+DLCQLCLLA+ FKPAL +LDVD+ I E
Sbjct: 116 QPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGA 175
Query: 181 FDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVY 240
+D K+FL Y+YYGGMIY LKN+ERALYF+E ITTPA+AVSHIMLE YKKY+L+ LI+
Sbjct: 176 YDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILL 235
Query: 241 GKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLT 300
GK LPK SQ + R+IKPLS Y +L VY+ NN +EL++L+ K+++ F+RD N GL
Sbjct: 236 GKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLV 295
Query: 301 KQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360
KQ ++SLYK NI+RLTKTFLTLSL D+ASRVQL P +AE Y+L MI EI+A+IN+KD
Sbjct: 296 KQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKD 355
Query: 361 GMVVFNDNPQRFNNPLTFAQIESNIRACMHLDGKFQAMEEEILVNPLYVKKAASPSDEET 420
GMV F+DNP+++NNP I+ + C+ LD + +AM++EI VNP +V+K+ ++++
Sbjct: 356 GMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDS 415
Query: 421 GSSKP 425
G +KP
Sbjct: 416 G-NKP 419
>sp|Q68FW9|CSN3_RAT COP9 signalosome complex subunit 3 OS=Rattus norvegicus GN=Cops3
PE=2 SV=1
Length = 423
Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/425 (53%), Positives = 310/425 (72%), Gaps = 6/425 (1%)
Query: 1 MATALEQFVNNVRQLSAQGSFRELTEIIQKSMDVLTKYGQHLDNVLETLETFQHSLGILA 60
MA+ALEQFVN+VRQLSAQG +L E+I KS ++L K HLD VL L+ +HSLG+LA
Sbjct: 1 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA 60
Query: 61 ILSAKLTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLK 120
+L K ++ S + E LFSQ+Q F++ CN + IR+A D +A L HQ T +++ K
Sbjct: 61 VLFVKFSMPSVPDF-----ETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERK 115
Query: 121 TPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQ 180
P RGI +++ AI K+Q + +QLTS+H+DLCQLCLLA+ FKPAL +LDVD+ I E
Sbjct: 116 QPLRGIGILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGA 175
Query: 181 FDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVY 240
+D K+FL Y+YYGGMIY LKN+ERALYF+E ITTPA+AVSHIMLE YKKY+L+ LI+
Sbjct: 176 YDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILL 235
Query: 241 GKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLT 300
GK LPK SQ + R+IKPLS Y +L VY+ NN +EL++L+ K+++ F+RD N GL
Sbjct: 236 GKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLV 295
Query: 301 KQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360
KQ ++SLYK NI+RLTKTFLTLSL D+ASRVQL P +AE Y+L MI EI+A+IN+KD
Sbjct: 296 KQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKD 355
Query: 361 GMVVFNDNPQRFNNPLTFAQIESNIRACMHLDGKFQAMEEEILVNPLYVKKAASPSDEET 420
GMV F+DNP+++NNP I+ + C+ LD + +AM++EI VNP +V+K+ ++++
Sbjct: 356 GMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDS 415
Query: 421 GSSKP 425
G +KP
Sbjct: 416 G-NKP 419
>sp|Q5ZJF1|CSN3_CHICK COP9 signalosome complex subunit 3 OS=Gallus gallus GN=COPS3 PE=2
SV=1
Length = 423
Score = 466 bits (1198), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/425 (53%), Positives = 309/425 (72%), Gaps = 6/425 (1%)
Query: 1 MATALEQFVNNVRQLSAQGSFRELTEIIQKSMDVLTKYGQHLDNVLETLETFQHSLGILA 60
MA+ALEQFVN+VRQLSAQG +L E+I KS ++L K HLD VL L+ +HSLG+LA
Sbjct: 1 MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA 60
Query: 61 ILSAKLTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLK 120
+L K ++ S + E LFSQ+Q F++ CN + IR+A D +A L HQ T +++ K
Sbjct: 61 VLFVKFSMPSIPDF-----ETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERK 115
Query: 121 TPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQ 180
P RGI +++ AI K+Q + +QLTS+H+DLCQLCLLA+ FKPAL +LDVD+ I E
Sbjct: 116 QPLRGISILRQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGA 175
Query: 181 FDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVY 240
+D K+FL Y+YYGGMIY LKN+ERALYF+E ITTPA+AVSHIMLE YKKY+L+ LI+
Sbjct: 176 YDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILL 235
Query: 241 GKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLT 300
GK LPK SQ + R+IKPLS Y +L VY+ N +EL++L+ K+++ F+RD N GL
Sbjct: 236 GKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNKPSELRNLVNKHSETFTRDNNMGLV 295
Query: 301 KQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360
KQ ++SLYK NI+RLTKTFLTLSL D+ASRVQL P +AE Y+L MI EI+A+IN+KD
Sbjct: 296 KQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKD 355
Query: 361 GMVVFNDNPQRFNNPLTFAQIESNIRACMHLDGKFQAMEEEILVNPLYVKKAASPSDEET 420
GMV F+DNP+++NNP I+ + C+ LD + +AM++EI VNP +V+K+ ++++
Sbjct: 356 GMVCFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDS 415
Query: 421 GSSKP 425
G +KP
Sbjct: 416 G-TKP 419
>sp|Q28IV6|CSN3_XENTR COP9 signalosome complex subunit 3 OS=Xenopus tropicalis GN=cops3
PE=2 SV=1
Length = 423
Score = 459 bits (1180), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/425 (53%), Positives = 306/425 (72%), Gaps = 6/425 (1%)
Query: 1 MATALEQFVNNVRQLSAQGSFRELTEIIQKSMDVLTKYGQHLDNVLETLETFQHSLGILA 60
MA+ALEQFVN+VRQLS+QG +L E+I KS ++L K HLD VL L+ +HSLG+LA
Sbjct: 1 MASALEQFVNSVRQLSSQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA 60
Query: 61 ILSAKLTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLK 120
+L K ++ S + E LFSQ+Q F++ CN + IR+A D +A L HQ T +++ K
Sbjct: 61 VLFVKFSMPSIPDF-----ETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERK 115
Query: 121 TPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQ 180
P RGI +++ AI K+Q + +QLTS+H+DLCQL LLA+ FKPAL +LDVD+ I E
Sbjct: 116 QPLRGICVLRQAIDKMQMNANQLTSIHADLCQLSLLAKCFKPALAYLDVDMMDICKENGA 175
Query: 181 FDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVY 240
+D K FL Y+YYGGMIY LKN+ERALYF+E ITTPA+AVSHIMLE YKKY+L+ LI++
Sbjct: 176 YDAKPFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLEAYKKYILVSLILH 235
Query: 241 GKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLT 300
GK LPK SQ + R+IKPLS Y +L VY+ NN EL++L+ K+ + F+RD N GL
Sbjct: 236 GKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPAELRNLVSKHNETFTRDNNMGLV 295
Query: 301 KQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360
KQ ++SLYK NI+RLTKTFLTLSL D+ASRVQL +AE Y+L MI EI+A+IN+KD
Sbjct: 296 KQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMIEDGEIFASINQKD 355
Query: 361 GMVVFNDNPQRFNNPLTFAQIESNIRACMHLDGKFQAMEEEILVNPLYVKKAASPSDEET 420
GMV F+DNP+++NNP I+ + C+ LD + +AM++EI VNP +V+K+ D+++
Sbjct: 356 GMVCFHDNPEKYNNPAMLHNIDQEMLRCIDLDDRLKAMDQEITVNPQFVQKSMGSQDDDS 415
Query: 421 GSSKP 425
G SKP
Sbjct: 416 G-SKP 419
>sp|Q7ZTN8|CSN3_XENLA COP9 signalosome complex subunit 3 OS=Xenopus laevis GN=cops3 PE=2
SV=1
Length = 423
Score = 456 bits (1173), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/425 (52%), Positives = 305/425 (71%), Gaps = 6/425 (1%)
Query: 1 MATALEQFVNNVRQLSAQGSFRELTEIIQKSMDVLTKYGQHLDNVLETLETFQHSLGILA 60
MA+ALEQFVN+VRQLS+QG +L E+I KS ++L K HLD VL L+ +HSLG+LA
Sbjct: 1 MASALEQFVNSVRQLSSQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA 60
Query: 61 ILSAKLTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLK 120
+L K ++ S + E LFSQ+Q F++ CN + IR+A D +A L HQ T +++ K
Sbjct: 61 VLFVKFSMPSIPDF-----ETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERK 115
Query: 121 TPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQ 180
P RGI +I+ AI K+Q + +QLTS+H DLCQL LLA+ FKPAL +LDVD+ I E
Sbjct: 116 QPLRGICVIRQAIDKMQMNANQLTSIHGDLCQLSLLAKCFKPALAYLDVDMMDICKENGA 175
Query: 181 FDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVY 240
+D K FL Y+YYGGMIY LKN+ERA+YF+E ITTPA+AVSHIMLE YKKY+L+ LI++
Sbjct: 176 YDAKPFLCYYYYGGMIYTGLKNFERAMYFYEQAITTPAMAVSHIMLEAYKKYILVSLILH 235
Query: 241 GKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLT 300
GK LPK SQ + R+IKPLS Y +L VY+ NN EL++L+ K+ + F+RD N GL
Sbjct: 236 GKVQQLPKYTSQVVGRFIKPLSNAYHELAQVYSTNNPAELRNLVSKHNETFTRDNNMGLV 295
Query: 301 KQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360
KQ ++SLYK NI+RLTKTFLTLSL D+ASRVQL +AE Y+L MI EI+A+IN+KD
Sbjct: 296 KQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMIEDGEIFASINQKD 355
Query: 361 GMVVFNDNPQRFNNPLTFAQIESNIRACMHLDGKFQAMEEEILVNPLYVKKAASPSDEET 420
GMV F+D+P+++NNP I+ + C+ LD + +AM++EI VNP +V+K+ ++++
Sbjct: 356 GMVCFHDSPEKYNNPAMLHNIDQEMLRCIDLDDRLKAMDQEITVNPQFVQKSMGSQEDDS 415
Query: 421 GSSKP 425
G SKP
Sbjct: 416 G-SKP 419
>sp|Q8SYG2|CSN3_DROME COP9 signalosome complex subunit 3 OS=Drosophila melanogaster
GN=CSN3 PE=2 SV=2
Length = 445
Score = 417 bits (1072), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/440 (49%), Positives = 299/440 (67%), Gaps = 19/440 (4%)
Query: 1 MATALEQFVNNVRQLSAQGSFRELTEIIQKSMDVLTKYGQHLDNVLETLETFQHSLGILA 60
M +ALE +VN VR LSA GS+REL E + +S+ +L + LDNVLETL+ QHSLG+L
Sbjct: 1 MGSALENYVNQVRTLSASGSYRELAEELPESLSLLARNWSILDNVLETLDMQQHSLGVLY 60
Query: 61 ILSAKLTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLK 120
+L AKL S++T + +L +++F+ N +Q+R+A + E H +T+ V+
Sbjct: 61 VLLAKL---HSASTANPEPVQLIQLMRDFVQRNNNEQLRYAVCAFYETCHLFTEFVVQKN 117
Query: 121 TPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQ 180
GI +I AI +I+ ++QLT +H+DLC L L A+NF L +LD DIT I+ +
Sbjct: 118 LSILGIRIISRAIDQIRQLETQLTPIHADLCLLSLKAKNFSVVLPYLDADITDISTVAAE 177
Query: 181 F---------------DTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIM 225
D KYFL YFYYGGMIY A+KNYERALYFFEV ITTPA+A+SHIM
Sbjct: 178 CKTQQQQQSQHADANNDAKYFLLYFYYGGMIYTAVKNYERALYFFEVCITTPAMAMSHIM 237
Query: 226 LEGYKKYLLIYLIVYGKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLL 285
LE YKK+L++ LIV GK +PKN +Q I R++KP++ Y DLV+VY N++S EL+ ++L
Sbjct: 238 LEAYKKFLMVSLIVEGKIAYIPKN-TQVIGRFMKPMANHYHDLVNVYANSSSEELRIIIL 296
Query: 286 KYADVFSRDENTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILK 345
KY++ F+RD N GL KQ+ SLYK NI+RLTKTFLTLSL+DVASRVQL + V+AE YIL
Sbjct: 297 KYSEAFTRDNNMGLAKQVATSLYKRNIQRLTKTFLTLSLSDVASRVQLASAVEAERYILN 356
Query: 346 MISQNEIYATINKKDGMVVFNDNPQRFNNPLTFAQIESNIRACMHLDGKFQAMEEEILVN 405
MI EIYA+IN+KDGMV+F D+P+++N+P F +++NI + + MEEEI++N
Sbjct: 357 MIKSGEIYASINQKDGMVLFKDDPEKYNSPEMFLNVQNNITHVLDQVRQINKMEEEIILN 416
Query: 406 PLYVKKAASPSDEETGSSKP 425
P+YVKKA D++ S P
Sbjct: 417 PMYVKKALGSQDDDLTSQHP 436
>sp|Q54E53|CSN3_DICDI COP9 signalosome complex subunit 3 OS=Dictyostelium discoideum
GN=csn3 PE=1 SV=1
Length = 418
Score = 254 bits (650), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 223/379 (58%), Gaps = 11/379 (2%)
Query: 40 QH--LDNVLETLETFQHSLGILAILSAKLTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQ 97
QH LDN+L L+ HSLG L +L AK S+ G + Q F CN +Q
Sbjct: 29 QHVSLDNILGALDVRNHSLGQLLVLKAK-----GSDQGKN-RSVFIDQCNNFFRNCNVEQ 82
Query: 98 IRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQTSD--SQLTSLHSDLCQLCL 155
+R A ++LS YT+ + +LK P RG+ +++ A+ + + + LT +H+D QLC+
Sbjct: 83 VRLAPAQLSQLSKFYTEALYELKQPIRGVAVLKDALNILSDNKPTTTLTPIHTDFLQLCI 142
Query: 156 LAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT 215
L++ + AL ++ +IT I E K L YFYY G+I+ A K Y++A+ F+ +IT
Sbjct: 143 LSKCYHQALPLIESNITHINPEQSSIAIKDILCYFYYSGIIFTAFKKYKKAIEAFKFVIT 202
Query: 216 TPALAVSHIMLEGYKKYLLIYLIVYGKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNN 275
PA A+S I +E YKKYL++YLI +G + PK + R IK +PY + V ++N
Sbjct: 203 APASALSAITVEAYKKYLIVYLIQFGSVQHFPKCTPAVVQRNIKSHCKPYTEFVQSFSNG 262
Query: 276 NSTELQHLLLKYADVFSRDENTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGT 335
N ++ + A+ F +D N GL K + S Y+ NIK+LT+TF+TLS+ D+A +V L
Sbjct: 263 NINDIMNKASSGAEFFQKDSNWGLVKLSIKSTYRRNIKKLTQTFMTLSINDIAEKVSL-P 321
Query: 336 PVQAEIYILKMISQNEIYATINKKDGMVVFNDNPQRFNNPLTFAQIESNIRACMHLDGKF 395
+AE ++LKMI + EI+ATIN+KDGMV F++ + F+ P ++ NI + L+ K
Sbjct: 322 KAKAEQFVLKMIEEGEIFATINQKDGMVTFDECFEDFSGPTILNDLDRNINNIVGLESKI 381
Query: 396 QAMEEEILVNPLYVKKAAS 414
+ M+E+I ++ Y+KK AS
Sbjct: 382 KEMDEKISLSNNYLKKLAS 400
>sp|Q8W575|CSN3_ARATH COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3
PE=1 SV=2
Length = 429
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 209/371 (56%), Gaps = 11/371 (2%)
Query: 44 NVLETLETFQHSLGILAILSAKLTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAGD 103
+ L+ L+ +HSLG L L LT S + Y+ + I F+N C+ QIR A
Sbjct: 48 STLDQLDASKHSLGYLYFLEV-LTCGPVSKEKAAYEIPI---IARFINSCDAGQIRLASY 103
Query: 104 LYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPA 163
+ L V+ L P RG+ + A++K+Q S +LT+LH D+ QLCL A+++K
Sbjct: 104 KFVSLCKILKDHVIALGDPLRGVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSG 163
Query: 164 LEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSH 223
L DI I + F Y YYGGMI + LK +++AL ++T P V+
Sbjct: 164 FSILSDDIVEIDQ------PRDFFLYSYYGGMICIGLKRFQKALELLYNVVTAPMHQVNA 217
Query: 224 IMLEGYKKYLLIYLIVYGKAPN-LPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQH 282
I LE YKKY+L+ LI G+ N LPK S A R K + PY++L + Y + EL+
Sbjct: 218 IALEAYKKYILVSLIHNGQFTNTLPKCASTAAQRSFKNYTGPYIELGNCYNDGKIGELEA 277
Query: 283 LLLKYADVFSRDENTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIY 342
L++ F D+N GL KQ V+SLYK NI RLT+ +LTLSL D+A+ VQLG +AE++
Sbjct: 278 LVVARNAEFEEDKNLGLVKQAVSSLYKRNILRLTQKYLTLSLQDIANMVQLGNAKEAEMH 337
Query: 343 ILKMISQNEIYATINKKDGMVVFNDNPQRFNNPLTFAQIESNIRACMHLDGKFQAMEEEI 402
+L+MI +I+A IN+KDGMV F ++P+++ + ++S I+ + L AM+E +
Sbjct: 338 VLQMIQDGQIHALINQKDGMVRFLEDPEQYKSSEMIEIMDSVIQRTIGLSKNLLAMDESL 397
Query: 403 LVNPLYVKKAA 413
+PLY+ K
Sbjct: 398 SCDPLYLGKVG 408
>sp|Q5B0Y2|CSN3_EMENI COP9 signalosome complex subunit 3 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnC PE=1 SV=2
Length = 496
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 171/355 (48%), Gaps = 36/355 (10%)
Query: 42 LDNVLETLETFQHSLGILAILSAKLTLL---SSSNTGSEYQE--ELFSQIQEFLNMCNPD 96
++ LE + HSL L +L ++ L ++ ++ Q L++Q +FL +P
Sbjct: 49 INGYLEAISPAVHSLSYLYLLRIRIQQLQEKTAVGVPNDLQPGGTLWNQTVKFLRSFDPI 108
Query: 97 QIRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLL 156
QIR+ G + EL + + P + +I+ A++++ T+ TSLH L +L LL
Sbjct: 109 QIRYVGHEWRELVDSVANAALSVSKPILAVKMIRDALERLNTA-GVFTSLHLMLVKLALL 167
Query: 157 AQNFKPALEFLD--------------VDITTIANEGPQF----DTKYF---------LQY 189
+ ++ L LD I + P D+ F LQ+
Sbjct: 168 SSSYTYVLPVLDKLLCHFPSDTQNAHAGILLCSEHEPSTVFFTDSSGFSANLTYRDHLQF 227
Query: 190 FYYGGMIYLALKNYERALYFFEVIITTP-ALAVSHIMLEGYKKYLLIYLIVYGKAPNLPK 248
+ Y GM+Y+ALK +++A + ++I+ P A +VS IM+E YKK++L L+ +GK ++P
Sbjct: 228 YMYSGMVYMALKKWDQASHCLGIVISAPTANSVSKIMVEAYKKWVLANLLGHGKLFSVPN 287
Query: 249 NVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLTKQIVASLY 308
V+ + R + LS+PY+ L + + L+ + ++ D+N+GL Q+ +
Sbjct: 288 LVAPHVTRVYQSLSKPYISLAEAFEKRDFQRLRTEISLGQTIWRADKNSGLVYQVFEAYD 347
Query: 309 KNNIKRLTKTFLTLSLADVASRVQLGTPVQAEI--YILKMISQNEIYATINKKDG 361
K I +L KTF L++ DV R + +I +++ ++ E+ A ++ G
Sbjct: 348 KFLIIKLGKTFSALTMPDVLQRASSCSKGSRDIEEFVVSLVMTKELRAKLSHSPG 402
>sp|Q9N425|CSN3_CAEEL COP9 signalosome complex subunit 3 OS=Caenorhabditis elegans
GN=csn-3 PE=1 SV=4
Length = 501
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 44/263 (16%)
Query: 143 LTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEG------------------------ 178
LTS H L L +++ F+D+ + IANE
Sbjct: 179 LTSAHGVLFACALETKDYASVEPFIDLHVDEIANENCIQDQEKSDNRERDFGDVFLGRMK 238
Query: 179 -------------PQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIM 225
P KY L Y Y G I + LK +E AL+ E+ + PA +V
Sbjct: 239 KGAAFGSQPVAHNPHLHPKYVLDYLYNGACILIELKRFEDALFLLEICVGMPAFSVQDQH 298
Query: 226 LEGYKKYLLIYLIVYGKAPNLPKNVSQAICRYIKPLSQPYLDLVSV---YTNNNSTELQH 282
L+ +KKY+LI LI+ GK ++ +N ++ R+ K S Y + ++N + ++
Sbjct: 299 LDSFKKYVLISLILKGKV-DVTENGDKSAIRHFKTKSPEYKQFSEIRFSRSSNTHSAVES 357
Query: 283 LLLKYADVFSRDENTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIY 342
L+ D +D NT + K +V + K I LT+ F ++ ++++ L + Q
Sbjct: 358 LVKSAKDRLRKDGNTEIAKYLVVEMKKKTIMSLTRMFTSIRISEIEELAFLKSRDQVTEL 417
Query: 343 ILKMISQNEIYATINKKDGMVVF 365
I +++ + I I DG +VF
Sbjct: 418 IGQLVEEQRITVRI---DGDMVF 437
>sp|Q7S7G7|CSN3_NEUCR COP9 signalosome complex subunit 3 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-3 PE=1 SV=2
Length = 497
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 173/408 (42%), Gaps = 45/408 (11%)
Query: 43 DNVLETLETFQHSLGILAILSAKLTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAG 102
D++L+ + +SL L IL + L S T + E L S + +F + QIR G
Sbjct: 49 DDILKHVNPAVYSLSYLMIL--EFLLQSPGWTSQQAHESLASYMAQFFLQFDARQIRCKG 106
Query: 103 DLYAE-LSHQYTKTVMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFK 161
+++ L Y++ L + L+ A+ ++ S S +TS H +L +L N
Sbjct: 107 STWSDVLKEAYSER--GLFPASVAVELVTAALLRLDPSGSIITSHHCNLVELAYNTGNVG 164
Query: 162 PALEFLDVDITTIANEG-----PQFD--------------------TKYFLQYFYYGGMI 196
L ++ I + +G P D + LQY + G+
Sbjct: 165 ALLPLIEKPIIYMPAKGMSTAQPLCDMSLPPPAYINPDSQLTDALTSAAVLQYDFLCGLC 224
Query: 197 YLALKNYERALYFFEVIITTPAL--AVSHIMLEGYKKYLLIYLIVYGKAPNLPKNVSQAI 254
++ + +++A FE +T P S IM E Y K++L+ L++ GK P LP+ SQA
Sbjct: 225 FIERRMWQQAFDAFERCVTYPTRDGGCSKIMTEAYNKWILVGLLLTGKPPTLPETTSQAA 284
Query: 255 CRYIKPLSQPYLDLVSVYTNNNSTEL-QHLLLKYADVFSRDENTGLTKQIVASLYKNNIK 313
+ +PY + + + +L + + +++ + N L K ++A + I
Sbjct: 285 KKIFATQGKPYKLFAQAFKSETAGDLVREFEVINSELLPNEGNVELAKLVLAHYQRWQII 344
Query: 314 RLTKTFLTLSLADVASRVQ---LGTP---VQA-EIYILKMISQNEIYATINK-KDGM--- 362
L + +SL + R Q G P V+A + + MI+ + I + KDG
Sbjct: 345 NLRNIYTNISLEKIQERTQSAETGAPLPTVEAVDQLVQSMIADGSLQGAIERPKDGSPAY 404
Query: 363 VVFNDNPQRFNNPLTF-AQIESNIRACMHLDGKFQAMEEEILVNPLYV 409
+ F +P + + + F AQ+ ++ L+ +A + + N Y+
Sbjct: 405 LTFLSSPAQGMSEVEFSAQVNKVMQGIKALEPIIEATNKRLASNREYI 452
>sp|P14685|PSMD3_MOUSE 26S proteasome non-ATPase regulatory subunit 3 OS=Mus musculus
GN=Psmd3 PE=1 SV=3
Length = 530
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 180 QFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYK----KYLLI 235
Q + + +Y YY G I Y A + A H + G+K K L++
Sbjct: 275 QANNNEWARYLYYTGRIKAIQLEYSEAR---RTMTNALRKAPQHTAV-GFKQTVHKLLIV 330
Query: 236 YLIVYGKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDE 295
++ G+ P+ + ++ R + PY L N + +L ++ + F D
Sbjct: 331 VELLLGEIPDRLQFRQPSLKRSL----MPYFLLTQAVRTGNLAKFNQVLDQFGEKFQTDG 386
Query: 296 NTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYAT 355
L ++ ++ K ++ ++ ++ +SLAD+A ++QL +P AE + K I I A+
Sbjct: 387 TYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEAS 446
Query: 356 INKKDGMV 363
IN + G V
Sbjct: 447 INHEKGYV 454
>sp|O43242|PSMD3_HUMAN 26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens
GN=PSMD3 PE=1 SV=2
Length = 534
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 12/182 (6%)
Query: 186 FLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYK----KYLLIYLIVYG 241
+ +Y YY G I Y A + A H + G+K K L++ ++ G
Sbjct: 285 WARYLYYTGRIKAIQLEYSEAR---RTMTNALRKAPQHTAV-GFKQTVHKLLIVVELLLG 340
Query: 242 KAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLTK 301
+ P+ + ++ R + PY L N + +L ++ + F D L
Sbjct: 341 EIPDRLQFRQPSLKRSL----MPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLII 396
Query: 302 QIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361
++ ++ K ++ ++ ++ +SLAD+A ++QL +P AE + K I I A+IN + G
Sbjct: 397 RLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKG 456
Query: 362 MV 363
V
Sbjct: 457 YV 458
>sp|Q2KJ46|PSMD3_BOVIN 26S proteasome non-ATPase regulatory subunit 3 OS=Bos taurus
GN=PSMD3 PE=2 SV=1
Length = 534
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 180 QFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYK----KYLLI 235
Q + + +Y YY G I Y A + A H + G+K K L++
Sbjct: 279 QANNNEWARYLYYTGRIKAIQLEYSEAR---RTMTNALRKAPQHTAV-GFKQTVHKLLIV 334
Query: 236 YLIVYGKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDE 295
++ G+ P+ + ++ R + PY L N + +L ++ + F D
Sbjct: 335 VELLLGEIPDRLQFRQPSLKRSL----MPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADG 390
Query: 296 NTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYAT 355
L ++ ++ K ++ ++ ++ +SLAD+A ++QL +P AE + K I I A+
Sbjct: 391 TYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEAS 450
Query: 356 INKKDGMV 363
IN + G V
Sbjct: 451 INHEKGYV 458
>sp|Q1ZXD3|PSMD3_DICDI 26S proteasome non-ATPase regulatory subunit 3 OS=Dictyostelium
discoideum GN=psmD3 PE=1 SV=1
Length = 504
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 84/207 (40%), Gaps = 5/207 (2%)
Query: 186 FLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVYGKAPN 245
F +YFYY G I Y + F I + K L I ++ G+ P
Sbjct: 253 FARYFYYQGRIRAIQLEYAESFKFLTQAIRKAPQNTAGGFRRTVYKLLSIVQLLMGEIPE 312
Query: 246 LPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLTKQIVA 305
SQ + +K +PY L + L + +D+F D+ L +++ +
Sbjct: 313 -RNTFSQ---KQLKIALKPYFHLTEAVRVGDLGSFNQALEQNSDIFKSDQTFTLVQRLRS 368
Query: 306 SLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYIL-KMISQNEIYATINKKDGMVV 364
++ K +K+L + +S D+ ++++ Q ++I+ K I I ATIN + G +
Sbjct: 369 NVIKAGLKKLNTAYSRISFNDICTKLKFDGTTQDIMFIIAKTIKDGVIDATINYEGGYLQ 428
Query: 365 FNDNPQRFNNPLTFAQIESNIRACMHL 391
+N ++ + I C+ +
Sbjct: 429 SRENIDAYSTQEPLHAFSNRIDICLKI 455
>sp|Q06364|PSMD3_DAUCA Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus
carota GN=21D7 PE=1 SV=2
Length = 489
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 102/231 (44%), Gaps = 29/231 (12%)
Query: 176 NEGPQFDT---KYFLQYFYYGGMIY-LALKNYERALYFFEVIITTPALAVSHIMLEGYK- 230
++ P+F+ + F +Y +Y G I + L+ + + P A+ G++
Sbjct: 227 SKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESXLQAARKAPVAAL------GFRV 280
Query: 231 ---KYLLIYLIVYGKAPN----LPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHL 283
K+ +I ++ G+ P + K + +A+ +PY L + + + +
Sbjct: 281 QCNKWAVIVRLLLGEIPERTVFMQKGMEKAL--------RPYFXLTNAVRIGDLELFRXV 332
Query: 284 LLKYADVFSRDENTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTP---VQAE 340
K+A F+ D L ++ ++ + ++ ++ ++ +SL DVA +++L +P AE
Sbjct: 333 ADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAE 392
Query: 341 IYILKMISQNEIYATINKKDGMVVFNDNPQRFNNPLTFAQIESNIRACMHL 391
+ K I I ATI+ +G +V + ++ A S I C+++
Sbjct: 393 SIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNM 443
>sp|Q9LNU4|PSD31_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3a
OS=Arabidopsis thaliana GN=EMB2719 PE=1 SV=3
Length = 488
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 102/226 (45%), Gaps = 15/226 (6%)
Query: 174 IANEGPQFDT---KYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYK 230
+ ++ P+F+ + F +Y +Y G I Y A +A ++ K
Sbjct: 224 LRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRIQCNK 283
Query: 231 KYLLIYLIVYGKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADV 290
+L+ L++ G+ P + + + ++P Y +L + + + + K+ D
Sbjct: 284 WAILVRLLL-GEIPERSIFTQKGMEKALRP----YFELTNAVRIGDLELFRTVQEKFLDT 338
Query: 291 FSRDENTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGT--PV-QAEIYILKMI 347
F++D L ++ ++ + ++ ++ ++ +SL DVA +++L + PV AE + K I
Sbjct: 339 FAQDRTHNLIVRLRHNVIRTGLRNISISYSRISLPDVAKKLRLNSENPVADAESIVAKAI 398
Query: 348 SQNEIYATINKKDGMVVFNDNPQRF--NNPLTFAQIESNIRACMHL 391
I ATI+ K+G +V + + N P T S I C+++
Sbjct: 399 RDGAIDATIDHKNGCMVSKETGDIYSTNEPQT--AFNSRIAFCLNM 442
>sp|Q9UT51|CSN3_SCHPO COP9 signalosome complex subunit 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn3 PE=3 SV=2
Length = 338
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 16/186 (8%)
Query: 187 LQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVYGKAPNL 246
LQY Y L + + A ++ I+ P ++ E Y +LL+Y+I GK L
Sbjct: 119 LQYCMYAAYHCLGNNDLDSAKVWYFSILYIPTTTLTSFHEEAYYSFLLLYIITTGKKFQL 178
Query: 247 PKNVSQAICRYIKPLSQ---PYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLTKQI 303
S + PL + PY + + Y + +T L+ ++ ++ F +D +T
Sbjct: 179 DSATSSNVL----PLKRHMVPYEEFLDAYLKDVNT-LRTVIKEHWSRFLKDNSTAFILFA 233
Query: 304 VASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKM-------ISQNEIYATI 356
+ + +K+ KTF +L L +A ++ + V EI I K ++ EI+ T
Sbjct: 234 LEVYPMHRLKKWRKTFSSLKLEYIAKQLAISQDVAKEI-IQKFDNKTNFTVANGEIFLTF 292
Query: 357 NKKDGM 362
N D +
Sbjct: 293 NALDDV 298
>sp|P93768|PSMD3_TOBAC Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Nicotiana tabacum GN=21D7 PE=2 SV=1
Length = 488
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 94/206 (45%), Gaps = 29/206 (14%)
Query: 174 IANEGPQFDT---KYFLQYFYYGGMIY-LALKNYERALYFFEVIITTPALAVSHIMLEGY 229
+ ++ P+F+ + F +Y +Y G I + L+ + + P A+ G+
Sbjct: 224 LRSKAPRFEAHSNQQFSRYLFYLGKIRTIQLEYTDAKESLLQAARKAPQAAL------GF 277
Query: 230 K----KYLLIYLIVYGKAPN----LPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQ 281
+ K+ +I ++ G+ P + K + +A+ +PY +L + + +
Sbjct: 278 RVQCNKWAIIVRLLLGEIPERTVFMQKGMEKAL--------RPYFELTNAVRIGDLELFR 329
Query: 282 HLLLKYADVFSRDENTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTP---VQ 338
+ K++ FS D L ++ ++ + ++ ++ ++ +SL DVA +++L +P
Sbjct: 330 KVAEKFSSTFSSDGTNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSPNPVAD 389
Query: 339 AEIYILKMISQNEIYATINKKDGMVV 364
AE + K I I AT++ +G +V
Sbjct: 390 AESIVSKAIRDGAIDATLDHANGWMV 415
>sp|Q9LQR8|PSD32_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3b
OS=Arabidopsis thaliana GN=At1g75990 PE=2 SV=2
Length = 487
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 104/231 (45%), Gaps = 25/231 (10%)
Query: 174 IANEGPQFDT---KYFLQYFYYGGMIY-LALKNYERALYFFEVIITTPALAVSHIMLEGY 229
+ ++ P+F+ + F +Y +Y G I + L+ + + P ++ G+
Sbjct: 223 LRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVASL------GF 276
Query: 230 K----KYLLIYLIVYGKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLL 285
+ K+ +I ++ G+ P + + + ++P Y +L + + +
Sbjct: 277 RIQCNKWAIIVRLLLGEIPERSIFTQKGMEKTLRP----YFELTNAVRIGDLELFGKIQE 332
Query: 286 KYADVFSRDENTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGT--PV-QAEIY 342
K+A F+ D L ++ ++ + ++ ++ ++ +SL DVA +++L + PV AE
Sbjct: 333 KFAKTFAEDRTHNLIVRLRHNVIRTGLRNISISYSRISLQDVAQKLRLNSANPVADAESI 392
Query: 343 ILKMISQNEIYATINKKDGMVVFNDNPQRF--NNPLTFAQIESNIRACMHL 391
+ K I I ATI+ K+G +V + + N P T S I C+++
Sbjct: 393 VAKAIRDGAIDATIDHKNGCMVSKETGDIYSTNEPQT--AFNSRIAFCLNM 441
>sp|P68358|CSN3_BRAOL COP9 signalosome complex subunit 3 (Fragments) OS=Brassica oleracea
GN=CSN3 PE=1 SV=1
Length = 55
Score = 41.6 bits (96), Expect = 0.013, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 29/35 (82%)
Query: 338 QAEIYILKMISQNEIYATINKKDGMVVFNDNPQRF 372
+AE+++L+MI +I+A IN+KDGMV F ++P+++
Sbjct: 20 EAEMHVLQMIQDGQIHALINQKDGMVRFLEDPEQY 54
>sp|O61470|PSMD3_ANOGA Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles gambiae GN=Dox-A2 PE=3 SV=2
Length = 496
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 44/98 (44%)
Query: 264 PYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLTKQIVASLYKNNIKRLTKTFLTLS 323
PY L N +L+ + + F +D L ++ ++ K I+ + + +S
Sbjct: 322 PYFQLTQAVRMGNLQRFGEVLVNFGEQFRQDHTFTLIIRLRHNVIKTAIRSIGLAYSRIS 381
Query: 324 LADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361
D+A ++ L +P AE + K I I AT++ + G
Sbjct: 382 PQDIARKLGLDSPEDAEFIVAKAIRDGVIEATLDPEKG 419
>sp|Q9U5Z8|PSMD3_ANOST Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles stephensi GN=DOXA2 PE=3 SV=1
Length = 500
Score = 38.5 bits (88), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 6/175 (3%)
Query: 188 QYFYYGGMIYLALKNYERA-LYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVYGKAPNL 246
++ YY G I A Y A + + P A + +K +++ ++ G P
Sbjct: 254 RFLYYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFR-QTVQKLVIVVELLLGDIPER 312
Query: 247 PKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLTKQIVAS 306
K QA R + L PY L N +L + + F +D L ++ +
Sbjct: 313 -KVFRQAALR--RSLG-PYFQLTQAVRMGNLQRFGEVLENFGEQFRQDHTFTLIIRLRHN 368
Query: 307 LYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361
+ K I+ + + +S D+A ++ L +P AE + K I I AT++ + G
Sbjct: 369 VIKTAIRSIGLAYSRISPQDIARKLGLDSPEDAEFIVAKAIRDGVIDATLDPEKG 423
>sp|P40016|RPN3_YEAST 26S proteasome regulatory subunit RPN3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN3 PE=1 SV=5
Length = 523
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/236 (19%), Positives = 96/236 (40%), Gaps = 30/236 (12%)
Query: 157 AQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITT 216
A +F LE+ D+++ + +YF FY + + L Y I
Sbjct: 250 ASDFISKLEYPHTDVSS------SLEARYF---FYLSKINAIQLDYSTANEYIIAAIRKA 300
Query: 217 PALAVSHIMLEGYKKYLLIYLIVYGKAPNLP----KNVSQAICRYIKPLSQPYLDLVSVY 272
P + S L+ K ++ G P L N+ +++ PY L
Sbjct: 301 PHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLL--------PYYHLTKAV 352
Query: 273 TNNNSTELQHLLLKYADVFSRDENTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQ 332
+ + + KY + +D+ L ++ +++ K I+ ++ T+ +SL D+ ++
Sbjct: 353 KLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLN 412
Query: 333 LGTPVQAEIYILKMISQNEIYATINKKDGMV-------VFN-DNPQR-FNNPLTFA 379
L + E + + I I A IN +DG + +++ ++PQ+ F+ + FA
Sbjct: 413 LDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFA 468
>sp|F4K7D5|FLS6_ARATH Probable flavonol synthase 6 OS=Arabidopsis thaliana GN=FLS6 PE=3
SV=1
Length = 293
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 100 HAGDLYAELSHQYTKTVMDLKTPQRGIPLIQ--TAIKKIQTSDSQLTS-LHSDLCQLCLL 156
++GD + E++ +YT+ V +L G Q I SDS + + H+D C L LL
Sbjct: 128 YSGDGFREVTKEYTRNVTNLTEKIVGGDKAQYVMRINYYPPSDSAIGAPAHTDFCGLALL 187
Query: 157 AQNFKPALEFLDVD 170
N P L+ D
Sbjct: 188 VSNEVPGLQVFKDD 201
>sp|Q8ERF4|ROCA_OCEIH 1-pyrroline-5-carboxylate dehydrogenase OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=rocA PE=3 SV=1
Length = 515
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 19/98 (19%)
Query: 326 DVASRVQLGTPVQAEIYILKMISQNEI-----YATINKKDGMVVF----NDNPQRFNNPL 376
++A + +G P + +Y+ +++Q + Y + K++G +VF +DN F +P
Sbjct: 342 ELAKTLTVGNPTEDNVYMASVVNQKQFDKIKDYIEVGKQEGELVFGGETDDNKGFFVHPT 401
Query: 377 TFAQIESNIRACMHLDGKFQAMEEEILVNPLYVKKAAS 414
F LD K + M+EEI + KA S
Sbjct: 402 IFKD----------LDPKARIMQEEIFGPVVAFSKAKS 429
>sp|Q7UF53|ISPT_RHOBA Isoprenyl transferase OS=Rhodopirellula baltica (strain SH1)
GN=uppS PE=3 SV=1
Length = 244
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 270 SVYTNNNSTELQHLLLKYADVFSRDENTGLTKQIVASLY--KNNIKRLTKTFL-----TL 322
+V NN TEL + D RDE T +T+Q+ + + +I +T++ + T
Sbjct: 123 AVSENNTGTEL----VLAVDYGGRDELTRMTRQLAQQVRDGERSIDEITESLVDESLDTA 178
Query: 323 SLADVASRVQLGTPVQAEIYILKMISQNEIYAT 355
L DV ++ G ++ Y+L IS E+Y T
Sbjct: 179 GLPDVDLMIRTGGDIRISNYLLWQISYAELYFT 211
>sp|Q5RI75|RASEF_MOUSE Ras and EF-hand domain-containing protein homolog OS=Mus musculus
GN=Rasef PE=2 SV=1
Length = 627
Score = 32.3 bits (72), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 76 SEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKK 135
SE +EE+ +IQ N D+ R A + +L QY V DL+ + + ++ ++
Sbjct: 92 SELEEEMDQRIQAVENESRKDEKRKAEEALTDLRRQYETEVGDLQVTIKRLKKLEEQSRQ 151
Query: 136 IQTSDSQLTSLHSDLCQLCLLAQNFKPAL 164
I + +T+L + L + Q K L
Sbjct: 152 I-SQKQDVTALKKQIHDLTMENQKLKKEL 179
>sp|B9SVG9|RBR_RICCO Retinoblastoma-related protein OS=Ricinus communis GN=RBR PE=2 SV=1
Length = 1020
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 30/172 (17%)
Query: 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYER 205
L ++ L +L++++K A + ++ +T+ AN Q T Y Y +G +++LAL+ +
Sbjct: 153 LQANFVHLSILSRHYKRA--YRELFLTSDANVDKQSATAYMSDYHRFGWLLFLALRVH-- 208
Query: 206 ALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVYGKAPNLPKNVSQAICRYIKPLSQPY 265
A F+ ++T VS + + L+I++ V + NL N SQ R++K
Sbjct: 209 AFSRFKDLVTCTNGLVSVLAI------LIIHVPVRFRNFNL--NDSQ---RFVKK-GDKG 256
Query: 266 LDLVSVYTNNNST---ELQHLLLK----YADVFSRDENTGLTKQIVASLYKN 310
+DL++ N T EL+ + K AD+ + K +AS YKN
Sbjct: 257 VDLLASLCNKYDTSEDELRKTMEKTNNLIADILKK-------KPHMASEYKN 301
>sp|Q54S04|RPB4_DICDI DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium
discoideum GN=polr2d PE=3 SV=1
Length = 155
Score = 32.0 bits (71), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 268 LVSVYTN--NNSTELQHLLLKYADVFSRDENTGLTKQIVASLYKNNIKRLTKTFLTLSLA 325
L+ +Y N N+ H L YA+ FSR +N KQ+ +L K N++ F SLA
Sbjct: 61 LIHLYYNSINDIIRTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEE----FEIASLA 116
Query: 326 DVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFN 366
++ ++ ++ I LK + +E+ A +++ + FN
Sbjct: 117 NLCP--EISDEAKSLIPSLKKMEDDELQAILDELSNLRKFN 155
>sp|P71363|VAPC2_HAEIN Probable ribonuclease VapC2 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=vapC2 PE=3 SV=1
Length = 132
Score = 32.0 bits (71), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 46 LETLETFQHSLGILAILSAKLTLLSSSNTGSEYQEELFSQIQEFLNMCN-----PDQIRH 100
LE L F + G + + S + L SEY E + I++FL+ P H
Sbjct: 20 LEILSRFNQNAGKMCVSSITVAELYYGAEKSEYPERNIAVIEDFLSRLTILDYQPKHAAH 79
Query: 101 AGDLYAELSHQ 111
G++ AELS Q
Sbjct: 80 FGNIKAELSKQ 90
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,171,732
Number of Sequences: 539616
Number of extensions: 6332669
Number of successful extensions: 17749
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 17686
Number of HSP's gapped (non-prelim): 58
length of query: 437
length of database: 191,569,459
effective HSP length: 120
effective length of query: 317
effective length of database: 126,815,539
effective search space: 40200525863
effective search space used: 40200525863
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)