Query psy9642
Match_columns 437
No_of_seqs 212 out of 712
Neff 7.2
Searched_HMMs 29240
Date Sat Aug 17 00:55:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_S RPN3, 26S proteasome re 100.0 3E-49 1E-53 410.6 13.7 350 51-416 132-498 (523)
2 4b4t_P 26S proteasome regulato 100.0 1.7E-27 5.8E-32 247.3 20.2 247 140-396 173-430 (445)
3 3t5x_A PCI domain-containing p 99.9 4.4E-27 1.5E-31 219.5 14.1 180 179-368 6-193 (203)
4 3txn_A 26S proteasome regulato 99.9 3E-24 1E-28 218.6 20.0 261 128-393 124-391 (394)
5 3t5v_B Nuclear mRNA export pro 99.9 5E-23 1.7E-27 212.9 20.6 216 146-368 178-429 (455)
6 4b4t_Q 26S proteasome regulato 99.8 2E-18 7E-23 173.8 22.6 253 114-370 143-404 (434)
7 4b4t_R RPN7, 26S proteasome re 99.8 1.6E-18 5.4E-23 179.0 21.8 247 119-370 144-395 (429)
8 1ufm_A COP9 complex subunit 4; 99.5 4E-14 1.4E-18 113.1 7.3 70 300-370 9-78 (84)
9 4b4t_O 26S proteasome regulato 99.5 1E-12 3.5E-17 134.0 17.4 216 147-368 130-353 (393)
10 4b0z_A RPN12, 26S proteasome r 98.9 2.4E-08 8.1E-13 94.4 16.0 202 152-366 15-227 (229)
11 3chm_A COP9 signalosome comple 98.2 1.2E-05 4E-10 72.3 11.1 97 262-367 59-156 (169)
12 2xev_A YBGF; tetratricopeptide 95.7 0.11 3.9E-06 41.5 11.1 94 119-219 15-109 (129)
13 3ro2_A PINS homolog, G-protein 95.4 0.84 2.9E-05 41.8 17.6 111 118-231 17-128 (338)
14 3k9i_A BH0479 protein; putativ 95.4 0.055 1.9E-06 43.4 8.2 90 120-219 4-94 (117)
15 1qqe_A Vesicular transport pro 95.4 0.64 2.2E-05 43.6 16.8 206 78-297 55-273 (292)
16 2vgx_A Chaperone SYCD; alterna 95.1 0.26 8.7E-06 41.7 11.8 90 117-219 32-122 (148)
17 2xcb_A PCRH, regulatory protei 95.0 0.26 9E-06 40.8 11.4 90 118-220 30-120 (142)
18 2dba_A Smooth muscle cell asso 95.0 0.11 3.9E-06 42.2 9.0 91 119-219 41-132 (148)
19 3sf4_A G-protein-signaling mod 94.9 1.8 6.2E-05 41.1 18.8 110 117-229 20-130 (406)
20 3sz7_A HSC70 cochaperone (SGT) 94.9 0.26 9E-06 41.7 11.3 89 119-220 24-113 (164)
21 3rkv_A Putative peptidylprolyl 94.9 0.084 2.9E-06 44.8 8.1 68 143-219 62-130 (162)
22 2qfc_A PLCR protein; TPR, HTH, 94.9 1.4 4.6E-05 41.2 17.4 114 117-233 166-283 (293)
23 3gyz_A Chaperone protein IPGC; 94.9 0.2 6.8E-06 43.1 10.5 128 78-219 7-137 (151)
24 1elr_A TPR2A-domain of HOP; HO 94.9 0.46 1.6E-05 37.2 12.1 92 119-216 17-108 (131)
25 3ro3_A PINS homolog, G-protein 94.8 0.77 2.6E-05 37.0 13.6 130 78-216 27-158 (164)
26 3ro3_A PINS homolog, G-protein 94.7 0.48 1.6E-05 38.4 12.3 95 119-216 22-118 (164)
27 4gcn_A Protein STI-1; structur 94.5 0.28 9.6E-06 40.2 10.3 94 119-218 21-115 (127)
28 3gw4_A Uncharacterized protein 94.5 1.1 3.7E-05 38.4 14.6 133 78-219 44-179 (203)
29 3qky_A Outer membrane assembly 94.5 0.49 1.7E-05 43.1 13.0 94 119-219 28-130 (261)
30 1elw_A TPR1-domain of HOP; HOP 94.4 0.4 1.4E-05 36.8 10.4 88 119-219 17-105 (118)
31 2fbn_A 70 kDa peptidylprolyl i 94.3 0.32 1.1E-05 42.5 10.9 92 119-219 51-155 (198)
32 4gco_A Protein STI-1; structur 94.2 0.26 9.1E-06 40.4 9.4 88 119-219 26-114 (126)
33 2vyi_A SGTA protein; chaperone 94.2 0.97 3.3E-05 35.1 12.6 88 119-219 25-113 (131)
34 3upv_A Heat shock protein STI1 94.2 0.28 9.5E-06 39.3 9.4 86 119-217 17-103 (126)
35 1hxi_A PEX5, peroxisome target 94.1 0.32 1.1E-05 39.5 9.7 88 118-218 29-117 (121)
36 3q15_A PSP28, response regulat 94.0 4.7 0.00016 38.8 22.4 97 117-216 152-251 (378)
37 4a1s_A PINS, partner of inscut 93.9 1.4 4.8E-05 42.4 15.7 114 117-233 59-173 (411)
38 3ma5_A Tetratricopeptide repea 93.7 0.19 6.5E-06 39.2 7.3 65 146-219 9-74 (100)
39 2l6j_A TPR repeat-containing p 93.7 0.39 1.3E-05 36.9 9.1 77 146-231 6-83 (111)
40 3ieg_A DNAJ homolog subfamily 93.7 0.28 9.5E-06 45.9 9.7 96 115-219 243-339 (359)
41 2e2e_A Formate-dependent nitri 93.7 0.7 2.4E-05 39.2 11.5 89 118-219 56-148 (177)
42 2lni_A Stress-induced-phosphop 93.6 0.29 9.8E-06 38.8 8.3 88 119-219 29-117 (133)
43 2ifu_A Gamma-SNAP; membrane fu 93.6 1.7 5.7E-05 41.0 15.1 154 117-282 87-253 (307)
44 3nf1_A KLC 1, kinesin light ch 93.5 4.1 0.00014 36.9 17.4 100 115-215 120-223 (311)
45 3q49_B STIP1 homology and U bo 93.5 0.42 1.4E-05 38.4 9.3 87 119-218 22-109 (137)
46 2kat_A Uncharacterized protein 93.4 0.31 1.1E-05 38.5 8.2 81 126-219 5-86 (115)
47 4ga2_A E3 SUMO-protein ligase 93.4 0.19 6.5E-06 42.5 7.2 68 143-219 30-98 (150)
48 3edt_B KLC 2, kinesin light ch 93.4 1 3.5E-05 40.3 12.6 102 115-216 136-281 (283)
49 3edt_B KLC 2, kinesin light ch 93.2 1.9 6.6E-05 38.4 14.3 134 78-216 61-198 (283)
50 2kc7_A BFR218_protein; tetratr 93.1 0.39 1.3E-05 36.6 8.1 62 149-219 5-68 (99)
51 3u3w_A Transcriptional activat 93.1 2.8 9.5E-05 39.0 15.6 96 119-217 168-267 (293)
52 3q15_A PSP28, response regulat 93.1 3.8 0.00013 39.5 17.0 96 119-216 114-211 (378)
53 4b4t_Q 26S proteasome regulato 93.0 2.4 8.1E-05 41.2 15.6 97 120-219 109-208 (434)
54 4b4t_T 26S proteasome regulato 92.8 0.46 1.6E-05 45.5 9.6 92 265-367 145-237 (274)
55 1na0_A Designed protein CTPR3; 92.8 0.88 3E-05 35.0 9.9 88 119-219 22-110 (125)
56 3ulq_A Response regulator aspa 92.8 7.2 0.00024 37.4 20.9 96 118-216 155-253 (383)
57 3nf1_A KLC 1, kinesin light ch 92.7 0.66 2.3E-05 42.4 10.5 102 114-215 161-306 (311)
58 1na3_A Designed protein CTPR2; 92.4 0.41 1.4E-05 35.4 7.2 66 145-219 10-76 (91)
59 1a17_A Serine/threonine protei 92.4 1.1 3.7E-05 36.9 10.6 88 119-219 26-114 (166)
60 1kt0_A FKBP51, 51 kDa FK506-bi 92.3 0.79 2.7E-05 46.5 11.2 95 116-219 278-384 (457)
61 1ihg_A Cyclophilin 40; ppiase 92.2 0.34 1.2E-05 47.9 8.2 92 119-219 236-340 (370)
62 2pzi_A Probable serine/threoni 92.0 3.3 0.00011 44.1 16.3 155 119-297 404-567 (681)
63 1p5q_A FKBP52, FK506-binding p 92.0 0.88 3E-05 44.0 10.8 94 116-219 157-263 (336)
64 2kck_A TPR repeat; tetratricop 92.0 0.49 1.7E-05 36.0 7.3 89 119-218 19-109 (112)
65 3u4t_A TPR repeat-containing p 92.0 0.38 1.3E-05 43.5 7.7 92 118-219 49-141 (272)
66 1rz4_A Eukaryotic translation 91.7 0.52 1.8E-05 43.8 8.3 91 262-365 99-189 (226)
67 4gcn_A Protein STI-1; structur 91.6 0.67 2.3E-05 37.8 8.1 65 146-219 10-75 (127)
68 2ho1_A Type 4 fimbrial biogene 91.6 4.2 0.00014 35.9 14.2 92 117-219 82-174 (252)
69 2vq2_A PILW, putative fimbrial 91.5 0.91 3.1E-05 39.2 9.4 91 116-217 86-178 (225)
70 3uq3_A Heat shock protein STI1 91.5 0.76 2.6E-05 40.7 9.0 85 118-215 151-235 (258)
71 3u3w_A Transcriptional activat 91.4 2.3 7.8E-05 39.5 12.8 99 119-219 128-229 (293)
72 4i17_A Hypothetical protein; T 91.3 1.2 4E-05 39.5 10.0 89 119-219 20-109 (228)
73 3ulq_A Response regulator aspa 91.2 11 0.00036 36.1 18.4 100 118-219 115-217 (383)
74 1hxi_A PEX5, peroxisome target 91.1 0.5 1.7E-05 38.3 6.8 65 146-219 19-84 (121)
75 3gw4_A Uncharacterized protein 91.1 2.9 9.8E-05 35.6 12.2 96 119-216 39-136 (203)
76 3upv_A Heat shock protein STI1 90.9 0.6 2E-05 37.3 7.0 65 146-219 6-71 (126)
77 3vtx_A MAMA; tetratricopeptide 90.8 0.85 2.9E-05 38.8 8.3 87 119-218 86-173 (184)
78 3hym_B Cell division cycle pro 90.7 0.93 3.2E-05 41.8 9.1 100 116-219 169-269 (330)
79 4gco_A Protein STI-1; structur 90.7 0.66 2.3E-05 37.9 7.2 68 143-219 12-80 (126)
80 3gyz_A Chaperone protein IPGC; 90.6 0.6 2E-05 40.0 7.1 65 146-219 38-103 (151)
81 2xcb_A PCRH, regulatory protei 90.6 0.66 2.3E-05 38.2 7.2 65 146-219 20-85 (142)
82 2lni_A Stress-induced-phosphop 90.5 0.76 2.6E-05 36.1 7.3 69 141-218 13-82 (133)
83 1elr_A TPR2A-domain of HOP; HO 90.5 2 6.7E-05 33.3 9.7 65 146-219 6-71 (131)
84 2ho1_A Type 4 fimbrial biogene 90.5 7.8 0.00027 34.1 14.9 87 116-215 47-133 (252)
85 2vgx_A Chaperone SYCD; alterna 90.3 0.69 2.4E-05 38.9 7.2 65 146-219 23-88 (148)
86 3hym_B Cell division cycle pro 90.3 0.94 3.2E-05 41.8 8.8 90 116-211 135-224 (330)
87 3sz7_A HSC70 cochaperone (SGT) 90.2 0.67 2.3E-05 39.0 7.1 66 145-219 12-78 (164)
88 2xev_A YBGF; tetratricopeptide 90.2 0.63 2.2E-05 36.9 6.6 67 147-219 5-72 (129)
89 3as5_A MAMA; tetratricopeptide 90.2 1.2 4.1E-05 36.9 8.6 89 118-219 88-177 (186)
90 2qfc_A PLCR protein; TPR, HTH, 90.0 3.9 0.00013 37.9 13.0 96 119-216 128-225 (293)
91 1elw_A TPR1-domain of HOP; HOP 90.0 0.94 3.2E-05 34.5 7.3 64 146-218 6-70 (118)
92 2fo7_A Synthetic consensus TPR 90.0 1.7 5.8E-05 33.6 8.9 84 119-215 48-131 (136)
93 3q49_B STIP1 homology and U bo 89.9 0.77 2.6E-05 36.8 7.0 66 145-219 10-76 (137)
94 3urz_A Uncharacterized protein 89.9 2.8 9.6E-05 36.9 11.3 99 116-219 64-190 (208)
95 3uq3_A Heat shock protein STI1 89.7 1.9 6.4E-05 38.0 10.0 61 146-215 141-201 (258)
96 3qky_A Outer membrane assembly 89.6 2.6 8.8E-05 38.2 11.0 91 122-219 113-228 (261)
97 1hh8_A P67PHOX, NCF-2, neutrop 89.4 2.4 8.2E-05 36.6 10.3 85 119-219 19-104 (213)
98 3as5_A MAMA; tetratricopeptide 89.2 2.4 8.2E-05 35.0 9.8 88 118-218 54-142 (186)
99 2fo7_A Synthetic consensus TPR 89.1 2.4 8.2E-05 32.7 9.2 87 119-218 14-101 (136)
100 3urz_A Uncharacterized protein 89.0 1.1 3.9E-05 39.5 8.0 67 144-219 54-121 (208)
101 2y4t_A DNAJ homolog subfamily 88.9 1.4 4.7E-05 43.0 9.2 96 114-219 265-362 (450)
102 1hh8_A P67PHOX, NCF-2, neutrop 88.9 4.8 0.00017 34.6 11.9 98 117-219 48-154 (213)
103 4i17_A Hypothetical protein; T 88.8 3.1 0.0001 36.6 10.7 95 116-219 86-213 (228)
104 1xnf_A Lipoprotein NLPI; TPR, 88.6 0.85 2.9E-05 41.0 6.9 97 110-219 47-144 (275)
105 2q7f_A YRRB protein; TPR, prot 88.4 1.3 4.6E-05 38.8 8.0 87 119-218 104-191 (243)
106 1pc2_A Mitochondria fission pr 88.4 2.1 7E-05 37.2 8.8 54 159-219 50-104 (152)
107 3ffl_A Anaphase-promoting comp 88.4 1.5 5.1E-05 38.7 7.9 69 147-215 23-91 (167)
108 2hr2_A Hypothetical protein; a 88.3 3.1 0.00011 36.3 10.0 110 119-231 24-147 (159)
109 1qgp_A Protein (double strande 88.1 1.5 5.3E-05 33.3 7.0 49 310-359 17-68 (77)
110 2yhc_A BAMD, UPF0169 lipoprote 88.0 2.8 9.5E-05 37.3 9.9 94 119-219 17-129 (225)
111 1qqe_A Vesicular transport pro 88.0 5.3 0.00018 37.1 12.3 112 119-233 50-165 (292)
112 2if4_A ATFKBP42; FKBP-like, al 87.8 1.2 4.1E-05 43.0 7.8 92 118-219 191-297 (338)
113 1wao_1 Serine/threonine protei 87.7 2.9 9.9E-05 42.6 11.0 88 120-220 20-108 (477)
114 3u4t_A TPR repeat-containing p 87.7 2 6.7E-05 38.6 8.8 92 118-219 15-107 (272)
115 2vyi_A SGTA protein; chaperone 87.6 1.5 5.2E-05 33.9 7.0 66 145-219 13-79 (131)
116 2c2l_A CHIP, carboxy terminus 87.6 1.7 5.9E-05 40.5 8.6 89 118-219 16-105 (281)
117 1fch_A Peroxisomal targeting s 87.4 5.2 0.00018 37.5 11.9 84 124-218 199-283 (368)
118 2kck_A TPR repeat; tetratricop 87.0 0.67 2.3E-05 35.1 4.4 64 146-218 8-72 (112)
119 1xnf_A Lipoprotein NLPI; TPR, 87.0 3 0.0001 37.3 9.5 87 118-218 89-176 (275)
120 1wi9_A Protein C20ORF116 homol 86.8 1.9 6.6E-05 32.5 6.5 46 320-366 20-65 (72)
121 2q7f_A YRRB protein; TPR, prot 86.8 3.1 0.00011 36.3 9.4 90 117-219 68-158 (243)
122 2pl2_A Hypothetical conserved 86.7 2.6 9E-05 37.4 8.9 90 117-219 16-117 (217)
123 3cv0_A Peroxisome targeting si 86.7 7.4 0.00025 35.4 12.4 61 146-215 174-234 (327)
124 3vtx_A MAMA; tetratricopeptide 86.4 1.7 5.9E-05 36.8 7.2 67 144-219 5-72 (184)
125 2pl2_A Hypothetical conserved 86.3 1.7 5.8E-05 38.6 7.4 88 117-217 50-148 (217)
126 2dba_A Smooth muscle cell asso 86.1 3 0.0001 33.3 8.3 70 144-219 28-98 (148)
127 2vq2_A PILW, putative fimbrial 86.1 3.6 0.00012 35.2 9.3 86 119-217 21-107 (225)
128 4abn_A Tetratricopeptide repea 85.6 13 0.00043 37.5 14.4 91 115-219 111-212 (474)
129 1a17_A Serine/threonine protei 85.6 2 6.9E-05 35.1 7.1 65 146-219 15-80 (166)
130 4eqf_A PEX5-related protein; a 85.5 2.4 8.4E-05 40.1 8.5 90 119-219 190-280 (365)
131 1na0_A Designed protein CTPR3; 85.4 2.7 9.1E-05 32.1 7.3 65 145-218 10-75 (125)
132 2xpi_A Anaphase-promoting comp 85.2 2.9 9.9E-05 42.5 9.4 29 187-215 516-544 (597)
133 2ond_A Cleavage stimulation fa 85.1 19 0.00065 33.4 14.6 85 123-218 81-166 (308)
134 1qbj_A Protein (double-strande 85.1 2.1 7.2E-05 33.0 6.3 46 309-355 12-60 (81)
135 3ieg_A DNAJ homolog subfamily 84.8 4.3 0.00015 37.5 9.7 48 119-170 167-214 (359)
136 2h6f_A Protein farnesyltransfe 84.7 3.5 0.00012 40.8 9.5 93 114-219 105-199 (382)
137 2v5f_A Prolyl 4-hydroxylase su 83.9 6.1 0.00021 30.9 8.9 70 147-219 8-79 (104)
138 3mkr_A Coatomer subunit epsilo 83.7 2.8 9.7E-05 39.4 8.0 93 116-219 140-233 (291)
139 2h6f_A Protein farnesyltransfe 83.6 15 0.0005 36.2 13.5 88 119-219 144-233 (382)
140 1fch_A Peroxisomal targeting s 82.3 1.1 3.9E-05 42.2 4.6 64 146-218 66-130 (368)
141 3rkv_A Putative peptidylprolyl 81.7 3.9 0.00013 34.0 7.3 74 146-219 13-96 (162)
142 4eqf_A PEX5-related protein; a 81.4 4.8 0.00016 38.0 8.7 87 119-218 78-165 (365)
143 2e2e_A Formate-dependent nitri 81.3 4.6 0.00016 33.9 7.7 88 119-219 23-114 (177)
144 2y4t_A DNAJ homolog subfamily 81.1 7.7 0.00026 37.5 10.3 88 119-219 39-127 (450)
145 4ga2_A E3 SUMO-protein ligase 81.1 7.2 0.00025 32.3 8.8 89 118-219 43-133 (150)
146 2heo_A Z-DNA binding protein 1 80.9 4.9 0.00017 29.4 6.7 34 320-354 24-57 (67)
147 3sf4_A G-protein-signaling mod 80.4 38 0.0013 31.6 25.1 133 78-219 65-220 (406)
148 4gyw_A UDP-N-acetylglucosamine 80.2 4.9 0.00017 43.5 9.1 86 120-218 23-109 (723)
149 2c2l_A CHIP, carboxy terminus 79.8 3.4 0.00012 38.5 6.9 65 146-219 6-71 (281)
150 2pjp_A Selenocysteine-specific 79.8 12 0.0004 30.6 9.5 87 313-412 10-100 (121)
151 3n71_A Histone lysine methyltr 79.6 12 0.00039 38.6 11.4 97 119-217 322-423 (490)
152 2yhc_A BAMD, UPF0169 lipoprote 79.5 4.2 0.00014 36.1 7.2 67 147-219 7-74 (225)
153 1zu2_A Mitochondrial import re 79.4 5.4 0.00018 34.7 7.5 52 160-220 62-125 (158)
154 3bee_A Putative YFRE protein; 79.4 10 0.00036 29.3 8.6 67 147-223 9-79 (93)
155 3fp2_A TPR repeat-containing p 78.8 21 0.00072 35.2 12.9 112 90-219 13-125 (537)
156 3k9i_A BH0479 protein; putativ 78.4 2.3 7.8E-05 33.5 4.5 57 157-219 3-60 (117)
157 1w3b_A UDP-N-acetylglucosamine 78.3 8.7 0.0003 36.5 9.5 91 116-219 111-202 (388)
158 1sfx_A Conserved hypothetical 78.1 18 0.00062 27.7 9.8 39 319-358 32-70 (109)
159 2fbn_A 70 kDa peptidylprolyl i 78.0 5.1 0.00017 34.5 7.1 74 146-219 40-121 (198)
160 2gw1_A Mitochondrial precursor 77.8 6.9 0.00024 38.4 8.8 87 117-217 17-104 (514)
161 2vsy_A XCC0866; transferase, g 77.6 7.3 0.00025 39.9 9.2 61 146-215 93-156 (568)
162 3cv0_A Peroxisome targeting si 77.4 9.1 0.00031 34.8 9.0 87 120-219 35-122 (327)
163 4gyw_A UDP-N-acetylglucosamine 77.4 6.7 0.00023 42.4 9.1 92 115-219 52-144 (723)
164 3mkr_A Coatomer subunit epsilo 76.9 36 0.0012 31.5 13.2 87 120-219 180-268 (291)
165 1xn7_A Hypothetical protein YH 75.5 5.6 0.00019 30.3 5.7 43 311-354 6-48 (78)
166 1w3b_A UDP-N-acetylglucosamine 75.5 7.8 0.00027 36.9 8.3 60 147-215 36-95 (388)
167 3fp2_A TPR repeat-containing p 75.4 8.2 0.00028 38.3 8.6 92 114-218 284-376 (537)
168 2xpi_A Anaphase-promoting comp 75.3 11 0.00039 38.0 9.8 88 117-210 418-505 (597)
169 2jt1_A PEFI protein; solution 75.3 6.8 0.00023 29.8 6.1 36 320-356 23-58 (77)
170 2hr2_A Hypothetical protein; a 75.2 11 0.00038 32.7 8.3 70 146-216 13-86 (159)
171 2gw1_A Mitochondrial precursor 74.8 6.7 0.00023 38.5 7.8 98 114-218 346-447 (514)
172 1hz4_A MALT regulatory protein 74.7 43 0.0015 31.4 13.3 100 119-219 66-168 (373)
173 2ifu_A Gamma-SNAP; membrane fu 74.6 53 0.0018 30.3 21.2 136 77-222 93-230 (307)
174 1ub9_A Hypothetical protein PH 74.4 21 0.00072 27.1 9.2 49 309-358 18-66 (100)
175 2htj_A P fimbrial regulatory p 74.4 6.2 0.00021 29.7 5.7 36 319-355 12-47 (81)
176 4g1t_A Interferon-induced prot 73.6 11 0.00037 36.9 8.9 94 117-220 186-281 (472)
177 3t5v_A Nuclear mRNA export pro 73.4 6.4 0.00022 38.2 6.9 46 299-344 198-247 (316)
178 4abn_A Tetratricopeptide repea 73.2 8.3 0.00028 38.8 8.1 67 143-218 101-169 (474)
179 4a1s_A PINS, partner of inscut 73.0 63 0.0022 30.4 23.7 133 78-219 104-256 (411)
180 1nzn_A CGI-135 protein, fissio 72.9 6.6 0.00023 32.9 6.0 37 183-219 70-107 (126)
181 1p5q_A FKBP52, FK506-binding p 72.4 7.1 0.00024 37.4 7.1 74 145-219 148-229 (336)
182 4g1t_A Interferon-induced prot 72.2 17 0.00058 35.4 10.0 80 146-231 336-417 (472)
183 2k02_A Ferrous iron transport 72.2 9 0.00031 29.9 6.2 45 311-356 6-50 (87)
184 4f3v_A ESX-1 secretion system 72.0 10 0.00035 36.1 7.9 65 146-217 137-201 (282)
185 2r5s_A Uncharacterized protein 71.8 4 0.00014 34.6 4.6 62 147-217 9-71 (176)
186 1hz4_A MALT regulatory protein 71.6 66 0.0023 30.0 17.7 95 118-216 105-203 (373)
187 3qww_A SET and MYND domain-con 71.4 9.3 0.00032 38.6 7.9 92 124-217 316-412 (433)
188 2cfx_A HTH-type transcriptiona 71.0 9.2 0.00031 32.0 6.7 48 311-359 9-59 (144)
189 3ro2_A PINS homolog, G-protein 69.9 60 0.0021 28.9 24.3 133 78-219 61-216 (338)
190 1na3_A Designed protein CTPR2; 69.1 4.9 0.00017 29.1 4.0 37 183-219 5-42 (91)
191 2p5v_A Transcriptional regulat 68.8 10 0.00035 32.4 6.6 47 312-359 15-64 (162)
192 2cg4_A Regulatory protein ASNC 68.7 9.9 0.00034 32.1 6.4 47 312-359 13-62 (152)
193 3i4p_A Transcriptional regulat 68.2 12 0.00042 32.1 6.9 48 311-359 7-57 (162)
194 2dbb_A Putative HTH-type trans 67.8 11 0.00036 31.8 6.4 47 312-359 14-63 (151)
195 2vsy_A XCC0866; transferase, g 67.1 25 0.00084 35.8 10.2 88 119-219 36-124 (568)
196 1oyi_A Double-stranded RNA-bin 67.0 7.5 0.00026 30.0 4.7 33 322-355 31-63 (82)
197 3qwp_A SET and MYND domain-con 66.8 13 0.00046 37.3 7.9 71 146-217 331-401 (429)
198 2oqg_A Possible transcriptiona 66.8 44 0.0015 26.1 11.0 38 319-357 32-69 (114)
199 2ia0_A Putative HTH-type trans 66.2 12 0.00042 32.5 6.6 42 317-359 27-71 (171)
200 1jgs_A Multiple antibiotic res 66.0 49 0.0017 26.5 10.1 42 319-361 46-87 (138)
201 1ihg_A Cyclophilin 40; ppiase 65.5 15 0.0005 35.9 7.8 74 146-219 225-306 (370)
202 4f3v_A ESX-1 secretion system 65.4 7.2 0.00025 37.2 5.3 64 144-217 102-165 (282)
203 3txn_A 26S proteasome regulato 65.3 1E+02 0.0036 30.5 14.0 72 144-218 99-170 (394)
204 3o48_A Mitochondria fission 1 64.2 16 0.00054 30.9 6.5 37 183-219 74-111 (134)
205 2y75_A HTH-type transcriptiona 64.1 20 0.00068 29.2 7.2 62 320-383 25-86 (129)
206 3ma5_A Tetratricopeptide repea 63.4 5.8 0.0002 30.4 3.5 34 186-219 6-40 (100)
207 2w25_A Probable transcriptiona 63.0 16 0.00055 30.6 6.6 42 317-359 17-61 (150)
208 3ly7_A Transcriptional activat 62.5 1.2E+02 0.0041 29.9 13.6 66 144-219 277-343 (372)
209 3lwf_A LIN1550 protein, putati 62.3 21 0.00073 30.8 7.3 61 321-383 44-104 (159)
210 3cuo_A Uncharacterized HTH-typ 61.6 29 0.001 26.2 7.5 38 319-357 36-73 (99)
211 1kt0_A FKBP51, 51 kDa FK506-bi 61.5 13 0.00045 37.3 6.7 74 145-219 269-350 (457)
212 2nnn_A Probable transcriptiona 61.3 40 0.0014 27.0 8.7 42 320-362 51-92 (140)
213 3t8r_A Staphylococcus aureus C 60.7 25 0.00086 29.5 7.4 63 321-385 28-90 (143)
214 2fbi_A Probable transcriptiona 60.7 39 0.0013 27.1 8.5 44 319-363 48-91 (142)
215 1ouv_A Conserved hypothetical 60.6 25 0.00087 31.4 8.0 80 120-216 20-107 (273)
216 1ouv_A Conserved hypothetical 60.0 30 0.001 30.9 8.4 81 119-216 55-143 (273)
217 2x4h_A Hypothetical protein SS 59.8 22 0.00076 29.0 6.8 39 315-354 25-63 (139)
218 3hsr_A HTH-type transcriptiona 59.4 27 0.00093 28.4 7.3 42 319-361 48-89 (140)
219 2cyy_A Putative HTH-type trans 59.1 14 0.00047 31.2 5.4 46 312-358 12-60 (151)
220 2e1c_A Putative HTH-type trans 58.6 15 0.0005 32.0 5.6 46 312-358 32-80 (171)
221 3qou_A Protein YBBN; thioredox 58.6 12 0.0004 34.7 5.4 80 126-217 102-182 (287)
222 2a61_A Transcriptional regulat 58.6 63 0.0021 26.0 9.5 43 319-362 45-87 (145)
223 1ylf_A RRF2 family protein; st 58.4 12 0.00042 31.7 5.0 60 321-383 30-89 (149)
224 1y8m_A FIS1; mitochondria, unk 58.4 13 0.00044 31.9 5.0 35 185-219 75-110 (144)
225 2d1h_A ST1889, 109AA long hypo 58.1 59 0.002 24.7 9.8 45 313-358 28-72 (109)
226 2bv6_A MGRA, HTH-type transcri 57.9 52 0.0018 26.5 8.8 41 319-360 49-89 (142)
227 2fbh_A Transcriptional regulat 56.8 44 0.0015 26.9 8.2 42 318-360 49-90 (146)
228 1xd7_A YWNA; structural genomi 56.8 11 0.00036 31.9 4.3 68 313-384 16-83 (145)
229 3bdd_A Regulatory protein MARR 56.7 31 0.0011 27.7 7.2 41 319-360 43-83 (142)
230 1xmk_A Double-stranded RNA-spe 55.4 22 0.00077 27.1 5.5 45 309-354 13-58 (79)
231 2pn6_A ST1022, 150AA long hypo 55.1 16 0.00056 30.5 5.3 48 311-359 7-57 (150)
232 3qou_A Protein YBBN; thioredox 55.1 27 0.00092 32.2 7.3 115 84-219 103-218 (287)
233 3eco_A MEPR; mutlidrug efflux 54.8 46 0.0016 26.7 7.9 40 321-361 47-86 (139)
234 2kat_A Uncharacterized protein 54.4 12 0.0004 28.8 4.0 34 186-219 18-52 (115)
235 3bpv_A Transcriptional regulat 54.3 42 0.0014 26.9 7.6 45 319-364 41-85 (138)
236 3k0l_A Repressor protein; heli 53.6 95 0.0032 25.7 11.0 42 319-361 58-99 (162)
237 2pzi_A Probable serine/threoni 53.5 20 0.00069 37.9 6.8 51 118-172 445-495 (681)
238 2r5s_A Uncharacterized protein 52.8 34 0.0012 28.5 7.0 80 125-215 93-172 (176)
239 2rdp_A Putative transcriptiona 52.2 59 0.002 26.4 8.3 42 319-361 54-95 (150)
240 1lj9_A Transcriptional regulat 52.2 52 0.0018 26.5 7.9 40 320-360 42-81 (144)
241 3oop_A LIN2960 protein; protei 52.1 29 0.001 28.2 6.3 40 320-360 50-89 (143)
242 2l6j_A TPR repeat-containing p 51.8 23 0.00078 26.3 5.2 88 117-211 15-102 (111)
243 2ooe_A Cleavage stimulation fa 51.7 88 0.003 31.2 11.1 84 124-218 304-387 (530)
244 2gxg_A 146AA long hypothetical 51.7 38 0.0013 27.4 6.9 41 319-360 48-88 (146)
245 2pi2_A Replication protein A 3 51.4 3.1 0.00011 39.4 0.0 38 320-358 223-261 (270)
246 1ku9_A Hypothetical protein MJ 50.9 94 0.0032 24.9 9.8 41 320-361 40-80 (152)
247 2eth_A Transcriptional regulat 50.8 62 0.0021 26.6 8.3 40 320-360 57-96 (154)
248 1i1g_A Transcriptional regulat 50.6 23 0.00079 29.1 5.4 36 318-354 15-50 (141)
249 3bro_A Transcriptional regulat 50.6 46 0.0016 26.7 7.3 40 321-361 50-89 (141)
250 2nyx_A Probable transcriptiona 50.6 39 0.0013 28.5 7.0 42 319-361 57-98 (168)
251 3s2w_A Transcriptional regulat 50.5 44 0.0015 27.8 7.3 42 319-361 62-103 (159)
252 1on2_A Transcriptional regulat 50.4 1E+02 0.0034 25.0 10.2 45 318-366 19-63 (142)
253 3k69_A Putative transcription 50.1 19 0.00065 31.1 4.9 61 320-382 27-87 (162)
254 3bja_A Transcriptional regulat 50.0 42 0.0015 26.8 6.9 41 319-360 45-85 (139)
255 3tgn_A ADC operon repressor AD 49.7 23 0.00077 28.9 5.2 44 317-362 48-91 (146)
256 2kko_A Possible transcriptiona 49.6 53 0.0018 25.8 7.2 37 320-357 37-73 (108)
257 3bj6_A Transcriptional regulat 49.4 36 0.0012 27.8 6.5 41 319-360 52-92 (152)
258 3eqx_A FIC domain containing t 49.3 1.7E+02 0.0058 28.6 12.3 140 204-353 187-342 (373)
259 1lva_A Selenocysteine-specific 49.2 79 0.0027 29.2 9.4 83 317-413 153-237 (258)
260 1s3j_A YUSO protein; structura 49.2 47 0.0016 27.2 7.2 41 319-360 49-89 (155)
261 4gns_B Protein CSD3, chitin bi 49.1 52 0.0018 35.7 9.1 60 145-213 338-397 (754)
262 4b4t_R RPN7, 26S proteasome re 48.9 59 0.002 32.4 9.1 92 126-223 110-204 (429)
263 3g3z_A NMB1585, transcriptiona 48.0 35 0.0012 27.8 6.1 41 319-360 43-83 (145)
264 1z7u_A Hypothetical protein EF 47.8 1E+02 0.0034 24.3 9.2 41 320-361 34-75 (112)
265 2hr3_A Probable transcriptiona 47.7 48 0.0016 26.9 7.0 40 319-359 48-87 (147)
266 1tbx_A ORF F-93, hypothetical 47.2 73 0.0025 24.2 7.6 46 319-365 20-69 (99)
267 2v79_A DNA replication protein 47.1 23 0.0008 29.7 4.9 39 320-359 50-90 (135)
268 2ond_A Cleavage stimulation fa 46.8 43 0.0015 30.9 7.3 87 119-219 112-202 (308)
269 2if4_A ATFKBP42; FKBP-like, al 46.7 19 0.00065 34.4 4.8 74 146-219 181-263 (338)
270 3ech_A MEXR, multidrug resista 46.3 25 0.00087 28.6 5.0 42 319-361 49-90 (142)
271 1z05_A Transcriptional regulat 46.2 42 0.0014 33.3 7.5 46 308-354 40-85 (429)
272 1z6r_A MLC protein; transcript 46.2 30 0.001 34.0 6.4 46 308-354 17-62 (406)
273 2qww_A Transcriptional regulat 46.2 39 0.0013 27.7 6.2 41 319-360 53-95 (154)
274 3nqo_A MARR-family transcripti 45.9 79 0.0027 27.3 8.5 42 319-361 55-96 (189)
275 3cjn_A Transcriptional regulat 45.6 48 0.0016 27.5 6.8 41 319-360 64-104 (162)
276 2frh_A SARA, staphylococcal ac 45.5 36 0.0012 27.5 5.7 40 320-360 52-91 (127)
277 3nrv_A Putative transcriptiona 45.4 35 0.0012 27.8 5.7 41 319-360 52-92 (148)
278 2lnb_A Z-DNA-binding protein 1 45.2 70 0.0024 24.4 6.6 44 309-353 22-65 (80)
279 1wao_1 Serine/threonine protei 45.0 16 0.00054 37.0 4.1 58 153-219 15-73 (477)
280 2pex_A Transcriptional regulat 44.9 41 0.0014 27.6 6.2 41 319-360 59-99 (153)
281 4hbl_A Transcriptional regulat 44.8 31 0.001 28.5 5.3 42 319-361 53-94 (149)
282 3by6_A Predicted transcription 44.0 46 0.0016 27.2 6.2 67 297-366 10-77 (126)
283 1y0u_A Arsenical resistance op 43.6 57 0.0019 24.8 6.4 44 320-368 42-85 (96)
284 3e6m_A MARR family transcripti 43.4 38 0.0013 28.2 5.8 41 319-360 65-105 (161)
285 1u2w_A CADC repressor, cadmium 43.1 93 0.0032 24.9 7.9 37 319-356 54-90 (122)
286 3deu_A Transcriptional regulat 42.9 63 0.0022 27.2 7.2 41 319-360 66-106 (166)
287 2ooe_A Cleavage stimulation fa 42.9 48 0.0017 33.2 7.4 90 119-219 334-424 (530)
288 1xi4_A Clathrin heavy chain; a 42.8 4.8E+02 0.016 30.8 20.0 28 6-33 1135-1162(1630)
289 2hzt_A Putative HTH-type trans 42.4 75 0.0026 24.8 7.1 42 319-361 25-67 (107)
290 3jth_A Transcription activator 42.2 64 0.0022 24.5 6.5 37 320-357 35-71 (98)
291 1uly_A Hypothetical protein PH 42.1 49 0.0017 29.3 6.5 43 311-355 24-66 (192)
292 3f3x_A Transcriptional regulat 42.0 1.1E+02 0.0037 24.6 8.3 39 323-362 52-90 (144)
293 1r1u_A CZRA, repressor protein 41.3 1.1E+02 0.0036 23.7 7.8 44 320-366 38-81 (106)
294 2fa5_A Transcriptional regulat 41.1 42 0.0015 27.8 5.7 41 319-360 61-101 (162)
295 3qww_A SET and MYND domain-con 40.9 79 0.0027 31.6 8.5 59 157-216 311-369 (433)
296 2qvo_A Uncharacterized protein 40.7 80 0.0027 23.9 6.8 30 322-352 31-60 (95)
297 3cdh_A Transcriptional regulat 39.9 37 0.0013 28.0 5.1 40 319-359 55-94 (155)
298 3f6o_A Probable transcriptiona 39.6 90 0.0031 24.8 7.2 37 320-357 30-66 (118)
299 4b4t_P 26S proteasome regulato 39.2 2.3E+02 0.0079 28.2 11.8 67 146-215 139-205 (445)
300 1ucr_A Protein DSVD; dissimila 38.8 33 0.0011 26.1 3.9 36 317-353 17-53 (78)
301 3ffl_A Anaphase-promoting comp 38.6 91 0.0031 27.2 7.4 73 147-222 66-154 (167)
302 2k9l_A RNA polymerase sigma fa 38.6 27 0.00091 26.2 3.5 25 319-344 46-70 (76)
303 1tty_A Sigma-A, RNA polymerase 37.2 49 0.0017 24.9 5.0 49 299-348 11-64 (87)
304 2kc7_A BFR218_protein; tetratr 37.0 31 0.001 25.3 3.7 29 191-219 4-33 (99)
305 3tqn_A Transcriptional regulat 36.9 61 0.0021 25.8 5.7 65 298-365 9-74 (113)
306 4aik_A Transcriptional regulat 36.5 1.5E+02 0.0052 24.4 8.5 41 320-361 45-85 (151)
307 3r0a_A Putative transcriptiona 36.5 1.6E+02 0.0056 23.5 11.5 36 322-358 43-78 (123)
308 2vn2_A DNAD, chromosome replic 36.5 34 0.0012 28.1 4.2 36 322-358 52-87 (128)
309 1x3u_A Transcriptional regulat 36.2 89 0.0031 22.4 6.2 49 299-348 9-57 (79)
310 2pg4_A Uncharacterized protein 36.2 1.2E+02 0.0042 22.8 7.2 32 321-353 30-62 (95)
311 4b8x_A SCO5413, possible MARR- 35.9 89 0.0031 25.7 6.9 41 320-361 50-90 (147)
312 1xi4_A Clathrin heavy chain; a 34.4 6.4E+02 0.022 29.7 15.5 58 144-215 1105-1162(1630)
313 2qlz_A Transcription factor PF 34.3 1.1E+02 0.0037 28.0 7.6 47 317-367 174-220 (232)
314 4ham_A LMO2241 protein; struct 34.2 1.9E+02 0.0064 23.5 12.0 69 296-367 12-81 (134)
315 2xvc_A ESCRT-III, SSO0910; cel 34.2 55 0.0019 23.4 4.2 32 321-353 25-56 (59)
316 2v5f_A Prolyl 4-hydroxylase su 34.1 71 0.0024 24.4 5.6 61 112-172 11-74 (104)
317 3n71_A Histone lysine methyltr 34.0 1.5E+02 0.0052 30.0 9.5 62 154-216 319-380 (490)
318 1z91_A Organic hydroperoxide r 33.9 50 0.0017 26.7 4.9 38 320-358 53-90 (147)
319 2fxa_A Protease production reg 33.8 65 0.0022 28.5 5.9 41 320-361 61-101 (207)
320 3kp7_A Transcriptional regulat 33.6 53 0.0018 26.9 5.0 36 318-354 48-83 (151)
321 3b73_A PHIH1 repressor-like pr 33.6 71 0.0024 25.7 5.6 51 311-365 17-69 (111)
322 3neu_A LIN1836 protein; struct 32.8 71 0.0024 25.9 5.6 68 296-366 11-79 (125)
323 2fu4_A Ferric uptake regulatio 32.8 1.3E+02 0.0046 21.9 6.8 44 320-365 32-80 (83)
324 3iuo_A ATP-dependent DNA helic 32.0 39 0.0013 27.7 3.8 31 320-351 31-61 (122)
325 3pqk_A Biofilm growth-associat 31.7 1.7E+02 0.0058 22.2 8.8 38 320-358 35-72 (102)
326 3hug_A RNA polymerase sigma fa 31.7 71 0.0024 24.1 5.1 47 300-347 31-78 (92)
327 3jw4_A Transcriptional regulat 31.0 46 0.0016 27.2 4.2 41 320-361 56-96 (148)
328 3df8_A Possible HXLR family tr 29.7 1.4E+02 0.0049 23.4 6.8 35 322-357 43-78 (111)
329 3dra_A Protein farnesyltransfe 29.5 3.2E+02 0.011 25.6 10.5 121 97-236 25-156 (306)
330 3fm5_A Transcriptional regulat 29.3 60 0.002 26.5 4.6 41 320-361 53-93 (150)
331 3boq_A Transcriptional regulat 29.2 47 0.0016 27.4 4.0 43 317-360 58-100 (160)
332 3mv2_B Coatomer subunit epsilo 28.8 2.8E+02 0.0094 26.4 9.8 93 119-217 113-208 (310)
333 2wte_A CSA3; antiviral protein 28.7 1.7E+02 0.0057 26.9 7.9 46 318-366 163-208 (244)
334 3t72_q RNA polymerase sigma fa 28.2 98 0.0034 24.3 5.4 48 299-347 12-64 (99)
335 2hoe_A N-acetylglucosamine kin 28.2 60 0.002 31.6 5.1 41 312-354 25-65 (380)
336 3dra_A Protein farnesyltransfe 28.0 2.1E+02 0.0071 27.0 8.8 76 151-239 39-118 (306)
337 2ek5_A Predicted transcription 27.7 1.1E+02 0.0038 25.0 6.0 45 318-365 24-69 (129)
338 1sfu_A 34L protein; protein/Z- 27.6 95 0.0032 23.4 4.9 37 322-359 30-66 (75)
339 3qwp_A SET and MYND domain-con 27.5 1.5E+02 0.0051 29.4 8.0 61 154-215 297-357 (429)
340 3dv8_A Transcriptional regulat 27.4 1.1E+02 0.0037 26.3 6.3 43 320-367 168-210 (220)
341 2fsw_A PG_0823 protein; alpha- 27.0 1.8E+02 0.0062 22.4 6.9 41 319-360 36-77 (107)
342 3u2r_A Regulatory protein MARR 26.9 2.7E+02 0.0091 22.9 10.6 43 320-363 61-103 (168)
343 1klx_A Cysteine rich protein B 26.8 1.2E+02 0.0041 24.3 6.0 59 147-216 60-126 (138)
344 3dkw_A DNR protein; CRP-FNR, H 26.8 82 0.0028 27.3 5.3 44 320-368 177-220 (227)
345 2lkp_A Transcriptional regulat 26.6 1.1E+02 0.0039 23.9 5.7 45 320-367 44-88 (119)
346 3u64_A Protein TP_0956; tetrat 26.3 1.3E+02 0.0044 28.8 6.7 77 134-219 190-272 (301)
347 2f2e_A PA1607; transcription f 26.2 1.8E+02 0.0061 24.1 7.1 42 319-361 35-76 (146)
348 2xm6_A Protein corresponding t 25.4 1.9E+02 0.0065 28.3 8.4 26 190-215 150-179 (490)
349 1r7j_A Conserved hypothetical 25.2 2.3E+02 0.0079 21.7 10.8 64 322-395 21-84 (95)
350 2oz6_A Virulence factor regula 24.9 65 0.0022 27.5 4.2 43 320-367 163-205 (207)
351 3mzy_A RNA polymerase sigma-H 24.4 1.2E+02 0.0042 24.5 5.8 47 300-347 102-149 (164)
352 2jsc_A Transcriptional regulat 24.1 1.8E+02 0.006 23.0 6.5 37 320-357 33-69 (118)
353 3k2z_A LEXA repressor; winged 23.8 1.7E+02 0.0058 25.4 6.8 34 321-355 24-57 (196)
354 4ev0_A Transcription regulator 23.7 70 0.0024 27.5 4.2 43 320-367 162-204 (216)
355 1j5y_A Transcriptional regulat 23.7 1.4E+02 0.0049 25.8 6.3 44 310-354 24-69 (187)
356 2kfs_A Conserved hypothetical 23.3 45 0.0016 28.6 2.7 40 320-366 30-69 (148)
357 4fx0_A Probable transcriptiona 22.9 1.8E+02 0.0062 23.8 6.5 41 320-362 51-91 (148)
358 3ryp_A Catabolite gene activat 22.9 76 0.0026 27.1 4.3 32 321-353 167-198 (210)
359 2p7v_B Sigma-70, RNA polymeras 22.8 1.3E+02 0.0044 21.1 4.8 28 320-348 24-51 (68)
360 3rjv_A Putative SEL1 repeat pr 22.7 1.1E+02 0.0038 26.3 5.4 58 146-215 20-81 (212)
361 2qc0_A Uncharacterized protein 22.7 5.2E+02 0.018 24.9 12.8 33 321-354 311-343 (373)
362 1q1h_A TFE, transcription fact 22.6 1.3E+02 0.0044 23.3 5.3 35 320-355 32-66 (110)
363 3c57_A Two component transcrip 22.6 74 0.0025 24.4 3.6 49 300-349 21-69 (95)
364 3e97_A Transcriptional regulat 22.5 80 0.0027 27.6 4.4 44 319-367 173-216 (231)
365 2gau_A Transcriptional regulat 22.5 79 0.0027 27.6 4.4 43 320-367 179-221 (232)
366 3d0s_A Transcriptional regulat 22.4 79 0.0027 27.5 4.3 42 321-367 177-218 (227)
367 2jpc_A SSRB; DNA binding prote 22.3 1.4E+02 0.0048 20.1 4.8 30 318-348 10-39 (61)
368 3la7_A Global nitrogen regulat 22.0 81 0.0028 28.0 4.4 44 320-368 192-235 (243)
369 2zcw_A TTHA1359, transcription 22.0 82 0.0028 26.9 4.3 43 320-367 145-187 (202)
370 3iwz_A CAP-like, catabolite ac 21.8 81 0.0028 27.4 4.3 43 320-367 186-228 (230)
371 3cuq_B Vacuolar protein-sortin 21.8 2.9E+02 0.01 24.8 8.1 44 320-366 167-210 (218)
372 2fmy_A COOA, carbon monoxide o 21.6 84 0.0029 27.2 4.3 43 320-367 166-209 (220)
373 3lmm_A Uncharacterized protein 21.5 20 0.00067 37.8 0.0 45 309-354 518-562 (583)
374 4fhn_B Nucleoporin NUP120; pro 21.3 1E+02 0.0034 34.9 5.8 59 144-215 812-870 (1139)
375 3e6c_C CPRK, cyclic nucleotide 21.2 1.6E+02 0.0055 26.0 6.3 42 320-366 176-217 (250)
376 3b02_A Transcriptional regulat 21.2 71 0.0024 27.2 3.7 43 320-367 138-180 (195)
377 1r1t_A Transcriptional repress 21.2 2.7E+02 0.0092 22.2 7.1 37 320-357 58-94 (122)
378 2k9m_A RNA polymerase sigma fa 21.0 75 0.0026 26.4 3.6 25 319-344 37-61 (130)
379 1ft9_A Carbon monoxide oxidati 20.7 83 0.0028 27.4 4.1 33 320-353 162-194 (222)
380 1p6r_A Penicillinase repressor 20.3 2.5E+02 0.0085 20.3 7.3 38 319-357 21-62 (82)
381 2b0l_A GTP-sensing transcripti 20.3 83 0.0028 24.7 3.5 47 319-366 40-87 (102)
382 3bqo_A Telomeric repeat-bindin 20.2 96 0.0033 28.0 4.2 49 124-172 89-145 (211)
383 2dk5_A DNA-directed RNA polyme 20.0 1.4E+02 0.0046 23.1 4.7 37 321-358 36-72 (91)
No 1
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-49 Score=410.60 Aligned_cols=350 Identities=16% Similarity=0.176 Sum_probs=212.8
Q ss_pred cchhhHHHHHHHHHHhccccCCCCCCccHHHHHHHHH--HHHHhcChhhhhhhH---HHHHHHHHHHHHHHhhh-CC---
Q psy9642 51 TFQHSLGILAILSAKLTLLSSSNTGSEYQEELFSQIQ--EFLNMCNPDQIRHAG---DLYAELSHQYTKTVMDL-KT--- 121 (437)
Q Consensus 51 p~~hsl~~L~vL~~~~~~~~~~~~~~~~~~~~~~~~~--~fl~~fd~~Qir~a~---~~~~~l~~~~~~~~~~~-~~--- 121 (437)
|+...+.+|.++..+++... ..+...+...++ +.+..+|++.+.... .+|++++++....+... +.
T Consensus 132 pE~~~y~~lL~~i~L~d~k~-----~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~ 206 (523)
T 4b4t_S 132 AEINCFMHLLVQLFLWDSKE-----LEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQ 206 (523)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred hHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 55666666666666665443 445566777666 678889999887555 34555666543322210 00
Q ss_pred --CCcc--hHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHH
Q psy9642 122 --PQRG--IPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIY 197 (437)
Q Consensus 122 --~~~~--i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~ 197 (437)
.+|+ +..+++|++|.|+ .+-+++|..++|.+|..+.|.+|..++++..+. ....+.++.++|+||.|+|+
T Consensus 207 ~~~ir~~Ll~~~rta~lr~D~--~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP----~~~~sn~q~~rY~YY~GRI~ 280 (523)
T 4b4t_S 207 NIILRSTMMKFLKIASLKHDN--ETKAMLINLILRDFLNNGEVDSASDFISKLEYP----HTDVSSSLEARYFFYLSKIN 280 (523)
T ss_dssp HHHHHTHHHHHHHHCCSCSSS--CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC----TTTSCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcccCc--chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC----cccCCHHHHHHHHHHHHHHH
Confidence 0232 3467888878775 567889999999999999999999999998652 12357788999999999999
Q ss_pred HHHhhHHHHHHHHHHHhc-ccccc-cCHHHHHHHHHHHHHHHHHhCCCCCCCccccHHHhHhhccCCHHHHHHHHHHhcC
Q psy9642 198 LALKNYERALYFFEVIIT-TPALA-VSHIMLEGYKKYLLIYLIVYGKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNN 275 (437)
Q Consensus 198 ~~~k~y~~A~~~~~~ai~-~P~~~-~s~i~vea~Kk~iLv~Lil~G~~~~lp~~~s~~~~r~~k~~~~pY~~L~~af~~~ 275 (437)
+.+++|.+|.++|..|++ +|... ...+...++|++|+|.|+ .|++|+.+.+..+. +++.+.||.+|++||+.|
T Consensus 281 a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LL-lG~iP~r~lf~q~~----l~~~L~pY~~Lv~Avr~G 355 (523)
T 4b4t_S 281 AIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLL-MGDIPELSFFHQSN----MQKSLLPYYHLTKAVKLG 355 (523)
T ss_dssp HHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHH-HTCCCCHHHHTTTS----CHHHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhh-cCCCCChHHhhchh----HHHHHHHHHHHHHHHHcC
Confidence 999999999999999999 88765 457889999999999996 59999877664432 334578999999999999
Q ss_pred CHHHHHHHHHhccccccccchhhHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEE
Q psy9642 276 NSTELQHLLLKYADVFSRDENTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYAT 355 (437)
Q Consensus 276 d~~~~~~~~~~~~~~f~~D~n~~Lv~~l~~~v~r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~ 355 (437)
|+..|.+++++|+..|.+|||++||++|+.+++|++|++++++|++||++|||.+++++++++||++|++||.+|.|.|+
T Consensus 356 dL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~ 435 (523)
T 4b4t_S 356 DLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAK 435 (523)
T ss_dssp CHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCE
T ss_pred CHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999998788999999999999999999
Q ss_pred EecCCCEEEEccCCCCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCH-HHHHHhcCCC
Q psy9642 356 INKKDGMVVFNDNPQRFNNPLTFAQIESNIRACMHLDG-KFQAMEEEILVNP-LYVKKAASPS 416 (437)
Q Consensus 356 Id~~~g~v~F~~~~~~~~~~e~~~~l~~~i~~~~~L~~-~~~~~d~~l~~~~-~yi~k~~~~~ 416 (437)
|||++|+|+|.+.++.|++.||+..|+++|++|++|++ .+++|+..-...+ ++.++..+.+
T Consensus 436 Idh~~g~v~ske~~d~yst~ep~~af~~RI~~cl~L~ne~vkaMryp~~~~~~~~~~~~~~~~ 498 (523)
T 4b4t_S 436 INHEDGFIETTELLNIYDSEDPQQVFDERIKFANQLHDEYLVSMRYPEDKKTQQNEKSENGEN 498 (523)
T ss_dssp ECTTTCCEECCSSSCC-----------------------------------------------
T ss_pred EecCCCEEEeCccccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcccchhhHHHHHHHhh
Confidence 99999999999999999999999999999999999987 8999997655444 4444433333
No 2
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-27 Score=247.33 Aligned_cols=247 Identities=15% Similarity=0.206 Sum_probs=183.7
Q ss_pred CcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccc
Q psy9642 140 DSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPAL 219 (437)
Q Consensus 140 ~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~~P~~ 219 (437)
.....-+++.++|+|+..++|..| .++.+.+.....+ ...++.-.+.|+.|+|+++.+.++|.+|+++|..++.+|..
T Consensus 173 ~~~kve~~l~q~rl~l~~~d~~~a-~~~~~ki~~~~~~-~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 173 MSEKIQFILEQMELSILKGDYSQA-TVLSRKILKKTFK-NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhhcc-cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 456678999999999999999999 6666655432111 23356679999999999999999999999999999999998
Q ss_pred ccCHHHHHHHHHHHHHHHHHhCCCCCCCccccHHHhHhhc----cCCHHHHHHHHHHhcCCHHHHHHHHHhccccccccc
Q psy9642 220 AVSHIMLEGYKKYLLIYLIVYGKAPNLPKNVSQAICRYIK----PLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDE 295 (437)
Q Consensus 220 ~~s~i~vea~Kk~iLv~Lil~G~~~~lp~~~s~~~~r~~k----~~~~pY~~L~~af~~~d~~~~~~~~~~~~~~f~~D~ 295 (437)
..+.....+..+++++++++.+..|..... ..+.++ +.+++|..|+++|.++++..|..+.+.|...+..|.
T Consensus 251 ~~d~~~~~~~L~~~v~~~iLa~~~~~~~~l----l~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 251 KSDEAKWKPVLSHIVYFLVLSPYGNLQNDL----IHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSSCSSTTHHH----HHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCchHHHH----HHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 777766666667777788887666654333 333222 247899999999999999999999999988776655
Q ss_pred h-------hhHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEccC
Q psy9642 296 N-------TGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDN 368 (437)
Q Consensus 296 n-------~~Lv~~l~~~v~r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~ 368 (437)
. -..+..+..++++|||++++++|++|++++||+.++++ ++++|..+++||.+|.|+|+|||++|+|+|..+
T Consensus 327 ~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~ 405 (445)
T 4b4t_P 327 LAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYISDLVNQGIIYAKVNRPAKIVNFEKP 405 (445)
T ss_dssp SSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCCEEETTTTEEEC---
T ss_pred hhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCC
Confidence 3 45799999999999999999999999999999999997 899999999999999999999999999999876
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy9642 369 PQRFNNPLTFAQIESNIRACMHLDGKFQ 396 (437)
Q Consensus 369 ~~~~~~~e~~~~l~~~i~~~~~L~~~~~ 396 (437)
.+ +++.++.|..+|..++.+.+++.
T Consensus 406 ~~---~~~~l~~W~~~i~~l~~~v~k~~ 430 (445)
T 4b4t_P 406 KN---SSQLLNEWSHNVDELLEHIETIG 430 (445)
T ss_dssp ----------------------------
T ss_pred CC---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 56899999999999999887664
No 3
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.94 E-value=4.4e-27 Score=219.52 Aligned_cols=180 Identities=13% Similarity=0.143 Sum_probs=156.2
Q ss_pred CCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-ccccccCHHHHHHHHHHHHHHHHHhCCCCCCCccccHHHhHh
Q psy9642 179 PQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPALAVSHIMLEGYKKYLLIYLIVYGKAPNLPKNVSQAICRY 257 (437)
Q Consensus 179 ~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~~~s~i~vea~Kk~iLv~Lil~G~~~~lp~~~s~~~~r~ 257 (437)
..++..+.++|+||.|++++.+++|.+|+++|..|++ +|.. .......++|.+|.+.| +.|++|+.+.+ +.
T Consensus 6 ~~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~-~~~~k~~IL~yLIp~~L-l~G~iP~~~ll------~~ 77 (203)
T 3t5x_A 6 DDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS-SQKNKRMILIYLLPVKM-LLGHMPTVELL------KK 77 (203)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHH-HTTCEECHHHH------HH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh-HHHHHHHHHHHHHHHHH-HcCCCCCHHHh------hh
Confidence 3567889999999999999999999999999999999 6754 34566677777777777 57888764332 22
Q ss_pred hccCCHHHHHHHHHHhcCCHHHHHHHHHhccccccccchhhHHHHHHHHHHHHHHHHHHH--hhccccHHHHHHHhCCC-
Q psy9642 258 IKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLTKQIVASLYKNNIKRLTK--TFLTLSLADVASRVQLG- 334 (437)
Q Consensus 258 ~k~~~~pY~~L~~af~~~d~~~~~~~~~~~~~~f~~D~n~~Lv~~l~~~v~r~~I~~l~k--~Ys~IsL~dIa~~l~L~- 334 (437)
++ ..+|.+|++|+++||+..|++++++|++.|.+||++.++++++..+.|..+|++.. .|++|++++|+..++++
T Consensus 78 ~~--~~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~ 155 (203)
T 3t5x_A 78 YH--LMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQ 155 (203)
T ss_dssp TT--CGGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTT
T ss_pred Cc--hhHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcC
Confidence 33 45899999999999999999999999999999999999999999999999999987 49999999999999763
Q ss_pred ----ChHHHHHHHHHhHHcCceEEEEecCCCEEEEccC
Q psy9642 335 ----TPVQAEIYILKMISQNEIYATINKKDGMVVFNDN 368 (437)
Q Consensus 335 ----~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~ 368 (437)
+.+|+|++|++||.+|.|+|+|||++|+|+++..
T Consensus 156 ~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~ 193 (203)
T 3t5x_A 156 VEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQ 193 (203)
T ss_dssp CTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCC
Confidence 5899999999999999999999999999999854
No 4
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.92 E-value=3e-24 Score=218.64 Aligned_cols=261 Identities=15% Similarity=0.157 Sum_probs=192.9
Q ss_pred HHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH-HHhhHHHH
Q psy9642 128 LIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL-ALKNYERA 206 (437)
Q Consensus 128 ~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~-~~k~y~~A 206 (437)
-++.-+.++| .+..+--+|+...+.+...+++..+-..+..--..... -..++.-...+..++|++++ ..++|.+|
T Consensus 124 ~l~~~~~~~d-d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a--i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A 200 (394)
T 3txn_A 124 QLLRELKKLD-DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA--IYCPPKVQGALDLQSGILHAADERDFKTA 200 (394)
T ss_dssp HHHHHHTTSS-CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHhccc-cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc--CCCCHHHHHHHHHHhhHHHHHhccCHHHH
Confidence 3444444454 36788889999999999999999886666554322111 12567889999999999999 89999999
Q ss_pred HHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhCCCCCCCcccc-HHHhHhhccCCHHHHHHHHHHhcCCHHHHHHHHH
Q psy9642 207 LYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVYGKAPNLPKNVS-QAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLL 285 (437)
Q Consensus 207 ~~~~~~ai~~P~~~~s~i~vea~Kk~iLv~Lil~G~~~~lp~~~s-~~~~r~~k~~~~pY~~L~~af~~~d~~~~~~~~~ 285 (437)
..+|..++++.....++...++.|+.+|+.+ +.+..+.+..+.+ +...+...+...+|.+|+.+|..+|+..|..+++
T Consensus 201 ~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~ 279 (394)
T 3txn_A 201 FSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-MLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALK 279 (394)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-HTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHH-HcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999988777777888899988777666 5555545433322 2122222244678999999999999999999999
Q ss_pred hccccccccchhh-HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEE
Q psy9642 286 KYADVFSRDENTG-LTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVV 364 (437)
Q Consensus 286 ~~~~~f~~D~n~~-Lv~~l~~~v~r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~ 364 (437)
.+++.|..|.... .+..+++++++++++++.++|++|++++||+.+|++ ++++|..|++||.+|.|+|+||+++|+|+
T Consensus 280 ~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~~lI~dg~I~a~IDq~~giv~ 358 (394)
T 3txn_A 280 EYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLSQMILDKKFSGILDQGEGVLI 358 (394)
T ss_dssp HSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSSCEEEETTTTEEE
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHHHHHHCCCeeEEEcCCCCEEE
Confidence 9999999999864 689999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred EccCCCC---CC-chHHHHHHHHHHHHHHHHHH
Q psy9642 365 FNDNPQR---FN-NPLTFAQIESNIRACMHLDG 393 (437)
Q Consensus 365 F~~~~~~---~~-~~e~~~~l~~~i~~~~~L~~ 393 (437)
|.++++. |. .-+..+.|...|..+.+-.+
T Consensus 359 ~~~~~~r~~~y~~ale~l~~ls~vVd~L~~~~~ 391 (394)
T 3txn_A 359 VFEETPVDKTYERVLETIQSMGKVVDTLYQKAK 391 (394)
T ss_dssp ECCC-----------------------------
T ss_pred ECCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9877532 22 23777888888776665443
No 5
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5e-23 Score=212.93 Aligned_cols=216 Identities=14% Similarity=0.126 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhc--CCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc--ccccc-
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIAN--EGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT--TPALA- 220 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~--~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~--~P~~~- 220 (437)
+-..++++|.+-+....+-.++.. |..-.. .-...+..+.++|+||.|++++.+.+|.+|+++|..|+. +|..+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~-i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~ 256 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKN-FQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLT 256 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHT-HHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-hccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcccc
Confidence 345667899999998888666532 222111 112457789999999999999999999999999999998 48654
Q ss_pred ---cCHHHHHHHHHHHHHHHHHhCCCCCCCccccHHHhHhhccCCHH-HHHHHHHHhcCCHHHHHHHHHhccccccccch
Q psy9642 221 ---VSHIMLEGYKKYLLIYLIVYGKAPNLPKNVSQAICRYIKPLSQP-YLDLVSVYTNNNSTELQHLLLKYADVFSRDEN 296 (437)
Q Consensus 221 ---~s~i~vea~Kk~iLv~Lil~G~~~~lp~~~s~~~~r~~k~~~~p-Y~~L~~af~~~d~~~~~~~~~~~~~~f~~D~n 296 (437)
.......++|.+|.+.|+ .|++|+..- ..+.+.+.+.+ |.+|++|++.||+..|.+++++|++.|.+||+
T Consensus 257 ~~~~~~n~~~ILkyLIpv~LL-lG~~P~~~l-----l~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gi 330 (455)
T 3t5v_B 257 NQAITRNGTRILNYMIPTGLI-LGKMVKWGP-----LRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQL 330 (455)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCCBCHHH-----HGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTC
T ss_pred chhhhhHHHHHHHHHHHHHHH-cCCCCCHHH-----HcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCC
Confidence 245666788888888885 599876432 23322123566 99999999999999999999999999999999
Q ss_pred -hhHHHHHHHHHHHHHHHHH----HHhh--ccccHHHHHHHhCC--------------------CChHHHHHHHHHhHHc
Q psy9642 297 -TGLTKQIVASLYKNNIKRL----TKTF--LTLSLADVASRVQL--------------------GTPVQAEIYILKMISQ 349 (437)
Q Consensus 297 -~~Lv~~l~~~v~r~~I~~l----~k~Y--s~IsL~dIa~~l~L--------------------~~~~eaE~~l~~mI~~ 349 (437)
+.++++++..++|..+|++ ...| ++|++++|+..+++ .+.+|+|++|++||.+
T Consensus 331 ly~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~ 410 (455)
T 3t5v_B 331 LIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINL 410 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHc
Confidence 9999999999999999998 5668 89999999999985 2578999999999999
Q ss_pred CceEEEEecCCCEEEEccC
Q psy9642 350 NEIYATINKKDGMVVFNDN 368 (437)
Q Consensus 350 G~I~A~Id~~~g~v~F~~~ 368 (437)
|.|+|+|+|+.++|++++.
T Consensus 411 G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 411 GLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp TSCCEEEETTTTEEEECCC
T ss_pred CCeEEEEecCCCEEEECCC
Confidence 9999999999999999876
No 6
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2e-18 Score=173.80 Aligned_cols=253 Identities=14% Similarity=0.166 Sum_probs=188.2
Q ss_pred HHHhhhCCCCcchHHHHHHHHHhCCC--CcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHH
Q psy9642 114 KTVMDLKTPQRGIPLIQTAIKKIQTS--DSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFY 191 (437)
Q Consensus 114 ~~~~~~~~~~~~i~~l~~ai~rl~~~--~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Y 191 (437)
....+.+..-.++..+..++...... ......++..++++|+..++|..|..++.+-..-... ...++.....++.
T Consensus 143 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~ 220 (434)
T 4b4t_Q 143 TLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS--IYCPTQTVAELDL 220 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHH
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc--CCCchHHHHHHHH
Confidence 33344555556677777776654332 4556779999999999999999998887765443221 1224556789999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhcccccc----cCHHHHHHHHHHHHHHHHHhCCCCCCCcc-ccHHHhHh-hccCCHHH
Q psy9642 192 YGGMIYLALKNYERALYFFEVIITTPALA----VSHIMLEGYKKYLLIYLIVYGKAPNLPKN-VSQAICRY-IKPLSQPY 265 (437)
Q Consensus 192 y~G~I~~~~k~y~~A~~~~~~ai~~P~~~----~s~i~vea~Kk~iLv~Lil~G~~~~lp~~-~s~~~~r~-~k~~~~pY 265 (437)
+.|.++...++|.+|+.+|..++.++... .......+.+..++... +.+........ .+....+. ..+..+.|
T Consensus 221 ~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (434)
T 4b4t_Q 221 MSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKI-MLNLIDDVKNILNAKYTKETYQSRGIDAM 299 (434)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHCSSSSTTCCCHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH-hccchhHHHhHHHHHHHHHHhcchhhhHH
Confidence 99999999999999999999999865432 12355566655555444 33221111000 00000000 01225789
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccccccccchh-hHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHHH
Q psy9642 266 LDLVSVYTNNNSTELQHLLLKYADVFSRDENT-GLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYIL 344 (437)
Q Consensus 266 ~~L~~af~~~d~~~~~~~~~~~~~~f~~D~n~-~Lv~~l~~~v~r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~ 344 (437)
..++.+|..+++..|...+..+...+..|... ..+..+..++++++++++.++|++|++++||+.++++ ++++|..|+
T Consensus 300 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~E~~l~ 378 (434)
T 4b4t_Q 300 KAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQVEGKLS 378 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHHHHHHH
Confidence 99999999999999999999999999998865 5899999999999999999999999999999999997 899999999
Q ss_pred HhHHcCceEEEEecCCCEEEEccCCC
Q psy9642 345 KMISQNEIYATINKKDGMVVFNDNPQ 370 (437)
Q Consensus 345 ~mI~~G~I~A~Id~~~g~v~F~~~~~ 370 (437)
+||.+|.|+|+||+++|+|.|.++.+
T Consensus 379 ~lI~~~~i~a~id~~~g~v~~~~~~~ 404 (434)
T 4b4t_Q 379 QMILDKIFYGVLDQGNGWLYVYETPN 404 (434)
T ss_dssp HHHHHTSSCCEEETTTTEEECC----
T ss_pred HHHhCCCcceecccccCeEeeCCCcc
Confidence 99999999999999999999987654
No 7
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.6e-18 Score=179.03 Aligned_cols=247 Identities=16% Similarity=0.104 Sum_probs=185.7
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.|.--.++..+..+. ..-.++.+.-.+...++|+|+..++|..+...+.+--..+.. .-++....+|..|+|++++
T Consensus 144 ~Gd~~~A~~~~~~~~-~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~---~~d~~~~~~lk~~~gl~~l 219 (429)
T 4b4t_R 144 IGDKDNAEKTLGKSL-SKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK---GGDWERRNRYKTYYGIHCL 219 (429)
T ss_dssp HCCCTTHHHHHHHHH-HHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT---CCCTHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc---CCCHHHHHHHHHHHHHHHH
Confidence 344445566665543 334556777779999999999999999997777764332222 1245567799999999999
Q ss_pred HHhhHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhCCCCCCCc-cccHHHhHhhc--cCCHHHHHHHHHHhcC
Q psy9642 199 ALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVYGKAPNLPK-NVSQAICRYIK--PLSQPYLDLVSVYTNN 275 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~~P~~~~s~i~vea~Kk~iLv~Lil~G~~~~lp~-~~s~~~~r~~k--~~~~pY~~L~~af~~~ 275 (437)
+.++|.+|..+|..++.++............++.+|++++.........+ +.++.+...+. +.+.++.+++.+|-.+
T Consensus 220 ~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~ 299 (429)
T 4b4t_R 220 AVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYAS 299 (429)
T ss_dssp GTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHT
T ss_pred HhChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhc
Confidence 99999999999999999888766666777788888888865432211111 12333333332 2345677888888888
Q ss_pred CHHHHH-HHHHhccccccccchh-hHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceE
Q psy9642 276 NSTELQ-HLLLKYADVFSRDENT-GLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIY 353 (437)
Q Consensus 276 d~~~~~-~~~~~~~~~f~~D~n~-~Lv~~l~~~v~r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~ 353 (437)
+...+- ...+.+...+..|... ..+..+..+++.++++.+.++|++|+++.+|+.+|++ ++++|..|++||.+|.|+
T Consensus 300 ~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~~lI~~g~l~ 378 (429)
T 4b4t_R 300 DYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLGKFIPNKQLN 378 (429)
T ss_dssp CHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSSC
T ss_pred cHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHcCCeE
Confidence 877754 4556666666767644 4699999999999999999999999999999999998 899999999999999999
Q ss_pred EEEecCCCEEEEccCCC
Q psy9642 354 ATINKKDGMVVFNDNPQ 370 (437)
Q Consensus 354 A~Id~~~g~v~F~~~~~ 370 (437)
|+||+.+|+|.+.++.+
T Consensus 379 akID~~~giv~~~~~d~ 395 (429)
T 4b4t_R 379 CVIDRVNGIVETNRPDN 395 (429)
T ss_dssp EEEETTTTEEEECC---
T ss_pred EEEcCCCCEEEECCCCc
Confidence 99999999999987654
No 8
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.49 E-value=4e-14 Score=113.07 Aligned_cols=70 Identities=16% Similarity=0.341 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEccCCC
Q psy9642 300 TKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDNPQ 370 (437)
Q Consensus 300 v~~l~~~v~r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~~~ 370 (437)
+..+..++++|||++++++|++|+++++|++++|+ ++++|.+|++||.+|+|+|+|||++|+|.|.++.+
T Consensus 9 ~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 9 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 44567899999999999999999999999999998 89999999999999999999999999999986543
No 9
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1e-12 Score=134.01 Aligned_cols=216 Identities=13% Similarity=0.121 Sum_probs=151.0
Q ss_pred HHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc--ccccCHH
Q psy9642 147 HSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTP--ALAVSHI 224 (437)
Q Consensus 147 h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~~P--~~~~s~i 224 (437)
-....+..+..++...|-.++++--..+.. ....++.-...||+..|..+...++|..++.++...+.+. ....+..
T Consensus 130 ~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~-~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~ 208 (393)
T 4b4t_O 130 DSEIARTYLLKNDLVKARDLLDDLEKTLDK-KDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLA 208 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-SCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhc-cCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHH
Confidence 345567888899999998888775443332 3456677789999999999999999999999988888743 3445665
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcc-ccHHHhHhhc--cCCHHHHHHHHHHhcCCHHHHHHHHHhccccccccchhhH-H
Q psy9642 225 MLEGYKKYLLIYLIVYGKAPNLPKN-VSQAICRYIK--PLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGL-T 300 (437)
Q Consensus 225 ~vea~Kk~iLv~Lil~G~~~~lp~~-~s~~~~r~~k--~~~~pY~~L~~af~~~d~~~~~~~~~~~~~~f~~D~n~~L-v 300 (437)
-..+.+..++++.++...++++... ..|.+ +.++ +...+|.+|..+|..|++.+|.+....+.+.+. ..+. .
T Consensus 209 ~~~~~a~~l~~~all~~~i~~f~eLL~~p~i-~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~---~l~~~~ 284 (393)
T 4b4t_O 209 ERQQLAYDLSISALLGDKIYNFGELLHHPIM-ETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIP---ILAQHE 284 (393)
T ss_dssp HHHHHHHHHHHHHHHCCSSCSTHHHHHSCCT-TSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSH---HHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCChHHHhCChHH-HHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCc---chhhhH
Confidence 5666666777777776666655322 11111 1122 235689999999999999999987766544321 1111 1
Q ss_pred HHHHHHHHHHHHHHHH--HhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEccC
Q psy9642 301 KQIVASLYKNNIKRLT--KTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDN 368 (437)
Q Consensus 301 ~~l~~~v~r~~I~~l~--k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~ 368 (437)
..+++.+.-..+..+. +.|.+|++++||+.++++ ++++|.+|.+||.+|.|.|+|||.+|+|.|...
T Consensus 285 ~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~ 353 (393)
T 4b4t_O 285 SFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLP-KDNVEHLVMRAISLGLLKGSIDQVNELVTISWV 353 (393)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHHHHHHHHHHHHSCSSSCEETTTTEECC---
T ss_pred HHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEec
Confidence 1122222222333333 457899999999999997 899999999999999999999999999999753
No 10
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.92 E-value=2.4e-08 Score=94.36 Aligned_cols=202 Identities=12% Similarity=0.059 Sum_probs=136.4
Q ss_pred HHHHHhCCchHHHhhhhHh---hhhhhcCCCCCChH--hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc--ccCH
Q psy9642 152 QLCLLAQNFKPALEFLDVD---ITTIANEGPQFDTK--YFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL--AVSH 223 (437)
Q Consensus 152 ~l~L~~~~y~~Al~il~~~---I~~~~~~~~~~~~~--~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~--~~s~ 223 (437)
+-.+..++|+.+.++|++- .+....-.+..+.+ ...++-|+.|.+.+...++.++++-+...+. .|.. ..++
T Consensus 15 ~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s~ 94 (229)
T 4b0z_A 15 ADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPSS 94 (229)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCCT
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCCc
Confidence 4456788999998888762 22211111112233 3678889988888888777777666666665 5554 3355
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCccccHHHhH-hhc--cCCHHHHHHHHHHhcCCHHHHHHHHHhccccccccchhhHH
Q psy9642 224 IMLEGYKKYLLIYLIVYGKAPNLPKNVSQAICR-YIK--PLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLT 300 (437)
Q Consensus 224 i~vea~Kk~iLv~Lil~G~~~~lp~~~s~~~~r-~~k--~~~~pY~~L~~af~~~d~~~~~~~~~~~~~~f~~D~n~~Lv 300 (437)
...+..+..+| .++..|.++.+.........+ .++ +.+.++.++.+++..||..+|-+...+.... ...-++
T Consensus 95 ~~~e~~~~~LL-~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~----~~~~~~ 169 (229)
T 4b0z_A 95 RMGLVTGLNLL-YLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFP----EFSYFM 169 (229)
T ss_dssp THHHHHHHHHH-HHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCG----GGHHHH
T ss_pred cHHHHHHHHHH-HHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccc----hHHHHH
Confidence 56665555554 677888887654331110000 011 1256778999999999999998887765322 122478
Q ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEc
Q psy9642 301 KQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFN 366 (437)
Q Consensus 301 ~~l~~~v~r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~ 366 (437)
..+..+++...++.+.++|.+||++++++.|+++++++++.++.+- |. .|+ +|.|.|.
T Consensus 170 ~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~---gw---~i~--dg~i~F~ 227 (229)
T 4b0z_A 170 KIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEER---GW---DIR--DGVIYFP 227 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHH---TC---EEE--TTEEECC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHc---CC---EEe--CCEEecC
Confidence 8999999999999999999999999999999999999999998872 31 232 6666665
No 11
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.17 E-value=1.2e-05 Score=72.26 Aligned_cols=97 Identities=9% Similarity=0.167 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHhcCCHHHHHHHHHhccccccccchhhHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHhCCCChHHHHH
Q psy9642 262 SQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEI 341 (437)
Q Consensus 262 ~~pY~~L~~af~~~d~~~~~~~~~~~~~~f~~D~n~~Lv~~l~~~v~r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~ 341 (437)
-.+|.+|.++|..|++..|.+....+ -+|...+.+-++.=.+..++..-..|+.++|++.+++++.+|+|.
T Consensus 59 ~~~~~~LL~iF~~G~~~~y~~~~~~~---------p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~ 129 (169)
T 3chm_A 59 DSVYLDLLRLFAHGTWGDYKCNATRL---------PHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELED 129 (169)
T ss_dssp THHHHHHHHHHHHCCHHHHHHHGGGS---------CCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHH
T ss_pred hhHHHHHHHHHhcCCHHHHHHhHHhC---------cchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHH
Confidence 46899999999999999998853222 134455555555555566666678999999999999998899999
Q ss_pred HHH-HhHHcCceEEEEecCCCEEEEcc
Q psy9642 342 YIL-KMISQNEIYATINKKDGMVVFND 367 (437)
Q Consensus 342 ~l~-~mI~~G~I~A~Id~~~g~v~F~~ 367 (437)
+|. ++|..|-|.|+|||.++.|....
T Consensus 130 lvI~~ai~~gLI~gkiDQ~~~~v~V~~ 156 (169)
T 3chm_A 130 FLINECMYAGIVRGKLDQLKRCFEVPF 156 (169)
T ss_dssp HHHHTHHHHTSEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHhCCeEEEEcCcCCEEEEEe
Confidence 999 99999999999999999988763
No 12
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.70 E-value=0.11 Score=41.45 Aligned_cols=94 Identities=10% Similarity=-0.046 Sum_probs=69.1
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. .|........+..+..++...++|..|+..+.+-+..... .......+|..|.++.
T Consensus 15 ~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 15 NGKYDDASQLFLSFLEL-YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT------HDKAAGGLLKLGLSQY 87 (129)
T ss_dssp TTCHHHHHHHHHHHHHH-CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------STTHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHH-CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC------CcccHHHHHHHHHHHH
Confidence 45555667777777655 4544433456778889999999999999998886653111 1113556788899999
Q ss_pred HHhhHHHHHHHHHHHhc-cccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.+++|.+|..+|+.++. .|..
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTS
T ss_pred HcCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999998 6754
No 13
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.45 E-value=0.84 Score=41.78 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=77.7
Q ss_pred hhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHH
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIY 197 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~ 197 (437)
..+..-.++..+..++..-..++......+..+...+...++|..|+..+.+-+...... -+.......++..|.++
T Consensus 17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI---GDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---cccHHHHHHHHHHHHHH
Confidence 355566678888888776333233345678888999999999999999988755432211 13445677888899999
Q ss_pred HHHhhHHHHHHHHHHHhc-ccccccCHHHHHHHHH
Q psy9642 198 LALKNYERALYFFEVIIT-TPALAVSHIMLEGYKK 231 (437)
Q Consensus 198 ~~~k~y~~A~~~~~~ai~-~P~~~~s~i~vea~Kk 231 (437)
...++|.+|..+|..++. .|..........++..
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 128 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN 128 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 999999999999999998 5544323333444433
No 14
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.43 E-value=0.055 Score=43.43 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=66.1
Q ss_pred CCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHH
Q psy9642 120 KTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLA 199 (437)
Q Consensus 120 ~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~ 199 (437)
+..-.++..+..|+.. .++.......+..+..++...++|..|+..+.+-+.. .+. ....++.-|+++..
T Consensus 4 g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~-~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPN-HQALRVFYAMVLYN 73 (117)
T ss_dssp ---CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT-CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC-chHHHHHHHHHHHH
Confidence 3445677777777643 1112234557888899999999999999999887653 121 35667788999999
Q ss_pred HhhHHHHHHHHHHHhc-cccc
Q psy9642 200 LKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 200 ~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.++|.+|..+|..++. .|..
T Consensus 74 ~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HTCHHHHHHHHHHHHHHHCCC
T ss_pred cCCHHHHHHHHHHHHHhCCCc
Confidence 9999999999999998 5654
No 15
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.36 E-value=0.64 Score=43.62 Aligned_cols=206 Identities=12% Similarity=0.118 Sum_probs=120.4
Q ss_pred cHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHhCCCCc--chhhHHHHHHHHHH
Q psy9642 78 YQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQTSDS--QLTSLHSDLCQLCL 155 (437)
Q Consensus 78 ~~~~~~~~~~~fl~~fd~~Qir~a~~~~~~l~~~~~~~~~~~~~~~~~i~~l~~ai~rl~~~~~--~lT~~h~~l~~l~L 155 (437)
+....+.+........+.. .-++..|..+.. .....+.+-.++..+..|+.-....+. .....+..+..++.
T Consensus 55 ~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~----~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 55 LAGDSFLKAADYQKKAGNE--DEAGNTYVEAYK----CFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHH----HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4445555555554433211 112334444333 333456667788888888776533222 22345667778888
Q ss_pred Hh-CCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-ccccccCH-HHHHHHHHH
Q psy9642 156 LA-QNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPALAVSH-IMLEGYKKY 232 (437)
Q Consensus 156 ~~-~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~~~s~-i~vea~Kk~ 232 (437)
.. ++|..|+....+-+.-..... +.......+.--|.++..+++|.+|..+|+.++. .|...... ...+++-..
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQ---SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 86 999999999888665322211 1222345566779999999999999999999999 55543221 233344444
Q ss_pred HHHHHHHhCCCCCCCccccHHHhHhhc--------cCCHHHHHHHHHHhcCCHHHHHHHHHhccccccccchh
Q psy9642 233 LLIYLIVYGKAPNLPKNVSQAICRYIK--------PLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENT 297 (437)
Q Consensus 233 iLv~Lil~G~~~~lp~~~s~~~~r~~k--------~~~~pY~~L~~af~~~d~~~~~~~~~~~~~~f~~D~n~ 297 (437)
.++.+ ..|+...- -....+.++ .....+..+..++..++..+|.+.+..+.....-|...
T Consensus 206 g~~~~-~~g~~~~A----~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 206 GLCQL-AATDAVAA----ARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHH-HTTCHHHH----HHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHH-HcCCHHHH----HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 44333 44443210 000111111 01234567888998899999999999987776666544
No 16
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.10 E-value=0.26 Score=41.65 Aligned_cols=90 Identities=7% Similarity=-0.058 Sum_probs=67.6
Q ss_pred hhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 117 MDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 117 ~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
...+..-.++..++.++.. +|.. ...+..+..++...++|..|+...++-+.- . + +....+|+.|.+
T Consensus 32 ~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~-------p-~~~~~~~~lg~~ 98 (148)
T 2vgx_A 32 YQSGXYEDAHXVFQALCVL-DHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVM-D-------I-XEPRFPFHAAEC 98 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-------T-TCTHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHc-Cccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-------C-CCchHHHHHHHH
Confidence 3345556677777777644 5543 335677888999999999999999887652 1 1 234566888999
Q ss_pred HHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 197 YLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 197 ~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
+...++|.+|..+|+.++. .|..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCC
Confidence 9999999999999999998 6754
No 17
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=94.98 E-value=0.26 Score=40.76 Aligned_cols=90 Identities=11% Similarity=-0.011 Sum_probs=67.1
Q ss_pred hhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHH
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIY 197 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~ 197 (437)
..+..-.++..+..++. ++|.. ...+..+..++...++|..|+...++-+.. . + +....+|..|.++
T Consensus 30 ~~g~~~~A~~~~~~al~-~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-------p-~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 30 QAGKWDDAQKIFQALCM-LDHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALM-D-------I-NEPRFPFHAAECH 96 (142)
T ss_dssp HTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCTHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHH-hCCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-------C-CCcHHHHHHHHHH
Confidence 34555566777777664 45543 235677888999999999999999887653 1 1 2345668899999
Q ss_pred HHHhhHHHHHHHHHHHhc-ccccc
Q psy9642 198 LALKNYERALYFFEVIIT-TPALA 220 (437)
Q Consensus 198 ~~~k~y~~A~~~~~~ai~-~P~~~ 220 (437)
...++|.+|..+|+.++. .|...
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999998 67543
No 18
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.97 E-value=0.11 Score=42.16 Aligned_cols=91 Identities=11% Similarity=0.098 Sum_probs=66.8
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+....++..+..++. ++|........+..+..++...++|..|+..+.+-+.. . + +....+|..|.++.
T Consensus 41 ~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-------~-~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 41 CGDYGGALAAYTQALG-LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-D-------G-GDVKALYRRSQALE 110 (148)
T ss_dssp TTCHHHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-T-------S-CCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH-HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-C-------c-cCHHHHHHHHHHHH
Confidence 3444455666666543 34543334567888889999999999999998886653 1 1 13566788999999
Q ss_pred HHhhHHHHHHHHHHHhc-cccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..++|.+|..+|..++. .|..
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 111 KLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHTCHHHHHHHHHHHHHHCSSC
T ss_pred HcCCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999998 6754
No 19
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=94.90 E-value=1.8 Score=41.12 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=77.4
Q ss_pred hhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 117 MDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 117 ~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
...+..-.++..+..++..-..++..+...+..+..++...++|..|+..+.+-+...... -+.......++..|.+
T Consensus 20 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 96 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI---GDQLGEAKASGNLGNT 96 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHH
Confidence 3345556677777777766333334445678888999999999999999888765432221 1345577888899999
Q ss_pred HHHHhhHHHHHHHHHHHhc-ccccccCHHHHHHH
Q psy9642 197 YLALKNYERALYFFEVIIT-TPALAVSHIMLEGY 229 (437)
Q Consensus 197 ~~~~k~y~~A~~~~~~ai~-~P~~~~s~i~vea~ 229 (437)
+...++|.+|..+|..++. .|..........++
T Consensus 97 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 130 (406)
T 3sf4_A 97 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL 130 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 9999999999999999998 55543223333344
No 20
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=94.89 E-value=0.26 Score=41.66 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=68.3
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. +|.. ...+..+..+++..++|..|+..+.+-+.. . + +....+|..|.++.
T Consensus 24 ~g~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-------p-~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 24 RKEYSKAIDLYTQALSI-APAN---PIYLSNRAAAYSASGQHEKAAEDAELATVV-D-------P-KYSKAWSRLGLARF 90 (164)
T ss_dssp TTCHHHHHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh-CCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C-------C-CCHHHHHHHHHHHH
Confidence 44445567777777654 4432 347788889999999999999998887653 1 1 24677889999999
Q ss_pred HHhhHHHHHHHHHHHhc-ccccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPALA 220 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~~~ 220 (437)
.+++|.+|..+|..++. .|...
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HccCHHHHHHHHHHHHHhCCCch
Confidence 99999999999999999 67664
No 21
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=94.89 E-value=0.084 Score=44.75 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 143 LTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 143 lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
...++..+..+++..++|..|+...++-+.- . + .....+|..|.++..+++|.+|..+|..++. .|..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~-~-------p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKR-E-------E-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-S-------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-C-------C-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 3457888889999999999999988887653 1 2 2566788999999999999999999999999 7765
No 22
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=94.88 E-value=1.4 Score=41.15 Aligned_cols=114 Identities=12% Similarity=0.127 Sum_probs=78.7
Q ss_pred hhhCCCCcchHHHHHHHHHhC--CCCcc-hhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHH
Q psy9642 117 MDLKTPQRGIPLIQTAIKKIQ--TSDSQ-LTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYG 193 (437)
Q Consensus 117 ~~~~~~~~~i~~l~~ai~rl~--~~~~~-lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~ 193 (437)
...+..-.++..+..|+...+ |.... .......+..++...++|..|+..+++-+.-..... +.......+|..
T Consensus 166 ~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~---~~~~~~~~~~~l 242 (293)
T 2qfc_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN---SMALIGQLYYQR 242 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---BCSSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 335666678888888884332 22222 236778889999999999999999988664321111 112246678899
Q ss_pred HHHHHHHhhHHHH-HHHHHHHhcccccccCHHHHHHHHHHH
Q psy9642 194 GMIYLALKNYERA-LYFFEVIITTPALAVSHIMLEGYKKYL 233 (437)
Q Consensus 194 G~I~~~~k~y~~A-~~~~~~ai~~P~~~~s~i~vea~Kk~i 233 (437)
|.++..+++|++| ..+|..|+..-....+..+.+.+..+|
T Consensus 243 g~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~~~~~~~~ 283 (293)
T 2qfc_A 243 GECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKI 283 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHH
Confidence 9999999999999 888999998544444555555555443
No 23
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=94.87 E-value=0.2 Score=43.06 Aligned_cols=128 Identities=13% Similarity=0.141 Sum_probs=86.8
Q ss_pred cHHHHHHHHHHHHHhcCh-hh-hhhhHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHH
Q psy9642 78 YQEELFSQIQEFLNMCNP-DQ-IRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCL 155 (437)
Q Consensus 78 ~~~~~~~~~~~fl~~fd~-~Q-ir~a~~~~~~l~~~~~~~~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L 155 (437)
+.+.+-..+.+|+..-.. .+ +..-|+....+. .+...+...+..-.++..++.++.. +|.. ...|..+..++.
T Consensus 7 ~~~~~~~~l~~~~~~~~~l~~al~l~p~~~~~~~-~lg~~~~~~g~~~eA~~~~~~al~~-~P~~---~~~~~~lg~~~~ 81 (151)
T 3gyz_A 7 ENESISTAVIDAINSGATLKDINAIPDDMMDDIY-SYAYDFYNKGRIEEAEVFFRFLCIY-DFYN---VDYIMGLAAIYQ 81 (151)
T ss_dssp --CHHHHHHHHHHHTSCCTGGGCCSCHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHH
Confidence 445667788888875322 12 234444332221 1223344466667788888887644 5543 236778889999
Q ss_pred HhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 156 LAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 156 ~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..+.|..|+...++-+.- . |. ....+|.-|.++..+++|++|..+|+.++. .|..
T Consensus 82 ~~g~~~~Ai~~~~~al~l-~-------P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFAL-G-------KN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH-S-------SS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHccHHHHHHHHHHHHhh-C-------CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 999999999999887753 2 11 345678899999999999999999999999 6654
No 24
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=94.85 E-value=0.46 Score=37.17 Aligned_cols=92 Identities=11% Similarity=0.157 Sum_probs=67.5
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++... |.. ...+..+..++...++|..|+..+.+-+...... .-........++..|.++.
T Consensus 17 ~~~~~~A~~~~~~a~~~~-~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~ 90 (131)
T 1elr_A 17 KKDFDTALKHYDKAKELD-PTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--REDYRQIAKAYARIGNSYF 90 (131)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-Ccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHHHHH
Confidence 455566777777777653 332 3467788889999999999999988866532221 1122223677888999999
Q ss_pred HHhhHHHHHHHHHHHhcc
Q psy9642 199 ALKNYERALYFFEVIITT 216 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~~ 216 (437)
..++|.+|..+|..++..
T Consensus 91 ~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 91 KEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 999999999999999994
No 25
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=94.76 E-value=0.77 Score=37.03 Aligned_cols=130 Identities=13% Similarity=0.042 Sum_probs=84.4
Q ss_pred cHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHhCCC--CcchhhHHHHHHHHHH
Q psy9642 78 YQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQTS--DSQLTSLHSDLCQLCL 155 (437)
Q Consensus 78 ~~~~~~~~~~~fl~~fd~~Qir~a~~~~~~l~~~~~~~~~~~~~~~~~i~~l~~ai~rl~~~--~~~lT~~h~~l~~l~L 155 (437)
+....+.+............. ....+..++ ......+..-.++..+..++...... +......+..+..++.
T Consensus 27 ~A~~~~~~al~~~~~~~~~~~--~~~~~~~l~----~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (164)
T 3ro3_A 27 DAVIAHEQRLLIAKEFGDKAA--ERIAYSNLG----NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 100 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCHHH--HHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchH--HHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 344566666666654222111 112233322 33333556667778888877665332 2333556778889999
Q ss_pred HhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q psy9642 156 LAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITT 216 (437)
Q Consensus 156 ~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~~ 216 (437)
..++|..|+..+.+-+....... +.......++.-|.++...++|.+|.++|..++..
T Consensus 101 ~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 101 LLQDYEKAIDYHLKHLAIAQELK---DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHcc---chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999888665432211 34456777788999999999999999999999873
No 26
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=94.75 E-value=0.48 Score=38.35 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=67.4
Q ss_pred hCCCCcchHHHHHHHHHhCC--CCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQT--SDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~--~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
.+.+-.++..+..++..... .+......+..+..++...++|..|+..+.+-+...... -++......++.-|.+
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~ 98 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL---KDRAVEAQSCYSLGNT 98 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHH
Confidence 34445566666666555432 223334567778899999999999999988865543221 1344467778889999
Q ss_pred HHHHhhHHHHHHHHHHHhcc
Q psy9642 197 YLALKNYERALYFFEVIITT 216 (437)
Q Consensus 197 ~~~~k~y~~A~~~~~~ai~~ 216 (437)
+...++|++|..+|..++..
T Consensus 99 ~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 99 YTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999873
No 27
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.52 E-value=0.28 Score=40.15 Aligned_cols=94 Identities=13% Similarity=0.218 Sum_probs=69.3
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..|+. ++|.. ...+..+..+++..++|..|+....+-|.- .+. ..........-++..|.++.
T Consensus 21 ~~~~~~A~~~y~~Al~-~~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~-~~~-~~~~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 21 QKDFEKAHVHYDKAIE-LDPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVEV-GRE-TRADYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp TTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHH-TTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH-hCCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHh-Ccc-cchhhHHHHHHHHHHHHHHH
Confidence 4445567778887764 45543 346778889999999999999998886642 221 11234445667788999999
Q ss_pred HHhhHHHHHHHHHHHhc-ccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~ 218 (437)
.+++|.+|.++|..++. .|.
T Consensus 95 ~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 95 KQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HTTCHHHHHHHHHHHHHHSCC
T ss_pred HcCCHHHHHHHHHHHHhhCcC
Confidence 99999999999999998 453
No 28
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.52 E-value=1.1 Score=38.38 Aligned_cols=133 Identities=8% Similarity=-0.079 Sum_probs=87.6
Q ss_pred cHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHhCCCC---cchhhHHHHHHHHH
Q psy9642 78 YQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQTSD---SQLTSLHSDLCQLC 154 (437)
Q Consensus 78 ~~~~~~~~~~~fl~~fd~~Qir~a~~~~~~l~~~~~~~~~~~~~~~~~i~~l~~ai~rl~~~~---~~lT~~h~~l~~l~ 154 (437)
+....+.+........+.... .+..+..++ ......+..-.++..+..++......+ ......+..+..++
T Consensus 44 ~A~~~~~~al~~~~~~~~~~~--~~~~~~~l~----~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 117 (203)
T 3gw4_A 44 EARASFQALQQQAQKSGDHTA--EHRALHQVG----MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVA 117 (203)
T ss_dssp HHHHHHHHHHHHHHTTCCHHH--HHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHH--HHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 455667777776665432111 112233322 333345566677888888877754333 24566788889999
Q ss_pred HHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccc
Q psy9642 155 LLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPAL 219 (437)
Q Consensus 155 L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~~P~~ 219 (437)
...+++..|+..+.+-+...... -++......++..|.++...++|.+|.++|..++..-..
T Consensus 118 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 118 LHFGDLAGARQEYEKSLVYAQQA---DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999988866432221 123345555678899999999999999999999985433
No 29
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.49 E-value=0.49 Score=43.11 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=70.9
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. .|........+..+..++...++|..|+..+++-+..... ......-+|..|.++.
T Consensus 28 ~g~~~~A~~~~~~~l~~-~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~a~~~lg~~~~ 100 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTY-GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI------DPRVPQAEYERAMCYY 100 (261)
T ss_dssp TTCHHHHHHHHHHHGGG-CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CTTHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHh-CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC------CchhHHHHHHHHHHHH
Confidence 44455566666666554 4555455667888999999999999999999887664221 1234566788999999
Q ss_pred H--------HhhHHHHHHHHHHHhc-cccc
Q psy9642 199 A--------LKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~--------~k~y~~A~~~~~~ai~-~P~~ 219 (437)
. .++|.+|..+|..++. .|..
T Consensus 101 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 101 KLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp HHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 9 9999999999999998 7765
No 30
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=94.35 E-value=0.4 Score=36.78 Aligned_cols=88 Identities=13% Similarity=0.038 Sum_probs=65.3
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. +|.. ...+..+..++...++|..|+..+.+-+.. . + .....++.-|.++.
T Consensus 17 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-------~-~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKL-DPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-K-------P-DWGKGYSRKAAALE 83 (118)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHH-CCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHh-C-------c-ccHHHHHHHHHHHH
Confidence 45555667777777655 3432 346777888999999999999988876653 1 1 13456678899999
Q ss_pred HHhhHHHHHHHHHHHhc-cccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..++|.+|..+|..++. .|..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHhhHHHHHHHHHHHHHcCCCC
Confidence 99999999999999998 5654
No 31
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=94.32 E-value=0.32 Score=42.50 Aligned_cols=92 Identities=11% Similarity=0.054 Sum_probs=67.4
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcc------------hhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhh
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQ------------LTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYF 186 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~------------lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~ 186 (437)
.+....++..+..++.....++.. ....+..+..+++..++|..|+..+++-+.. . + +.
T Consensus 51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~-------p-~~ 121 (198)
T 2fbn_A 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-D-------K-NN 121 (198)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-------T-TC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-------c-cc
Confidence 344455666677766544322210 1256778889999999999999998887653 1 1 24
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 187 LQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 187 l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
...+|..|.++..+++|.+|..+|..++. .|..
T Consensus 122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 122 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 56788999999999999999999999998 6764
No 32
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=94.22 E-value=0.26 Score=40.38 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=68.1
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..|+.. +|.. ...+..+..+....++|..|+...++-|.- + + +....+|..|.++.
T Consensus 26 ~g~~~~A~~~~~~al~~-~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~-------p-~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKR-DPEN---AILYSNRAACLTKLMEFQRALDDCDTCIRL-D-------S-KFIKGYIRKAACLV 92 (126)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh-CCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHHh-h-------h-hhhHHHHHHHHHHH
Confidence 44455677777777644 5543 346778888999999999999998887652 1 2 24567889999999
Q ss_pred HHhhHHHHHHHHHHHhc-cccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.+++|++|..+|+.++. .|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC
T ss_pred HCCCHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999 7875
No 33
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=94.21 E-value=0.97 Score=35.11 Aligned_cols=88 Identities=10% Similarity=0.154 Sum_probs=65.0
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. +|.. ...+..+..++...++|..|+..+.+-+.. . +. ....++..|.++.
T Consensus 25 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-------~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 25 VENFEAAVHFYGKAIEL-NPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICI-D-------PA-YSKAYGRMGLALS 91 (131)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------TT-CHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhc-C-------cc-CHHHHHHHHHHHH
Confidence 44445566677776654 3332 336777888999999999999998887653 1 11 2456688899999
Q ss_pred HHhhHHHHHHHHHHHhc-cccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..++|.+|..+|..++. .|..
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccc
Confidence 99999999999999998 6654
No 34
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.28 Score=39.30 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=66.1
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. +|.. ...+..+..++...++|..|+...++-+.. . + +....+|..|.++.
T Consensus 17 ~~~~~~A~~~~~~al~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~-------p-~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 17 KSDWPNAVKAYTEMIKR-APED---ARGYSNRAAALAKLMSFPEAIADCNKAIEK-D-------P-NFVRAYIRKATAQI 83 (126)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-------C-CcHHHHHHHHHHHH
Confidence 45555677777777654 4433 357788889999999999999998887653 1 2 24567788999999
Q ss_pred HHhhHHHHHHHHHHHhc-cc
Q psy9642 199 ALKNYERALYFFEVIIT-TP 217 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P 217 (437)
.+++|.+|..+|+.++. .|
T Consensus 84 ~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDA 103 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCc
Confidence 99999999999999998 63
No 35
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.10 E-value=0.32 Score=39.48 Aligned_cols=88 Identities=10% Similarity=-0.052 Sum_probs=64.8
Q ss_pred hhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHH
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIY 197 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~ 197 (437)
..+....++..++.++.. +|.. ...+..+..++...+.+..|+..+.+-+.- . + +....++.-|.++
T Consensus 29 ~~g~~~~A~~~~~~al~~-~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~-------P-~~~~~~~~la~~~ 95 (121)
T 1hxi_A 29 KLANLAEAALAFEAVCQK-EPER---EEAWRSLGLTQAENEKDGLAIIALNHARML-D-------P-KDIAVHAALAVSH 95 (121)
T ss_dssp HTTCHHHHHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-------C-CCHHHHHHHHHHH
Confidence 345556677788777654 4533 336778888999999999999998876552 1 2 2445678899999
Q ss_pred HHHhhHHHHHHHHHHHhc-ccc
Q psy9642 198 LALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 198 ~~~k~y~~A~~~~~~ai~-~P~ 218 (437)
...++|.+|..+|+.++. .|.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 999999999999999998 564
No 36
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=93.96 E-value=4.7 Score=38.78 Aligned_cols=97 Identities=10% Similarity=0.034 Sum_probs=74.1
Q ss_pred hhhCCCCcchHHHHHHHHHhCCCCc---chhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHH
Q psy9642 117 MDLKTPQRGIPLIQTAIKKIQTSDS---QLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYG 193 (437)
Q Consensus 117 ~~~~~~~~~i~~l~~ai~rl~~~~~---~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~ 193 (437)
...+.+..++..+..|+.-+...+. .....+..+..++...++|..|++...+-+...... -+.......++.-
T Consensus 152 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l 228 (378)
T 3q15_A 152 YHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI---QNDRFIAISLLNI 228 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Confidence 3466677888889998887654432 345677788899999999999999988765532221 1234566777889
Q ss_pred HHHHHHHhhHHHHHHHHHHHhcc
Q psy9642 194 GMIYLALKNYERALYFFEVIITT 216 (437)
Q Consensus 194 G~I~~~~k~y~~A~~~~~~ai~~ 216 (437)
|.++..+++|++|..+|..++..
T Consensus 229 g~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 229 ANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999983
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=93.95 E-value=1.4 Score=42.42 Aligned_cols=114 Identities=14% Similarity=0.069 Sum_probs=79.5
Q ss_pred hhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 117 MDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 117 ~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
...+..-.++..+..++..-..++......+..+..++...++|..|+..+.+-+...... -+.......++.-|.+
T Consensus 59 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM---NDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---cCchHHHHHHHHHHHH
Confidence 3345556677788888776333334445678888999999999999999988866532221 1345677888899999
Q ss_pred HHHHhhHHHHHHHHHHHhcc-cccccCHHHHHHHHHHH
Q psy9642 197 YLALKNYERALYFFEVIITT-PALAVSHIMLEGYKKYL 233 (437)
Q Consensus 197 ~~~~k~y~~A~~~~~~ai~~-P~~~~s~i~vea~Kk~i 233 (437)
+...++|.+|..+|..++.. +..........++..+.
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 99999999999999999984 43332233444444333
No 38
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=93.72 E-value=0.19 Score=39.25 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.+..+..+++..++|..|+..+++-+.. . + +....++.-|.++...++|.+|..+|+.++. .|..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-------p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVET-D-------P-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-------T-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-------C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 5677888999999999999999887653 1 1 1344778899999999999999999999998 4543
No 39
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=93.69 E-value=0.39 Score=36.94 Aligned_cols=77 Identities=13% Similarity=0.058 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-ccccccCHH
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPALAVSHI 224 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~~~s~i 224 (437)
.+..+...+...++|..|+...++-+.. . + .....++..|.++..+++|.+|..+|..++. .|.......
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~-------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA-Q-------P-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-------C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 3556677888999999999998887653 1 1 1346678899999999999999999999999 676533333
Q ss_pred HHHHHHH
Q psy9642 225 MLEGYKK 231 (437)
Q Consensus 225 ~vea~Kk 231 (437)
..+++-.
T Consensus 77 ~~~~~~~ 83 (111)
T 2l6j_A 77 RSKLQYR 83 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 40
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=93.69 E-value=0.28 Score=45.90 Aligned_cols=96 Identities=8% Similarity=0.036 Sum_probs=72.4
Q ss_pred HHhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHH
Q psy9642 115 TVMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGG 194 (437)
Q Consensus 115 ~~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G 194 (437)
.....+..-.++..+..++...+.++......+..+..++...+++..|+..+++-+.. . + +....++..|
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-------~-~~~~~~~~~~ 313 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-E-------P-DNVNALKDRA 313 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C-------c-ccHHHHHHHH
Confidence 34446666778888888877654334434455777889999999999999998886653 1 1 2345778889
Q ss_pred HHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 195 MIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 195 ~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.++...++|.+|..+|+.++. .|..
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999998 6764
No 41
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=93.67 E-value=0.7 Score=39.22 Aligned_cols=89 Identities=9% Similarity=0.097 Sum_probs=66.0
Q ss_pred hhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHH-HHHhCCc--hHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHH
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQL-CLLAQNF--KPALEFLDVDITTIANEGPQFDTKYFLQYFYYGG 194 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l-~L~~~~y--~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G 194 (437)
..+....++..+..++..- |.. ...+..+..+ +...+.+ ..|+..+.+-+.. . + .....++..|
T Consensus 56 ~~~~~~~A~~~~~~al~~~-p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~-~-------p-~~~~~~~~la 122 (177)
T 2e2e_A 56 WQNDYSNSLLAYRQALQLR-GEN---AELYAALATVLYYQASQHMTAQTRAMIDKALAL-D-------S-NEITALMLLA 122 (177)
T ss_dssp HTTCHHHHHHHHHHHHHHH-CSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH-C-------T-TCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC-CCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-C-------C-CcHHHHHHHH
Confidence 3455566788888877654 432 3356667777 7788998 9999988886653 1 1 1345677889
Q ss_pred HHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 195 MIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 195 ~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.++...++|.+|..+|..++. .|..
T Consensus 123 ~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 123 SDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999998 6765
No 42
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=93.60 E-value=0.29 Score=38.75 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=64.2
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. +|.. ...+..+..++...+++..|+..+++-+.. . + .....++..|.++.
T Consensus 29 ~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~-------~-~~~~~~~~la~~~~ 95 (133)
T 2lni_A 29 KGDYPQAMKHYTEAIKR-NPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQL-E-------P-TFIKGYTRKAAALE 95 (133)
T ss_dssp TTCSHHHHHHHHHHHTT-CTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-C-------C-CchHHHHHHHHHHH
Confidence 44555566666666543 3322 346777888888999999999998886653 1 1 14556788899999
Q ss_pred HHhhHHHHHHHHHHHhc-cccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..++|.+|..+|..++. .|..
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhhHHHHHHHHHHHHHhCCCc
Confidence 99999999999999998 6654
No 43
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=93.57 E-value=1.7 Score=41.02 Aligned_cols=154 Identities=10% Similarity=0.085 Sum_probs=93.1
Q ss_pred hhhCCCCcchHHHHHHHHHhCCCCc--chhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHH
Q psy9642 117 MDLKTPQRGIPLIQTAIKKIQTSDS--QLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGG 194 (437)
Q Consensus 117 ~~~~~~~~~i~~l~~ai~rl~~~~~--~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G 194 (437)
...+.+-.++..+..|+.-....+. .....+..+..++.. ++|..|+....+-+.-..... ........++--|
T Consensus 87 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~---~~~~~~~~~~~lg 162 (307)
T 2ifu_A 87 KDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE---RLRQAAELIGKAS 162 (307)
T ss_dssp HHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC---ChhHHHHHHHHHH
Confidence 3456777899999999877643322 233455666677766 999999999887665332211 2233456677889
Q ss_pred HHHHHHhhHHHHHHHHHHHhc-ccccccCHHHHHHHHHHHHHHHHHhCCCCC----------CCccccHHHhHhhccCCH
Q psy9642 195 MIYLALKNYERALYFFEVIIT-TPALAVSHIMLEGYKKYLLIYLIVYGKAPN----------LPKNVSQAICRYIKPLSQ 263 (437)
Q Consensus 195 ~I~~~~k~y~~A~~~~~~ai~-~P~~~~s~i~vea~Kk~iLv~Lil~G~~~~----------lp~~~s~~~~r~~k~~~~ 263 (437)
.++..+++|.+|..+|+.++. .|..........++-...++.+ ..|+... .|.+... ....
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~p~~~~~-------~e~~ 234 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL-HRADYVAAQKCVRESYSIPGFSGS-------EDCA 234 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSTTSTTS-------HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHhCCCCCCCC-------HHHH
Confidence 999999999999999999998 4543322222233333333222 2233211 1111100 0122
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q psy9642 264 PYLDLVSVYTNNNSTELQH 282 (437)
Q Consensus 264 pY~~L~~af~~~d~~~~~~ 282 (437)
....++.++..||...|..
T Consensus 235 ~l~~l~~~~~~~d~~~~~~ 253 (307)
T 2ifu_A 235 ALEDLLQAYDEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHH
Confidence 3556777888888877777
No 44
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=93.54 E-value=4.1 Score=36.91 Aligned_cols=100 Identities=12% Similarity=0.137 Sum_probs=73.4
Q ss_pred HHhhhCCCCcchHHHHHHHHHhC----CCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHH
Q psy9642 115 TVMDLKTPQRGIPLIQTAIKKIQ----TSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYF 190 (437)
Q Consensus 115 ~~~~~~~~~~~i~~l~~ai~rl~----~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~ 190 (437)
.....+..-.++..+..++.... +.+......+..+..++...+++..|+..+.+-+...... ..-+.......+
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~ 198 (311)
T 3nf1_A 120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK-LGPDDPNVAKTK 198 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-SCTTCHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH
Confidence 33445666677888888876641 3334455577888999999999999999998876543221 111234567778
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhc
Q psy9642 191 YYGGMIYLALKNYERALYFFEVIIT 215 (437)
Q Consensus 191 Yy~G~I~~~~k~y~~A~~~~~~ai~ 215 (437)
+.-|.++...++|++|..+|..++.
T Consensus 199 ~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 199 NNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8899999999999999999999997
No 45
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=93.46 E-value=0.42 Score=38.38 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=64.5
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. +|.. ...+..+..++...++|..|+..+.+-+.. . + +....++..|.++.
T Consensus 22 ~~~~~~A~~~~~~al~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~-------p-~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 22 GRKYPEAAACYGRAITR-NPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL-D-------G-QSVKAHFFLGQCQL 88 (137)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHhh-CcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-------c-hhHHHHHHHHHHHH
Confidence 34445566666666554 3432 347788888999999999999888876552 1 1 24567788999999
Q ss_pred HHhhHHHHHHHHHHHhc-ccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~ 218 (437)
..++|.+|..+|..++. .|.
T Consensus 89 ~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999998 565
No 46
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.39 E-value=0.31 Score=38.46 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHH
Q psy9642 126 IPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYER 205 (437)
Q Consensus 126 i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~ 205 (437)
+..+..++. .+|.. ...+..+..++...++|..|+..+.+-+.. ++ +....++.-|.++...++|.+
T Consensus 5 ~~~~~~al~-~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p-~~~~~~~~la~~~~~~g~~~~ 71 (115)
T 2kat_A 5 TERLEAMLA-QGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DP-TYSVAWKWLGKTLQGQGDRAG 71 (115)
T ss_dssp HHHHHHHHT-TTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHH-hCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CC-CcHHHHHHHHHHHHHcCCHHH
Confidence 344455443 34432 346778889999999999999998887653 11 235567888999999999999
Q ss_pred HHHHHHHHhc-cccc
Q psy9642 206 ALYFFEVIIT-TPAL 219 (437)
Q Consensus 206 A~~~~~~ai~-~P~~ 219 (437)
|..+|+.++. .|..
T Consensus 72 A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 72 ARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc
Confidence 9999999998 5654
No 47
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=93.38 E-value=0.19 Score=42.45 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 143 LTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 143 lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
-...+..+.+++...++|..|+..+.+-+.- ++ +....++.-|.++...++|++|..+|+.++. .|..
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 98 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QE-RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ 98 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC
Confidence 3446778899999999999999999887653 12 2566788999999999999999999999999 7765
No 48
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=93.36 E-value=1 Score=40.27 Aligned_cols=102 Identities=11% Similarity=0.070 Sum_probs=72.7
Q ss_pred HHhhhCCCCcchHHHHHHHHHh----CCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcC-------------
Q psy9642 115 TVMDLKTPQRGIPLIQTAIKKI----QTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANE------------- 177 (437)
Q Consensus 115 ~~~~~~~~~~~i~~l~~ai~rl----~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~------------- 177 (437)
.....+..-.++..+..++... .+........+..+..++...+++..|+..+.+-+......
T Consensus 136 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 215 (283)
T 3edt_B 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIW 215 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 3344566667788888887663 23234455678888999999999999999987765431100
Q ss_pred ---------------------------CCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q psy9642 178 ---------------------------GPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITT 216 (437)
Q Consensus 178 ---------------------------~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~~ 216 (437)
............++.-|.++...++|.+|..+|+.++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 216 MHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 000133557778888999999999999999999999874
No 49
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=93.21 E-value=1.9 Score=38.40 Aligned_cols=134 Identities=12% Similarity=0.061 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHh----CCCCcchhhHHHHHHHH
Q psy9642 78 YQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKI----QTSDSQLTSLHSDLCQL 153 (437)
Q Consensus 78 ~~~~~~~~~~~fl~~fd~~Qir~a~~~~~~l~~~~~~~~~~~~~~~~~i~~l~~ai~rl----~~~~~~lT~~h~~l~~l 153 (437)
+....+.++........+..-...+..+..++ ......+..-.++..+..++... .+........+..+..+
T Consensus 61 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 136 (283)
T 3edt_B 61 EAAHLLNDALAIREKTLGKDHPAVAATLNNLA----VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALL 136 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH----HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH----HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 34456666665554321000011223343333 33344566667788888887764 23233445577888899
Q ss_pred HHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q psy9642 154 CLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITT 216 (437)
Q Consensus 154 ~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~~ 216 (437)
+...++|..|+..+.+-+....... .-+.......++.-|.++...++|.+|..+|..++..
T Consensus 137 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 137 CQNQGKAEEVEYYYRRALEIYATRL-GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999888665422211 1123446777788899999999999999999999983
No 50
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.09 E-value=0.39 Score=36.57 Aligned_cols=62 Identities=19% Similarity=0.268 Sum_probs=49.8
Q ss_pred HHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHH-HHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 149 DLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQ-YFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 149 ~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~-Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
......+..++|..|+..+++-+.. .+. ... .++..|.++...++|.+|..+|+.++. .|..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~--------~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT--------EPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--------CSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--------CCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 4566788999999999998886653 122 234 778889999999999999999999998 6765
No 51
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=93.06 E-value=2.8 Score=38.95 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=70.8
Q ss_pred hCCCCcchHHHHHHHHHhC---CCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQ---TSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGM 195 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~---~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~ 195 (437)
.+..-.++..+..|+..+. ........++..+..++...++|..|+..+++-+.-..... +.......++.-|.
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~---~~~~~~~~~~~lg~ 244 (293)
T 3u3w_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN---SMALIGQLYYQRGE 244 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---BCTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC---cHHHHHHHHHHHHH
Confidence 4555667888888886543 23344555788889999999999999999988664322211 12235778889999
Q ss_pred HHHHHh-hHHHHHHHHHHHhccc
Q psy9642 196 IYLALK-NYERALYFFEVIITTP 217 (437)
Q Consensus 196 I~~~~k-~y~~A~~~~~~ai~~P 217 (437)
++..++ +|++|.++|..|+..-
T Consensus 245 ~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 245 CLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHHHHH
Confidence 999999 6899999999999843
No 52
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=93.05 E-value=3.8 Score=39.46 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=71.9
Q ss_pred hCCCCcchHHHHHHHHHhCCC--CcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTS--DSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~--~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
.+....++..+..|+..+... +......+..+..++...+++..|+....+-+...... .. .......-++.-|.+
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-~~-~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-PL-YSIRTIQSLFVIAGN 191 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-TT-CHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC-CC-chhhHHHHHHHHHHH
Confidence 456667888888887665432 33455678888999999999999999988866543221 11 123466777889999
Q ss_pred HHHHhhHHHHHHHHHHHhcc
Q psy9642 197 YLALKNYERALYFFEVIITT 216 (437)
Q Consensus 197 ~~~~k~y~~A~~~~~~ai~~ 216 (437)
+...++|++|..+|..++..
T Consensus 192 y~~~~~~~~A~~~~~~al~~ 211 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALEL 211 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999999983
No 53
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.02 E-value=2.4 Score=41.22 Aligned_cols=97 Identities=13% Similarity=0.163 Sum_probs=71.4
Q ss_pred CCCCcchHHHHHHHHHhCCCC--cchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHH
Q psy9642 120 KTPQRGIPLIQTAIKKIQTSD--SQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIY 197 (437)
Q Consensus 120 ~~~~~~i~~l~~ai~rl~~~~--~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~ 197 (437)
+..-.++.....++....... .....++..+.++....|+|..|++++..-...... .-+....+.++...|.+|
T Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 185 (434)
T 4b4t_Q 109 DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK---LDDKPSLVDVHLLESKVY 185 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT---SSCSTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh---cccchhHHHHHHHHHHHH
Confidence 334456666666665543222 223557888999999999999999999876554322 123456889999999999
Q ss_pred HHHhhHHHHHHHHHHHhc-cccc
Q psy9642 198 LALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 198 ~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
...+||.+|..+|..+.+ .|..
T Consensus 186 ~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 186 HKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHhCcHHHHHHHHHHHHHHhhcC
Confidence 999999999999999988 4444
No 54
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.78 E-value=0.46 Score=45.47 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccccccccchh-hHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHH
Q psy9642 265 YLDLVSVYTNNNSTELQHLLLKYADVFSRDENT-GLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYI 343 (437)
Q Consensus 265 Y~~L~~af~~~d~~~~~~~~~~~~~~f~~D~n~-~Lv~~l~~~v~r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l 343 (437)
-.++-+++..|+..+|-+...+...- ..-+ -++..+..+++..-+..+.++|.+|+++++++.|+.++++|+..++
T Consensus 145 al~le~al~eGnY~kff~l~~~~~~p---~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~ 221 (274)
T 4b4t_T 145 PIKLDRWLMEGSYQKAWDLLQSGSQN---ISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFA 221 (274)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHTCTTC---CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHH
Confidence 35677777889887776665542210 0112 3788899999999999999999999999999999999999998888
Q ss_pred HHhHHcCceEEEEecCCCEEEEcc
Q psy9642 344 LKMISQNEIYATINKKDGMVVFND 367 (437)
Q Consensus 344 ~~mI~~G~I~A~Id~~~g~v~F~~ 367 (437)
.+ .|. ++ .+|.+.|..
T Consensus 222 ~~---~gW---~~--~~~~v~F~~ 237 (274)
T 4b4t_T 222 LE---RNW---PI--VNSKVYFNN 237 (274)
T ss_dssp HH---TTC---CC--CSSCCCC--
T ss_pred HH---cCC---EE--eCCEeEECC
Confidence 65 342 22 366777753
No 55
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=92.78 E-value=0.88 Score=35.03 Aligned_cols=88 Identities=14% Similarity=0.237 Sum_probs=63.6
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+....++..+..++... |.. ...+..+..++...+++..|+..+.+-+.. .+ .....++.-|.++.
T Consensus 22 ~~~~~~A~~~~~~~~~~~-~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~--------~~~~~~~~la~~~~ 88 (125)
T 1na0_A 22 QGDYDEAIEYYQKALELD-PNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DP--------NNAEAWYNLGNAYY 88 (125)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-cCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CC--------ccHHHHHHHHHHHH
Confidence 444555666777776543 322 235677888999999999999988876542 11 12345677899999
Q ss_pred HHhhHHHHHHHHHHHhc-cccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..++|.+|..+|..++. .|..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhcCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999998 6654
No 56
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=92.75 E-value=7.2 Score=37.37 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=70.1
Q ss_pred hhCCCCcchHHHHHHHHHhCCCCc---chhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHH
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSDS---QLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGG 194 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~~---~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G 194 (437)
..+.+..++..+..|+.-+...+. .....+..+..++...++|..|+..+.+-+...... -+.......++.-|
T Consensus 155 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg 231 (383)
T 3ulq_A 155 YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE---KQPQLMGRTLYNIG 231 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc---CChHHHHHHHHHHH
Confidence 356667788888888877654432 234567777888889999999988887765432221 13445666778889
Q ss_pred HHHHHHhhHHHHHHHHHHHhcc
Q psy9642 195 MIYLALKNYERALYFFEVIITT 216 (437)
Q Consensus 195 ~I~~~~k~y~~A~~~~~~ai~~ 216 (437)
.++..+++|.+|..+|..++..
T Consensus 232 ~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 232 LCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999983
No 57
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=92.73 E-value=0.66 Score=42.43 Aligned_cols=102 Identities=17% Similarity=0.122 Sum_probs=72.5
Q ss_pred HHHhhhCCCCcchHHHHHHHHHhCC----CCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcC------------
Q psy9642 114 KTVMDLKTPQRGIPLIQTAIKKIQT----SDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANE------------ 177 (437)
Q Consensus 114 ~~~~~~~~~~~~i~~l~~ai~rl~~----~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~------------ 177 (437)
......+..-.++..+..++..... ........+..+..++...+++..|+..+.+-+......
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 3444456667788888888776432 234455678888999999999999999887765421000
Q ss_pred ----------------------------CCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q psy9642 178 ----------------------------GPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT 215 (437)
Q Consensus 178 ----------------------------~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~ 215 (437)
...-........++.-|.++...++|++|..+|+.++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00002345677788899999999999999999999987
No 58
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=92.45 E-value=0.41 Score=35.38 Aligned_cols=66 Identities=14% Similarity=0.290 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 145 SLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 145 ~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..+..+...+...++|..|+....+-+.. . + +....++.-|.++...++|++|..+|+.++. .|..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~-------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-------P-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc-C-------C-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 35667788899999999999998887653 1 1 1345677889999999999999999999998 6754
No 59
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=92.41 E-value=1.1 Score=36.86 Aligned_cols=88 Identities=18% Similarity=0.213 Sum_probs=65.7
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. +|.. ...+..+..++...++|..|+..+.+-+.. . + .....++..|.++.
T Consensus 26 ~~~~~~A~~~~~~al~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~-------~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 26 AKDYENAIKFYSQAIEL-NPSN---AIYYGNRSLAYLRTECYGYALGDATRAIEL-D-------K-KYIKGYYRRAASNM 92 (166)
T ss_dssp TTCHHHHHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-------c-ccHHHHHHHHHHHH
Confidence 44455667777777654 3432 346777888899999999999998886653 1 1 13456778899999
Q ss_pred HHhhHHHHHHHHHHHhc-cccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..++|.+|..+|..++. .|..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhccHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998 6754
No 60
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=92.25 E-value=0.79 Score=46.45 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=70.4
Q ss_pred HhhhCCCCcchHHHHHHHHHhCCCC-----------cchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChH
Q psy9642 116 VMDLKTPQRGIPLIQTAIKKIQTSD-----------SQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTK 184 (437)
Q Consensus 116 ~~~~~~~~~~i~~l~~ai~rl~~~~-----------~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~ 184 (437)
+...+....++..+..|+......+ ......+..+..+++..++|..|+...++-+.. . +
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~-------p- 348 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-D-------S- 348 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-------T-
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-------C-
Confidence 3345556677888888876653221 122467888899999999999999998887653 1 1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 185 YFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 185 ~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
+....+|..|.++..+++|.+|..+|..++. .|..
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 2467789999999999999999999999999 6765
No 61
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=92.19 E-value=0.34 Score=47.94 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=68.2
Q ss_pred hCCCCcchHHHHHHHHHhCC------------CCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhh
Q psy9642 119 LKTPQRGIPLIQTAIKKIQT------------SDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYF 186 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~------------~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~ 186 (437)
.+..-.++..++.|+..+.. ........+..+..+++..++|..|+...++-+.. ++ +.
T Consensus 236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p-~~ 306 (370)
T 1ihg_A 236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--------DP-SN 306 (370)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CT-TC
T ss_pred hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------Cc-hh
Confidence 44555667777777663211 11233457788889999999999999988887652 12 35
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 187 LQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 187 l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
...+|..|.++..+++|++|..+|+.++. .|..
T Consensus 307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 67788999999999999999999999998 6764
No 62
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=92.01 E-value=3.3 Score=44.12 Aligned_cols=155 Identities=12% Similarity=0.060 Sum_probs=99.5
Q ss_pred hCCCCcchHHHHHHHH-------HhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIK-------KIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFY 191 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~-------rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Y 191 (437)
.+.+-.++..+..++. ..+|.. ...+..+.++++..++|..|+..+++-+.. . .+....+|
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~--------p~~~~a~~ 471 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSES---VELPLMEVRALLDLGDVAKATRKLDDLAER-V--------GWRWRLVW 471 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-H--------CCCHHHHH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccc---hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-C--------cchHHHHH
Confidence 4555566777777761 233332 236778889999999999999999887653 1 12466788
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhc-ccccccCHHHHHHHHHHHHHHHHHhCCCCCCCccccHHHhHhhccCCHHHHHHHH
Q psy9642 192 YGGMIYLALKNYERALYFFEVIIT-TPALAVSHIMLEGYKKYLLIYLIVYGKAPNLPKNVSQAICRYIKPLSQPYLDLVS 270 (437)
Q Consensus 192 y~G~I~~~~k~y~~A~~~~~~ai~-~P~~~~s~i~vea~Kk~iLv~Lil~G~~~~lp~~~s~~~~r~~k~~~~pY~~L~~ 270 (437)
+.|.++..+++|++|..+|+.++. .|... +++..+-. .+...|+... -..-... .+.-......|..++.
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~lg~-~~~~~g~~~~-~~~~~~a-l~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 472 YRAVAELLTGDYDSATKHFTEVLDTFPGEL------APKLALAA-TAELAGNTDE-HKFYQTV-WSTNDGVISAAFGLAR 542 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCS------HHHHHHHH-HHHHHTCCCT-TCHHHHH-HHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHH-HHHHcCChHH-HHHHHHH-HHhCCchHHHHHHHHH
Confidence 999999999999999999999998 78653 22222222 2335777766 3321111 1111234577888998
Q ss_pred HHh-cCCHHHHHHHHHhccccccccchh
Q psy9642 271 VYT-NNNSTELQHLLLKYADVFSRDENT 297 (437)
Q Consensus 271 af~-~~d~~~~~~~~~~~~~~f~~D~n~ 297 (437)
++. .|+. .+.++.++....-+.++
T Consensus 543 ~~~~~g~~---~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 543 ARSAEGDR---VGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HHHHTTCH---HHHHHHHHTSCTTSTTH
T ss_pred HHHHcCCH---HHHHHHHHhhcccCccc
Confidence 885 4554 45555555555555543
No 63
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=92.01 E-value=0.88 Score=43.95 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=72.0
Q ss_pred HhhhCCCCcchHHHHHHHHHhCCCCc------------chhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCCh
Q psy9642 116 VMDLKTPQRGIPLIQTAIKKIQTSDS------------QLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDT 183 (437)
Q Consensus 116 ~~~~~~~~~~i~~l~~ai~rl~~~~~------------~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~ 183 (437)
+...+..-.++..+..|+... |... .....+..+..+++..++|..|+...++-+.. . +
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~-------p 227 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-D-------S 227 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T
T ss_pred HHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-------C
Confidence 334556667788888887664 3321 12457888899999999999999998887653 1 1
Q ss_pred HhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 184 KYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 184 ~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
+....+|..|.++..+++|.+|..+|..++. .|..
T Consensus 228 -~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 228 -NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred -CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 2456778999999999999999999999999 7765
No 64
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=91.98 E-value=0.49 Score=35.96 Aligned_cols=89 Identities=9% Similarity=-0.005 Sum_probs=61.3
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. +|.. ...+..+..++...++|..|+..+.+-+.. .+. ......++..|.++.
T Consensus 19 ~~~~~~A~~~~~~a~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~------~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 19 AGNYTESIDLFEKAIQL-DPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINV-IED------EYNKDVWAAKADALR 87 (112)
T ss_dssp SCCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SCC------TTCHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHh-CcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-Ccc------cchHHHHHHHHHHHH
Confidence 34444556666666554 3332 235667788888999999998888876542 110 113456778899999
Q ss_pred HH-hhHHHHHHHHHHHhc-ccc
Q psy9642 199 AL-KNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 199 ~~-k~y~~A~~~~~~ai~-~P~ 218 (437)
.. ++|++|.++|..++. .|.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHhCCHHHHHHHHHHHhhcccC
Confidence 99 999999999999998 554
No 65
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=91.95 E-value=0.38 Score=43.50 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=68.2
Q ss_pred hhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHH
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIY 197 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~ 197 (437)
..+..-.++..+..++. ..+++......+..+..++...+++..|+..+.+-+.. .+ .....++.-|.++
T Consensus 49 ~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~--------~~~~~~~~l~~~~ 118 (272)
T 3u4t_A 49 ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-DT--------TRLDMYGQIGSYF 118 (272)
T ss_dssp HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST--------TCTHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-Cc--------ccHHHHHHHHHHH
Confidence 34555667788888877 44555555667888889999999999998888876652 11 1234567888999
Q ss_pred HHHhhHHHHHHHHHHHhc-cccc
Q psy9642 198 LALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 198 ~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
...++|.+|..+|..++. .|..
T Consensus 119 ~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHccCHHHHHHHHHHHhhcCCCc
Confidence 999999999999999998 4543
No 66
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=91.68 E-value=0.52 Score=43.78 Aligned_cols=91 Identities=11% Similarity=0.011 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHhcCCHHHHHHHHHhccccccccchhhHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHhCCCChHHHHH
Q psy9642 262 SQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEI 341 (437)
Q Consensus 262 ~~pY~~L~~af~~~d~~~~~~~~~~~~~~f~~D~n~~Lv~~l~~~v~r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~ 341 (437)
+..-..|.+...+|+..+|-+.+.... .....|..+..++++.-...+.++|.+|+++++++.||..++++++.
T Consensus 99 I~~i~~L~~~L~~~~y~~fW~~l~~~~------~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~ 172 (226)
T 1rz4_A 99 IRQILYLGDLLETCHFQAFWQALDENM------DLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKV 172 (226)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCTTC------HHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCh------hHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHH
Confidence 444467777888888776655544321 12233444667788888899999999999999999997445789988
Q ss_pred HHHHhHHcCceEEEEecCCCEEEE
Q psy9642 342 YILKMISQNEIYATINKKDGMVVF 365 (437)
Q Consensus 342 ~l~~mI~~G~I~A~Id~~~g~v~F 365 (437)
.+.+- |- ++| ++|.|.|
T Consensus 173 fi~~~---GW---~vd-~~g~I~~ 189 (226)
T 1rz4_A 173 WMSKY---GW---SAD-ESGQIFI 189 (226)
T ss_dssp HHHHH---TC---EEC-C--CEEC
T ss_pred HHHHC---CC---EEC-CCccEEe
Confidence 88762 54 234 4566755
No 67
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=91.62 E-value=0.67 Score=37.81 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.|-.+...+...++|..|+...++-|.- + | +...+++..|.++..+++|.+|..+|..++. .|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~-~-------p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL-D-------P-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-------C-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 4667788899999999999999887652 2 2 2456778899999999999999999999998 5654
No 68
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=91.55 E-value=4.2 Score=35.93 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=67.0
Q ss_pred hhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 117 MDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 117 ~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
...+..-.++..+..++.. +|.. ...+..+..++...+++..|+..+.+-+. . .. .......++..|.+
T Consensus 82 ~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~----~~-~~~~~~~~~~la~~ 150 (252)
T 2ho1_A 82 QTEMEPKLADEEYRKALAS-DSRN---ARVLNNYGGFLYEQKRYEEAYQRLLEASQ--D----TL-YPERSRVFENLGLV 150 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTT--C----TT-CTTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH-CcCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHh--C----cc-CcccHHHHHHHHHH
Confidence 3355666777888887755 3332 34677788899999999999998887654 0 01 12245666778999
Q ss_pred HHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 197 YLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 197 ~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
+...++|++|..+|..++. .|..
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~ 174 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHcCCHHHHHHHHHHHHhcCccc
Confidence 9999999999999999998 5543
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=91.50 E-value=0.91 Score=39.22 Aligned_cols=91 Identities=11% Similarity=0.094 Sum_probs=65.3
Q ss_pred Hhhh-CCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHH
Q psy9642 116 VMDL-KTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGG 194 (437)
Q Consensus 116 ~~~~-~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G 194 (437)
.... +..-.++..+..++. .|........+..+..++...+++..|+..+.+-+.. . + .....++.-|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-------~-~~~~~~~~la 154 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-Q-------P-QFPPAFKELA 154 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-------T-TCHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-------C-CCchHHHHHH
Confidence 3445 566677777777776 3333344557778888889999999998888776542 1 1 1245567788
Q ss_pred HHHHHHhhHHHHHHHHHHHhc-cc
Q psy9642 195 MIYLALKNYERALYFFEVIIT-TP 217 (437)
Q Consensus 195 ~I~~~~k~y~~A~~~~~~ai~-~P 217 (437)
.++...++|.+|..+|..++. .|
T Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Confidence 889999999999999999888 56
No 70
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=91.47 E-value=0.76 Score=40.71 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=52.7
Q ss_pred hhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHH
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIY 197 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~ 197 (437)
..+..-.++..+..++..- |.. ...+..+..++...++|..|+..+++-+.. . + +....++..|.++
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~-------~-~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PED---ARGYSNRAAALAKLMSFPEAIADCNKAIEK-D-------P-NFVRAYIRKATAQ 217 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-ccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-C-------H-HHHHHHHHHHHHH
Confidence 3445555666666665543 321 245666677777777777777777665442 1 1 1344556677777
Q ss_pred HHHhhHHHHHHHHHHHhc
Q psy9642 198 LALKNYERALYFFEVIIT 215 (437)
Q Consensus 198 ~~~k~y~~A~~~~~~ai~ 215 (437)
...++|.+|..+|..++.
T Consensus 218 ~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 218 IAVKEYASALETLDAART 235 (258)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777777776
No 71
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=91.43 E-value=2.3 Score=39.54 Aligned_cols=99 Identities=9% Similarity=0.106 Sum_probs=73.0
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcch--hhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQL--TSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~l--T~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
.+..-.++..+..|+....+.+... ..++..+..++...++|..|+....+-+...... .-........+|.-|.+
T Consensus 128 ~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~nlg~~ 205 (293)
T 3u3w_A 128 KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp SSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHH
Confidence 4455678888999887433333322 3356777888899999999999998876533221 11456678888999999
Q ss_pred HHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 197 YLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 197 ~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
|..+++|++|..+|..++. .+..
T Consensus 206 y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 206 LYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998 4443
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=91.28 E-value=1.2 Score=39.48 Aligned_cols=89 Identities=15% Similarity=0.130 Sum_probs=65.5
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++..-++... ..+..+..++...++|..|+..+.+-+.. ++ +....++.-|.++.
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p-~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDS---VTAYNCGVCADNIKKYKEAADYFDIAIKK--------NY-NLANAYIGKSAAYR 87 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TC-SHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------Cc-chHHHHHHHHHHHH
Confidence 34445567777777654321221 34555888999999999999998887642 12 25667788999999
Q ss_pred HHhhHHHHHHHHHHHhc-cccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.+++|.+|..+|..++. .|..
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~~ 109 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPGN 109 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC
T ss_pred HcccHHHHHHHHHHHHHHCCCc
Confidence 99999999999999998 6764
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=91.23 E-value=11 Score=36.12 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=75.2
Q ss_pred hhCCCCcchHHHHHHHHHhCCC--CcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHH
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTS--DSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGM 195 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~--~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~ 195 (437)
..+..-.++..+..|+..+... +......+..+..++...+++..|+....+-+.-.... .. .......-++.-|.
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~-~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EA-YNIRLLQCHSLFAT 192 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-ST-THHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-cc-chHHHHHHHHHHHH
Confidence 3566677888888888765433 33355678888999999999999999988866543321 11 13456777888999
Q ss_pred HHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 196 IYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 196 I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
++..+++|++|..+|..++. .|..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~ 217 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAE 217 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999998 4544
No 74
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=91.12 E-value=0.5 Score=38.30 Aligned_cols=65 Identities=9% Similarity=-0.095 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.+..+...++..+++..|+..+.+-+.. .+ +....+|..|.++...++|.+|..+|+.++. .|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4567788899999999999999887653 12 2466778999999999999999999999999 6764
No 75
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=91.07 E-value=2.9 Score=35.58 Aligned_cols=96 Identities=13% Similarity=0.011 Sum_probs=69.9
Q ss_pred hCCCCcchHHHHHHHHHhCCC--CcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTS--DSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~--~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
.+..-.++..+..++...... +......+..+..++...++|..|+..+.+-+......+ -++......++.-|.+
T Consensus 39 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~lg~~ 116 (203)
T 3gw4_A 39 MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP--EDPLAASANAYEVATV 116 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ccHHHHHHHHHHHHHH
Confidence 455556777777777655433 233455677788999999999999999888665432211 1233566777889999
Q ss_pred HHHHhhHHHHHHHHHHHhcc
Q psy9642 197 YLALKNYERALYFFEVIITT 216 (437)
Q Consensus 197 ~~~~k~y~~A~~~~~~ai~~ 216 (437)
+...++|++|..+|..++..
T Consensus 117 ~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 117 ALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999999974
No 76
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=90.89 E-value=0.6 Score=37.25 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.+......++..++|..|+....+-+.. . + +....++..|.++..+++|.+|..+|..++. .|..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~-------p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR-A-------P-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-------C-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4556778889999999999999887653 1 1 1356788899999999999999999999998 6654
No 77
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=90.76 E-value=0.85 Score=38.78 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=63.3
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+....++..+..++.. +|.. ...+..+..+....++|..|+..+.+-+.. . + +....++.-|.++.
T Consensus 86 ~~~~~~a~~~~~~a~~~-~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~-------p-~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIAL-NTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISI-K-------P-GFIRAYQSIGLAYE 152 (184)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh-Cccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHh-c-------c-hhhhHHHHHHHHHH
Confidence 34444556666666544 4432 235667788999999999999998876542 1 1 24556788899999
Q ss_pred HHhhHHHHHHHHHHHhc-ccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~ 218 (437)
.+++|++|.++|+.|+. .|.
T Consensus 153 ~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HTTCHHHHHHHHHHHHHTTHH
T ss_pred HCCCHHHHHHHHHHHHhCCcc
Confidence 99999999999999998 564
No 78
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=90.71 E-value=0.93 Score=41.81 Aligned_cols=100 Identities=13% Similarity=0.154 Sum_probs=68.3
Q ss_pred HhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHH
Q psy9642 116 VMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGM 195 (437)
Q Consensus 116 ~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~ 195 (437)
....+.+-.++..+..++.. +|.. ...+..+..++...++|..|+..+.+-+..................++.-|.
T Consensus 169 ~~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSI-APED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTT-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 33455666677777777544 3332 3467778888899999999988888766544332222222334566677888
Q ss_pred HHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 196 IYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 196 I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
++...++|++|..+|+.++. .|..
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~~ 269 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQN 269 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccc
Confidence 88888999999999998887 5653
No 79
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=90.68 E-value=0.66 Score=37.89 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=55.5
Q ss_pred hhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 143 LTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 143 lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
+.-.|......++..|+|..|+...++-|.. ++ .....++..|.++..+++|.+|..+|..++. .|..
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence 3446778889999999999999998887652 12 2456778899999999999999999999998 5654
No 80
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=90.58 E-value=0.6 Score=39.97 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.+..+...+...+.|..|+....+-+.. +| ....+++.-|.++...++|++|..+|+.++. .|..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 4667778889999999999999887653 12 2566888899999999999999999999999 7765
No 81
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=90.56 E-value=0.66 Score=38.22 Aligned_cols=65 Identities=20% Similarity=0.078 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.+..+...++..++|..|+..+.+-+.. ++ ....+++.-|.++...++|.+|..+|..++. .|..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--------DH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--------CC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 4556778889999999999998876652 12 2456778899999999999999999999998 6764
No 82
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=90.54 E-value=0.76 Score=36.14 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=55.0
Q ss_pred cchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-ccc
Q psy9642 141 SQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 141 ~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~ 218 (437)
..-...+..+...+...++|..|+..+++-+.. .+ .....++..|.++...++|.+|..+|+.++. .|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 344456778889999999999999998886642 11 1356678889999999999999999999998 564
No 83
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=90.47 E-value=2 Score=33.32 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.+..+...+...++|..|+..+.+-+.. . + .....++..|.++...++|.+|..+|..++. .|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-------~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL-D-------P-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-------C-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 4566778899999999999998886653 1 1 1346677889999999999999999999998 5543
No 84
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=90.45 E-value=7.8 Score=34.10 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=66.7
Q ss_pred HhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHH
Q psy9642 116 VMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGM 195 (437)
Q Consensus 116 ~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~ 195 (437)
....+..-.++..+..++.. +|.. ...+..+..++...+++..|+..+.+-+.. . + .....++..|.
T Consensus 47 ~~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~-------~-~~~~~~~~la~ 113 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEI-DPSS---ADAHAALAVVFQTEMEPKLADEEYRKALAS-D-------S-RNARVLNNYGG 113 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc-CCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-C-------c-CcHHHHHHHHH
Confidence 33456677888888888765 3332 346778889999999999999998886643 1 1 13455677899
Q ss_pred HHHHHhhHHHHHHHHHHHhc
Q psy9642 196 IYLALKNYERALYFFEVIIT 215 (437)
Q Consensus 196 I~~~~k~y~~A~~~~~~ai~ 215 (437)
++...++|.+|..+|..++.
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHHHh
Confidence 99999999999999999998
No 85
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=90.34 E-value=0.69 Score=38.88 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.+..+....+..++|..|+..+.+-+.. ++ ....+++.-|.++...++|++|..+|..++. .|..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL--------DH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--------Cc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 5667788999999999999998876642 12 2456678899999999999999999999998 6764
No 86
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=90.29 E-value=0.94 Score=41.76 Aligned_cols=90 Identities=17% Similarity=0.016 Sum_probs=59.7
Q ss_pred HhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHH
Q psy9642 116 VMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGM 195 (437)
Q Consensus 116 ~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~ 195 (437)
....+..-.++..+..++...+... ..+..+..++...+++..|+..+.+-+.. .+. ...........++..|.
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~-~~~~~~~l~~~~~~~~~ 208 (330)
T 3hym_B 135 FAVESEHDQAMAAYFTAAQLMKGCH----LPMLYIGLEYGLTNNSKLAERFFSQALSI-APE-DPFVMHEVGVVAFQNGE 208 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCS----HHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHccCHHHHHHHHHHHHHhccccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHh-CCC-ChHHHHHHHHHHHHccc
Confidence 3345666778888888876643322 23555889999999999999998876543 211 11112235566667788
Q ss_pred HHHHHhhHHHHHHHHH
Q psy9642 196 IYLALKNYERALYFFE 211 (437)
Q Consensus 196 I~~~~k~y~~A~~~~~ 211 (437)
.--+..-|.+|.....
T Consensus 209 ~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 209 WKTAEKWFLDALEKIK 224 (330)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888888888877653
No 87
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=90.22 E-value=0.67 Score=39.03 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 145 SLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 145 ~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..+..+...++..++|..|+..+.+-+.. . + +...+++..|.++...++|.+|..+|..++. .|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~-------p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI-A-------P-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-------C-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 35677888999999999999999887653 1 1 2456788899999999999999999999998 6654
No 88
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=90.21 E-value=0.63 Score=36.86 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 147 HSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 147 h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
+..+...++..++|..|+..+.+-+... + +.......+|..|.++...++|.+|..+|..++. .|..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p-----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-P-----NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-S-----SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-C-----CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 4456778889999999999888765431 1 1112336678899999999999999999999998 6654
No 89
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=90.17 E-value=1.2 Score=36.91 Aligned_cols=89 Identities=11% Similarity=0.054 Sum_probs=63.4
Q ss_pred hhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHH
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIY 197 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~ 197 (437)
..+.+-.++..+..++... |.. ...+..+..++...+++..|+..+.+-+.. . + .....++..|.++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-------~-~~~~~~~~la~~~ 154 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGL-R-------P-NEGKVHRAIAFSY 154 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-C-------c-cchHHHHHHHHHH
Confidence 3455556777777776553 322 346677888889999999998888776543 1 1 1245667888899
Q ss_pred HHHhhHHHHHHHHHHHhc-cccc
Q psy9642 198 LALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 198 ~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
...++|.+|..+|..++. .|..
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 155 EQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHcCCHHHHHHHHHHHHHcCCCc
Confidence 999999999999999987 5554
No 90
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=90.04 E-value=3.9 Score=37.89 Aligned_cols=96 Identities=9% Similarity=0.086 Sum_probs=68.0
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcc--hhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQ--LTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~--lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
.+..-.++..+..|+......... ....+..+..++...++|..|+....+-+....... -+.......++.-|.+
T Consensus 128 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~ 205 (293)
T 2qfc_A 128 KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKA 205 (293)
T ss_dssp SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHH
Confidence 445567788888887554332222 234677788899999999999999988664322211 1222234678899999
Q ss_pred HHHHhhHHHHHHHHHHHhcc
Q psy9642 197 YLALKNYERALYFFEVIITT 216 (437)
Q Consensus 197 ~~~~k~y~~A~~~~~~ai~~ 216 (437)
|..+++|++|..+|..++..
T Consensus 206 y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 206 LYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999974
No 91
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=90.00 E-value=0.94 Score=34.53 Aligned_cols=64 Identities=14% Similarity=0.057 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-ccc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~ 218 (437)
.+..+...+...++|..|+..+.+-+.. . + .....++..|.++...++|.+|..+|..++. .|.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~-------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL-D-------P-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH-C-------C-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 4566788899999999999998886653 1 1 1355778889999999999999999999998 554
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=89.95 E-value=1.7 Score=33.59 Aligned_cols=84 Identities=13% Similarity=0.260 Sum_probs=55.4
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. .|.. ...+..+..++...+++..|+..+++-+.. . +. ....++.-|.++.
T Consensus 48 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-------~~-~~~~~~~la~~~~ 114 (136)
T 2fo7_A 48 QGDYDEAIEYYQKALEL-DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-------PR-SAEAWYNLGNAYY 114 (136)
T ss_dssp HTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-C-------TT-CHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH-CCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-------CC-ChHHHHHHHHHHH
Confidence 34444566666666544 3322 234566778888888899988888775542 1 11 2334556788888
Q ss_pred HHhhHHHHHHHHHHHhc
Q psy9642 199 ALKNYERALYFFEVIIT 215 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~ 215 (437)
..++|.+|..+|..++.
T Consensus 115 ~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 115 KQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHc
Confidence 88899999999988876
No 93
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=89.94 E-value=0.77 Score=36.77 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 145 SLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 145 ~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..+..+...++..++|..|+..+.+-+.. . + .....++..|.++...++|.+|..+|..++. .|..
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~-------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR-N-------P-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh-C-------c-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 36777888999999999999998886653 1 1 1356778889999999999999999999998 6653
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=89.85 E-value=2.8 Score=36.88 Aligned_cols=99 Identities=12% Similarity=0.118 Sum_probs=61.7
Q ss_pred HhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCC----------------
Q psy9642 116 VMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGP---------------- 179 (437)
Q Consensus 116 ~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~---------------- 179 (437)
....+..-.++..+..++.. +|.. ...+..+..+....+++..|+....+-+.- .+...
T Consensus 64 ~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQK-APNN---VDCLEACAEMQVCRGQEKDALRMYEKILQL-EADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHhHH
Confidence 33455556677777776654 4432 246677778888888888888877664431 11100
Q ss_pred -----------CCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 180 -----------QFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 180 -----------~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
...+...-.-+|..|+.+...++|.+|..+|+.++. .|..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 139 EKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 000000111245678888889999999999999998 6764
No 95
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=89.66 E-value=1.9 Score=38.03 Aligned_cols=61 Identities=10% Similarity=-0.048 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT 215 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~ 215 (437)
.+..+..++...++|..|+..+.+-+.. . + .....++.-|.++...++|.+|..+|..++.
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKR-A-------P-EDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-------c-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555566666666666666666554432 1 1 1234455566666666666666666666665
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=89.59 E-value=2.6 Score=38.16 Aligned_cols=91 Identities=14% Similarity=0.211 Sum_probs=65.3
Q ss_pred CCcchHHHHHHHHHhCCCCcchhhH--------------HHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhH
Q psy9642 122 PQRGIPLIQTAIKKIQTSDSQLTSL--------------HSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFL 187 (437)
Q Consensus 122 ~~~~i~~l~~ai~rl~~~~~~lT~~--------------h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l 187 (437)
.-.++..+..++... |........ +..+..+....++|..|+..+.+-+..... .....
T Consensus 113 ~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~ 185 (261)
T 3qky_A 113 TRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD------TPWAD 185 (261)
T ss_dssp HHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------STTHH
T ss_pred HHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC------CchHH
Confidence 345677777776664 443322222 266788899999999999999886653211 12255
Q ss_pred HHHHHHHHHHHHH----------hhHHHHHHHHHHHhc-cccc
Q psy9642 188 QYFYYGGMIYLAL----------KNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 188 ~Y~Yy~G~I~~~~----------k~y~~A~~~~~~ai~-~P~~ 219 (437)
..+|..|.++..+ ++|.+|..+|..++. .|..
T Consensus 186 ~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 186 DALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 6778899999977 999999999999998 7764
No 97
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=89.42 E-value=2.4 Score=36.64 Aligned_cols=85 Identities=11% Similarity=0.162 Sum_probs=61.5
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++ +|+ ...+..+..++...++|..|+..+.+-+.. . + .....++.-|.++.
T Consensus 19 ~~~~~~A~~~~~~a~---~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-------~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ---DPH----SRICFNIGCMYTILKNMTEAEKAFTRSINR-D-------K-HLAVAYFQRGMLYY 82 (213)
T ss_dssp TTCHHHHHHHHHTSS---SCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHc---CCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-------c-cchHHHHHHHHHHH
Confidence 344444555555542 332 246778888999999999999988886653 1 1 23466778899999
Q ss_pred HHhhHHHHHHHHHHHhc-cccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..++|.+|..+|..++. .|..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~ 104 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGN 104 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCc
Confidence 99999999999999998 6654
No 98
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=89.22 E-value=2.4 Score=34.99 Aligned_cols=88 Identities=14% Similarity=0.210 Sum_probs=63.5
Q ss_pred hhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHH
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIY 197 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~ 197 (437)
..+..-.++..+..++.. +|.. ...+..+..++...+++..|+..+.+-+.. .+ .....++.-|.++
T Consensus 54 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~--------~~~~~~~~~a~~~ 120 (186)
T 3as5_A 54 KTGAVDRGTELLERSLAD-APDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEA-NP--------INFNVRFRLGVAL 120 (186)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-Cc--------HhHHHHHHHHHHH
Confidence 345556677777777655 3322 235677788899999999999888775542 11 1345667788999
Q ss_pred HHHhhHHHHHHHHHHHhc-ccc
Q psy9642 198 LALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 198 ~~~k~y~~A~~~~~~ai~-~P~ 218 (437)
...++|++|..+|..++. .|.
T Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 121 DNLGRFDEAIDSFKIALGLRPN 142 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHcCcHHHHHHHHHHHHhcCcc
Confidence 999999999999999998 554
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=89.15 E-value=2.4 Score=32.67 Aligned_cols=87 Identities=14% Similarity=0.257 Sum_probs=60.3
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+....++..+..++.. .|.. ...+..+..++...+++..|+..+.+-+.. .+ .....++..|.++.
T Consensus 14 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~--------~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 14 QGDYDEAIEYYQKALEL-DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DP--------RSAEAWYNLGNAYY 80 (136)
T ss_dssp HTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHc-CCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-CC--------CchHHHHHHHHHHH
Confidence 34444566666666544 3332 234566788889999999999888876542 11 12345567788999
Q ss_pred HHhhHHHHHHHHHHHhc-ccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~ 218 (437)
..++|.+|..+|..++. .|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT
T ss_pred HhcCHHHHHHHHHHHHHhCCC
Confidence 99999999999999988 454
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=89.01 E-value=1.1 Score=39.51 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 144 TSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 144 T~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..++..+..++...++|..|+..+.+-+.. +| +....++..|.++...++|.+|..+|+.++. .|..
T Consensus 54 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 54 SKLATELALAYKKNRNYDKAYLFYKELLQK--------AP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 345566888999999999999999887653 12 2456778889999999999999999999999 7875
No 101
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=88.91 E-value=1.4 Score=43.03 Aligned_cols=96 Identities=9% Similarity=0.059 Sum_probs=70.5
Q ss_pred HHHhhhCCCCcchHHHHHHHHHhCCC-CcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHH
Q psy9642 114 KTVMDLKTPQRGIPLIQTAIKKIQTS-DSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYY 192 (437)
Q Consensus 114 ~~~~~~~~~~~~i~~l~~ai~rl~~~-~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy 192 (437)
..+...+..-.++..+..++.. .|. +......+..+..++...+++..|+..+.+-+.. . + +....++.
T Consensus 265 ~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~-------p-~~~~~~~~ 334 (450)
T 2y4t_A 265 EELIRDGRYTDATSKYESVMKT-EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-E-------P-DNVNALKD 334 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C-------c-ccHHHHHH
Confidence 3344456666778888888764 444 3333456778888999999999999988876542 1 1 13456778
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 193 GGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 193 ~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.|.++...++|++|..+|+.++. .|..
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 89999999999999999999998 6765
No 102
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=88.88 E-value=4.8 Score=34.62 Aligned_cols=98 Identities=12% Similarity=0.154 Sum_probs=71.1
Q ss_pred hhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCC--------CCCChHhhHH
Q psy9642 117 MDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEG--------PQFDTKYFLQ 188 (437)
Q Consensus 117 ~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~--------~~~~~~~~l~ 188 (437)
...+..-.++..+..++.. +|. ....+..+..++...++|..|+..+.+-+....... .... .....
T Consensus 48 ~~~g~~~~A~~~~~~al~~-~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~ 122 (213)
T 1hh8_A 48 TILKNMTEAEKAFTRSINR-DKH---LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK-LFACE 122 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCE-EEHHH
T ss_pred HHcCCHHHHHHHHHHHHHh-Ccc---chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccC-ccchH
Confidence 3355566778888888765 343 234678888999999999999999888665321110 0011 23457
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 189 YFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 189 Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.++.-|.++...++|.+|..+|+.++. .|..
T Consensus 123 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 123 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 778999999999999999999999999 6764
No 103
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=88.83 E-value=3.1 Score=36.62 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=67.7
Q ss_pred HhhhCCCCcchHHHHHHHHHhCCCCc----chhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHh-hHHHH
Q psy9642 116 VMDLKTPQRGIPLIQTAIKKIQTSDS----QLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKY-FLQYF 190 (437)
Q Consensus 116 ~~~~~~~~~~i~~l~~ai~rl~~~~~----~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~-~l~Y~ 190 (437)
....+..-.++..++.++... |... .+...+..+..+....++|..|+....+-+.. ++.+ ....+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~ 156 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--------TSKKWKTDAL 156 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------SCHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--------CCCcccHHHH
Confidence 344566677888888887654 4432 13346778888999999999999988876542 2221 35566
Q ss_pred HHHHHHHHHHhhH---------------------------HHHHHHHHHHhc-cccc
Q psy9642 191 YYGGMIYLALKNY---------------------------ERALYFFEVIIT-TPAL 219 (437)
Q Consensus 191 Yy~G~I~~~~k~y---------------------------~~A~~~~~~ai~-~P~~ 219 (437)
+.-|.++...++. ++|..+|+.++. .|..
T Consensus 157 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 157 YSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 6777777777666 899999999998 7765
No 104
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=88.60 E-value=0.85 Score=41.02 Aligned_cols=97 Identities=12% Similarity=-0.021 Sum_probs=68.4
Q ss_pred HHHHHHHhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHH
Q psy9642 110 HQYTKTVMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQY 189 (437)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y 189 (437)
..+.......+..-.++..+..++.. +|. ....+..+..++...++|..|+..+.+-+.. .+ .....
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~al~~-~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~--------~~~~~ 113 (275)
T 1xnf_A 47 YERGVLYDSLGLRALARNDFSQALAI-RPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DP--------TYNYA 113 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCTHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHc-CCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-Cc--------cccHH
Confidence 33445555677777888888887765 332 2335677788888888898888888776542 11 12356
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 190 FYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 190 ~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
++.-|.++...++|.+|..+|..++. .|..
T Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 114 HLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 67778888888899999999988887 5654
No 105
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=88.45 E-value=1.3 Score=38.80 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=55.9
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++... |.. ...+..+..++...+++..|+..+.+-+.. .+ +....++.-|.++.
T Consensus 104 ~~~~~~A~~~~~~~~~~~-~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~--------~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG-MEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NE--------NDTEARFQFGMCLA 170 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CC--------ccHHHHHHHHHHHH
Confidence 445556666777666543 322 224566777778888888888777765542 11 12345567777788
Q ss_pred HHhhHHHHHHHHHHHhc-ccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~ 218 (437)
..++|++|..+|..++. .|.
T Consensus 171 ~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHCTT
T ss_pred HcCCHHHHHHHHHHHHHhCcc
Confidence 88888888888888877 454
No 106
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=88.45 E-value=2.1 Score=37.23 Aligned_cols=54 Identities=19% Similarity=0.365 Sum_probs=43.4
Q ss_pred CchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 159 NFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 159 ~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
++..++.++..-+.. . ++.+.-.+.||-|..++..++|.+|.++++.+++ -|..
T Consensus 50 ~~~~gI~lLe~ll~~-~------~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 50 DIRKGIVLLEELLPK-G------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHHHH-S------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhc-C------CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 566888888775442 1 2446778889999999999999999999999999 7865
No 107
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.41 E-value=1.5 Score=38.72 Aligned_cols=69 Identities=14% Similarity=0.060 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q psy9642 147 HSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT 215 (437)
Q Consensus 147 h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~ 215 (437)
-.+.++-.+..+.|+.|..+-+.-+.--..+...+++....+-.+|-|-.+...++|.+|..+|.+|+.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 457789999999999996555553332223334568888999999999999999999999999999876
No 108
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=88.29 E-value=3.1 Score=36.29 Aligned_cols=110 Identities=11% Similarity=0.037 Sum_probs=72.4
Q ss_pred hCCCCcchHHHHHHHHHhCCCC-c----ch----hhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSD-S----QL----TSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQY 189 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~-~----~l----T~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y 189 (437)
.+..--++.....|+.- +|+. . .. ...|.....+....+.|..|+...++-|.-+... ..+++ +...-
T Consensus 24 ~g~~eeAi~~Y~kAL~l-~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~-~e~~p-d~~~A 100 (159)
T 2hr2_A 24 AGEYDEAAANCRRAMEI-SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR-GELNQ-DEGKL 100 (159)
T ss_dssp HTCHHHHHHHHHHHHHH-HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-CCTTS-THHHH
T ss_pred CCCHHHHHHHHHHHHhh-CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc-ccCCC-chHHH
Confidence 34444566677776643 4441 0 11 2267777888888899999999988877632221 11233 35555
Q ss_pred H----HHHHHHHHHHhhHHHHHHHHHHHhc-ccccccCHHHHHHHHH
Q psy9642 190 F----YYGGMIYLALKNYERALYFFEVIIT-TPALAVSHIMLEGYKK 231 (437)
Q Consensus 190 ~----Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~~~s~i~vea~Kk 231 (437)
+ |..|.++..+++|++|..+|..++. .|....-.--++..|+
T Consensus 101 ~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 101 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred HHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 6 8999999999999999999999999 7876433223333444
No 109
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=88.08 E-value=1.5 Score=33.32 Aligned_cols=49 Identities=4% Similarity=0.112 Sum_probs=39.9
Q ss_pred HHHHHHHHhhc---cccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecC
Q psy9642 310 NNIKRLTKTFL---TLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKK 359 (437)
Q Consensus 310 ~~I~~l~k~Ys---~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~ 359 (437)
+.|..+-+.-. +++..+||+++|++ ...+...|.+|..+|.|...-+.+
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs-~~tV~~~L~~L~~~G~I~~~g~~~ 68 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLYSLAKKGKLQKEAGTP 68 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCC-HHHHHHHHHHHHHHTSEEEECSSS
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEecCCCC
Confidence 44545555556 89999999999998 689999999999999998765544
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=88.00 E-value=2.8 Score=37.32 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=67.7
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. .|.+......+..+..+....++|..|+...++-+..... ....-.-+|+.|+++.
T Consensus 17 ~g~~~~A~~~~~~~~~~-~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~------~~~~~~a~~~~g~~~~ 89 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT------HPNIDYVMYMRGLTNM 89 (225)
T ss_dssp HTCHHHHHHHHHHHHHH-CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CTTHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC------CCcHHHHHHHHHHHHH
Confidence 45556677778777765 4555455567888899999999999999998887653211 1112223567888887
Q ss_pred H------------------HhhHHHHHHHHHHHhc-cccc
Q psy9642 199 A------------------LKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~------------------~k~y~~A~~~~~~ai~-~P~~ 219 (437)
. .+++.+|...|..++. .|..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~ 129 (225)
T 2yhc_A 90 ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS 129 (225)
T ss_dssp HHHC--------------CCHHHHHHHHHHHHHHTTCTTC
T ss_pred hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC
Confidence 6 4799999999999999 7865
No 111
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.99 E-value=5.3 Score=37.14 Aligned_cols=112 Identities=12% Similarity=0.043 Sum_probs=75.4
Q ss_pred hCCCCcchHHHHHHHHHhCCC--CcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTS--DSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~--~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
.+..-.++..+..|+...... +......+..+..++...++|..|+..+++-+.-....+ +.......++-.|.+
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g---~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG---QFRRGANFKFELGEI 126 (292)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Confidence 455566777777776654222 222345677888889999999999999888765432211 233456677788999
Q ss_pred HHHH-hhHHHHHHHHHHHhc-ccccccCHHHHHHHHHHH
Q psy9642 197 YLAL-KNYERALYFFEVIIT-TPALAVSHIMLEGYKKYL 233 (437)
Q Consensus 197 ~~~~-k~y~~A~~~~~~ai~-~P~~~~s~i~vea~Kk~i 233 (437)
|... ++|++|..+|+.++. .|.........+++.++.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 165 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 9996 999999999999998 564432223344454443
No 112
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=87.81 E-value=1.2 Score=43.05 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=64.5
Q ss_pred hhCCCCcchHHHHHHHHHhCCCCcc--------------hhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCCh
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSDSQ--------------LTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDT 183 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~~~--------------lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~ 183 (437)
..+..-.++..+..|+... |.... ....+..+..+++..++|..|+..+++-+.. . +
T Consensus 191 ~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~-------p 261 (338)
T 2if4_A 191 KEEKLEEAMQQYEMAIAYM-GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE-E-------E 261 (338)
T ss_dssp SSSCCHHHHHHHHHHHHHS-CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-C-------T
T ss_pred hcCCHHHHHHHHHHHHHHh-ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-------C
Confidence 3455556666666665443 22110 1137788889999999999999998886652 1 1
Q ss_pred HhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 184 KYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 184 ~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
+....+|..|.++..+++|.+|..+|..++. .|..
T Consensus 262 -~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 262 -KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp -TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 2466788999999999999999999999998 6754
No 113
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=87.72 E-value=2.9 Score=42.58 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=66.6
Q ss_pred CCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHH
Q psy9642 120 KTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLA 199 (437)
Q Consensus 120 ~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~ 199 (437)
+....++..+..|+.. +|.. ...+..+..++...++|..|+....+-+.- ++ +....+|..|.++..
T Consensus 20 g~~~~A~~~~~~Al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p-~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 20 KDYENAIKFYSQAIEL-NPSN---AIYYGNRSLAYLRTECYGYALGDATRAIEL--------DK-KYIKGYYRRAASNMA 86 (477)
T ss_dssp TCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CT-TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-CCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CC-CCHHHHHHHHHHHHH
Confidence 3344566667776654 4432 446778889999999999999998887652 12 245677888999999
Q ss_pred HhhHHHHHHHHHHHhc-ccccc
Q psy9642 200 LKNYERALYFFEVIIT-TPALA 220 (437)
Q Consensus 200 ~k~y~~A~~~~~~ai~-~P~~~ 220 (437)
+++|++|..+|+.++. .|...
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDK 108 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCT
T ss_pred cCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999998 67653
No 114
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=87.71 E-value=2 Score=38.62 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=67.2
Q ss_pred hhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHH
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIY 197 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~ 197 (437)
..+..-.++..+..++.. +|... ..+..+..++...++|..|+..+.+-+. ... ++......++..|.++
T Consensus 15 ~~~~~~~A~~~~~~~l~~-~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~-----~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 15 KNNNYAEAIEVFNKLEAK-KYNSP---YIYNRRAVCYYELAKYDLAQKDIETYFS-KVN-----ATKAKSADFEYYGKIL 84 (272)
T ss_dssp TTTCHHHHHHHHHHHHHT-TCCCS---TTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSC-----TTTCCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh-CCCcH---HHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccC-----chhHHHHHHHHHHHHH
Confidence 345555677777777654 44322 2566777899999999999999888765 211 2222355578899999
Q ss_pred HHHhhHHHHHHHHHHHhc-cccc
Q psy9642 198 LALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 198 ~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
...++|.+|..+|..++. .|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~ 107 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTR 107 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHcccHHHHHHHHHHHHhcCccc
Confidence 999999999999999999 6764
No 115
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=87.60 E-value=1.5 Score=33.92 Aligned_cols=66 Identities=24% Similarity=0.239 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 145 SLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 145 ~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..+..+...+...++|..|+..+.+-+.. . + .....++..|.++...++|.+|..+|..++. .|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~-------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL-N-------P-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc-C-------C-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 35667788899999999999988886653 1 1 1355677889999999999999999999998 5653
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=87.56 E-value=1.7 Score=40.54 Aligned_cols=89 Identities=12% Similarity=0.075 Sum_probs=67.6
Q ss_pred hhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHH
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIY 197 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~ 197 (437)
..+..-.++..+..|+.. +|.. ...+..+..+....++|..|+..+.+-+.. ++ +....+|..|.++
T Consensus 16 ~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 16 VGRKYPEAAACYGRAITR-NPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL--------DG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH-CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------CT-TCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh-CCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CC-CCHHHHHHHHHHH
Confidence 345555677778877765 4432 346778889999999999999888876542 22 2456778889999
Q ss_pred HHHhhHHHHHHHHHHHhc-cccc
Q psy9642 198 LALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 198 ~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..+++|++|..+|..++. .|..
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999998 6653
No 117
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=87.40 E-value=5.2 Score=37.51 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=53.4
Q ss_pred cchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhH
Q psy9642 124 RGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNY 203 (437)
Q Consensus 124 ~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y 203 (437)
.++..+..++.. +|... -...+..+..++...++|..|+..+.+-+.. . + +....++.-|.++...++|
T Consensus 199 ~A~~~~~~a~~~-~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-------~-~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 199 EVKELFLAAVRL-DPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-R-------P-NDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHH-STTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHh-CcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-------c-CCHHHHHHHHHHHHHcCCH
Confidence 355566665543 44321 2335667777788888888888877765542 1 1 1234556777788888888
Q ss_pred HHHHHHHHHHhc-ccc
Q psy9642 204 ERALYFFEVIIT-TPA 218 (437)
Q Consensus 204 ~~A~~~~~~ai~-~P~ 218 (437)
.+|..+|..++. .|.
T Consensus 268 ~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 268 EEAVAAYRRALELQPG 283 (368)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 888888888877 554
No 118
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=86.99 E-value=0.67 Score=35.11 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-ccc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~ 218 (437)
.+..+..++...++|..|+..+++-+.. .+ .....++..|.++...++|++|..+|..++. .|.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL-DP--------EESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH-CC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh-Cc--------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3456677888899999999998886653 11 1345667889999999999999999999998 565
No 119
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=86.98 E-value=3 Score=37.29 Aligned_cols=87 Identities=6% Similarity=-0.153 Sum_probs=45.7
Q ss_pred hhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHH
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIY 197 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~ 197 (437)
..+..-.++..+..++.. +|.. ...+..+..++...+++..|+..+.+-+.. .+ .+. .+.++.+ +.
T Consensus 89 ~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~-------~~~-~~~~~~~-~~ 154 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLEL-DPTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQD-DP-------NDP-FRSLWLY-LA 154 (275)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-------TCH-HHHHHHH-HH
T ss_pred HccCHHHHHHHHHHHHhc-Cccc---cHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CC-------CCh-HHHHHHH-HH
Confidence 345555566666666554 2321 235556666677777777776666665432 11 111 1112222 22
Q ss_pred HHHhhHHHHHHHHHHHhc-ccc
Q psy9642 198 LALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 198 ~~~k~y~~A~~~~~~ai~-~P~ 218 (437)
...++|.+|..+|..++. .|.
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHhcCHHHHHHHHHHHHhcCCc
Confidence 455677777777766665 443
No 120
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=86.82 E-value=1.9 Score=32.49 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=40.0
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEc
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFN 366 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~ 366 (437)
.-++|.|+|...++. .+++-.-|..+..+|.|.|.||....+|.-.
T Consensus 20 Kvv~LedLA~~F~l~-t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 20 KVVLLEDLAFQMGLR-TQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp SEECHHHHHHHHCSC-HHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred CeeeHHHHHHHhCCC-hHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 458999999999998 6899999999999999999999866665544
No 121
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=86.76 E-value=3.1 Score=36.33 Aligned_cols=90 Identities=12% Similarity=0.207 Sum_probs=67.0
Q ss_pred hhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 117 MDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 117 ~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
...+..-.++..+..++.. +|. ....+..+..++...+++..|+..+.+-+.. .+ .....++..|.+
T Consensus 68 ~~~~~~~~A~~~~~~~~~~-~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~--------~~~~~~~~~a~~ 134 (243)
T 2q7f_A 68 SSVNELERALAFYDKALEL-DSS---AATAYYGAGNVYVVKEMYKEAKDMFEKALRA-GM--------ENGDLFYMLGTV 134 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TC--------CSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc-CCc---chHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHH
Confidence 3355566777888877755 332 2456778889999999999999998886543 11 123456778999
Q ss_pred HHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 197 YLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 197 ~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
+...++|++|..+|..++. .|..
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~~~~ 158 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELNEND 158 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhccHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999998 5653
No 122
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=86.74 E-value=2.6 Score=37.37 Aligned_cols=90 Identities=21% Similarity=0.178 Sum_probs=67.8
Q ss_pred hhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 117 MDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 117 ~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
...+..-.++..++.++. ++|.. ...+..+..++...+.+..|+..+++-+.- +| +....++.-|.+
T Consensus 16 ~~~g~~~~A~~~~~~al~-~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P-~~~~a~~~lg~~ 82 (217)
T 2pl2_A 16 YALGRYDAALTLFERALK-ENPQD---PEALYWLARTQLKLGLVNPALENGKTLVAR--------TP-RYLGGYMVLSEA 82 (217)
T ss_dssp HHTTCHHHHHHHHHHHHT-TSSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT-TCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-hCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CcHHHHHHHHHH
Confidence 335555667777777653 44432 346788889999999999999998886652 12 244566788999
Q ss_pred HHHH-----------hhHHHHHHHHHHHhc-cccc
Q psy9642 197 YLAL-----------KNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 197 ~~~~-----------k~y~~A~~~~~~ai~-~P~~ 219 (437)
+... ++|.+|..+|..++. .|..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 117 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc
Confidence 9999 999999999999998 7764
No 123
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=86.68 E-value=7.4 Score=35.42 Aligned_cols=61 Identities=20% Similarity=0.142 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT 215 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~ 215 (437)
.+..+..++...+++..|+..+.+-+.. . + +....++.-|.++...++|.+|..+|+.++.
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVEL-R-------P-DDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-C-------C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455556666666666666666554431 1 1 1223445556666666666666666666665
No 124
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=86.37 E-value=1.7 Score=36.77 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 144 TSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 144 T~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
+.++..+...+...|+|..|+...++-+.. + | +....++.-|.++...++|.+|..++..++. .|..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-~-------p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~ 72 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-D-------P-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS 72 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-------C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence 457888999999999999999998886642 1 2 2456677889999999999999999999998 5553
No 125
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=86.30 E-value=1.7 Score=38.65 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=66.6
Q ss_pred hhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHh-----------CCchHHHhhhhHhhhhhhcCCCCCChHh
Q psy9642 117 MDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLA-----------QNFKPALEFLDVDITTIANEGPQFDTKY 185 (437)
Q Consensus 117 ~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~-----------~~y~~Al~il~~~I~~~~~~~~~~~~~~ 185 (437)
...+..-.++..++.++.. +|.. ...+..+..++... +++..|+..+++-+.. +| +
T Consensus 50 ~~~g~~~~A~~~~~~al~~-~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P-~ 116 (217)
T 2pl2_A 50 LKLGLVNPALENGKTLVAR-TPRY---LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NP-R 116 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CT-T
T ss_pred HHcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------Cc-c
Confidence 3355556677788877654 5543 34677888888888 9999999998887652 12 2
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc
Q psy9642 186 FLQYFYYGGMIYLALKNYERALYFFEVIITTP 217 (437)
Q Consensus 186 ~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~~P 217 (437)
....++..|.++...++|++|..+|+.++..-
T Consensus 117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 117 YAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 45667789999999999999999999999854
No 126
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.12 E-value=3 Score=33.27 Aligned_cols=70 Identities=10% Similarity=-0.033 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 144 TSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 144 T~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
...+..+...+...++|..|+..+.+-+.. .+ +.......++..|.++...++|.+|..+|..++. .|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~-----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL-DA-----TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-CC-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-cc-----cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 346777888999999999999988876542 11 2233577788899999999999999999999998 5643
No 127
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=86.08 E-value=3.6 Score=35.21 Aligned_cols=86 Identities=9% Similarity=0.060 Sum_probs=58.1
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. +|.. ...+..+..++...+++..|+..+++-+.. . + .....++..|.++.
T Consensus 21 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-------~-~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 21 GQDYRQATASIEDALKS-DPKN---ELAWLVRAEIYQYLKVNDKAQESFRQALSI-K-------P-DSAEINNNYGWFLC 87 (225)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHh-Cccc---hHHHHHHHHHHHHcCChHHHHHHHHHHHHh-C-------C-CChHHHHHHHHHHH
Confidence 44445566666666654 3322 335667778888888899888888776542 1 1 12345567788888
Q ss_pred HH-hhHHHHHHHHHHHhccc
Q psy9642 199 AL-KNYERALYFFEVIITTP 217 (437)
Q Consensus 199 ~~-k~y~~A~~~~~~ai~~P 217 (437)
.. ++|.+|..+|+.++..|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADP 107 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTST
T ss_pred HhcCcHHHHHHHHHHHHcCc
Confidence 88 89999999998888843
No 128
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=85.63 E-value=13 Score=37.46 Aligned_cols=91 Identities=9% Similarity=-0.003 Sum_probs=71.1
Q ss_pred HHhhhCCC-CcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHH
Q psy9642 115 TVMDLKTP-QRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYG 193 (437)
Q Consensus 115 ~~~~~~~~-~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~ 193 (437)
.....+.. -.++..++.|+.. +|.. ...+..+..++...++|..|+..+.+-+.. ++. ...++.-
T Consensus 111 ~~~~~g~~~~~A~~~~~~al~~-~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~--~~~~~~l 176 (474)
T 4abn_A 111 ALNVTPDYSPEAEVLLSKAVKL-EPEL---VEAWNQLGEVYWKKGDVTSAHTCFSGALTH--------CKN--KVSLQNL 176 (474)
T ss_dssp HHTSSSSCCHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------CCC--HHHHHHH
T ss_pred HHHhccccHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCC--HHHHHHH
Confidence 34445666 7788888888754 4532 347888899999999999999998887642 222 3778889
Q ss_pred HHHHHHH---------hhHHHHHHHHHHHhc-cccc
Q psy9642 194 GMIYLAL---------KNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 194 G~I~~~~---------k~y~~A~~~~~~ai~-~P~~ 219 (437)
|.++... ++|.+|..+|+.++. .|..
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 212 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 9999999 999999999999998 6765
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=85.61 E-value=2 Score=35.14 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.+..+...+...++|..|+..+.+-+.. . + .....++..|.++...++|.+|..+|..++. .|..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~-~-------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL-N-------P-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-C-------C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 5667788899999999999998886653 1 1 1356677889999999999999999999998 5653
No 130
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=85.52 E-value=2.4 Score=40.09 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=62.2
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. +|... -...+..+..++...++|..|+..+.+-+.. . + +....++.-|.++.
T Consensus 190 ~g~~~~A~~~~~~al~~-~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-------p-~~~~~~~~l~~~~~ 258 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQ-NGDMI-DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-R-------P-EDYSLWNRLGATLA 258 (365)
T ss_dssp CHHHHHHHHHHHHHHHH-SCSSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh-CcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C-------C-CCHHHHHHHHHHHH
Confidence 33444567777777655 34311 2335677888888899999998888876542 1 1 12445677888888
Q ss_pred HHhhHHHHHHHHHHHhc-cccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..++|.+|..+|+.++. .|..
T Consensus 259 ~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 259 NGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC
T ss_pred HcCCHHHHHHHHHHHHhcCCCc
Confidence 89999999999999988 6653
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=85.44 E-value=2.7 Score=32.13 Aligned_cols=65 Identities=14% Similarity=0.310 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-ccc
Q psy9642 145 SLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 145 ~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~ 218 (437)
..+..+...+...+++..|+..+.+-+.. . + +....++..|.++...++|.+|..+|..++. .|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~-------~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-------P-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-C-------c-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 35667778899999999999988876643 1 1 1345667788999999999999999999987 454
No 132
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=85.18 E-value=2.9 Score=42.47 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q psy9642 187 LQYFYYGGMIYLALKNYERALYFFEVIIT 215 (437)
Q Consensus 187 l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~ 215 (437)
...++.-|.++...++|++|.++|+.++.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33444444455555555555555555544
No 133
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=85.14 E-value=19 Score=33.39 Aligned_cols=85 Identities=5% Similarity=-0.050 Sum_probs=61.5
Q ss_pred CcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhh
Q psy9642 123 QRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKN 202 (437)
Q Consensus 123 ~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~ 202 (437)
-.++..+..|+..++|.. ..+|..+..+....+.+..|..+.++-+.. . +.+.-..++.-|.++...++
T Consensus 81 ~~A~~~~~rAl~~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~-------p~~~~~~~~~~~~~~~~~~~ 149 (308)
T 2ond_A 81 DEAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAI-E-------DIDPTLVYIQYMKFARRAEG 149 (308)
T ss_dssp HHHHHHHHHHHTTTTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-S-------SSCTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-c-------ccCccHHHHHHHHHHHHhcC
Confidence 456778888887676643 347888889999999999998888887652 1 11111133344677788899
Q ss_pred HHHHHHHHHHHhcc-cc
Q psy9642 203 YERALYFFEVIITT-PA 218 (437)
Q Consensus 203 y~~A~~~~~~ai~~-P~ 218 (437)
+++|...|..++.. |.
T Consensus 150 ~~~A~~~~~~a~~~~p~ 166 (308)
T 2ond_A 150 IKSGRMIFKKAREDART 166 (308)
T ss_dssp HHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999994 54
No 134
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=85.13 E-value=2.1 Score=33.01 Aligned_cols=46 Identities=4% Similarity=0.135 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhc---cccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEE
Q psy9642 309 KNNIKRLTKTFL---TLSLADVASRVQLGTPVQAEIYILKMISQNEIYAT 355 (437)
Q Consensus 309 r~~I~~l~k~Ys---~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~ 355 (437)
+..|..+-+... +++..+||+.||++ ...+...|.+|..+|.|.-.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs-r~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEec
Confidence 344555555667 89999999999998 68999999999999998654
No 135
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=84.76 E-value=4.3 Score=37.49 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=22.5
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHh
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVD 170 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~ 170 (437)
.+.+-.++..+..++.. .|.. ...+..+..++...+++..|+..+.+-
T Consensus 167 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 167 EGEPRKAISDLKAASKL-KSDN---TEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp TTCHHHHHHHHHHHHTT-CSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444445555544432 2211 124445555555556665555555443
No 136
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=84.72 E-value=3.5 Score=40.79 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=70.0
Q ss_pred HHHhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCC-chHHHhhhhHhhhhhhcCCCCCChHhhHHHHHH
Q psy9642 114 KTVMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQN-FKPALEFLDVDITTIANEGPQFDTKYFLQYFYY 192 (437)
Q Consensus 114 ~~~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~-y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy 192 (437)
..+...+..-.++..+..++. ++|. ..+ .+..+..++...+. |..|+..+++-|.. ++. ....+++
T Consensus 105 ~~~~~~g~~~~Al~~~~~al~-l~P~--~~~-a~~~~g~~l~~~g~d~~eAl~~~~~al~l--------~P~-~~~a~~~ 171 (382)
T 2h6f_A 105 AVLQRDERSERAFKLTRDAIE-LNAA--NYT-VWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPK-NYQVWHH 171 (382)
T ss_dssp HHHHHTCCCHHHHHHHHHHHH-HCTT--CHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTT-CHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHH-hCcc--CHH-HHHHHHHHHHHcccCHHHHHHHHHHHHHH--------CCC-CHHHHHH
Confidence 444456677788888888764 4553 333 56667777888885 99999999887763 222 5567788
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 193 GGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 193 ~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.|.++..+++|.+|..+|..++. .|..
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~ 199 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKN 199 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence 99999999999999999999998 6765
No 137
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=83.95 E-value=6.1 Score=30.89 Aligned_cols=70 Identities=9% Similarity=0.192 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhCCchHHHhhhhHhhhhhhcCC-CCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 147 HSDLCQLCLLAQNFKPALEFLDVDITTIANEG-PQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 147 h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~-~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
...+.+.++..++|..|..-+..-+....... ...+ ....+++-|.++..++++.+|..+++.++. .|..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~---~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTID---KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSC---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCccc---HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 34567889999999999888877655433221 1222 334456779999999999999999999998 7875
No 138
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=83.73 E-value=2.8 Score=39.38 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=57.3
Q ss_pred HhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHH
Q psy9642 116 VMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGM 195 (437)
Q Consensus 116 ~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~ 195 (437)
+...+.+-.++..++.++.. +|.. ..+.+....+.+....+.+..|+.++++-+.. ++ +....++..|+
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~-~p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p--------~~~~~~~~la~ 208 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQ-DEDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CS--------PTLLLLNGQAA 208 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SC--------CCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhh-CcCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CC--------CcHHHHHHHHH
Confidence 33455556666667666544 4432 22222233334444456788887777765542 11 13456667888
Q ss_pred HHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 196 IYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 196 I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
++..+++|++|..+|+.++. .|..
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 88888999999999999888 6654
No 139
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=83.57 E-value=15 Score=36.25 Aligned_cols=88 Identities=14% Similarity=0.167 Sum_probs=66.7
Q ss_pred hCC-CCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHH
Q psy9642 119 LKT-PQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIY 197 (437)
Q Consensus 119 ~~~-~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~ 197 (437)
.+. .-.++..+..|+. ++|.. ...+..+..++...+.|..|+...++-+.. ++. ...-+++.|.++
T Consensus 144 ~g~d~~eAl~~~~~al~-l~P~~---~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~-~~~a~~~lg~~~ 210 (382)
T 2h6f_A 144 LQKDLHEEMNYITAIIE-EQPKN---YQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAK-NYHAWQHRQWVI 210 (382)
T ss_dssp TTCCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTT-CHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHH-HCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------Ccc-CHHHHHHHHHHH
Confidence 443 4567777877765 45543 235667777888889999999999887753 222 445668899999
Q ss_pred HHHhhHHHHHHHHHHHhc-cccc
Q psy9642 198 LALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 198 ~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..+++|.+|..+|..++. .|..
T Consensus 211 ~~~g~~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 211 QEFKLWDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHcCChHHHHHHHHHHHHhCCCC
Confidence 999999999999999999 7765
No 140
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=82.30 E-value=1.1 Score=42.17 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-ccc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~ 218 (437)
.+..+...++..++|..|+..+.+-+.. .+ .....++..|.++...++|.+|..+|..++. .|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 130 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 130 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC
Confidence 3445566666666666666666655431 11 1233445556666666666666666666666 443
No 141
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=81.70 E-value=3.9 Score=34.01 Aligned_cols=74 Identities=8% Similarity=0.066 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcC---CCCCC------hHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANE---GPQFD------TKYFLQYFYYGGMIYLALKNYERALYFFEVIIT- 215 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~---~~~~~------~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~- 215 (437)
.+......++..++|..|+....+-+...... ...-+ .......++..|.++..+++|.+|..++..++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 45566778889999999998887766542110 00011 234567788899999999999999999999998
Q ss_pred cccc
Q psy9642 216 TPAL 219 (437)
Q Consensus 216 ~P~~ 219 (437)
.|..
T Consensus 93 ~p~~ 96 (162)
T 3rkv_A 93 EETN 96 (162)
T ss_dssp STTC
T ss_pred CCcc
Confidence 5654
No 142
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=81.36 E-value=4.8 Score=37.98 Aligned_cols=87 Identities=15% Similarity=0.041 Sum_probs=64.8
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. +|.. ...+..+..++...++|..|+..+.+-+.. . + +....++..|.++.
T Consensus 78 ~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-------p-~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQ-DPGD---AEAWQFLGITQAENENEQAAIVALQRCLEL-Q-------P-NNLKALMALAVSYT 144 (365)
T ss_dssp HTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-CcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-------C-CCHHHHHHHHHHHH
Confidence 34445566677776654 3432 446788889999999999999998886652 1 1 13456778899999
Q ss_pred HHhhHHHHHHHHHHHhc-ccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~ 218 (437)
..++|.+|..+|..++. .|.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPK 165 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHH
T ss_pred ccccHHHHHHHHHHHHHhCcc
Confidence 99999999999999998 565
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=81.29 E-value=4.6 Score=33.87 Aligned_cols=88 Identities=8% Similarity=0.143 Sum_probs=62.0
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH-H
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI-Y 197 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I-~ 197 (437)
.+..-.++..+..++.. +|.. ...+..+..++...++|..|+..+.+-+.. .+ . ...+++.-|.+ +
T Consensus 23 ~~~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p-------~-~~~~~~~la~~l~ 89 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA-NPQN---SEQWALLGEYYLWQNDYSNSLLAYRQALQL-RG-------E-NAELYAALATVLY 89 (177)
T ss_dssp ----CCCCHHHHHHHHH-CCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HC-------S-CHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC-------C-CHHHHHHHHHHHH
Confidence 34455677788887765 3432 246788899999999999999998886643 21 1 23455566777 8
Q ss_pred HHHhhH--HHHHHHHHHHhc-cccc
Q psy9642 198 LALKNY--ERALYFFEVIIT-TPAL 219 (437)
Q Consensus 198 ~~~k~y--~~A~~~~~~ai~-~P~~ 219 (437)
...++| .+|..+|..++. .|..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred HhcCCcchHHHHHHHHHHHHhCCCc
Confidence 888999 999999999998 5654
No 144
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=81.12 E-value=7.7 Score=37.54 Aligned_cols=88 Identities=15% Similarity=0.086 Sum_probs=66.6
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.++..+..++.. +|.. ...+..+..++...+++..|+..+.+-+.. . + +....++..|.++.
T Consensus 39 ~g~~~~A~~~~~~~l~~-~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-------p-~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDG-DPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIQL-K-------M-DFTAARLQRGHLLL 105 (450)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-CCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-------C-CcHHHHHHHHHHHH
Confidence 45556677777777654 4432 446777888999999999999998886653 1 1 23566778899999
Q ss_pred HHhhHHHHHHHHHHHhc-cccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..++|.+|..+|+.++. .|..
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~ 127 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSE 127 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCH
T ss_pred HcCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999998 5653
No 145
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=81.06 E-value=7.2 Score=32.32 Aligned_cols=89 Identities=17% Similarity=0.053 Sum_probs=66.3
Q ss_pred hhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHH
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIY 197 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~ 197 (437)
..+..-.++..+..++.. +|.. ...|..+..++...+++..|+....+-+.- . +. ....++.-|.++
T Consensus 43 ~~~~~~~A~~~~~~al~~-~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~-------p~-~~~~~~~la~~~ 109 (150)
T 4ga2_A 43 EAKEYDLAKKYICTYINV-QERD---PKAHRFLGLLYELEENTDKAVECYRRSVEL-N-------PT-QKDLVLKIAELL 109 (150)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------TT-CHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCchHHHHHHHHHHHHh-C-------CC-CHHHHHHHHHHH
Confidence 345556678888887654 5543 347888999999999999999988886652 1 22 345667889999
Q ss_pred HHHhhHHHHHH-HHHHHhc-cccc
Q psy9642 198 LALKNYERALY-FFEVIIT-TPAL 219 (437)
Q Consensus 198 ~~~k~y~~A~~-~~~~ai~-~P~~ 219 (437)
...++|.+|.. +++.++. .|..
T Consensus 110 ~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 110 CKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp HHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred HHcCChHHHHHHHHHHHHHhCcCC
Confidence 99999987665 5689998 7865
No 146
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=80.88 E-value=4.9 Score=29.45 Aligned_cols=34 Identities=3% Similarity=0.148 Sum_probs=31.3
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYA 354 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A 354 (437)
..++.++||+.++++ ...+.++|..|..+|.|..
T Consensus 24 ~~~s~~eLA~~lgls-r~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQVP-KKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHCSC-HHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEec
Confidence 469999999999998 8999999999999999865
No 147
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=80.42 E-value=38 Score=31.63 Aligned_cols=133 Identities=12% Similarity=0.054 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHhCC--CCcchhhHHHHHHHHHH
Q psy9642 78 YQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQT--SDSQLTSLHSDLCQLCL 155 (437)
Q Consensus 78 ~~~~~~~~~~~fl~~fd~~Qir~a~~~~~~l~~~~~~~~~~~~~~~~~i~~l~~ai~rl~~--~~~~lT~~h~~l~~l~L 155 (437)
+....+.++.......+... ..+..+..++. .....+..-.++..+..++..... .+......+..+..++.
T Consensus 65 ~A~~~~~~al~~~~~~~~~~--~~~~~~~~la~----~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 138 (406)
T 3sf4_A 65 KALEYHHHDLTLARTIGDQL--GEAKASGNLGN----TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 138 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccH--HHHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 44556677766665542211 11223333332 333355566677777777765532 22334557778888899
Q ss_pred HhCC--------------------chHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q psy9642 156 LAQN--------------------FKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT 215 (437)
Q Consensus 156 ~~~~--------------------y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~ 215 (437)
..++ |..|+..+.+-+...... -+.......++.-|.++...++|.+|..+|..++.
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL---GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999 999988887765433221 13455677888899999999999999999999998
Q ss_pred -cccc
Q psy9642 216 -TPAL 219 (437)
Q Consensus 216 -~P~~ 219 (437)
.|..
T Consensus 216 ~~~~~ 220 (406)
T 3sf4_A 216 IAKEF 220 (406)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 4554
No 148
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=80.18 E-value=4.9 Score=43.47 Aligned_cols=86 Identities=17% Similarity=0.219 Sum_probs=44.0
Q ss_pred CCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHH
Q psy9642 120 KTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLA 199 (437)
Q Consensus 120 ~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~ 199 (437)
++.-.++..++.|+.. +|.. ...|..+..++...+.+..|+....+-+.- . + +....++.-|.++..
T Consensus 23 G~~~eAi~~~~kAl~l-~P~~---~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-~-------P-~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 23 GNIEEAVRLYRKALEV-FPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRI-S-------P-TFADAYSNMGNTLKE 89 (723)
T ss_dssp TCHHHHHHHHHHHHHH-CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-------C-CCHHHHHHHHHHHHH
Confidence 3334455555555432 3321 234555556666666666666555554431 1 1 133444555666666
Q ss_pred HhhHHHHHHHHHHHhc-ccc
Q psy9642 200 LKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 200 ~k~y~~A~~~~~~ai~-~P~ 218 (437)
+++|++|.++|+.++. .|.
T Consensus 90 ~g~~~~A~~~~~kAl~l~P~ 109 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQINPA 109 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 6666666666666665 444
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=79.84 E-value=3.4 Score=38.51 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.+..+...+...++|..|+..+++-+.. .+ +...+++..|.++..+++|.+|..+|+.++. .|..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITR--------NP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 4556778889999999999999887763 11 2467788999999999999999999999998 5654
No 150
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=79.82 E-value=12 Score=30.63 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=61.6
Q ss_pred HHHHHhh--ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEccCCCCCCchHHHHHHHHHHHHHHH
Q psy9642 313 KRLTKTF--LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDNPQRFNNPLTFAQIESNIRACMH 390 (437)
Q Consensus 313 ~~l~k~Y--s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~e~~~~l~~~i~~~~~ 390 (437)
.+|...| .-.+..+++..++++ +.++..++..++..|.+...- +++ .| ..+..+.+.+.+...+.
T Consensus 10 ~~i~~~~~~~p~~~~~la~~~~~~-~~~~~~~l~~l~~~G~l~~i~---~~~-~~--------~~~~~~~~~~~l~~~~~ 76 (121)
T 2pjp_A 10 QKAEPLFGDEPWWVRDLAKETGTD-EQAMRLTLRQAAQQGIITAIV---KDR-YY--------RNDRIVEFANMIRDLDQ 76 (121)
T ss_dssp HHHGGGCSSSCEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEE---TTE-EE--------EHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEEec---CCc-eE--------CHHHHHHHHHHHHHHHH
Confidence 3444445 346888999999997 889999999999999886643 222 22 23445666666655544
Q ss_pred HHH--HHHHHHHHhhCCHHHHHHh
Q psy9642 391 LDG--KFQAMEEEILVNPLYVKKA 412 (437)
Q Consensus 391 L~~--~~~~~d~~l~~~~~yi~k~ 412 (437)
-+. .+.++.+.+++|+.|.--.
T Consensus 77 ~~~~it~ae~Rd~lg~sRK~ai~l 100 (121)
T 2pjp_A 77 ECGSTCAADFRDRLGVGRKLAIQI 100 (121)
T ss_dssp HHSSEEHHHHHHHHTSCHHHHHHH
T ss_pred HCCCccHHHHHHHHCCcHHHHHHH
Confidence 455 7889999999999977443
No 151
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=79.61 E-value=12 Score=38.55 Aligned_cols=97 Identities=9% Similarity=-0.024 Sum_probs=67.8
Q ss_pred hCCCCcchHHHHHHHHHhC----CC-CcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQ----TS-DSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYG 193 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~----~~-~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~ 193 (437)
.+..-.++..+..++.... ++ +.+++ ....+..++...+.|..|+++..+-+.-.... -+-+..+.+.-++--
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~-~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~-lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLR-LLSIASEVLSYLQAYEEASHYARRMVDGYMKL-YHHNNAQLGMAVMRA 399 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-SCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHH
Confidence 3444455666666665432 32 44444 44567888999999999998887754432211 122455688888999
Q ss_pred HHHHHHHhhHHHHHHHHHHHhccc
Q psy9642 194 GMIYLALKNYERALYFFEVIITTP 217 (437)
Q Consensus 194 G~I~~~~k~y~~A~~~~~~ai~~P 217 (437)
|.+|..+++|++|..+|+.|+..-
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999743
No 152
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=79.48 E-value=4.2 Score=36.07 Aligned_cols=67 Identities=16% Similarity=0.020 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 147 HSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 147 h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.-......+..++|..|+..+++-+..... ......-+|..|.++...++|.+|...|..++. .|..
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPF------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 334567788999999999999887653211 112345667889999999999999999999998 7875
No 153
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=79.40 E-value=5.4 Score=34.73 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=39.2
Q ss_pred chHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHhc-ccccc
Q psy9642 160 FKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLAL-----------KNYERALYFFEVIIT-TPALA 220 (437)
Q Consensus 160 y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~-----------k~y~~A~~~~~~ai~-~P~~~ 220 (437)
++.|+..+++-|.- ++. ...-+|..|.+|..+ ++|++|..+|..|+. .|...
T Consensus 62 ~~eAi~~le~AL~l--------dP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLI--------DPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHH--------CTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHh--------CcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 56777777776542 222 555678899999877 499999999999999 78764
No 154
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=79.37 E-value=10 Score=29.28 Aligned_cols=67 Identities=4% Similarity=0.013 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCC---chHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-ccccccC
Q psy9642 147 HSDLCQLCLLAQN---FKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPALAVS 222 (437)
Q Consensus 147 h~~l~~l~L~~~~---y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~~~s 222 (437)
+..+.+..+..++ ...|...+.+-+.. ++ +..+=.++.|.+++..++|.+|..+|+.++. .|. ...
T Consensus 9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 9 LAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------Cc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 3344444433333 67777777765542 22 2555667889999999999999999999998 677 544
Q ss_pred H
Q psy9642 223 H 223 (437)
Q Consensus 223 ~ 223 (437)
.
T Consensus 79 ~ 79 (93)
T 3bee_A 79 R 79 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 155
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=78.76 E-value=21 Score=35.20 Aligned_cols=112 Identities=13% Similarity=0.169 Sum_probs=76.0
Q ss_pred HHhcChhhhhhhHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhH
Q psy9642 90 LNMCNPDQIRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDV 169 (437)
Q Consensus 90 l~~fd~~Qir~a~~~~~~l~~~~~~~~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~ 169 (437)
+...++.+..-.+..+..++. .....+..-.++..+..++.. +|.. ...+..+..++...++|..|+..+.+
T Consensus 13 ~~~~~~~~~~~~a~~~~~~g~----~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 84 (537)
T 3fp2_A 13 LKGLSPSQRQAYAVQLKNRGN----HFFTAKNFNEAIKYYQYAIEL-DPNE---PVFYSNISACYISTGDLEKVIEFTTK 84 (537)
T ss_dssp HTTSCHHHHHHHHHHHHHHHH----HHHHTTCCC-CHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHH----HHHHhccHHHHHHHHHHHHhh-CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444333445555433 334467777899999988765 4433 35788889999999999999999988
Q ss_pred hhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 170 DITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 170 ~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
-+.. . + +....++..|.++...++|.+|...|. ++. .|..
T Consensus 85 al~~-~-------p-~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~ 125 (537)
T 3fp2_A 85 ALEI-K-------P-DHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDF 125 (537)
T ss_dssp HHHH-C-------T-TCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----
T ss_pred HHhc-C-------C-chHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCC
Confidence 7652 1 1 245677889999999999999999996 554 5543
No 156
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=78.37 E-value=2.3 Score=33.52 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=41.0
Q ss_pred hCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 157 AQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 157 ~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.++|..|++.+.+-+.. ..+..+....++.-|.++..+++|++|..+|+.++. .|..
T Consensus 3 ~g~~~~A~~~~~~al~~------~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS------GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp ----CCCHHHHHHHHSS------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHc------CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 35667777776665431 112345778889999999999999999999999998 6765
No 157
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=78.32 E-value=8.7 Score=36.55 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=61.4
Q ss_pred HhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHH
Q psy9642 116 VMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGM 195 (437)
Q Consensus 116 ~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~ 195 (437)
+...+..-.++..+..++.. +|.. ...+..+..++...+.+..|+..+.+-+.. .+ +....++.-|.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p-~~~~~~~~l~~ 177 (388)
T 1w3b_A 111 LVAAGDMEGAVQAYVSALQY-NPDL---YCVRSDLGNLLKALGRLEEAKACYLKAIET--------QP-NFAVAWSNLGC 177 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHH-CTTC---THHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CT-TCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC-CCHHHHHHHHH
Confidence 33456666677777776643 4432 235666777788888888888877765542 11 23445567788
Q ss_pred HHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 196 IYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 196 I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
++...++|.+|..+|+.++. .|..
T Consensus 178 ~~~~~g~~~~A~~~~~~al~~~p~~ 202 (388)
T 1w3b_A 178 VFNAQGEIWLAIHHFEKAVTLDPNF 202 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 88888999999999999988 5643
No 158
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=78.13 E-value=18 Score=27.71 Aligned_cols=39 Identities=8% Similarity=0.081 Sum_probs=34.8
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEec
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINK 358 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~ 358 (437)
...++..+||+.++++ ...+-..|..|...|.|...-+.
T Consensus 32 ~~~~s~~ela~~l~is-~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 32 RGGMRVSEIARELDLS-ARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEEeec
Confidence 4579999999999998 78999999999999999877664
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=78.01 E-value=5.1 Score=34.53 Aligned_cols=74 Identities=8% Similarity=-0.025 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCC-------hHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFD-------TKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TP 217 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~-------~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P 217 (437)
.+..+...++..++|..|+....+-+........... .......++..|.++...++|.+|..+|..++. .|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3556778889999999999998887653211110000 000246778889999999999999999999998 55
Q ss_pred cc
Q psy9642 218 AL 219 (437)
Q Consensus 218 ~~ 219 (437)
..
T Consensus 120 ~~ 121 (198)
T 2fbn_A 120 NN 121 (198)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 160
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=77.80 E-value=6.9 Score=38.43 Aligned_cols=87 Identities=11% Similarity=0.128 Sum_probs=68.0
Q ss_pred hhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 117 MDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 117 ~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
...+..-.++..+..++.. +|+ ...+..+..+++..++|..|+..+++-+.. . + +....++..|.+
T Consensus 17 ~~~g~~~~A~~~~~~al~~-~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-------p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 17 FRNKKYDDAIKYYNWALEL-KED----PVFYSNLSACYVSVGDLKKVVEMSTKALEL-K-------P-DYSKVLLRRASA 82 (514)
T ss_dssp HHTSCHHHHHHHHHHHHHH-CCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-------S-CCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhc-Ccc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-C-------h-HHHHHHHHHHHH
Confidence 3355666777888877765 353 457888899999999999999999887652 1 1 244667889999
Q ss_pred HHHHhhHHHHHHHHHHHhc-cc
Q psy9642 197 YLALKNYERALYFFEVIIT-TP 217 (437)
Q Consensus 197 ~~~~k~y~~A~~~~~~ai~-~P 217 (437)
+..+++|.+|..+|..++. .|
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~ 104 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD 104 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS
T ss_pred HHHHhhHHHHHHHHHHHHhcCC
Confidence 9999999999999999998 44
No 161
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=77.55 E-value=7.3 Score=39.89 Aligned_cols=61 Identities=7% Similarity=-0.288 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHH---hhHHHHHHHHHHHhc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLAL---KNYERALYFFEVIIT 215 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~---k~y~~A~~~~~~ai~ 215 (437)
.+..+..++...+++..|+..+.+-+.. .+ +....++.-|.++..+ +++++|..+|+.++.
T Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 93 IALWLGHALEDAGQAEAAAAAYTRAHQL--------LP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 3444444445555555554444443321 01 1122334445555555 555555555555554
No 162
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=77.44 E-value=9.1 Score=34.80 Aligned_cols=87 Identities=8% Similarity=-0.098 Sum_probs=62.0
Q ss_pred CCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHH
Q psy9642 120 KTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLA 199 (437)
Q Consensus 120 ~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~ 199 (437)
+....++..+..++.. +|. ....+..+..++...+++..|+..+.+-+.. . + .....++..|.++..
T Consensus 35 ~~~~~A~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-------~-~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 35 ANLAEAALAFEAVCQA-APE---REEAWRSLGLTQAENEKDGLAIIALNHARML-D-------P-KDIAVHAALAVSHTN 101 (327)
T ss_dssp TCHHHHHHHHHHHHHH-CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-------c-CCHHHHHHHHHHHHH
Confidence 3334455556665544 332 2335667788999999999999998886653 1 1 134566778999999
Q ss_pred HhhHHHHHHHHHHHhc-cccc
Q psy9642 200 LKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 200 ~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.++|.+|..+|..++. .|..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~ 122 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQY 122 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTT
T ss_pred cCCHHHHHHHHHHHHHhCCcc
Confidence 9999999999999998 5654
No 163
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=77.41 E-value=6.7 Score=42.41 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=71.1
Q ss_pred HHhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHH
Q psy9642 115 TVMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGG 194 (437)
Q Consensus 115 ~~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G 194 (437)
.+.+.++.-.++..++.|+. ++|.. ...|..+..++...+++..|+....+-+.- . + +....++..|
T Consensus 52 ~l~~~g~~~eA~~~~~~Al~-l~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-~-------P-~~~~a~~~Lg 118 (723)
T 4gyw_A 52 VLQQQGKLQEALMHYKEAIR-ISPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQI-N-------P-AFADAHSNLA 118 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH-hCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-------C-CCHHHHHHHH
Confidence 33445666678888888875 45542 346888899999999999999998887652 1 2 2456678889
Q ss_pred HHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 195 MIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 195 ~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.++..+++|++|..+|+.++. .|..
T Consensus 119 ~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 119 SIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998 7764
No 164
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=76.90 E-value=36 Score=31.53 Aligned_cols=87 Identities=8% Similarity=0.002 Sum_probs=63.4
Q ss_pred CCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHH
Q psy9642 120 KTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLA 199 (437)
Q Consensus 120 ~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~ 199 (437)
+..-.++..+..++.. .|.. ...+..+..++...+.|..|...+.+-+.. . + +....++..|.++..
T Consensus 180 ~~~~eA~~~~~~~l~~-~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~-------p-~~~~~l~~l~~~~~~ 246 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADK-CSPT---LLLLNGQAACHMAQGRWEAAEGVLQEALDK-D-------S-GHPETLINLVVLSQH 246 (291)
T ss_dssp THHHHHHHHHHHHHHH-SCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-------C-CCHHHHHHHHHHHHH
Confidence 4445567778887776 4432 336777888999999999999999886652 1 1 133345677889999
Q ss_pred HhhHHH-HHHHHHHHhc-cccc
Q psy9642 200 LKNYER-ALYFFEVIIT-TPAL 219 (437)
Q Consensus 200 ~k~y~~-A~~~~~~ai~-~P~~ 219 (437)
.+++.+ |.++++.++. .|..
T Consensus 247 ~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 247 LGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTC
T ss_pred cCCCHHHHHHHHHHHHHhCCCC
Confidence 999976 5789999997 7765
No 165
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=75.51 E-value=5.6 Score=30.34 Aligned_cols=43 Identities=7% Similarity=0.060 Sum_probs=36.8
Q ss_pred HHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE
Q psy9642 311 NIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYA 354 (437)
Q Consensus 311 ~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A 354 (437)
.|+.+-+..-++++++||+.++++ +.-++..|..+.+.|.|.-
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS-~~TIRrdL~~Le~~G~l~R 48 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTP-QPMINAMLQQLESMGKAVR 48 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCC-HHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEE
Confidence 355555667899999999999998 8999999999999998744
No 166
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=75.48 E-value=7.8 Score=36.90 Aligned_cols=60 Identities=10% Similarity=0.169 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q psy9642 147 HSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT 215 (437)
Q Consensus 147 h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~ 215 (437)
+..+..+++..+++..|..+...-+.. + ......++.-|.++...++|.+|..+|+.++.
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~-~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 95 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQ-N--------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-C--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-C--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444555555555554444433321 0 01233344455555555555555555555554
No 167
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=75.36 E-value=8.2 Score=38.28 Aligned_cols=92 Identities=14% Similarity=0.105 Sum_probs=57.1
Q ss_pred HHHhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHH
Q psy9642 114 KTVMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYG 193 (437)
Q Consensus 114 ~~~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~ 193 (437)
......+..-.++..+..++... |.. ...+..+..++...++|..|+..+.+-+.. .+ . ....++.-
T Consensus 284 ~~~~~~~~~~~A~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~-------~-~~~~~~~l 350 (537)
T 3fp2_A 284 LTLADKENSQEFFKFFQKAVDLN-PEY---PPTYYHRGQMYFILQDYKNAKEDFQKAQSL-NP-------E-NVYPYIQL 350 (537)
T ss_dssp HHTCCSSCCHHHHHHHHHHHHHC-TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-------T-CSHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHhccC-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CC-------C-CHHHHHHH
Confidence 33444566666777777766543 322 234666777777788888887777765542 11 1 12345566
Q ss_pred HHHHHHHhhHHHHHHHHHHHhc-ccc
Q psy9642 194 GMIYLALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 194 G~I~~~~k~y~~A~~~~~~ai~-~P~ 218 (437)
|.++...++|.+|..+|..++. .|.
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7777777777777777777776 454
No 168
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=75.31 E-value=11 Score=37.97 Aligned_cols=88 Identities=13% Similarity=-0.005 Sum_probs=53.5
Q ss_pred hhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 117 MDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 117 ~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
...+..-.++..+..++.. .|.. ...+..+...|...+++..|+.++++-+.. .+. ...........++..|..
T Consensus 418 ~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~ 491 (597)
T 2xpi_A 418 AIEGEHDQAISAYTTAARL-FQGT---HLPYLFLGMQHMQLGNILLANEYLQSSYAL-FQY-DPLLLNELGVVAFNKSDM 491 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHT-TTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCC-CHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHHh-Cccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-ChHHHHHHHHHHHHhCCH
Confidence 3355666677788777654 3322 234566788888999999998888776532 211 111122344555566666
Q ss_pred HHHHhhHHHHHHHH
Q psy9642 197 YLALKNYERALYFF 210 (437)
Q Consensus 197 ~~~~k~y~~A~~~~ 210 (437)
--+.+-|.+|.+..
T Consensus 492 ~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 492 QTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 66677777776654
No 169
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=75.25 E-value=6.8 Score=29.79 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=31.6
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEE
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATI 356 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~I 356 (437)
-.+++.+||+.+|++ +.-|...|..+...|.|.-.-
T Consensus 23 ~~psv~EIa~~lgvS-~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 23 APVKTRDIADAAGLS-IYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEES
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCcEEecC
Confidence 459999999999996 788999999999999986543
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=75.23 E-value=11 Score=32.69 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCC---CCCh-HhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGP---QFDT-KYFLQYFYYGGMIYLALKNYERALYFFEVIITT 216 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~---~~~~-~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~~ 216 (437)
.+......+...++|..|+..-++-|.. ++... .+.. ......++..|.++..+++|++|..+|..|+..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l-~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI-SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5666777888899999999888887653 22210 0111 123347889999999999999999999999874
No 171
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=74.83 E-value=6.7 Score=38.50 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=66.7
Q ss_pred HHHhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHH
Q psy9642 114 KTVMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYG 193 (437)
Q Consensus 114 ~~~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~ 193 (437)
......+..-.++..+..++... |.. ...+..+..++...+++..|+..+.+-+...... .. .......++..
T Consensus 346 ~~~~~~~~~~~A~~~~~~~~~~~-~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~--~~~~~~~~~~l 418 (514)
T 2gw1_A 346 CLAYRENKFDDCETLFSEAKRKF-PEA---PEVPNFFAEILTDKNDFDKALKQYDLAIELENKL-DG--IYVGIAPLVGK 418 (514)
T ss_dssp HHTTTTTCHHHHHHHHHHHHHHS-TTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-SS--CSSCSHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHc-ccC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc-ch--HHHHHHHHHHH
Confidence 34444566667788888877653 332 2367788888999999999988888765533322 11 11123456677
Q ss_pred HHHHHH---HhhHHHHHHHHHHHhc-ccc
Q psy9642 194 GMIYLA---LKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 194 G~I~~~---~k~y~~A~~~~~~ai~-~P~ 218 (437)
|.++.. .++|.+|..+|..++. .|.
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence 888888 8899999999998887 554
No 172
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=74.66 E-value=43 Score=31.40 Aligned_cols=100 Identities=10% Similarity=-0.026 Sum_probs=67.3
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcc--hhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQ--LTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~--lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
.+.+-.++..+..++......+.. ....+..+..++...++|..|+....+-+...... ...........++.-|.+
T Consensus 66 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 66 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ-HLEQLPMHEFLVRIRAQL 144 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCTTSTHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-ccccCcHHHHHHHHHHHH
Confidence 445556677777777654333322 23345677888999999999999888765432221 111112355566678999
Q ss_pred HHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 197 YLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 197 ~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
+...++|++|..+|..++. .|..
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999998 5543
No 173
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=74.58 E-value=53 Score=30.28 Aligned_cols=136 Identities=12% Similarity=0.055 Sum_probs=88.2
Q ss_pred ccHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHhCCCC--cchhhHHHHHHHHH
Q psy9642 77 EYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQTSD--SQLTSLHSDLCQLC 154 (437)
Q Consensus 77 ~~~~~~~~~~~~fl~~fd~~Qir~a~~~~~~l~~~~~~~~~~~~~~~~~i~~l~~ai~rl~~~~--~~lT~~h~~l~~l~ 154 (437)
.+....+.+.+........ .+-+...+..+... ... +.+-.++..++.|+......+ ......+..+..++
T Consensus 93 ~~A~~~~~~Al~l~~~~g~--~~~~a~~~~~lg~~----~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 165 (307)
T 2ifu_A 93 PEAVQYIEKASVMYVENGT--PDTAAMALDRAGKL----MEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLL 165 (307)
T ss_dssp GGGHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHH----HTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHH----HHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 3445566666665543221 11222344443333 333 666778889998887664332 22345677888999
Q ss_pred HHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccccccC
Q psy9642 155 LLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVS 222 (437)
Q Consensus 155 L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~~P~~~~s 222 (437)
...++|..|+..+.+-+....... .......+++-.|.++..+++|.+|..+|+.++..|....+
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~ 230 (307)
T 2ifu_A 166 VRQQKFDEAAASLQKEKSMYKEME---NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGS 230 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTS
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999888665322211 12345567778888999999999999999999955654433
No 174
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=74.42 E-value=21 Score=27.11 Aligned_cols=49 Identities=8% Similarity=-0.014 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEec
Q psy9642 309 KNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINK 358 (437)
Q Consensus 309 r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~ 358 (437)
+..|...-.....++..+||+.++++ ...+-..|..|...|.|...-+.
T Consensus 18 ~~~iL~~L~~~~~~~~~ela~~l~is-~~tvs~~l~~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 18 RLGIMIFLLPRRKAPFSQIQKVLDLT-PGNLDSHIRVLERNGLVKTYKVI 66 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEecC
Confidence 34443322234679999999999998 78899999999999999876643
No 175
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=74.35 E-value=6.2 Score=29.69 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=32.0
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEE
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYAT 355 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~ 355 (437)
...++.++||+.+|++ ...+...|..|...|.|...
T Consensus 12 ~~~~s~~eLa~~lgvs-~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 12 HNGGKTAEIAEALAVT-DYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp SCCCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEe
Confidence 3569999999999997 78999999999999999754
No 176
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=73.61 E-value=11 Score=36.89 Aligned_cols=94 Identities=12% Similarity=0.136 Sum_probs=57.1
Q ss_pred hhhCCCCcchHHHHHHHHHhCCCCcc-hhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHH
Q psy9642 117 MDLKTPQRGIPLIQTAIKKIQTSDSQ-LTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGM 195 (437)
Q Consensus 117 ~~~~~~~~~i~~l~~ai~rl~~~~~~-lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~ 195 (437)
...+....++..++.|+. ++|.... ...+-..+..+....+.+..|...+.+-+.. . + +....++..|.
T Consensus 186 ~~~~~~~~al~~~~~al~-l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~-------~-~~~~~~~~lg~ 255 (472)
T 4g1t_A 186 DNWPPSQNAIDPLRQAIR-LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-A-------P-GVTDVLRSAAK 255 (472)
T ss_dssp HHSCCCCCTHHHHHHHHH-HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-C-------S-SCHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhh-cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-C-------c-cHHHHHHHHHH
Confidence 345566678888888864 4554322 1212222223334456788888887765442 1 1 13345567899
Q ss_pred HHHHHhhHHHHHHHHHHHhc-ccccc
Q psy9642 196 IYLALKNYERALYFFEVIIT-TPALA 220 (437)
Q Consensus 196 I~~~~k~y~~A~~~~~~ai~-~P~~~ 220 (437)
++...++|.+|..+|..++. .|...
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~p~~~ 281 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYIPNNA 281 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHcCchHHHHHHHHHHHHhCCChH
Confidence 99999999999999999998 78753
No 177
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=73.44 E-value=6.4 Score=38.24 Aligned_cols=46 Identities=4% Similarity=0.077 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc----cccHHHHHHHhCCCChHHHHHHHH
Q psy9642 299 LTKQIVASLYKNNIKRLTKTFL----TLSLADVASRVQLGTPVQAEIYIL 344 (437)
Q Consensus 299 Lv~~l~~~v~r~~I~~l~k~Ys----~IsL~dIa~~l~L~~~~eaE~~l~ 344 (437)
++......++...++.++++|. +++++++++.|+.++++|++.++.
T Consensus 198 lle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 198 FLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp HHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 5566677899999999999995 899999999999998899887774
No 178
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=73.24 E-value=8.3 Score=38.85 Aligned_cols=67 Identities=10% Similarity=0.039 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHHHhCCc-hHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-ccc
Q psy9642 143 LTSLHSDLCQLCLLAQNF-KPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPA 218 (437)
Q Consensus 143 lT~~h~~l~~l~L~~~~y-~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~ 218 (437)
-...+..+.+.+...++| ..|+..+.+-+.. . + +....++.-|.++...++|.+|..+|+.++. .|.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-~-------p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 169 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-E-------P-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-C-------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 344777888999999999 9999998887653 1 1 2456778899999999999999999999998 554
No 179
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=73.01 E-value=63 Score=30.41 Aligned_cols=133 Identities=9% Similarity=0.012 Sum_probs=83.8
Q ss_pred cHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHhCCC--CcchhhHHHHHHHHHH
Q psy9642 78 YQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQTS--DSQLTSLHSDLCQLCL 155 (437)
Q Consensus 78 ~~~~~~~~~~~fl~~fd~~Qir~a~~~~~~l~~~~~~~~~~~~~~~~~i~~l~~ai~rl~~~--~~~lT~~h~~l~~l~L 155 (437)
+....+.++.......+.. ...+..+..++. .....+..-.++..+..++...... .......+..+..++.
T Consensus 104 ~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 104 KAMQYHKHDLTLAKSMNDR--LGEAKSSGNLGN----TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCc--hHHHHHHHHHHH----HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 3455666666655443211 111223333332 3333555566777777776654321 2334557778888999
Q ss_pred HhCC-----------------chHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cc
Q psy9642 156 LAQN-----------------FKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TP 217 (437)
Q Consensus 156 ~~~~-----------------y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P 217 (437)
..++ |..|+....+-+...... -+.......++..|.++...++|++|..+|..++. .|
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 9999 888888877654422111 12345677888999999999999999999999998 55
Q ss_pred cc
Q psy9642 218 AL 219 (437)
Q Consensus 218 ~~ 219 (437)
..
T Consensus 255 ~~ 256 (411)
T 4a1s_A 255 EF 256 (411)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 180
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=72.91 E-value=6.6 Score=32.88 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=33.4
Q ss_pred hHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 183 TKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 183 ~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
+...-.|.||-|.-++.+++|.+|.++++.++. -|..
T Consensus 70 p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 70 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 456788999999999999999999999999999 6865
No 181
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=72.43 E-value=7.1 Score=37.36 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCC-------hHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-c
Q psy9642 145 SLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFD-------TKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-T 216 (437)
Q Consensus 145 ~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~-------~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~ 216 (437)
..+..+...+...++|..|+....+-+..... ...+. .......++..|.++..+++|.+|..+|..++. .
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEY-ESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc-cccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 35677888999999999999998887653221 11111 111367888899999999999999999999998 6
Q ss_pred ccc
Q psy9642 217 PAL 219 (437)
Q Consensus 217 P~~ 219 (437)
|..
T Consensus 227 p~~ 229 (336)
T 1p5q_A 227 SNN 229 (336)
T ss_dssp TTC
T ss_pred CCc
Confidence 654
No 182
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=72.20 E-value=17 Score=35.42 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChH-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-ccccccCH
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTK-YFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPALAVSH 223 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~-~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~~~s~ 223 (437)
.+..+..++...++|..|+....+-+.. . .++. ....|+.|+++.....++|.+|..+|..++. .|......
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~ 409 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFSK-E-----LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE 409 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHS-C-----CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHhc-C-----CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH
Confidence 4567788999999999999888776531 1 1222 2345667777777788999999999999999 56543333
Q ss_pred HHHHHHHH
Q psy9642 224 IMLEGYKK 231 (437)
Q Consensus 224 i~vea~Kk 231 (437)
...+++++
T Consensus 410 ~~~~~l~~ 417 (472)
T 4g1t_A 410 KMKDKLQK 417 (472)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 183
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=72.18 E-value=9 Score=29.89 Aligned_cols=45 Identities=7% Similarity=0.105 Sum_probs=38.4
Q ss_pred HHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEE
Q psy9642 311 NIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATI 356 (437)
Q Consensus 311 ~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~I 356 (437)
.|+.+-+..-++++++||+.++++ +.-++..|..+.+.|.|.-.-
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS-~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTP-QPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCC-HHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEe
Confidence 355555667899999999999998 899999999999999887654
No 184
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=72.01 E-value=10 Score=36.15 Aligned_cols=65 Identities=9% Similarity=-0.103 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTP 217 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~~P 217 (437)
.+-...-+++..+.|..|+..+..-+.. -++.....-+|+.|+++..++++.+|..+|+.+...|
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 4555566999999999999888743221 1222234467899999999999999999999998754
No 185
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=71.79 E-value=4 Score=34.60 Aligned_cols=62 Identities=13% Similarity=-0.046 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cc
Q psy9642 147 HSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TP 217 (437)
Q Consensus 147 h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P 217 (437)
...+...++..+++..|+..+.+-+.. ..+....++.-|.++...++|++|..+|..++. .|
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~---------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE---------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH---------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 456678889999999998888775542 123566778889999999999999999999988 56
No 186
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=71.64 E-value=66 Score=30.04 Aligned_cols=95 Identities=14% Similarity=-0.029 Sum_probs=68.3
Q ss_pred hhCCCCcchHHHHHHHHHhCCCC----cchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHH
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSD----SQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYG 193 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~----~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~ 193 (437)
..+..-.++..+..++......+ ......+..+..++...+++..|...+.+-+.. +.. ..+......++..
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~---~~~~~~~~~~~~l 180 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-LSS---YQPQQQLQCLAML 180 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTT---SCGGGGHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hhc---cCcHHHHHHHHHH
Confidence 34555667777777776653222 234456777888999999999999988876543 221 1223355667788
Q ss_pred HHHHHHHhhHHHHHHHHHHHhcc
Q psy9642 194 GMIYLALKNYERALYFFEVIITT 216 (437)
Q Consensus 194 G~I~~~~k~y~~A~~~~~~ai~~ 216 (437)
|.++...++|.+|..+|+.+...
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999874
No 187
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=71.41 E-value=9.3 Score=38.60 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=65.2
Q ss_pred cchHHHHHHHHH----hCCC-CcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 124 RGIPLIQTAIKK----IQTS-DSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 124 ~~i~~l~~ai~r----l~~~-~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.++..+..++.. |.|+ +.+++ ....+..++...+.|..|+++..+-+.-.... -+-+..+.+.-++--|.+|.
T Consensus 316 eA~~~~~~~L~i~~~~lg~~Hp~~a~-~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~-lG~~Hp~~a~~l~nLa~~~~ 393 (433)
T 3qww_A 316 ELLEICELSQEKMSSVFEDSNVYMLH-MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH-YPVYSLNVASMWLKLGRLYM 393 (433)
T ss_dssp HHHHHHHHHHHHHTTTBCTTSHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-SCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccChhchHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHHH
Confidence 445566666554 3333 34444 44557788999999999999887755432221 12245668888889999999
Q ss_pred HHhhHHHHHHHHHHHhccc
Q psy9642 199 ALKNYERALYFFEVIITTP 217 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~~P 217 (437)
.+++|++|..+|+.|+..-
T Consensus 394 ~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 394 GLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHH
Confidence 9999999999999998753
No 188
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=71.00 E-value=9.2 Score=32.04 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=38.3
Q ss_pred HHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE---EEecC
Q psy9642 311 NIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYA---TINKK 359 (437)
Q Consensus 311 ~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A---~Id~~ 359 (437)
.|..+-+...+++.++||+.+|++ ...+...+.+|.+.|.|.. .+|+.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLS-PPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEecccChh
Confidence 344444445789999999999997 8899999999999999864 46653
No 189
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=69.94 E-value=60 Score=28.88 Aligned_cols=133 Identities=11% Similarity=0.034 Sum_probs=84.0
Q ss_pred cHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHhCCC--CcchhhHHHHHHHHHH
Q psy9642 78 YQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQTS--DSQLTSLHSDLCQLCL 155 (437)
Q Consensus 78 ~~~~~~~~~~~fl~~fd~~Qir~a~~~~~~l~~~~~~~~~~~~~~~~~i~~l~~ai~rl~~~--~~~lT~~h~~l~~l~L 155 (437)
+....+.++.......+... ..+..+..++ ......+..-.++..+..++...... +......+..+..++.
T Consensus 61 ~A~~~~~~al~~~~~~~~~~--~~~~~~~~l~----~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 61 KALEYHHHDLTLARTIGDQL--GEAKASGNLG----NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHH--HHHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccH--HHHHHHHHHH----HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 34456666666554322111 1122333333 33334556667788888877665433 2334456777888888
Q ss_pred HhCC--------------------chHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q psy9642 156 LAQN--------------------FKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT 215 (437)
Q Consensus 156 ~~~~--------------------y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~ 215 (437)
..++ |..|+..+.+-+...... -+.......++.-|.++...++|.+|..+|..++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL---GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888 888888877654432221 12445677788899999999999999999999998
Q ss_pred -cccc
Q psy9642 216 -TPAL 219 (437)
Q Consensus 216 -~P~~ 219 (437)
.|..
T Consensus 212 ~~~~~ 216 (338)
T 3ro2_A 212 IAKEF 216 (338)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 4543
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=69.07 E-value=4.9 Score=29.13 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=30.6
Q ss_pred hHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 183 TKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 183 ~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
+......++..|.++...++|.+|..+|..++. .|..
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 42 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 344667788899999999999999999999998 5643
No 191
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=68.79 E-value=10 Score=32.37 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=37.4
Q ss_pred HHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceE---EEEecC
Q psy9642 312 IKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIY---ATINKK 359 (437)
Q Consensus 312 I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~---A~Id~~ 359 (437)
|..+-+...+++.++||+.+|++ ...+-..+..|.+.|.|. +.+|+.
T Consensus 15 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 15 ILQVLQENGRLTNVELSERVALS-PSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEeeecccCChH
Confidence 33333445789999999999997 789999999999999986 456653
No 192
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=68.67 E-value=9.9 Score=32.08 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=38.0
Q ss_pred HHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE---EEecC
Q psy9642 312 IKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYA---TINKK 359 (437)
Q Consensus 312 I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A---~Id~~ 359 (437)
|..+-+.-.+++.++||+.+|++ ...+...+.+|.+.|.|.. .+|+.
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVS-PETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 33333445789999999999997 8899999999999999864 56764
No 193
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=68.18 E-value=12 Score=32.07 Aligned_cols=48 Identities=29% Similarity=0.270 Sum_probs=39.4
Q ss_pred HHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceE---EEEecC
Q psy9642 311 NIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIY---ATINKK 359 (437)
Q Consensus 311 ~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~---A~Id~~ 359 (437)
.|..+-+.-.++|.++||+.+|++ +..+...+.+|.++|.|. |.+|+.
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s-~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLS-TTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCC-HHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 444444555789999999999998 889999999999999975 677764
No 194
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=67.76 E-value=11 Score=31.77 Aligned_cols=47 Identities=11% Similarity=0.026 Sum_probs=37.2
Q ss_pred HHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE---EEecC
Q psy9642 312 IKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYA---TINKK 359 (437)
Q Consensus 312 I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A---~Id~~ 359 (437)
|..+-+.-.++|.++||+.+|++ ...+...+.+|.++|.|.. .+|+.
T Consensus 14 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 14 LVKILSENSRLTYRELADILNTT-RQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHTTSC-HHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 33333445789999999999997 7899999999999999853 46653
No 195
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=67.14 E-value=25 Score=35.84 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=67.0
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+....++..++.|+. ++|.. ...+..+..++...++|..|+..+.+-+.. . + +....++.-|.++.
T Consensus 36 ~g~~~~A~~~~~~al~-~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-------p-~~~~~~~~la~~~~ 102 (568)
T 2vsy_A 36 MGDTTAGEMAVQRGLA-LHPGH---PEAVARLGRVRWTQQRHAEAAVLLQQASDA-A-------P-EHPGIALWLGHALE 102 (568)
T ss_dssp HTCHHHHHHHHHHHHT-TSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH-hCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-------C-CCHHHHHHHHHHHH
Confidence 4455567777777764 34432 446788899999999999999999887653 1 1 13556778899999
Q ss_pred HHhhHHHHHHHHHHHhc-cccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..++|++|.++|+.++. .|..
T Consensus 103 ~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 103 DAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998 6754
No 196
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=67.03 E-value=7.5 Score=30.04 Aligned_cols=33 Identities=6% Similarity=0.222 Sum_probs=30.8
Q ss_pred ccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEE
Q psy9642 322 LSLADVASRVQLGTPVQAEIYILKMISQNEIYAT 355 (437)
Q Consensus 322 IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~ 355 (437)
++..+||+.||++ ...+...|.+|..+|.|...
T Consensus 31 ~sa~eLAk~LgiS-k~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 31 ATAAQLTRQLNME-KREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp EEHHHHHHHSSSC-HHHHHHHHHHHHHHTSSEEC
T ss_pred CCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEeC
Confidence 9999999999998 78999999999999999764
No 197
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=66.78 E-value=13 Score=37.26 Aligned_cols=71 Identities=8% Similarity=-0.071 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTP 217 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~~P 217 (437)
....+..++...+.|..|+++..+-+.-.... -+-...+.+.-++--|.+|..+++|++|..+|+.|+..-
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~-lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIF-FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH-cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 44456778889999999988877654432221 122455688888999999999999999999999999743
No 198
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=66.76 E-value=44 Score=26.07 Aligned_cols=38 Identities=8% Similarity=-0.025 Sum_probs=33.5
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEe
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATIN 357 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id 357 (437)
-..++..+||+.++++ ...+-.+|..|...|.|...-+
T Consensus 32 ~~~~~~~ela~~l~is-~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 32 RADQSASSLATRLPVS-RQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HSCBCHHHHHHHSSSC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeeEEec
Confidence 3569999999999998 7889999999999999987655
No 199
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=66.21 E-value=12 Score=32.50 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=35.5
Q ss_pred HhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceE---EEEecC
Q psy9642 317 KTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIY---ATINKK 359 (437)
Q Consensus 317 k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~---A~Id~~ 359 (437)
+.-.++|.++||+.+|++ ...+-..|.+|.++|.|. +.+|+.
T Consensus 27 ~~~~~~s~~eLA~~lglS-~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 27 KKDARLTISELSEQLKKP-ESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 344689999999999998 789999999999999985 456654
No 200
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=65.98 E-value=49 Score=26.45 Aligned_cols=42 Identities=5% Similarity=0.027 Sum_probs=36.5
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
...++.++||+.++++ ...+-..|.+|...|.|.-..+..++
T Consensus 46 ~~~~~~~~la~~l~~~-~~tvs~~l~~L~~~gli~r~~~~~d~ 87 (138)
T 1jgs_A 46 AACITPVELKKVLSVD-LGALTRMLDRLVCKGWVERLPNPNDK 87 (138)
T ss_dssp HSSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECTTCS
T ss_pred cCCCCHHHHHHHHCCC-hHHHHHHHHHHHHCCCEEecCCcccC
Confidence 4578999999999997 78899999999999999888776554
No 201
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=65.48 E-value=15 Score=35.88 Aligned_cols=74 Identities=11% Similarity=0.044 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCC-------CCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEG-------PQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TP 217 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~-------~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P 217 (437)
.+..+...++..++|..|+....+-+....... ..-........++..|.++..+++|.+|..+|+.++. .|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 466677889999999999998887665221100 0001234667788899999999999999999999998 56
Q ss_pred cc
Q psy9642 218 AL 219 (437)
Q Consensus 218 ~~ 219 (437)
..
T Consensus 305 ~~ 306 (370)
T 1ihg_A 305 SN 306 (370)
T ss_dssp TC
T ss_pred hh
Confidence 43
No 202
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=65.38 E-value=7.2 Score=37.19 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc
Q psy9642 144 TSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTP 217 (437)
Q Consensus 144 T~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~~P 217 (437)
+-+++.+..+....+.|..|...++.-+. ..+.+. -.|-.|.+++..++|.+|..+|+.+...|
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 44677888999999999999888876543 134444 67899999999999999999999877765
No 203
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=65.31 E-value=1e+02 Score=30.50 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc
Q psy9642 144 TSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPA 218 (437)
Q Consensus 144 T~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~~P~ 218 (437)
|.+-..++.+.+..++|..|++++.+-..+.... + +....+.-+-..-.+|...+|+.+|...|..|-+++.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-d--d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKL-D--DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-S--CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-c--cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 3456689999999999999999988765544321 1 3567888888999999999999999999999877543
No 204
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=64.21 E-value=16 Score=30.93 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=33.1
Q ss_pred hHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 183 TKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 183 ~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
+...=.|.||-++-++.+++|.+|.++.+.++. -|.+
T Consensus 74 ~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 74 ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 455778899999999999999999999999999 6875
No 205
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=64.08 E-value=20 Score=29.25 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=44.2
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEccCCCCCCchHHHHHHHH
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDNPQRFNNPLTFAQIES 383 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~e~~~~l~~ 383 (437)
..++.++||+.++++ ..-+++++..|...|.|...=. ++|-.....+++..+-.++...++.
T Consensus 25 ~~~s~~ela~~~~i~-~~~v~~il~~L~~~Glv~~~~g-~~ggy~L~~~~~~itl~di~~~~e~ 86 (129)
T 2y75_A 25 GPTSLKSIAQTNNLS-EHYLEQLVSPLRNAGLVKSIRG-AYGGYVLGSEPDAITAGDIIRVLEG 86 (129)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHHHHHHTTSEEEC-----CCEEESSCGGGCBHHHHHHHHHC
T ss_pred CcCCHHHHHHHHCcC-HHHHHHHHHHHHHCCceEecCC-CCCceEeCCCHHHCcHHHHHHHHcC
Confidence 469999999999998 8999999999999999865432 2344555555555554555555554
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=63.44 E-value=5.8 Score=30.35 Aligned_cols=34 Identities=26% Similarity=0.178 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 186 FLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 186 ~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
....+|.-|.++...++|.+|..+|+.++. .|..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 40 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDY 40 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 456678899999999999999999999998 6764
No 207
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=63.01 E-value=16 Score=30.62 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=35.2
Q ss_pred HhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceE---EEEecC
Q psy9642 317 KTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIY---ATINKK 359 (437)
Q Consensus 317 k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~---A~Id~~ 359 (437)
..-.+++.++||+.+|++ ...+-..+.+|.+.|.|. +.+|+.
T Consensus 17 ~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 17 AADGRATLSELATRAGLS-VSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 445789999999999997 789999999999999984 445653
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=62.53 E-value=1.2e+02 Score=29.93 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 144 TSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 144 T~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.-.|..+.-..+..+++..|+..+++-+.- ++ .. ..+...|.++...++|++|.++|+.|+. .|..
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~L--------n~-s~-~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDL--------EM-SW-LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CC-CH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CC-CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 335555656667789999999999987763 12 13 3447889999999999999999999999 7864
No 209
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=62.32 E-value=21 Score=30.77 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=48.1
Q ss_pred cccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEccCCCCCCchHHHHHHHH
Q psy9642 321 TLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDNPQRFNNPLTFAQIES 383 (437)
Q Consensus 321 ~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~e~~~~l~~ 383 (437)
.++.++||+.++++ +.-+++++.++...|-|..+=- ++|-.....+++..+-.++...++.
T Consensus 44 ~~s~~eIA~~~~i~-~~~l~kil~~L~~aGlv~s~rG-~~GGy~Lar~p~eItL~dVi~avEg 104 (159)
T 3lwf_A 44 PISLRSIAQDKNLS-EHYLEQLIGPLRNAGIVKSIRG-AHGGYVLNGDPEKITAGDIIRTLEG 104 (159)
T ss_dssp CBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECS-TTCEEEECSCTTTCBHHHHHHHHSC
T ss_pred CcCHHHHHHHHCcC-HHHHHHHHHHHHHCCeEEEecC-CCCceEecCCHHHCCHHHHHHHHcC
Confidence 59999999999998 8999999999999999887633 3455667777776666666666654
No 210
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=61.57 E-value=29 Score=26.23 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=33.2
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEe
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATIN 357 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id 357 (437)
-..++..+||+.++++ ...+-.+|..|...|.|...-+
T Consensus 36 ~~~~s~~ela~~l~is-~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 36 SPGTSAGELTRITGLS-ASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp CCSEEHHHHHHHHCCC-HHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEec
Confidence 3469999999999997 7889999999999999977654
No 211
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=61.49 E-value=13 Score=37.26 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCC-------hHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-c
Q psy9642 145 SLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFD-------TKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-T 216 (437)
Q Consensus 145 ~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~-------~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~ 216 (437)
..+..+...+...++|..|+....+-+..... ...++ .......++..|.++..+++|.+|..+|..|+. .
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 35667788899999999999998887653221 11111 112367888899999999999999999999998 5
Q ss_pred ccc
Q psy9642 217 PAL 219 (437)
Q Consensus 217 P~~ 219 (437)
|..
T Consensus 348 p~~ 350 (457)
T 1kt0_A 348 SAN 350 (457)
T ss_dssp TTC
T ss_pred Ccc
Confidence 654
No 212
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=61.34 E-value=40 Score=26.96 Aligned_cols=42 Identities=7% Similarity=0.056 Sum_probs=36.4
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCE
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGM 362 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~ 362 (437)
..++.++||+.++++ ...+-..|..|...|.|.-.-+..++-
T Consensus 51 ~~~t~~ela~~l~~~-~~tvs~~l~~L~~~glv~r~~~~~d~R 92 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMD-AATIKGVVERLDKRGLIQRSADPDDGR 92 (140)
T ss_dssp SSBCHHHHHHHTTCC-HHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeeCCCCCCC
Confidence 479999999999998 788999999999999998887765543
No 213
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=60.66 E-value=25 Score=29.54 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=49.7
Q ss_pred cccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEccCCCCCCchHHHHHHHHHH
Q psy9642 321 TLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDNPQRFNNPLTFAQIESNI 385 (437)
Q Consensus 321 ~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~e~~~~l~~~i 385 (437)
.++.++||+.++++ +.-+++++.++...|.|..+= -++|-.....+++..+-.++...++..+
T Consensus 28 ~~s~~~IA~~~~i~-~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar~p~~Itl~dV~~aveg~~ 90 (143)
T 3t8r_A 28 CISLKSIAEENNLS-DLYLEQLVGPLRNAGLIRSVR-GAKGGYQLRVPAEEISAGDIIRLLEGPI 90 (143)
T ss_dssp CEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEECS-SSSSEEEESSCGGGCBHHHHHHHHHCC-
T ss_pred CcCHHHHHHHHCcC-HHHHHHHHHHHHHCCEEEecC-CCCCCeeecCCcccCCHHHHHHHhCCCC
Confidence 59999999999998 899999999999999987642 2346667777777666667777777544
No 214
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=60.66 E-value=39 Score=27.13 Aligned_cols=44 Identities=7% Similarity=-0.099 Sum_probs=37.3
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEE
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMV 363 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v 363 (437)
...++.++||+.++++ ...+-..|.+|...|.|.-.-+..++-.
T Consensus 48 ~~~~t~~ela~~l~~s-~~~vs~~l~~Le~~glv~r~~~~~d~R~ 91 (142)
T 2fbi_A 48 QGEMESYQLANQACIL-RPSMTGVLARLERDGIVRRWKAPKDQRR 91 (142)
T ss_dssp HCSEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHCCC-HhHHHHHHHHHHHCCCEEeecCCCCCCe
Confidence 4579999999999997 7889999999999999988877655443
No 215
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=60.60 E-value=25 Score=31.40 Aligned_cols=80 Identities=18% Similarity=0.166 Sum_probs=56.7
Q ss_pred CCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHH----hCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHH
Q psy9642 120 KTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLL----AQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGM 195 (437)
Q Consensus 120 ~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~----~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~ 195 (437)
+....++..++.++. |.+ ...+..+..++.. .+++..|+..+.+-+.. ....-++.-|.
T Consensus 20 ~~~~~A~~~~~~a~~---~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----------~~~~a~~~lg~ 82 (273)
T 1ouv_A 20 KDFTQAKKYFEKACD---LKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----------NYSNGCHLLGN 82 (273)
T ss_dssp TCHHHHHHHHHHHHH---TTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---CCC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----------CCHHHHHHHHH
Confidence 344456666777665 221 1346667778888 88999998888776541 13455677888
Q ss_pred HHHH----HhhHHHHHHHHHHHhcc
Q psy9642 196 IYLA----LKNYERALYFFEVIITT 216 (437)
Q Consensus 196 I~~~----~k~y~~A~~~~~~ai~~ 216 (437)
++.. .++|.+|..+|+.++..
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDL 107 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHc
Confidence 8888 89999999999999875
No 216
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=59.95 E-value=30 Score=30.89 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=61.6
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHH----hCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLL----AQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGG 194 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~----~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G 194 (437)
.+.+..++..++.|+.. . -...+..+..++.. .+++..|+..+.+-+.. ....-++.-|
T Consensus 55 ~~~~~~A~~~~~~a~~~-~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----------~~~~a~~~lg 117 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDL-N-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-----------KYAEGCASLG 117 (273)
T ss_dssp CCCHHHHHHHHHHHHHT-T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------TCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC-C-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-----------CCccHHHHHH
Confidence 45556677788877654 1 24466778888888 99999999988876542 1345567788
Q ss_pred HHHHH----HhhHHHHHHHHHHHhcc
Q psy9642 195 MIYLA----LKNYERALYFFEVIITT 216 (437)
Q Consensus 195 ~I~~~----~k~y~~A~~~~~~ai~~ 216 (437)
.++.. .+++++|..+|+.++..
T Consensus 118 ~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 118 GIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 89988 89999999999999984
No 217
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=59.79 E-value=22 Score=29.00 Aligned_cols=39 Identities=5% Similarity=0.050 Sum_probs=32.7
Q ss_pred HHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE
Q psy9642 315 LTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYA 354 (437)
Q Consensus 315 l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A 354 (437)
+...-..++.++||+.++++ ...+-..|..|...|.|.-
T Consensus 25 l~~~~~~~s~~ela~~l~is-~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 25 YNDSGEGAKINRIAKDLKIA-PSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp HHTTTSCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHhcCCCcCHHHHHHHhCCC-hHHHHHHHHHHHHCCCEEe
Confidence 33344679999999999998 7889999999999998764
No 218
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=59.36 E-value=27 Score=28.43 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=33.8
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
.-.++.++||+.++++ ...+-.+|.+|...|.|.-.-|..++
T Consensus 48 ~~~~t~~eLa~~l~~~-~~tvs~~l~~L~~~Glv~r~~~~~D~ 89 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLD-SGTLTPLLKKLEKKDYVVRTREEKDE 89 (140)
T ss_dssp TCEEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEC-----
T ss_pred cCCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCeEecCCCCCc
Confidence 4579999999999997 78999999999999999888766543
No 219
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=59.10 E-value=14 Score=31.16 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=36.8
Q ss_pred HHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceE---EEEec
Q psy9642 312 IKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIY---ATINK 358 (437)
Q Consensus 312 I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~---A~Id~ 358 (437)
|..+-+.-.+++.++||+.+|++ ...+-..+.+|.+.|.|. |.+|+
T Consensus 12 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~d~ 60 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKITGLA-ESTIHERIRKLRESGVIKKFTAIIDP 60 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHHCSC-HHHHHHHHHHHHHHTSSCCCCCCCCG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEEEECH
Confidence 33333445789999999999997 789999999999999984 45665
No 220
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=58.58 E-value=15 Score=32.04 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=36.9
Q ss_pred HHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceE---EEEec
Q psy9642 312 IKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIY---ATINK 358 (437)
Q Consensus 312 I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~---A~Id~ 358 (437)
|..+-+.-.+++.++||+.+|++ +..+-..+.+|.+.|.|. |.+|+
T Consensus 32 IL~~L~~~~~~s~~eLA~~lglS-~~tv~~rl~~L~~~G~I~~~~a~vd~ 80 (171)
T 2e1c_A 32 IIKILQNDGKAPLREISKITGLA-ESTIHERIRKLRESGVIKKFTAIIDP 80 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSSCCCCCCCCG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEeeeEEECH
Confidence 33333345799999999999997 889999999999999984 45665
No 221
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=58.57 E-value=12 Score=34.75 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHH
Q psy9642 126 IPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYER 205 (437)
Q Consensus 126 i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~ 205 (437)
..-+...+.+.-|.+ ...+..+...++..+++..|+..+.+-+.. . + +....++..|.++...+++++
T Consensus 102 ~~~l~~~l~~~lp~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~-------P-~~~~a~~~la~~~~~~g~~~~ 169 (287)
T 3qou_A 102 EEAIRALLDXVLPRE---EELXAQQAMQLMQESNYTDALPLLXDAWQL-S-------N-QNGEIGLLLAETLIALNRSED 169 (287)
T ss_dssp HHHHHHHHHHHSCCH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-T-------T-SCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCc---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-C-------C-cchhHHHHHHHHHHHCCCHHH
Confidence 334556666655432 236778889999999999999988886553 1 1 245667888999999999999
Q ss_pred HHHHHHHHhc-cc
Q psy9642 206 ALYFFEVIIT-TP 217 (437)
Q Consensus 206 A~~~~~~ai~-~P 217 (437)
|...|+.++. .|
T Consensus 170 A~~~l~~~~~~~p 182 (287)
T 3qou_A 170 AEAVLXTIPLQDQ 182 (287)
T ss_dssp HHHHHTTSCGGGC
T ss_pred HHHHHHhCchhhc
Confidence 9999999987 56
No 222
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=58.57 E-value=63 Score=25.99 Aligned_cols=43 Identities=5% Similarity=-0.044 Sum_probs=37.1
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCE
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGM 362 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~ 362 (437)
.-.++.++||+.++++ ...+-..|..|...|.|.-.-+..++-
T Consensus 45 ~~~~~~~~la~~l~~s-~~tvs~~l~~L~~~glv~r~~~~~d~r 87 (145)
T 2a61_A 45 EGPKRPGELSVLLGVA-KSTVTGLVKRLEADGYLTRTPDPADRR 87 (145)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCC-chhHHHHHHHHHHCCCeeecCCCCCCc
Confidence 4579999999999998 788999999999999999887765543
No 223
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=58.42 E-value=12 Score=31.66 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=46.7
Q ss_pred cccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEccCCCCCCchHHHHHHHH
Q psy9642 321 TLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDNPQRFNNPLTFAQIES 383 (437)
Q Consensus 321 ~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~e~~~~l~~ 383 (437)
.++.++||+.++++ +.-+++++..+...|.|..+=- .|-.....+++..+-.++...++.
T Consensus 30 ~~~~~~iA~~~~i~-~~~l~kil~~L~~~Glv~s~rG--~GGy~L~~~p~~Itl~dVi~a~e~ 89 (149)
T 1ylf_A 30 LCTSDYMAESVNTN-PVVIRKIMSYLKQAGFVYVNRG--PGGAGLLKDLHEITLLDVYHAVNV 89 (149)
T ss_dssp GCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEC-----CCEEESSCGGGCBHHHHHHHHCC
T ss_pred CcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEccC--CCceEeCCChhhCcHHHHHHHHcc
Confidence 58999999999998 8999999999999999876433 566667777776666677776655
No 224
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=58.37 E-value=13 Score=31.88 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 185 YFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 185 ~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..=.|.||-+.-++.++||.+|.++.+.++. -|.+
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 4556889999999999999999999999999 6765
No 225
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=58.05 E-value=59 Score=24.66 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=36.4
Q ss_pred HHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEec
Q psy9642 313 KRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINK 358 (437)
Q Consensus 313 ~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~ 358 (437)
..+...-..++..+||+.+|++ ..-+-.+|..|...|.|.-.-+.
T Consensus 28 ~~l~~~~~~~t~~ela~~l~is-~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 28 LKMVEIEKPITSEELADIFKLS-KTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp HHHHHHCSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEC-
T ss_pred HHHHHcCCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEeeccc
Confidence 3344335679999999999998 78899999999999999876654
No 226
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=57.91 E-value=52 Score=26.53 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=35.0
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
...++.++||+.++++ ...+-..|..|...|.|.-.-+..+
T Consensus 49 ~~~~~~~ela~~l~~~-~~tvs~~l~~L~~~gli~r~~~~~d 89 (142)
T 2bv6_A 49 ESPVNVKKVVTELALD-TGTVSPLLKRMEQVDLIKRERSEVD 89 (142)
T ss_dssp SSEEEHHHHHHHTTCC-TTTHHHHHHHHHHTTSEEEEECSSS
T ss_pred cCCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCEEeecCCCC
Confidence 3569999999999997 6788899999999999988776544
No 227
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=56.81 E-value=44 Score=26.94 Aligned_cols=42 Identities=12% Similarity=-0.025 Sum_probs=36.2
Q ss_pred hhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 318 TFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 318 ~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
....++.++||+.++++ ...+-..|..|...|.|.-.-+..+
T Consensus 49 ~~~~~t~~~la~~l~~s-~~~vs~~l~~L~~~glv~r~~~~~d 90 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVE-GPTLARLLDGLESQGLVRRLAVAED 90 (146)
T ss_dssp CSSCCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECCBTT
T ss_pred cCCCCCHHHHHHHhCCC-hhhHHHHHHHHHHCCCeeecCCCcc
Confidence 45679999999999998 7889999999999999988776543
No 228
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=56.77 E-value=11 Score=31.91 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=50.7
Q ss_pred HHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEccCCCCCCchHHHHHHHHH
Q psy9642 313 KRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDNPQRFNNPLTFAQIESN 384 (437)
Q Consensus 313 ~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~e~~~~l~~~ 384 (437)
.-|+..+.. +.++||+.++++ +.-+++++.+|...|-|..+=- .|-.....+++..+-.++...++..
T Consensus 16 ~~La~~~~~-s~~~IA~~~~i~-~~~l~kIl~~L~~aGlv~s~rG--~GGy~Lar~p~~Itl~dVi~aveg~ 83 (145)
T 1xd7_A 16 SLISMDEKT-SSEIIADSVNTN-PVVVRRMISLLKKADILTSRAG--VPGASLKKDPADISLLEVYRAVQKQ 83 (145)
T ss_dssp HHHHTCSCC-CHHHHHHHHTSC-HHHHHHHHHHHHHTTSEECCSS--SSSCEESSCGGGCBHHHHHHHHCC-
T ss_pred HHHHhCCCC-CHHHHHHHHCcC-HHHHHHHHHHHHHCCceEeecC--CCCceecCCHHHCCHHHHHHHHcCC
Confidence 334444446 999999999998 8999999999999999876543 5556777777766666777776543
No 229
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=56.66 E-value=31 Score=27.74 Aligned_cols=41 Identities=12% Similarity=0.055 Sum_probs=35.5
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
...++.++||+.++++ ...+-..|.+|...|.|.-.-+..+
T Consensus 43 ~~~~~~~ela~~l~is-~~~vs~~l~~L~~~gli~~~~~~~d 83 (142)
T 3bdd_A 43 DAPLHQLALQERLQID-RAAVTRHLKLLEESGYIIRKRNPDN 83 (142)
T ss_dssp HCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSS
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEecCCCCC
Confidence 4579999999999997 7889999999999999988776543
No 230
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=55.44 E-value=22 Score=27.05 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhccccHHHHHHHhCCCChH-HHHHHHHHhHHcCceEE
Q psy9642 309 KNNIKRLTKTFLTLSLADVASRVQLGTPV-QAEIYILKMISQNEIYA 354 (437)
Q Consensus 309 r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~-eaE~~l~~mI~~G~I~A 354 (437)
+..|..+-+.--..+..+||+.||++ .. .|...|..|-.+|.|..
T Consensus 13 ~~~IL~~Lk~~g~~ta~eiA~~Lgit-~~~aVr~hL~~Le~eGlV~~ 58 (79)
T 1xmk_A 13 KEKICDYLFNVSDSSALNLAKNIGLT-KARDINAVLIDMERQGDVYR 58 (79)
T ss_dssp HHHHHHHHHHTCCEEHHHHHHHHCGG-GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHcCCC-cHHHHHHHHHHHHHCCCEEe
Confidence 44455555666789999999999998 67 99999999999999973
No 231
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=55.08 E-value=16 Score=30.47 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=38.1
Q ss_pred HHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE---EEecC
Q psy9642 311 NIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYA---TINKK 359 (437)
Q Consensus 311 ~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A---~Id~~ 359 (437)
.|..+-+.-.+++.++||+.+|++ ...+-..+..|.+.|.|.. .+|+.
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIP-KATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSC-HHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 344444445689999999999997 8899999999999999865 56653
No 232
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=55.07 E-value=27 Score=32.21 Aligned_cols=115 Identities=13% Similarity=0.089 Sum_probs=69.7
Q ss_pred HHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHH
Q psy9642 84 SQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPA 163 (437)
Q Consensus 84 ~~~~~fl~~fd~~Qir~a~~~~~~l~~~~~~~~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~A 163 (437)
+.+..|+...-|... +.+..+ ...+...+.+-.++..++.++.. +|.. ...+..+.++++..+.+..|
T Consensus 103 ~~l~~~l~~~lp~~~----~~~~~~----a~~~~~~g~~~~A~~~~~~al~~-~P~~---~~a~~~la~~~~~~g~~~~A 170 (287)
T 3qou_A 103 EAIRALLDXVLPREE----ELXAQQ----AMQLMQESNYTDALPLLXDAWQL-SNQN---GEIGLLLAETLIALNRSEDA 170 (287)
T ss_dssp HHHHHHHHHHSCCHH----HHHHHH----HHHHHHTTCHHHHHHHHHHHHHH-TTSC---HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCCch----hhHHHH----HHHHHhCCCHHHHHHHHHHHHHh-CCcc---hhHHHHHHHHHHHCCCHHHH
Confidence 355566655444332 222222 23344456667788888887654 5543 34688899999999999999
Q ss_pred HhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 164 LEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 164 l~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
+..+++-+.. .+ +........++.+...+++.+|...|+.++. .|..
T Consensus 171 ~~~l~~~~~~--------~p-~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~ 218 (287)
T 3qou_A 171 EAVLXTIPLQ--------DQ-DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED 218 (287)
T ss_dssp HHHHTTSCGG--------GC-SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC
T ss_pred HHHHHhCchh--------hc-chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc
Confidence 9888764331 11 1223344555556666666667777777666 5543
No 233
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=54.79 E-value=46 Score=26.75 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=34.6
Q ss_pred cccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 321 TLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 321 ~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
.++.++||+.++++ ...+-..|.+|...|.|.-.-+..++
T Consensus 47 ~~t~~ela~~l~~~-~~tvs~~l~~Le~~Gli~r~~~~~D~ 86 (139)
T 3eco_A 47 GLTQNDIAKALQRT-GPTVSNLLRNLERKKLIYRYVDAQDT 86 (139)
T ss_dssp CEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred CcCHHHHHHHhCCC-cccHHHHHHHHHHCCCEeecCCCCCC
Confidence 79999999999998 78899999999999999888776543
No 234
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=54.40 E-value=12 Score=28.84 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 186 FLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 186 ~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
....++..|.++...++|.+|..+|..++. .|..
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 345677889999999999999999999998 5653
No 235
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=54.33 E-value=42 Score=26.86 Aligned_cols=45 Identities=4% Similarity=-0.062 Sum_probs=38.0
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEE
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVV 364 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~ 364 (437)
...++.++||+.++++ ...+-..|..|...|.|.-.-+..++-..
T Consensus 41 ~~~~~~~ela~~l~~s-~~tvs~~l~~L~~~glv~~~~~~~d~R~~ 85 (138)
T 3bpv_A 41 EPGIKQDELATFFHVD-KGTIARTLRRLEESGFIEREQDPENRRRY 85 (138)
T ss_dssp STTCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeecCCCCceeE
Confidence 4679999999999997 78899999999999999888776554433
No 236
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=53.60 E-value=95 Score=25.70 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=36.9
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
.-.++.++||+.++++ ...+-.+|..|...|.|.-.-+..++
T Consensus 58 ~~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~Dr 99 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIK-PQSANKILQDLLANGWIEKAPDPTHG 99 (162)
T ss_dssp CTTCCHHHHHHHHTSC-GGGHHHHHHHHHHTTSEEEEECCSSS
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCcCeEecCCCCcC
Confidence 4579999999999998 67899999999999999988876554
No 237
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=53.45 E-value=20 Score=37.94 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=32.0
Q ss_pred hhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhh
Q psy9642 118 DLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDIT 172 (437)
Q Consensus 118 ~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~ 172 (437)
..+..-.++..+..++.. +|.. ...|..+..+++..++|..|+..+++-+.
T Consensus 445 ~~g~~~~A~~~~~~al~~-~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 495 (681)
T 2pzi_A 445 DLGDVAKATRKLDDLAER-VGWR---WRLVWYRAVAELLTGDYDSATKHFTEVLD 495 (681)
T ss_dssp HHTCHHHHHHHHHHHHHH-HCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHhcc-Ccch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555666777766654 3332 23566677777788888888777766553
No 238
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=52.84 E-value=34 Score=28.50 Aligned_cols=80 Identities=11% Similarity=-0.083 Sum_probs=52.4
Q ss_pred chHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHH
Q psy9642 125 GIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYE 204 (437)
Q Consensus 125 ~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~ 204 (437)
++..++.++. ++|.. ...|..+..+....+++..|+..+.+-+.. .+. + .....++.-|.++..++++.
T Consensus 93 a~~~~~~al~-~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~-----~-~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 93 ELKRLEQELA-ANPDN---FELACELAVQYNQVGRDEEALELLWNILKV-NLG-----A-QDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHHHHH-HSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTT-----T-TTTHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHH-hCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHh-Ccc-----c-ChHHHHHHHHHHHHHhCCCC
Confidence 4666776664 34432 346777888888888888888887765432 110 0 11233456678888888888
Q ss_pred HHHHHHHHHhc
Q psy9642 205 RALYFFEVIIT 215 (437)
Q Consensus 205 ~A~~~~~~ai~ 215 (437)
+|..+|+.++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 88888887764
No 239
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=52.22 E-value=59 Score=26.39 Aligned_cols=42 Identities=10% Similarity=0.104 Sum_probs=35.1
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
...++.++||+.++++ ...+-..|..|...|.|.-.-+..++
T Consensus 54 ~~~~t~~ela~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~d~ 95 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLA-CSTTTDLVDRMERNGLVARVRDEHDR 95 (150)
T ss_dssp HCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred cCCCCHHHHHHHHCCC-chhHHHHHHHHHHCCCeeecCCCCCc
Confidence 3579999999999998 78899999999999999887765443
No 240
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=52.17 E-value=52 Score=26.51 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=35.1
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
..++.++||+.++++ ...+-..|..|...|.|.-.-+..+
T Consensus 42 ~~~t~~~la~~l~~s-~~~vs~~l~~Le~~gli~r~~~~~d 81 (144)
T 1lj9_A 42 PGIIQEKIAELIKVD-RTTAARAIKRLEEQGFIYRQEDASN 81 (144)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred cCcCHHHHHHHHCCC-HhHHHHHHHHHHHCCCEEeecCCCC
Confidence 579999999999997 7889999999999999988776544
No 241
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=52.12 E-value=29 Score=28.18 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=33.3
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
-.++.++||+.++++ ...+-..|..|...|.|.-.-|..+
T Consensus 50 ~~~t~~eLa~~l~~~-~~~vs~~l~~L~~~Glv~r~~~~~D 89 (143)
T 3oop_A 50 EPISQKEIALWTKKD-TPTVNRIVDVLLRKELIVREISTED 89 (143)
T ss_dssp SSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEC----
T ss_pred CCcCHHHHHHHHCCC-HhhHHHHHHHHHHCCCeeccCCCcc
Confidence 679999999999998 7889999999999999987775543
No 242
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=51.81 E-value=23 Score=26.33 Aligned_cols=88 Identities=7% Similarity=-0.005 Sum_probs=60.0
Q ss_pred hhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHH
Q psy9642 117 MDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMI 196 (437)
Q Consensus 117 ~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I 196 (437)
...+..-.++..+..|+.. +|.. ...+..+..++...++|..|+..+.+-+.. .+. .-+.......+|..|.+
T Consensus 15 ~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--~~~~~~~~~~~~~~~~~ 87 (111)
T 2l6j_A 15 FKQGLYREAVHCYDQLITA-QPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRY-TST--AEHVAIRSKLQYRLELA 87 (111)
T ss_dssp HTTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSS--TTSHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCC--ccHHHHHHHHHHHHHHH
Confidence 3345556677788887755 4433 346778889999999999999998886642 221 11223346677888999
Q ss_pred HHHHhhHHHHHHHHH
Q psy9642 197 YLALKNYERALYFFE 211 (437)
Q Consensus 197 ~~~~k~y~~A~~~~~ 211 (437)
+...+++..|.+.|.
T Consensus 88 ~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 88 QGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHCCCCCSSSSS
T ss_pred HHHHHhHhhhHhHHH
Confidence 998888777665543
No 243
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=51.68 E-value=88 Score=31.24 Aligned_cols=84 Identities=5% Similarity=-0.054 Sum_probs=58.6
Q ss_pred cchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhH
Q psy9642 124 RGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNY 203 (437)
Q Consensus 124 ~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y 203 (437)
.++..+..|+..+.|.. ..++..++.+....+.+..|..+.++-+.. . +.+....+..-|.++...+++
T Consensus 304 ~A~~~~~~Al~~~~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-~-------p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 304 EAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAI-E-------DIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp HHHHHHHHHTTTTCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-S-------SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-c-------ccCchHHHHHHHHHHHHhcCH
Confidence 56778888876555543 347888888888999999998888886642 1 111112233335556678899
Q ss_pred HHHHHHHHHHhcccc
Q psy9642 204 ERALYFFEVIITTPA 218 (437)
Q Consensus 204 ~~A~~~~~~ai~~P~ 218 (437)
++|...|..++..|.
T Consensus 373 ~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 373 KSGRMIFKKAREDAR 387 (530)
T ss_dssp HHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999998554
No 244
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=51.67 E-value=38 Score=27.43 Aligned_cols=41 Identities=12% Similarity=0.033 Sum_probs=36.0
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
...++.++||+.++++ ...+-..|..|...|.|.-.-+..+
T Consensus 48 ~~~~~~~ela~~l~~s-~~tvs~~l~~Le~~glv~r~~~~~d 88 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVT-QSAITASVDKLEEMGLVVRVRDRED 88 (146)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred cCCcCHHHHHHHhCCC-chhHHHHHHHHHHCCCEEeecCCCC
Confidence 6789999999999997 7889999999999999987776543
No 245
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=51.41 E-value=3.1 Score=39.39 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=0.0
Q ss_pred ccccHHHHHHHh-CCCChHHHHHHHHHhHHcCceEEEEec
Q psy9642 320 LTLSLADVASRV-QLGTPVQAEIYILKMISQNEIYATINK 358 (437)
Q Consensus 320 s~IsL~dIa~~l-~L~~~~eaE~~l~~mI~~G~I~A~Id~ 358 (437)
.=|++.+|++++ +++ +++++..|..|+.+|.|+.+||.
T Consensus 223 ~Gi~~~~I~~~l~~~~-~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMS-VSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ----------------------------------------
T ss_pred cCCCHHHHHHHhcCCC-HHHHHHHHHHHHhCCEEeccccc
Confidence 458889999998 576 78999999999999999999995
No 246
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=50.91 E-value=94 Score=24.87 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=36.0
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
..++.++||+.++++ ...+-.+|..|...|.|.-.-+..++
T Consensus 40 ~~~t~~ela~~l~~~-~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 40 KPLTISDIMEELKIS-KGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 579999999999998 78899999999999999887766554
No 247
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=50.81 E-value=62 Score=26.61 Aligned_cols=40 Identities=5% Similarity=0.027 Sum_probs=34.9
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
..++..+||+.++++ ...+-..|..|+..|.|.-.-+..+
T Consensus 57 ~~~t~~ela~~l~is-~~tvs~~l~~Le~~Gli~r~~~~~d 96 (154)
T 2eth_A 57 GPKKMKEIAEFLSTT-KSNVTNVVDSLEKRGLVVREMDPVD 96 (154)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHHHHHHTTSEEEEECTTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeeCCCCC
Confidence 479999999999997 7889999999999999988776544
No 248
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=50.61 E-value=23 Score=29.07 Aligned_cols=36 Identities=6% Similarity=0.083 Sum_probs=31.8
Q ss_pred hhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE
Q psy9642 318 TFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYA 354 (437)
Q Consensus 318 ~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A 354 (437)
.-.+++.++||+.+|++ ...+-..+..|..+|.|..
T Consensus 15 ~~~~~~~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGIS-ETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCC
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEec
Confidence 34689999999999997 7899999999999999854
No 249
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=50.59 E-value=46 Score=26.69 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=35.0
Q ss_pred cccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 321 TLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 321 ~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
.++.++||+.++++ ...+-..|..|...|.|.-.-+..++
T Consensus 50 ~~~~~ela~~l~~~-~~tvs~~l~~Le~~Gli~r~~~~~d~ 89 (141)
T 3bro_A 50 EVLQRDLESEFSIK-SSTATVLLQRMEIKKLLYRKVSGKDS 89 (141)
T ss_dssp CCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCHHHHHHHHCCC-cchHHHHHHHHHHCCCEEeeCCCcCC
Confidence 69999999999997 78899999999999999877765443
No 250
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=50.55 E-value=39 Score=28.53 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=36.3
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
.-.++.++||+.++++ ...+-..|..|...|.|.-.-+..++
T Consensus 57 ~~~~t~~eLa~~l~is-~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 57 HGPINLATLATLLGVQ-PSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp HCSEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 3579999999999998 78899999999999999888776443
No 251
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=50.49 E-value=44 Score=27.76 Aligned_cols=42 Identities=10% Similarity=0.164 Sum_probs=35.1
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
...++.++||+.++++ ...+-..|.+|...|.|.-.-|..++
T Consensus 62 ~~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~Dr 103 (159)
T 3s2w_A 62 EDGINQESLSDYLKID-KGTTARAIQKLVDEGYVFRQRDEKDR 103 (159)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 3679999999999998 78899999999999999888766543
No 252
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=50.39 E-value=1e+02 Score=25.01 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=35.8
Q ss_pred hhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEc
Q psy9642 318 TFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFN 366 (437)
Q Consensus 318 ~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~ 366 (437)
....++.++||+.++++ ..-+-..|..|...|.|.-. +.+.+...
T Consensus 19 ~~~~~~~~ela~~l~vs-~~tvs~~l~~Le~~Glv~r~---~~~~~~LT 63 (142)
T 1on2_A 19 EKGYARVSDIAEALAVH-PSSVTKMVQKLDKDEYLIYE---KYRGLVLT 63 (142)
T ss_dssp HHSSCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEE---TTTEEEEC
T ss_pred hcCCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEEe---eCceEEEc
Confidence 34679999999999998 78889999999999998654 24555544
No 253
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=50.12 E-value=19 Score=31.14 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=44.4
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEccCCCCCCchHHHHHHH
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDNPQRFNNPLTFAQIE 382 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~e~~~~l~ 382 (437)
..++.++||+.++++ +.-+++++.++...|.|..+= -++|-.....+++..+-.++...++
T Consensus 27 ~~~s~~~IA~~~~is-~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar~p~~Itl~dIi~ave 87 (162)
T 3k69_A 27 SKVASRELAQSLHLN-PVMIRNILSVLHKHGYLTGTV-GKNGGYQLDLALADMNLGDLYDLTI 87 (162)
T ss_dssp SCBCHHHHHHHHTSC-GGGTHHHHHHHHHTTSSEEEC-STTCEEECCSCGGGSBHHHHHHHHS
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEeec-CCCCCeEecCChhhCcHHHHHHHHc
Confidence 359999999999998 889999999999999986553 2344455555555544445555554
No 254
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=50.02 E-value=42 Score=26.78 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=35.1
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
...++.++||+.++++ ...+-..|..|...|.|.-.-+..+
T Consensus 45 ~~~~~~~ela~~l~~~-~~tvs~~l~~L~~~gli~r~~~~~d 85 (139)
T 3bja_A 45 SGKVSMSKLIENMGCV-PSNMTTMIQRMKRDGYVMTEKNPND 85 (139)
T ss_dssp SCSEEHHHHHHHCSSC-CTTHHHHHHHHHHTTSEEEEECSSC
T ss_pred cCCcCHHHHHHHHCCC-hhHHHHHHHHHHHCCCeeeccCCCC
Confidence 4579999999999998 6788899999999999987766544
No 255
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=49.74 E-value=23 Score=28.92 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=32.3
Q ss_pred HhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCE
Q psy9642 317 KTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGM 362 (437)
Q Consensus 317 k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~ 362 (437)
.... ++.++||+.++++ ...+-.+|..|...|.|.-.-|..++-
T Consensus 48 ~~~~-~t~~eLa~~l~~s-~~tvs~~l~~L~~~Glv~r~~~~~d~R 91 (146)
T 3tgn_A 48 SEES-LTNSELARRLNVS-QAAVTKAIKSLVKEGMLETSKDSKDAR 91 (146)
T ss_dssp TTCC-CCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEC--------
T ss_pred HhCC-CCHHHHHHHHCCC-HHHHHHHHHHHHHCCCeEeccCCCCCc
Confidence 3445 9999999999998 788999999999999998877654443
No 256
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=49.58 E-value=53 Score=25.83 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=33.2
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEe
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATIN 357 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id 357 (437)
..++..+||+.+|++ ...+-..|..|.+.|.|...-+
T Consensus 37 ~~~s~~eLa~~lgis-~stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMN-LTTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCC-HHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEe
Confidence 568999999999998 7889999999999999987754
No 257
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=49.40 E-value=36 Score=27.81 Aligned_cols=41 Identities=7% Similarity=0.002 Sum_probs=35.3
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
...++.++||+.++++ ...+-..|..|...|.|.-.-+..+
T Consensus 52 ~~~~t~~ela~~l~~~-~~~vs~~l~~Le~~Glv~r~~~~~d 92 (152)
T 3bj6_A 52 TPGATAPQLGAALQMK-RQYISRILQEVQRAGLIERRTNPEH 92 (152)
T ss_dssp STTEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECCSSS
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCeeecCCccc
Confidence 4579999999999998 7889999999999999987766533
No 258
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=49.29 E-value=1.7e+02 Score=28.64 Aligned_cols=140 Identities=13% Similarity=0.051 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhCCCCCCCcc-ccHHHhHhhccCCHH-HHHHHHHHhcCCHHHHH
Q psy9642 204 ERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVYGKAPNLPKN-VSQAICRYIKPLSQP-YLDLVSVYTNNNSTELQ 281 (437)
Q Consensus 204 ~~A~~~~~~ai~~P~~~~s~i~vea~Kk~iLv~Lil~G~~~~lp~~-~s~~~~r~~k~~~~p-Y~~L~~af~~~d~~~~~ 281 (437)
.-|.-+|....-+|-..++..+-.++-.+ .|+..|-.+ .|-+ .+.. +...-.. |..|.++-..||+..|-
T Consensus 187 ~aai~H~~f~~IHPF~DGNGR~~Rll~~l---~L~~~g~~~-~~~~~ls~~----i~~~~~~Yy~~L~~~~~~~d~~~~i 258 (373)
T 3eqx_A 187 KMAMAHYQFEAIHPFIDGNGRTGRVLNIL---YLIDQQLLS-APILYLSRY----IVAHKQDYYRLLLNVTTQQEWQPWI 258 (373)
T ss_dssp HHHHHHHHHHHHCCSSSCHHHHHHHHHHH---HHHHTTSCS-SSCCCTHHH----HHHTHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCCchHHHHHHHH---HHHhcCCCC-CccccHHHH----HHHHHHHHHHHHHHhhccCCCchHH
Confidence 34666777777789876666554433222 233345443 2222 2332 2223334 45676777789988765
Q ss_pred HHHHhccccccccchhhHHHHHH---HHHHHH-----------HHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhH
Q psy9642 282 HLLLKYADVFSRDENTGLTKQIV---ASLYKN-----------NIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMI 347 (437)
Q Consensus 282 ~~~~~~~~~f~~D~n~~Lv~~l~---~~v~r~-----------~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI 347 (437)
..+-..-..=. +.....+..+. ....++ .+..+-...-.++.+++++.++.+ ..-|...|.+++
T Consensus 259 ~f~l~~i~~~~-~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~p~~t~~~~~~~~~~S-~~TA~r~L~~L~ 336 (373)
T 3eqx_A 259 IFILNAVEQTA-KWTTHKIAAARELIAHTTEYVRQQLPKIYSHELVQVIFEQPYCRIQNLVESGLAK-RQTASVYLKQLC 336 (373)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHCSEEEHHHHHHTSSSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHCCCccHHHHHHHhCcC-HHHHHHHHHHHH
Confidence 44332110000 00111111111 111111 111111112247889999999987 788999999999
Q ss_pred HcCceE
Q psy9642 348 SQNEIY 353 (437)
Q Consensus 348 ~~G~I~ 353 (437)
+.|.|.
T Consensus 337 e~GiL~ 342 (373)
T 3eqx_A 337 DIGVLE 342 (373)
T ss_dssp HTTSCE
T ss_pred HCCcEE
Confidence 999985
No 259
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=49.25 E-value=79 Score=29.20 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=60.9
Q ss_pred HhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEccCCCCCCchHHHHHHHHHHHHHHHHHH--H
Q psy9642 317 KTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDNPQRFNNPLTFAQIESNIRACMHLDG--K 394 (437)
Q Consensus 317 k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~e~~~~l~~~i~~~~~L~~--~ 394 (437)
.-|.--.+.|++..++++ +.++..++..|+..|.|.. |+ ++ +.| ..+..+.+.+.+...+ -+. .
T Consensus 153 ~g~~pp~~~dl~~~l~~~-~~~~~~~l~~l~~~g~lv~-l~--~~-~~~--------~~~~~~~~~~~l~~~~-~~~~it 218 (258)
T 1lva_A 153 SRWQPPSFKEVAGSFNLD-PSELEELLHYLVREGVLVK-IN--DE-FYW--------HRQALGEAREVIKNLA-STGPFG 218 (258)
T ss_dssp HTTSCCBHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEE-SS--SS-BEE--------EHHHHHHHHHHHHHHH-TTSCBC
T ss_pred CCCCCCCHHHHHhHhCCC-HHHHHHHHHHHHHCCCEEE-ec--CC-eEE--------cHHHHHHHHHHHHHHH-hcCCcC
Confidence 456667889999999997 7899999999999998754 32 22 223 3445666666665554 233 7
Q ss_pred HHHHHHHhhCCHHHHHHhc
Q psy9642 395 FQAMEEEILVNPLYVKKAA 413 (437)
Q Consensus 395 ~~~~d~~l~~~~~yi~k~~ 413 (437)
+.++++.+++|+.|.--.+
T Consensus 219 ~a~~Rd~lg~SRK~aIplL 237 (258)
T 1lva_A 219 LAEARDALGSSRKYVLPLL 237 (258)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHH
Confidence 8899999999999885443
No 260
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=49.20 E-value=47 Score=27.21 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=35.5
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
...++.++||+.++++ ...+-..|..|...|.|.-.-+..+
T Consensus 49 ~~~~t~~ela~~l~~s-~~tvs~~l~~Le~~glv~r~~~~~d 89 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVK-PSAVTLMADRLEQKNLIARTHNTKD 89 (155)
T ss_dssp HSEEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeecCCCCC
Confidence 4579999999999997 7889999999999999987776543
No 261
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=49.08 E-value=52 Score=35.72 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy9642 145 SLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVI 213 (437)
Q Consensus 145 ~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~a 213 (437)
.+-..+++-|+..++|+-||++-.+-+.- .|.++-. .|+-+.+|+.+++|+.|+-.+-.|
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~t-W~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFES-WYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHH-HHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHH-HHHHHHHHHHhccHHHHHHHHhcC
Confidence 35556889999999999999988776552 2333444 478899999999999998766554
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.91 E-value=59 Score=32.39 Aligned_cols=92 Identities=10% Similarity=-0.037 Sum_probs=63.7
Q ss_pred hHHHHHHHHHhCC-C-Ccc-hhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhh
Q psy9642 126 IPLIQTAIKKIQT-S-DSQ-LTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKN 202 (437)
Q Consensus 126 i~~l~~ai~rl~~-~-~~~-lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~ 202 (437)
+.-+...+..... + ++. ..-.|..+.+..+..|++..|++.+.+- ...|. +..+.+..++.--.+++..+|
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~-~~~~~-----~~~~kid~~l~~irl~l~~~d 183 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKS-LSKAI-----STGAKIDVMLTIARLGFFYND 183 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHH-HHHHT-----CCCSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhcC-----ChHHHHHHHHHHHHHHHHhcc
Confidence 4455555544322 1 222 3447889999999999999999998873 33444 234577777777778888899
Q ss_pred HHHHHHHHHHHhcccccccCH
Q psy9642 203 YERALYFFEVIITTPALAVSH 223 (437)
Q Consensus 203 y~~A~~~~~~ai~~P~~~~s~ 223 (437)
|..|..++..+-+.......+
T Consensus 184 ~~~~~~~~~ka~~~~~~~~d~ 204 (429)
T 4b4t_R 184 QLYVKEKLEAVNSMIEKGGDW 204 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHHHHHhhhcCCCH
Confidence 999999999987755443343
No 263
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=47.99 E-value=35 Score=27.77 Aligned_cols=41 Identities=10% Similarity=-0.059 Sum_probs=34.9
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
...++.++||+.++++ ...+-.+|..|...|.|.-.-+..+
T Consensus 43 ~~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D 83 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSLP-KQTVSGVCKTLAGQGLIEWQEGEQD 83 (145)
T ss_dssp HCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEECCCSSC
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeeccCCCC
Confidence 4569999999999998 7889999999999999987665443
No 264
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=47.78 E-value=1e+02 Score=24.26 Aligned_cols=41 Identities=5% Similarity=-0.144 Sum_probs=36.0
Q ss_pred ccccHHHHHHHh-CCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 320 LTLSLADVASRV-QLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 320 s~IsL~dIa~~l-~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
-.++..+|++.+ +++ ...+-..|..|...|.|.-..+..++
T Consensus 34 ~~~~~~eLa~~l~~is-~~tvs~~L~~Le~~GlI~r~~~~~d~ 75 (112)
T 1z7u_A 34 GTKRNGELMRALDGIT-QRVLTDRLREMEKDGLVHRESFNELP 75 (112)
T ss_dssp SCBCHHHHHHHSTTCC-HHHHHHHHHHHHHHTSEEEEEECCSS
T ss_pred CCCCHHHHHHHhccCC-HHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 578999999999 997 78899999999999999988876443
No 265
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=47.71 E-value=48 Score=26.88 Aligned_cols=40 Identities=5% Similarity=0.019 Sum_probs=33.5
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKK 359 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~ 359 (437)
...++.++||+.++++ ...+-..|.+|...|.|.-.-+..
T Consensus 48 ~~~~~~~~la~~l~i~-~~~vs~~l~~Le~~glv~r~~~~~ 87 (147)
T 2hr3_A 48 GGDVTPSELAAAERMR-SSNLAALLRELERGGLIVRHADPQ 87 (147)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEC---
T ss_pred CCCCCHHHHHHHhCCC-hhhHHHHHHHHHHCCCEeeCCCCC
Confidence 5689999999999997 788999999999999998776543
No 266
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=47.19 E-value=73 Score=24.17 Aligned_cols=46 Identities=4% Similarity=-0.033 Sum_probs=36.6
Q ss_pred hccccHHHH----HHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEE
Q psy9642 319 FLTLSLADV----ASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVF 365 (437)
Q Consensus 319 Ys~IsL~dI----a~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F 365 (437)
...++..+| |+.++++ ...+-..|..|...|.|.-.-+.....+..
T Consensus 20 ~~~~~~~el~~~la~~l~is-~~tvs~~l~~Le~~gli~r~~~~r~~~~~L 69 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMS-TATFYDAKKFLIQEGFVKERQERGEKRLYL 69 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCC-HHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred cCCcCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCEEEEecCCceEEEE
Confidence 356899999 8888997 788999999999999998888763333333
No 267
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=47.08 E-value=23 Score=29.65 Aligned_cols=39 Identities=3% Similarity=0.056 Sum_probs=33.1
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE--EEecC
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYA--TINKK 359 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A--~Id~~ 359 (437)
.-.+.++||++++++ +.++...|.+++..|.|.= +.|..
T Consensus 50 ~~ps~~~LA~~~~~s-~~~v~~~L~~L~~KGlI~i~~~~d~~ 90 (135)
T 2v79_A 50 YFPTPNQLQEGMSIS-VEECTNRLRMFIQKGFLFIEECEDQN 90 (135)
T ss_dssp CSCCHHHHHTTSSSC-HHHHHHHHHHHHHHTSCEEEEEECTT
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEeEecCC
Confidence 458999999999998 8999999999999999865 44443
No 268
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=46.80 E-value=43 Score=30.85 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=58.4
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.+...+..++. ++|.. .+..+..++.+....+.+..|..++++-+.. + +.. +..|.+...+
T Consensus 112 ~~~~~~A~~~~~~al~-~~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-------p~~---~~~~~~~a~~ 177 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA-IEDID--PTLVYIQYMKFARRAEGIKSGRMIFKKARED-A-------RTR---HHVYVTAALM 177 (308)
T ss_dssp TTCHHHHHHHHHHHHT-SSSSC--THHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-T-------TCC---THHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh-ccccC--ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-------CCC---HHHHHHHHHH
Confidence 4444556677777764 45543 2337888889999999999998888887642 1 111 1123344444
Q ss_pred H---HhhHHHHHHHHHHHhc-cccc
Q psy9642 199 A---LKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~---~k~y~~A~~~~~~ai~-~P~~ 219 (437)
. .+++.+|...|+.++. .|..
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~p~~ 202 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKYGDI 202 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3 5899999999999998 6753
No 269
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=46.66 E-value=19 Score=34.38 Aligned_cols=74 Identities=9% Similarity=0.105 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCC--CCC-ChH-----hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-c
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEG--PQF-DTK-----YFLQYFYYGGMIYLALKNYERALYFFEVIIT-T 216 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~--~~~-~~~-----~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~ 216 (437)
.+..+...+...++|..|+....+-+....... ... ... .....++..|.++..+++|.+|..+|..++. .
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 355666777888899999888777554211000 000 000 0113677889999999999999999999998 5
Q ss_pred ccc
Q psy9642 217 PAL 219 (437)
Q Consensus 217 P~~ 219 (437)
|..
T Consensus 261 p~~ 263 (338)
T 2if4_A 261 EKN 263 (338)
T ss_dssp TTC
T ss_pred CCC
Confidence 653
No 270
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=46.31 E-value=25 Score=28.59 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=29.2
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
.-.++.++||+.++++ ...+-..|.+|...|.|.-.-+..++
T Consensus 49 ~~~~t~~eLa~~l~~~-~~tvs~~l~~L~~~Glv~r~~~~~Dr 90 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRD-KALITRKIRELEGRNLVRRERNPSDQ 90 (142)
T ss_dssp TTTCCHHHHHHHHC----CHHHHHHHHHHHTTSEEC-------
T ss_pred CCCcCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 3479999999999998 67888999999999999887776554
No 271
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=46.23 E-value=42 Score=33.33 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE
Q psy9642 308 YKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYA 354 (437)
Q Consensus 308 ~r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A 354 (437)
-+..|.++-.....+|-++||+.++|+ ..-+-.++.+|+++|.|.-
T Consensus 40 n~~~il~~l~~~~~~sr~ela~~~gls-~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 40 NAGRVYKLIDQKGPISRIDLSKESELA-PASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEe
Confidence 344455555667899999999999998 7899999999999998855
No 272
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=46.20 E-value=30 Score=34.01 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE
Q psy9642 308 YKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYA 354 (437)
Q Consensus 308 ~r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A 354 (437)
-+..|.++-.....+|-++||+.++|+ ..-+-.++.+|+++|.|.-
T Consensus 17 n~~~il~~l~~~~~~sr~~la~~~~ls-~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 17 NAGAVYRLIDQLGPVSRIDLSRLAQLA-PASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHSSCSCCHHHHHHHTTCC-HHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCcEEe
Confidence 344455555667899999999999998 7899999999999998854
No 273
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=46.17 E-value=39 Score=27.73 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=33.8
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE--EEecCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYA--TINKKD 360 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A--~Id~~~ 360 (437)
.-.++.++||+.++++ ...+-..|..|+..|.|.- .-|..+
T Consensus 53 ~~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~~~d 95 (154)
T 2qww_A 53 TPGISVADLTKRLIIT-GSSAAANVDGLISLGLVVKLNKTIPND 95 (154)
T ss_dssp STTEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEESCC--CTT
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEecCcCCCCC
Confidence 3569999999999997 7889999999999999987 666544
No 274
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=45.91 E-value=79 Score=27.27 Aligned_cols=42 Identities=7% Similarity=0.052 Sum_probs=36.9
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
...++.++||+.++++ ...+-.+|..|+..|.|.-.-+..++
T Consensus 55 ~~~~t~~eLa~~l~is-~~tvs~~l~~Le~~GlV~r~~~~~Dr 96 (189)
T 3nqo_A 55 EEETTLNNIARKMGTS-KQNINRLVANLEKNGYVDVIPSPHDK 96 (189)
T ss_dssp GGGCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 3479999999999998 78899999999999999988887654
No 275
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=45.65 E-value=48 Score=27.49 Aligned_cols=41 Identities=5% Similarity=-0.007 Sum_probs=34.4
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
...++.++||+.++++ ...+-..|..|...|.|.-.-+..+
T Consensus 64 ~~~~t~~ela~~l~is-~~tvs~~l~~Le~~Gli~r~~~~~d 104 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVE-QSTLSRALDGLQADGLVRREVDSDD 104 (162)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEC--C
T ss_pred CCCCCHHHHHHHHCCC-hhHHHHHHHHHHHCCCEEecCCCCC
Confidence 4579999999999998 7889999999999999987765433
No 276
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=45.52 E-value=36 Score=27.46 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=34.8
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
..++.++||+.++++ ...+-..|.+|...|.|.-.-|..+
T Consensus 52 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D 91 (127)
T 2frh_A 52 KEYYLKDIINHLNYK-QPQVVKAVKILSQEDYFDKKRNEHD 91 (127)
T ss_dssp SEEEHHHHHHHSSSH-HHHHHHHHHHHHHTTSSCCBCCSSS
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEecCCCCC
Confidence 569999999999997 7888999999999999987766654
No 277
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=45.37 E-value=35 Score=27.84 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=31.9
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
...++.++||+.++++ ...+-..|..|...|.|.-.-+..+
T Consensus 52 ~~~~t~~ela~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D 92 (148)
T 3nrv_A 52 ASDCSVQKISDILGLD-KAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
T ss_dssp SSSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEC------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeecCCCC
Confidence 4589999999999998 7889999999999999987765443
No 278
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=45.16 E-value=70 Score=24.35 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceE
Q psy9642 309 KNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIY 353 (437)
Q Consensus 309 r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~ 353 (437)
+.-+..|...=.-++-.+||+.+|++ -.++.+.+-.|=.+|.|.
T Consensus 22 ekVLe~LkeaG~PlkageIae~~Gvd-KKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAP-KRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHcCCcc
Confidence 34456667777899999999999998 799999999999999864
No 279
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=45.02 E-value=16 Score=36.99 Aligned_cols=58 Identities=19% Similarity=0.187 Sum_probs=46.3
Q ss_pred HHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 153 LCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 153 l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
.+...++|..|+....+-+.. . + +....++..|.++..+++|++|..+|+.++. .|..
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~-~-------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL-N-------P-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH-C-------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHhCCHHHHHHHHHHHHHh-C-------C-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 455678899998888877653 1 1 2467788899999999999999999999999 5654
No 280
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=44.89 E-value=41 Score=27.62 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=33.5
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
...++.++||+.++++ ...+-..|.+|...|.|.-.-+..+
T Consensus 59 ~~~~t~~ela~~l~~s-~~tvs~~l~~Le~~glv~r~~~~~d 99 (153)
T 2pex_A 59 TDERSVSEIGERLYLD-SATLTPLLKRLQAAGLVTRTRAASD 99 (153)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEC----
T ss_pred CCCcCHHHHHHHhCCC-cccHHHHHHHHHHCCCEeecCCccc
Confidence 4679999999999997 7889999999999999987765433
No 281
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=44.77 E-value=31 Score=28.45 Aligned_cols=42 Identities=7% Similarity=0.052 Sum_probs=32.3
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
.-.++.++||+.++++ ...+-..|..|+..|.|.-.-|..++
T Consensus 53 ~~~~~~~eLa~~l~~~-~~~vs~~l~~L~~~Glv~r~~~~~D~ 94 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLS-SNTLTPMLKRLEQSGWVKRERQQSDK 94 (149)
T ss_dssp SSSEEHHHHHHHHTCC-HHHHHHHHHHHHHHTSEEC-------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeeCCCCCCc
Confidence 4789999999999998 78899999999999999877765443
No 282
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=44.00 E-value=46 Score=27.22 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEc
Q psy9642 297 TGLTKQIVASLYKNNIKRLTKTFLTL-SLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFN 366 (437)
Q Consensus 297 ~~Lv~~l~~~v~r~~I~~l~k~Ys~I-sL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~ 366 (437)
..+..++...+.+.-+..--+.=.+| |..++|+.+|++ ..-+..-+..+..+|.|.. .+..|+.+-.
T Consensus 10 ~~~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vS-r~tvr~Al~~L~~~Gli~~--~~g~G~~V~~ 77 (126)
T 3by6_A 10 RPVYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKIN-PNTVAKAYKELEAQKVIRT--IPGKGTFITG 77 (126)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE--ETTTEEEECS
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEE--ecCCeEEEcc
Confidence 34555555444333332222334578 999999999997 7889999999999999854 4556766543
No 283
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=43.63 E-value=57 Score=24.83 Aligned_cols=44 Identities=14% Similarity=-0.019 Sum_probs=35.3
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEccC
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDN 368 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~ 368 (437)
..++..+||+.++++ ...+-.+|..|...|.|...- |.....+.
T Consensus 42 ~~~~~~eLa~~l~is-~~tv~~~L~~L~~~Glv~~~~----g~y~l~~~ 85 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLS-KKQLDYHLKVLEAGFCIERVG----ERWVVTDA 85 (96)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEET----TEEEECTT
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEC----CEEEECCC
Confidence 569999999999998 788999999999999997542 45544443
No 284
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=43.37 E-value=38 Score=28.24 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=33.8
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
.-.++.++||+.++++ ...+-..|.+|...|.|.-.-|..+
T Consensus 65 ~~~~t~~eLa~~l~~~-~~~vs~~l~~Le~~Glv~r~~~~~D 105 (161)
T 3e6m_A 65 YGELTVGQLATLGVME-QSTTSRTVDQLVDEGLAARSISDAD 105 (161)
T ss_dssp HSEEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEECC---C
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeeCCccc
Confidence 3579999999999998 7889999999999999987766544
No 285
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=43.06 E-value=93 Score=24.92 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=32.3
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEE
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATI 356 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~I 356 (437)
-..++..+||+.+|++ ...+-.+|..|...|.|...-
T Consensus 54 ~~~~s~~eLa~~l~is-~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 54 DEELCVCDIANILGVT-IANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp SSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEE
Confidence 4679999999999998 789999999999999997653
No 286
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=42.94 E-value=63 Score=27.21 Aligned_cols=41 Identities=10% Similarity=-0.037 Sum_probs=32.7
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
--.++.++||+.++++ ...+-..|.+|...|.|.-.-|..+
T Consensus 66 ~~~~t~~eLa~~l~i~-~~tvs~~l~~Le~~GlV~r~~~~~D 106 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIE-QPSLVRTLDQLEDKGLISRQTCASD 106 (166)
T ss_dssp CSSEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEC-----
T ss_pred CCCCCHHHHHHHHCCC-HhhHHHHHHHHHHCCCEEeeCCCCC
Confidence 4569999999999997 7889999999999999987776544
No 287
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=42.91 E-value=48 Score=33.19 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=58.4
Q ss_pred hCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYL 198 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~ 198 (437)
.+..-.+...+..++. ++|. ..+..+..++++....+.+..|..++++-+.. + +...-.|.-.+.+.+.
T Consensus 334 ~g~~~~A~~~~~~al~-~~p~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-~-------~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA-IEDI--DPTLVYIQYMKFARRAEGIKSGRMIFKKARED-A-------RTRHHVYVTAALMEYY 402 (530)
T ss_dssp TTCHHHHHHHHHHHHH-SSSS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-T-------TCCTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhC-cccc--CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-c-------CCchHHHHHHHHHHHH
Confidence 3444556666677665 4443 23457888888888899999998888887642 1 1112222222333344
Q ss_pred HHhhHHHHHHHHHHHhc-cccc
Q psy9642 199 ALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 199 ~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
..+++.+|...|+.++. .|..
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~ 424 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDI 424 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTC
T ss_pred HcCChhHHHHHHHHHHHHCCCC
Confidence 57899999999999998 6653
No 288
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=42.82 E-value=4.8e+02 Score=30.75 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=19.0
Q ss_pred HHHHHHHhhhccCCCHHHHHHHHHhhHH
Q psy9642 6 EQFVNNVRQLSAQGSFRELTEIIQKSMD 33 (437)
Q Consensus 6 ~~~v~~v~~~s~~~~~~~L~~~l~~~~~ 33 (437)
+.++.-+..+...|++.+++.+|.....
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555567888999998875443
No 289
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=42.44 E-value=75 Score=24.79 Aligned_cols=42 Identities=2% Similarity=-0.043 Sum_probs=36.6
Q ss_pred hccccHHHHHHHh-CCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 319 FLTLSLADVASRV-QLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 319 Ys~IsL~dIa~~l-~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
...++..+|++.+ +++ ...+-..|..|.+.|.|..+.+..++
T Consensus 25 ~~~~~~~eLa~~l~~is-~~tls~~L~~Le~~GlI~r~~~~~d~ 67 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNIT-QKMLTQQLRELEADGVINRIVYNQVP 67 (107)
T ss_dssp TCCBCHHHHHHHCTTSC-HHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCCCHHHHHHHhcCCC-HHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4679999999999 998 78888999999999999988886543
No 290
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=42.23 E-value=64 Score=24.52 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=33.0
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEe
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATIN 357 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id 357 (437)
..++..+||+.+|++ ...+-.++..|.+.|.|...-+
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~~L~~~Glv~~~~~ 71 (98)
T 3jth_A 35 QELSVGELCAKLQLS-QSALSQHLAWLRRDGLVTTRKE 71 (98)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEe
Confidence 579999999999998 7889999999999999987643
No 291
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=42.12 E-value=49 Score=29.26 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=35.7
Q ss_pred HHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEE
Q psy9642 311 NIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYAT 355 (437)
Q Consensus 311 ~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~ 355 (437)
.|..+-. -.+++.++||+.+|++ ...+-..|..|...|.|...
T Consensus 24 ~IL~~L~-~~~~s~~eLA~~lglS-~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 24 KILKLLR-NKEMTISQLSEILGKT-PQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH-cCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEE
Confidence 3433333 3789999999999997 78999999999999999876
No 292
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=41.97 E-value=1.1e+02 Score=24.62 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=34.7
Q ss_pred cHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCE
Q psy9642 323 SLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGM 362 (437)
Q Consensus 323 sL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~ 362 (437)
+.++||+.++++ ...+-..|..|...|.|.-.-+..++-
T Consensus 52 ~~~~la~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D~R 90 (144)
T 3f3x_A 52 SMVYLANRYFVT-QSAITAAVDKLEAKGLVRRIRDSKDRR 90 (144)
T ss_dssp EHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CHHHHHHHHCCC-hhHHHHHHHHHHHCCCEEeccCCCCCc
Confidence 999999999998 788999999999999999888876543
No 293
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=41.32 E-value=1.1e+02 Score=23.74 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=35.9
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEc
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFN 366 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~ 366 (437)
..++..+||+.++++ ...+-.+|..|...|.|...-+ +..+.+.
T Consensus 38 ~~~~~~ela~~l~is-~stvs~~L~~L~~~Glv~~~~~--gr~~~y~ 81 (106)
T 1r1u_A 38 SEASVGHISHQLNLS-QSNVSHQLKLLKSVHLVKAKRQ--GQSMIYS 81 (106)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEE--TTEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEe--CCEEEEE
Confidence 568999999999998 7889999999999999987654 3444444
No 294
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=41.11 E-value=42 Score=27.78 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=31.9
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
...++.++||+.++++ ...+-..|..|+..|.|.-.-+..+
T Consensus 61 ~~~~t~~ela~~l~is-~~tvs~~l~~Le~~glv~r~~~~~d 101 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMD-KVAVSRAVARLLERGFIRRETHGDD 101 (162)
T ss_dssp STTCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEC------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeeecCCCC
Confidence 4679999999999997 7889999999999999987665443
No 295
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=40.87 E-value=79 Score=31.61 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=42.5
Q ss_pred hCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q psy9642 157 AQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITT 216 (437)
Q Consensus 157 ~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~~ 216 (437)
.+.|..|+++..+-+.-. .+.-+-+..+.+.-+.-.|.+|..+++|++|..+++.++..
T Consensus 311 ~g~~~eA~~~~~~~L~i~-~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i 369 (433)
T 3qww_A 311 YKSPSELLEICELSQEKM-SSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369 (433)
T ss_dssp TSCHHHHHHHHHHHHHHH-TTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHh-hCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 356788888776644321 11112244568888889999999999999999999988763
No 296
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=40.67 E-value=80 Score=23.95 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=28.5
Q ss_pred ccHHHHHHHhCCCChHHHHHHHHHhHHcCce
Q psy9642 322 LSLADVASRVQLGTPVQAEIYILKMISQNEI 352 (437)
Q Consensus 322 IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I 352 (437)
++.++||+.++++ ...+-.+|..|...|.|
T Consensus 31 ~t~~eLa~~l~i~-~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 31 VYIQYIASKVNSP-HSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp EEHHHHHHHSSSC-HHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHHCcC-HHHHHHHHHHHHHCcCc
Confidence 9999999999998 78899999999999999
No 297
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=39.92 E-value=37 Score=27.96 Aligned_cols=40 Identities=8% Similarity=0.019 Sum_probs=32.9
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKK 359 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~ 359 (437)
...++.++||+.++++ ...+-..|..|...|.|.-.-+..
T Consensus 55 ~~~~t~~ela~~l~i~-~~tvs~~l~~Le~~Glv~r~~~~~ 94 (155)
T 3cdh_A 55 NDAMMITRLAKLSLME-QSRMTRIVDQMDARGLVTRVADAK 94 (155)
T ss_dssp CSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEECC---
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeccCCC
Confidence 4579999999999998 788999999999999997665543
No 298
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=39.57 E-value=90 Score=24.75 Aligned_cols=37 Identities=8% Similarity=-0.055 Sum_probs=33.7
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEe
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATIN 357 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id 357 (437)
..++..+||+.+|++ ...+-.+|..|...|.|...-+
T Consensus 30 ~~~~~~eLa~~l~is-~~tvs~hL~~L~~~GlV~~~~~ 66 (118)
T 3f6o_A 30 GPATVSELAKPFDMA-LPSFMKHIHFLEDSGWIRTHKQ 66 (118)
T ss_dssp CCEEHHHHHTTCCSC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHhCcC-HHHHHHHHHHHHHCCCeEEEec
Confidence 678999999999998 7889999999999999988776
No 299
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.19 E-value=2.3e+02 Score=28.15 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT 215 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~ 215 (437)
+...++++....|+|..|..++..-..+-. ...+...-++|+....++++..+||.+|...+..+-.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~---~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETY---GSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---SSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 346788999999999999999877554422 2346677899999999999999999999999988643
No 300
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=38.78 E-value=33 Score=26.07 Aligned_cols=36 Identities=3% Similarity=0.087 Sum_probs=30.3
Q ss_pred HhhccccHHHHHHHh-CCCChHHHHHHHHHhHHcCceE
Q psy9642 317 KTFLTLSLADVASRV-QLGTPVQAEIYILKMISQNEIY 353 (437)
Q Consensus 317 k~Ys~IsL~dIa~~l-~L~~~~eaE~~l~~mI~~G~I~ 353 (437)
+.=++.-+.|+++.+ +.. +.++..++.+||.+|.+.
T Consensus 17 ~~KskfYf~D~~k~~P~~k-~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 17 GSKSKFYFNDFTDLFPDMK-QREVKKILTALVNDEVLE 53 (78)
T ss_dssp HHSSCEEHHHHHHHCTTSC-HHHHHHHHHHHHHTTSEE
T ss_pred cccccchHHHHHHHccccC-HHHHHHHHHHHHhcCceE
Confidence 345678899999998 665 899999999999999863
No 301
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=38.62 E-value=91 Score=27.21 Aligned_cols=73 Identities=10% Similarity=0.053 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCchHHHhhhhHhhhhhh---cCCC-------------CCChHhhHHHHHHHHHHHHHHhhHHHHHHHH
Q psy9642 147 HSDLCQLCLLAQNFKPALEFLDVDITTIA---NEGP-------------QFDTKYFLQYFYYGGMIYLALKNYERALYFF 210 (437)
Q Consensus 147 h~~l~~l~L~~~~y~~Al~il~~~I~~~~---~~~~-------------~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~ 210 (437)
-..+...-+..+.|+.|+.....-+-... +.+. ..+.....+..|--+.+++.+++|.+|...+
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~L 145 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAIL 145 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 34556777889999999888877433221 0000 0011123455567999999999999999987
Q ss_pred HHHhcccccccC
Q psy9642 211 EVIITTPALAVS 222 (437)
Q Consensus 211 ~~ai~~P~~~~s 222 (437)
+. .|...-+
T Consensus 146 e~---Ip~k~Rt 154 (167)
T 3ffl_A 146 DG---IPSRQRT 154 (167)
T ss_dssp HT---SCGGGCC
T ss_pred hc---CCchhcC
Confidence 65 4544333
No 302
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=38.60 E-value=27 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=22.1
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHH
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYIL 344 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~ 344 (437)
|.+.++.+||..++++ .+++|.++.
T Consensus 46 YL~~~l~eia~~l~~~-~~eve~vL~ 70 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCS-VEELEKVRQ 70 (76)
T ss_dssp TTCCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCC-HHHHHHHHH
Confidence 8999999999999986 888987764
No 303
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=37.20 E-value=49 Score=24.89 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-----ccccHHHHHHHhCCCChHHHHHHHHHhHH
Q psy9642 299 LTKQIVASLYKNNIKRLTKTF-----LTLSLADVASRVQLGTPVQAEIYILKMIS 348 (437)
Q Consensus 299 Lv~~l~~~v~r~~I~~l~k~Y-----s~IsL~dIa~~l~L~~~~eaE~~l~~mI~ 348 (437)
.+.+++..+....-..+...| .-.|..+||..+|++ ..-|...+.....
T Consensus 11 ~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis-~~tV~~~~~ra~~ 64 (87)
T 1tty_A 11 ELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVT-RERIRQIEVKALR 64 (87)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 455555566555555666666 579999999999998 7777777766553
No 304
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=36.99 E-value=31 Score=25.35 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhc-cccc
Q psy9642 191 YYGGMIYLALKNYERALYFFEVIIT-TPAL 219 (437)
Q Consensus 191 Yy~G~I~~~~k~y~~A~~~~~~ai~-~P~~ 219 (437)
|-.|.++...++|.+|..+|+.++. .|..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 33 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG 33 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 4578999999999999999999998 6654
No 305
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=36.92 E-value=61 Score=25.79 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEE
Q psy9642 298 GLTKQIVASLYKNNIKRLTKTFLTL-SLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVF 365 (437)
Q Consensus 298 ~Lv~~l~~~v~r~~I~~l~k~Ys~I-sL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F 365 (437)
.+..++...+.+.-+..--+.=.++ |..++|+.+|++ ..-+...+..+..+|.|... +..|+.+-
T Consensus 9 ~~~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vS-r~tvr~al~~L~~~Gli~~~--~~~G~~V~ 74 (113)
T 3tqn_A 9 PIYQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQIN-PLTVSKAYQSLLDDNVIEKR--RGLGMLVK 74 (113)
T ss_dssp CHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEe--cCCeEEEe
Confidence 3555555444443333223344678 899999999997 78899999999999987543 45666553
No 306
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=36.53 E-value=1.5e+02 Score=24.41 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=36.0
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
-.++.++||+.++++ ...+-.+|.+|...|.|.-.-|..++
T Consensus 45 ~~~~~~eLa~~l~~~-~~tvs~~v~~Le~~GlV~R~~~~~Dr 85 (151)
T 4aik_A 45 PEQSQIQLAKAIGIE-QPSLVRTLDQLEEKGLITRHTSANDR 85 (151)
T ss_dssp TTSCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CCCcHHHHHHHHCcC-HHHHHHHHHHHHhCCCeEeecCCCCC
Confidence 457779999999998 78899999999999999988887664
No 307
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=36.53 E-value=1.6e+02 Score=23.50 Aligned_cols=36 Identities=6% Similarity=0.119 Sum_probs=32.2
Q ss_pred ccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEec
Q psy9642 322 LSLADVASRVQLGTPVQAEIYILKMISQNEIYATINK 358 (437)
Q Consensus 322 IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~ 358 (437)
++..+||+.++++ ..-+-+.|..|...|.|.-.-+.
T Consensus 43 ~t~~eLa~~l~~s-~sTV~r~L~~L~~~GlV~r~~~~ 78 (123)
T 3r0a_A 43 IDTDALSKSLKLD-VSTVQRSVKKLHEKEILQRSQQN 78 (123)
T ss_dssp EEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEeeCCc
Confidence 9999999999997 78999999999999999766543
No 308
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=36.48 E-value=34 Score=28.06 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=31.4
Q ss_pred ccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEec
Q psy9642 322 LSLADVASRVQLGTPVQAEIYILKMISQNEIYATINK 358 (437)
Q Consensus 322 IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~ 358 (437)
++.++||++++++ ..++...|..++..|.|.=+-+.
T Consensus 52 ps~~~LA~~l~~s-~~~V~~~l~~Le~kGlI~~~~~~ 87 (128)
T 2vn2_A 52 PTPAELAERMTVS-AAECMEMVRRLLQKGMIAIEEHT 87 (128)
T ss_dssp CCHHHHHHTSSSC-HHHHHHHHHHHHHTTSSEECC--
T ss_pred CCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEeEE
Confidence 8999999999997 89999999999999998776554
No 309
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=36.17 E-value=89 Score=22.44 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHH
Q psy9642 299 LTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMIS 348 (437)
Q Consensus 299 Lv~~l~~~v~r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~ 348 (437)
.+..+...+.......+.-.+.-.+..+||+.++++ ...+...+..+..
T Consensus 9 ~l~~~l~~L~~~e~~vl~l~~~g~s~~eIA~~l~is-~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 9 DIRARLQTLSERERQVLSAVVAGLPNKSIAYDLDIS-PRTVEVHRANVMA 57 (79)
T ss_dssp HHHHHHHHHCHHHHHHHHHHTTTCCHHHHHHHTTSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 345555555555555555568889999999999997 6777777665543
No 310
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=36.16 E-value=1.2e+02 Score=22.75 Aligned_cols=32 Identities=13% Similarity=0.027 Sum_probs=29.8
Q ss_pred cccHHHHHHHhCCCChHH-HHHHHHHhHHcCceE
Q psy9642 321 TLSLADVASRVQLGTPVQ-AEIYILKMISQNEIY 353 (437)
Q Consensus 321 ~IsL~dIa~~l~L~~~~e-aE~~l~~mI~~G~I~ 353 (437)
.++.++||+.++++ ... +-..|..|...|.|.
T Consensus 30 ~~t~~eLa~~l~is-~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVS-EKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCC-HHHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCC-chHHHHHHHHHHHHCCCee
Confidence 69999999999998 678 899999999999998
No 311
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=35.92 E-value=89 Score=25.71 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=34.7
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
-.++.++||+.++++ ...+-.+|.+|...|.|.-.-|..++
T Consensus 50 ~~~t~~eLa~~l~~~-~~tvs~~v~~Le~~Glv~r~~~~~Dr 90 (147)
T 4b8x_A 50 GELPMSKIGERLMVH-PTSVTNTVDRLVRSGLVAKRPNPNDG 90 (147)
T ss_dssp GEEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHHHHHhCCCEEEeecCCcC
Confidence 359999999999998 78899999999999999988887654
No 312
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=34.39 E-value=6.4e+02 Score=29.74 Aligned_cols=58 Identities=12% Similarity=0.008 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q psy9642 144 TSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT 215 (437)
Q Consensus 144 T~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~ 215 (437)
..+|..+.+..+..+.|..|+.-..+. +....++--|..+...++|++|.++|..|..
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA--------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA--------------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 557889999999999999996654221 2344455678888888999999999999886
No 313
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=34.32 E-value=1.1e+02 Score=28.01 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=39.5
Q ss_pred HhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEcc
Q psy9642 317 KTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFND 367 (437)
Q Consensus 317 k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~ 367 (437)
-..-..+.++||..++++ +.+++..+.+|...|-+. ++ .+|.|...+
T Consensus 174 l~~~~~t~~~la~~~~l~-~~~V~~~l~~L~~~~~v~-~~--~~~~~~~~~ 220 (232)
T 2qlz_A 174 LLNGRATVEELSDRLNLK-EREVREKISEMARFVPVK-II--NDNTVVLDE 220 (232)
T ss_dssp HHSSEEEHHHHHHHHTCC-HHHHHHHHHHHTTTSCEE-EE--TTTEEEECH
T ss_pred HhcCCCCHHHHHHHhCcC-HHHHHHHHHHHHhcCCeE-Ee--cCCeEEecH
Confidence 345679999999999998 899999999999999988 44 477777653
No 314
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=34.21 E-value=1.9e+02 Score=23.49 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEcc
Q psy9642 296 NTGLTKQIVASLYKNNIKRLTKTFLTL-SLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFND 367 (437)
Q Consensus 296 n~~Lv~~l~~~v~r~~I~~l~k~Ys~I-sL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~ 367 (437)
+..+.+|+.+.+.+.-+..--+.=.+| |..++|+.+|++ ..-+..-+..+..+|.|..+ +..|+.+-..
T Consensus 12 ~~PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVS-r~tVReAl~~L~~eGlv~~~--~g~G~~V~~~ 81 (134)
T 4ham_A 12 QLPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVN-PNTVSKAYQELERQEVIITV--KGKGTFIANQ 81 (134)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCC-HHHHHHHHHHHHHCCcEEEE--cCcEEEEeCC
Confidence 345777777665555444344555789 789999999998 78889999999999998654 5567766443
No 315
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=34.15 E-value=55 Score=23.43 Aligned_cols=32 Identities=6% Similarity=0.018 Sum_probs=29.2
Q ss_pred cccHHHHHHHhCCCChHHHHHHHHHhHHcCceE
Q psy9642 321 TLSLADVASRVQLGTPVQAEIYILKMISQNEIY 353 (437)
Q Consensus 321 ~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~ 353 (437)
-|.++++++..|++ .+++-..+.++-+.|.|.
T Consensus 25 ildI~~~a~kygV~-kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 25 FLDIEHFSKVYGVE-KQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp EEEHHHHHHHHCCC-HHHHHHHHHHHHHTTSEE
T ss_pred EEeHHHHHHHhCCC-HHHHHHHHHHHHHCCCee
Confidence 47899999999998 799999999999999885
No 316
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=34.06 E-value=71 Score=24.38 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=46.0
Q ss_pred HHHHHhhhCCCCcchHHHHHHHHHhCCC---CcchhhHHHHHHHHHHHhCCchHHHhhhhHhhh
Q psy9642 112 YTKTVMDLKTPQRGIPLIQTAIKKIQTS---DSQLTSLHSDLCQLCLLAQNFKPALEFLDVDIT 172 (437)
Q Consensus 112 ~~~~~~~~~~~~~~i~~l~~ai~rl~~~---~~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~ 172 (437)
+...+-+.+..-.++.-++.|+.+.++. +.....++..+...+...+++..|+....+-+.
T Consensus 11 lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444445566677888899999888554 235567888899999999999999998877654
No 317
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=34.02 E-value=1.5e+02 Score=30.03 Aligned_cols=62 Identities=10% Similarity=0.091 Sum_probs=45.4
Q ss_pred HHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q psy9642 154 CLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITT 216 (437)
Q Consensus 154 ~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~~ 216 (437)
....+.|..|+++..+-+.- ....-+-+..+.+.-+.--|.+|..+++|++|..+++.++..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~-~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i 380 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEK-QEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG 380 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHH-HTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44678899998887664432 221112244568888899999999999999999999988763
No 318
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=33.93 E-value=50 Score=26.73 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=33.6
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEec
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINK 358 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~ 358 (437)
..++.++||+.++++ ...+-..|..|...|.|.-.-+.
T Consensus 53 ~~~~~~~la~~l~~~-~~tvs~~l~~L~~~glv~r~~~~ 90 (147)
T 1z91_A 53 ETLTVKKMGEQLYLD-SGTLTPMLKRMEQQGLITRKRSE 90 (147)
T ss_dssp SEEEHHHHHHTTTCC-HHHHHHHHHHHHHHTSEECCBCS
T ss_pred CCCCHHHHHHHHCCC-cCcHHHHHHHHHHCCCEEeccCC
Confidence 479999999999997 78899999999999999776654
No 319
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=33.78 E-value=65 Score=28.50 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=34.0
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
-.++..+||+.++++ ...+-.+|..|...|.|.-.-+..++
T Consensus 61 ~~~t~~eLa~~l~i~-~stvs~~l~~Le~~GlV~r~~~~~Dr 101 (207)
T 2fxa_A 61 NGASISEIAKFGVMH-VSTAFNFSKKLEERGYLRFSKRLNDK 101 (207)
T ss_dssp TSEEHHHHHHHTTCC-HHHHHHHHHHHHHHTSEEEECC----
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 579999999999997 78899999999999999888776543
No 320
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=33.65 E-value=53 Score=26.89 Aligned_cols=36 Identities=6% Similarity=0.179 Sum_probs=32.5
Q ss_pred hhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE
Q psy9642 318 TFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYA 354 (437)
Q Consensus 318 ~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A 354 (437)
....++.++||+.++++ ...+-..|..|...|.|.-
T Consensus 48 ~~~~~t~~eLa~~l~~~-~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVN-KAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHSCBCHHHHHHHHCSC-SSHHHHHHHHHHHTTSEEC
T ss_pred HcCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEe
Confidence 45789999999999998 5788899999999999986
No 321
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=33.55 E-value=71 Score=25.74 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=38.8
Q ss_pred HHHHHHHhhccccHHHHHHHh--CCCChHHHHHHHHHhHHcCceEEEEecCCCEEEE
Q psy9642 311 NIKRLTKTFLTLSLADVASRV--QLGTPVQAEIYILKMISQNEIYATINKKDGMVVF 365 (437)
Q Consensus 311 ~I~~l~k~Ys~IsL~dIa~~l--~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F 365 (437)
.|..+-+...+++.++||+.+ +++ ...+.+.|..+.+.|.|... +.|+...
T Consensus 17 ~IL~~L~~~g~~s~~eLA~~l~~giS-~~aVs~rL~~Le~~GLV~~~---~rg~Y~L 69 (111)
T 3b73_A 17 RILEIIHEEGNGSPKELEDRDEIRIS-KSSVSRRLKKLADHDLLQPL---ANGVYVI 69 (111)
T ss_dssp HHHHHHHHHSCBCHHHHHTSTTCCSC-HHHHHHHHHHHHHTTSEEEC---STTCEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCEEec---CCceEEE
Confidence 333333445689999999999 887 78999999999999999873 4453333
No 322
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=32.83 E-value=71 Score=25.90 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEc
Q psy9642 296 NTGLTKQIVASLYKNNIKRLTKTFLTL-SLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFN 366 (437)
Q Consensus 296 n~~Lv~~l~~~v~r~~I~~l~k~Ys~I-sL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~ 366 (437)
...+..++...+.+.-+..--+.=.++ |..+||+.+|++ ..-+..-+..+..+|.|... +..|+.+-.
T Consensus 11 ~~~~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vS-r~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 79 (125)
T 3neu_A 11 DKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVN-PNTVSRAYQELERAGYIYAK--RGMGSFVTS 79 (125)
T ss_dssp SSCHHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCeEEEe--cCCEEEEec
Confidence 345666666555554433333445688 599999999997 78899999999999988654 446665543
No 323
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.77 E-value=1.3e+02 Score=21.87 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=34.5
Q ss_pred ccccHHHHHHHh-----CCCChHHHHHHHHHhHHcCceEEEEecCCCEEEE
Q psy9642 320 LTLSLADVASRV-----QLGTPVQAEIYILKMISQNEIYATINKKDGMVVF 365 (437)
Q Consensus 320 s~IsL~dIa~~l-----~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F 365 (437)
..++..+|++.+ +++ ..-+-..|..|.+.|.|.- +..++|...|
T Consensus 32 ~~~s~~el~~~l~~~~~~is-~~TVyR~L~~L~~~Glv~~-~~~~~~~~~y 80 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIG-LATVYRVLNQFDDAGIVTR-HNFEGGKSVF 80 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHTSEEE-EECGGGCEEE
T ss_pred CCCCHHHHHHHHHHhCCCCC-HhhHHHHHHHHHHCCCeEE-EeeCCCceEe
Confidence 369999999999 886 7889999999999999874 3433444444
No 324
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=31.97 E-value=39 Score=27.65 Aligned_cols=31 Identities=13% Similarity=0.075 Sum_probs=28.8
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCc
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNE 351 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~ 351 (437)
..+++.+||+.-||+ ...++.++.+.+.+|.
T Consensus 31 ~G~sleeIA~~R~L~-~~TI~~Hl~~~v~~G~ 61 (122)
T 3iuo_A 31 RKVALDDIAVSHGLD-FPELLSEVETIVYSGT 61 (122)
T ss_dssp TTCCHHHHHHHTTCC-HHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHcCCC-HHHHHHHHHHHHHcCC
Confidence 568999999999998 8999999999999995
No 325
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=31.72 E-value=1.7e+02 Score=22.21 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=33.1
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEec
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINK 358 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~ 358 (437)
...+..+|++.+|++ ...+-.+|..|...|.|..+-+.
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~~L~~~Glv~~~~~g 72 (102)
T 3pqk_A 35 GEFSVGELEQQIGIG-QPTLSQQLGVLRESGIVETRRNI 72 (102)
T ss_dssp CCBCHHHHHHHHTCC-TTHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEeC
Confidence 568999999999998 67899999999999999876543
No 326
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=31.65 E-value=71 Score=24.11 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHH-hhccccHHHHHHHhCCCChHHHHHHHHHhH
Q psy9642 300 TKQIVASLYKNNIKRLTK-TFLTLSLADVASRVQLGTPVQAEIYILKMI 347 (437)
Q Consensus 300 v~~l~~~v~r~~I~~l~k-~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI 347 (437)
+.+++..+....-..+.. ++.-.+..+||+.+|++ ...|...+....
T Consensus 31 l~~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~lgis-~~tV~~~l~ra~ 78 (92)
T 3hug_A 31 IADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIA-EGTVKSRLHYAV 78 (92)
T ss_dssp HHHHHHTSCHHHHHHHHHHHTSCCCHHHHHHHHTSC-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 344444444444444444 56789999999999998 666766655443
No 327
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=30.96 E-value=46 Score=27.16 Aligned_cols=41 Identities=10% Similarity=0.012 Sum_probs=26.7
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
-.++.++||+.++++ ...+-..|.+|...|.|.-.-|..++
T Consensus 56 ~~~t~~eLa~~l~~~-~~~vs~~l~~L~~~Glv~r~~~~~Dr 96 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRR-GASITSMLQGLEKKGYIERRIPENNA 96 (148)
T ss_dssp TCCCHHHHHHC-------CHHHHHHHHHHTTSBCCC------
T ss_pred CCCCHHHHHHHHCCC-hhHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 579999999999998 67888999999999999877665544
No 328
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=29.66 E-value=1.4e+02 Score=23.39 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=31.5
Q ss_pred ccHHHHHHHh-CCCChHHHHHHHHHhHHcCceEEEEe
Q psy9642 322 LSLADVASRV-QLGTPVQAEIYILKMISQNEIYATIN 357 (437)
Q Consensus 322 IsL~dIa~~l-~L~~~~eaE~~l~~mI~~G~I~A~Id 357 (437)
++..+|++.+ |++ ..-+-..|..|.+.|-|.-+.+
T Consensus 43 ~~~~eL~~~l~gis-~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 43 QNFNDIRSSIPGIS-STILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp BCHHHHHHTSTTCC-HHHHHHHHHHHHHTTSEEEEES
T ss_pred CCHHHHHHHccCCC-HHHHHHHHHHHHHCCCEEEeec
Confidence 5599999999 898 7888899999999999988776
No 329
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=29.50 E-value=3.2e+02 Score=25.59 Aligned_cols=121 Identities=16% Similarity=0.118 Sum_probs=72.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHh---CCchHHHhhhhHhhhh
Q psy9642 97 QIRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLA---QNFKPALEFLDVDITT 173 (437)
Q Consensus 97 Qir~a~~~~~~l~~~~~~~~~~~~~~~~~i~~l~~ai~rl~~~~~~lT~~h~~l~~l~L~~---~~y~~Al~il~~~I~~ 173 (437)
||-|- +.|..+...+.........+.+++..... ++.++ |+..|.-+.. +.+|.. ..+..++.+.+.-+..
T Consensus 25 ~i~y~-~~y~~~~~~~~a~~~~~e~s~~aL~~t~~-~L~~n--P~~~taWn~R--~~~L~~l~~~~~~eeL~~~~~~L~~ 98 (306)
T 3dra_A 25 QILYD-EDYKQIMGLLLALMKAEEYSERALHITEL-GINEL--ASHYTIWIYR--FNILKNLPNRNLYDELDWCEEIALD 98 (306)
T ss_dssp CCCCC-HHHHHHHHHHHHHHHTTCCSHHHHHHHHH-HHHHC--TTCHHHHHHH--HHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred eeeeC-HHHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHC--cHHHHHHHHH--HHHHHHcccccHHHHHHHHHHHHHH
Confidence 44443 56666666664444433333455555444 44555 4666655554 333332 3799999998887653
Q ss_pred hhcCCCCCChHhhHHHHHHHHHHH----HHH---hhHHHHHHHHHHHhc-ccccccCHHHHHHHHHHHHHH
Q psy9642 174 IANEGPQFDTKYFLQYFYYGGMIY----LAL---KNYERALYFFEVIIT-TPALAVSHIMLEGYKKYLLIY 236 (437)
Q Consensus 174 ~~~~~~~~~~~~~l~Y~Yy~G~I~----~~~---k~y~~A~~~~~~ai~-~P~~~~s~i~vea~Kk~iLv~ 236 (437)
. ++ ...-.+|.|.+. ... ++|.++..++..++. .|.+- ..=.++.|++-.
T Consensus 99 -n-------Pk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny----~aW~~R~~vl~~ 156 (306)
T 3dra_A 99 -N-------EK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH----HVWSYRKWLVDT 156 (306)
T ss_dssp -C-------TT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHH
T ss_pred -C-------cc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Confidence 2 22 344556777777 555 689999999999998 67652 222466777643
No 330
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=29.34 E-value=60 Score=26.52 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=31.1
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
..++.++||+.++++ ...+-.+|.+|...|.|.-.-+..++
T Consensus 53 ~~~t~~eLa~~l~i~-~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (150)
T 3fm5_A 53 EGVNQRGVAATMGLD-PSQIVGLVDELEERGLVVRTLDPSDR 93 (150)
T ss_dssp TCCCSHHHHHHHTCC-HHHHHHHHHHHHTTTSEEC-------
T ss_pred CCcCHHHHHHHHCCC-HhHHHHHHHHHHHCCCEEeeCCcccc
Confidence 368999999999998 78899999999999999877665544
No 331
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=29.15 E-value=47 Score=27.39 Aligned_cols=43 Identities=9% Similarity=0.178 Sum_probs=33.0
Q ss_pred HhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 317 KTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 317 k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
.....++.++||+.++++ ...+-..|.+|...|.|.-.-+..+
T Consensus 58 ~~~~~~~~~ela~~l~i~-~~tvs~~l~~Le~~Gli~r~~~~~d 100 (160)
T 3boq_A 58 RNPDGLSMGKLSGALKVT-NGNVSGLVNRLIKDGMVVKAMSADD 100 (160)
T ss_dssp HCTTCEEHHHHHHHCSSC-CSCHHHHHHHHHHHTSEEEC-----
T ss_pred HcCCCCCHHHHHHHHCCC-hhhHHHHHHHHHHCCCEEeecCCCC
Confidence 344679999999999998 5788899999999999987665433
No 332
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=28.76 E-value=2.8e+02 Score=26.41 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=61.8
Q ss_pred hCCCCcchHHHHHHHHHhCCCC-cchhhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHH
Q psy9642 119 LKTPQRGIPLIQTAIKKIQTSD-SQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIY 197 (437)
Q Consensus 119 ~~~~~~~i~~l~~ai~rl~~~~-~~lT~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~ 197 (437)
.+.+--++..+... +.+.+ ..-.......+++++..+..+.|...+.+-.- ..+ ..+...+.+...+..|.|.
T Consensus 113 ~g~~eeAL~~l~~~---i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-~~~--d~~~~~d~~l~~Laea~v~ 186 (310)
T 3mv2_B 113 LGDLDKSLETCVEG---IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-AIE--DTVSGDNEMILNLAESYIK 186 (310)
T ss_dssp HTCHHHHHHHHHHH---HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSC--HHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH---hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCc--cccccchHHHHHHHHHHHH
Confidence 45555555555544 33333 23444778889999999999999888866321 100 0001246777777788888
Q ss_pred HHHh--hHHHHHHHHHHHhccc
Q psy9642 198 LALK--NYERALYFFEVIITTP 217 (437)
Q Consensus 198 ~~~k--~y~~A~~~~~~ai~~P 217 (437)
+..+ +|.+|+..|+.....+
T Consensus 187 l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 187 FATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp HHHTCSTTTHHHHHHHHHHTTS
T ss_pred HHhCCccHHHHHHHHHHHHHhC
Confidence 8887 9999999999988743
No 333
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=28.73 E-value=1.7e+02 Score=26.87 Aligned_cols=46 Identities=13% Similarity=0.037 Sum_probs=36.9
Q ss_pred hhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEc
Q psy9642 318 TFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFN 366 (437)
Q Consensus 318 ~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~ 366 (437)
....+++++||+.++++ ..-+-+.|..|.+.|.|.-. ...+.+...
T Consensus 163 ~~~~~s~~eLA~~lgls-ksTv~r~L~~Le~~GlV~r~--~r~~~~~LT 208 (244)
T 2wte_A 163 ETKGTGITELAKMLDKS-EKTLINKIAELKKFGILTQK--GKDRKVELN 208 (244)
T ss_dssp HHTCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE--TTTTEEEEC
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEe--CCccEEEEC
Confidence 34679999999999998 78899999999999999775 334444443
No 334
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=28.18 E-value=98 Score=24.26 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-----ccccHHHHHHHhCCCChHHHHHHHHHhH
Q psy9642 299 LTKQIVASLYKNNIKRLTKTF-----LTLSLADVASRVQLGTPVQAEIYILKMI 347 (437)
Q Consensus 299 Lv~~l~~~v~r~~I~~l~k~Y-----s~IsL~dIa~~l~L~~~~eaE~~l~~mI 347 (437)
.+.+++..+....=..+...| .-.|+.+||+.+|++ ..-|...+.+.+
T Consensus 12 ~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS-~~tVr~~~~rAl 64 (99)
T 3t72_q 12 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT-RERIRQIEAKAL 64 (99)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 345555555544444444455 479999999999997 667766655444
No 335
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=28.17 E-value=60 Score=31.62 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=35.1
Q ss_pred HHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE
Q psy9642 312 IKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYA 354 (437)
Q Consensus 312 I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A 354 (437)
|.++-. ...+|-++||+.++|+ ..-+-.++.+|+++|.|.-
T Consensus 25 il~~l~-~~~~sr~~la~~~gls-~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 25 ILKRIM-KSPVSRVELAEELGLT-KTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp SHHHHH-HSCBCHHHHHHHHTCC-HHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHH-cCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEe
Confidence 344445 7889999999999998 7899999999999999865
No 336
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=28.03 E-value=2.1e+02 Score=26.97 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=55.4
Q ss_pred HHHHHHhCCch-HHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHh--hHHHHHHHHHHHhc-ccccccCHHHH
Q psy9642 151 CQLCLLAQNFK-PALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALK--NYERALYFFEVIIT-TPALAVSHIML 226 (437)
Q Consensus 151 ~~l~L~~~~y~-~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k--~y~~A~~~~~~ai~-~P~~~~s~i~v 226 (437)
++..+.++.|. .|+...++-|. ++ | ++....+|.|.+...++ +|++|..++..++. .|... .+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~-~n-------P-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y----~a 105 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGIN-EL-------A-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY----QI 105 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHH-HC-------T-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC----HH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH-HC-------c-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH----HH
Confidence 45556777775 78777777654 22 2 36777889999999998 99999999999998 78752 22
Q ss_pred HHHHHHHHHHHHH
Q psy9642 227 EGYKKYLLIYLIV 239 (437)
Q Consensus 227 ea~Kk~iLv~Lil 239 (437)
=.+++|+|-.++.
T Consensus 106 W~~R~~iL~~~~~ 118 (306)
T 3dra_A 106 WNYRQLIIGQIME 118 (306)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2467888866654
No 337
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=27.71 E-value=1.1e+02 Score=24.97 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=36.0
Q ss_pred hhccc-cHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEE
Q psy9642 318 TFLTL-SLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVF 365 (437)
Q Consensus 318 ~Ys~I-sL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F 365 (437)
.=.+| |..++|+.+|++ ..-+..-+..+..+|.|.. .+..|+.+-
T Consensus 24 ~G~~LPse~~La~~~gvS-r~tVr~Al~~L~~~Gli~~--~~g~G~~V~ 69 (129)
T 2ek5_A 24 IDQRVPSTNELAAFHRIN-PATARNGLTLLVEAGILYK--KRGIGMFVS 69 (129)
T ss_dssp TTSCBCCHHHHHHHTTCC-HHHHHHHHHHHHTTTSEEE--ETTTEEEEC
T ss_pred CCCcCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEE--ecCCEEEEe
Confidence 34578 899999999997 7889999999999999854 455676553
No 338
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=27.59 E-value=95 Score=23.39 Aligned_cols=37 Identities=5% Similarity=0.173 Sum_probs=32.2
Q ss_pred ccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecC
Q psy9642 322 LSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKK 359 (437)
Q Consensus 322 IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~ 359 (437)
.+..+||++||++ -.++-+.|-+|-.+|.+.-.=+.+
T Consensus 30 ~Ta~~IAkkLg~s-K~~vNr~LY~L~kkG~V~~~~~~P 66 (75)
T 1sfu_A 30 TTAISLSNRLKIN-KKKINQQLYKLQKEDTVKMVPSNP 66 (75)
T ss_dssp ECHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEECCSS
T ss_pred hHHHHHHHHHCCC-HHHHHHHHHHHHHCCCEecCCCCC
Confidence 8899999999998 789999999999999987764443
No 339
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=27.45 E-value=1.5e+02 Score=29.41 Aligned_cols=61 Identities=15% Similarity=0.083 Sum_probs=43.0
Q ss_pred HHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q psy9642 154 CLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT 215 (437)
Q Consensus 154 ~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~ 215 (437)
+...+.|+.|++...+-+.. ..+.-.-+..+.+.-+.-.|.+|..+++|++|..+++.++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~-~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISS-NSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTC-SSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHh-ccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44667888887776554331 11111223456888888899999999999999999988765
No 340
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=27.40 E-value=1.1e+02 Score=26.29 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=35.8
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEcc
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFND 367 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~ 367 (437)
..++..+||+.+|++ .+.+-+.+.+|..+|.|. ++ .|.+...|
T Consensus 168 ~~~t~~~lA~~lg~s-r~tvsR~l~~L~~~g~I~--~~--~~~i~i~d 210 (220)
T 3dv8_A 168 LKITHETIANHLGSH-REVITRMLRYFQVEGLVK--LS--RGKITILD 210 (220)
T ss_dssp ECCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE--EE--TTEEEESC
T ss_pred ecCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE--eC--CCEEEEeC
Confidence 378999999999997 889999999999999985 33 56666664
No 341
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=26.99 E-value=1.8e+02 Score=22.42 Aligned_cols=41 Identities=2% Similarity=-0.099 Sum_probs=35.3
Q ss_pred hccccHHHHHHHhC-CCChHHHHHHHHHhHHcCceEEEEecCC
Q psy9642 319 FLTLSLADVASRVQ-LGTPVQAEIYILKMISQNEIYATINKKD 360 (437)
Q Consensus 319 Ys~IsL~dIa~~l~-L~~~~eaE~~l~~mI~~G~I~A~Id~~~ 360 (437)
.-.++..+|++.++ ++ ...+-..|..|.+.|.|.-+.+..+
T Consensus 36 ~~~~~~~eL~~~l~gis-~~~ls~~L~~Le~~GlV~r~~~~~d 77 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGIS-EKMLIDELKFLCGKGLIKKKQYPEV 77 (107)
T ss_dssp TSCEEHHHHHHHSTTCC-HHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred hCCcCHHHHHHHcccCC-HHHHHHHHHHHHHCCCEEEeecCCC
Confidence 45689999999995 97 7888999999999999998887644
No 342
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=26.87 E-value=2.7e+02 Score=22.94 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=34.4
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEE
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMV 363 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v 363 (437)
..++..+||+.++++ ...+-.+|..|...|.|.-.-+..++-.
T Consensus 61 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~DrR~ 103 (168)
T 3u2r_A 61 EGMATLQIADRLISR-APDITRLIDRLDDRGLVLRTRKPENRRV 103 (168)
T ss_dssp SCEEHHHHHHHC----CTHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCEeecCCCCCCCe
Confidence 379999999999998 5788899999999999998888766533
No 343
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=26.78 E-value=1.2e+02 Score=24.31 Aligned_cols=59 Identities=15% Similarity=0.035 Sum_probs=42.0
Q ss_pred HHHHHHHHHH----hCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHH----HhhHHHHHHHHHHHhcc
Q psy9642 147 HSDLCQLCLL----AQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLA----LKNYERALYFFEVIITT 216 (437)
Q Consensus 147 h~~l~~l~L~----~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~----~k~y~~A~~~~~~ai~~ 216 (437)
+..+..++.. .+++..|+..+.+-... ....=.|.-|.+|.. .+|+.+|.++|+.+...
T Consensus 60 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 60 CRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 4455556666 68899998888776431 122334567777777 79999999999999874
No 344
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=26.77 E-value=82 Score=27.30 Aligned_cols=44 Identities=11% Similarity=0.119 Sum_probs=35.5
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEccC
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDN 368 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~ 368 (437)
..++..+||+.+|++ .+.+-+.+.+|..+|.|.- ..|.+...|.
T Consensus 177 ~~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~~----~~~~i~i~d~ 220 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQ-PETFSRIMHRLGDEGIIHL----DGREISILDR 220 (227)
T ss_dssp CCSCTHHHHHHTTSC-HHHHHHHHHHHHHHTSEEE----SSSCEEESCS
T ss_pred ecCCHHHHHHHhCCC-HHHHHHHHHHHHHCCcEEe----cCCEEEEeCH
Confidence 457889999999997 8899999999999999853 3455666554
No 345
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=26.65 E-value=1.1e+02 Score=23.93 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=35.2
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEcc
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFND 367 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~ 367 (437)
..+++.+||+.++++ ...+-..|..|...|.|.-.-+ ...+.+..
T Consensus 44 ~~~s~~ela~~l~is-~stvsr~l~~Le~~Glv~~~~~--~r~~~~~~ 88 (119)
T 2lkp_A 44 GPLPVTDLAEAIGME-QSAVSHQLRVLRNLGLVVGDRA--GRSIVYSL 88 (119)
T ss_dssp CCCCHHHHHHHHSSC-HHHHHHHHHHHHHHCSEEEEEE--TTEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEec--CCEEEEEE
Confidence 479999999999997 7889999999999999865433 34444443
No 346
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=26.31 E-value=1.3e+02 Score=28.83 Aligned_cols=77 Identities=8% Similarity=-0.045 Sum_probs=54.9
Q ss_pred HHhCCCCcchhhHHHHHHHHHHH-----hCCchHHHhhhhHhhhhhhcCCCCCChHh-hHHHHHHHHHHHHHHhhHHHHH
Q psy9642 134 KKIQTSDSQLTSLHSDLCQLCLL-----AQNFKPALEFLDVDITTIANEGPQFDTKY-FLQYFYYGGMIYLALKNYERAL 207 (437)
Q Consensus 134 ~rl~~~~~~lT~~h~~l~~l~L~-----~~~y~~Al~il~~~I~~~~~~~~~~~~~~-~l~Y~Yy~G~I~~~~k~y~~A~ 207 (437)
..+||+-. --+.|..+..++.. -++.+.|...+++-+.- ++.. ..-++||+-......+|+.+|.
T Consensus 190 leLDP~~~-~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~~v~YA~~l~~~~gd~~~a~ 260 (301)
T 3u64_A 190 CDLWPSYQ-EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDHHITYADALCIPLNNRAGFD 260 (301)
T ss_dssp HHHCTTHH-HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHhCCCcc-cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence 45666411 23578888888888 48999998888887652 3332 4455566655555569999999
Q ss_pred HHHHHHhccccc
Q psy9642 208 YFFEVIITTPAL 219 (437)
Q Consensus 208 ~~~~~ai~~P~~ 219 (437)
++|+.|+..|..
T Consensus 261 ~~L~kAL~a~p~ 272 (301)
T 3u64_A 261 EALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHCCGG
T ss_pred HHHHHHHcCCCC
Confidence 999999997765
No 347
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=26.22 E-value=1.8e+02 Score=24.09 Aligned_cols=42 Identities=5% Similarity=0.007 Sum_probs=36.7
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCC
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDG 361 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g 361 (437)
...++.++|++.++++ ..-+-..|..|.+.|.|.-+.+..++
T Consensus 35 ~g~~~~~eLa~~lgis-~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLA-KNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCC-HHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 4679999999999998 67888999999999999988876554
No 348
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=25.44 E-value=1.9e+02 Score=28.31 Aligned_cols=26 Identities=15% Similarity=0.177 Sum_probs=13.0
Q ss_pred HHHHHHHHHH----HhhHHHHHHHHHHHhc
Q psy9642 190 FYYGGMIYLA----LKNYERALYFFEVIIT 215 (437)
Q Consensus 190 ~Yy~G~I~~~----~k~y~~A~~~~~~ai~ 215 (437)
.+.-|.+|.. .+|+.+|.++|+.+..
T Consensus 150 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 150 QQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 3344444444 4455555555555554
No 349
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=25.20 E-value=2.3e+02 Score=21.69 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=43.2
Q ss_pred ccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy9642 322 LSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDNPQRFNNPLTFAQIESNIRACMHLDGKF 395 (437)
Q Consensus 322 IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~e~~~~l~~~i~~~~~L~~~~ 395 (437)
++..+||..++++ +..+..++..+...|-|.-. .++ +...+. ..++++.+..-+..+..+.+.-
T Consensus 21 ~~~t~La~~~~ls-~~~~~~~l~~L~~~GLI~~~---~~~-~~LT~k-----G~~~l~~l~~~~~~l~~l~~~e 84 (95)
T 1r7j_A 21 SPKTRIMYGANLS-YALTGRYIKMLMDLEIIRQE---GKQ-YMLTKK-----GEELLEDIRKFNEMRKNMDQLK 84 (95)
T ss_dssp BCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE---TTE-EEECHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCcC-HHHHHHHHHHHHHCCCeEEE---CCe-eEEChh-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 89999999999999998765 233 222211 2245555555554444444433
No 350
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=24.87 E-value=65 Score=27.50 Aligned_cols=43 Identities=7% Similarity=0.045 Sum_probs=34.4
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEcc
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFND 367 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~ 367 (437)
..++..+||..+|++ .+.+-+.+.+|..+|.|.- + .+.+...|
T Consensus 163 ~~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~~--~--~~~i~i~d 205 (207)
T 2oz6_A 163 IKITRQEIGRIVGCS-REMVGRVLKSLEEQGLVHV--K--GKTMVVFG 205 (207)
T ss_dssp EECCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEE--E--TTEEEEET
T ss_pred cccCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEe--c--CCEEEEEe
Confidence 368999999999997 8899999999999999853 2 35555544
No 351
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=24.36 E-value=1.2e+02 Score=24.49 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=31.0
Q ss_pred HHHHHH-HHHHHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhH
Q psy9642 300 TKQIVA-SLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMI 347 (437)
Q Consensus 300 v~~l~~-~v~r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI 347 (437)
+.+++. .+....-..+..++.-.|..+||+.+|++ ...+...+....
T Consensus 102 l~~~l~~~L~~~~r~v~~~~~~g~s~~EIA~~lgis-~~tV~~~~~ra~ 149 (164)
T 3mzy_A 102 FKKFSENNFSKFEKEVLTYLIRGYSYREIATILSKN-LKSIDNTIQRIR 149 (164)
T ss_dssp HHHHHHHHSCHHHHHHHHHHTTTCCHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 344444 44444444444578899999999999997 666666555443
No 352
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=24.10 E-value=1.8e+02 Score=23.01 Aligned_cols=37 Identities=11% Similarity=-0.033 Sum_probs=32.3
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEe
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATIN 357 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id 357 (437)
...+..+||+.++++ ...+-.++..|...|.|...-+
T Consensus 33 ~~~~~~eLa~~lgis-~stvs~~L~~L~~~GlV~~~~~ 69 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLT-RSNVSNHLSCLRGCGLVVATYE 69 (118)
T ss_dssp TCCSTTTHHHHHSSC-HHHHHHHHHHHTTTTSEEEEEC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCceEEEEE
Confidence 457899999999998 7889999999999999987654
No 353
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=23.79 E-value=1.7e+02 Score=25.39 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=29.8
Q ss_pred cccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEE
Q psy9642 321 TLSLADVASRVQLGTPVQAEIYILKMISQNEIYAT 355 (437)
Q Consensus 321 ~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~ 355 (437)
..|.++||+.+|+++ .-+...|..|-.+|.|.-.
T Consensus 24 ~~s~~eia~~lgl~~-~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 24 PPSVREIARRFRITP-RGALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCCHHHHHHHHTSCH-HHHHHHHHHHHHTTSEECC
T ss_pred CCCHHHHHHHcCCCc-HHHHHHHHHHHHCCCEEec
Confidence 489999999999995 4799999999999998644
No 354
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=23.68 E-value=70 Score=27.50 Aligned_cols=43 Identities=7% Similarity=0.135 Sum_probs=36.1
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEcc
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFND 367 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~ 367 (437)
..++..+||..+|++ .+.+-+.+.+|..+|.|. ++ .|.+...|
T Consensus 162 ~~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~--~~--~~~i~i~d 204 (216)
T 4ev0_A 162 FQIRHHELAALAGTS-RETVSRVLHALAEEGVVR--LG--PGTVEVRE 204 (216)
T ss_dssp EECCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE--EE--TTEEEESC
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE--ec--CCEEEEeC
Confidence 568999999999997 889999999999999995 33 56676664
No 355
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=23.66 E-value=1.4e+02 Score=25.75 Aligned_cols=44 Identities=20% Similarity=0.091 Sum_probs=33.7
Q ss_pred HHHHHHHHhhc-cccHHHHHHHhCCCChHHHHHHHHHhHHcCc-eEE
Q psy9642 310 NNIKRLTKTFL-TLSLADVASRVQLGTPVQAEIYILKMISQNE-IYA 354 (437)
Q Consensus 310 ~~I~~l~k~Ys-~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~-I~A 354 (437)
..|..+-+.-. .++.++||+.++++ ..-+.+.|..|-..|. |.+
T Consensus 24 ~~Il~~L~~~~~~~s~~eLa~~l~vS-~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 24 KSIVRILERSKEPVSGAQLAEELSVS-RQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHTSC-HHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEE
Confidence 33444433323 49999999999998 7889999999999998 765
No 356
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=23.31 E-value=45 Score=28.56 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=30.2
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEc
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFN 366 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~ 366 (437)
.-+++.++|+.||++ . .-|-+||.+|+|-|.=. ++..+|.
T Consensus 30 ~~LTv~EVAe~LgVs-~----srV~~LIr~G~L~AVr~--Gr~~rVP 69 (148)
T 2kfs_A 30 PTYDLPRVAELLGVP-V----SKVAQQLREGHLVAVRR--AGGVVIP 69 (148)
T ss_dssp CEEEHHHHHHHHTCC-H----HHHHHHHHTTSCCCEEE--TTEEEEE
T ss_pred ceEcHHHHHHHhCCC-H----HHHHHHHHCCCceEEEE--CCEEEec
Confidence 358999999999998 4 46778999999877433 3666553
No 357
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=22.94 E-value=1.8e+02 Score=23.85 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=27.9
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCE
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGM 362 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~ 362 (437)
..++.++||+.++++ ...+-.+|..|...|-|. +.+..++-
T Consensus 51 ~~~t~~eLa~~l~~~-~~tvsr~v~~Le~~glVr-~~~~~DrR 91 (148)
T 4fx0_A 51 IDLTMSELAARIGVE-RTTLTRNLEVMRRDGLVR-VMAGADAR 91 (148)
T ss_dssp ---CHHHHHHHHTCC-HHHHHHHHHHHHHTTSBC---------
T ss_pred CCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCEE-eeCCCCCC
Confidence 358999999999998 788899999999999984 45554443
No 358
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=22.92 E-value=76 Score=27.13 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=29.7
Q ss_pred cccHHHHHHHhCCCChHHHHHHHHHhHHcCceE
Q psy9642 321 TLSLADVASRVQLGTPVQAEIYILKMISQNEIY 353 (437)
Q Consensus 321 ~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~ 353 (437)
.++-.+||..+|++ .+.+-+.+.+|.++|.|.
T Consensus 167 ~~t~~~iA~~lg~s-r~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCS-RETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCc-HHHHHHHHHHHHHCCcEE
Confidence 68899999999997 889999999999999986
No 359
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=22.79 E-value=1.3e+02 Score=21.10 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=23.6
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHH
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMIS 348 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~ 348 (437)
.-.|..+||+.+|++ ...+...+..+..
T Consensus 24 ~g~s~~eIA~~lgis-~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVT-RERIRQIEAKALR 51 (68)
T ss_dssp SCCCHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 789999999999998 7788877776654
No 360
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=22.69 E-value=1.1e+02 Score=26.32 Aligned_cols=58 Identities=9% Similarity=0.014 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHh----hHHHHHHHHHHHhc
Q psy9642 146 LHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALK----NYERALYFFEVIIT 215 (437)
Q Consensus 146 ~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k----~y~~A~~~~~~ai~ 215 (437)
.+..+..++...+++..|+..+.+-+.. ....-.|.-|.+|.. + |+.+|.++|+.+..
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQ-----------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHT-----------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 4556677788899999999888876431 123445667777777 6 89999999999965
No 361
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=22.68 E-value=5.2e+02 Score=24.89 Aligned_cols=33 Identities=6% Similarity=0.084 Sum_probs=29.1
Q ss_pred cccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE
Q psy9642 321 TLSLADVASRVQLGTPVQAEIYILKMISQNEIYA 354 (437)
Q Consensus 321 ~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A 354 (437)
.++.+++++.++++ ..-|.+.|.++++.|.|.-
T Consensus 311 ~~t~~~~~~~~gvS-~~Ta~r~L~~L~e~GiL~~ 343 (373)
T 2qc0_A 311 YCRIQNLVESGLAK-RQTASVYLKQLCDIGVLEE 343 (373)
T ss_dssp EEEHHHHHHTSSSC-HHHHHHHHHHHHHTTSCEE
T ss_pred cccHHHHHHHhCCC-HHHHHHHHHHHHHCCcEEE
Confidence 36788999999997 7899999999999999863
No 362
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=22.65 E-value=1.3e+02 Score=23.26 Aligned_cols=35 Identities=6% Similarity=0.030 Sum_probs=31.6
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEE
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYAT 355 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~ 355 (437)
..++..+||+.+|++ ...+-..+..|...|.|...
T Consensus 32 ~~~s~~eLa~~lgvs-~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 32 TEMTDEEIANQLNIK-VNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp SCBCHHHHHHTTTSC-HHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEE
Confidence 369999999999998 78999999999999998765
No 363
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=22.60 E-value=74 Score=24.40 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHc
Q psy9642 300 TKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQ 349 (437)
Q Consensus 300 v~~l~~~v~r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~ 349 (437)
+.+++..+.......+...+.-.+..+||+.++++ ..-+...+..+...
T Consensus 21 l~~~l~~Lt~~e~~vl~l~~~g~s~~eIA~~l~is-~~tV~~~l~r~~~k 69 (95)
T 3c57_A 21 MQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLA-EKTVKNYVSRLLAK 69 (95)
T ss_dssp ------CCCHHHHHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHHHHHHH
Confidence 33344444444444444458889999999999997 77787777666543
No 364
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=22.46 E-value=80 Score=27.56 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=35.6
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEcc
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFND 367 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~ 367 (437)
-..++..+||..+|++ .+.+-+.+.+|..+|.|. ++ .+.+...|
T Consensus 173 ~~~~t~~~iA~~lg~s-r~tvsR~l~~L~~~g~I~--~~--~~~i~i~d 216 (231)
T 3e97_A 173 VLPLGTQDIMARTSSS-RETVSRVLKRLEAHNILE--VS--PRSVTLLD 216 (231)
T ss_dssp EECCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE--EC--SSCEEESC
T ss_pred ecCCCHHHHHHHhCCc-HHHHHHHHHHHHHCCcEE--ec--CCEEEEeC
Confidence 3468999999999997 889999999999999985 33 45566554
No 365
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=22.46 E-value=79 Score=27.62 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=35.5
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEcc
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFND 367 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~ 367 (437)
..++-.+||..+|++ .+.+-+.+.+|.++|.|.- + .+.+...|
T Consensus 179 ~~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~~--~--~~~i~i~d 221 (232)
T 2gau_A 179 IYLSREELATLSNMT-VSNAIRTLSTFVSERMLAL--D--GKRIKIID 221 (232)
T ss_dssp CCCCHHHHHHHTTSC-HHHHHHHHHHHHHTTSEEE--E--TTEEEESC
T ss_pred cccCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEee--C--CCEEEEeC
Confidence 468999999999998 8899999999999999853 2 45666664
No 366
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=22.42 E-value=79 Score=27.50 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=34.9
Q ss_pred cccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEcc
Q psy9642 321 TLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFND 367 (437)
Q Consensus 321 ~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~ 367 (437)
.++-.+||+.+|++ .+.+-+.+.+|..+|.|.- + .+.+...|
T Consensus 177 ~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~~--~--~~~i~i~d 218 (227)
T 3d0s_A 177 DLTQEEIAQLVGAS-RETVNKALADFAHRGWIRL--E--GKSVLISD 218 (227)
T ss_dssp CCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEE--E--TTEEEESC
T ss_pred CCCHHHHHHHhCCc-HHHHHHHHHHHHHCCCEEe--c--CCEEEEcC
Confidence 57999999999998 8899999999999998853 2 46676664
No 367
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.29 E-value=1.4e+02 Score=20.14 Aligned_cols=30 Identities=7% Similarity=0.074 Sum_probs=22.8
Q ss_pred hhccccHHHHHHHhCCCChHHHHHHHHHhHH
Q psy9642 318 TFLTLSLADVASRVQLGTPVQAEIYILKMIS 348 (437)
Q Consensus 318 ~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~ 348 (437)
.+.-.+..+||+.++++ +.-+...+..+..
T Consensus 10 ~~~g~s~~eIA~~l~is-~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHIS-IKTVETHRMNMMR 39 (61)
T ss_dssp HHTSCCSHHHHHHTCSC-HHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 46678999999999997 6777776665543
No 368
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=22.00 E-value=81 Score=28.02 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=35.8
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEccC
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDN 368 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~~ 368 (437)
..++-.+||..+|++ .+.+-+.+.+|.++|.|. ++ .|.+...|.
T Consensus 192 ~~lt~~~lA~~lG~s-r~tvsR~l~~L~~~GlI~--~~--~~~i~I~d~ 235 (243)
T 3la7_A 192 LKLSHQAIAEAIGST-RVTVTRLLGDLREKKMIS--IH--KKKITVHKP 235 (243)
T ss_dssp SCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE--EE--TTEEEECC-
T ss_pred ccCCHHHHHHHHCCc-HHHHHHHHHHHHHCCCEE--Ec--CCEEEECCH
Confidence 467889999999997 889999999999999986 33 566666654
No 369
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=21.96 E-value=82 Score=26.94 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=35.6
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEcc
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFND 367 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~ 367 (437)
..++-.+||..+|++ .+.+-+.+.+|.++|.|. ++ .+.+...|
T Consensus 145 ~~~t~~~lA~~lg~s-r~tvsR~l~~L~~~g~I~--~~--~~~i~i~d 187 (202)
T 2zcw_A 145 LKATHDELAAAVGSV-RETVTKVIGELAREGYIR--SG--YGKIQLLD 187 (202)
T ss_dssp EECCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE--EE--TTEEEESC
T ss_pred cCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE--eC--CCEEEEeC
Confidence 458899999999997 889999999999999986 33 46676664
No 370
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=21.83 E-value=81 Score=27.41 Aligned_cols=43 Identities=19% Similarity=0.125 Sum_probs=34.5
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEcc
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFND 367 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~ 367 (437)
..++-.+||..+|++ .+.+-+.+.+|..+|.|. ++ .+.++..|
T Consensus 186 ~~lt~~~lA~~lg~s-r~tvsR~l~~L~~~g~I~--~~--~~~i~i~d 228 (230)
T 3iwz_A 186 LRVSRQELARLVGCS-REMAGRVLKKLQADGLLH--AR--GKTVVLYG 228 (230)
T ss_dssp EECCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE--EE--TTEEEEEC
T ss_pred cCCCHHHHHHHhCCc-HHHHHHHHHHHHHCCCEE--EC--CCEEEEee
Confidence 357899999999997 889999999999999986 33 35555543
No 371
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=21.83 E-value=2.9e+02 Score=24.83 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=35.7
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEc
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFN 366 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~ 366 (437)
-.++..+++..+|++ ..-+...|..|+.+|.+.-- ++..| +.|.
T Consensus 167 g~vt~~~la~~l~ws-~~~a~e~L~~~e~~G~l~~D-~~~eg-~~y~ 210 (218)
T 3cuq_B 167 GSLTSEEFAKLVGMS-VLLAKERLLLAEKMGHLCRD-DSVEG-LRFY 210 (218)
T ss_dssp SCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE-ESSSC-EEEE
T ss_pred CCcCHHHHHHHhCCC-HHHHHHHHHHHHHcCCEEEE-CCCCc-eEEe
Confidence 468999999999998 78999999999999987643 34456 6664
No 372
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=21.63 E-value=84 Score=27.21 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=34.4
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecC-CCEEEEcc
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKK-DGMVVFND 367 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~-~g~v~F~~ 367 (437)
..++-.+||+.+|++ .+.+-+.+.+|..+|.|. .. .+.+...|
T Consensus 166 ~~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~----~~~~~~i~i~d 209 (220)
T 2fmy_A 166 LGLNTEEIALMLGTT-RQTVSVLLNDFKKMGILE----RVNQRTLLLKD 209 (220)
T ss_dssp CSSCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE----ESSSSEEEESC
T ss_pred ccCCHHHHHHHhCCc-HHHHHHHHHHHHHCCCEE----EcCCCEEEEcC
Confidence 468899999999997 889999999999999874 22 45566554
No 373
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=21.51 E-value=20 Score=37.77 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEE
Q psy9642 309 KNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYA 354 (437)
Q Consensus 309 r~~I~~l~k~Ys~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A 354 (437)
+..|....+.+-.|+-+||+++++++ ...|..+|.+|+.+|.|..
T Consensus 518 ~~~I~~~l~~~g~it~~di~~l~~ls-~~qa~~~L~~Lv~~G~l~~ 562 (583)
T 3lmm_A 518 TNAAMLWLSEVGDLATSDLMAMCGVS-RGTAKACVDGLVDEERVVA 562 (583)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCcEEE
Confidence 34567777788899999999999998 6889999999999999854
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=21.32 E-value=1e+02 Score=34.91 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHhCCchHHHhhhhHhhhhhhcCCCCCChHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q psy9642 144 TSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIIT 215 (437)
Q Consensus 144 T~~h~~l~~l~L~~~~y~~Al~il~~~I~~~~~~~~~~~~~~~l~Y~Yy~G~I~~~~k~y~~A~~~~~~ai~ 215 (437)
+.+...+++-|+..+.|..|..++ ..++. ++ .. .|..|+++...++|++|.++|+.+-.
T Consensus 812 ~~~~~~l~~~l~~~~~~~~~~~l~-----~~~~~----~~--~~--~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 812 NDLVTELVEKLFLFKQYNACMQLI-----GWLNS----DP--IA--VYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp SCHHHHHHHHHHHHSCTTHHHHHH-----HHSCC----CH--HH--HHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred chhHHHHHHHHHHhhhHHHHHHHh-----hhccC----Cc--HH--HHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 445667777888888888775433 33432 12 22 27899999999999999999998865
No 375
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=21.24 E-value=1.6e+02 Score=26.03 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=34.1
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEc
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFN 366 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~ 366 (437)
..++-.+||..+|++ .+.+-+.+.+|..+|.|.- ..+.+...
T Consensus 176 ~~~t~~~iA~~lG~s-r~tvsR~l~~L~~~g~I~~----~~~~i~i~ 217 (250)
T 3e6c_C 176 MPLSQKSIGEITGVH-HVTVSRVLASLKRENILDK----KKNKIIVY 217 (250)
T ss_dssp CCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE----CSSEEEES
T ss_pred CCCCHHHHHHHhCCc-HHHHHHHHHHHHHCCCeEe----CCCEEEEe
Confidence 468999999999997 8899999999999998853 24455554
No 376
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=21.22 E-value=71 Score=27.21 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=35.0
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEcc
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFND 367 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~~ 367 (437)
..++-.+||+.+|++ .+.+-+.+.+|..+|.|.- + .+.+...|
T Consensus 138 ~~~t~~~lA~~lg~s-r~tvsR~l~~L~~~g~I~~--~--~~~i~i~d 180 (195)
T 3b02_A 138 VTVSHEEIADATASI-RESVSKVLADLRREGLIAT--A--YRRVYLLD 180 (195)
T ss_dssp EECCHHHHHHTTTSC-HHHHHHHHHHHHHHTSEEE--E--TTEEEECC
T ss_pred ccCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEe--c--CCEEEEeC
Confidence 358899999999997 8899999999999999852 2 45566654
No 377
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=21.21 E-value=2.7e+02 Score=22.17 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=32.5
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEe
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATIN 357 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id 357 (437)
...+..+||+.+|++ ...+-.+|..|...|.+...-+
T Consensus 58 ~~~s~~ela~~lgis-~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVS-ESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEe
Confidence 468999999999998 7889999999999999987654
No 378
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=20.97 E-value=75 Score=26.37 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=22.2
Q ss_pred hccccHHHHHHHhCCCChHHHHHHHH
Q psy9642 319 FLTLSLADVASRVQLGTPVQAEIYIL 344 (437)
Q Consensus 319 Ys~IsL~dIa~~l~L~~~~eaE~~l~ 344 (437)
|.+.++++||..++++ .+++|.++.
T Consensus 37 YL~~~l~eia~~l~~~-~~eve~vL~ 61 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCS-VEELEKVRQ 61 (130)
T ss_dssp SBSSCHHHHHHHTTCC-HHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCC-HHHHHHHHH
Confidence 8999999999999986 889987765
No 379
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=20.74 E-value=83 Score=27.35 Aligned_cols=33 Identities=9% Similarity=0.187 Sum_probs=29.7
Q ss_pred ccccHHHHHHHhCCCChHHHHHHHHHhHHcCceE
Q psy9642 320 LTLSLADVASRVQLGTPVQAEIYILKMISQNEIY 353 (437)
Q Consensus 320 s~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~ 353 (437)
..++-.+||..+|++ .+.+-+.+.+|..+|.|.
T Consensus 162 ~~~t~~~lA~~lG~s-r~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 162 VDFTVEEIANLIGSS-RQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp ECCCHHHHHHHHCSC-HHHHHHHHHHHHHTTSSE
T ss_pred ccCCHHHHHHHhCCc-HHHHHHHHHHHHHCCcEE
Confidence 358999999999997 889999999999999885
No 380
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=20.31 E-value=2.5e+02 Score=20.26 Aligned_cols=38 Identities=11% Similarity=0.285 Sum_probs=32.0
Q ss_pred hccccHHHHHHHhC----CCChHHHHHHHHHhHHcCceEEEEe
Q psy9642 319 FLTLSLADVASRVQ----LGTPVQAEIYILKMISQNEIYATIN 357 (437)
Q Consensus 319 Ys~IsL~dIa~~l~----L~~~~eaE~~l~~mI~~G~I~A~Id 357 (437)
...++..+|++.++ ++ ..-+-.+|..|.+.|.|.-.-+
T Consensus 21 ~~~~t~~ei~~~l~~~~~~s-~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 21 HSSINTNEVIKELSKTSTWS-PKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp SSSEEHHHHHHHHHHHSCCC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCCHHHHHHHHhhcCCcc-HHHHHHHHHHHHHCCCeEEEec
Confidence 45799999999997 44 6788999999999999986654
No 381
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=20.29 E-value=83 Score=24.71 Aligned_cols=47 Identities=17% Similarity=0.020 Sum_probs=35.7
Q ss_pred hccc-cHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEecCCCEEEEc
Q psy9642 319 FLTL-SLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFN 366 (437)
Q Consensus 319 Ys~I-sL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~~~g~v~F~ 366 (437)
=.++ +..+||+.++++ ..-+..-+..|..+|.|...=.-..|+.+-.
T Consensus 40 g~~lps~~eLa~~lgVS-r~tVr~al~~L~~~GlI~~~~gG~~G~~V~~ 87 (102)
T 2b0l_A 40 NEGLLVASKIADRVGIT-RSVIVNALRKLESAGVIESRSLGMKGTYIKV 87 (102)
T ss_dssp TEEEECHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSSCEEEEE
T ss_pred CCcCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEeCCCCcEEEec
Confidence 3567 999999999997 7889999999999999865431124655543
No 382
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.18 E-value=96 Score=27.96 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=37.0
Q ss_pred cchHHHHHHHHHhCCCCcchhhHHHHH--------HHHHHHhCCchHHHhhhhHhhh
Q psy9642 124 RGIPLIQTAIKKIQTSDSQLTSLHSDL--------CQLCLLAQNFKPALEFLDVDIT 172 (437)
Q Consensus 124 ~~i~~l~~ai~rl~~~~~~lT~~h~~l--------~~l~L~~~~y~~Al~il~~~I~ 172 (437)
-.+.||.+|+--++.-....+.+|... |-.|+.+|.|+.|..++.+-..
T Consensus 89 ~~lTPLESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 89 ERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp TTCCHHHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred CCCChHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 346799999998876555555666554 4569999999999999988544
No 383
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=20.02 E-value=1.4e+02 Score=23.06 Aligned_cols=37 Identities=16% Similarity=0.070 Sum_probs=32.5
Q ss_pred cccHHHHHHHhCCCChHHHHHHHHHhHHcCceEEEEec
Q psy9642 321 TLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINK 358 (437)
Q Consensus 321 ~IsL~dIa~~l~L~~~~eaE~~l~~mI~~G~I~A~Id~ 358 (437)
-|+..+|+++++++ ...+-.+|..|...|.|...-+.
T Consensus 36 gi~qkeLa~~~~l~-~~tvt~iLk~LE~kglIkr~~~~ 72 (91)
T 2dk5_A 36 GIWSRDVRYKSNLP-LTEINKILKNLESKKLIKAVKSV 72 (91)
T ss_dssp CEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEECCS
T ss_pred CcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEecCC
Confidence 59999999999998 78899999999999999855543
Done!