RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9642
(437 letters)
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha
solenoid, regulatory PART LID, hydrolase, protein
binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Length = 394
Score = 84.9 bits (209), Expect = 4e-18
Identities = 51/365 (13%), Positives = 128/365 (35%), Gaps = 26/365 (7%)
Query: 20 SFRELTEIIQKSMDVLTKYGQHLDNVLETLETFQHSLGILA------ILSAKLTLLSSSN 73
R + I + ++ + G+ + + ++ + L ++ ++ + + + +
Sbjct: 14 RIRIKEQGILQQGELYKQEGK-AKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMD 72
Query: 74 TGSEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAI 133
G+ + +L E+ +R + L + D + L +
Sbjct: 73 AGTGIEVQLCKDCIEWAKQEKRTFLRQS------LEARLIALYFDTALYTEALALGAQLL 126
Query: 134 KKIQTSD--SQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFY 191
++++ D + L + + N A L T AN
Sbjct: 127 RELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALT-SARTTANAIYCPPKVQGALDLQ 185
Query: 192 YGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVYGKAPNLPKNVS 251
G + ++++ A +F S L KY+L+ I+ G++ ++ + VS
Sbjct: 186 SGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALT-SLKYMLLCKIMLGQSDDVNQLVS 244
Query: 252 QAIC-RYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLTKQIVASLYKN 310
+ Y + + + Q L +Y + D + + + +LY
Sbjct: 245 GKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDV---IVQAHLGTLYDT 301
Query: 311 ----NIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATINKKDGMVVFN 366
N+ R+ + + + +A VA +QL P Q E + +MI + +++ +G+++
Sbjct: 302 MLEQNLCRIIEPYSRVQVAHVAESIQLPMP-QVEKKLSQMILDKKFSGILDQGEGVLIVF 360
Query: 367 DNPQR 371
+
Sbjct: 361 EETPV 365
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export,
transcription; 2.12A {Homo sapiens}
Length = 203
Score = 68.4 bits (167), Expect = 1e-13
Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 16/193 (8%)
Query: 180 QFDTKYFLQYFYYGGMIYLALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIV 239
+ T + Y YY G + ++++A + A H + K+ +LIYL+
Sbjct: 7 DYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSF-----AFEHCHRSSQKNKRMILIYLLP 61
Query: 240 YGKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGL 299
V K + ++ + N L L K+ F R +
Sbjct: 62 VKMLLGHMPTVE----LLKKYHLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLI 117
Query: 300 TKQIVASLYKNNIKR--LTKTFLTLSLADVASRVQLG-----TPVQAEIYILKMISQNEI 352
+++ Y+N K+ L LSL ++ + + + +I +
Sbjct: 118 LEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHV 177
Query: 353 YATINKKDGMVVF 365
I+ + +V
Sbjct: 178 KGYISHQHQKLVV 190
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Length = 84
Score = 54.0 bits (130), Expect = 9e-10
Identities = 13/76 (17%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 292 SRDENTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNE 351
S ++ L + ++ ++N+ +K + ++ ++ + +++ +AE +MI++
Sbjct: 5 SSGGSSILDRAVI----EHNLLSASKLYNNITFEELGALLEI-PAAKAEKIASQMITEGR 59
Query: 352 IYATINKKDGMVVFND 367
+ I++ DG+V F
Sbjct: 60 MNGFIDQIDGIVHFET 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 2e-08
Identities = 55/305 (18%), Positives = 96/305 (31%), Gaps = 104/305 (34%)
Query: 10 NNVRQLSAQGSFRELTEIIQKSMDVLTKYGQHLDNVLETLETFQHSLGIL----AILSAK 65
+N + ++ +LT II+ S++VL E + F L + I +
Sbjct: 345 DNWKHVN----CDKLTTIIESSLNVLEPA--------EYRKMFD-RLSVFPPSAHIPTIL 391
Query: 66 LTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLKTPQRG 125
L+L+ + + + S + +N H+Y+ K
Sbjct: 392 LSLI--------WFDVIKSDVMVVVNKL----------------HKYSLVEKQPKESTIS 427
Query: 126 IPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKY 185
IP I +K +LH + ++ F D+ P D
Sbjct: 428 IPSIYLELKV---KLENEYALHR------SIVDHYNIPKTFDSDDLIP-----PYLD--- 470
Query: 186 FLQYFYYGGMIYLA--LKNYE--------RALY----FFEVII---TTPALAVSHIM--- 225
QYFY ++ LKN E R ++ F E I +T A I+
Sbjct: 471 --QYFYS----HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 226 --LEGYKKYLLIYLIVYGKAPNLPKNVSQAICRYIKPLSQ--------PYLDLVSVYTNN 275
L+ YK Y+ N PK + + + L + Y DL+ +
Sbjct: 525 QQLKFYKPYI---------CDNDPKY-ERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 276 NSTEL 280
+
Sbjct: 575 EDEAI 579
Score = 49.1 bits (116), Expect = 2e-06
Identities = 71/474 (14%), Positives = 141/474 (29%), Gaps = 145/474 (30%)
Query: 20 SFRELTEIIQKSMDVLTKYGQHLDNVLETLETFQHSL------GILAI----LSAKLTLL 69
S E+ II V + TL + Q + +L I L + +
Sbjct: 47 SKEEIDHIIMSKDAV-----SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 70 SSSNTG-----SEYQEELFSQIQEF--LNMCNPD---QIRHAGDLYAEL-SHQYT----- 113
+ E ++ L++ Q F N+ ++R A L EL +
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--LL-ELRPAKNVLIDGV 158
Query: 114 ----KTVM------DLKTPQR---GIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNF 160
KT + K + I + +K + ++ L L L + N+
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEML-QKLLYQ--IDPNW 213
Query: 161 KPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERAL------------- 207
+ I + L+ L K YE L
Sbjct: 214 TSRSDHSSNIKLRIH------SIQAELRRL-------LKSKPYENCLLVLLNVQNAKAWN 260
Query: 208 YF-FE--VIITT---------PALAVSHIMLEGYKKYL-------LIYLIVYGKAPNLPK 248
F +++TT A +HI L+ + L L+ + + +LP+
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 249 NVSQ----AIC--------------RYIKPLSQPYLDLVSVYTNN-NSTELQHLLLKYAD 289
V + + ++ N E + + + +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS- 379
Query: 290 VFSRDENTGLTKQIVASLYKNNIKR----LTKTFLTLSLADVASRVQLGTPVQAEIYI-- 343
VF + + +++ ++ + IK + SL + P ++ I I
Sbjct: 380 VF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-------KQPKESTISIPS 430
Query: 344 --LKMISQNEIYATINKKDGMVVFNDNPQRFNNPLTFAQIESNIRACMHLDGKF 395
L++ + E +++ +V +N P TF +S+ +LD F
Sbjct: 431 IYLELKVKLENEYALHRS--IV------DHYNIPKTF---DSDDLIPPYLDQYF 473
Score = 31.7 bits (71), Expect = 0.52
Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 41/136 (30%)
Query: 31 SMDVLTKY-----GQHLDNV--LETLETFQHSLGILAILSAKL--TLLSSSNTGS----- 76
L +Y G HL N+ E + F+ L K+ + + +GS
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 77 ----EYQ----------EELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTV-MDLKT 121
Y+ E L + I +FL + I +YT + + L
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC----------SKYTDLLRIALMA 574
Query: 122 PQRGIPLIQTAIKKIQ 137
I + A K++Q
Sbjct: 575 EDEAI--FEEAHKQVQ 588
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA,
nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Length = 455
Score = 49.0 bits (116), Expect = 2e-06
Identities = 56/422 (13%), Positives = 117/422 (27%), Gaps = 77/422 (18%)
Query: 7 QFVNNVRQLSAQGSFRELTEIIQKSMDVLTKY-GQHLDNVLETLETFQHSLGILAILSAK 65
+ +V SA S + E Q ++ L H++ ++ + LA
Sbjct: 70 NYARDVDPWSAWSSSDLIFEFYQCLINCLINDNAPHIEMLIPVATRETEFIINLAGKLDS 129
Query: 66 LTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLKTPQRG 125
L + ++ + S + N P + + ++ QR
Sbjct: 130 FHLQLHTR-SHQFLSHISSILSRLFNSIKPPRGNASST--------------NIPGKQRI 174
Query: 126 IPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKY 185
+ + + I LC +NF+P + ++
Sbjct: 175 LLYLVNKLNNIYFRIESP-----QLCSNIF--KNFQPKSMLAHFN---------EYQLDQ 218
Query: 186 FLQYFYYGGMIYLALKNYERA-LYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVY---- 240
++Y Y G YL A + F E + L +++ + +L Y+I
Sbjct: 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLIL 278
Query: 241 GKAPNLPKNVSQAICRYIKPLSQPYLDLVSVYTNNNSTELQHLLLKYADVFSRDENTGLT 300
GK + + + + L N + L + L
Sbjct: 279 GKMVK-WGPLRPFLSQE---TIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCAR---QLL 331
Query: 301 KQIVASL----YKNNIKRLTKTFLT------LSLADVASRVQLG---------------- 334
++ L Y+N IK + K++ T L + + +QL
Sbjct: 332 IVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIY 391
Query: 335 ----TPVQAEIYILKMISQNEIYATINKKDGMVVFNDNPQRFNNPLTFAQIESNIRACMH 390
+P E ++ +I+ + A + + V + I
Sbjct: 392 NGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKTTM-IQEI--VPPVNERITKMFP 448
Query: 391 LD 392
Sbjct: 449 AH 450
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 3e-06
Identities = 73/498 (14%), Positives = 138/498 (27%), Gaps = 188/498 (37%)
Query: 7 QFVNNVRQLSAQGSFRELTEIIQKSMDVLTKY--GQ--H-----LDNVLETLETFQHSLG 57
+V+++ + S G F ++ + + Y G H L +T L
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFE--NCYLEGNDIHALAAKLLQENDTTLVKTKEL- 122
Query: 58 ILAILSAKLT------------LLSSSNTGS--------------EYQEELFSQIQEFLN 91
I ++A++ L + G+ +Y EEL ++
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL----RDLYQ 178
Query: 92 MCNP---DQIRHAGDLYAELSHQ-------YTKTVMD----LKTPQRG------------ 125
+ D I+ + + +EL +T+ ++ L+ P
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 126 IPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQ--NFKPALEFLDV---------DITT- 173
PLI + L + A+ F P E + T
Sbjct: 238 CPLI------------GVIQ----LAHYVVTAKLLGFTPG-ELRSYLKGATGHSQGLVTA 280
Query: 174 --IA--NEGPQFD--TKYFLQY-FYYG-------GMIYLALKNYERALYFFEVIITTPAL 219
IA + F + + F+ G L E +L E + +P L
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG-VPSPML 339
Query: 220 AVSHIMLEGYKKYLLIYLIVYGKAPN--LPKNVSQAICRYIKP----LSQPYLDLVSVYT 273
++S++ E + Y+ N LP I +S P L
Sbjct: 340 SISNLTQEQVQDYV--------NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG--- 388
Query: 274 NNNSTELQHLLLKYADVFSRDENTGLTKQIVASLYKNNIKRLTKTFLTLS-------LAD 326
L L K D++ +I S K + + FL ++ L
Sbjct: 389 ------LNLTLRKAKAPSGLDQS-----RIPFSERK---LKFSNRFLPVASPFHSHLLVP 434
Query: 327 VASRV--------------QLGTPVQAEIYILKMISQNEIYATINKKDGMVVFNDNPQRF 372
+ + + PV Y T DG + +
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPV---------------YDT---FDG-----SDLRVL 471
Query: 373 NNPLTFAQIESNIRACMH 390
+ ++ ++ IR +
Sbjct: 472 SGSISERIVDCIIRLPVK 489
Score = 40.8 bits (95), Expect = 0.001
Identities = 49/313 (15%), Positives = 88/313 (28%), Gaps = 98/313 (31%)
Query: 149 DLCQLCLLAQN-FKPA----LEFLDVDITTIANEGPQFDTKYF----LQYFY--YGGMIY 197
DL + AQ+ + A + I I P T +F + Y MI+
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 198 LALKNYERALYFFEVIITTPALAVSHIMLEGYKKYLLIYLIVYGKAPNLPKN-------V 250
+ E I + K L + + +
Sbjct: 1694 ---ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL-----------SATQFTQPALTLM 1739
Query: 251 SQAICRYIKPLSQPYLDLVSV--------YTNNNSTELQHLLLKYADVFSRDENTGLTKQ 302
+A +K S+ + + Y L ADV S + +
Sbjct: 1740 EKAAFEDLK--SKGLIPADATFAGHSLGEYAA---------LASLADVMSIES----LVE 1784
Query: 303 IVA---SLYKNNIKRLTKTFLTLSLADVA-SRVQLGTPVQAEIYILKMISQNEIYATINK 358
+V + + R + + RV +A Y+++ + K
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG---------K 1835
Query: 359 KDGMVVF--NDN--PQRFNNPLTFAQIESNIRACMHLDGKFQAMEE--EILVNPLYVKK- 411
+ G +V N N Q Q + A G +A++ +L N + ++K
Sbjct: 1836 RTGWLVEIVNYNVENQ---------QY---VAA-----GDLRALDTVTNVL-NFIKLQKI 1877
Query: 412 -----AASPSDEE 419
S S EE
Sbjct: 1878 DIIELQKSLSLEE 1890
Score = 32.7 bits (74), Expect = 0.33
Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 26/127 (20%)
Query: 15 LSAQG---SFRELTEIIQKSMDVLTKYGQHLDNVLETLETFQHSLGILAILSAKLTLLSS 71
L++ S L ++V+ G + + E + + G++AI ++ S
Sbjct: 1770 LASLADVMSIESL-------VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 72 SNTGSEYQEELFSQIQEFL-----NMCNPDQIRHAGDLYA--ELSHQYTKTVMD-LKTPQ 123
E + + + N Q AGDL A ++ V++ +K
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYN-VENQQYVAAGDLRALDTVT-----NVLNFIKL-- 1874
Query: 124 RGIPLIQ 130
+ I +I+
Sbjct: 1875 QKIDIIE 1881
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.15
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 13/35 (37%)
Query: 130 QTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKPAL 164
+ A+KK+Q S L L A + PAL
Sbjct: 19 KQALKKLQAS-------------LKLYADDSAPAL 40
Score = 32.2 bits (72), Expect = 0.16
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 20/48 (41%)
Query: 309 KNNIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYATI 356
K +K+L + L L D A P A I AT+
Sbjct: 19 KQALKKLQAS-LKLYADDSA-------PALA------------IKATM 46
Score = 30.3 bits (67), Expect = 0.68
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
Query: 199 ALKNYERAL--YFFEVIITTPALAVS 222
ALK + +L Y + + PALA+
Sbjct: 21 ALKKLQASLKLYADD---SAPALAIK 43
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 29.2 bits (66), Expect = 2.1
Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 15/96 (15%)
Query: 275 NNSTELQHLLLKY-ADVFSRDENTGLTKQIVASLYKNNIKRLTKTFLTLSLADVASRVQL 333
N T + L+++ A +F+ + G T Y+ +L +
Sbjct: 97 CNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT-YLADVEQSMGLMNSG 155
Query: 334 G-TPV-------QAEIYILKMISQNEIYATINKKDG 361
+ E+ ++ T+ ++DG
Sbjct: 156 AVYALWDYSAEFGDELSFR--EGES---VTVLRRDG 186
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure,
structural genomics, P protein structure initiative;
HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Length = 247
Score = 29.0 bits (65), Expect = 2.4
Identities = 12/83 (14%), Positives = 20/83 (24%), Gaps = 17/83 (20%)
Query: 80 EELFSQIQEFLNMCNPDQIRHA-----------------GDLYAELSHQYTKTVMDLKTP 122
E L Q + Q + +L +L Q L
Sbjct: 23 ESLLRQAHLASGFADNHQYQLFFRALFDMVEIFEQIQLKSELAKDLEKQRLSYRHWLNVE 82
Query: 123 QRGIPLIQTAIKKIQTSDSQLTS 145
+ + + +I SQL
Sbjct: 83 GVDQEALNSLLNEIDVVHSQLMG 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 28.2 bits (63), Expect = 3.4
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 190 FYYGGMIYLALKNYERALYFFEVII 214
++ G L LK +A FE++I
Sbjct: 107 VFHTGQCQLRLKAPLKAKECFELVI 131
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 29.0 bits (65), Expect = 3.6
Identities = 14/114 (12%), Positives = 34/114 (29%), Gaps = 11/114 (9%)
Query: 103 DLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQTSDSQLTSLHSDLCQLCLLAQNFKP 162
+ Y + LK ++ I++++ L + L+ +P
Sbjct: 18 EWYKMIRQFSVPDAEILKA------EVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEP 71
Query: 163 ALEFLDVD-----ITTIANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFE 211
+ + + TI + ++ GM K Y A+ ++
Sbjct: 72 GKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYR 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 28.6 bits (63), Expect = 4.6
Identities = 13/139 (9%), Positives = 41/139 (29%), Gaps = 4/139 (2%)
Query: 78 YQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTVMDLKTPQRGIPLIQTAIKKIQ 137
Q+ + N ++ + + + V+ + I ++ + +
Sbjct: 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146
Query: 138 TSDSQLTSL--HSDLCQLCLLAQNFKPALEFLDVDITTIANEGPQFDTKYFLQYFYYGGM 195
T +L + + + K ++ + + + + ++ ++ Y
Sbjct: 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAK 204
Query: 196 IYLALKNYERALYFFEVII 214
YE +LY I
Sbjct: 205 ALYLDSRYEESLYQVNKAI 223
>3jvf_C Interleukin-17 receptor A; cytokine, cysteine-knot growth factor,
receptor complex, disulfide bond, glycoprotein,
secreted, membrane, transmembrane; HET: MLY NAG; 3.30A
{Homo sapiens}
Length = 286
Score = 27.9 bits (61), Expect = 6.6
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 13/76 (17%)
Query: 36 TKYGQHL--DNVLETLETFQHSLGILAILSAKLT-------LLSSSNTGSEYQEELFSQI 86
T Y L +E F+H I A + L + +Q QI
Sbjct: 197 THYQILLTSFPHMENHSCFEHMHHIPAPRPEEFHQRSNVTLTLRNLKGCCRHQ----VQI 252
Query: 87 QEFLNMCNPDQIRHAG 102
Q F + C D +RH+
Sbjct: 253 QPFFSSCLNDCLRHSA 268
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 26.8 bits (59), Expect = 8.7
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 185 YFLQYFYYGGMIYLALKNYERALYFFE 211
Y ++F G A+ Y+ A++ +
Sbjct: 53 YDSRFFLGLGACRQAMGQYDLAIHSYS 79
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 27.5 bits (61), Expect = 9.1
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 174 IANEGPQFDTKYFLQYFYYGGMIYLALKNYERALYFFE 211
I + + + ++ GM L + Y A+ FF+
Sbjct: 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFK 127
>1roc_A Anti-silencing protein 1; beta-sandwich, replication, chaperone;
1.50A {Saccharomyces cerevisiae} SCOP: b.1.22.1 PDB:
2ygv_A
Length = 155
Score = 26.9 bits (59), Expect = 9.3
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 363 VVFNDNPQRFNNPLTFAQIESNIR-ACMHLDGKFQAMEEEILVNPLYVKKAASPSDE 418
+ +NP +F +P F I C ++++ ++ YV + S +
Sbjct: 10 IKVLNNPAKFTDPYEF-----EITFEC------LESLKHDLEWKLTYVGSSRSLDHD 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.374
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,327,115
Number of extensions: 379225
Number of successful extensions: 1038
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1017
Number of HSP's successfully gapped: 53
Length of query: 437
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 341
Effective length of database: 4,021,377
Effective search space: 1371289557
Effective search space used: 1371289557
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.8 bits)