RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9642
         (437 letters)



>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 84

 Score = 51.3 bits (123), Expect = 3e-09
 Identities = 12/73 (16%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 300 TKQIVASLYKN----NIKRLTKTFLTLSLADVASRVQLGTPVQAEIYILKMISQNEIYAT 355
           +    + L +     N+   +K +  ++  ++ + +++    +AE    +MI++  +   
Sbjct: 5   SSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEI-PAAKAEKIASQMITEGRMNGF 63

Query: 356 INKKDGMVVFNDN 368
           I++ DG+V F   
Sbjct: 64  IDQIDGIVHFETR 76


>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 92

 Score = 29.8 bits (67), Expect = 0.15
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 70  SSSNTGSEYQEELFSQIQEFLNMC-NPDQIRHAGDLYAELSHQYTKTVMDLKTPQRGIPL 128
           SS ++GSE  +E+ + I+E L+    P      GD+           +  L+      P 
Sbjct: 2   SSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLK-LQGSCTSCPS 60

Query: 129 IQTAIK 134
               +K
Sbjct: 61  SIITLK 66


>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 124

 Score = 28.2 bits (63), Expect = 1.0
 Identities = 5/23 (21%), Positives = 8/23 (34%)

Query: 189 YFYYGGMIYLALKNYERALYFFE 211
             YY  +    L  Y  A  + +
Sbjct: 75  CLYYLTIGCYKLGEYSMAKRYVD 97


>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId:
           2261]}
          Length = 333

 Score = 28.5 bits (62), Expect = 1.7
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 77  EYQEELFSQIQEFLNMCNPDQIRHAGDLY 105
           E   E F    E     N D I  AGDL+
Sbjct: 23  EEFAEAFKNALEIAVQENVDFILIAGDLF 51


>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29
           {Cryptosporidium parvum [TaxId: 5807]}
          Length = 193

 Score = 26.6 bits (58), Expect = 4.8
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 65  KLTLLSSSNTGSEYQEELFSQIQEFLNMCNPDQIRHAGDLYAELSHQYTKTV 116
            L LL          +EL S  +E L     + +   G++ ++   +  K +
Sbjct: 4   DLVLLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVCSQEYVEMLKNI 55


>d2i32a1 b.1.22.1 (A:1-154) Anti-silencing protein 1, ASF1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 154

 Score = 25.8 bits (57), Expect = 7.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)

Query: 363 VVFNDNPQRFNNPLTF 378
           VV  DNP  F NP  F
Sbjct: 9   VVVLDNPSPFYNPFQF 24


>d2cu9a1 b.1.22.1 (A:1-161) Anti-silencing protein 1, ASF1
           {Schizosaccharomyces pombe [TaxId: 4896]}
          Length = 161

 Score = 25.5 bits (56), Expect = 9.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 363 VVFNDNPQRFNNPLTF 378
           V   +NP +F++P  F
Sbjct: 9   VNVLNNPAKFSDPYKF 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0663    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,511,885
Number of extensions: 69589
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 19
Length of query: 437
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 349
Effective length of database: 1,199,356
Effective search space: 418575244
Effective search space used: 418575244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)