BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9643
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P4S|A Chain A, Structure Of Purine Nucleoside Phosphorylase From
Anopheles Gambiae In Complex With Dadme-immh
pdb|2P4S|B Chain B, Structure Of Purine Nucleoside Phosphorylase From
Anopheles Gambiae In Complex With Dadme-immh
pdb|2P4S|C Chain C, Structure Of Purine Nucleoside Phosphorylase From
Anopheles Gambiae In Complex With Dadme-immh
Length = 373
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 169/278 (60%), Positives = 212/278 (76%)
Query: 126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH 185
YTY+ +Q IA +LL+ +RPK+GIICGSGL T+A+ +TD F Y+TIP+FPVSTV GH
Sbjct: 90 YTYDTLQEIATYLLERTELRPKVGIICGSGLGTLAEQLTDVDSFDYETIPHFPVSTVAGH 149
Query: 186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
G+LVFG + G+P+MCMQGRFH+YEGYPL KCAMP+RVM L+G THL+ATNAAGG NP Y
Sbjct: 150 VGRLVFGYLAGVPVMCMQGRFHHYEGYPLAKCAMPVRVMHLIGCTHLIATNAAGGANPKY 209
Query: 246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
VGDIM+IKDHINLMGFAGNNPL G N++RFGPRF M Y+ +L IAR + +
Sbjct: 210 RVGDIMLIKDHINLMGFAGNNPLQGPNDERFGPRFFGMANTYDPKLNQQAKVIARQIGIE 269
Query: 306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
+ ++EGVY+ +GGPNFETVAE+ ML + GVDA+GMSTVHE+ITA HCGMT AFSLITN
Sbjct: 270 NELREGVYTCLGGPNFETVAEVKMLSMLGVDAIGMSTVHEIITARHCGMTCFAFSLITNM 329
Query: 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
C Y++ E H+ ++ GK R + V+RIV +I
Sbjct: 330 CTMSYEEEEEHCHDSIVGVGKNREKTLGEFVSRIVKHI 367
>pdb|1LV8|A Chain A, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LV8|B Chain B, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LV8|C Chain C, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LV8|D Chain D, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LV8|E Chain E, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LV8|F Chain F, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|A Chain A, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|B Chain B, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|C Chain C, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|D Chain D, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|E Chain E, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|F Chain F, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
Length = 289
Score = 325 bits (832), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 150/282 (53%), Positives = 194/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE Q AK+LL RP++ +ICGSGL + + +T F Y IP FP ST
Sbjct: 1 MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG++NG + MQGRFH YEGYP WK P+RV +L+GV L+ TNAAGGL
Sbjct: 61 VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R +
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++GGPNFETVAE +LR G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + DY+ +ANHEEV++AGK ++ V+ +++ I
Sbjct: 241 ITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282
>pdb|1B8N|A Chain A, Purine Nucleoside Phosphorylase
pdb|1B8O|A Chain A, Purine Nucleoside Phosphorylase
pdb|3FUC|A Chain A, Recombinant Calf Purine Nucleoside Phosphorylase In A
Binary Complex With Multisubstrate Analogue Inhibitor
9-(5',5'- Difluoro-5'-Phosphonopentyl)-9-Deazaguanine
Structure In A New Space Group With One Full Trimer In
The Asymmetric Unit
pdb|3FUC|B Chain B, Recombinant Calf Purine Nucleoside Phosphorylase In A
Binary Complex With Multisubstrate Analogue Inhibitor
9-(5',5'- Difluoro-5'-Phosphonopentyl)-9-Deazaguanine
Structure In A New Space Group With One Full Trimer In
The Asymmetric Unit
pdb|3FUC|C Chain C, Recombinant Calf Purine Nucleoside Phosphorylase In A
Binary Complex With Multisubstrate Analogue Inhibitor
9-(5',5'- Difluoro-5'-Phosphonopentyl)-9-Deazaguanine
Structure In A New Space Group With One Full Trimer In
The Asymmetric Unit
Length = 284
Score = 325 bits (832), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 150/282 (53%), Positives = 194/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE Q AK+LL RP++ +ICGSGL + + +T F Y IP FP ST
Sbjct: 1 MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG++NG + MQGRFH YEGYP WK P+RV +L+GV L+ TNAAGGL
Sbjct: 61 VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R +
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++GGPNFETVAE +LR G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + DY+ +ANHEEV++AGK ++ V+ +++ I
Sbjct: 241 ITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282
>pdb|1V48|A Chain A, Calf Spleen Purine Nucleoside Phosphorylase (Pnp) Binary
Complex With 9-(5,5-Difluoro-5-Phosphonopenthyl)guanine
pdb|2AI1|A Chain A, Purine Nucleoside Phosphorylase From Calf Spleen
pdb|2AI2|A Chain A, Purine Nucleoside Phosphorylase From Calf Spleen
pdb|2AI3|A Chain A, Purine Nucleoside Phosphorylase From Calf Spleen
Length = 289
Score = 325 bits (832), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 150/282 (53%), Positives = 194/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE Q AK+LL RP++ +ICGSGL + + +T F Y IP FP ST
Sbjct: 1 MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG++NG + MQGRFH YEGYP WK P+RV +L+GV L+ TNAAGGL
Sbjct: 61 VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R +
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++GGPNFETVAE +LR G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + DY+ +ANHEEV++AGK ++ V+ +++ I
Sbjct: 241 ITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282
>pdb|1VFN|A Chain A, Purine Nucleoside Phosphorylase
Length = 281
Score = 324 bits (830), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 149/278 (53%), Positives = 193/278 (69%)
Query: 126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH 185
YTYE Q AK+LL RP++ +ICGSGL + + +T F Y IP FP STVPGH
Sbjct: 2 YTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGH 61
Query: 186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
G+LVFG++NG + MQGRFH YEGYP WK P+RV +L+GV L+ TNAAGGLNP++
Sbjct: 62 AGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNF 121
Query: 246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R + +
Sbjct: 122 EVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQ 181
Query: 306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
++EG Y ++GGPNFETVAE +LR G DAVGMSTV EVI A HCG+ V FSLITNK
Sbjct: 182 RELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNK 241
Query: 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
+ DY+ +ANHEEV++AGK ++ V+ +++ I
Sbjct: 242 VIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 279
>pdb|2QPL|A Chain A, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase Complexed To A Novel Purine Analogue
Length = 282
Score = 323 bits (829), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 149/278 (53%), Positives = 193/278 (69%)
Query: 126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH 185
YTYE Q AK+LL RP++ +ICGSGL + + +T F Y IP FP STVPGH
Sbjct: 3 YTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGH 62
Query: 186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
G+LVFG++NG + MQGRFH YEGYP WK P+RV +L+GV L+ TNAAGGLNP++
Sbjct: 63 AGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNF 122
Query: 246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R + +
Sbjct: 123 EVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQ 182
Query: 306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
++EG Y ++GGPNFETVAE +LR G DAVGMSTV EVI A HCG+ V FSLITNK
Sbjct: 183 RELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNK 242
Query: 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
+ DY+ +ANHEEV++AGK ++ V+ +++ I
Sbjct: 243 VIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 280
>pdb|1A9Q|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
Inosine
pdb|1A9R|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
Hypoxanthine And Sulfate
Length = 282
Score = 322 bits (825), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 149/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE Q AK+LL RP++ +ICGSGL + + +T F Y IP FP ST
Sbjct: 1 MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG++NG + MQGRFH YEGYP WK P+RV +L+GV L+ TNAAGGL
Sbjct: 61 VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R +
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++GGPNFETVAE +LR G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + D + +ANHEEV++AGK ++ V+ +++ I
Sbjct: 241 ITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282
>pdb|1PBN|A Chain A, Purine Nucleoside Phosphorylase
pdb|3PNP|A Chain A, The High Resolution Crystal Structure Of Bovine Spleen
Purine Nucleoside Phosphorylase In Complex Forms With
Phosphate And 9- Deazainosine
pdb|4PNP|A Chain A, The High Resolution Crystal Structure Of Bovine Spleen
Purine Nucleoside Phosphorylase In Complex Forms With
Phosphate And 9- Deazainosine
Length = 289
Score = 322 bits (825), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 149/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE Q AK+LL RP++ +ICGSGL + + +T F Y IP FP ST
Sbjct: 1 MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG++NG + MQGRFH YEGYP WK P+RV +L+GV L+ TNAAGGL
Sbjct: 61 VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R +
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++GGPNFETVAE +LR G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + D + +ANHEEV++AGK ++ V+ +++ I
Sbjct: 241 ITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282
>pdb|1A9O|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
Phosphate
pdb|1A9P|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
9-deazainosine And Phosphate
pdb|1A9S|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
Inosine And Sulfate
Length = 289
Score = 322 bits (825), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 149/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE Q AK+LL RP++ +ICGSGL + + +T F Y IP FP ST
Sbjct: 1 MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG++NG + MQGRFH YEGYP WK P+RV +L+GV L+ TNAAGGL
Sbjct: 61 VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R +
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++GGPNFETVAE +LR G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + D + +ANHEEV++AGK ++ V+ +++ I
Sbjct: 241 ITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282
>pdb|1FXU|A Chain A, Purine Nucleoside Phosphorylase From Calf Spleen In
Complex With N(7)- Acycloguanosine Inhibitor And A
Phosphate Ion
Length = 289
Score = 322 bits (824), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 149/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE Q AK+LL RP++ +ICGSGL + + +T F Y IP FP ST
Sbjct: 1 MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG++NG + MQGRFH YEGYP WK P+RV +L+GV L+ TNAAGGL
Sbjct: 61 VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R +
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++GGPNFETVAE +LR G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + D + +ANHEEV++AGK ++ V+ +++ I
Sbjct: 241 ITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282
>pdb|1A9T|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
9-Deazainosine And Phosphate
Length = 284
Score = 322 bits (824), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 149/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE Q AK+LL RP++ +ICGSGL + + +T F Y IP FP ST
Sbjct: 1 MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG++NG + MQGRFH YEGYP WK P+RV +L+GV L+ TNAAGGL
Sbjct: 61 VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R +
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++GGPNFETVAE +LR G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + D + +ANHEEV++AGK ++ V+ +++ I
Sbjct: 241 ITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282
>pdb|3PHB|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|Q Chain Q, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|S Chain S, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|T Chain T, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|U Chain U, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|Y Chain Y, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
Length = 324
Score = 317 bits (812), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 149/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE ++ A++LL RP++ IICGSGL + D +T IF Y IP FP ST
Sbjct: 36 MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRST 95
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG +NG + MQGRFH YEGYPLWK P+RV L+GV L+ TNAAGGL
Sbjct: 96 VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL 155
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R L +
Sbjct: 156 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ 215
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++ GP+FETVAE +L+ G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 216 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 275
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + DY+ +ANHEEV+ AGK ++ V+ +++ I
Sbjct: 276 ITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASI 317
>pdb|1PF7|E Chain E, Crystal Structure Of Human Pnp Complexed With Immucillin H
pdb|1RR6|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With Immucillin-H And Phosphate
pdb|1RSZ|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With Dadme-Immucillin-H And Sulfate
pdb|1RT9|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With Immucillin-H And Sulfate
pdb|1YRY|E Chain E, Crystal Structure Of Human Pnp Complexed With Mesg
pdb|1ULA|A Chain A, Application Of Crystallographic And Modeling Methods In
The Design Of Purine Nucleoside Phosphorylase Inhibitors
pdb|1ULB|A Chain A, Application Of Crystallographic And Modeling Methods In
The Design Of Purine Nucleoside Phosphorylase Inhibitors
pdb|3BGS|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase With L-
Dadme-Immh And Phosphate
pdb|2Q7O|E Chain E, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With L- Immucillin-H
pdb|3D1V|A Chain A, Crystal Structure Of Human Pnp Complexed With
2-Mercapto(3h) Quinazolinone
pdb|3K8O|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|Q Chain Q, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|S Chain S, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|T Chain T, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|U Chain U, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|Y Chain Y, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8Q|A Chain A, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Serme-Immucillin H
pdb|3INY|A Chain A, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With 7-Deazaguanine
Length = 289
Score = 317 bits (811), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 149/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE ++ A++LL RP++ IICGSGL + D +T IF Y IP FP ST
Sbjct: 1 MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG +NG + MQGRFH YEGYPLWK P+RV L+GV L+ TNAAGGL
Sbjct: 61 VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R L +
Sbjct: 121 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++ GP+FETVAE +L+ G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 181 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + DY+ +ANHEEV+ AGK ++ V+ +++ I
Sbjct: 241 ITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASI 282
>pdb|1M73|E Chain E, Crystal Structure Of Human Pnp At 2.3a Resolution
pdb|1RCT|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
Complexed With Inosine
pdb|1V2H|E Chain E, Crystal Structure Of Human Pnp Complexed With Guanine
pdb|1V3Q|E Chain E, Structure Of Human Pnp Complexed With Ddi
pdb|1PWY|E Chain E, Crystal Structure Of Human Pnp Complexed With Acyclovir
pdb|1RFG|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
Complexed With Guanosine
pdb|1V41|E Chain E, Crystal Structure Of Human Pnp Complexed With 8-Azaguanine
pdb|1V45|E Chain E, Crystal Structure Of Human Pnp Complexed With
3-Deoxyguanosine
Length = 288
Score = 316 bits (809), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 148/278 (53%), Positives = 192/278 (69%)
Query: 126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH 185
YTYE ++ A++LL RP++ IICGSGL + D +T IF Y IP FP STVPGH
Sbjct: 4 YTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRSTVPGH 63
Query: 186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
G+LVFG +NG + MQGRFH YEGYPLWK P+RV L+GV L+ TNAAGGLNP +
Sbjct: 64 AGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKF 123
Query: 246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R L + +
Sbjct: 124 EVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQMGEQ 183
Query: 306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
++EG Y ++ GP+FETVAE +L+ G DAVGMSTV EVI A HCG+ V FSLITNK
Sbjct: 184 RELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNK 243
Query: 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
+ DY+ +ANHEEV+ AGK ++ V+ +++ I
Sbjct: 244 VIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASI 281
>pdb|3GB9|A Chain A, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,n243d Complexed With 2-fluoroadenine
pdb|3GB9|B Chain B, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,n243d Complexed With 2-fluoroadenine
pdb|3GB9|C Chain C, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,n243d Complexed With 2-fluoroadenine
pdb|3GGS|A Chain A, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
pdb|3GGS|B Chain B, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
pdb|3GGS|C Chain C, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
Length = 311
Score = 313 bits (803), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 147/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE ++ A++LL RP++ IICGSGL + D +T IF Y IP FP ST
Sbjct: 23 MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRST 82
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG +NG + MQGRFH YEGYPLWK P+RV L+GV L+ TNAAGGL
Sbjct: 83 VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL 142
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R L +
Sbjct: 143 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ 202
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++ GP+F+TVAE +L+ G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 203 MGEQRELQEGTYVMVAGPSFQTVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 262
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
IT+K + DY+ +ANHEEV+ AGK ++ V+ +++ I
Sbjct: 263 ITDKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASI 304
>pdb|2A0X|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257f
Mutant
pdb|2ON6|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
Mutant H257f With Imm-H
Length = 289
Score = 313 bits (803), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 148/282 (52%), Positives = 192/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE ++ A++LL RP++ IICGSGL + D +T IF Y IP FP ST
Sbjct: 1 MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG +NG + MQGRFH YEGYPLWK P+RV L+GV L+ TNAAGGL
Sbjct: 61 VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R L +
Sbjct: 121 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++ GP+FETVAE +L+ G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 181 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + DY+ +AN EEV+ AGK ++ V+ +++ I
Sbjct: 241 ITNKVIMDYESLEKANFEEVLAAGKQAAQKLEQFVSILMASI 282
>pdb|2A0Y|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257d
Mutant
pdb|2OC4|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
Mutant H257d With Imm-H
Length = 289
Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 148/282 (52%), Positives = 192/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE ++ A++LL RP++ IICGSGL + D +T IF Y IP FP ST
Sbjct: 1 MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG +NG + MQGRFH YEGYPLWK P+RV L+GV L+ TNAAGGL
Sbjct: 61 VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R L +
Sbjct: 121 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++ GP+FETVAE +L+ G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 181 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + DY+ +AN EEV+ AGK ++ V+ +++ I
Sbjct: 241 ITNKVIMDYESLEKANDEEVLAAGKQAAQKLEQFVSILMASI 282
>pdb|2A0W|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257g
Mutant
pdb|2OC9|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
Mutant H257g With Imm-H
Length = 289
Score = 313 bits (801), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 148/282 (52%), Positives = 192/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE ++ A++LL RP++ IICGSGL + D +T IF Y IP FP ST
Sbjct: 1 MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG +NG + MQGRFH YEGYPLWK P+RV L+GV L+ TNAAGGL
Sbjct: 61 VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R L +
Sbjct: 121 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++ GP+FETVAE +L+ G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 181 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + DY+ +AN EEV+ AGK ++ V+ +++ I
Sbjct: 241 ITNKVIMDYESLEKANGEEVLAAGKQAAQKLEQFVSILMASI 282
>pdb|4EAR|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EAR|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EAR|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
Length = 324
Score = 310 bits (794), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 147/282 (52%), Positives = 192/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE ++ A++LL RP++ IICGSGL + D +T IF Y IP FP ST
Sbjct: 36 MENGYTYEDYKNTAEYLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRST 95
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG +NG + MQGRFH YEGYPL+K P+RV L+GV L+ TNAAGGL
Sbjct: 96 VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLYKVTFPVRVFHLLGVDTLVVTNAAGGL 155
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R L +
Sbjct: 156 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTYKQ 215
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++ GP+FETVAE +L+ G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 216 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 275
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + DY+ +AN EEV+ AGK ++ V+ +++ I
Sbjct: 276 ITNKVIMDYESLEKANXEEVLAAGKQAAQKLEQFVSILMASI 317
>pdb|4EB8|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EB8|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EB8|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4ECE|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4GKA|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
Length = 324
Score = 310 bits (793), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 147/282 (52%), Positives = 192/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE ++ A++LL RP++ IICGSGL + D +T IF Y IP FP ST
Sbjct: 36 MENGYTYEDYKNTAEYLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRST 95
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG +NG + MQGRFH YEGYPL+K P+RV L+GV L+ TNAAGGL
Sbjct: 96 VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLYKVTFPVRVFHLLGVDTLVVTNAAGGL 155
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R L +
Sbjct: 156 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTYKQ 215
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++ GP+FETVAE +L+ G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 216 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 275
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + DY+ +AN EEV+ AGK ++ V+ +++ I
Sbjct: 276 ITNKVIMDYESLEKANWEEVLAAGKQAAQKLEQFVSILMASI 317
>pdb|3KHS|A Chain A, Crystal Structure Of Grouper Iridovirus Purine Nucleoside
Phosphorylase
pdb|3KHS|B Chain B, Crystal Structure Of Grouper Iridovirus Purine Nucleoside
Phosphorylase
pdb|3KHS|C Chain C, Crystal Structure Of Grouper Iridovirus Purine Nucleoside
Phosphorylase
pdb|3KHS|D Chain D, Crystal Structure Of Grouper Iridovirus Purine Nucleoside
Phosphorylase
Length = 285
Score = 267 bits (682), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 130/276 (47%), Positives = 172/276 (62%)
Query: 128 YELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKG 187
Y+L + A +L + IRP +GI+CGSGL I DS+ Y IP FPV +V GH G
Sbjct: 4 YDLAKETAAWLNKQLQIRPVLGIVCGSGLGKIGDSLETSITVAYSDIPNFPVGSVKGHAG 63
Query: 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEV 247
L+FG +NG+ +CM+GRFH YEG+ + P+RV K +GV ++ TNAAGGLNP Y
Sbjct: 64 SLIFGSVNGVSCVCMKGRFHLYEGHTAARATFPMRVFKALGVKIVVLTNAAGGLNPSYRP 123
Query: 248 GDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSI 307
GD M+++DHINL G AG NPL G N+D G RFP M Y+K LR + AR+L MS
Sbjct: 124 GDFMVVRDHINLPGLAGANPLTGPNDDTEGERFPSMTSVYDKTLRKYAISAARELGMSYA 183
Query: 308 VKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV 367
EGVY + GP+FET AE +LR+ G DAVGMST E I A H GM A SLI+N
Sbjct: 184 THEGVYCCVNGPSFETPAECKILRLMGSDAVGMSTAPETIVAKHGGMRCLAVSLISNVIA 243
Query: 368 TDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
++ + AE HEEV++AG+ + ++V ++ I
Sbjct: 244 SNCETPAEPTHEEVLRAGEEASARMTALVKLVIEKI 279
>pdb|1TCU|A Chain A, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Phosphate And
Acetate
pdb|1TCU|B Chain B, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Phosphate And
Acetate
pdb|1TCU|C Chain C, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Phosphate And
Acetate
pdb|1TCV|A Chain A, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Non-detergent
Sulfobetaine 195 And Acetate
pdb|1TCV|B Chain B, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Non-detergent
Sulfobetaine 195 And Acetate
pdb|1TCV|C Chain C, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Non-detergent
Sulfobetaine 195 And Acetate
pdb|1TD1|A Chain A, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Acetate
pdb|1TD1|B Chain B, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Acetate
pdb|1TD1|C Chain C, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Acetate
pdb|3FNQ|A Chain A, Crystal Structure Of Schistosoma Purine Nucleoside
Phosphorylase In Complex With Hypoxanthine
pdb|3FNQ|B Chain B, Crystal Structure Of Schistosoma Purine Nucleoside
Phosphorylase In Complex With Hypoxanthine
pdb|3FNQ|C Chain C, Crystal Structure Of Schistosoma Purine Nucleoside
Phosphorylase In Complex With Hypoxanthine
pdb|3DJF|A Chain A, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In A Complex With Bcx-34
pdb|3DJF|B Chain B, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In A Complex With Bcx-34
pdb|3DJF|C Chain C, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In A Complex With Bcx-34
pdb|3E0Q|A Chain A, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase Complexed With A Novel Monocyclic
Inhibitor
pdb|3E0Q|B Chain B, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase Complexed With A Novel Monocyclic
Inhibitor
pdb|3E0Q|C Chain C, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase Complexed With A Novel Monocyclic
Inhibitor
pdb|3E9R|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With Adenine
pdb|3E9R|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With Adenine
pdb|3E9R|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With Adenine
pdb|3E9Z|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With 6-Chloroguanine
pdb|3E9Z|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With 6-Chloroguanine
pdb|3E9Z|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With 6-Chloroguanine
pdb|3F8W|A Chain A, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Adenosine
pdb|3F8W|B Chain B, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Adenosine
pdb|3F8W|C Chain C, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Adenosine
pdb|3FAZ|A Chain A, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Inosine
pdb|3FAZ|B Chain B, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Inosine
pdb|3FAZ|C Chain C, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Inosine
pdb|3FB1|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase In
Complex With Ribose-1-Phosphate
pdb|3FB1|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase In
Complex With Ribose-1-Phosphate
pdb|3FB1|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase In
Complex With Ribose-1-Phosphate
pdb|3IEX|A Chain A, Schistosoma Purine Nucleoside Phosphorylase In Complex
With Guanosine
pdb|3IEX|B Chain B, Schistosoma Purine Nucleoside Phosphorylase In Complex
With Guanosine
pdb|3IEX|C Chain C, Schistosoma Purine Nucleoside Phosphorylase In Complex
With Guanosine
Length = 287
Score = 255 bits (652), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/275 (45%), Positives = 177/275 (64%)
Query: 129 ELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQ 188
E ++ +A + SI P+IGIICGSGL +AD + D+ PY IP FP ++V GH G
Sbjct: 10 ENVKKVAHHIQKLTSIVPEIGIICGSGLGKLADGVKDKITIPYTKIPNFPQTSVVGHSGN 69
Query: 189 LVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVG 248
L+FG ++G ++ MQGRFH YEGY A+PIRVMKL+GV L+ +NAAGGLN ++G
Sbjct: 70 LIFGTLSGRKVVVMQGRFHMYEGYSNDTVALPIRVMKLLGVKILMVSNAAGGLNRSLKLG 129
Query: 249 DIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIV 308
D +I+KDHI L G NN L+G N++ FG RFP ++ AY++ LR + +A + ++V
Sbjct: 130 DFVILKDHIYLPGLGLNNILVGPNQEAFGTRFPALSNAYDRDLRKLAVQVAEENGFGNLV 189
Query: 309 KEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVT 368
+GVY + GGP +ET AE ML G D VGMST+ EV+ A HCG+ V A SL+TN V
Sbjct: 190 HQGVYVMNGGPCYETPAECTMLLNMGCDVVGMSTIPEVVIARHCGIQVFAVSLVTNISVL 249
Query: 369 DYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
D + + NHEEV+ G R +++S +I+ +
Sbjct: 250 DVESDLKPNHEEVLATGAQRAELMQSWFEKIIEKL 284
>pdb|3ODG|A Chain A, Crystal Structure Of Xanthosine Phosphorylase Bound With
Xanthine From Yersinia Pseudotuberculosis
Length = 287
Score = 204 bits (518), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 150/244 (61%), Gaps = 7/244 (2%)
Query: 144 IRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ 203
+P+I I GSGL + D IT+ Y IP FPVS+V GH G+LV G + G+P+MCM+
Sbjct: 32 FKPQIAFILGSGLGDLVDQITNDTTISYADIPGFPVSSVHGHAGELVLGDLCGVPVMCMK 91
Query: 204 GRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFA 263
GR H+YEG + P+R KL+G L TNAAG L P+ G ++++KDHIN M
Sbjct: 92 GRGHFYEGKGMSIMTNPVRTFKLMGCEFLFCTNAAGSLRPEVLPGSVVMLKDHINTM--- 148
Query: 264 GNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFET 323
PL+G N+DRFGPRF + AY+K LRA IA+ L++ + EGV+ GP FET
Sbjct: 149 PGTPLVGPNDDRFGPRFFSLANAYDKDLRADMAKIAQQLDIP--LTEGVFVSYPGPCFET 206
Query: 324 VAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQ 383
AE+ M++I G D VGMS V EV++A HCG+ V A + ITN + + +HE+ ++
Sbjct: 207 PAEIRMMQIIGGDVVGMSVVPEVLSAAHCGLKVIALTAITN--LAEGLSDVVLSHEQTLK 264
Query: 384 AGKL 387
K+
Sbjct: 265 FAKV 268
>pdb|1YQQ|A Chain A, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQQ|B Chain B, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQQ|C Chain C, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQU|A Chain A, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQU|B Chain B, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQU|C Chain C, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|A Chain A, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|B Chain B, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|C Chain C, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|D Chain D, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|E Chain E, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|F Chain F, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
Length = 277
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 144/242 (59%), Gaps = 7/242 (2%)
Query: 146 PKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGR 205
P++ I GSGL +AD I + Y+ +P FPVSTV GH G+LV G + G+P++CM+GR
Sbjct: 26 PRVAFILGSGLGALADQIENAVAISYEKLPGFPVSTVHGHAGELVLGHLQGVPVVCMKGR 85
Query: 206 FHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN 265
H+YEG + IR KL+G L TNAAG L P+ G ++ +KDHIN M
Sbjct: 86 GHFYEGRGMTIMTDAIRTFKLLGCELLFCTNAAGSLRPEVGAGSLVALKDHINTM---PG 142
Query: 266 NPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVA 325
P++G+N+DRFG RF + AY+ + RA +A++ + EGV+ GPNFET A
Sbjct: 143 TPMVGLNDDRFGERFFSLANAYDAEYRALLQKVAKEEGFP--LTEGVFVSYPGPNFETAA 200
Query: 326 ELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAG 385
E+ M++I G D VGMS V EVI+A HC + V A S ITN D + +H + + A
Sbjct: 201 EIRMMQIIGGDVVGMSVVPEVISARHCDLKVVAVSAITNMAEGLSD--VKLSHAQTLAAA 258
Query: 386 KL 387
+L
Sbjct: 259 EL 260
>pdb|3LA8|A Chain A, The Crystal Structure Of Smu.1229 From Streptococcus
Mutans Ua159
pdb|3LBA|A Chain A, The Crystal Structure Of Smu.1229 From Streptococcus
Mutans Ua159 Bound To Hypoxanthine
Length = 303
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 156/289 (53%), Gaps = 10/289 (3%)
Query: 112 AAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY 171
A++T G G + I FL +P+ G+I GSGL +A+ I + + Y
Sbjct: 22 ASMTGGQQMGRGSMSLLKKIYETRDFLTAKGVQKPEFGLILGSGLGELAEEIENALVLNY 81
Query: 172 DTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTH 231
IP + STV GH G+L++G + G ++ +QGRFHYYEG + PIR+MK +G
Sbjct: 82 ADIPNWGRSTVSGHAGKLIYGELAGRKVLALQGRFHYYEGNSMELVTFPIRIMKALGCQG 141
Query: 232 LLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQL 291
L+ TNAAGG+ + G +M I DHINL G NPL+G N D FG RFP M+ AY
Sbjct: 142 LIVTNAAGGIG--FGPGTLMAISDHINL---TGANPLMGENLDDFGFRFPDMSNAYTADY 196
Query: 292 RAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHH 351
R +A + + + EGVY + GP++ET AE+ + G DAVGMSTV EVI A H
Sbjct: 197 REVAHQVADKIGIK--LDEGVYIGVSGPSYETPAEIRAFKTLGADAVGMSTVPEVIVAVH 254
Query: 352 CGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
G+ V S ITN +E NHEEV+ + K +V I+
Sbjct: 255 SGLKVLGISAITNYAA---GFQSELNHEEVVAVTQQIKEDFKGLVKAIL 300
>pdb|1VMK|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(Tm1596) From Thermotoga Maritima At 2.01 A Resolution
pdb|1VMK|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(Tm1596) From Thermotoga Maritima At 2.01 A Resolution
pdb|1VMK|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(Tm1596) From Thermotoga Maritima At 2.01 A Resolution
Length = 277
Score = 188 bits (478), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 107/264 (40%), Positives = 155/264 (58%), Gaps = 13/264 (4%)
Query: 137 FLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLING 196
F+ + ++ P I II GSG + + D I Y IP+FP TV GH G+LVFG I+
Sbjct: 23 FISERTNLSPDILIILGSGFGPFIEKVEDPVIIDYKDIPHFPQPTVEGHSGKLVFGRISD 82
Query: 197 IPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDH 256
P+M M GRFH YEG+ A P+ + K VGV ++ TNAAG +NP+++ G+I++++D
Sbjct: 83 KPVMIMAGRFHLYEGHDPATVAFPVYLAKYVGVKGVVVTNAAGAINPEFKPGEIILVRDI 142
Query: 257 INLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVI 316
IN M NPL G N+++ GPRFP M+ + + AR + +KEGVY +
Sbjct: 143 INFMF---RNPLRGPNDEKIGPRFPDMSSVVDPEW-------ARKIQERLSLKEGVYIGV 192
Query: 317 GGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEA 376
GP++ET AE+ + G D VGMSTV EVI A HCG+ V FS +TN H
Sbjct: 193 LGPSYETPAEIRVFEKLGADLVGMSTVPEVIAAKHCGLKVVVFSCVTNMAAGI--THGRL 250
Query: 377 NHEEVIQAGKL-RGPMIKSMVTRI 399
+HEEV++ K+ +G + K++ T +
Sbjct: 251 SHEEVVRTTKMAQGKIEKALTTAV 274
>pdb|1G2O|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase From
Mycobacterium Tuberculosis In Complex With A Transition-
State Inhibitor
pdb|1G2O|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase From
Mycobacterium Tuberculosis In Complex With A Transition-
State Inhibitor
pdb|1G2O|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase From
Mycobacterium Tuberculosis In Complex With A Transition-
State Inhibitor
pdb|1I80|A Chain A, Crystal Structure Of M. Tuberculosis Pnp In Complex With
Iminoribitol, 9-Deazahypoxanthine And Phosphate Ion
pdb|1I80|B Chain B, Crystal Structure Of M. Tuberculosis Pnp In Complex With
Iminoribitol, 9-Deazahypoxanthine And Phosphate Ion
pdb|1I80|C Chain C, Crystal Structure Of M. Tuberculosis Pnp In Complex With
Iminoribitol, 9-Deazahypoxanthine And Phosphate Ion
pdb|1N3I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Pnp With
Transition State Analog Dadme-Immh
pdb|1N3I|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Pnp With
Transition State Analog Dadme-Immh
pdb|1N3I|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Pnp With
Transition State Analog Dadme-Immh
pdb|3IOM|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase From
Mycobacterium Tuberculosis In Complex With
2'-Deoxyguanosine
pdb|3IOM|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase From
Mycobacterium Tuberculosis In Complex With
2'-Deoxyguanosine
pdb|3SCZ|A Chain A, Combining Crystallographic, Thermodynamic, And Molecular
Dynamics Studies Of Mycobacterium Tuberculosis Purine
Nucleoside Phosphorylase
pdb|3SCZ|B Chain B, Combining Crystallographic, Thermodynamic, And Molecular
Dynamics Studies Of Mycobacterium Tuberculosis Purine
Nucleoside Phosphorylase
Length = 268
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 139/275 (50%), Gaps = 20/275 (7%)
Query: 129 ELIQSIAKFLLDSISI-RPKIGIICGSG-LSTIADSITDRHIFPYDTIPYFPVSTVPGHK 186
EL + A+ + D I + ++ GSG L +A + + P +P F T GH
Sbjct: 10 ELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQAELPGFVPPTAAGHA 69
Query: 187 GQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYE 246
G+L+ I ++ + GR H YEG+ L P+R + G ++ TNAAGGL D +
Sbjct: 70 GELLSVPIGAHRVLVLAGRIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLRADLQ 129
Query: 247 VGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSS 306
VG ++I DH+NL +PL+G F + AY+ +LR ++AR +
Sbjct: 130 VGQPVLISDHLNLT---ARSPLVGGE-------FVDLTDAYSPRLR----ELARQSDPQ- 174
Query: 307 IVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC 366
+ EGVY+ + GP++ET AE+ ML+ G D VGMSTVHE I A G V SL+TN
Sbjct: 175 -LAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTNLA 233
Query: 367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVS 401
+ +H EV+ AG + +++ +++
Sbjct: 234 AGITGE--PLSHAEVLAAGAASATRMGALLADVIA 266
>pdb|1C3X|A Chain A, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With 8-Iodo-Guanine
pdb|1C3X|B Chain B, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With 8-Iodo-Guanine
pdb|1C3X|C Chain C, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With 8-Iodo-Guanine
pdb|1QE5|A Chain A, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With Phosphate
pdb|1QE5|B Chain B, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With Phosphate
pdb|1QE5|C Chain C, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With Phosphate
Length = 266
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 101/200 (50%), Gaps = 18/200 (9%)
Query: 200 MCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINL 259
+ + R H YEG + +R G L+ TN GGLN ++ G +++ DHINL
Sbjct: 82 LVLGSRTHLYEGKGVRAVVHGVRTAAATGAETLILTNGCGGLNQEWGAGTPVLLSDHINL 141
Query: 260 MGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGP 319
+PL GP F + Y+ +LR ++A ++ + + EGVY+ GP
Sbjct: 142 TA---RSPL-------EGPTFVDLTDVYSPRLR----ELAHRVDPT--LPEGVYAQFPGP 185
Query: 320 NFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHE 379
++ET AE+ M I G D VGMST E I A HCG+ V SL+TN +H
Sbjct: 186 HYETPAEVRMAGILGADLVGMSTTLEAIAARHCGLEVLGVSLVTNLAAGISP--TPLSHA 243
Query: 380 EVIQAGKLRGPMIKSMVTRI 399
EVI+AG+ GP I +++ I
Sbjct: 244 EVIEAGQAAGPRISALLADI 263
>pdb|1CB0|A Chain A, Structure Of Human 5'-deoxy-5'-methylthioadenosine
Phosphorylase At 1.7 A Resolution
pdb|1CG6|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate At 1.7 A
Resolution
pdb|1K27|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase In Complex With A Transition State
Analogue
pdb|1SD1|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Formycin A
pdb|1SD2|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With 5'-Methylthiotubercidin
pdb|3OZC|A Chain A, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase In Complex With Pcl-Phenylthiodadmeimma
pdb|3OZD|A Chain A, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase In Complex With Pcl-Phenylthiodadmeimma
pdb|3OZD|B Chain B, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase In Complex With Pcl-Phenylthiodadmeimma
pdb|3OZE|A Chain A, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|B Chain B, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|C Chain C, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|D Chain D, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|E Chain E, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|F Chain F, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
Length = 283
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 123/281 (43%), Gaps = 41/281 (14%)
Query: 147 KIGIICGSGLS--TIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIP--IMCM 202
KIGII G+GL I + T++++ DT P+ S L+ G I + ++
Sbjct: 11 KIGIIGGTGLDDPEILEGRTEKYV---DT-PFGKPSDA------LILGKIKNVDCVLLAR 60
Query: 203 QGRFHYYEGYPLWKCAMPIRV--------MKLVGVTHLLATNAAGGLNPDYEVGDIMIIK 254
GR H MP +V +K G TH++ T A G L + + GDI+II
Sbjct: 61 HGRQHTI---------MPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIID 111
Query: 255 DHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYS 314
I+ + G + G PM + + + R ++ A+ L + K G
Sbjct: 112 QFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLRCHSK-GTMV 170
Query: 315 VIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYD--- 371
I GP F + AE M R G D + M+TV EV+ A G+ + ++ TDYD
Sbjct: 171 TIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAM-----ATDYDCWK 225
Query: 372 DHAEA-NHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLNST 411
+H EA + + V++ K KS++ + IG + + T
Sbjct: 226 EHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSET 266
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 45/57 (78%), Gaps = 4/57 (7%)
Query: 3 VYYIDAADA----EMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGI 55
V Y++ ADA EM ELVE+E+RELLTE G+KG+E P + GSALCALE ++PE+G+
Sbjct: 123 VVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGL 179
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSY-TYELIQSIAKFLLDSISI 144
KPH N+GTIGHVDHGKTTLTAAITK L EG + YE I + + I+I
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITI 54
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 44/57 (77%), Gaps = 4/57 (7%)
Query: 3 VYYIDAADA----EMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGI 55
V Y++ ADA E ELVE+E+RELLTE G+KG+E P + GSALCALE ++PE+G+
Sbjct: 134 VVYVNKADAVQDSEXVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGL 190
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSY-TYELIQSIAKFLLDSIS 143
K+ Y RDKPH N+GTIGHVDHGKTTLTAAITK L EG + YE I + + I+
Sbjct: 5 KKTYVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGIT 64
Query: 144 I 144
I
Sbjct: 65 I 65
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 78 SRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
S++ + K+ + R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 280 SKQSHMSKEKFERTKPHVNVGTIGHVDHGKTTLTAAIT 317
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 21 MRELLTEMGWKGDEVPFVKGSALCALEG 48
+RELL++ + GD+ P V+GSAL ALEG
Sbjct: 438 VRELLSQYDFPGDDTPIVRGSALKALEG 465
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 78 SRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGS 125
S++ + K+ + R KPH N+GTIGHVDHGKTTLTAAIT L + G+
Sbjct: 280 SKQSHMSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGA 327
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 21 MRELLTEMGWKGDEVPFVKGSALCALEGK-EPEIGIIPL 58
+RELL++ + GD+ P V+GSAL ALEG E E I+ L
Sbjct: 438 VRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILEL 476
>pdb|1V4N|A Chain A, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase
Homologue From Sulfolobus Tokodaii
pdb|1V4N|B Chain B, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase
Homologue From Sulfolobus Tokodaii
pdb|1V4N|C Chain C, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase
Homologue From Sulfolobus Tokodaii
Length = 281
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 221 IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRF-GPR 279
I +K +GV ++A +A G L DY+ GD ++ I++ G F GP
Sbjct: 77 IWALKSLGVKWVIAVSAVGSLRLDYKPGDFVVPNQFIDMTK--------GRTYTFFDGPT 128
Query: 280 FP--PMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLR-ICGVD 336
M + + LR+ LD A+DL +++ K G Y I GP F T AE + + + D
Sbjct: 129 VAHVSMADPFCEHLRSIILDSAKDLGITTHDK-GTYICIEGPRFSTRAESIVWKEVFKAD 187
Query: 337 AVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAE--ANHEEVIQAGKLRGPMIKS 394
+GM+ V EV A M + + VTDYD A+ EEV + +K
Sbjct: 188 IIGMTLVPEVNLACEAEMCYSVIGM-----VTDYDVFADIPVTAEEVTKVMAENTAKVKK 242
Query: 395 MVTRIVSYIGE 405
++ ++ + E
Sbjct: 243 LLYEVIRRLPE 253
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K+ + R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 2 KEKFERTKPHVNVGTIGHVDHGKTTLTAAIT 32
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 21 MRELLTEMGWKGDEVPFVKGSALCALEG 48
+RELL++ + GD+ P V+GSAL ALEG
Sbjct: 153 VRELLSQYDFPGDDTPIVRGSALKALEG 180
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K+ + R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 2 KEKFERTKPHVNVGTIGHVDHGKTTLTAAIT 32
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 21 MRELLTEMGWKGDEVPFVKGSALCALEG 48
+RELL++ + GD+ P V+GSAL ALEG
Sbjct: 153 VRELLSQYDFPGDDTPIVRGSALKALEG 180
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K+ + R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 3 KEKFERTKPHVNVGTIGHVDHGKTTLTAAIT 33
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 21 MRELLTEMGWKGDEVPFVKGSALCALEG 48
+RELL++ + GD+ P V+GSAL ALEG
Sbjct: 154 VRELLSQYDFPGDDTPIVRGSALKALEG 181
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K+ + R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 3 KEKFERTKPHVNVGTIGHVDHGKTTLTAAIT 33
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 21 MRELLTEMGWKGDEVPFVKGSALCALEG 48
+RELL++ + GD+ P V+GSAL ALEG
Sbjct: 154 VRELLSQYDFPGDDTPIVRGSALKALEG 181
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K+ + R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 2 KEKFERTKPHVNVGTIGHVDHGKTTLTAAIT 32
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 21 MRELLTEMGWKGDEVPFVKGSALCALEG 48
+RELL++ + GD+ P V+GSAL ALEG
Sbjct: 153 VRELLSQYDFPGDDTPIVRGSALKALEG 180
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K+ + R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 2 KEKFERTKPHVNVGTIGHVDHGKTTLTAAIT 32
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 21 MRELLTEMGWKGDEVPFVKGSALCALEG 48
+RELL++ + GD+ P V+GSAL ALEG
Sbjct: 139 VRELLSQYDFPGDDTPIVRGSALKALEG 166
>pdb|2A8Y|A Chain A, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|B Chain B, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|C Chain C, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|D Chain D, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|E Chain E, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|F Chain F, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|G Chain G, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|H Chain H, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|I Chain I, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|J Chain J, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|K Chain K, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|L Chain L, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|3T94|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase (Mtap) Ii Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate
pdb|3T94|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase (Mtap) Ii Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate
pdb|3T94|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase (Mtap) Ii Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate
pdb|3T94|D Chain D, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase (Mtap) Ii Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate
pdb|3T94|E Chain E, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase (Mtap) Ii Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate
pdb|3T94|F Chain F, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase (Mtap) Ii Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate
Length = 270
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 22/170 (12%)
Query: 221 IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRF--GP 278
I +K +GV +++ +A G L DY++GD +I I++ E F GP
Sbjct: 76 IWALKELGVRWVISVSAVGSLRMDYKLGDFVIPDQFIDMTKN---------REYSFFDGP 126
Query: 279 RFP--PMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLR-ICGV 335
M + LR ++ A++LN+ + + G Y I GP F T AE R +
Sbjct: 127 VVAHVSMADPFCNSLRKLAIETAKELNIKT-HESGTYICIEGPRFSTRAESRTWREVYKA 185
Query: 336 DAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAE--ANHEEVIQ 383
D +GM+ V EV A M ++ VTDYD AE EEV +
Sbjct: 186 DIIGMTLVPEVNLACEAQMCYATIAM-----VTDYDVFAEIPVTAEEVTR 230
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2 KGEFVRTKPHVNVGTIGHVDHGKTTLTAALT 32
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE 47
D E+ +LVEME+R+LL + + GDEVP ++GSAL ALE
Sbjct: 143 DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 3 KGEFVRTKPHVNVGTIGHVDHGKTTLTAALT 33
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE 47
D E+ +LVEME+R+LL + + GDEVP ++GSAL ALE
Sbjct: 144 DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 181
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2 KGEFVRTKPHVNVGTIGHVDHGKTTLTAALT 32
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE 47
D E+ +LVEME+R+LL + + GDEVP ++GSAL ALE
Sbjct: 143 DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2 KGEFVRTKPHVNVGTIGHVDHGKTTLTAALT 32
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE 47
D E+ +LVEME+R+LL + + GDEVP ++GSAL ALE
Sbjct: 143 DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2 KGEFVRTKPHVNVGTIGHVDHGKTTLTAALT 32
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE 47
D E+ +LVEME+R+LL + + GDEVP ++GSAL ALE
Sbjct: 143 DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2 KGEFIRTKPHVNVGTIGHVDHGKTTLTAALT 32
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE 47
D E+ +LVEME+R+LL + + GDEVP ++GSAL ALE
Sbjct: 143 DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2 KGEFIRTKPHVNVGTIGHVDHGKTTLTAALT 32
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE 47
D E+ +LVEME+R+LL + + GDEVP ++GSAL ALE
Sbjct: 143 DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2 KGEFIRTKPHVNVGTIGHVDHGKTTLTAALT 32
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE 47
D E+ +LVEME+R+LL + + GDEVP ++GSAL ALE
Sbjct: 143 DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2 KGEFIRTKPHVNVGTIGHVDHGKTTLTAALT 32
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE 47
D E+ +LVEME+R+LL + + GDEVP ++GSAL ALE
Sbjct: 143 DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
K + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2 KGEFIRTKPHVNVGTIGHVDHGKTTLTAALT 32
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE 47
D E+ +LVEME+R+LL + + GDEVP ++GSAL ALE
Sbjct: 143 DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/24 (91%), Positives = 23/24 (95%)
Query: 92 KPHCNIGTIGHVDHGKTTLTAAIT 115
KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAIT 24
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 21 MRELLTEMGWKGDEVPFVKGSALCALEG 48
+RELL++ + GD+ P V+GSAL ALEG
Sbjct: 145 VRELLSQYDFPGDDTPIVRGSALKALEG 172
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGS 125
KPH N+GTIGHVDHGKTTLTAAIT L + G+
Sbjct: 2 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGA 35
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 24/28 (85%)
Query: 88 YSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
+ R K H N+GTIGHVDHGKTTLTAA+T
Sbjct: 5 FIRTKRHVNVGTIGHVDHGKTTLTAALT 32
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE 47
D E+ +LVEME+R+LL + ++GDEV ++GSAL ALE
Sbjct: 143 DRELLDLVEMEVRDLLNQYEFRGDEVRVIRGSALLALE 180
>pdb|1WTA|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine From
Aeropyrum Pernix (R32 Form)
Length = 275
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 98/240 (40%), Gaps = 32/240 (13%)
Query: 144 IRPKIGIICGSGL---STIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIM 200
+R +G+I GSGL + + + + PY F +V G + G+ +
Sbjct: 10 VRAHVGVIGGSGLYDPGIVENPVEVKVSTPYGNPSDF-----------IVVGDVAGVKVA 58
Query: 201 CM--QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHIN 258
+ GR H + + I +K +GV +++ +A G L DY GD ++ I+
Sbjct: 59 FLPRHGRGHRIPPHAI-NYRANIWALKALGVKWVISVSAVGSLREDYRPGDFVVPDQFID 117
Query: 259 LMGFAGNNPLLGVNEDRFGP--RFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVI 316
+ + GP M + + LR +D R L ++ + G Y I
Sbjct: 118 MTKNRRHYTFYD------GPVTVHVSMADPFCEDLRQRLIDSGRRLGY-TVHERGTYVCI 170
Query: 317 GGPNFETVAELNMLR-ICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAE 375
GP F T AE + + + D +GM+ V E+ A + ++ VTDYD A+
Sbjct: 171 EGPRFSTRAESRVWKDVFKADIIGMTLVPEINLACEAQLCYATLAM-----VTDYDVWAD 225
>pdb|3OZB|A Chain A, Crystal Structure Of 5'-Methylthioinosine Phosphorylase
From Psedomonas Aeruginosa In Complex With Hypoxanthine
pdb|3OZB|B Chain B, Crystal Structure Of 5'-Methylthioinosine Phosphorylase
From Psedomonas Aeruginosa In Complex With Hypoxanthine
pdb|3OZB|C Chain C, Crystal Structure Of 5'-Methylthioinosine Phosphorylase
From Psedomonas Aeruginosa In Complex With Hypoxanthine
pdb|3OZB|D Chain D, Crystal Structure Of 5'-Methylthioinosine Phosphorylase
From Psedomonas Aeruginosa In Complex With Hypoxanthine
pdb|3OZB|E Chain E, Crystal Structure Of 5'-Methylthioinosine Phosphorylase
From Psedomonas Aeruginosa In Complex With Hypoxanthine
pdb|3OZB|F Chain F, Crystal Structure Of 5'-Methylthioinosine Phosphorylase
From Psedomonas Aeruginosa In Complex With Hypoxanthine
Length = 259
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 92/220 (41%), Gaps = 21/220 (9%)
Query: 150 IICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKG-----QLVFGLINGIPIMCMQG 204
II G+GL+ + + +T P +T PY + P +G +++F +G P
Sbjct: 20 IIGGTGLTQL-EGLTLSESLPIET-PYG-APSAPLQRGRYAGREVLFLARHGHPHRFPPH 76
Query: 205 RFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264
+ +Y LW +K G ++A NA GG++ G + + I+
Sbjct: 77 QVNYRAN--LW-------ALKQAGAEAVIAVNAVGGIHAAMGTGHLCVPHQLIDYTSGRE 127
Query: 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETV 324
+ G E F + Y++ LR ++ R L ++ GVY+ GP ETV
Sbjct: 128 HTYFAGDIEHVTHIDF---SHPYDEPLRQRLIEALRALGLAH-SSHGVYACTQGPRLETV 183
Query: 325 AELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364
AE+ L G D VGM+ + E A + +L+ N
Sbjct: 184 AEIARLERDGNDIVGMTGMPEAALARELDLPYACLALVVN 223
>pdb|4GLF|A Chain A, Crystal Structure Of Methylthioadenosine Phosphorylase
Sourced From An Antarctic Soil Metagenomic Library
pdb|4GLJ|A Chain A, Crystal Structure Of Methylthioadenosine Phosphorylase In
Complex With Rhodamine B
Length = 297
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 32/228 (14%)
Query: 148 IGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFH 207
I II GSGL + ++T++ +T PY S +V G +NG+ + +
Sbjct: 16 IAIIGGSGLYQM-QALTNKRSVKIET-PYGEPS------DDIVLGELNGVTVAFLT---R 64
Query: 208 YYEGYPLWKCAMPIRV----MKLVGVTHLLATNAAGGLNP-----DYEVGDIMIIKDHIN 258
+ +G+ L +P R +K +GV ++++ +A G L D + D MI
Sbjct: 65 HGQGHRLTPSEVPYRANIYALKTLGVRYIVSVSAVGSLQETLKPLDMVIPDQMIDMTKQR 124
Query: 259 LMGFAGNNPLLGVN-EDRFGPRFPP-MNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVI 316
+ F G+ + V+ D P + +AY+ D+ + Y I
Sbjct: 125 VSTFFGDGAVAHVSMADPLCPEVADILIRAYDNA----------DIADGQCHAKATYVCI 174
Query: 317 GGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364
GP F T AE + R D +GM+ + E A + +L+T+
Sbjct: 175 EGPQFSTRAESHWYRQMQADIIGMTNMPEAKLAREASIAYATLALVTD 222
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 88 YSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
+ + +P NIG +GHVDHGKTTL AIT
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAIT 29
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 88 YSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
+ + +P NIG +GHVDHGKTTL AIT
Sbjct: 3 WPKVQPEVNIGVVGHVDHGKTTLVQAIT 30
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 88 YSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
+ + +P NIG +GHVDHGKTTL AIT
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAIT 29
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 88 YSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
+ + +P NIG +GHVDHGKTTL AIT
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAIT 29
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 55/135 (40%), Gaps = 29/135 (21%)
Query: 92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAK----------FLLDS 141
K H NI IGHVD GK+TL I + GM+ T E I+ AK + LDS
Sbjct: 41 KEHVNIVFIGHVDAGKSTLGGNIL--FLTGMVDKRTMEKIEREAKEAGKESWYLSWALDS 98
Query: 142 ISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLING----- 196
S + G G R F + F + PGHKG V +ING
Sbjct: 99 TSEEREKGKTVEVG----------RAYFETEH-RRFSLLDAPGHKG-YVTNMINGASQAD 146
Query: 197 IPIMCMQGRFHYYEG 211
I ++ + R +E
Sbjct: 147 IGVLVISARRGEFEA 161
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 94 HCNIGTIGHVDHGKTTLTAAIT 115
NIG +GHVDHGKTTLT A+T
Sbjct: 10 EVNIGXVGHVDHGKTTLTKALT 31
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 94 HCNIGTIGHVDHGKTTLTAAIT 115
NIG +GHVDHGKTTLT A+T
Sbjct: 11 EVNIGMVGHVDHGKTTLTKALT 32
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 94 HCNIGTIGHVDHGKTTLTAAIT 115
NIG +GHVDHGKTTLT A+T
Sbjct: 10 EVNIGMVGHVDHGKTTLTKALT 31
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 94 HCNIGTIGHVDHGKTTLTAAIT 115
NIG +GHVDHGKTTLT A+T
Sbjct: 10 EVNIGMVGHVDHGKTTLTKALT 31
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 20/113 (17%)
Query: 92 KPHCNIGTIGHVDHGKTTLTAAI--TKGLMEGMLGSYTYELIQSIAK------FLLDSIS 143
KPH N+ IGHVDHGK+TL + +G ++ E + + K FLLD +
Sbjct: 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLK 63
Query: 144 IRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLING 196
+ G+ TI + Y +F + PGH+ V +I G
Sbjct: 64 EERERGV-------TINLTFMRFETKKY----FFTIIDAPGHR-DFVKNMITG 104
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 92 KPHCNIGTIGHVDHGKTTLTAAIT 115
+ NIG +GHVDHGKT+LT A+T
Sbjct: 6 QAEVNIGMVGHVDHGKTSLTKALT 29
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 91 DKPHCNIGTIGHVDHGKTTL 110
+KPH N+ IGHVDHGK+TL
Sbjct: 3 EKPHMNLVVIGHVDHGKSTL 22
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 91 DKPHCNIGTIGHVDHGKTTL 110
+KPH N+ IGHVDHGK+TL
Sbjct: 6 EKPHMNLVVIGHVDHGKSTL 25
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 21 MRELLTEMGWKGDEVPFVKGSALCALEG 48
+RELL++ + GD+ P V+GSAL ALEG
Sbjct: 95 VRELLSQYDFPGDDTPIVRGSALKALEG 122
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 21 MRELLTEMGWKGDEVPFVKGSALCALEG 48
+RELL++ + GD+ P V+GSAL ALEG
Sbjct: 95 VRELLSQYDFPGDDTPIVRGSALKALEG 122
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116
D + N+G GH+DHGKTTL+ +T+
Sbjct: 16 DFKNINLGIFGHIDHGKTTLSKVLTE 41
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 22/137 (16%)
Query: 33 DEVPFVKGSALCALEGKEPEI------GIIPLYPNDKF--------------EINKLNVF 72
DE+ F KG + + +P+ G+ L+P++ ++ L+
Sbjct: 33 DELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSDPSQQWCADLQTLDTM 92
Query: 73 VPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQ 132
P+ R+GY + + + ++ ++ + V + + +T+G M + ++ ELI
Sbjct: 93 QPIERKRQGYIHELIQTEERYMADLQLVVEVFQKRMAESGFLTEGEMALIFVNWK-ELIM 151
Query: 133 SIAKFLLDSISIRPKIG 149
S K LL ++ +R K G
Sbjct: 152 SNTK-LLKALRVRKKTG 167
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAK 136
K H N+ IGHVD GK+T+ I + GM+ T E + AK
Sbjct: 15 KEHVNVVFIGHVDAGKSTIGGQIM--YLTGMVDKRTLEKYEREAK 57
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 96 NIGTIGHVDHGKTTLTAAI 114
NIG + HVD GKTTLT ++
Sbjct: 4 NIGVLAHVDAGKTTLTESL 22
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 90 RDKPHCNIGTIGHVDHGKTTLTA 112
++K H N+ IGHVD GK+T T
Sbjct: 3 KEKSHINVVVIGHVDSGKSTTTG 25
>pdb|2YZI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
pdb|2YZI|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 138
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 220 PIRV---MKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGF 262
PI+V KL+GV + A L +++VG +++I D N++GF
Sbjct: 8 PIKVYXTKKLLGVKPSTSVQEASRLXXEFDVGSLVVINDDGNVVGF 53
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 96 NIGTIGHVDHGKTTLTAAITK 116
N+ I HVDHGK+TLT ++ +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQ 41
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 96 NIGTIGHVDHGKTTLTAAITK 116
N+ I HVDHGK+TLT ++ +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQ 41
>pdb|1XVU|A Chain A, Crystal Structure Of Caib Mutant D169a In Complex With
Coenzyme A
pdb|1XVV|A Chain A, Crystal Structure Of Caib Mutant D169a In Complex With
Carnitinyl-Coa
Length = 408
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 203 QGRFHYYEGYPLWKCAMPIRVMKLVGVTHL 232
+G+ YY G L+KCA VM+LVG+T +
Sbjct: 230 KGKDPYYAGCGLYKCADGYIVMELVGITQI 259
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 63 KFEINKLNVFVPLINSRRGYAEKQVYSRDKPHC-NIGTIGHVDHGKTTLTAAIT 115
KF ++N + + S + + EK + S + + +IG +G+ + GKT+L ++T
Sbjct: 147 KFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLT 200
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 63 KFEINKLNVFVPLINSRRGYAEKQVYSRDKPHC-NIGTIGHVDHGKTTLTAAIT 115
KF ++N + + S + + EK + S + + +IG +G+ + GKT+L ++T
Sbjct: 147 KFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLT 200
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 63 KFEINKLNVFVPLINSRRGYAEKQVYSRDKPHC-NIGTIGHVDHGKTTLTAAIT 115
KF ++N + + S + + EK + S + + +IG +G+ + GKT+L ++T
Sbjct: 147 KFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLT 200
>pdb|3DWU|A Chain A, Transition-State Model Conformation Of The Switch I Region
Fitted Into The Cryo-Em Map Of The Eef2.80s.Alf4.Gdp
Complex
Length = 46
Score = 28.5 bits (62), Expect = 6.7, Method: Composition-based stats.
Identities = 12/13 (92%), Positives = 13/13 (100%)
Query: 103 VDHGKTTLTAAIT 115
VDHGKTTLTAA+T
Sbjct: 1 VDHGKTTLTAALT 13
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 93 PHCNIGTI-GHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLL 139
P + TI GHVDHGKTTL + K + M + Q I FL+
Sbjct: 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGG---ITQHIGAFLV 46
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 100 IGHVDHGKTTLTAAI 114
+GHVDHGKTTL AI
Sbjct: 14 MGHVDHGKTTLLDAI 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,609,278
Number of Sequences: 62578
Number of extensions: 539442
Number of successful extensions: 1263
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1133
Number of HSP's gapped (non-prelim): 123
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)