Query psy9643
Match_columns 412
No_of_seqs 391 out of 3277
Neff 7.0
Searched_HMMs 46136
Date Sat Aug 17 00:56:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3984|consensus 100.0 1.7E-66 3.6E-71 475.2 21.2 281 124-404 3-285 (286)
2 TIGR01698 PUNP purine nucleoti 100.0 1.3E-59 2.8E-64 444.2 23.4 237 147-401 1-237 (237)
3 TIGR01699 XAPA xanthosine phos 100.0 1.1E-58 2.4E-63 442.0 26.9 248 147-401 1-248 (248)
4 PRK08202 purine nucleoside pho 100.0 3.8E-58 8.2E-63 445.9 28.5 269 128-403 3-272 (272)
5 COG0005 Pnp Purine nucleoside 100.0 7.8E-56 1.7E-60 419.2 21.3 258 133-403 4-262 (262)
6 TIGR01700 PNPH purine nucleosi 100.0 2.3E-52 4.9E-57 400.7 25.5 247 147-400 1-248 (249)
7 PRK08931 5'-methylthioadenosin 100.0 2.4E-52 5.2E-57 404.8 24.7 239 145-407 3-251 (289)
8 PRK07823 5'-methylthioadenosin 100.0 6.7E-52 1.5E-56 397.7 24.7 238 144-406 4-245 (264)
9 PRK07432 5'-methylthioadenosin 100.0 4.8E-51 1E-55 395.5 24.7 244 145-405 3-252 (290)
10 PRK08564 5'-methylthioadenosin 100.0 7.1E-51 1.5E-55 392.5 25.6 242 144-406 6-253 (267)
11 PRK09136 5'-methylthioadenosin 100.0 3.5E-49 7.7E-54 376.7 24.8 235 147-401 1-243 (245)
12 TIGR01697 PNPH-PUNA-XAPA inosi 100.0 1.9E-46 4E-51 359.9 25.3 247 147-400 1-247 (248)
13 PRK08666 5'-methylthioadenosin 100.0 1.6E-44 3.5E-49 348.9 26.7 239 146-406 2-247 (261)
14 KOG3985|consensus 100.0 2.7E-44 5.8E-49 327.3 19.6 249 145-407 9-262 (283)
15 TIGR01694 MTAP 5'-deoxy-5'-met 100.0 8.8E-39 1.9E-43 305.6 24.4 232 147-401 1-240 (241)
16 KOG0460|consensus 99.9 1.2E-26 2.5E-31 224.3 5.2 154 82-268 42-212 (449)
17 COG5256 TEF1 Translation elong 99.9 6.6E-25 1.4E-29 218.2 5.9 200 89-305 2-246 (428)
18 COG0050 TufB GTPases - transla 99.9 1.3E-24 2.8E-29 206.9 5.4 152 85-269 3-171 (394)
19 PF01048 PNP_UDP_1: Phosphoryl 99.8 1.9E-21 4.1E-26 183.9 9.5 203 187-401 32-234 (234)
20 KOG0460|consensus 99.8 9.3E-22 2E-26 190.5 5.7 83 3-90 174-265 (449)
21 PRK06714 S-adenosylhomocystein 99.8 1.3E-19 2.9E-24 172.7 16.1 196 188-409 33-234 (236)
22 PRK05584 5'-methylthioadenosin 99.8 3.6E-19 7.8E-24 168.8 16.9 192 188-403 32-229 (230)
23 PRK14697 bifunctional 5'-methy 99.8 4.6E-19 1E-23 168.8 15.4 190 188-405 33-229 (233)
24 PRK06698 bifunctional 5'-methy 99.8 8.9E-19 1.9E-23 182.4 17.3 193 188-406 33-230 (459)
25 TIGR01704 MTA/SAH-Nsdase 5'-me 99.8 1.7E-18 3.8E-23 164.3 16.6 190 188-403 31-228 (228)
26 KOG0458|consensus 99.8 8.5E-20 1.8E-24 187.6 8.0 141 87-257 170-342 (603)
27 TIGR03468 HpnG hopanoid-associ 99.8 2.7E-18 6E-23 161.2 12.7 152 219-402 36-188 (212)
28 PRK07164 5'-methylthioadenosin 99.7 4.4E-17 9.5E-22 153.5 14.5 178 188-403 36-218 (218)
29 COG0050 TufB GTPases - transla 99.7 1.2E-18 2.6E-23 166.3 3.4 106 3-113 132-259 (394)
30 COG0775 Pfs Nucleoside phospho 99.7 5E-16 1.1E-20 148.0 18.1 194 188-403 34-233 (234)
31 PLN02584 5'-methylthioadenosin 99.7 2.4E-16 5.2E-21 151.5 16.0 193 188-405 45-243 (249)
32 PRK13374 purine nucleoside pho 99.7 3.5E-16 7.6E-21 149.0 16.8 157 188-367 47-208 (233)
33 PLN00043 elongation factor 1-a 99.7 6.8E-18 1.5E-22 174.9 5.1 150 89-252 2-169 (447)
34 TIGR00107 deoD purine-nucleosi 99.7 1.3E-15 2.8E-20 145.0 17.4 177 188-388 43-221 (232)
35 PRK05819 deoD purine nucleosid 99.7 2.7E-15 5.8E-20 143.1 18.1 157 188-367 46-207 (235)
36 COG0813 DeoD Purine-nucleoside 99.7 1.9E-15 4.1E-20 138.9 16.3 183 190-396 49-233 (236)
37 TIGR01718 Uridine-psphlse urid 99.7 5.1E-15 1.1E-19 142.0 17.6 154 188-366 44-215 (245)
38 PRK07115 AMP nucleosidase; Pro 99.6 2.5E-15 5.3E-20 144.9 15.0 150 196-367 59-211 (258)
39 PTZ00141 elongation factor 1- 99.6 1.2E-16 2.6E-21 165.7 5.8 152 90-255 3-172 (446)
40 TIGR03664 fut_nucase futalosin 99.6 2.2E-15 4.7E-20 142.6 12.3 166 190-368 22-199 (222)
41 PRK07077 hypothetical protein; 99.6 8.1E-15 1.7E-19 139.5 13.7 150 222-397 47-208 (238)
42 PRK11178 uridine phosphorylase 99.6 4.5E-14 9.8E-19 135.9 18.2 155 188-366 49-221 (251)
43 COG1217 TypA Predicted membran 99.6 8.8E-16 1.9E-20 154.4 6.3 133 93-251 4-141 (603)
44 TIGR01705 MTA/SAH-nuc-hyp 5'-m 99.6 9.2E-15 2E-19 136.3 12.4 164 214-407 38-209 (212)
45 COG2895 CysN GTPases - Sulfate 99.6 9.7E-16 2.1E-20 149.8 5.3 139 91-259 3-169 (431)
46 PRK08236 hypothetical protein; 99.6 1.4E-14 3.1E-19 136.0 13.0 155 221-384 44-203 (212)
47 TIGR01721 AMN-like AMP nucleos 99.6 1.9E-14 4.1E-19 138.9 13.9 129 225-367 83-212 (266)
48 PRK06026 5'-methylthioadenosin 99.6 2.1E-14 4.6E-19 134.1 12.4 160 215-405 39-207 (212)
49 PLN03127 Elongation factor Tu; 99.6 7.5E-16 1.6E-20 159.7 2.7 123 86-242 53-191 (447)
50 KOG0459|consensus 99.6 1.3E-15 2.8E-20 150.8 3.9 138 91-255 76-244 (501)
51 PRK05124 cysN sulfate adenylyl 99.5 2.1E-15 4.7E-20 157.5 3.7 127 88-242 21-174 (474)
52 TIGR01719 euk_UDPppase uridine 99.5 2.2E-13 4.7E-18 133.6 17.5 158 192-367 73-255 (287)
53 KOG0462|consensus 99.5 4.8E-15 1E-19 151.6 4.9 231 88-349 55-325 (650)
54 PRK12736 elongation factor Tu; 99.5 2.4E-15 5.1E-20 153.9 1.9 125 85-242 3-142 (394)
55 TIGR00485 EF-Tu translation el 99.5 2.1E-15 4.5E-20 154.3 1.2 126 85-243 3-143 (394)
56 PRK12735 elongation factor Tu; 99.5 3.1E-15 6.8E-20 153.1 2.3 125 85-242 3-142 (396)
57 PRK08292 AMP nucleosidase; Pro 99.5 3.7E-13 8E-18 138.1 16.6 155 191-367 270-436 (489)
58 PLN03126 Elongation factor Tu; 99.5 3.4E-15 7.4E-20 155.7 1.2 133 79-242 63-211 (478)
59 COG5257 GCD11 Translation init 99.5 6E-15 1.3E-19 142.7 2.5 137 92-261 8-173 (415)
60 PRK12317 elongation factor 1-a 99.5 2.4E-14 5.2E-19 147.8 6.4 136 90-242 2-153 (425)
61 TIGR01717 AMP-nucleosdse AMP n 99.5 7.5E-13 1.6E-17 135.5 16.5 157 189-367 256-424 (477)
62 TIGR02034 CysN sulfate adenyly 99.5 7.4E-15 1.6E-19 150.8 1.3 121 95-242 1-147 (406)
63 PRK00049 elongation factor Tu; 99.5 2.1E-14 4.6E-19 147.0 4.6 133 85-242 3-142 (396)
64 PTZ00327 eukaryotic translatio 99.5 1.3E-14 2.9E-19 150.5 1.5 124 87-244 28-187 (460)
65 TIGR00483 EF-1_alpha translati 99.5 5.5E-14 1.2E-18 145.2 5.9 138 89-242 2-155 (426)
66 CHL00071 tufA elongation facto 99.4 2.1E-14 4.7E-19 147.5 2.1 126 85-242 3-142 (409)
67 KOG0052|consensus 99.4 1.3E-13 2.7E-18 137.3 5.0 135 89-253 2-167 (391)
68 COG0480 FusA Translation elong 99.4 4.6E-14 1E-18 152.2 1.1 132 93-246 9-146 (697)
69 PF00009 GTP_EFTU: Elongation 99.4 2.8E-14 6E-19 131.0 -0.6 122 92-241 1-135 (188)
70 COG0481 LepA Membrane GTPase L 99.4 2.9E-13 6.3E-18 136.8 5.6 125 90-240 5-140 (603)
71 KOG0461|consensus 99.4 6.6E-13 1.4E-17 129.5 6.8 144 94-269 7-167 (522)
72 PRK05506 bifunctional sulfate 99.3 3.5E-13 7.5E-18 145.8 3.4 126 90-242 20-171 (632)
73 cd01884 EF_Tu EF-Tu subfamily. 99.3 1.4E-13 3E-18 127.8 0.2 126 93-242 1-132 (195)
74 KOG0466|consensus 99.3 2.2E-14 4.8E-19 137.8 -5.5 175 62-261 18-212 (466)
75 cd01883 EF1_alpha Eukaryotic e 99.3 2E-12 4.4E-17 121.8 6.3 141 96-250 1-159 (219)
76 COG2820 Udp Uridine phosphoryl 99.3 7.1E-11 1.5E-15 110.5 15.3 159 188-368 49-221 (248)
77 PRK05634 nucleosidase; Provisi 99.3 5.4E-12 1.2E-16 116.2 5.8 131 226-390 47-178 (185)
78 cd01885 EF2 EF2 (for archaea a 99.3 1.6E-12 3.5E-17 123.0 2.1 124 95-242 1-139 (222)
79 TIGR01394 TypA_BipA GTP-bindin 99.2 1.5E-12 3.2E-17 139.4 1.5 116 95-242 2-130 (594)
80 cd04166 CysN_ATPS CysN_ATPS su 99.1 2E-11 4.4E-16 114.0 2.2 126 96-242 1-144 (208)
81 COG3276 SelB Selenocysteine-sp 99.1 2.6E-11 5.7E-16 122.3 2.8 106 95-244 1-119 (447)
82 cd01886 EF-G Elongation factor 99.1 2.7E-11 5.9E-16 117.9 2.5 124 96-242 1-130 (270)
83 PRK07560 elongation factor EF- 99.1 2.1E-11 4.5E-16 134.0 1.8 136 88-245 14-156 (731)
84 PLN00116 translation elongatio 99.1 2.1E-11 4.7E-16 135.6 1.8 144 89-246 14-168 (843)
85 PRK04000 translation initiatio 99.1 3.1E-11 6.6E-16 124.3 2.0 132 89-244 4-155 (411)
86 PTZ00416 elongation factor 2; 99.1 4.9E-11 1.1E-15 132.6 2.2 139 88-241 13-157 (836)
87 KOG0465|consensus 99.0 5.2E-11 1.1E-15 123.6 1.1 127 93-243 38-171 (721)
88 TIGR03680 eif2g_arch translati 99.0 5.6E-11 1.2E-15 122.2 0.7 128 92-243 2-149 (406)
89 PRK05433 GTP-binding protein L 99.0 1.2E-10 2.5E-15 125.2 2.8 126 92-242 5-140 (600)
90 PRK00007 elongation factor G; 99.0 1.2E-10 2.5E-15 127.4 2.1 128 94-244 10-143 (693)
91 PRK10218 GTP-binding protein; 99.0 2.8E-10 6.1E-15 122.0 4.8 124 94-242 5-134 (607)
92 PRK12739 elongation factor G; 99.0 1.4E-10 3E-15 126.8 2.2 128 94-244 8-141 (691)
93 PRK10512 selenocysteinyl-tRNA- 99.0 2.1E-10 4.5E-15 123.5 2.3 105 95-243 1-119 (614)
94 TIGR01393 lepA GTP-binding pro 98.9 7.9E-10 1.7E-14 118.7 3.0 126 93-242 2-136 (595)
95 KOG0469|consensus 98.9 3.5E-10 7.6E-15 115.1 0.2 199 85-305 10-236 (842)
96 TIGR00484 EF-G translation elo 98.9 7.5E-10 1.6E-14 121.1 2.4 128 94-244 10-143 (689)
97 TIGR00475 selB selenocysteine- 98.9 8.3E-10 1.8E-14 118.3 2.1 105 95-243 1-118 (581)
98 cd04168 TetM_like Tet(M)-like 98.8 9.1E-10 2E-14 105.3 1.5 126 96-244 1-132 (237)
99 TIGR00490 aEF-2 translation el 98.8 1.3E-09 2.7E-14 119.8 2.5 137 87-244 12-154 (720)
100 PRK00741 prfC peptide chain re 98.8 1.1E-09 2.3E-14 116.0 0.6 128 93-242 9-145 (526)
101 KOG0464|consensus 98.8 8.3E-10 1.8E-14 110.2 -0.5 77 94-187 37-114 (753)
102 cd01888 eIF2_gamma eIF2-gamma 98.8 2.5E-09 5.4E-14 99.6 2.6 124 95-242 1-151 (203)
103 cd04167 Snu114p Snu114p subfam 98.8 1.8E-09 3.8E-14 101.2 1.0 135 95-244 1-139 (213)
104 cd04169 RF3 RF3 subfamily. Pe 98.7 1.8E-09 4E-14 105.0 0.4 128 94-243 2-138 (267)
105 COG4108 PrfC Peptide chain rel 98.7 2.8E-09 6.1E-14 107.4 0.9 120 94-240 12-145 (528)
106 TIGR00503 prfC peptide chain r 98.7 3.4E-09 7.3E-14 112.3 1.2 128 92-241 9-145 (527)
107 KOG0467|consensus 98.6 9.4E-09 2E-13 109.2 1.2 128 94-247 9-143 (887)
108 PRK13351 elongation factor G; 98.6 2.1E-08 4.5E-13 109.8 1.8 127 94-243 8-140 (687)
109 COG0532 InfB Translation initi 98.6 7.9E-08 1.7E-12 99.6 5.7 107 97-241 8-120 (509)
110 cd01889 SelB_euk SelB subfamil 98.4 6.7E-08 1.5E-12 88.7 0.7 128 95-243 1-135 (192)
111 cd04165 GTPBP1_like GTPBP1-lik 98.4 9.4E-08 2E-12 90.6 1.7 130 97-242 2-152 (224)
112 KOG1145|consensus 98.4 2.6E-07 5.7E-12 95.6 4.1 112 97-247 156-270 (683)
113 cd01890 LepA LepA subfamily. 98.3 8.6E-08 1.9E-12 86.2 -0.4 125 95-242 1-133 (179)
114 cd04170 EF-G_bact Elongation f 98.3 8.7E-08 1.9E-12 93.0 -0.5 126 96-243 1-131 (268)
115 PRK12740 elongation factor G; 98.3 1.2E-07 2.6E-12 103.6 0.5 121 100-242 1-126 (668)
116 PRK05306 infB translation init 98.3 3.9E-07 8.3E-12 100.4 2.9 110 94-242 290-403 (787)
117 TIGR00487 IF-2 translation ini 98.2 9.8E-07 2.1E-11 94.7 4.4 110 95-242 88-201 (587)
118 COG5258 GTPBP1 GTPase [General 98.1 2.4E-06 5.3E-11 85.3 4.4 155 91-261 114-288 (527)
119 CHL00189 infB translation init 98.1 2.4E-06 5.2E-11 93.6 4.6 113 94-242 244-361 (742)
120 cd01891 TypA_BipA TypA (tyrosi 98.1 1.8E-06 3.9E-11 79.3 3.0 125 94-242 2-131 (194)
121 PRK04004 translation initiatio 97.8 1.3E-05 2.8E-10 86.2 3.7 20 96-115 8-27 (586)
122 TIGR00491 aIF-2 translation in 97.8 1.5E-05 3.2E-10 85.7 3.0 20 96-115 6-25 (590)
123 KOG0468|consensus 97.7 2.4E-05 5.2E-10 82.8 2.6 262 61-355 98-401 (971)
124 cd04171 SelB SelB subfamily. 97.6 4.4E-05 9.6E-10 66.9 2.6 22 95-116 1-22 (164)
125 cd00881 GTP_translation_factor 97.2 0.00021 4.6E-09 64.1 2.6 22 96-117 1-22 (189)
126 PRK00093 GTP-binding protein D 97.0 0.00069 1.5E-08 70.2 4.4 25 91-115 170-194 (435)
127 cd01887 IF2_eIF5B IF2/eIF5B (i 96.9 0.002 4.3E-08 56.7 6.0 20 96-115 2-21 (168)
128 PLN03127 Elongation factor Tu; 96.7 0.0017 3.7E-08 67.8 5.0 102 6-114 187-294 (447)
129 KOG1144|consensus 96.7 0.0032 6.9E-08 67.9 6.2 65 173-242 538-606 (1064)
130 TIGR03598 GTPase_YsxC ribosome 96.6 0.003 6.4E-08 57.2 4.9 24 92-115 16-39 (179)
131 cd01895 EngA2 EngA2 subfamily. 96.6 0.0035 7.6E-08 54.9 5.2 23 94-116 2-24 (174)
132 PRK12736 elongation factor Tu; 96.5 0.0024 5.1E-08 65.7 4.2 101 7-114 139-243 (394)
133 TIGR03594 GTPase_EngA ribosome 96.5 0.0031 6.8E-08 65.1 4.9 24 92-115 170-193 (429)
134 PLN03126 Elongation factor Tu; 96.4 0.0028 6.2E-08 66.7 4.0 101 7-114 208-322 (478)
135 cd01879 FeoB Ferrous iron tran 96.2 0.0088 1.9E-07 51.9 5.7 22 223-244 96-117 (158)
136 TIGR00485 EF-Tu translation el 96.2 0.0044 9.5E-08 63.7 3.9 97 6-109 138-238 (394)
137 cd01894 EngA1 EngA1 subfamily. 96.1 0.0026 5.7E-08 55.0 1.4 23 222-244 99-121 (157)
138 COG1159 Era GTPase [General fu 96.0 0.014 3E-07 57.3 6.1 115 94-245 6-131 (298)
139 PRK09554 feoB ferrous iron tra 96.0 0.02 4.3E-07 63.8 8.1 23 94-116 3-25 (772)
140 PRK12735 elongation factor Tu; 95.9 0.0087 1.9E-07 61.6 4.5 101 7-114 139-245 (396)
141 cd01897 NOG NOG1 is a nucleola 95.8 0.025 5.3E-07 49.8 6.5 21 96-116 2-22 (168)
142 PRK00049 elongation factor Tu; 95.7 0.01 2.2E-07 61.1 3.9 102 6-114 138-245 (396)
143 cd01884 EF_Tu EF-Tu subfamily. 95.6 0.016 3.4E-07 53.8 4.6 42 7-48 129-171 (195)
144 CHL00071 tufA elongation facto 95.4 0.015 3.2E-07 60.2 4.0 41 7-47 139-180 (409)
145 PRK09518 bifunctional cytidyla 95.0 0.044 9.5E-07 60.7 6.4 24 92-115 273-296 (712)
146 cd04124 RabL2 RabL2 subfamily. 94.7 0.029 6.2E-07 49.6 3.4 21 95-115 1-21 (161)
147 cd00880 Era_like Era (E. coli 94.7 0.09 2E-06 44.5 6.4 17 99-115 1-17 (163)
148 TIGR03594 GTPase_EngA ribosome 94.5 0.035 7.5E-07 57.3 4.0 19 97-115 2-20 (429)
149 cd01882 BMS1 Bms1. Bms1 is an 94.5 0.051 1.1E-06 51.4 4.8 25 91-115 36-60 (225)
150 cd04105 SR_beta Signal recogni 94.5 0.071 1.5E-06 49.5 5.6 20 96-115 2-21 (203)
151 KOG0463|consensus 93.9 0.038 8.1E-07 55.8 2.6 22 95-116 134-155 (641)
152 cd04160 Arfrp1 Arfrp1 subfamil 93.6 0.038 8.3E-07 48.5 1.9 21 96-116 1-21 (167)
153 PRK00093 GTP-binding protein D 93.6 0.076 1.7E-06 55.0 4.4 20 96-115 3-22 (435)
154 TIGR00231 small_GTP small GTP- 93.6 0.041 8.8E-07 46.7 1.9 21 95-115 2-22 (161)
155 smart00053 DYNc Dynamin, GTPas 93.5 0.57 1.2E-05 45.0 9.9 23 95-117 27-49 (240)
156 cd01898 Obg Obg subfamily. Th 93.4 0.04 8.7E-07 48.5 1.6 21 96-116 2-22 (170)
157 PRK14845 translation initiatio 93.3 0.066 1.4E-06 61.3 3.6 120 93-241 461-591 (1049)
158 PRK09518 bifunctional cytidyla 93.2 0.095 2.1E-06 58.1 4.6 22 94-115 450-471 (712)
159 PF13555 AAA_29: P-loop contai 93.1 0.061 1.3E-06 40.7 2.0 25 96-120 25-49 (62)
160 PRK04213 GTP-binding protein; 93.0 0.13 2.8E-06 47.0 4.4 23 94-116 9-31 (201)
161 PRK00454 engB GTP-binding prot 92.6 0.08 1.7E-06 47.9 2.5 24 92-115 22-45 (196)
162 cd04164 trmE TrmE (MnmE, ThdF, 92.5 0.075 1.6E-06 45.7 2.0 21 95-115 2-22 (157)
163 cd01878 HflX HflX subfamily. 92.4 0.075 1.6E-06 48.8 2.0 25 92-116 39-63 (204)
164 PRK03003 GTP-binding protein D 92.3 0.15 3.2E-06 53.7 4.3 23 93-115 210-232 (472)
165 cd04114 Rab30 Rab30 subfamily. 92.1 0.12 2.5E-06 45.6 2.8 25 91-115 4-28 (169)
166 COG1134 TagH ABC-type polysacc 92.1 0.081 1.7E-06 50.7 1.8 22 97-118 56-77 (249)
167 KOG1143|consensus 92.0 0.11 2.3E-06 52.7 2.5 67 177-259 251-331 (591)
168 cd04155 Arl3 Arl3 subfamily. 91.8 0.11 2.4E-06 46.0 2.3 25 92-116 12-36 (173)
169 COG2229 Predicted GTPase [Gene 91.8 0.33 7.1E-06 44.5 5.3 23 94-116 10-32 (187)
170 cd00877 Ran Ran (Ras-related n 91.7 0.37 8.1E-06 42.7 5.7 21 95-115 1-21 (166)
171 TIGR00073 hypB hydrogenase acc 91.6 0.09 2E-06 48.9 1.5 24 92-115 20-43 (207)
172 COG1084 Predicted GTPase [Gene 91.4 0.21 4.5E-06 49.8 3.9 128 94-261 168-309 (346)
173 cd01858 NGP_1 NGP-1. Autoanti 91.4 0.26 5.6E-06 43.5 4.3 23 93-115 101-123 (157)
174 cd04178 Nucleostemin_like Nucl 90.8 0.28 6E-06 44.6 3.9 25 92-116 115-139 (172)
175 PF03205 MobB: Molybdopterin g 90.6 0.15 3.2E-06 44.8 1.9 21 97-117 3-23 (140)
176 PRK13948 shikimate kinase; Pro 90.4 0.17 3.8E-06 46.4 2.2 29 91-119 7-35 (182)
177 COG0563 Adk Adenylate kinase a 90.3 0.17 3.7E-06 46.3 2.1 23 95-117 1-23 (178)
178 COG1122 CbiO ABC-type cobalt t 90.1 0.15 3.3E-06 48.8 1.6 23 97-119 33-55 (235)
179 cd01862 Rab7 Rab7 subfamily. 90.1 0.17 3.6E-06 44.5 1.8 21 95-115 1-21 (172)
180 PF01926 MMR_HSR1: 50S ribosom 90.0 0.19 4E-06 41.8 1.9 20 97-116 2-21 (116)
181 PRK00625 shikimate kinase; Pro 90.0 0.18 3.9E-06 45.9 1.9 24 95-118 1-24 (173)
182 PRK15467 ethanolamine utilizat 90.0 0.17 3.7E-06 45.0 1.7 20 96-115 3-22 (158)
183 PRK05057 aroK shikimate kinase 89.9 0.19 4.2E-06 45.5 2.1 24 95-118 5-28 (172)
184 TIGR00235 udk uridine kinase. 89.7 0.23 5.1E-06 46.1 2.5 26 92-117 4-29 (207)
185 cd01876 YihA_EngB The YihA (En 89.6 0.19 4.1E-06 43.4 1.7 19 97-115 2-20 (170)
186 PF00485 PRK: Phosphoribulokin 89.5 0.2 4.3E-06 46.0 1.9 24 97-120 2-25 (194)
187 PRK05480 uridine/cytidine kina 89.4 0.24 5.3E-06 45.9 2.4 25 94-118 6-30 (209)
188 cd04163 Era Era subfamily. Er 89.3 0.23 5.1E-06 42.6 2.1 23 94-116 3-25 (168)
189 COG0378 HypB Ni2+-binding GTPa 89.2 0.31 6.6E-06 45.3 2.8 29 91-119 10-38 (202)
190 cd02019 NK Nucleoside/nucleoti 89.2 0.24 5.1E-06 37.8 1.8 21 97-117 2-22 (69)
191 TIGR02528 EutP ethanolamine ut 89.0 0.22 4.9E-06 42.5 1.7 20 96-115 2-21 (142)
192 PF13207 AAA_17: AAA domain; P 88.7 0.25 5.4E-06 41.2 1.8 20 97-116 2-21 (121)
193 COG1160 Predicted GTPases [Gen 88.7 0.67 1.5E-05 48.1 5.2 23 93-115 177-199 (444)
194 cd02025 PanK Pantothenate kina 88.6 0.23 5E-06 46.9 1.7 22 97-118 2-23 (220)
195 cd01849 YlqF_related_GTPase Yl 88.6 0.48 1E-05 41.7 3.6 23 94-116 100-122 (155)
196 PRK06696 uridine kinase; Valid 88.6 0.31 6.8E-06 45.8 2.5 27 92-118 20-46 (223)
197 PRK13949 shikimate kinase; Pro 88.5 0.28 6.2E-06 44.3 2.1 24 96-119 3-26 (169)
198 cd02023 UMPK Uridine monophosp 88.3 0.27 5.8E-06 45.1 1.8 22 97-118 2-23 (198)
199 TIGR00554 panK_bact pantothena 88.1 0.34 7.3E-06 47.9 2.5 28 92-119 60-87 (290)
200 COG5256 TEF1 Translation elong 88.0 0.86 1.9E-05 46.8 5.4 106 2-114 151-264 (428)
201 cd04119 RJL RJL (RabJ-Like) su 88.0 0.3 6.5E-06 42.4 1.9 21 95-115 1-21 (168)
202 PRK08118 topology modulation p 87.9 0.32 7E-06 43.8 2.1 22 96-117 3-24 (167)
203 cd01855 YqeH YqeH. YqeH is an 87.9 0.53 1.1E-05 42.9 3.6 21 95-115 128-148 (190)
204 COG1101 PhnK ABC-type uncharac 87.9 0.27 5.9E-06 46.5 1.6 23 97-119 35-57 (263)
205 PRK13947 shikimate kinase; Pro 87.8 0.33 7.1E-06 43.2 2.0 23 96-118 3-25 (171)
206 PRK08099 bifunctional DNA-bind 87.7 0.41 8.8E-06 49.4 2.9 23 94-116 219-241 (399)
207 cd00464 SK Shikimate kinase (S 87.7 0.32 6.9E-06 42.3 1.9 23 96-118 1-23 (154)
208 cd04159 Arl10_like Arl10-like 87.6 0.31 6.7E-06 41.6 1.7 20 97-116 2-21 (159)
209 PLN03071 GTP-binding nuclear p 87.6 0.43 9.4E-06 44.8 2.8 23 92-114 11-33 (219)
210 cd00157 Rho Rho (Ras homology) 87.6 0.34 7.4E-06 42.4 2.0 22 95-116 1-22 (171)
211 cd01864 Rab19 Rab19 subfamily. 87.5 0.36 7.7E-06 42.4 2.1 22 94-115 3-24 (165)
212 PF00350 Dynamin_N: Dynamin fa 87.5 0.35 7.5E-06 42.7 2.0 20 97-116 1-20 (168)
213 cd04104 p47_IIGP_like p47 (47- 87.4 0.34 7.4E-06 44.6 2.0 22 95-116 2-23 (197)
214 cd04145 M_R_Ras_like M-Ras/R-R 87.4 0.38 8.2E-06 41.8 2.1 23 93-115 1-23 (164)
215 smart00175 RAB Rab subfamily o 87.3 0.34 7.5E-06 42.0 1.8 21 95-115 1-21 (164)
216 cd00154 Rab Rab family. Rab G 87.3 0.33 7.3E-06 41.3 1.7 22 95-116 1-22 (159)
217 PF10662 PduV-EutP: Ethanolami 87.3 0.32 7E-06 43.0 1.6 18 97-114 4-21 (143)
218 cd04137 RheB Rheb (Ras Homolog 87.2 0.37 8E-06 43.0 2.0 22 95-116 2-23 (180)
219 cd03279 ABC_sbcCD SbcCD and ot 87.2 0.3 6.4E-06 45.6 1.4 23 97-119 31-53 (213)
220 PF00005 ABC_tran: ABC transpo 87.1 0.36 7.9E-06 41.1 1.8 23 96-118 13-35 (137)
221 cd01852 AIG1 AIG1 (avrRpt2-ind 86.8 0.37 7.9E-06 44.2 1.8 21 95-115 1-21 (196)
222 cd03259 ABC_Carb_Solutes_like 86.8 0.35 7.7E-06 44.8 1.7 22 97-118 29-50 (213)
223 PF08477 Miro: Miro-like prote 86.8 0.39 8.5E-06 39.7 1.8 20 97-116 2-21 (119)
224 COG4167 SapF ABC-type antimicr 86.8 0.38 8.1E-06 44.5 1.8 25 96-120 41-65 (267)
225 cd04154 Arl2 Arl2 subfamily. 86.7 0.43 9.4E-06 42.4 2.2 22 94-115 14-35 (173)
226 PRK06217 hypothetical protein; 86.7 0.42 9.1E-06 43.4 2.1 23 95-117 2-24 (183)
227 PRK03839 putative kinase; Prov 86.6 0.4 8.7E-06 43.2 1.9 22 96-117 2-23 (180)
228 TIGR01189 ccmA heme ABC export 86.5 0.38 8.2E-06 44.2 1.7 23 96-118 28-50 (198)
229 KOG1532|consensus 86.5 0.79 1.7E-05 44.9 3.9 147 94-247 19-200 (366)
230 PLN00043 elongation factor 1-a 86.3 0.89 1.9E-05 47.7 4.5 92 11-109 164-261 (447)
231 cd00876 Ras Ras family. The R 86.2 0.4 8.7E-06 41.2 1.7 21 96-116 1-21 (160)
232 cd01130 VirB11-like_ATPase Typ 86.2 0.44 9.5E-06 43.5 2.0 23 94-116 25-47 (186)
233 cd03264 ABC_drug_resistance_li 86.2 0.4 8.6E-06 44.4 1.7 23 96-118 27-49 (211)
234 cd03273 ABC_SMC2_euk Eukaryoti 86.2 0.51 1.1E-05 45.1 2.5 26 93-119 25-50 (251)
235 cd01866 Rab2 Rab2 subfamily. 86.1 0.47 1E-05 41.9 2.1 22 94-115 4-25 (168)
236 COG1120 FepC ABC-type cobalami 86.1 0.4 8.7E-06 46.5 1.7 23 97-119 31-53 (258)
237 cd03219 ABC_Mj1267_LivG_branch 86.1 0.39 8.4E-06 45.3 1.6 22 97-118 29-50 (236)
238 cd01892 Miro2 Miro2 subfamily. 86.0 0.53 1.1E-05 42.0 2.3 25 91-115 1-25 (169)
239 COG1135 AbcC ABC-type metal io 85.9 0.42 9.1E-06 47.4 1.8 18 97-114 35-52 (339)
240 cd00878 Arf_Arl Arf (ADP-ribos 85.9 0.44 9.4E-06 41.4 1.7 20 96-115 1-20 (158)
241 PRK08233 hypothetical protein; 85.9 0.54 1.2E-05 42.0 2.4 24 95-118 4-27 (182)
242 cd01861 Rab6 Rab6 subfamily. 85.7 0.48 1E-05 41.1 1.9 20 96-115 2-21 (161)
243 TIGR01166 cbiO cobalt transpor 85.7 0.44 9.5E-06 43.4 1.7 23 96-118 20-42 (190)
244 PRK13646 cbiO cobalt transport 85.7 0.43 9.3E-06 46.7 1.7 24 96-119 35-58 (286)
245 COG1363 FrvX Cellulase M and r 85.5 1.8 3.9E-05 44.0 6.0 93 280-409 260-352 (355)
246 cd03222 ABC_RNaseL_inhibitor T 85.4 0.43 9.3E-06 43.6 1.5 23 96-118 27-49 (177)
247 KOG1423|consensus 85.4 0.96 2.1E-05 44.9 3.9 66 30-115 27-93 (379)
248 cd03261 ABC_Org_Solvent_Resist 85.4 0.46 9.9E-06 44.8 1.7 22 97-118 29-50 (235)
249 cd03229 ABC_Class3 This class 85.4 0.47 1E-05 42.8 1.7 23 96-118 28-50 (178)
250 PRK15177 Vi polysaccharide exp 85.3 0.48 1E-05 44.3 1.8 23 96-118 15-37 (213)
251 TIGR02673 FtsE cell division A 85.3 0.47 1E-05 44.0 1.7 23 96-118 30-52 (214)
252 cd01893 Miro1 Miro1 subfamily. 85.3 0.52 1.1E-05 41.6 1.9 20 96-115 2-21 (166)
253 cd00882 Ras_like_GTPase Ras-li 85.2 0.35 7.7E-06 40.1 0.8 18 99-116 1-18 (157)
254 PF13671 AAA_33: AAA domain; P 85.2 0.51 1.1E-05 40.4 1.8 20 97-116 2-21 (143)
255 PF13238 AAA_18: AAA domain; P 85.2 0.51 1.1E-05 39.3 1.8 21 97-117 1-21 (129)
256 cd03255 ABC_MJ0796_Lo1CDE_FtsE 85.2 0.48 1E-05 44.0 1.7 23 96-118 32-54 (218)
257 KOG1489|consensus 84.9 0.64 1.4E-05 46.3 2.5 26 91-116 193-218 (366)
258 cd03297 ABC_ModC_molybdenum_tr 84.8 0.51 1.1E-05 43.9 1.7 23 96-118 25-47 (214)
259 PRK05541 adenylylsulfate kinas 84.8 0.68 1.5E-05 41.6 2.5 26 92-117 5-30 (176)
260 cd03292 ABC_FtsE_transporter F 84.8 0.55 1.2E-05 43.5 1.9 23 96-118 29-51 (214)
261 cd03225 ABC_cobalt_CbiO_domain 84.7 0.52 1.1E-05 43.6 1.7 23 96-118 29-51 (211)
262 cd00879 Sar1 Sar1 subfamily. 84.5 0.63 1.4E-05 41.9 2.2 24 92-115 17-40 (190)
263 cd03116 MobB Molybdenum is an 84.5 0.54 1.2E-05 42.2 1.6 22 96-117 3-24 (159)
264 cd04113 Rab4 Rab4 subfamily. 84.4 0.57 1.2E-05 40.8 1.8 21 95-115 1-21 (161)
265 KOG0090|consensus 84.4 1.1 2.4E-05 42.2 3.7 20 95-114 39-58 (238)
266 cd03265 ABC_DrrA DrrA is the A 84.4 0.55 1.2E-05 43.8 1.7 23 96-118 28-50 (220)
267 PRK07667 uridine kinase; Provi 84.3 0.67 1.4E-05 42.6 2.3 24 94-117 17-40 (193)
268 cd04115 Rab33B_Rab33A Rab33B/R 84.3 0.63 1.4E-05 41.2 2.1 22 94-115 2-23 (170)
269 cd03226 ABC_cobalt_CbiO_domain 84.3 0.55 1.2E-05 43.3 1.7 24 96-119 28-51 (205)
270 PLN02348 phosphoribulokinase 84.3 0.69 1.5E-05 47.5 2.5 28 92-119 47-74 (395)
271 PRK07261 topology modulation p 84.3 0.64 1.4E-05 42.0 2.1 21 96-116 2-22 (171)
272 COG0703 AroK Shikimate kinase 84.2 0.72 1.6E-05 42.0 2.3 29 94-122 2-30 (172)
273 PRK13643 cbiO cobalt transport 84.2 0.53 1.2E-05 46.1 1.6 22 97-118 35-56 (288)
274 TIGR00972 3a0107s01c2 phosphat 84.2 0.56 1.2E-05 44.6 1.7 22 97-118 30-51 (247)
275 cd03258 ABC_MetN_methionine_tr 84.1 0.6 1.3E-05 43.9 1.9 24 96-119 33-56 (233)
276 PRK05439 pantothenate kinase; 84.1 0.73 1.6E-05 46.0 2.6 28 90-117 82-109 (311)
277 TIGR03410 urea_trans_UrtE urea 84.1 0.59 1.3E-05 43.9 1.8 23 96-118 28-50 (230)
278 TIGR02770 nickel_nikD nickel i 84.1 0.56 1.2E-05 44.2 1.7 23 96-118 14-36 (230)
279 cd03218 ABC_YhbG The ABC trans 84.1 0.57 1.2E-05 44.0 1.7 23 96-118 28-50 (232)
280 PRK14274 phosphate ABC transpo 84.1 0.58 1.3E-05 44.9 1.8 22 97-118 41-62 (259)
281 PF05049 IIGP: Interferon-indu 84.0 0.74 1.6E-05 47.1 2.6 112 91-240 32-153 (376)
282 cd03262 ABC_HisP_GlnQ_permease 83.9 0.63 1.4E-05 43.0 1.9 23 96-118 28-50 (213)
283 PRK13642 cbiO cobalt transport 83.9 0.57 1.2E-05 45.6 1.7 22 97-118 36-57 (277)
284 cd03240 ABC_Rad50 The catalyti 83.9 0.63 1.4E-05 43.3 1.9 23 96-118 24-46 (204)
285 PLN02796 D-glycerate 3-kinase 83.9 0.77 1.7E-05 46.4 2.6 28 92-119 98-125 (347)
286 PRK00131 aroK shikimate kinase 83.8 0.71 1.5E-05 40.7 2.2 25 94-118 4-28 (175)
287 cd03223 ABCD_peroxisomal_ALDP 83.8 0.61 1.3E-05 41.8 1.7 22 97-118 30-51 (166)
288 KOG1424|consensus 83.7 2.7 5.9E-05 44.4 6.5 101 15-116 216-336 (562)
289 cd01853 Toc34_like Toc34-like 83.7 0.67 1.5E-05 44.7 2.1 26 91-116 28-53 (249)
290 cd03272 ABC_SMC3_euk Eukaryoti 83.7 0.77 1.7E-05 43.4 2.4 26 93-119 23-48 (243)
291 PRK11614 livF leucine/isoleuci 83.6 0.58 1.3E-05 44.2 1.6 22 97-118 34-55 (237)
292 cd03215 ABC_Carb_Monos_II This 83.6 0.61 1.3E-05 42.3 1.7 23 96-118 28-50 (182)
293 cd03295 ABC_OpuCA_Osmoprotecti 83.6 0.62 1.3E-05 44.2 1.7 22 97-118 30-51 (242)
294 cd04123 Rab21 Rab21 subfamily. 83.5 0.66 1.4E-05 40.0 1.8 21 95-115 1-21 (162)
295 cd03369 ABCC_NFT1 Domain 2 of 83.5 0.63 1.4E-05 43.0 1.7 22 97-118 37-58 (207)
296 PRK13833 conjugal transfer pro 83.5 0.62 1.4E-05 46.7 1.8 23 94-116 144-166 (323)
297 TIGR01188 drrA daunorubicin re 83.5 0.61 1.3E-05 46.0 1.7 23 97-119 22-44 (302)
298 PRK13539 cytochrome c biogenes 83.4 0.68 1.5E-05 42.9 1.9 23 96-118 30-52 (207)
299 COG1428 Deoxynucleoside kinase 83.4 0.68 1.5E-05 43.5 1.9 24 95-118 5-28 (216)
300 TIGR00960 3a0501s02 Type II (G 83.4 0.64 1.4E-05 43.2 1.7 22 97-118 32-53 (216)
301 TIGR01184 ntrCD nitrate transp 83.3 0.64 1.4E-05 43.8 1.7 23 96-118 13-35 (230)
302 cd03224 ABC_TM1139_LivF_branch 83.3 0.63 1.4E-05 43.3 1.7 23 96-118 28-50 (222)
303 TIGR02211 LolD_lipo_ex lipopro 83.3 0.65 1.4E-05 43.2 1.7 23 96-118 33-55 (221)
304 TIGR03864 PQQ_ABC_ATP ABC tran 83.3 0.65 1.4E-05 43.9 1.7 23 96-118 29-51 (236)
305 cd03301 ABC_MalK_N The N-termi 83.2 0.66 1.4E-05 42.9 1.7 22 97-118 29-50 (213)
306 PRK14532 adenylate kinase; Pro 83.1 0.78 1.7E-05 41.6 2.1 23 95-117 1-23 (188)
307 cd04151 Arl1 Arl1 subfamily. 83.1 0.67 1.5E-05 40.4 1.7 19 96-114 1-19 (158)
308 cd01860 Rab5_related Rab5-rela 83.0 0.76 1.6E-05 39.9 2.0 21 95-115 2-22 (163)
309 PRK11124 artP arginine transpo 83.0 0.71 1.5E-05 43.7 1.9 23 96-118 30-52 (242)
310 PRK13537 nodulation ABC transp 82.9 0.66 1.4E-05 46.0 1.7 24 96-119 35-58 (306)
311 PRK13640 cbiO cobalt transport 82.9 0.66 1.4E-05 45.3 1.7 22 97-118 36-57 (282)
312 cd03256 ABC_PhnC_transporter A 82.9 0.68 1.5E-05 43.7 1.7 22 97-118 30-51 (241)
313 PRK00089 era GTPase Era; Revie 82.8 0.7 1.5E-05 45.1 1.8 23 94-116 5-27 (292)
314 PRK13652 cbiO cobalt transport 82.8 0.68 1.5E-05 45.1 1.7 23 96-118 32-54 (277)
315 PRK13538 cytochrome c biogenes 82.8 0.69 1.5E-05 42.7 1.7 24 96-119 29-52 (204)
316 PF09439 SRPRB: Signal recogni 82.8 0.87 1.9E-05 41.9 2.3 21 95-115 4-24 (181)
317 PRK14251 phosphate ABC transpo 82.7 0.7 1.5E-05 44.0 1.8 22 97-118 33-54 (251)
318 COG1763 MobB Molybdopterin-gua 82.7 0.82 1.8E-05 41.2 2.1 21 96-116 4-24 (161)
319 cd04157 Arl6 Arl6 subfamily. 82.7 0.7 1.5E-05 40.0 1.6 20 96-115 1-20 (162)
320 COG1160 Predicted GTPases [Gen 82.7 1.6 3.4E-05 45.5 4.3 21 96-116 5-25 (444)
321 COG1131 CcmA ABC-type multidru 82.7 0.69 1.5E-05 45.6 1.7 23 97-119 34-56 (293)
322 cd03231 ABC_CcmA_heme_exporter 82.7 0.72 1.6E-05 42.5 1.7 23 96-118 28-50 (201)
323 PRK13536 nodulation factor exp 82.7 0.69 1.5E-05 46.7 1.8 24 96-119 69-92 (340)
324 COG4559 ABC-type hemin transpo 82.6 0.71 1.5E-05 43.7 1.7 23 97-119 30-52 (259)
325 cd03235 ABC_Metallic_Cations A 82.6 0.68 1.5E-05 42.9 1.6 22 97-118 28-49 (213)
326 PRK10895 lipopolysaccharide AB 82.6 0.7 1.5E-05 43.7 1.7 23 96-118 31-53 (241)
327 PRK14268 phosphate ABC transpo 82.6 0.7 1.5E-05 44.3 1.7 22 97-118 41-62 (258)
328 cd04135 Tc10 TC10 subfamily. 82.6 0.8 1.7E-05 40.4 2.0 21 95-115 1-21 (174)
329 PRK10908 cell division protein 82.4 0.73 1.6E-05 43.0 1.7 23 96-118 30-52 (222)
330 PRK13648 cbiO cobalt transport 82.4 0.72 1.6E-05 44.6 1.7 23 96-118 37-59 (269)
331 cd03251 ABCC_MsbA MsbA is an e 82.4 0.73 1.6E-05 43.3 1.7 24 96-119 30-53 (234)
332 PRK13946 shikimate kinase; Pro 82.4 0.86 1.9E-05 41.5 2.1 25 94-118 10-34 (184)
333 cd03278 ABC_SMC_barmotin Barmo 82.4 0.78 1.7E-05 42.5 1.9 22 97-118 25-46 (197)
334 TIGR03596 GTPase_YlqF ribosome 82.4 1.5 3.2E-05 42.8 3.9 23 93-115 117-139 (276)
335 cd01863 Rab18 Rab18 subfamily. 82.4 0.8 1.7E-05 39.7 1.9 21 95-115 1-21 (161)
336 PRK14273 phosphate ABC transpo 82.3 0.73 1.6E-05 44.0 1.7 22 97-118 36-57 (254)
337 PRK13543 cytochrome c biogenes 82.3 0.75 1.6E-05 42.8 1.7 22 97-118 40-61 (214)
338 PRK13651 cobalt transporter AT 82.2 0.72 1.6E-05 45.7 1.7 24 96-119 35-58 (305)
339 PTZ00141 elongation factor 1- 82.2 1.8 3.8E-05 45.4 4.6 91 10-107 163-259 (446)
340 PLN03046 D-glycerate 3-kinase; 82.2 0.96 2.1E-05 47.0 2.6 28 91-118 209-236 (460)
341 PRK11264 putative amino-acid A 82.2 0.75 1.6E-05 43.7 1.8 22 97-118 32-53 (250)
342 TIGR01288 nodI ATP-binding ABC 82.2 0.74 1.6E-05 45.4 1.7 23 96-118 32-54 (303)
343 cd04138 H_N_K_Ras_like H-Ras/N 82.0 0.89 1.9E-05 39.1 2.0 21 95-115 2-22 (162)
344 cd04149 Arf6 Arf6 subfamily. 82.0 0.91 2E-05 40.4 2.1 22 93-114 8-29 (168)
345 PRK09493 glnQ glutamine ABC tr 82.0 0.77 1.7E-05 43.4 1.7 23 96-118 29-51 (240)
346 PRK13540 cytochrome c biogenes 82.0 0.79 1.7E-05 42.2 1.7 23 96-118 29-51 (200)
347 smart00173 RAS Ras subfamily o 81.9 0.78 1.7E-05 40.0 1.6 21 96-116 2-22 (164)
348 PF03308 ArgK: ArgK protein; 81.9 0.94 2E-05 44.0 2.3 30 86-115 21-50 (266)
349 cd03293 ABC_NrtD_SsuB_transpor 81.9 0.79 1.7E-05 42.8 1.7 22 97-118 33-54 (220)
350 PRK09270 nucleoside triphospha 81.9 0.94 2E-05 42.8 2.3 29 92-120 31-59 (229)
351 PRK13644 cbiO cobalt transport 81.9 0.77 1.7E-05 44.6 1.7 24 96-119 30-53 (274)
352 cd03234 ABCG_White The White s 81.9 0.85 1.8E-05 42.8 2.0 24 96-119 35-58 (226)
353 PLN03108 Rab family protein; P 81.9 0.95 2.1E-05 42.0 2.3 22 94-115 6-27 (210)
354 PRK07429 phosphoribulokinase; 81.9 1.1 2.3E-05 45.2 2.7 28 92-119 6-33 (327)
355 smart00382 AAA ATPases associa 81.8 0.99 2.1E-05 37.1 2.1 25 95-119 3-27 (148)
356 cd03260 ABC_PstB_phosphate_tra 81.8 0.82 1.8E-05 42.8 1.8 22 97-118 29-50 (227)
357 COG1072 CoaA Panthothenate kin 81.7 2 4.3E-05 42.1 4.4 37 80-116 65-104 (283)
358 PRK13637 cbiO cobalt transport 81.7 0.77 1.7E-05 45.0 1.7 23 97-119 36-58 (287)
359 PRK15056 manganese/iron transp 81.7 0.78 1.7E-05 44.5 1.7 23 96-118 35-57 (272)
360 PRK13631 cbiO cobalt transport 81.7 0.79 1.7E-05 45.8 1.7 23 97-119 55-77 (320)
361 PRK14262 phosphate ABC transpo 81.7 0.85 1.8E-05 43.4 1.9 23 96-118 31-53 (250)
362 cd03237 ABC_RNaseL_inhibitor_d 81.7 0.8 1.7E-05 43.9 1.7 22 97-118 28-49 (246)
363 PRK14241 phosphate transporter 81.6 0.81 1.7E-05 43.9 1.7 23 96-118 32-54 (258)
364 PRK10078 ribose 1,5-bisphospho 81.6 0.89 1.9E-05 41.4 2.0 21 96-116 4-24 (186)
365 PRK15494 era GTPase Era; Provi 81.6 0.97 2.1E-05 45.5 2.4 23 93-115 51-73 (339)
366 TIGR00176 mobB molybdopterin-g 81.6 0.85 1.8E-05 40.7 1.8 20 97-116 2-21 (155)
367 smart00178 SAR Sar1p-like memb 81.6 0.97 2.1E-05 40.9 2.2 22 94-115 17-38 (184)
368 cd03298 ABC_ThiQ_thiamine_tran 81.5 0.82 1.8E-05 42.3 1.7 23 96-118 26-48 (211)
369 TIGR01277 thiQ thiamine ABC tr 81.5 0.88 1.9E-05 42.2 1.9 23 96-118 26-48 (213)
370 PRK14269 phosphate ABC transpo 81.5 0.82 1.8E-05 43.5 1.7 23 96-118 30-52 (246)
371 PLN03118 Rab family protein; P 81.5 0.99 2.1E-05 41.7 2.2 23 93-115 13-35 (211)
372 cd03213 ABCG_EPDR ABCG transpo 81.5 0.9 1.9E-05 41.7 1.9 23 96-118 37-59 (194)
373 cd03266 ABC_NatA_sodium_export 81.4 0.88 1.9E-05 42.2 1.9 23 96-118 33-55 (218)
374 cd03269 ABC_putative_ATPase Th 81.4 0.84 1.8E-05 42.2 1.7 22 97-118 29-50 (210)
375 cd03248 ABCC_TAP TAP, the Tran 81.4 0.85 1.8E-05 42.7 1.7 24 96-119 42-65 (226)
376 PRK13851 type IV secretion sys 81.4 0.81 1.8E-05 46.3 1.7 24 93-116 161-184 (344)
377 PRK11629 lolD lipoprotein tran 81.4 0.84 1.8E-05 43.0 1.7 22 97-118 38-59 (233)
378 cd03252 ABCC_Hemolysin The ABC 81.4 0.84 1.8E-05 43.0 1.7 23 96-118 30-52 (237)
379 cd03254 ABCC_Glucan_exporter_l 81.3 0.84 1.8E-05 42.7 1.7 23 97-119 32-54 (229)
380 PRK14256 phosphate ABC transpo 81.3 0.85 1.8E-05 43.5 1.8 22 97-118 33-54 (252)
381 cd03246 ABCC_Protease_Secretio 81.3 0.95 2.1E-05 40.7 2.0 22 96-117 30-51 (173)
382 cd04122 Rab14 Rab14 subfamily. 81.2 0.95 2.1E-05 39.8 1.9 22 94-115 2-23 (166)
383 PRK09544 znuC high-affinity zi 81.1 0.86 1.9E-05 43.8 1.7 23 96-118 32-54 (251)
384 COG1121 ZnuC ABC-type Mn/Zn tr 81.1 0.9 1.9E-05 44.0 1.8 23 97-119 33-55 (254)
385 PRK13900 type IV secretion sys 81.1 0.84 1.8E-05 45.9 1.7 23 93-115 159-181 (332)
386 PF00437 T2SE: Type II/IV secr 81.0 0.87 1.9E-05 43.9 1.7 23 93-115 126-148 (270)
387 TIGR03411 urea_trans_UrtD urea 81.0 0.87 1.9E-05 43.1 1.7 23 96-118 30-52 (242)
388 cd03232 ABC_PDR_domain2 The pl 80.8 0.93 2E-05 41.5 1.8 22 96-117 35-56 (192)
389 PRK14237 phosphate transporter 80.8 0.97 2.1E-05 43.7 2.0 23 96-118 48-70 (267)
390 cd04153 Arl5_Arl8 Arl5/Arl8 su 80.8 1.1 2.3E-05 40.1 2.1 22 94-115 15-36 (174)
391 PRK09563 rbgA GTPase YlqF; Rev 80.8 1.9 4.1E-05 42.3 4.1 24 92-115 119-142 (287)
392 PRK03695 vitamin B12-transport 80.8 0.85 1.9E-05 43.6 1.6 23 96-118 24-46 (248)
393 cd02026 PRK Phosphoribulokinas 80.7 0.93 2E-05 44.3 1.8 23 97-119 2-24 (273)
394 TIGR00150 HI0065_YjeE ATPase, 80.7 1.2 2.5E-05 38.9 2.3 27 92-118 20-46 (133)
395 cd04106 Rab23_lke Rab23-like s 80.7 0.99 2.1E-05 39.1 1.9 21 95-115 1-21 (162)
396 TIGR03608 L_ocin_972_ABC putat 80.7 0.93 2E-05 41.6 1.7 23 97-119 27-49 (206)
397 PRK13634 cbiO cobalt transport 80.7 0.88 1.9E-05 44.6 1.7 24 96-119 35-58 (290)
398 PRK13541 cytochrome c biogenes 80.7 0.94 2E-05 41.5 1.7 23 96-118 28-50 (195)
399 PRK14253 phosphate ABC transpo 80.6 0.99 2.2E-05 42.9 2.0 23 96-118 31-53 (249)
400 cd00267 ABC_ATPase ABC (ATP-bi 80.6 0.95 2.1E-05 39.8 1.7 23 96-118 27-49 (157)
401 cd03257 ABC_NikE_OppD_transpor 80.6 0.91 2E-05 42.4 1.7 23 96-118 33-55 (228)
402 cd03294 ABC_Pro_Gly_Bertaine T 80.6 0.91 2E-05 44.0 1.7 22 97-118 53-74 (269)
403 PRK14248 phosphate ABC transpo 80.6 0.94 2E-05 43.7 1.8 21 97-117 50-70 (268)
404 PRK10584 putative ABC transpor 80.6 0.94 2E-05 42.4 1.8 23 96-118 38-60 (228)
405 PRK11247 ssuB aliphatic sulfon 80.5 0.92 2E-05 43.8 1.7 23 96-118 40-62 (257)
406 cd03228 ABCC_MRP_Like The MRP 80.5 0.97 2.1E-05 40.5 1.8 23 96-118 30-52 (171)
407 PRK13650 cbiO cobalt transport 80.5 0.92 2E-05 44.2 1.7 22 97-118 36-57 (279)
408 PRK14255 phosphate ABC transpo 80.4 0.94 2E-05 43.2 1.7 21 97-117 34-54 (252)
409 PRK14493 putative bifunctional 80.4 0.92 2E-05 44.4 1.7 23 96-118 3-25 (274)
410 TIGR01313 therm_gnt_kin carboh 80.4 0.87 1.9E-05 40.2 1.4 20 97-116 1-20 (163)
411 PRK14246 phosphate ABC transpo 80.4 0.93 2E-05 43.6 1.7 23 96-118 38-60 (257)
412 cd04116 Rab9 Rab9 subfamily. 80.3 1.2 2.6E-05 39.2 2.3 22 94-115 5-26 (170)
413 PRK14250 phosphate ABC transpo 80.3 0.95 2.1E-05 43.0 1.7 23 96-118 31-53 (241)
414 PRK14242 phosphate transporter 80.3 0.98 2.1E-05 43.1 1.8 21 97-117 35-55 (253)
415 PF00009 GTP_EFTU: Elongation 80.3 2.1 4.6E-05 38.8 3.9 40 7-46 133-173 (188)
416 PRK12317 elongation factor 1-a 80.3 2.4 5.3E-05 43.9 4.9 100 7-113 150-257 (425)
417 cd03263 ABC_subfamily_A The AB 80.3 1 2.2E-05 41.9 1.9 23 96-118 30-52 (220)
418 PRK13645 cbiO cobalt transport 80.3 0.94 2E-05 44.3 1.7 22 97-118 40-61 (289)
419 PRK13638 cbiO cobalt transport 80.1 0.93 2E-05 43.9 1.6 22 97-118 30-51 (271)
420 cd01856 YlqF YlqF. Proteins o 80.1 2.3 5E-05 38.1 4.1 22 94-115 115-136 (171)
421 cd03249 ABC_MTABC3_MDL1_MDL2 M 80.1 1 2.2E-05 42.5 1.8 23 96-118 31-53 (238)
422 cd03233 ABC_PDR_domain1 The pl 80.1 0.99 2.1E-05 41.7 1.7 22 96-117 35-56 (202)
423 cd03230 ABC_DR_subfamily_A Thi 80.1 1.1 2.3E-05 40.3 1.9 22 96-117 28-49 (173)
424 PRK13649 cbiO cobalt transport 80.1 0.95 2.1E-05 44.0 1.7 22 97-118 36-57 (280)
425 cd03221 ABCF_EF-3 ABCF_EF-3 E 80.0 0.99 2.1E-05 39.5 1.6 22 96-117 28-49 (144)
426 TIGR00436 era GTP-binding prot 80.0 0.95 2.1E-05 43.9 1.6 20 97-116 3-22 (270)
427 PRK14260 phosphate ABC transpo 80.0 1 2.2E-05 43.3 1.8 23 96-118 35-57 (259)
428 TIGR02982 heterocyst_DevA ABC 80.0 1 2.2E-05 42.1 1.7 23 96-118 33-55 (220)
429 TIGR02836 spore_IV_A stage IV 79.9 1.5 3.3E-05 45.5 3.1 34 85-118 8-41 (492)
430 PRK14252 phosphate ABC transpo 79.8 1 2.2E-05 43.4 1.7 22 97-118 45-66 (265)
431 PF04665 Pox_A32: Poxvirus A32 79.8 1.1 2.4E-05 43.1 1.9 22 94-115 13-34 (241)
432 PRK14270 phosphate ABC transpo 79.7 1 2.3E-05 42.9 1.8 21 97-117 33-53 (251)
433 PRK06547 hypothetical protein; 79.7 1.3 2.9E-05 40.2 2.4 26 92-117 13-38 (172)
434 TIGR01360 aden_kin_iso1 adenyl 79.7 1.1 2.3E-05 40.3 1.8 21 96-116 5-25 (188)
435 cd03268 ABC_BcrA_bacitracin_re 79.7 1 2.3E-05 41.5 1.7 23 96-118 28-50 (208)
436 TIGR02315 ABC_phnC phosphonate 79.7 1 2.2E-05 42.5 1.7 22 97-118 31-52 (243)
437 PRK14267 phosphate ABC transpo 79.6 1 2.2E-05 42.9 1.7 22 97-118 33-54 (253)
438 PRK14235 phosphate transporter 79.6 1.1 2.3E-05 43.4 1.8 22 97-118 48-69 (267)
439 cd03288 ABCC_SUR2 The SUR doma 79.6 1 2.3E-05 43.2 1.8 23 96-118 49-71 (257)
440 PRK12297 obgE GTPase CgtA; Rev 79.6 1.6 3.5E-05 45.5 3.2 23 94-116 158-180 (424)
441 PRK11248 tauB taurine transpor 79.6 1 2.2E-05 43.3 1.7 22 97-118 30-51 (255)
442 PRK10575 iron-hydroxamate tran 79.5 0.99 2.2E-05 43.5 1.6 23 96-118 39-61 (265)
443 PRK14263 phosphate ABC transpo 79.5 1.1 2.4E-05 43.2 1.9 23 96-118 36-58 (261)
444 PRK09984 phosphonate/organopho 79.5 1 2.2E-05 43.2 1.7 22 97-118 33-54 (262)
445 cd04136 Rap_like Rap-like subf 79.5 1.2 2.6E-05 38.5 2.0 21 95-115 2-22 (163)
446 TIGR02769 nickel_nikE nickel i 79.5 1.1 2.4E-05 43.2 1.9 23 96-118 39-61 (265)
447 PRK09435 membrane ATPase/prote 79.4 1.2 2.7E-05 44.8 2.2 29 91-119 53-81 (332)
448 TIGR03522 GldA_ABC_ATP gliding 79.4 1 2.3E-05 44.4 1.7 23 97-119 31-53 (301)
449 PRK10751 molybdopterin-guanine 79.4 1.3 2.9E-05 40.3 2.3 22 96-117 8-29 (173)
450 PRK13632 cbiO cobalt transport 79.4 1 2.3E-05 43.6 1.7 22 97-118 38-59 (271)
451 TIGR03771 anch_rpt_ABC anchore 79.4 1.1 2.3E-05 42.1 1.7 23 96-118 8-30 (223)
452 TIGR00437 feoB ferrous iron tr 79.4 3.3 7.2E-05 45.0 5.7 20 223-242 94-113 (591)
453 PRK13647 cbiO cobalt transport 79.4 1 2.2E-05 43.7 1.7 23 96-118 33-55 (274)
454 cd01870 RhoA_like RhoA-like su 79.3 1.2 2.6E-05 39.3 2.0 22 95-116 2-23 (175)
455 PRK10744 pstB phosphate transp 79.3 1.1 2.3E-05 43.2 1.7 23 96-118 41-63 (260)
456 cd03216 ABC_Carb_Monos_I This 79.3 1.2 2.6E-05 39.7 1.9 22 96-117 28-49 (163)
457 PRK11153 metN DL-methionine tr 79.3 1 2.2E-05 45.4 1.7 23 97-119 34-56 (343)
458 cd01865 Rab3 Rab3 subfamily. 79.2 1.2 2.7E-05 39.0 2.0 21 95-115 2-22 (165)
459 cd03290 ABCC_SUR1_N The SUR do 79.1 1.1 2.4E-05 41.7 1.7 23 96-118 29-51 (218)
460 cd02021 GntK Gluconate kinase 79.1 1.1 2.4E-05 38.9 1.7 20 97-116 2-21 (150)
461 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 79.1 1.1 2.4E-05 42.1 1.7 21 97-117 51-71 (224)
462 PRK13546 teichoic acids export 79.1 1.1 2.3E-05 43.5 1.7 23 96-118 52-74 (264)
463 PRK13635 cbiO cobalt transport 79.1 1.1 2.3E-05 43.8 1.7 22 97-118 36-57 (279)
464 PRK14240 phosphate transporter 79.1 1.1 2.4E-05 42.6 1.7 21 97-117 32-52 (250)
465 PRK13633 cobalt transporter AT 79.0 1.1 2.3E-05 43.7 1.7 23 97-119 39-61 (280)
466 PRK14238 phosphate transporter 79.0 1.1 2.4E-05 43.4 1.8 23 96-118 52-74 (271)
467 PRK11701 phnK phosphonate C-P 79.0 1.1 2.4E-05 42.9 1.7 22 97-118 35-56 (258)
468 cd03214 ABC_Iron-Siderophores_ 79.0 1.1 2.5E-05 40.4 1.7 22 97-118 28-49 (180)
469 PRK10771 thiQ thiamine transpo 78.9 1.1 2.4E-05 42.1 1.7 23 96-118 27-49 (232)
470 COG1116 TauB ABC-type nitrate/ 78.9 1.1 2.4E-05 43.1 1.7 21 97-117 32-52 (248)
471 cd01672 TMPK Thymidine monopho 78.9 1.2 2.6E-05 40.1 1.8 21 97-117 3-23 (200)
472 KOG0979|consensus 78.9 1.6 3.6E-05 49.1 3.1 45 92-140 41-85 (1072)
473 PF00025 Arf: ADP-ribosylation 78.9 1.6 3.5E-05 39.3 2.6 24 91-114 11-34 (175)
474 PRK14258 phosphate ABC transpo 78.8 1.2 2.6E-05 42.9 1.9 22 96-117 35-56 (261)
475 cd03245 ABCC_bacteriocin_expor 78.8 1.1 2.5E-05 41.5 1.7 23 96-118 32-54 (220)
476 PRK14247 phosphate ABC transpo 78.8 1.1 2.5E-05 42.5 1.7 22 97-118 32-53 (250)
477 PRK10619 histidine/lysine/argi 78.8 1.1 2.5E-05 42.8 1.7 23 96-118 33-55 (257)
478 KOG3347|consensus 78.7 1.4 3E-05 39.5 2.0 25 92-116 5-29 (176)
479 TIGR03873 F420-0_ABC_ATP propo 78.7 1.1 2.4E-05 42.9 1.6 23 96-118 29-51 (256)
480 TIGR02788 VirB11 P-type DNA tr 78.7 1.2 2.6E-05 44.2 1.9 24 93-116 143-166 (308)
481 TIGR01978 sufC FeS assembly AT 78.7 1.2 2.5E-05 42.1 1.8 22 96-117 28-49 (243)
482 TIGR00483 EF-1_alpha translati 78.6 3.3 7.2E-05 42.9 5.3 101 7-114 152-260 (426)
483 PRK15453 phosphoribulokinase; 78.5 1.4 3E-05 43.5 2.2 28 92-119 3-30 (290)
484 PRK06762 hypothetical protein; 78.5 1.2 2.5E-05 39.5 1.6 22 96-117 4-25 (166)
485 TIGR02782 TrbB_P P-type conjug 78.5 1.2 2.7E-05 44.0 1.9 22 94-115 132-153 (299)
486 TIGR03740 galliderm_ABC gallid 78.5 1.2 2.6E-05 41.6 1.7 23 96-118 28-50 (223)
487 cd03267 ABC_NatA_like Similar 78.4 1.2 2.6E-05 42.2 1.7 23 96-118 49-71 (236)
488 cd03247 ABCC_cytochrome_bd The 78.4 1.3 2.8E-05 39.9 1.9 23 96-118 30-52 (178)
489 TIGR00968 3a0106s01 sulfate AB 78.4 1.3 2.8E-05 42.0 1.9 23 96-118 28-50 (237)
490 PRK14261 phosphate ABC transpo 78.4 1.2 2.7E-05 42.4 1.9 22 96-117 34-55 (253)
491 PRK10247 putative ABC transpor 78.4 1.2 2.6E-05 41.8 1.8 23 96-118 35-57 (225)
492 cd02028 UMPK_like Uridine mono 78.4 1.2 2.7E-05 40.5 1.7 22 97-118 2-23 (179)
493 PRK14243 phosphate transporter 78.4 1.2 2.6E-05 42.9 1.8 22 96-117 38-59 (264)
494 cd03296 ABC_CysA_sulfate_impor 78.3 1.2 2.6E-05 42.1 1.7 22 97-118 31-52 (239)
495 PRK13636 cbiO cobalt transport 78.2 1.2 2.6E-05 43.5 1.7 23 96-118 34-56 (283)
496 PRK14275 phosphate ABC transpo 78.2 1.2 2.6E-05 43.6 1.7 22 96-117 67-88 (286)
497 PRK04182 cytidylate kinase; Pr 78.2 1.4 3E-05 39.2 2.0 23 96-118 2-24 (180)
498 cd03300 ABC_PotA_N PotA is an 78.1 1.3 2.9E-05 41.7 1.9 23 96-118 28-50 (232)
499 KOG3728|consensus 78.0 4 8.7E-05 38.9 5.0 165 221-403 121-305 (308)
500 PLN03110 Rab GTPase; Provision 78.0 1.5 3.3E-05 40.9 2.2 23 93-115 11-33 (216)
No 1
>KOG3984|consensus
Probab=100.00 E-value=1.7e-66 Score=475.25 Aligned_cols=281 Identities=54% Similarity=0.979 Sum_probs=270.0
Q ss_pred chhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEec
Q psy9643 124 GSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ 203 (412)
Q Consensus 124 ~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~q 203 (412)
+.+.|+++.+.++||......+|++||||||||+++++.++++..+||+++|+||.+++|||++++++|.++|++++++|
T Consensus 3 ~p~~ye~~~~~a~~i~~~~~~rpk~gIICGSgLg~l~~~l~~p~i~pYedIP~Fp~s~vpghag~lvfG~l~G~pvv~mq 82 (286)
T KOG3984|consen 3 DPYPYEDVEEMAEYIVEQSHIRPKVGIICGSGLGGLADKLSQPVIVPYEDIPNFPVSTVPGHAGRLVFGTLGGAPVVAMQ 82 (286)
T ss_pred CCchHHHHHHHHHHHHhccccCCceEEEecCCcchhhhhccCCEEecHhhCCCCCcccCCCCcccEEEEecCCceEEEEc
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCC
Q psy9643 204 GRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPM 283 (412)
Q Consensus 204 gr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~ 283 (412)
||+|.||||+..++++|+++++.+||+.+++||++|++|+.++.||+|++.||||+.++.|+||+.|+|+.+||.+|+.+
T Consensus 83 grfh~yegy~L~~~tfpvrVm~l~Gv~~lvvTnaAggin~~f~vgdiMli~DHin~~G~agq~pl~Gpnd~rfG~rf~a~ 162 (286)
T KOG3984|consen 83 GRFHSYEGYPLAKCTFPVRVMQLLGVRILVVTNAAGGINPKFAVGDIMLIKDHINLPGLAGQNPLRGPNDPRFGVRFPAL 162 (286)
T ss_pred ccccccCCccHHHhhhhHHHHHHcCceEEEEeccccCcCcccccccEEEEecccCCccccCCCCCCCCCcccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeee
Q psy9643 284 NKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLIT 363 (412)
Q Consensus 284 ~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VS 363 (412)
+++||.+||+++.++++++|+...+|+|+|+|+.||+|||+||.|++|.+|+|+||||++||+++||++|++++++++||
T Consensus 163 sdAYd~~lr~~a~~~~K~m~iqr~lheGvy~~vgGP~~eT~AE~rmlr~mg~dAVGMStvpEVivArHcG~kVlafslIT 242 (286)
T KOG3984|consen 163 SDAYDKDLRQKALEIGKAMGIQRTLHEGVYACVGGPIFETRAESRMLRTMGADAVGMSTVPEVIVARHCGLKVLAFSLIT 242 (286)
T ss_pred hhhhhHHHHHHHHHHHHHhcccchhhcceEEEecCCccccHHHHHHHHHhCcccccccccchheeeccCCcEEEEEEEEe
Confidence 99999999999999999999987899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9643 364 NKCVTDYDDH--AEANHEEVIQAGKLRGPMIKSMVTRIVSYIG 404 (412)
Q Consensus 364 d~a~~~~~~~--~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~ 404 (412)
|.+..++... .+.+|+|+++..+++++++.+++..++..|+
T Consensus 243 n~~~~d~s~sa~~ev~h~evl~v~~~a~~~~~~lVs~lm~~i~ 285 (286)
T KOG3984|consen 243 NKAVVDESASADVEVDHDEVLEVGKQAAQACSDLVSRLMYEIH 285 (286)
T ss_pred ccccccCchhccccCCHHHHHhhhHHHHHHHHHHHHHHHhhcc
Confidence 9997543333 5789999999999999999999999998775
No 2
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=100.00 E-value=1.3e-59 Score=444.15 Aligned_cols=237 Identities=38% Similarity=0.660 Sum_probs=224.7
Q ss_pred ceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHH
Q psy9643 147 KIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL 226 (412)
Q Consensus 147 ~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~ 226 (412)
++|||+||||+++++.+++...++|+++|+||.++++||+++++.|++.|++|++++||+|.||||++..+.+|+|+++.
T Consensus 1 ~i~iI~GSGl~~~~~~~~~~~~ipY~~ip~fp~~tv~gH~g~l~~G~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~ 80 (237)
T TIGR01698 1 DMAIVLGSGWGGAVEALGEPVELPYAEIPGFPAPTVSGHAGELIRVRIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARA 80 (237)
T ss_pred CEEEEEeCCHHHHHHhhcCceEeecccCCCCCCCcccCccceEEEEEECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCc
Q psy9643 227 VGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSS 306 (412)
Q Consensus 227 lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~ 306 (412)
+||++||.+|++|++|++++|||+|+++||||+++ .+|+. |++|++++++||++|| +++++.++.
T Consensus 81 lGv~~ii~tna~Gsl~~~~~pGdlv~~~D~I~~t~---~~pl~-------g~~~~d~~~~yd~~Lr----~~a~~~~~~- 145 (237)
T TIGR01698 81 TGAETLILTNAAGGLRQDWGPGTPVLISDHINLTA---RSPLI-------GPRFVDLTDAYSPRLR----ELAERVDPP- 145 (237)
T ss_pred cCCCEEEEEcccccCCCCCCCCCEEeechhcccCC---CCCCC-------CCccCCCCcccCHHHH----HHHHHcCCC-
Confidence 99999999999999999999999999999999987 67874 4689999999999999 556778887
Q ss_pred ceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHH
Q psy9643 307 IVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGK 386 (412)
Q Consensus 307 ~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~ 386 (412)
+++|||+++.||+|||+||+||+|++|||+||||++||+++||++||||++|++|||+|+| ..++++||+|+++.++
T Consensus 146 -~~~GvY~~~~GP~fET~AEir~~r~~GaD~VGMS~vpEvilAre~g~~~a~is~VtN~a~g--~~~~~~th~ev~~~~~ 222 (237)
T TIGR01698 146 -LAEGVYAWFPGPHYETPAEIRMAGILGADLVGMSTVPETIAARFCGLEVLGVSLVTNLAAG--ITGTPLSHAEVKAAGA 222 (237)
T ss_pred -ccCEEEEEecCCCcCCHHHHHHHHHcCCCEeccCchHHHHHHHHCCCcEEEEEEEeccccC--CCCCCCCHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999987 4567899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy9643 387 LRGPMIKSMVTRIVS 401 (412)
Q Consensus 387 ~~~~~~~~ll~~~i~ 401 (412)
+++.++.+++.++|+
T Consensus 223 ~~~~~~~~ll~~~i~ 237 (237)
T TIGR01698 223 AAGTRLAALLADIIK 237 (237)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998864
No 3
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=100.00 E-value=1.1e-58 Score=441.99 Aligned_cols=248 Identities=41% Similarity=0.727 Sum_probs=238.9
Q ss_pred ceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHH
Q psy9643 147 KIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL 226 (412)
Q Consensus 147 ~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~ 226 (412)
++|||+||||+++++.++++..++|+++|+||.++++||+++++.|+++|++|++++||.|.|||+++..+.+|+|+++.
T Consensus 1 ~~~ii~Gsgl~~~~~~~~~~~~i~y~~ip~~p~~~v~gh~g~l~~G~l~g~~Vv~~~Gr~h~y~g~~~~~~~~~i~~l~~ 80 (248)
T TIGR01699 1 RVAFILGSGLGALADQIENAVAISYEKLPGFPVSTVHGHAGELVLGHLQGVPVVCMKGRGHFYEGRGMTIMTDAIRTFKL 80 (248)
T ss_pred CEEEEeeCcHHHHHHhccCCEEEECCCCCCCCCCcccCCcceEEEEEECCEEEEEEeCCCcccCCcchhhhcchHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCc
Q psy9643 227 VGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSS 306 (412)
Q Consensus 227 lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~ 306 (412)
+||+.||++|++|++|+++++||+|+++||||+++ .+|+.+.+.+.+|++|.+|+++||++||+.+.+++++++++
T Consensus 81 lGv~~iI~t~aaG~l~~~l~~Gdlvi~~d~i~~t~---~~p~~~~~~~~~g~~~~~~~~~yd~~Lr~~~~~~a~~~~~~- 156 (248)
T TIGR01699 81 LGCELLFCTNAAGSLRPEVGAGSLVALKDHINTMP---GTPMVGLNDDRFGERFFSLANAYDAEYRALLQKVAKEEGFP- 156 (248)
T ss_pred cCCCEEEEecceeccCCCCCCCCEECHHHHhhcCC---CCCccCCCcccCCCCCCCCCCccCHHHHHHHHHHHHHcCCc-
Confidence 99999999999999999999999999999999987 78998888888899999999999999999999999999998
Q ss_pred ceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHH
Q psy9643 307 IVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGK 386 (412)
Q Consensus 307 ~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~ 386 (412)
+++|+|+++.||+|||+||++++++||||+||||++||+++|+++||||++||+|||++++ ....+++|+||++.++
T Consensus 157 -~~~Gvy~~~~GP~FeT~AE~r~~~~~Gad~VgMs~vpEa~~A~~~g~~~~~i~~Vtn~a~g--~~~~~lt~~ev~~~~~ 233 (248)
T TIGR01699 157 -LTEGVFVSYPGPNFETAAEIRMMQIIGGDVVGMSVVPEVISARHCDLKVVAVSAITNMAEG--LSDVKLSHAQTLAAAE 233 (248)
T ss_pred -eeeEEEEEeeCCCcCCHHHHHHHHHcCCcEEccchhHHHHHHHHCCCcEEEEEEEeecCcC--cCCCCCCHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999986 4678899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy9643 387 LRGPMIKSMVTRIVS 401 (412)
Q Consensus 387 ~~~~~~~~ll~~~i~ 401 (412)
++.+++.++|.++|+
T Consensus 234 ~~~~~~~~ll~~~~~ 248 (248)
T TIGR01699 234 LSKQNFINLICGFLR 248 (248)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998874
No 4
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=100.00 E-value=3.8e-58 Score=445.86 Aligned_cols=269 Identities=49% Similarity=0.883 Sum_probs=255.2
Q ss_pred HHHHHHHHHHHhhhcC-CCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEeccee
Q psy9643 128 YELIQSIAKFLLDSIS-IRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRF 206 (412)
Q Consensus 128 ~~~~~~~~~~i~~~~~-~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~ 206 (412)
+++++++++||+++++ .++++|||+||||+++++.+++..+++|+++|+|+.++++||+++++.|+++|++|++++||.
T Consensus 3 ~~~~~~~~~~i~~~~~~~~~~i~iI~GsGl~~~~~~~~~~~~~~y~~ip~f~~~~v~gh~~~~~~G~l~g~~Vv~~~g~~ 82 (272)
T PRK08202 3 LEKIEEAAAFIREKTGAFKPEIGLILGSGLGALADEIENAVVIPYADIPGFPVSTVEGHAGELVLGRLGGKPVLAMQGRF 82 (272)
T ss_pred hHHHHHHHHHHHHhcCCCCCCEEEEeCCchhHHHHHhcCcEEEecccCCCCCCCCCcCCCceEEEEEECCEEEEEEccCC
Confidence 5778899999999998 899999999999999988889999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy9643 207 HYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA 286 (412)
Q Consensus 207 H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~ 286 (412)
|.|||+.++.+++++|+++.+|++.||++|++|++++++++||+|+++|++++++ .+|+.|.+...++++|++++++
T Consensus 83 H~yeG~~~~~~~a~i~~l~~lGv~~II~tgaaGsL~~~l~~GDiVi~~d~i~~~~---~~~~~g~~~~~~~~~~~~~~~~ 159 (272)
T PRK08202 83 HYYEGYSMEAVTFPVRVMKALGVETLIVTNAAGGLNPDFGPGDLMLISDHINLTG---RNPLIGPNDDEFGPRFPDMSDA 159 (272)
T ss_pred cccCCCCHHHHHHHHHHHHHcCCCEEEEecccccCCCCCCCCCEEEEchhhhhCC---CCcccCCCcccCCCccCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999987 6787777666678889999999
Q ss_pred ccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643 287 YNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC 366 (412)
Q Consensus 287 ~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a 366 (412)
||++||+.+.+++++.|++ ++.|+|++++||+|+|+||++++++||||+||||++||+++|+++|+||++|++|||++
T Consensus 160 ~d~~L~~~l~~~a~~~~~~--~~~G~y~~~~Gp~feT~aE~~~~~~~Gad~VgMe~~~ea~lA~~~gi~~~~i~~Vsd~a 237 (272)
T PRK08202 160 YDPELRALAKKVAKELGIP--LQEGVYVGVSGPSYETPAEIRMLRTLGADAVGMSTVPEVIVARHCGLKVLGISCITNLA 237 (272)
T ss_pred cCHHHHHHHHHHHHHcCCc--eeeEEEEEeeCCCcCCHHHHHHHHHcCCcEEecChHHHHHHHHHCCCcEEEEEEEeccC
Confidence 9999999999999999998 88999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 367 ~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
++ .++++++|+++++.+++++.++.+++.++|+++
T Consensus 238 ~~--~~~~~~~~~ev~~~~~~~~~~~~~l~~~~i~~~ 272 (272)
T PRK08202 238 AG--ISDEPLSHEEVLEVAERAAPKFGRLVKAILARL 272 (272)
T ss_pred cC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 75 456789999999999999999999999998764
No 5
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.8e-56 Score=419.22 Aligned_cols=258 Identities=38% Similarity=0.615 Sum_probs=231.1
Q ss_pred HHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCe-EEEEecceeeeecC
Q psy9643 133 SIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGI-PIMCMQGRFHYYEG 211 (412)
Q Consensus 133 ~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~-~vv~~qgr~H~yeg 211 (412)
++..++..++...+++|||+||||+++++..+ ...+|.++|.|+.+++|||.+++. .++++ .++..|||.|.|||
T Consensus 4 ~~~~~~~~~~~~~~~igiIgGSGl~~l~~~~~--~~~~~~~~tpfg~~s~~~~~g~~~--~~g~~v~~l~rhGr~H~y~p 79 (262)
T COG0005 4 EAADFIKERTDEMPMIGIIGGSGLYDLADLLE--VREPYSDITPFGVPSVPGHAGELV--TLGGKVAFLARHGRGHSYPP 79 (262)
T ss_pred chhhhhhcccCCCccEEEEecccccccccccc--cceecccCCCCCCCCCceEEEEEe--ecCceEEEEecCCCCCCCCC
Confidence 45667777777789999999999999976655 567889999999999999998777 66677 77888999999877
Q ss_pred CCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHH
Q psy9643 212 YPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQL 291 (412)
Q Consensus 212 ~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~L 291 (412)
|....... +|+++.+||++||++|++||||++++|||+|+++||||++. +.+||.|.+. +++|+++++|||++|
T Consensus 80 h~~~~ran-i~alk~lGV~~vi~tnAvGsl~~~~~pGd~vv~~d~Id~t~--r~~~~~~~~~---~~~~~d~s~~y~~~l 153 (262)
T COG0005 80 HSVNYRAN-IRALKALGVERVILTNAVGSLREEYKPGDLVVPDDHIDFTK--RQNPFYGGND---GVRFVDMSDPYDPEL 153 (262)
T ss_pred CCchHHHH-HHHHHHcCCeEEEEecccccccccCCCCCEEeehhheeccC--CCCcccCCCC---ceeeCCCCCcCCHHH
Confidence 66665555 99999999999999999999999999999999999999996 4788877654 678999999999999
Q ss_pred HHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q psy9643 292 RAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYD 371 (412)
Q Consensus 292 r~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~ 371 (412)
|+.+.+++++..+....++|||+|++||+|||+||++|+|.+|||+||||++||+++|||+|+||++|++|||+++| .
T Consensus 154 r~~l~~~a~~~~~~~~~~~GvYv~~eGP~feT~AEirm~r~~GaDvVGMS~vPEv~lARe~~l~ya~is~vTn~aag--~ 231 (262)
T COG0005 154 REALAEAAKELRLGHPLQEGVYVCVEGPRFETPAEIRMFRSLGADVVGMSTVPEVILARELGLCVAALSLVTNYAAG--I 231 (262)
T ss_pred HHHHHHHHhhcccCcccCceEEEEecCCCcCCHHHHHHHHHhCCCcccCcCCcHHHHhHhhCCcEEEEEEeehhhcc--C
Confidence 99999999965554226689999999999999999999999999999999999999999999999999999999998 3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 372 DHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 372 ~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
++++||+||++.++++..++.+++.++|+++
T Consensus 232 -~~~lt~eEV~~~~~~~~~~~~~l~~~~i~~~ 262 (262)
T COG0005 232 -GQPLTHEEVLEVAKENAEKIAKLLAAAIAKL 262 (262)
T ss_pred -CCCcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999864
No 6
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=100.00 E-value=2.3e-52 Score=400.71 Aligned_cols=247 Identities=53% Similarity=0.926 Sum_probs=232.2
Q ss_pred ceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHH
Q psy9643 147 KIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL 226 (412)
Q Consensus 147 ~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~ 226 (412)
++|||+||||+++++.+++..+++|+++|+||..+++||+++++.|+++|++|+++++|.|.|||+.++.++|++|+++.
T Consensus 1 ~~~iv~gsgl~~~~~~~~~~~~~~~~~ip~~~~~~~~g~~~~~~~G~i~g~~Vv~~~~~iH~~~Gk~~a~i~~~~~ll~~ 80 (249)
T TIGR01700 1 DIAIILGSGLGPLAEKVEDATIIDYSEIPHFPQSTVVGHAGNLVFGILGGKPVVAMQGRFHMYEGYDMAKVTFPVRVMKL 80 (249)
T ss_pred CEEEEecCcHHHHHHhccCcEEEEhhhcCCCCCCCCCCCCccEEEEEECCEEEEEEcCCccccCCcCHHHccHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCc
Q psy9643 227 VGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSS 306 (412)
Q Consensus 227 lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~ 306 (412)
+||++||++|++|++++++++||+|+++|+++++. .+|+.|.+.+.++..|+++..+||++|++.+.+++++++++
T Consensus 81 ~gv~~II~~gsaGsl~~~l~~GDiVi~~d~i~~~~---~~~l~g~~~~~~~~~~~~~~~~~d~~L~~~~~~~a~~~~~~- 156 (249)
T TIGR01700 81 LGVETLVVTNAAGGINPEFKVGDLMLIRDHINLPG---FNPLRGPNEERFGVRFPDMSDAYDRDLRQKAHSIAKQLNIP- 156 (249)
T ss_pred cCCCEEEEecccccCCCCCCCCCEEEEhhHhhCCC---CCCccCCCCcCCCCeeCCCCcccCHHHHHHHHHHHHHcCCc-
Confidence 99999999999999999999999999999999986 57887766666777788889999999999999999999998
Q ss_pred ceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCC-HHHHHHHH
Q psy9643 307 IVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEAN-HEEVIQAG 385 (412)
Q Consensus 307 ~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s-~~ev~~~~ 385 (412)
++.|+|++++||+|+|++|.+++++||||+||||++||+++|+++|+||++|++|||+++| ..+++++ ++++.+.+
T Consensus 157 -~~~G~y~~~sGp~F~t~aE~~~~~~~gad~V~Me~aaea~~A~~~gv~~~~i~~vsd~a~~--~~~~~~~~~~~v~~~~ 233 (249)
T TIGR01700 157 -LQEGVYVMLGGPSYETPAEVRLLRTLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKAAG--ILDYELSVHEEVMEAA 233 (249)
T ss_pred -cceEEEEEeeCCCcCCHHHHHHHHHcCCCEEecchHHHHHHHHHcCCcEEEEEEEeecccc--cCcCCCCHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999976 3457889 88899999
Q ss_pred HHHHHHHHHHHHHHH
Q psy9643 386 KLRGPMIKSMVTRIV 400 (412)
Q Consensus 386 ~~~~~~~~~ll~~~i 400 (412)
+++++.+.++|.++|
T Consensus 234 ~~~~~~~~~ll~~~i 248 (249)
T TIGR01700 234 KQAAEKLEKFVSLLI 248 (249)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999988888888775
No 7
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=100.00 E-value=2.4e-52 Score=404.80 Aligned_cols=239 Identities=24% Similarity=0.413 Sum_probs=215.5
Q ss_pred CCceeEeeCcCccc---ccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEe--cceeeeecCCCCccccH
Q psy9643 145 RPKIGIICGSGLST---IADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCM--QGRFHYYEGYPLWKCAM 219 (412)
Q Consensus 145 e~~~GIi~GsGl~~---~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~--qgr~H~yeg~~~~~v~~ 219 (412)
.+++|||+||||++ +++..++..++||.+ | +++++.|.++|++|+++ |||.|.| +|+++||
T Consensus 3 ~p~igIIgGSGl~~~~~l~~~~~~~~~tpyg~-p----------sg~l~~G~l~G~~V~~l~RhGr~H~y---~p~~i~~ 68 (289)
T PRK08931 3 KAVLGIIGGSGVYDIDGLEDARWERVESPWGE-P----------SDALLFGRLGGVPMVFLPRHGRGHRL---SPSDINY 68 (289)
T ss_pred CceEEEEecCCcCCccccccceeeeeEcCCCC-C----------cCcEEEEEECCEEEEEEeCCCCCCcc---ChHHccc
Confidence 57899999999995 566667777888875 1 56899999999999999 5999996 9999999
Q ss_pred --HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCC---CCCCCCcccccHHHHHH
Q psy9643 220 --PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFG---PRFPPMNKAYNKQLRAA 294 (412)
Q Consensus 220 --~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g---~~~~~~~~~~d~~Lr~~ 294 (412)
|+|+++.+||++||.+|++|++|++++|||+|+++||||+++.+..+ .|| .+|++|+++||++||+.
T Consensus 69 rAni~alk~lGv~~ii~tnA~Gsln~~~~pGd~vi~~D~In~t~~~~~~--------~~g~~~~~f~~m~~~y~~~Lr~~ 140 (289)
T PRK08931 69 RANIDALKRAGVTDIVSLSACGSFREELPPGTFVIVDQFIDRTFAREKS--------FFGTGCVAHVSMAHPVCPRLGDR 140 (289)
T ss_pred HHHHHHHHHcCCCEEEEecccccCCCCCCCCCEEeehhhhccCCCCCCC--------ccCCCcccCCCCCcccCHHHHHH
Confidence 99999999999999999999999999999999999999998743222 234 36999999999999999
Q ss_pred HHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCC
Q psy9643 295 TLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHA 374 (412)
Q Consensus 295 ~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~ 374 (412)
+.++++++|++ +++.|||+++.||+|||+||+||+++||||+||||++||+++|+|+||+|++|++|||+++|. ...+
T Consensus 141 l~~~a~~~~~~-~~~~GvYv~~~GPrfET~AEir~~r~~GaDvVGMStvPEvilAre~Gl~~a~is~VTN~a~g~-~~~~ 218 (289)
T PRK08931 141 LAAAARAEGIT-VHRGGTYLCMEGPQFSTLAESKLYRSWGCDVIGMTNMPEAKLAREAEICYATVAMVTDYDCWH-PDHD 218 (289)
T ss_pred HHHHHHHcCCe-EecceEEEEeeCCCCCCHHHHHHHHHcCCCEeccCccHHHHHHHHcCCceEEEEEEecccccc-cCCC
Confidence 99999999998 566889999999999999999999999999999999999999999999999999999999874 2456
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy9643 375 EANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQ 407 (412)
Q Consensus 375 ~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~~ 407 (412)
+++|+||++.++++..++.+++.++|++++...
T Consensus 219 ~~t~eeV~~~~~~~~~~~~~ll~~~i~~l~~~~ 251 (289)
T PRK08931 219 AVTVDAVIAVLLANADKARALVARLAPDLGAER 251 (289)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 899999999999999999999999999995544
No 8
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=100.00 E-value=6.7e-52 Score=397.68 Aligned_cols=238 Identities=20% Similarity=0.278 Sum_probs=213.5
Q ss_pred CCCceeEeeCcCcccccc--cccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEe--cceeeeecCCCCccccH
Q psy9643 144 IRPKIGIICGSGLSTIAD--SITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCM--QGRFHYYEGYPLWKCAM 219 (412)
Q Consensus 144 ~e~~~GIi~GsGl~~~~~--~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~--qgr~H~yeg~~~~~v~~ 219 (412)
..+++|||+||||+++.+ ..+++.++||.+. +++++.|++.|++|+++ |||.|.||||.+. +.+
T Consensus 4 ~~p~igII~GSGl~~l~~~~~~~~~~~tpyg~~-----------sg~l~~G~l~g~~v~~l~RhGr~H~ye~~~i~-~ra 71 (264)
T PRK07823 4 NGAMLGVIGGSGFYSFFGSDAREVNVDTPYGPP-----------SAPITIGEVGGRRVAFLPRHGRDHEFSPHTVP-YRA 71 (264)
T ss_pred CCceEEEEeccccchhhcccceeeEEeccCCCC-----------CCCEEEEEECCEEEEEEeCCCCCCCcCCCCcc-chH
Confidence 368999999999999876 4466777888761 25799999999999999 9999999988766 666
Q ss_pred HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHH
Q psy9643 220 PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIA 299 (412)
Q Consensus 220 ~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a 299 (412)
|+|+++.+||++||++|++|++|++++|||+|+++|+||+++ .+|+.+. .+|.+|++|+++||+.||+.+.+++
T Consensus 72 ni~alk~lGv~~ii~tnA~Gsln~~~~pGdlvi~dd~id~t~---~~p~t~~---~~g~~f~~m~~~y~~~Lr~~l~~~a 145 (264)
T PRK07823 72 NMWALRALGVRRVFAPCAVGSLRPELGPGTVVVPDQLVDRTS---GRAQTYF---DSGGVHVSFADPYCPTLRAAALGLP 145 (264)
T ss_pred HHHHHHHcCCCEEEEecccccCCCCCCCCCEEEcchhhhccC---CCCCCcc---CCCccCCCCCcccCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999987 4554332 2478999999999999999999999
Q ss_pred HHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHH
Q psy9643 300 RDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHE 379 (412)
Q Consensus 300 ~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ 379 (412)
+ . +++|||+++.||+|||+||+||+|++|||+||||++||+++|+++||+|++|++|||+++|. .+.++++|+
T Consensus 146 ~----~--~~~GvY~~~~GP~fET~AEir~~r~~GaDvVGMS~vPEvilAre~gl~~~~is~VTN~a~g~-~~~~~~~~e 218 (264)
T PRK07823 146 G----V--VDGGTMVVVQGPRFSTRAESRWFAAQGWSLVNMTGYPEAVLARELELCYAAIALVTDLDAGV-EAGEGVKAV 218 (264)
T ss_pred h----h--cCCeEEEEeeCCCCCCHHHHHHHHHcCCCEeccCccHHHHHHHHCCCceEEEEEEeccccCc-ccCCCCCHH
Confidence 7 3 88999999999999999999999999999999999999999999999999999999999874 245789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643 380 EVIQAGKLRGPMIKSMVTRIVSYIGEH 406 (412)
Q Consensus 380 ev~~~~~~~~~~~~~ll~~~i~~l~~~ 406 (412)
||++.++++++++.+++.++|++++..
T Consensus 219 ev~~~~~~~~~~~~~ll~~~i~~~~~~ 245 (264)
T PRK07823 219 DVFAEFGRNIERLKRLVRDAIAAVPAE 245 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999998654
No 9
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=100.00 E-value=4.8e-51 Score=395.51 Aligned_cols=244 Identities=24% Similarity=0.323 Sum_probs=213.3
Q ss_pred CCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEe--cceeeeecCCCCccccHH--
Q psy9643 145 RPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCM--QGRFHYYEGYPLWKCAMP-- 220 (412)
Q Consensus 145 e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~--qgr~H~yeg~~~~~v~~~-- 220 (412)
.+++|||+||||++++ .+++..+.++++.++++ +++++.|.++|++|+++ |||.|.| +|+++||+
T Consensus 3 ~~~igIIgGSGl~~l~-~l~~~~~~~~~tp~G~p-------s~~l~~G~l~g~~v~~l~RhGr~H~y---~p~~i~~rAn 71 (290)
T PRK07432 3 QAKIGIIGGSGLYKME-ALKDVEEVQLETPFGSP-------SDALIVGTLDGTRVAFLARHGRNHTL---LPTELPFRAN 71 (290)
T ss_pred CCcEEEEecCccCChh-hcCcceEEEeeCCCCCC-------CCCEEEEEECCEEEEEEECCCCCCcc---ChhhcCcHHH
Confidence 4689999999999976 45566666666555543 46899999999999999 9999996 89999996
Q ss_pred HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHH
Q psy9643 221 IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIAR 300 (412)
Q Consensus 221 i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~ 300 (412)
+|+++.+||++||.+|++|++|++++|||+|+++||||+++ .+|+..... . ...|++++++||++||+.+.++++
T Consensus 72 i~alk~lGv~~ii~tna~Gsln~~~~pGdlvv~~D~Id~t~---~rp~t~~~~-~-~~~~~~~~~~y~~~Lr~~l~~~a~ 146 (290)
T PRK07432 72 IYAMKQLGVEYLISASAVGSLKEEAKPLDMVVPDQFIDRTK---NRISTFFGE-G-IVAHIGFGDPICPALAGVLADAIA 146 (290)
T ss_pred HHHHHHcCCCEEEEEeccccccCCCCCCCEEeecceecCCC---CCCCcccCC-C-cccCCcCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987 455432111 1 123689999999999999999999
Q ss_pred HcCCC--cceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCH
Q psy9643 301 DLNMS--SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANH 378 (412)
Q Consensus 301 ~~g~~--~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~ 378 (412)
++++. .++++|||+++.||+|||+||+||+|+||||+||||++||+++|+|+||||++|++|||+|+|. ...+++||
T Consensus 147 ~~~~~~~~~~~~GvYv~~~GPrfET~AEir~~r~~GaDvVGMS~vPEvilAre~Gl~~a~ls~VTN~a~g~-~~~~~~s~ 225 (290)
T PRK07432 147 SLNLPDVTLHRGGTYVCMEGPAFSTKAESNLYRSWGATVIGMTNLPEAKLAREAEIAYATLALVTDYDCWH-PDHDSVTV 225 (290)
T ss_pred HcCCCccceeCCeEEEEeeCCCCCcHHHHHHHHHcCCCEeccCchHHHHHHHhCCCcEEEEEEEeeccccc-CcCCCCCH
Confidence 98872 1345899999999999999999999999999999999999999999999999999999999874 23467899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy9643 379 EEVIQAGKLRGPMIKSMVTRIVSYIGE 405 (412)
Q Consensus 379 ~ev~~~~~~~~~~~~~ll~~~i~~l~~ 405 (412)
+||++.++++++++.++|.++|+++..
T Consensus 226 eeV~~~~~~~~~~~~~ll~~~i~~l~~ 252 (290)
T PRK07432 226 EMVIGNLHKNAVNAQKVIQETVRRLSA 252 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999855
No 10
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=100.00 E-value=7.1e-51 Score=392.46 Aligned_cols=242 Identities=26% Similarity=0.383 Sum_probs=213.5
Q ss_pred CCCceeEeeCcCcc---cccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEe--cceeeeecCCCCcccc
Q psy9643 144 IRPKIGIICGSGLS---TIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCM--QGRFHYYEGYPLWKCA 218 (412)
Q Consensus 144 ~e~~~GIi~GsGl~---~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~--qgr~H~yeg~~~~~v~ 218 (412)
..+++|||+||||+ .+++..++..++||.+ .+++++.|.++|++|+++ |||.|.|||+.+. ..
T Consensus 6 ~~~~igiIgGSGl~~~~~l~~~~~~~~~tpyg~-----------p~~~l~~g~l~g~~v~~l~RhGr~H~y~~~~i~-~~ 73 (267)
T PRK08564 6 EKASIGIIGGSGLYDPGIFENSKEVKVYTPYGE-----------PSDNIIIGEIEGVEVAFLPRHGRGHRIPPHKIN-YR 73 (267)
T ss_pred CCceEEEEecCCCCCCcccccceeeeEEcCCCC-----------CccCEEEEEECCEEEEEEeCCCCCcccCCccCc-ch
Confidence 46899999999994 4566666777778774 146899999999999999 9999999877766 45
Q ss_pred HHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHH
Q psy9643 219 MPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDI 298 (412)
Q Consensus 219 ~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~ 298 (412)
+|+|+++.+||++||.+|++|++|+++++||+|+++|||++++ .+|+.+..... ..|++|+++||++||+.+.++
T Consensus 74 a~i~aLk~LGvk~iI~tnavGsl~~~~~pGDlVv~~D~I~~tg---~~p~t~~~g~~--~~~~~~~~~y~~~Lr~~l~~a 148 (267)
T PRK08564 74 ANIWALKELGVEWVIAVSAVGSLREDYKPGDFVIPDQFIDMTK---KREYTFYDGPV--VAHVSMADPFCPELRKIIIET 148 (267)
T ss_pred HHHHHHHHCCCcEEEEeccccccCCCCCCCCEEeehhhhccCC---CCCcccCCCCc--cccCCCCcccCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999988 45555432111 235889999999999999999
Q ss_pred HHHcCCCcceeeceEEEEecCccCCHHHHHHHHHc-CCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCC
Q psy9643 299 ARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRIC-GVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEAN 377 (412)
Q Consensus 299 a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~-Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s 377 (412)
+++.|++ ++++|||+++.||+|||+||+||+|++ |||+||||++||+++|||+||+|++|++|||+++| .+.+++
T Consensus 149 A~~~g~~-~~~~GvY~~~~GP~fET~AEir~~r~~~GaD~VGMS~vpEvilAre~g~~~~~is~VtN~a~g---~~~~~t 224 (267)
T PRK08564 149 AKELGIR-THEKGTYICIEGPRFSTRAESRMWREVFKADIIGMTLVPEVNLACELGMCYATIAMVTDYDVW---AEKPVT 224 (267)
T ss_pred HHHcCCc-eecceEEEEeeCCCcCCHHHHHHHHHccCCCEeccCccHHHHHHHHcCCceEEEEEEeccccC---CCCCCC
Confidence 9999998 444799999999999999999999996 99999999999999999999999999999999986 457899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643 378 HEEVIQAGKLRGPMIKSMVTRIVSYIGEH 406 (412)
Q Consensus 378 ~~ev~~~~~~~~~~~~~ll~~~i~~l~~~ 406 (412)
|+|+++.+++++.++.+++.++|++++.+
T Consensus 225 ~~ev~~~~~~~~~~~~~ll~~~i~~l~~~ 253 (267)
T PRK08564 225 AEEVTRVMAENTEKAKKLLYEAIPRIPEE 253 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999998643
No 11
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=100.00 E-value=3.5e-49 Score=376.73 Aligned_cols=235 Identities=26% Similarity=0.386 Sum_probs=209.5
Q ss_pred ceeEeeCcCcccccccc---cCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEec--ceeeeecCCCCccccH--
Q psy9643 147 KIGIICGSGLSTIADSI---TDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ--GRFHYYEGYPLWKCAM-- 219 (412)
Q Consensus 147 ~~GIi~GsGl~~~~~~~---~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~q--gr~H~yeg~~~~~v~~-- 219 (412)
++|||+||||+++++.. +...++||.+. +++++.|+++|++|++++ |+.|. |+|+++||
T Consensus 1 ~igiI~Gsgl~~~~~~~~~~~~~~~tpyg~~-----------~~~l~~G~l~g~~Vv~l~RhG~~h~---~~~~~V~~~A 66 (245)
T PRK09136 1 MLAIIGGTGLTQLAGLDIVQRQVVRTPYGAP-----------SGPLTFGTLAGREVVFLARHGHGHT---IPPHKVNYRA 66 (245)
T ss_pred CEEEEeccccchhhhccccceeEEEcCCCCC-----------cccEEEEEECCEEEEEEecCCCCCC---CChHHcCcHH
Confidence 48999999999987543 55666777652 458999999999999885 55554 59999998
Q ss_pred HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHH
Q psy9643 220 PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIA 299 (412)
Q Consensus 220 ~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a 299 (412)
++|+++.+||+.||++|++|++|+++++||+|+++||||+++ .+|+.+.+...++.+|.++.++||++|++.+.+++
T Consensus 67 ~i~al~~lGv~~ii~t~aaG~l~~~l~~Gdlvi~~d~i~~~~---~~p~t~~~~~~~~~~~~~~~~~~d~~L~~~~~~~a 143 (245)
T PRK09136 67 NIWALKQAGATRVLAVNTVGGIHADMGPGTLVVPDQIIDYTW---GRKSTFFEGDGEEVTHIDFTHPYSPMLRQRLLAAA 143 (245)
T ss_pred HHHHHHHcCCCEEEEecccccCCCCCCCCCEEEEHHHhhccC---CCCCCCCCCCCCCCCCCCCcccCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999987 56666655556778899999999999999999999
Q ss_pred HHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCC-CCH
Q psy9643 300 RDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAE-ANH 378 (412)
Q Consensus 300 ~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~-~s~ 378 (412)
++.|++ ++++|+|++++||+|+|+||+++++++|||+||||++||+++|+++|+||++|++|||+|+|. .+++ ++|
T Consensus 144 ~~~~~~-~~~~Gvy~~~~GP~feT~AE~r~lr~~Gad~VgMs~~pEa~~A~~~gi~~~~i~~Vtn~a~g~--~~~~~~~~ 220 (245)
T PRK09136 144 RAAGVS-LVDGGVYAATQGPRLETAAEIARLERDGCDLVGMTGMPEAALARELGLPYACLALVANWAAGR--GDSAEITM 220 (245)
T ss_pred HHcCCc-EEeccEEEEeeCCCcCCHHHHHHHHHcCCCEEcCcHHHHHHHHHHcCCCEEEEEEEeecccCc--CCCCCCCH
Confidence 999998 455799999999999999999999999999999999999999999999999999999999874 4444 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9643 379 EEVIQAGKLRGPMIKSMVTRIVS 401 (412)
Q Consensus 379 ~ev~~~~~~~~~~~~~ll~~~i~ 401 (412)
+|+++.++++++++.+++.++|+
T Consensus 221 ~ev~~~~~~~~~~~~~l~~~~i~ 243 (245)
T PRK09136 221 AEIEAALDAAMGRVRELLERLVR 243 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998875
No 12
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=100.00 E-value=1.9e-46 Score=359.89 Aligned_cols=247 Identities=55% Similarity=0.948 Sum_probs=227.1
Q ss_pred ceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHH
Q psy9643 147 KIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL 226 (412)
Q Consensus 147 ~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~ 226 (412)
++|||+||||+++.+..++...+||+++|+||..+++||+++++.|+++|++|++++++.|.|+|+.++.+.+++++++.
T Consensus 1 ~~~ii~gsg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~g~~Vv~~~~gih~~~Gk~~~a~~~~~~~l~~ 80 (248)
T TIGR01697 1 DVAIILGSGLGALADQVEDAVIIPYEKIPGFPVSTVVGHAGELVFGRLGGKPVVCMQGRFHYYEGYDMATVTFPVRVMKL 80 (248)
T ss_pred CEEEEeeCCcchhhhhcccceEeeCccCCCCCCcccCCCCccEEEEEECCEEEEEEcCCCcccCCCCHHHHHHHHHHHHH
Confidence 47999999999976767788899999999999999999999999999999999999999999999999999888999999
Q ss_pred cCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCc
Q psy9643 227 VGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSS 306 (412)
Q Consensus 227 lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~ 306 (412)
+|++.||.+|++|++++++++||+|+++|++++++ .+|+.+.+...++..|+.+..+||++|++.+.+++++.|++
T Consensus 81 ~Gv~~II~~GsaGsl~~~l~~GDiVI~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~L~~~l~~~a~~~~~~- 156 (248)
T TIGR01697 81 LGVEILVVTNAAGGLNPDFKPGDLMIIKDHINLPG---LNPLVGPNDDRFGTRFPDLSNAYDRELRKLAQDVAKELGFP- 156 (248)
T ss_pred cCCCEEEEecccccCCCCCCCCCEEEEhhhhhcCC---CCCccCCCcccCCceeCCCCcccCHHHHHHHHHHHHHcCCc-
Confidence 99999999999999999999999999999999987 57776665555666778888889999999999999999998
Q ss_pred ceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHH
Q psy9643 307 IVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGK 386 (412)
Q Consensus 307 ~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~ 386 (412)
++.|+|++++||+|+|++|.++++++|+++||||++||+++|+++|+||++|++|||+++|. .+++++++++.+.++
T Consensus 157 -~~~G~~~~~~G~~f~t~~e~~~~~~~g~~~VeME~aa~a~lA~~~gv~~~~i~~Vsd~a~g~--~~~~~~~~~~~~~~~ 233 (248)
T TIGR01697 157 -LTEGVYVMVSGPSYETPAEIRMLRILGADAVGMSTVPEVIVARHCGIKVLAVSLITNMAAGI--TDVPLSHEEVLAAAA 233 (248)
T ss_pred -eeeEEEEEEECCCcCCHHHHHHHHHcCCeEEccChHHHHHHHHHCCCcEEEEEEEEecCccc--CCCCCCHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999752 457889999999998
Q ss_pred HHHHHHHHHHHHHH
Q psy9643 387 LRGPMIKSMVTRIV 400 (412)
Q Consensus 387 ~~~~~~~~ll~~~i 400 (412)
++++.+.++|.++|
T Consensus 234 ~~~~~~~~ll~~~~ 247 (248)
T TIGR01697 234 AAAERFISLLEDII 247 (248)
T ss_pred HHHHHHHHHHHHHh
Confidence 88887777777765
No 13
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=100.00 E-value=1.6e-44 Score=348.94 Aligned_cols=239 Identities=29% Similarity=0.457 Sum_probs=210.8
Q ss_pred CceeEeeCcCccc--ccccc-cCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEec--ceeeeecCCCCccccH-
Q psy9643 146 PKIGIICGSGLST--IADSI-TDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ--GRFHYYEGYPLWKCAM- 219 (412)
Q Consensus 146 ~~~GIi~GsGl~~--~~~~~-~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~q--gr~H~yeg~~~~~v~~- 219 (412)
|++|||+|||+.. +.+.+ ++..+++|..+ +++.|+++|++|++++ |+.|.| +++++|+
T Consensus 2 ~~igII~gsgl~~~~l~~~~~~~~~~~~~g~~-------------~~~~G~~~g~~Vv~l~~~G~gh~~---~~~kVn~~ 65 (261)
T PRK08666 2 VRIAIIGGSGVYDPKILENIREETVETPYGEV-------------KVKIGTYAGEEVAFLARHGEGHSV---PPHKINYR 65 (261)
T ss_pred CcEEEEecCCCCccchhhhcccceeEeeCCCC-------------EEEEEEECCEEEEEEeCCCCCCcc---ChhhcchH
Confidence 6799999999977 55555 56666666543 6999999999998665 999996 6888887
Q ss_pred -HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHH
Q psy9643 220 -PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDI 298 (412)
Q Consensus 220 -~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~ 298 (412)
++++++.+||+.||++|++|++++++++||+|+++|++++++ ++|+.+.+...++.+|.++.++||++|++.+.++
T Consensus 66 a~~~~l~~~Gv~~II~tgsaGsl~~~l~~GDiVi~~d~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~L~~~~~~~ 142 (261)
T PRK08666 66 ANIWALKELGVERILATSAVGSLNPNMKPGDFVILDQFLDFTK---NRHYTFYDGGESGVVHVDFTDPYCPELRKALITA 142 (261)
T ss_pred HHHHHHHHCCCCEEEEeccccccCCCCCCCCEEeehhhhhcCC---CCCccccCCCCCCcCCCCCCcccCHHHHHHHHHH
Confidence 789999999999999999999999999999999999999987 5565554434455667888999999999999999
Q ss_pred HHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCH
Q psy9643 299 ARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANH 378 (412)
Q Consensus 299 a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~ 378 (412)
++++|++ ++..|+|++++||+|+|+||.+++++||+|+||||++||+++|+++|+||++|++|||+++| ..+.+++|
T Consensus 143 a~~~g~~-~~~ggvy~~~~Gp~fet~ae~~~~~~~gad~V~Me~~~e~~~A~~~gi~~~~i~~vsn~a~~--~~~~~~~~ 219 (261)
T PRK08666 143 ARELGLT-YHPGGTYVCTEGPRFETAAEIRMFRILGGDLVGMTQVPEAVLARELEMCYATVAIVTNYAAG--ISPTKLTH 219 (261)
T ss_pred HHHCCCc-eEeccEEEEeeCCCcCCHHHHHHHHHcCCCEEccchHHHHHHHHHCCCcEEEEEEEeecccc--CCCCCCCH
Confidence 9999998 34469999999999999999999999999999999999999999999999999999999976 35678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643 379 EEVIQAGKLRGPMIKSMVTRIVSYIGEH 406 (412)
Q Consensus 379 ~ev~~~~~~~~~~~~~ll~~~i~~l~~~ 406 (412)
+++++.+++++.++.+++.+++++++.+
T Consensus 220 ~e~~~~~~~~~~~~~~ll~~~~~~~~~~ 247 (261)
T PRK08666 220 SEVVELMAQNSENIKKLIMKAIELIPKE 247 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 9999999999999999999999998643
No 14
>KOG3985|consensus
Probab=100.00 E-value=2.7e-44 Score=327.25 Aligned_cols=249 Identities=23% Similarity=0.318 Sum_probs=226.1
Q ss_pred CCceeEeeCcCcccccccccCceeeecCCCCCccccCCCC-CceeEEEEeeCCeEEEEe--cceeeeecCCCCccccH--
Q psy9643 145 RPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPG-HKGQLVFGLINGIPIMCM--QGRFHYYEGYPLWKCAM-- 219 (412)
Q Consensus 145 e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pG-H~~~l~~G~~~g~~vv~~--qgr~H~yeg~~~~~v~~-- 219 (412)
..++|||+||||+++ +.++++.+. -..+.+| .++.++.|+++|..++++ |||.|.| .|++|||
T Consensus 9 ~VklGIIGGsGl~dp-~ile~~ve~--------~v~TP~G~pSd~v~~g~i~gv~cvllARHGr~H~i---mPt~Vn~rA 76 (283)
T KOG3985|consen 9 TVKLGIIGGSGLYDP-DILEDPVEL--------VVPTPWGKPSDPVIIGQISGVHCVLLARHGRKHDI---MPTKVNFRA 76 (283)
T ss_pred eEEEEEeccCCCCCc-hhhhcchhh--------cCCCCCCCcCCceeeeecCCeEEEEEeccccCCcc---CCCcCchhH
Confidence 468999999999996 344443331 1125566 367899999999998887 7999985 8999999
Q ss_pred HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHH
Q psy9643 220 PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIA 299 (412)
Q Consensus 220 ~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a 299 (412)
++|+++.+||..||++.++|||+++++|||+|+++++|+.+..|.+++|+|..+...|.+|+++.+|||+++|+.+.+.+
T Consensus 77 NiwALk~~gc~~ii~~tAcGSLre~I~Pgd~v~p~q~IDrTt~R~~tffdg~~~~a~gVcHv~~~~pf~~k~reil~~~a 156 (283)
T KOG3985|consen 77 NIWALKSLGCTAIISFTACGSLREEIKPGDFVLPDQIIDRTTGRPSTFFDGSYDQAGGVCHVPFGPPFSQKLREILISTA 156 (283)
T ss_pred hHHHHHhCCCcEEEEeeccccccccCCCccEecchhhhhhhccCccccccCcccCCCceEeccCCCCcCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999888899999988888899999999999999999999999
Q ss_pred HHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHH
Q psy9643 300 RDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHE 379 (412)
Q Consensus 300 ~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ 379 (412)
++++++ .+..|+.+|++||+|+|+||..|+|+|||+++.|+..||+.+|+|+|+||..+++.|||.+|+ ..+++++.+
T Consensus 157 ~~l~~~-~hd~~tvVciEGPrFStRAES~mfR~wGa~vINMt~iPE~~LAkEagi~Y~~iamaTDYDcWr-~~ee~Vtve 234 (283)
T KOG3985|consen 157 KELTNP-HHDDGTVVCIEGPRFSTRAESKMFRSWGASVINMTVIPEAKLAKEAGIPYQMIAMATDYDCWR-MEEEPVTVE 234 (283)
T ss_pred HHhcCC-cCCceeEEEeeCCccchHHHHHHHHHhccceeeeeechHHHHHHhcCcchhhheeccchhhhh-ccCCCccHH
Confidence 999998 678999999999999999999999999999999999999999999999999999999999997 778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy9643 380 EVIQAGKLRGPMIKSMVTRIVSYIGEHQ 407 (412)
Q Consensus 380 ev~~~~~~~~~~~~~ll~~~i~~l~~~~ 407 (412)
.|++.++.+..+...++.+.+.+|+...
T Consensus 235 ~Vm~~~~~N~~kak~ll~~av~~i~k~~ 262 (283)
T KOG3985|consen 235 TVMKTLANNVRKAKILLLEAVGSIAKED 262 (283)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999987654
No 15
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=100.00 E-value=8.8e-39 Score=305.63 Aligned_cols=232 Identities=25% Similarity=0.388 Sum_probs=201.2
Q ss_pred ceeEeeCcCcccc---cccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEec--ceeeeecCCCCccccH--
Q psy9643 147 KIGIICGSGLSTI---ADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ--GRFHYYEGYPLWKCAM-- 219 (412)
Q Consensus 147 ~~GIi~GsGl~~~---~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~q--gr~H~yeg~~~~~v~~-- 219 (412)
++|||+||||+++ ++..+++.++||.+++ ++++.|+++|++|++++ |+.|.| +|+.+|+
T Consensus 1 ~~~ii~gs~~~~~~~~~~~~~~~~~tp~g~~~-----------~~~~~G~~~g~~vv~~~~~G~g~~~---~~~~vn~~a 66 (241)
T TIGR01694 1 MIGVIGGSGLYDLEGLKDVEEVNVDTPYGNPS-----------APIVVGRVAGVDVAFLPRHGRGHDI---PPHEVNYRA 66 (241)
T ss_pred CEEEEeccccccccccccceEEEEECCCCCCC-----------CCEEEEEECCEEEEEEeCCCCCCcc---ChHHCCcHH
Confidence 4799999999997 5566666677776542 47999999999999865 999986 7999998
Q ss_pred HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHH
Q psy9643 220 PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIA 299 (412)
Q Consensus 220 ~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a 299 (412)
+++.++.+|++.||++|++|++++++++||+|+++|+++++. .+|....+... ..|.++..++|++|++.+.+++
T Consensus 67 ~~~~L~~~Gv~~iI~~GsaG~l~~~l~~GDlVI~~~~i~~~~---~~~~~~~~~~~--~~~~~~~~~~d~~L~~~l~~~a 141 (241)
T TIGR01694 67 NIWALKSLGVKYVISVNAVGSLREEYPPGDLVVPDQFIDRTS---GRPSTFFDGGK--VVHVDFGDPYCEDLRQRLIESL 141 (241)
T ss_pred HHHHHHHcCCCEEEEeccccccCCCCCCCCEEEEhhHhhccC---CCCCccCCCCc--cCCCCCCCCCCHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999886 33322111110 2456677789999999999999
Q ss_pred HHcCCCccee-eceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCH
Q psy9643 300 RDLNMSSIVK-EGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANH 378 (412)
Q Consensus 300 ~~~g~~~~~~-~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~ 378 (412)
++++++ ++ .|+|++++||+|+|++|.++++++|+++||||++||+++|+++|+|+++|++|||.+++ .++++++|
T Consensus 142 ~~~~~~--~~~~G~~~~~~G~~f~t~~e~~~~~~~Ga~aVeME~aa~~~vA~~~gv~~~~i~~Vsd~a~~--~~~~~~~~ 217 (241)
T TIGR01694 142 RRLGLT--VHDGGTYVCTEGPRFSTRAESRMFKSWGADIVGMTGVPEAVLARELELCYATLALVTDYDCW--ISADHVTA 217 (241)
T ss_pred HHcCCc--EEeceEEEeCcCCCcCCHHHHHHHHHcCCeEEeccHHHHHHHHHHCCCCEEEEEEEeecccc--CCCCCCCH
Confidence 999998 66 89999999999999999999999999999999999999999999999999999999975 36788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9643 379 EEVIQAGKLRGPMIKSMVTRIVS 401 (412)
Q Consensus 379 ~ev~~~~~~~~~~~~~ll~~~i~ 401 (412)
+++.+.++++...+.+++.++|.
T Consensus 218 ~e~~~~~~~~~~~~~~~~~~~~~ 240 (241)
T TIGR01694 218 EEVEEVMGENVEKAKRILLEAIK 240 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998875
No 16
>KOG0460|consensus
Probab=99.93 E-value=1.2e-26 Score=224.33 Aligned_cols=154 Identities=38% Similarity=0.587 Sum_probs=128.1
Q ss_pred hhhhccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccc
Q psy9643 82 YAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIA 160 (412)
Q Consensus 82 ~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~ 160 (412)
++.+.++.|+|||+|||+|||||||||||+.+|+++|.+ |......|+++++| ++|+.||||+
T Consensus 42 ~~a~~~f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~A--------PEEkaRGITI-------- 105 (449)
T KOG0460|consen 42 YAAKAVFVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKA--------PEEKARGITI-------- 105 (449)
T ss_pred eccccccccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcC--------hhhhhccceE--------
Confidence 344678999999999999999999999999999999987 77777778776554 5689999999
Q ss_pred ccccCceeeecC-CCCCccccCCCCCce---eEEEEe--eCCeEEEEe-------cceeeeecCCCCccccHHHHHHHHc
Q psy9643 161 DSITDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGL--INGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLV 227 (412)
Q Consensus 161 ~~~~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~--~~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~l 227 (412)
+..++.|+ ..++|.-.|||||+| ||++|+ .+|+.+|+. |+|+|+ .++++.
T Consensus 106 ----n~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHl-------------LLArQV 168 (449)
T KOG0460|consen 106 ----NAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHL-------------LLARQV 168 (449)
T ss_pred ----eeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHH-------------HHHHHc
Confidence 78889999 688999999999999 999996 468777764 899999 899999
Q ss_pred CCCEEEE-EeccCCC-CCCCCCccHHHHHHHHhhccCCCCC-CC
Q psy9643 228 GVTHLLA-TNAAGGL-NPDYEVGDIMIIKDHINLMGFAGNN-PL 268 (412)
Q Consensus 228 Gv~~II~-~n~~G~l-~~~~~~Gd~vi~~d~i~~~~~~~~~-pl 268 (412)
||++|++ +||++.+ ++++-.--.|.++..++..+|.|++ |.
T Consensus 169 GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~Pv 212 (449)
T KOG0460|consen 169 GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPV 212 (449)
T ss_pred CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCe
Confidence 9999886 8999998 4443322245678999999988765 54
No 17
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.6e-25 Score=218.18 Aligned_cols=200 Identities=22% Similarity=0.418 Sum_probs=136.9
Q ss_pred cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHH----------HHHhhhcCCCCceeEeeCcCcc
Q psy9643 89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIA----------KFLLDSISIRPKIGIICGSGLS 157 (412)
Q Consensus 89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~----------~~i~~~~~~e~~~GIi~GsGl~ 157 (412)
..+|||+|+++|||||||||||+||| ||+ |.++.++++++++.+ +|++|++++||++|+|+..
T Consensus 2 ~~~Kph~nl~~iGHVD~GKSTl~GrL---ly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~--- 75 (428)
T COG5256 2 ASEKPHLNLVFIGHVDAGKSTLVGRL---LYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDV--- 75 (428)
T ss_pred CCCCCceEEEEEcCCCCCchhhhhhh---HHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEE---
Confidence 35899999999999999999999999 898 999999999987654 7999999999999999944
Q ss_pred cccccccCceeeecC-CCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeec-CCCCccccH-HHHHHHHcCCC
Q psy9643 158 TIADSITDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYE-GYPLWKCAM-PIRVMKLVGVT 230 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~ye-g~~~~~v~~-~i~ll~~lGv~ 230 (412)
....|+ +.+.|+++|||||+| +|+.|..+ +..|+++..+...|| |..+.-... .+.|++.+|++
T Consensus 76 ---------~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~ 146 (428)
T COG5256 76 ---------AHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIK 146 (428)
T ss_pred ---------EEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCc
Confidence 344445 556789999999999 89999765 445555422222222 211111111 22899999999
Q ss_pred EEEE-EeccCCCCCCCCCccHHHHHH----HHhhccCCCCC----C---CCCCC------CCCC--CCCC-------CCC
Q psy9643 231 HLLA-TNAAGGLNPDYEVGDIMIIKD----HINLMGFAGNN----P---LLGVN------EDRF--GPRF-------PPM 283 (412)
Q Consensus 231 ~II~-~n~~G~l~~~~~~Gd~vi~~d----~i~~~~~~~~~----p---l~g~~------~~~~--g~~~-------~~~ 283 (412)
++|+ +||||.++ |..-.+-.+.+ ++...++...+ | |.|.| ..+| |+.+ ...
T Consensus 147 ~lIVavNKMD~v~--wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd~~~~p 224 (428)
T COG5256 147 QLIVAVNKMDLVS--WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALDQLEPP 224 (428)
T ss_pred eEEEEEEcccccc--cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHhccCCC
Confidence 9887 89999987 66666655443 33333332221 1 22322 1122 3332 223
Q ss_pred cccccHHHHHHHHHHHHHcCCC
Q psy9643 284 NKAYNKQLRAATLDIARDLNMS 305 (412)
Q Consensus 284 ~~~~d~~Lr~~~~~~a~~~g~~ 305 (412)
..+.|.+||-.+.++....|+.
T Consensus 225 ~~~~d~Plr~pI~~v~~i~~~g 246 (428)
T COG5256 225 ERPLDKPLRLPIQDVYSISGIG 246 (428)
T ss_pred CCCCCCCeEeEeeeEEEecCCc
Confidence 4568888888888877655554
No 18
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.3e-24 Score=206.88 Aligned_cols=152 Identities=32% Similarity=0.519 Sum_probs=123.5
Q ss_pred hccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc
Q psy9643 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI 163 (412)
Q Consensus 85 ~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~ 163 (412)
|+.+.|.|||+|||+|||||||||||+.+|++.|.+ +......|+++ |..++|+++|||+
T Consensus 3 k~kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~i--------d~aPeEk~rGITI----------- 63 (394)
T COG0050 3 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQI--------DNAPEEKARGITI----------- 63 (394)
T ss_pred hhhhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhh--------ccCchHhhcCcee-----------
Confidence 678999999999999999999999999999998886 55555555554 3456789999999
Q ss_pred cCceeeecC-CCCCccccCCCCCce---eEEEEee--CCeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCC
Q psy9643 164 TDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLI--NGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVT 230 (412)
Q Consensus 164 ~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~--~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~ 230 (412)
+..+..|+ +.++|..+|||||+| ||++|.+ +|+.+|+. |+|+|. .++++.||+
T Consensus 64 -ntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi-------------LlarqvGvp 129 (394)
T COG0050 64 -NTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-------------LLARQVGVP 129 (394)
T ss_pred -ccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh-------------hhhhhcCCc
Confidence 77788888 788999999999999 9999965 57777764 899998 899999998
Q ss_pred EEEE-EeccCCCC-CCCCCccHHHHHHHHhhccCCC-CCCCC
Q psy9643 231 HLLA-TNAAGGLN-PDYEVGDIMIIKDHINLMGFAG-NNPLL 269 (412)
Q Consensus 231 ~II~-~n~~G~l~-~~~~~Gd~vi~~d~i~~~~~~~-~~pl~ 269 (412)
+|++ .||++.++ +++-.---+.+.|+++..+|+| +.|..
T Consensus 130 ~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii 171 (394)
T COG0050 130 YIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPII 171 (394)
T ss_pred EEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCccee
Confidence 8776 89999987 3333333456789999888875 45653
No 19
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from most bacteria (gene deoD), which catalyses the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. Uridine phosphorylase (2.4.2.3 from EC) (UdRPase) from bacteria (gene udp) and mammals, which catalyses the cleavage of uridine into uracil and ribose-1-phosphate, the products of the reaction are used either as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from Sulfolobus solfataricus []. Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from mammals as well as from some bacteria (gene deoD). This enzyme catalyzes the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from eukaryotes []. ; GO: 0003824 catalytic activity, 0009116 nucleoside metabolic process; PDB: 3OZE_A 1K27_A 1CB0_A 1CG6_A 1SD1_A 3LN5_C 3OZD_B 3OZC_A 1SD2_A 1U1G_C ....
Probab=99.85 E-value=1.9e-21 Score=183.93 Aligned_cols=203 Identities=22% Similarity=0.253 Sum_probs=157.1
Q ss_pred eeEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCC
Q psy9643 187 GQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNN 266 (412)
Q Consensus 187 ~~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~ 266 (412)
.+++.|.++|..+++.++.. |.+........++++.++++.||.+|.||++++++++||++++++.+++++. .
T Consensus 32 ~~~~~g~~~~~~v~i~~~g~----G~~~aa~~~~~~~l~~~~~~~vi~~G~~G~~~~~~~~GDvvi~~~~~~~d~~---~ 104 (234)
T PF01048_consen 32 FTYYTGKYGGKNVVIVSTGM----GPVNAAVIATQRLLEEFGPDLVIMIGICGGLDPDIKLGDVVIPQDAIRYDGD---S 104 (234)
T ss_dssp EEEEEEEETTEEEEEEEESS----SHHHHHHHHHHHHHHHCTSSEEEEEEEEEESSTTS-TTEEEEEEEEEEESSH---H
T ss_pred cEEEEEEECCEEEEEEECCc----CCchHHHHHHHHHHHhCCCeEEEEeccccccccccccceEEecccEEeccCc---c
Confidence 48999999999888875331 2111111234578889999999999999999999999999999998876552 1
Q ss_pred CCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHH
Q psy9643 267 PLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEV 346 (412)
Q Consensus 267 pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa 346 (412)
+..+.+.. ..........++|+.|++.+.+.+++.+.+ ++.|++++.+++.+++.++.+.++++|+++++||+++++
T Consensus 105 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~G~~~s~~~~~~~~~~~~~~~~~~g~~~vdME~aa~~ 181 (234)
T PF01048_consen 105 PSFFFDEE-PPYAPVSRPAPADPDLREALKEAAKALGIP--VHEGPIASGDSFYRETEAEIELLQKFGADAVDMESAAVA 181 (234)
T ss_dssp GHHSSETT-SGTSTSCSTEESHHHHHHHHHHHHHHTTST--EEEEEEEEESSSSGSHHHHHHHHHHTTEEEEESSHHHHH
T ss_pred cccccccc-ccccccccccccCHHHHHHHHHhhhccccc--cccceEEEEeeeccchhhHHHHHHhcccccccchHHHHH
Confidence 11111100 011112233468999999999999999998 999999998888888989999999999999999999999
Q ss_pred HHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643 347 ITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVS 401 (412)
Q Consensus 347 ~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~ 401 (412)
.+|+++|+|+++|+.|||++.. ....+.++++........+..+.+++.++|+
T Consensus 182 ~~a~~~~ip~~~i~~isD~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~ 234 (234)
T PF01048_consen 182 QAARERGIPFIAIRGISDYADG--GDDDEWTFEEFKEFLQLAAENAAAILEELLK 234 (234)
T ss_dssp HHHHHTT-EEEEEEEEEEETTT--TSSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEEEEcCCcc--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998853 2356677788888888888888888888874
No 20
>KOG0460|consensus
Probab=99.84 E-value=9.3e-22 Score=190.49 Aligned_cols=83 Identities=43% Similarity=0.740 Sum_probs=77.3
Q ss_pred EEee---cC-CCHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCCCCCccCcc-----ccchhhcccccccc
Q psy9643 3 VYYI---DA-ADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGIIPLY-----PNDKFEINKLNVFV 73 (412)
Q Consensus 3 ~~~~---d~-~d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 73 (412)
|||+ |+ +|+|++||||||+||||++||||||++|||+||||+|||++++++|.++++ .|+.+-+|.++
T Consensus 174 vvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~--- 250 (449)
T KOG0460|consen 174 VVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERD--- 250 (449)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccc---
Confidence 7888 88 599999999999999999999999999999999999999999999999988 38999999999
Q ss_pred ccccccchhhhhccccC
Q psy9643 74 PLINSRRGYAEKQVYSR 90 (412)
Q Consensus 74 ~~~~~~~~~~~~~~~~~ 90 (412)
++++|+||++.+++-
T Consensus 251 --~~~pFl~pie~vfsI 265 (449)
T KOG0460|consen 251 --LDKPFLLPIEDVFSI 265 (449)
T ss_pred --cCCCceeehhheeee
Confidence 888899999998853
No 21
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=99.83 E-value=1.3e-19 Score=172.73 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=147.9
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
+++.|.++|.+|++.++. ++.+|.+ ..++..++++.||++|.||++++++++||+++.++.++++..
T Consensus 33 ~~~~g~~~~~~vv~~~sG--------iGkvnAA~~~~~li~~f~~~~IIn~G~aG~l~~~l~iGDvVi~~~~~~~D~~-- 102 (236)
T PRK06714 33 EFHFHTINDLEIISVITG--------VGKVSCASCVQLLISEFQPDELFMTGICGSLSNKVKNGHIVVALNAIQHDVT-- 102 (236)
T ss_pred EEEEEEECCEEEEEEeCC--------CCHHHHHHHHHHHHHhCCCCEEEEEEcccCCCCCCCCCCEEEECeeeeccCc--
Confidence 789999999999988643 3455553 478889999999999999999999999999999998887641
Q ss_pred CCCCCCCCCCCCCCC-CCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHH--HHHHcCCcEEeCc
Q psy9643 265 NNPLLGVNEDRFGPR-FPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELN--MLRICGVDAVGMS 341 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~-~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~--~~~~~Gad~VgMe 341 (412)
.+++. . ..++.. ......+.|+.|...+++... +.+ ++.|.+ .+|++|.+..+.+ ..+.+|+++|+||
T Consensus 103 ~~~~~-~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~--~~~G~i--~SgD~Fv~~~~~~~~l~~~~~a~~vdME 173 (236)
T PRK06714 103 AAGSG-E--DVFNLYNGRTAPIETTKSLVRRIKKIRS--YDP--IHFGTF--LSGDQRIRSSEMRYLLHTVYGALAVDQE 173 (236)
T ss_pred cccCC-c--ccccccCCccccccCCHHHHHHHHHHhc--cCC--eEEeEE--EecCeecCCHHHHHHHHHHCCCeEEEeh
Confidence 22221 0 001100 011123457888888776543 344 788965 5899998655543 4567899999999
Q ss_pred hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q psy9643 342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLN 409 (412)
Q Consensus 342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~~~~ 409 (412)
+++.+++|+.+|+|+++|+.|||.+ +.+...++++++..+.+++ .+++.++|+++.-+-.|
T Consensus 174 ~aAvA~vc~~~~vP~l~IR~ISD~a----~~~~~~~~~~f~~~aa~~s---a~~~~~~l~~~~~~~~~ 234 (236)
T PRK06714 174 VAAFAYVCQINKKPFLCLKAASDQA----NDKTKEEQKIFKMLACERA---CEHLIAFLRVYEINVVN 234 (236)
T ss_pred HHHHHHHHHHhCCCEEEEEEeccCC----CCccccCHHHHHHHHHHHH---HHHHHHHHHHhHhhhhc
Confidence 9999999999999999999999998 3566778999887776665 46888999988776655
No 22
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=99.82 E-value=3.6e-19 Score=168.82 Aligned_cols=192 Identities=19% Similarity=0.290 Sum_probs=146.8
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
.++.|.++|++|++..+.. +.++.. .+++..++++.||++|.+|++++++++||+++++++++++. +
T Consensus 32 ~~~~g~~~g~~v~v~~tG~--------G~~~aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~GDvvi~~~~~~~d~--~ 101 (230)
T PRK05584 32 EFYTGTLHGHEVVLVLSGI--------GKVAAALTATILIEHFKVDAVINTGVAGGLAPGLKVGDVVVADELVQHDV--D 101 (230)
T ss_pred EEEEEEECCEEEEEEECCc--------CHHHHHHHHHHHHHhcCCCEEEEEEecCCCCCCCccCCEEEECeEEEecc--C
Confidence 6888999999999886543 233332 36777899999999999999999999999999999987654 1
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC-CHHHHHHHH-Hc-CCcEEeCc
Q psy9643 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE-TVAELNMLR-IC-GVDAVGMS 341 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe-T~AE~~~~~-~~-Gad~VgMe 341 (412)
.+++..... . .+. .+...++|+.|++.+.+.+++.+++ ++.|.+ .+|++|. +..+.+.++ ++ |+++++||
T Consensus 102 ~~~~~~~~~-~-~~~-~~~~~~~d~~L~~~~~~~~~~~~~~--~~~G~~--~s~d~f~~~~~~~~~l~~~~~~~~~veME 174 (230)
T PRK05584 102 VTAFGYPYG-Q-VPG-LPAAFKADEKLVALAEKAAKELNLN--VHRGLI--ASGDQFIAGAEKVAAIRAEFPDALAVEME 174 (230)
T ss_pred ccccCCcCC-c-cCC-CCcceeCCHHHHHHHHHHHHhcCCc--EEEEEE--EEcchhcCCHHHHHHHHHhCCCCeEEech
Confidence 222211100 0 011 1223678999999999999999988 889976 4899997 566666665 57 99999999
Q ss_pred hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
+++++++|+.+|+|+++|+.|||.+. +....+++++...+++++ .+++..+|..+
T Consensus 175 ~aa~a~va~~~~vp~~~ir~vSd~~~----~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~ 229 (230)
T PRK05584 175 GAAIAQVCHEFGVPFVVVRAISDTAD----DEAHVSFDEFLAVAAKYS---ANILKRMLEKL 229 (230)
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCC----CcccccHHHHHHHHHHHH---HHHHHHHHHhc
Confidence 99999999999999999999999994 345668888877665555 45677777654
No 23
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=99.81 E-value=4.6e-19 Score=168.80 Aligned_cols=190 Identities=16% Similarity=0.232 Sum_probs=142.8
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
.++.|+++|.+|++.++. ++.+|.+ .+++..++++.||++|.||++++++++||+|+.+..++++..
T Consensus 33 ~~~~G~~~g~~v~v~~sG--------iG~vnAA~~~~~li~~f~~~~II~~G~AG~l~~~l~iGDvVi~~~~~~~D~~-- 102 (233)
T PRK14697 33 PFYVGEFMGTEVIVTRCG--------VGKVNAAACTQTLIHKFDVDAIINTGVAGGLHPDVKVGDIVISTNVTHHDVS-- 102 (233)
T ss_pred EEEEEEECCEEEEEEECC--------CCHHHHHHHHHHHHHhcCCCEEEEEecccCCCCCCCcCCEEEECeeEEcCCC--
Confidence 688999999999988643 2344553 478889999999999999999999999999999998887651
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHH--cCCCcceeeceEEEEecCccCC-HHHHH-HHHHcCCcEEeC
Q psy9643 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD--LNMSSIVKEGVYSVIGGPNFET-VAELN-MLRICGVDAVGM 340 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~--~g~~~~~~~Gvy~~~~GP~feT-~AE~~-~~~~~Gad~VgM 340 (412)
.+.+.+. + +. +..++.|.+|.+.+.+.++. .+++ ++.|.+ .+|++|.+ +.+.. .++++++++|+|
T Consensus 103 ~~~~~~~----~-p~--~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~G~i--~SgD~fi~~~~~~~~l~~~~~~~~vdM 171 (233)
T PRK14697 103 KTQMKNL----F-PF--QEEFIASKELVELARKACNSSSLHIE--IHEGRI--VSGECFVEDSKLKAKLIDEYAPHCTEM 171 (233)
T ss_pred hhhhccc----C-CC--CcccCCCHHHHHHHHHHhhhccCCcc--EEEeEE--EEcCeecCCHHHHHHHHHhcCCeEEEe
Confidence 1111110 0 00 11234689999988887754 3455 888965 58999985 44433 557799999999
Q ss_pred chhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy9643 341 STVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405 (412)
Q Consensus 341 e~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~ 405 (412)
|+++.+++|+.+|+||++||.|||.+. .+...+++++...+. ..+.+++.+++.++..
T Consensus 172 E~aAva~v~~~~~vpfl~iR~ISD~a~----~~~~~~~~~~~~~aa---~~~~~~~~~~l~~~~~ 229 (233)
T PRK14697 172 EGAAIGHVAYINEVPFLVIRCISDSAD----DEAQISYDDFAKTAA---NYCSEIIVEMLKNISS 229 (233)
T ss_pred hHHHHHHHHHHcCCCEEEEEEeccCCC----CCCcCCHHHHHHHHH---HHHHHHHHHHHHHhhh
Confidence 999999999999999999999999983 456778888875443 3445677777776644
No 24
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.80 E-value=8.9e-19 Score=182.38 Aligned_cols=193 Identities=16% Similarity=0.200 Sum_probs=147.0
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
.++.|.++|.+|++.++. ++.+|++ .+++..++++.||++|.+|++++++++||+|+++..++++..
T Consensus 33 ~~~~G~~~g~~v~v~~sG--------iG~v~AA~~~~~li~~~~~~~ii~~G~aG~l~~~l~~gDvvi~~~~~~~d~~-- 102 (459)
T PRK06698 33 PFYVGEFMGTEVIVTRCG--------VGKVNAAACTQTLIHKFDVDAIINTGVAGGLHPDVKVGDIVISTNVTHHDVS-- 102 (459)
T ss_pred EEEEEEECCEEEEEEECC--------CCHHHHHHHHHHHHHhcCCCEEEEEecccCCCCCCcCCCEEEEceeEEccCC--
Confidence 789999999999998643 3445554 377789999999999999999999999999999999887651
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHH-HH-HHHHcCCcEEeCch
Q psy9643 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE-LN-MLRICGVDAVGMST 342 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE-~~-~~~~~Gad~VgMe~ 342 (412)
.+.+.+. -+. +..++.|++|.+.+.+.++..+....++.|.+ .+|++|.+..+ .+ .++++|+++|+||+
T Consensus 103 ~~~~~~~-----~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~G~i--~sgd~f~~~~~~~~~l~~~~~a~~veME~ 173 (459)
T PRK06698 103 KTQMKNL-----FPF--QEEFIASKELVELARKACNSSSLHMEIHEGRI--VSGECFVEDSKLKAKLIDEYAPHCTEMEG 173 (459)
T ss_pred ccccCCc-----CCC--CCCcCCCHHHHHHHHHHHHhccCCccEEEeeE--EecCeecCCHHHHHHHHHHcCCcEEehhh
Confidence 1222110 011 12245689999999998876533223889965 58999986544 33 55789999999999
Q ss_pred hHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643 343 VHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEH 406 (412)
Q Consensus 343 ~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~ 406 (412)
++.+++|+.+|+||++||.|||.+ +.+...+++++.+.+.+++ .+++.++|+++...
T Consensus 174 aava~va~~~~vp~~~iR~iSD~a----~~~~~~~~~~~~~~a~~~~---~~~v~~~l~~~~~~ 230 (459)
T PRK06698 174 AAIGHVAYINEVPFLVIRCISDSA----DDEAQISYDDFAKTAANYC---SEIIVEMLKTISSK 230 (459)
T ss_pred HHHHHHHHHcCCCEEEEEEeccCC----CCCCccCHHHHHHHHHHHH---HHHHHHHHHHhccc
Confidence 999999999999999999999999 3567788998876555544 45777888776443
No 25
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=99.79 E-value=1.7e-18 Score=164.28 Aligned_cols=190 Identities=19% Similarity=0.279 Sum_probs=145.3
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
+++.|.++|.+|++.++.. +.+|.+ .+++..++++.||++|.+|++++++++||+++++..++++. +
T Consensus 31 ~~~~g~~~g~~v~i~~sGi--------G~vnAA~~~~~li~~~~p~~II~~G~aG~l~~~l~~GDvvi~~~~~~~d~--~ 100 (228)
T TIGR01704 31 EIYTGQLNGTEVALLKSGI--------GKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDA--D 100 (228)
T ss_pred EEEEEEECCEEEEEEECCC--------CHHHHHHHHHHHHHhCCCCEEEEEeeccCCCCCCccCCEEEEEEEEEccC--c
Confidence 7899999999999886543 344553 36788899999999999999999999999999998776643 1
Q ss_pred CCCCCCCCCCCCC--CCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHH-HHHH-HHc-CCcEEe
Q psy9643 265 NNPLLGVNEDRFG--PRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE-LNML-RIC-GVDAVG 339 (412)
Q Consensus 265 ~~pl~g~~~~~~g--~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE-~~~~-~~~-Gad~Vg 339 (412)
.+++.- .+| +. .+..+..|++|.+.+.+.+++.+.+ ++.|.. .+|+.|.+..+ .+.+ +++ ++++|+
T Consensus 101 ~~~~~~----~~g~~~~-~~~~~~~d~~L~~~~~~~~~~~~~~--~~~G~i--~T~d~f~~~~~~~~~l~~~~~~~~~vd 171 (228)
T TIGR01704 101 VTAFGY----EYGQLPG-CPAGFKADDKLIAAAEACIAELNLN--AVRGLI--VSGDAFINGSVGLAKIRHNFPQAIAVE 171 (228)
T ss_pred ccccCC----cCCcCCC-CCceeeCCHHHHHHHHHHHHhcCCC--eEEEEE--EEcChhcCCHHHHHHHHHHCCcccEec
Confidence 222210 011 11 1223467999999999999998887 888964 68999976444 4444 557 899999
Q ss_pred CchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 340 MSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 340 Me~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
||+++.+++|+.+|+||++|+.|||.+. .+...++++++..+.+.+ .+++..+|+++
T Consensus 172 ME~aAva~va~~~~ip~~~iR~ISD~a~----~~~~~~~~~~~~~aa~~~---~~~~~~~~~~~ 228 (228)
T TIGR01704 172 MEATAIAHVCHNFNVPFVVVRAISDVAD----QQSHLSFDEFLAVAAKQS---SLMVESLVQKL 228 (228)
T ss_pred ccHHHHHHHHHHhCCCEEEEEEecccCC----CccccCHHHHHHHHHHHH---HHHHHHHHHhC
Confidence 9999999999999999999999999983 455678888877665554 45777777753
No 26
>KOG0458|consensus
Probab=99.79 E-value=8.5e-20 Score=187.59 Aligned_cols=141 Identities=22% Similarity=0.390 Sum_probs=112.9
Q ss_pred cccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcC
Q psy9643 87 VYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSG 155 (412)
Q Consensus 87 ~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsG 155 (412)
.....|+|+|.+++||||+|||||+||| ||. |.++.+...++++ +++|++|.+++||++||+...+
T Consensus 170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~l---LydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~ 246 (603)
T KOG0458|consen 170 EQSDPKDHLNLVVLGHVDAGKSTLMGHL---LYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVK 246 (603)
T ss_pred cccCCccceEEEEEeccccchhhhhhHH---HHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEee
Confidence 3345678999999999999999999999 887 8888877776654 3589999999999999999443
Q ss_pred cccccccccCceeeecC-CCCCccccCCCCCce---eEEEEeeC-CeEEEEe---------------cceeeeecCCCCc
Q psy9643 156 LSTIADSITDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM---------------QGRFHYYEGYPLW 215 (412)
Q Consensus 156 l~~~~~~~~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~---------------qgr~H~yeg~~~~ 215 (412)
...|+ ....++++|+|||+| +|+.|... +..++|. |+|+|+
T Consensus 247 ------------~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha------- 307 (603)
T KOG0458|consen 247 ------------TTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHA------- 307 (603)
T ss_pred ------------eEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHH-------
Confidence 33444 445679999999998 88888765 3445443 677777
Q ss_pred cccHHHHHHHHcCCCEEEE-EeccCCCCCCCCCccHHHHHHHH
Q psy9643 216 KCAMPIRVMKLVGVTHLLA-TNAAGGLNPDYEVGDIMIIKDHI 257 (412)
Q Consensus 216 ~v~~~i~ll~~lGv~~II~-~n~~G~l~~~~~~Gd~vi~~d~i 257 (412)
.+++.||+.++|+ +||+|-+. |...+|..|...+
T Consensus 308 ------~llr~Lgi~qlivaiNKmD~V~--Wsq~RF~eIk~~l 342 (603)
T KOG0458|consen 308 ------LLLRSLGISQLIVAINKMDLVS--WSQDRFEEIKNKL 342 (603)
T ss_pred ------HHHHHcCcceEEEEeecccccC--ccHHHHHHHHHHH
Confidence 8999999999887 89999886 7778888776554
No 27
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=99.77 E-value=2.7e-18 Score=161.23 Aligned_cols=152 Identities=16% Similarity=0.225 Sum_probs=116.9
Q ss_pred HHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHH
Q psy9643 219 MPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDI 298 (412)
Q Consensus 219 ~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~ 298 (412)
.+++.+..+|++.||++|.+|++++++++||+|+++..++. + . .+++|+.|...+.+.
T Consensus 36 ~~~~~l~~~~~~~vI~~G~aG~l~~~l~~Gdvvi~~~~~~~-g----------------~-----~~~~d~~l~~~l~~~ 93 (212)
T TIGR03468 36 AAAARLMAAGAAGLVSFGTAGALDPALQPGDLVVPEEVRAD-G----------------D-----RFPTDPAWRRRLLEA 93 (212)
T ss_pred HHHHHHHHcCCCEEEEEEecccCCCCCCCCCEEeehhheeC-C----------------C-----eecCCHHHHHHHHHH
Confidence 34566689999999999999999999999999998765332 1 1 236799999988888
Q ss_pred HHHcCCCcceeeceEEEEecCccCCHHHHHHH-HHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCC
Q psy9643 299 ARDLNMSSIVKEGVYSVIGGPNFETVAELNML-RICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEAN 377 (412)
Q Consensus 299 a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~-~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s 377 (412)
+. .+++ ++.|+|++.+++. .|++|.+.+ +.+|+++|+||+++++++|+++|+||++|++|||.+. .+.+.+
T Consensus 94 l~-~~~~--~~~G~~~t~d~~~-~~~~~~~~l~~~~ga~aVdMEsaava~va~~~gip~~~ir~ISD~a~----~~~~~~ 165 (212)
T TIGR03468 94 LP-AGLR--VHRGVLAASDTVV-STAAAKAALARATGAAAVDMESGAVAAVAAAAGLPFAVIRVISDPAD----RALPRA 165 (212)
T ss_pred HH-hCCC--eEEEEEEEeCeEe-cCHHHHHHHHHhcCCcEEeChHHHHHHHHHHcCCCEEEEEEEeecCC----CcCchh
Confidence 76 4666 8999987666653 678887655 6799999999999999999999999999999999994 334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643 378 HEEVIQAGKLRGPMIKSMVTRIVSY 402 (412)
Q Consensus 378 ~~ev~~~~~~~~~~~~~ll~~~i~~ 402 (412)
+.+.+ .......+.+++..++++
T Consensus 166 ~~~~~--~~~g~~~~~~ll~~l~~~ 188 (212)
T TIGR03468 166 ALDAL--RPDGSTALAALLRGLLRR 188 (212)
T ss_pred HHHhc--CcccCccHHHHHHHHHhC
Confidence 43333 244444556667766664
No 28
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=99.73 E-value=4.4e-17 Score=153.51 Aligned_cols=178 Identities=10% Similarity=0.079 Sum_probs=128.5
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccH---HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM---PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~---~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
+++.|.++|.+|++.++.. +.+|. ..+++..+|++.||++|.||++ +++++||+++++..++++.
T Consensus 36 ~~y~~~~~g~~v~~~~sGi--------Gkv~aa~~~~~lI~~~~~~~iI~~G~aG~l-~~~~~gdvvi~~~~~~~D~--- 103 (218)
T PRK07164 36 KIAIFRYKNYNILYINTGI--------GLINAALATQKLIEKYQIEIIINYGAVGSN-INIDLGQVVYPEKFYLLDA--- 103 (218)
T ss_pred eEEEEEECCEEEEEEECCC--------CHHHHHHHHHHHHHHcCCCEEEEEEcccCc-CCCCCCCEEEEeeeEEccc---
Confidence 7899999999999876432 34444 3478888999999999999999 9999999999999887764
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCH-HHHHHHHHc-CCcEEeCch
Q psy9643 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETV-AELNMLRIC-GVDAVGMST 342 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~-AE~~~~~~~-Gad~VgMe~ 342 (412)
.+++ .. +| .++.....|.... + +.. ++.|. +.+||+|... .+.+.++++ ++++|+||+
T Consensus 104 ~~~~-~~----~g-~~p~~~~~~~~~~---~-------~~~--~~~~~--i~SgD~Fi~~~~~~~~l~~~~~a~~vDME~ 163 (218)
T PRK07164 104 ITPW-YP----PG-QTPGEKEFYENNK---I-------NKN--FNKIH--LGSSNSFIFDLDKLKIIKDFIFVSFFDMEA 163 (218)
T ss_pred CCcC-CC----cc-cCCCCcccccchh---h-------hcC--CcEEE--EEeCCccCCCHHHHHHHHhcCCCcEEEchH
Confidence 2222 10 11 1111111111110 1 112 44554 3589999764 445556877 999999999
Q ss_pred hHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 343 VHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 343 ~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
++.+++|+.+++|+++|++|||.+. +..+++++.+...+++....+++.++|+++
T Consensus 164 aAiaqv~~~~~vpf~~ir~ISD~~~------~~~~~~~~~~~~~~a~~~~~~~v~~~l~~~ 218 (218)
T PRK07164 164 FALAQVCFKNKVKFYCIKYVSDFIE------NNSDIEIVNNNIKKGSKKALEFIFELLENI 218 (218)
T ss_pred HHHHHHHHHcCCCEEEEEEEccCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999982 235676666677777777788888888764
No 29
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.2e-18 Score=166.34 Aligned_cols=106 Identities=35% Similarity=0.495 Sum_probs=82.8
Q ss_pred EEee---cC-CCHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCCCCC-ccCcc--ccchhhcccccccccc
Q psy9643 3 VYYI---DA-ADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIG-IIPLY--PNDKFEINKLNVFVPL 75 (412)
Q Consensus 3 ~~~~---d~-~d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~ 75 (412)
|||+ || +|+||+|||||||||||++|||||+++|||+||||+|||++++|.. +..++ .|+.+.-|++.
T Consensus 132 vvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~----- 206 (394)
T COG0050 132 VVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD----- 206 (394)
T ss_pred EEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc-----
Confidence 6777 99 6899999999999999999999999999999999999999877543 45555 37888888877
Q ss_pred ccccchhhhhccccCCCC-----------ee----eEEeeecccCCChhhhhH
Q psy9643 76 INSRRGYAEKQVYSRDKP-----------HC----NIGTIGHVDHGKTTLTAA 113 (412)
Q Consensus 76 ~~~~~~~~~~~~~~~~k~-----------~~----ni~~igHVD~GKSTl~~~ 113 (412)
.+++|++|+|.+++-.-. .+ -+-++|.-+.-|||.+|-
T Consensus 207 ~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgv 259 (394)
T COG0050 207 IDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGV 259 (394)
T ss_pred ccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhH
Confidence 888899999998853321 12 133556556667776643
No 30
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.71 E-value=5e-16 Score=147.97 Aligned_cols=194 Identities=13% Similarity=0.157 Sum_probs=147.1
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
.++.|.+.+..+++.+... +.++.+ ..++..++++.+|+++.||++.+.+.+||+++.++.++++. +
T Consensus 34 ~~~~g~~~~~~vvl~~sgI--------G~v~aA~~t~~~i~~~~p~~iI~~G~aGgl~~~~~iGDvvvs~~~~~~D~--d 103 (234)
T COG0775 34 KFYTGQMAGKEVVLVLSGI--------GKVNAALTTTLLLAKFSPDAVINTGSAGGLVSSLAIGDVVVSDALSYHDV--D 103 (234)
T ss_pred EEEEEEEcCeEEEEEEeCc--------CHHHHHHHHHHHHHhcCCCEEEEeeeccCcCCCCccccEEEEhhHhhhhc--c
Confidence 6888999999988876432 334443 36888999999999999999999999999999999999876 2
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHH-H-HHHHc-CCcEEeCc
Q psy9643 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAEL-N-MLRIC-GVDAVGMS 341 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~-~-~~~~~-Gad~VgMe 341 (412)
.+++. ... ...+...+..+..++.+.....+++.+.+.. .+.|.+ .+|++|.+..+. . ..+.+ +|.+|+||
T Consensus 104 ~~~~~-~~~-g~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~Gli--~tgd~fv~~~~~~~~~~~~~~~a~aveME 177 (234)
T COG0775 104 LTAFG-YEI-GQIPTGEPALFEADEELLDLAGEVAGEGKLR--LRTGLI--VTGDRFVTLGEPVAKLRKAFPDALAVEME 177 (234)
T ss_pred ccccc-ccC-CCCCCccchhccccHHHHHHHHHHHHhcCcc--eeEEEE--EcchhhhhcchhHHHHHHHCCCcEEEEec
Confidence 33332 100 0001011133567899999999998886776 899965 689999876653 3 44456 99999999
Q ss_pred hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
+++.+++|+.+++||..|+.|||.++. ...+.+++++++.+.+.+. .++.++++.|
T Consensus 178 ~aaia~v~~~~~vP~~~ir~ISD~a~~---~~~~~~~~~f~~~aa~~s~---~~~~~~~~~l 233 (234)
T COG0775 178 GAAIAQVCYRFGVPFLVLRAISDIADG---GADPVSFDEFLAEAAKQSA---LVLLSALEKL 233 (234)
T ss_pred HHHHHHHHHHhCCCEEEEEEeccCCCC---cCCcccHHHHHHHHHHHHH---HHHHHHHHhc
Confidence 999999999999999999999999953 2345899999988866554 4566666654
No 31
>PLN02584 5'-methylthioadenosine nucleosidase
Probab=99.71 E-value=2.4e-16 Score=151.45 Aligned_cols=193 Identities=13% Similarity=0.189 Sum_probs=137.4
Q ss_pred eEEEEeeCCeEEEEec-ceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCC-CCCCccHHHHHHHHhhccC
Q psy9643 188 QLVFGLINGIPIMCMQ-GRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNP-DYEVGDIMIIKDHINLMGF 262 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~q-gr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~-~~~~Gd~vi~~d~i~~~~~ 262 (412)
.++.|.++|++|++.. ||.-+|-=-.++.+|.+ .+++..++++.||++|.+|++++ ++++||+++++..++++.
T Consensus 45 ~~~~G~~~g~~V~v~~sG~~~~~~i~~IGkvnAA~~~~~li~~~~~~~II~~G~aG~l~~~~l~vGDvVia~~~~~~D~- 123 (249)
T PLN02584 45 VRYSGTHKGLRVHVVCPGKDKALGVDSVGTVPASLVTYAAIQALKPDLIINAGTAGGFKAKGAAIGDVFLATAVANHDR- 123 (249)
T ss_pred eEEEEEECCEEEEEEecCCccccccCccCHHHHHHHHHHHHHhcCCCEEEEEecccCcCcCCCCcCCEEEECeeEeccc-
Confidence 7889999999988775 43322210013555554 47888999999999999999996 799999999999887765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCC-HHHHHHHHHcCCcEEeCc
Q psy9643 263 AGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFET-VAELNMLRICGVDAVGMS 341 (412)
Q Consensus 263 ~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT-~AE~~~~~~~Gad~VgMe 341 (412)
+.+..+.. .++....+ ...++.+. ..+ + ++.|.+ ++|++|.+ ..+.+.++++|+++|+||
T Consensus 124 --~~~~~~~~--~~~~g~~~--~~~~~~l~-------~~~--~--~~~G~i--~SgD~F~~~~~~~~~~~~~~a~~vDME 184 (249)
T PLN02584 124 --RIPIPVFD--KYGVGTRD--AFPTPNLI-------KAL--G--LKEGVL--STGNSLDMTEQDEESIKANDATVKDME 184 (249)
T ss_pred --CCCccccc--ccccCccc--cCCCHHHH-------hhC--C--CeEEEE--EEeCEEeCCHHHHHHHHHcCCcEEech
Confidence 22221100 01111111 01123332 222 3 577865 68999954 444557788999999999
Q ss_pred hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy9643 342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405 (412)
Q Consensus 342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~ 405 (412)
+++.+++|+.+|+|+++|+.|||.+. .+. .+++++.+....++..+.+.+..++.-+..
T Consensus 185 ~aAia~va~~~gvp~~~IR~ISD~~~----~~~-~~~~ef~~~~~~a~~~~~~~l~~~~~~~~~ 243 (249)
T PLN02584 185 GAAVAYVADLLKVPAIFVKAVTDIVD----GDK-PTAEEFLENLSAAAAALQGAVPKVLDFISG 243 (249)
T ss_pred HHHHHHHHHHhCCCEEEEEEEeecCC----CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999874 233 378888888888888888888888876654
No 32
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=99.70 E-value=3.5e-16 Score=149.00 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=121.2
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccH---HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM---PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~---~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
.++.|.++|.+|++..+.. +.++. ..+++..+|++.||++|.||++++++++||+++++... ++. +
T Consensus 47 ~~~~G~~~g~~v~v~~~Gi--------G~~~Aai~~~eLi~~~g~~~iI~~GtaG~l~~~l~~GDvVI~~~a~-~d~--~ 115 (233)
T PRK13374 47 FGFTGTYKGKKVSVMGHGM--------GIPSMVIYVHELIATFGVKNIIRVGSCGATQDDVKLMDVIIAQGAS-TDS--K 115 (233)
T ss_pred EEEEEEECCEEEEEEeCCC--------CHhHHHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCEEEEeeeE-ecC--c
Confidence 6788999999999876432 33333 33677789999999999999999999999999998654 211 0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHH-H-HHHHHHcCCcEEeCch
Q psy9643 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVA-E-LNMLRICGVDAVGMST 342 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~A-E-~~~~~~~Gad~VgMe~ 342 (412)
.+.+ .+.+ .++..+.|+.|.+.+.+.+++.+++ ++.|.. ++|++|-... + .+.++++|+++|+||+
T Consensus 116 ~~~~------~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~--~~~G~i--~T~D~F~~~~~~~~~~~~~~g~~~vEME~ 183 (233)
T PRK13374 116 TNRI------RFSG--HDFAAIADYQLLEKAVETAREKGVP--VKVGNV--FSSDLFYDPDEDAIEAMERFGILGVDMEV 183 (233)
T ss_pred hhhh------ccCC--CCcCCCCCHHHHHHHHHHHHHcCCC--eEEEEE--EEcCcccCCChHHHHHHHHcCCeEEehhH
Confidence 1100 0000 1233456889999999999999998 899965 5899986433 3 4577789999999999
Q ss_pred hHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643 343 VHEVITAHHCGMTVTAFSLITNKCV 367 (412)
Q Consensus 343 ~pEa~~A~~~Gi~~~~i~~VSd~a~ 367 (412)
++.+++|+.+|+|+++|+.|||.+.
T Consensus 184 aAl~~va~~~gip~~~i~~isD~~~ 208 (233)
T PRK13374 184 AGLYGLAAYLGAEALAILTVSDHII 208 (233)
T ss_pred HHHHHHHHHcCCCEEEEEEEEeeec
Confidence 9999999999999999999999985
No 33
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.70 E-value=6.8e-18 Score=174.90 Aligned_cols=150 Identities=23% Similarity=0.337 Sum_probs=99.1
Q ss_pred cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCcc
Q psy9643 89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLS 157 (412)
Q Consensus 89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~ 157 (412)
..+|||+||+++||||||||||+++| |+. |.++.+..+++++ .++|++|..++|+++||++.+++.
T Consensus 2 ~~~k~~~ni~i~Ghvd~GKSTL~g~L---l~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~ 78 (447)
T PLN00043 2 GKEKVHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALW 78 (447)
T ss_pred CCCCceEEEEEEecCCCCHHHHHHHH---HHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEE
Confidence 45899999999999999999999999 776 6666655554432 137899999999999999976554
Q ss_pred cccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCC-eEEEEecceeeeec-CCCCccccH-HHHHHHHcCCCE
Q psy9643 158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLING-IPIMCMQGRFHYYE-GYPLWKCAM-PIRVMKLVGVTH 231 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~qgr~H~ye-g~~~~~v~~-~i~ll~~lGv~~ 231 (412)
.+. + +...++++|+|||.+ +++.|.... ..++++......+| |........ ...+++.+|+++
T Consensus 79 ~~~----------~-~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~ 147 (447)
T PLN00043 79 KFE----------T-TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQ 147 (447)
T ss_pred Eec----------C-CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCc
Confidence 331 1 233578999999977 666665332 22333322211122 111111111 237888999988
Q ss_pred EE-EEeccCCCCCCCCCccHHH
Q psy9643 232 LL-ATNAAGGLNPDYEVGDIMI 252 (412)
Q Consensus 232 II-~~n~~G~l~~~~~~Gd~vi 252 (412)
+| ++||+|..+.++...++-.
T Consensus 148 iIV~vNKmD~~~~~~~~~~~~~ 169 (447)
T PLN00043 148 MICCCNKMDATTPKYSKARYDE 169 (447)
T ss_pred EEEEEEcccCCchhhhHHHHHH
Confidence 55 6899997655555555543
No 34
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria.
Probab=99.68 E-value=1.3e-15 Score=145.00 Aligned_cols=177 Identities=18% Similarity=0.201 Sum_probs=130.7
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP 267 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p 267 (412)
..+.|.++|+++.+.++..-. |+.....-+++..+|++.||.+|.||++++++++||+++.+..+...+. ++
T Consensus 43 ~~~~G~~~g~~v~v~~~G~G~-----~~aai~~~eli~~~~~~~iI~~Gt~G~l~~~~~~GdvvI~~~a~~~~~~---~~ 114 (232)
T TIGR00107 43 LGFTGTYKGKKISVMGHGMGI-----PSISIYVYELIKFYEVKTIIRIGSCGAIRPDVKLRDVIIAMGASTDSKY---NR 114 (232)
T ss_pred EEEEEEECCEEEEEEeCCCCH-----hHHHHHHHHHHHHcCCCEEEEEeccccCCCCCCCCCEEEECceeccCCc---ch
Confidence 567899999999987644321 2211122367777999999999999999999999999999887765431 11
Q ss_pred CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCC-HHH-HHHHHHcCCcEEeCchhHH
Q psy9643 268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFET-VAE-LNMLRICGVDAVGMSTVHE 345 (412)
Q Consensus 268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT-~AE-~~~~~~~Gad~VgMe~~pE 345 (412)
. .+.+ .+.....|++|.+.+.+.+++.+++ ++.|.. .+|+.|-. ..+ .+.++++|+.+|+||+++.
T Consensus 115 ~------~~~~--~~~~~~ad~~l~~~l~~~~~~~~~~--~~~G~~--~S~D~f~~~~~~~~~~~~~~g~~~vEME~aal 182 (232)
T TIGR00107 115 V------RFVE--VDFAAIADFELVELAYQTAKALGLD--FHVGNV--FSADAFYQPDKDVFDLMAKYGILAVEMEAAAL 182 (232)
T ss_pred h------hcCC--CCcCccCCHHHHHHHHHHHHHCCCC--eEEEEE--eEcCcccCCCHHHHHHHHHcCCeEEehhHHHH
Confidence 0 0111 1233456999999999999999988 999965 57888753 333 4677889999999999999
Q ss_pred HHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHH
Q psy9643 346 VITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLR 388 (412)
Q Consensus 346 a~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~ 388 (412)
+++|+.+|+|+++|+.|||.... ....+.++..+..++.
T Consensus 183 ~~va~~~~~~~~~i~~vsd~~~~----~~~~~~~~~~~~~~~~ 221 (232)
T TIGR00107 183 YANAAELGAKALTILTVSDHLVT----HEALTAEERQTTFKDM 221 (232)
T ss_pred HHHHHHcCCcEEEEEEEEeeccc----CCCCChHHHHHHHHHH
Confidence 99999999999999999998842 2334445544444333
No 35
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=99.67 E-value=2.7e-15 Score=143.13 Aligned_cols=157 Identities=19% Similarity=0.214 Sum_probs=121.7
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
..+.|.++|++|.+.++.. +.++.. -+++..+|++.||.+|.+|++++++++||+++++..++..+
T Consensus 46 ~~~~G~~~g~~v~v~~tGi--------G~~~aai~~~eLi~~~~~~~iI~~GtaG~l~~~l~iGDvVI~~~a~~~~~--- 114 (235)
T PRK05819 46 LGFTGTYKGKRVSVMGTGM--------GIPSISIYANELITDYGVKKLIRVGSCGALQEDVKVRDVVIAMGASTDSN--- 114 (235)
T ss_pred EEEEEEECCEEEEEEecCC--------ChhHHHHHHHHHHHhcCCcEEEEEecccCCCCCCCCCCEEEEceeEecCC---
Confidence 5688999999999876443 233332 36777799999999999999999999999999987654222
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCC-HHH-HHHHHHcCCcEEeCch
Q psy9643 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFET-VAE-LNMLRICGVDAVGMST 342 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT-~AE-~~~~~~~Gad~VgMe~ 342 (412)
.+.+ .+.+ ..+....|+.|.+.+.+.+++.+++ ++.|.. .+++.|-. ..+ .+.++++|+.+|+||+
T Consensus 115 ~~~~------~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~--~~~G~v--~T~D~f~~~~~~~~~~~~~~g~~~vEME~ 182 (235)
T PRK05819 115 VNRI------RFKG--HDFAPIADFDLLRKAYDAAKEKGIT--VHVGNV--FSADLFYNPDPEMFDVLEKYGVLGVEMEA 182 (235)
T ss_pred cccc------ccCC--CCcCccCCHHHHHHHHHHHHHCCCc--EEEEEE--EecCcccCCCHHHHHHHHHcCCeEEeccH
Confidence 1110 0111 1122345899999999999999988 899965 57888844 332 4577889999999999
Q ss_pred hHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643 343 VHEVITAHHCGMTVTAFSLITNKCV 367 (412)
Q Consensus 343 ~pEa~~A~~~Gi~~~~i~~VSd~a~ 367 (412)
++.+++|+.+|+|+++|++|||...
T Consensus 183 aAva~va~~~~ip~~~i~~isd~~~ 207 (235)
T PRK05819 183 AALYGLAAKYGVKALTILTVSDHIV 207 (235)
T ss_pred HHHHHHHHHhCCCEEEEEEEeeecc
Confidence 9999999999999999999999985
No 36
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.67 E-value=1.9e-15 Score=138.94 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=142.3
Q ss_pred EEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCC
Q psy9643 190 VFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLL 269 (412)
Q Consensus 190 ~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~ 269 (412)
++|+++|+.|-++-..+.. |+-..|.-.|++.+||+.||.+|+||++++++..+|+|+..........
T Consensus 49 fTGtYKGk~iSvmg~GmGi-----pS~sIY~~ELi~~y~Vk~iIRvGt~Gal~~~v~l~DvVia~~A~tds~~------- 116 (236)
T COG0813 49 FTGTYKGKKISVMGHGMGI-----PSISIYSRELITDYGVKKIIRVGTCGALSEDVKLRDVVIAQGASTDSNV------- 116 (236)
T ss_pred ccceecCcEEEEEEecCCC-----ccHHHHHHHHHHHhCcceEEEEEccccccCCcccceEEEeccccCcchh-------
Confidence 4578889988776322222 5666777789999999999999999999999999999987654433220
Q ss_pred CCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCH-HH-HHHHHHcCCcEEeCchhHHHH
Q psy9643 270 GVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETV-AE-LNMLRICGVDAVGMSTVHEVI 347 (412)
Q Consensus 270 g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~-AE-~~~~~~~Gad~VgMe~~pEa~ 347 (412)
+...|.+ .+.....|++|...+.++|+++|++ +|.|... +-+.|-++ -+ ...|+++|..+|+||+++...
T Consensus 117 --~~~~f~~--~df~~~ad~~Ll~~a~~~A~e~gi~--~hvgnv~--ssD~FY~~~~~~~~~~~~~gvlaVeMEaaalY~ 188 (236)
T COG0813 117 --NRIRFKP--HDFAPIADFELLEKAYETAKELGID--THVGNVF--SSDLFYNPDTEMFDLMAKYGVLAVEMEAAALYA 188 (236)
T ss_pred --hhcccCc--ccccccCCHHHHHHHHHHHHHhCCc--eeeeeee--eeecccCCCHHHHHHHHHhCCcEEEeeHHHHHH
Confidence 1111211 1234567999999999999999999 9999875 45666432 33 457788999999999999999
Q ss_pred HHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9643 348 TAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMV 396 (412)
Q Consensus 348 ~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll 396 (412)
+|.++|.+.++|.+|||.- ..++.++.+|....+.++.+...+.+
T Consensus 189 ~A~~~~~~Al~ilTVSD~l----~t~E~~s~eeRq~tF~~M~~iaLe~~ 233 (236)
T COG0813 189 VAAEYGKKALTILTVSDHL----VTGEETSAEERQNTFNDMIEIALESA 233 (236)
T ss_pred HHHHhCcceEEEEEeeccc----cCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 46788999999988888876554443
No 37
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=99.65 E-value=5.1e-15 Score=142.05 Aligned_cols=154 Identities=15% Similarity=0.251 Sum_probs=118.0
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
.++.|.++|.+|++.++.. +..+.. -+++ .+|++.||++|+||++++++++||+++.+..+.+++
T Consensus 44 ~~~~G~~~g~~v~v~~~Gi--------G~~~aai~~~eLi-~~g~~~iIr~GtaG~l~~~~~~GDiVI~~~a~~~Dg--- 111 (245)
T TIGR01718 44 VTYRGELDGKPVIVCSTGI--------GGPSTAIAVEELA-QLGARTFIRVGTTGAIQPHINVGDVLITTAAVRLDG--- 111 (245)
T ss_pred EEEEEEECCEEEEEEcCCC--------CHHHHHHHHHHHH-HhCCCEEEEeeccccCCCCCCCCCEEEeCceecCCC---
Confidence 5688999999999986443 233332 2455 489999999999999999999999999999988775
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHH-----------H----HHH
Q psy9643 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVA-----------E----LNM 329 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~A-----------E----~~~ 329 (412)
. ++. +.+ ..+....|+++.+.+.++++++|++ ++.|+. .++|+|-+.. | .+.
T Consensus 112 ~-~~~------y~~--~~~p~~~d~~l~~~l~~~~~~~~~~--~~~G~v--~T~D~F~~~~~~~~~~~~~~~~~~~~~~~ 178 (245)
T TIGR01718 112 A-SLH------YAP--LEFPAVADFEVTTALVEAAESIGVR--HHVGVV--ASSDTFYPGQERDTYSGRVVRHFKGSMEA 178 (245)
T ss_pred c-ccc------cCC--CCcCCCCCHHHHHHHHHHHHHcCCC--eEEEEE--EECCcCcCCCCccccccccchhHHHHHHH
Confidence 1 110 000 1111223889999999999999988 999975 5899986421 1 234
Q ss_pred HHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643 330 LRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC 366 (412)
Q Consensus 330 ~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a 366 (412)
|+.+|+++||||+++.+++|+.+|++.++++++.+..
T Consensus 179 ~~~~g~~~vEME~aal~~va~~~gi~~~~v~~~~~~~ 215 (245)
T TIGR01718 179 WQAMGVLNYEMESATLFTLCSSQGLRAGMVAGVIVNR 215 (245)
T ss_pred HHHcCceEehhhHHHHHHHHHHcCCcEEEEEEEEecc
Confidence 5567999999999999999999999999999988775
No 38
>PRK07115 AMP nucleosidase; Provisional
Probab=99.65 E-value=2.5e-15 Score=144.93 Aligned_cols=150 Identities=19% Similarity=0.178 Sum_probs=113.6
Q ss_pred CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCC
Q psy9643 196 GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDR 275 (412)
Q Consensus 196 g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~ 275 (412)
|.+|.+.++..-. |+... .+..+..+|++.||.+|+||++++++++||+|+++..+..++ .++. +
T Consensus 59 g~~vsv~~~GIG~-----psAai-~~eeL~~~g~~~iIr~GtaGaL~~~l~~GDiVI~t~avr~dg---ts~~------Y 123 (258)
T PRK07115 59 AEGITIINFGMGS-----PNAAT-IMDLLSALNPKAVLFLGKCGGLKSKYQVGDYFLPIAAIRGEG---TSDD------Y 123 (258)
T ss_pred CCEEEEEeCCCCH-----HHHHH-HHHHHHHcCCCEEEEEecccCcCCCCCCCCEEEEEEEEEcCC---cccc------c
Confidence 7777777643321 12111 235667789999999999999999999999999998877654 1110 0
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCc-c-CCHHHH-HHHHHcCCcEEeCchhHHHHHHHHc
Q psy9643 276 FGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPN-F-ETVAEL-NMLRICGVDAVGMSTVHEVITAHHC 352 (412)
Q Consensus 276 ~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~-f-eT~AE~-~~~~~~Gad~VgMe~~pEa~~A~~~ 352 (412)
.........|+.|.+.+.+++++.|++ ++.|+. .++++ | ++..+. +.|+++|+++|+||+++.+++|+.+
T Consensus 124 ---~p~~~pa~~d~~l~~~l~~~~~~~~~~--~~~G~v--~StD~ff~~~~~~~~~~~~~~g~~avEME~AAl~~va~~~ 196 (258)
T PRK07115 124 ---FPPEVPALPNFVLQKAVSSIIRDKGLD--YWTGTV--YTTNRRFWEHDKEFKEYLYETRAQAIDMETATLFAAGFAN 196 (258)
T ss_pred ---cCCccCcCCCHHHHHHHHHHHHHcCCC--eEEEEE--EecCCCccCCcHHHHHHHHHcCCeEEehhHHHHHHHHHHc
Confidence 001222334678999999999999998 999976 46775 4 455554 4677899999999999999999999
Q ss_pred CCcEEEEEeeeccCC
Q psy9643 353 GMTVTAFSLITNKCV 367 (412)
Q Consensus 353 Gi~~~~i~~VSd~a~ 367 (412)
|+|+++|+++||...
T Consensus 197 gv~~~~i~~isD~~~ 211 (258)
T PRK07115 197 NIPTGALLLISDLPL 211 (258)
T ss_pred CCcEEEEEEEecccC
Confidence 999999999999983
No 39
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.64 E-value=1.2e-16 Score=165.67 Aligned_cols=152 Identities=23% Similarity=0.359 Sum_probs=98.1
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCccc
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLST 158 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~~ 158 (412)
.+|+++||+++||||||||||+++| ++. |.++.+..+++++ .++|++|..++|+++|+++.+++..
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~L---l~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~ 79 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHL---IYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWK 79 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHH---HHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEE
Confidence 4789999999999999999999999 665 6666555555433 2468999999999999999665533
Q ss_pred ccccccCceeeecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeec-CCCCc-cccHHHHHHHHcCCCEE
Q psy9643 159 IADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYE-GYPLW-KCAMPIRVMKLVGVTHL 232 (412)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~ye-g~~~~-~v~~~i~ll~~lGv~~I 232 (412)
+ .+ +-..++++|+|||.+ +++.|... +..++++......+| |.... +..-.+.+++.+|++++
T Consensus 80 ~----------~~-~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~i 148 (446)
T PTZ00141 80 F----------ET-PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQM 148 (446)
T ss_pred E----------cc-CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeE
Confidence 2 22 223578999999987 56555432 222333221111121 11111 11112378999999986
Q ss_pred -EEEeccCCCCCCCCCccHHHHHH
Q psy9643 233 -LATNAAGGLNPDYEVGDIMIIKD 255 (412)
Q Consensus 233 -I~~n~~G~l~~~~~~Gd~vi~~d 255 (412)
+++|++|....++...++-.+.+
T Consensus 149 iv~vNKmD~~~~~~~~~~~~~i~~ 172 (446)
T PTZ00141 149 IVCINKMDDKTVNYSQERYDEIKK 172 (446)
T ss_pred EEEEEccccccchhhHHHHHHHHH
Confidence 57999995444455556554433
No 40
>TIGR03664 fut_nucase futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.
Probab=99.63 E-value=2.2e-15 Score=142.57 Aligned_cols=166 Identities=17% Similarity=0.204 Sum_probs=121.0
Q ss_pred EEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCC
Q psy9643 190 VFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNN 266 (412)
Q Consensus 190 ~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~ 266 (412)
+.|.++|.++++..+. ++.++.. .+++..++++.||++|.+|++++++++||+++.+..++++... .+
T Consensus 22 ~~G~~~g~~v~v~~tG--------iG~v~aA~~~~~~i~~~~~~~ii~~G~aG~l~~~~~~GDvvv~~~~~~~d~g~-~~ 92 (222)
T TIGR03664 22 YAGSVGGAGFDVLVTG--------VGPVNAAAATARLLARAPYELVINAGIAGGFPGSAAVGDLVVADSEIAADLGA-ET 92 (222)
T ss_pred cceeeCCeeEEEEECC--------cCHHHHHHHHHHHHHhCCCCEEEEEEEcccCCCCCCCcCEEEeeeEEEcccCc-cC
Confidence 6688889888776532 2344443 3577889999999999999999999999999999877665310 01
Q ss_pred CCCCCCCCCCCC-CCC----C--CcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHH-H-HHHHHcCCcE
Q psy9643 267 PLLGVNEDRFGP-RFP----P--MNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE-L-NMLRICGVDA 337 (412)
Q Consensus 267 pl~g~~~~~~g~-~~~----~--~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE-~-~~~~~~Gad~ 337 (412)
+.........+. .++ . ...+.|+.|.+.+.+.++..+++ ++.|.+ ++|++|.+.++ . +..+++|+++
T Consensus 93 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~L~~~~~~~~~~~~~~--~~~G~i--~T~d~~~~~~~~~~~l~~~~~a~a 168 (222)
T TIGR03664 93 PEGFLPLEALGFPQLPGGGSSYFNRIPLDPDLVERAVQLLRALGLP--VARGPF--LTVSTVSGTAARAEALARRFGAVA 168 (222)
T ss_pred CCCccccccCCCCcCCCCCccccccccCCHHHHHHHHHHhhccCcc--eeEeee--eeecceeCCHHHHHHHHHhcchHH
Confidence 110000000010 000 0 12456999999999999998888 899965 57888865444 3 3567789999
Q ss_pred EeCchhHHHHHHHHcCCcEEEEEeeeccCCC
Q psy9643 338 VGMSTVHEVITAHHCGMTVTAFSLITNKCVT 368 (412)
Q Consensus 338 VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~ 368 (412)
|+||+++.+++|+.+|+|+++||.|||.+..
T Consensus 169 veMEsaava~va~~~~vP~~~IR~ISD~~~~ 199 (222)
T TIGR03664 169 ENMEGFAVALAALRYGVPFLELRGISNLVGP 199 (222)
T ss_pred HHhhHHHHHHHHHHhCCCEEEEEeeccCCCC
Confidence 9999999999999999999999999999953
No 41
>PRK07077 hypothetical protein; Provisional
Probab=99.61 E-value=8.1e-15 Score=139.46 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=115.6
Q ss_pred HHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHH
Q psy9643 222 RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301 (412)
Q Consensus 222 ~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~ 301 (412)
.++...|++.||+++.+|+++|++++||+|+.+..++.. + .+++|+.|.+.+.+++..
T Consensus 47 ~~~~~~~~~~vIs~G~AGgL~p~l~vGDvVva~~v~~~~----------------g------~~~~d~~l~~~l~~~l~~ 104 (238)
T PRK07077 47 AAFDARGCAGIVSFGVAGGLDPDLAPGDLVVATAVDAPF----------------G------RVDTDARWSARLAAALEL 104 (238)
T ss_pred HHHHhcCCCEEEEEEeccccCCCCCCCcEEEEeeeecCC----------------C------cCcCCHHHHHHHHHHHHh
Confidence 455578999999999999999999999999999765321 1 234688899988887765
Q ss_pred cC--CCcceeeceEEEEecCccCCHH-HHHH-HHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCC--------
Q psy9643 302 LN--MSSIVKEGVYSVIGGPNFETVA-ELNM-LRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTD-------- 369 (412)
Q Consensus 302 ~g--~~~~~~~Gvy~~~~GP~feT~A-E~~~-~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~-------- 369 (412)
.. .+ ++.|.+ ++|++|.+.. +.+. .+++|+.+|+||+++.+++|+++|+||++||.|||.+...
T Consensus 105 ~~~~~~--v~~G~i--~T~D~~v~~~~~k~~L~~~~gA~aVDMEsaAvA~va~~~giPf~viR~ISD~a~~~LP~~~~~~ 180 (238)
T PRK07077 105 TPVARR--VVRGGL--AGVEAPVVGAAAKAALHRATGALAVDMESHIAAAFAAARGLPFAACRVIVDPAWRTLPAAATAG 180 (238)
T ss_pred ccCCCc--eEEEEE--EecCeeecCHHHHHHHHHhCCCEEEehhHHHHHHHHHHcCCCEEEEEEEEeccCccCchhHHhh
Confidence 43 34 888965 5899997544 4444 4568999999999999999999999999999999998511
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9643 370 YDDHAEANHEEVIQAGKLRGPMIKSMVT 397 (412)
Q Consensus 370 ~~~~~~~s~~ev~~~~~~~~~~~~~ll~ 397 (412)
-+.+..+++..++....+....+..|+.
T Consensus 181 ~~~~g~~~~~~~l~~l~r~P~~i~~Ll~ 208 (238)
T PRK07077 181 LRDDGSTDILPILRGLARQPSQLGALLQ 208 (238)
T ss_pred cCCCcCcCHHHHHHHHHhChHHHHHHHH
Confidence 0145678888888776666655555543
No 42
>PRK11178 uridine phosphorylase; Provisional
Probab=99.60 E-value=4.5e-14 Score=135.94 Aligned_cols=155 Identities=15% Similarity=0.249 Sum_probs=118.4
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHH--HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP--IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN 265 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~--i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~ 265 (412)
.++.|.++|.+|++.++.. +.++.. +..+..+|++.||++|.+|++++++++||+|+++..+++++ .
T Consensus 49 ~~~~G~~~g~~v~v~~~Gi--------G~~~Aa~~~~eLi~~g~~~iI~~GtaG~l~~~l~~GDvVI~~~a~~~Dg---~ 117 (251)
T PRK11178 49 TSWRAELDGKPVIVCSTGI--------GGPSTSIAVEELAQLGVRTFLRIGTTGAIQPHINVGDVLVTTASVRLDG---A 117 (251)
T ss_pred EEEEEEEcCEEEEEEecCC--------CHHHHHHHHHHHHHcCCCEEEEEeccccCCCCCCCCCEEEecceecCCC---C
Confidence 6888999999999986443 333332 23344589999999999999999999999999999998876 2
Q ss_pred CCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCH----------------HHHHH
Q psy9643 266 NPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETV----------------AELNM 329 (412)
Q Consensus 266 ~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~----------------AE~~~ 329 (412)
+.. +.+. ......|.++...+.+.+++++++ ++.|+. .+|++|-+. ...+.
T Consensus 118 s~~-------y~~~--~~p~~~~~~~~~~L~~~~~~~~~~--~~~G~i--~S~D~Fy~~~~~~~~~~~~i~~~~~~~~~~ 184 (251)
T PRK11178 118 SLH-------FAPL--EFPAVADFECTTALVEAAKSIGAT--THVGVT--ASSDTFYPGQERYDTYSGRVVRRFKGSMEE 184 (251)
T ss_pred ccc-------cCCC--CcCCCCCHHHHHHHHHHHHHcCCC--EEEEEE--eecCcccCCCCccccccccchhhHHHHHHH
Confidence 211 1111 111223778888888888888988 899965 589998531 22345
Q ss_pred HHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643 330 LRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC 366 (412)
Q Consensus 330 ~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a 366 (412)
|++.|+.+|+||+++.+++|+.+|++.++++.+....
T Consensus 185 ~~~~g~~avEMEsAAla~va~~~gv~a~~v~~~~~~r 221 (251)
T PRK11178 185 WQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNR 221 (251)
T ss_pred HHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEEEecc
Confidence 6677999999999999999999999999998887765
No 43
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.60 E-value=8.8e-16 Score=154.40 Aligned_cols=133 Identities=25% Similarity=0.455 Sum_probs=96.1
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD 172 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~ 172 (412)
+..||+||+|||||||||+.+|+++- |. +..-++..+.+||....|+++|||+ +.....+.|.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQS--Gt-----f~~~e~v~ERvMDSnDlEkERGITI----------LaKnTav~~~ 66 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQS--GT-----FREREEVAERVMDSNDLEKERGITI----------LAKNTAVNYN 66 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhc--cc-----cccccchhhhhcCccchhhhcCcEE----------EeccceeecC
Confidence 47899999999999999999994332 22 3333455667899999999999999 2344567777
Q ss_pred CCCCccccCCCCCce-----eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCC
Q psy9643 173 TIPYFPVSTVPGHKG-----QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEV 247 (412)
Q Consensus 173 ~~~~~~i~d~pGH~~-----~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~ 247 (412)
+. .++++|+|||+| +.+.+.++|.-+++ -+||| ++.+..|...-+-.+|.+.|+++||.+- |...|
T Consensus 67 ~~-~INIvDTPGHADFGGEVERvl~MVDgvlLlV-----DA~EG-pMPQTrFVlkKAl~~gL~PIVVvNKiDr--p~Arp 137 (603)
T COG1217 67 GT-RINIVDTPGHADFGGEVERVLSMVDGVLLLV-----DASEG-PMPQTRFVLKKALALGLKPIVVINKIDR--PDARP 137 (603)
T ss_pred Ce-EEEEecCCCcCCccchhhhhhhhcceEEEEE-----EcccC-CCCchhhhHHHHHHcCCCcEEEEeCCCC--CCCCH
Confidence 64 579999999998 56666777766665 34444 3333444447777899999999999974 45555
Q ss_pred ccHH
Q psy9643 248 GDIM 251 (412)
Q Consensus 248 Gd~v 251 (412)
-.+|
T Consensus 138 ~~Vv 141 (603)
T COG1217 138 DEVV 141 (603)
T ss_pred HHHH
Confidence 5443
No 44
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulfur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria. This enzyme is widely distributed in bacteria.
Probab=99.59 E-value=9.2e-15 Score=136.30 Aligned_cols=164 Identities=13% Similarity=0.056 Sum_probs=117.9
Q ss_pred CccccHH---HHHHHHc-----CCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcc
Q psy9643 214 LWKCAMP---IRVMKLV-----GVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNK 285 (412)
Q Consensus 214 ~~~v~~~---i~ll~~l-----Gv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~ 285 (412)
.++||++ .+++..+ +++.||++|.+|++ ++++||+++.+++++++. +.++|..+ +|. .+.+..
T Consensus 38 IGKVNAA~~~~~lI~~f~~~~~~pd~VIN~GvAG~~--~~~igDIVi~t~~~~hDv--d~t~~gy~----~Gq-iP~~~~ 108 (212)
T TIGR01705 38 VGPVEAAIRVGAELAGLDAADALPDLVVSLGSAGSR--TLEQTEIYQAVSVSYRDI--DASAFGFE----KGA-TPFLDL 108 (212)
T ss_pred ccHHHHHHHHHHHHHhhhhccCCCCEEEEecccCCC--CCccCCEEEEeeEEEcCc--CccccCCc----ccc-CCCCCC
Confidence 3566664 3677764 89999999999995 578999999999999885 34444211 121 122223
Q ss_pred cccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeecc
Q psy9643 286 AYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365 (412)
Q Consensus 286 ~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~ 365 (412)
+.+..|.+.+.+.+.. . ..+.|.+ ++|++| +.+++++|+||+++.+++|+.+|+||++||.|||.
T Consensus 109 ~~~~~l~~~~~~~~~~--~--~~~~g~~--vSgd~f---------~~~~a~~vdME~aAia~vc~~~~vpf~~iR~ISD~ 173 (212)
T TIGR01705 109 PAEAALPFRIPDIAEA--R--LSTGGAI--ISGAAY---------DAIAADMVDMETFACLRACQLFDVPLIGLRGISDG 173 (212)
T ss_pred CchhhHHHHHHHHHhc--c--CcceeEE--EECcch---------hhCCceEEechHHHHHHHHHHcCCCEEEEEEEecC
Confidence 5677888777766543 1 2556754 689887 35699999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy9643 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQ 407 (412)
Q Consensus 366 a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~~ 407 (412)
+++ +....+++++++.+.+.+ .+++.++++.+....
T Consensus 174 a~~---~~~~~df~~f~~~aa~~s---a~~v~~ll~~~~~~~ 209 (212)
T TIGR01705 174 AAD---LNHVDDWTAYLDIIDEKL---ADAVDRLCQAIEDGL 209 (212)
T ss_pred CCC---ccchhhHHHHHHHHHHHH---HHHHHHHHHHHhcCc
Confidence 742 223345888877766654 467888888876543
No 45
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.59 E-value=9.7e-16 Score=149.78 Aligned_cols=139 Identities=22% Similarity=0.334 Sum_probs=102.9
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH------------HHHHHhhhcCCCCceeEeeCcCcc
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS------------IAKFLLDSISIRPKIGIICGSGLS 157 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~------------~~~~i~~~~~~e~~~GIi~GsGl~ 157 (412)
.|+.+++.++||||+|||||+||| ||+ ..+.+-....++. -.+.+.|-+..||+-||||
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRL---L~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITI----- 74 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRL---LYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITI----- 74 (431)
T ss_pred cccceeEEEeccccCcchhhhhhh---hhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceE-----
Confidence 467899999999999999999999 776 2222222222221 1378889999999999999
Q ss_pred cccccccCceeeecC-CCCCccccCCCCCce---eEEEEeeCC-eEEEEe--------cceeeeecCCCCccccHHHHHH
Q psy9643 158 TIADSITDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLING-IPIMCM--------QGRFHYYEGYPLWKCAMPIRVM 224 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll 224 (412)
+.....|+ +.+.|-+.|+|||.. ||.+|..-. ..|+++ |+|-|. .++
T Consensus 75 -------DVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs-------------~I~ 134 (431)
T COG2895 75 -------DVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHS-------------FIA 134 (431)
T ss_pred -------EEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHH-------------HHH
Confidence 44444455 677899999999976 899997543 333333 899999 699
Q ss_pred HHcCCCEEEE-EeccCCCCCCCCCccHHH-HHHHHhh
Q psy9643 225 KLVGVTHLLA-TNAAGGLNPDYEVGDIMI-IKDHINL 259 (412)
Q Consensus 225 ~~lGv~~II~-~n~~G~l~~~~~~Gd~vi-~~d~i~~ 259 (412)
..||++++++ +||++.++ |....|-. ..|+..|
T Consensus 135 sLLGIrhvvvAVNKmDLvd--y~e~~F~~I~~dy~~f 169 (431)
T COG2895 135 SLLGIRHVVVAVNKMDLVD--YSEEVFEAIVADYLAF 169 (431)
T ss_pred HHhCCcEEEEEEeeecccc--cCHHHHHHHHHHHHHH
Confidence 9999999887 99999987 55555543 4566655
No 46
>PRK08236 hypothetical protein; Provisional
Probab=99.59 E-value=1.4e-14 Score=135.96 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=114.5
Q ss_pred HHHHHHc--CCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHH
Q psy9643 221 IRVMKLV--GVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDI 298 (412)
Q Consensus 221 i~ll~~l--Gv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~ 298 (412)
.+++..+ +++.||++|.+|++++++++||+|+.++.++++... ..|. |.. ......|....++.|+.|.+.+.+.
T Consensus 44 ~~li~~~~~~p~~vI~~GvAGgl~~~l~vGDvVva~~~~~~D~g~-~~~~-g~~-~~~~~~~~~~~~~~d~~l~~~~~~~ 120 (212)
T PRK08236 44 ARALAAAAAPYDLVVSAGIAGGFPGKAEVGSLVVADEIIAADLGA-ETPD-GFL-PVDELGFGTTTIQVDPALVRQLTEA 120 (212)
T ss_pred HHHHHHhccCCCEEEEEecccCCCCCCCCCCEEEEeeEEeccCCC-CCcc-CcC-ccccccCCcceecCCHHHHHHHHHH
Confidence 3677778 999999999999999999999999999988776310 0111 100 0001122233466799999988888
Q ss_pred HHHcCCCcceeeceEEEEecCccCC-HHHHHHH-HHc-CCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCC
Q psy9643 299 ARDLNMSSIVKEGVYSVIGGPNFET-VAELNML-RIC-GVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAE 375 (412)
Q Consensus 299 a~~~g~~~~~~~Gvy~~~~GP~feT-~AE~~~~-~~~-Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~ 375 (412)
+...+++ .+.|.+ ++|++|.. .++.+.+ +++ ++.+++||+++.+++|+.+|+||+.||.|||.+..+ ..+.
T Consensus 121 l~~~~~~--~~~G~i--~Tgd~~v~~~~~~~~l~~~~~~a~~vdMEgaAvA~vc~~~~vPf~~iR~ISD~~~~r--d~~~ 194 (212)
T PRK08236 121 LLAAALG--ATAGPV--LTVSTVTGTAETAAALAARHPDAVAEAMEGFGVAEAAAAAGLPVLELRAISNPVGPR--DRAA 194 (212)
T ss_pred HHhcCCC--eEEeeE--EecCeEeCCHHHHHHHHHHCCCceeehhHHHHHHHHHHHhCCCEEEEEEecCCCCcc--chhc
Confidence 8777777 888965 68999974 5555544 568 899999999999999999999999999999999542 3445
Q ss_pred CCHHHHHHH
Q psy9643 376 ANHEEVIQA 384 (412)
Q Consensus 376 ~s~~ev~~~ 384 (412)
+....-++.
T Consensus 195 W~~~~A~~~ 203 (212)
T PRK08236 195 WRIKEALAA 203 (212)
T ss_pred cCHHHHHHH
Confidence 665554333
No 47
>TIGR01721 AMN-like AMP nucleosidase, putative. The sequences in the clade represented by this model are most closely related to the AMP nucleosidase found in TIGR01717. These sequences are found only in Chlamydia and Porphyromonas and differ sufficiently from the characterized AMP nucleosidase to put some doubt on assignment of this name.
Probab=99.58 E-value=1.9e-14 Score=138.88 Aligned_cols=129 Identities=18% Similarity=0.185 Sum_probs=103.0
Q ss_pred HHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCC
Q psy9643 225 KLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNM 304 (412)
Q Consensus 225 ~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~ 304 (412)
..+|++.+|.+|+||++++++++||+++++..+..++ .+ . .+. + +......|++|.+.+.++++++|+
T Consensus 83 ~~~G~k~iIriGtcG~L~~~i~iGDiVI~~aAir~dg---ts-~-----~Y~-p--~~~p~~~d~~l~~~l~~a~~~~g~ 150 (266)
T TIGR01721 83 FLPHPKAAIMLGMCGGLRSHYQVGDYFVPVASIRGEG---TS-D-----AYF-P--PEVPALANFVVQKAITSALENKGK 150 (266)
T ss_pred HhcCCCEEEEEEeccCCCCCCCCCCEEEEcceEeccC---ch-h-----hcC-C--cccCCCCCHHHHHHHHHHHHHcCC
Confidence 5679999999999999999999999999999886655 11 1 000 1 122334578899999999999999
Q ss_pred CcceeeceEEEEecCccCCHHHH-HHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643 305 SSIVKEGVYSVIGGPNFETVAEL-NMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV 367 (412)
Q Consensus 305 ~~~~~~Gvy~~~~GP~feT~AE~-~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~ 367 (412)
+ ++.|+.+..++.-+++..+. +.|++.|+.+|+||+++.+++|+.+|+|+++|++|||...
T Consensus 151 ~--~~~G~v~TtD~~F~e~~~~~~~~~~~~ga~aVEMEsAAL~ava~~~~vp~~~il~VSD~~~ 212 (266)
T TIGR01721 151 D--YHIGITHTTNIRFWEFNKKFRDKLYETKAQGVEMECATLFTAGYRRNLPXGALLLISDLPL 212 (266)
T ss_pred C--eEEEEEEcCCCcEeCCcHHHHHHHHHcCCEEEehhHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 8 89998653333334666554 5678889999999999999999999999999999999984
No 48
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=99.57 E-value=2.1e-14 Score=134.08 Aligned_cols=160 Identities=13% Similarity=0.132 Sum_probs=105.8
Q ss_pred ccccHH---HHHHHHcC-----CCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy9643 215 WKCAMP---IRVMKLVG-----VTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA 286 (412)
Q Consensus 215 ~~v~~~---i~ll~~lG-----v~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~ 286 (412)
++||.+ .+++..++ ++.||++|.+|+ +++++||+|+.++.++++. +.+++... .| ..+...
T Consensus 39 GKVnAA~~t~~lI~~f~~~~~~pd~IIn~GvAGg--~~l~igDvViat~~~~hD~--d~~~~g~~----~g--~~p~~~- 107 (212)
T PRK06026 39 GPVEAAVNLTAALARLKAAGDLPDLVVSLGSAGS--AKLEQTEVYQVSSVSYRDM--DASPLGFE----KG--VTPFLD- 107 (212)
T ss_pred eHHHHHHHHHHHHHHhhccCCCCCEEEEecccCC--CCCccCCEEEEeeEEEcCC--CCcccCCc----cc--ccCCCC-
Confidence 556664 37888888 999999999999 5699999999999998875 33444211 11 111111
Q ss_pred ccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643 287 YNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC 366 (412)
Q Consensus 287 ~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a 366 (412)
.+.+.+...+........ ..+.|.+ ++|++| ++++++||+||+++.+++|+.+|+||++||.|||.+
T Consensus 108 -~~~~~~l~~~~~~~~~~~-i~tgg~~--vsgd~f---------~~~~a~~vdMEgaAvAqVc~~~~vPfl~iR~ISD~a 174 (212)
T PRK06026 108 -LPATVELPLRIPGIPEAS-LSTGGNI--VSGAAY---------DAIDADMVDMETYAVLRACQAFGVPLIGLRGISDGA 174 (212)
T ss_pred -CchhHHHHHHHhhhhccc-ceecCEE--eeCchh---------hhcCCeEEechHHHHHHHHHHcCCCEEEEEEEecCC
Confidence 123333333332211111 1233432 345443 568999999999999999999999999999999988
Q ss_pred CCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy9643 367 VTDYDDHAE-ANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405 (412)
Q Consensus 367 ~~~~~~~~~-~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~ 405 (412)
+ .++. .++++++..+.+++. +++.++++.+..
T Consensus 175 ~----~~a~~~df~~f~~~aa~~sa---~~v~~~~~~~~~ 207 (212)
T PRK06026 175 A----ELKHVGDWTEYLHVIDEKLA---GAVDRLERALED 207 (212)
T ss_pred C----cccchhhHHHHHHHHHHHHH---HHHHHHHHHHhc
Confidence 4 3334 358888777766654 566666665543
No 49
>PLN03127 Elongation factor Tu; Provisional
Probab=99.57 E-value=7.5e-16 Score=159.67 Aligned_cols=123 Identities=36% Similarity=0.526 Sum_probs=85.2
Q ss_pred ccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHH-HhhhcCCCCceeEeeCcCcccccccc
Q psy9643 86 QVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKF-LLDSISIRPKIGIICGSGLSTIADSI 163 (412)
Q Consensus 86 ~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~-i~~~~~~e~~~GIi~GsGl~~~~~~~ 163 (412)
.+++++|+|+||+++||||||||||+++|++.+.+ |.. ....| .+|+.++|+++|+|+.++.
T Consensus 53 ~~~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~---------~~~~~~~~D~~~~E~~rGiTi~~~~------- 116 (447)
T PLN03127 53 ATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKA---------KAVAFDEIDKAPEEKARGITIATAH------- 116 (447)
T ss_pred hhhhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcc---------cceeeccccCChhHhhcCceeeeeE-------
Confidence 46888999999999999999999999999654322 111 01112 5888899999999996543
Q ss_pred cCceeeecC-CCCCccccCCCCCce---eEEEEeeCC-eEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCC
Q psy9643 164 TDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLING-IPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVT 230 (412)
Q Consensus 164 ~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~ 230 (412)
..|+ +...+.++|+|||.+ +++.|.... ..++++ |+++|+ .+++.+|++
T Consensus 117 -----~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l-------------~~~~~~gip 178 (447)
T PLN03127 117 -----VEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHI-------------LLARQVGVP 178 (447)
T ss_pred -----EEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHH-------------HHHHHcCCC
Confidence 2333 234578999999976 455543322 222222 344444 789999999
Q ss_pred EE-EEEeccCCCC
Q psy9643 231 HL-LATNAAGGLN 242 (412)
Q Consensus 231 ~I-I~~n~~G~l~ 242 (412)
.+ +++||+|.++
T Consensus 179 ~iIvviNKiDlv~ 191 (447)
T PLN03127 179 SLVVFLNKVDVVD 191 (447)
T ss_pred eEEEEEEeeccCC
Confidence 75 5699999865
No 50
>KOG0459|consensus
Probab=99.56 E-value=1.3e-15 Score=150.84 Aligned_cols=138 Identities=28% Similarity=0.349 Sum_probs=110.2
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHH----------HHHhhhcCCCCceeEeeCcCcccc
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIA----------KFLLDSISIRPKIGIICGSGLSTI 159 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~----------~~i~~~~~~e~~~GIi~GsGl~~~ 159 (412)
.|.|+|++++||||+||||+.|+| ++. |.++.|+.+++++.+ .|.+|...++|+.|-+.+-|...|
T Consensus 76 pk~hvn~vfighVdagkstigg~i---l~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNI---LFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred CCCCceEEEEEEEeccccccCCee---EEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 577999999999999999999999 776 899999998876554 588999999999999997766433
Q ss_pred cccccCceeeecCCCCCccccCCCCCce---eEEEEeeCCeE-EEEe---------------cceeeeecCCCCccccHH
Q psy9643 160 ADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLINGIP-IMCM---------------QGRFHYYEGYPLWKCAMP 220 (412)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g~~-vv~~---------------qgr~H~yeg~~~~~v~~~ 220 (412)
+ .+..+|++.|+|||+. +|+-|..++.. +++. |+|+|+
T Consensus 153 --------E---te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha------------ 209 (501)
T KOG0459|consen 153 --------E---TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHA------------ 209 (501)
T ss_pred --------E---ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHH------------
Confidence 1 1445799999999977 88988876543 3332 678887
Q ss_pred HHHHHHcCCCEEEE-EeccCCCCCCCCCccHHHHHH
Q psy9643 221 IRVMKLVGVTHLLA-TNAAGGLNPDYEVGDIMIIKD 255 (412)
Q Consensus 221 i~ll~~lGv~~II~-~n~~G~l~~~~~~Gd~vi~~d 255 (412)
.+++.+||+++|+ +|+++--.-+|..-++-.+.+
T Consensus 210 -~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~ 244 (501)
T KOG0459|consen 210 -MLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKE 244 (501)
T ss_pred -HHHHhhccceEEEEEEeccCCccCcchhhHHHHHH
Confidence 8999999999886 899986555677776665543
No 51
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.54 E-value=2.1e-15 Score=157.46 Aligned_cols=127 Identities=23% Similarity=0.332 Sum_probs=91.4
Q ss_pred ccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH------------HHHHHhhhcCCCCceeEeeCc
Q psy9643 88 YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS------------IAKFLLDSISIRPKIGIICGS 154 (412)
Q Consensus 88 ~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~------------~~~~i~~~~~~e~~~GIi~Gs 154 (412)
.+++|+++||+++||||||||||+++| |+. |.+..+..+++++ .++|++|..++|+++||++.+
T Consensus 21 ~~~~~~~~~i~iiGhvdaGKSTL~~~L---L~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~ 97 (474)
T PRK05124 21 AQQHKSLLRFLTCGSVDDGKSTLIGRL---LHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDV 97 (474)
T ss_pred hccccCceEEEEECCCCCChHHHHHHH---HHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEe
Confidence 346799999999999999999999999 776 6666655555542 257899999999999999977
Q ss_pred CcccccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCCe--EEEEe--------cceeeeecCCCCccccHHH
Q psy9643 155 GLSTIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLINGI--PIMCM--------QGRFHYYEGYPLWKCAMPI 221 (412)
Q Consensus 155 Gl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g~--~vv~~--------qgr~H~yeg~~~~~v~~~i 221 (412)
++..+ .+ +-..+.++|+|||.+ +++.|. .+. .++++ |++.|+
T Consensus 98 ~~~~~----------~~-~~~~i~~iDTPGh~~f~~~~~~~l-~~aD~allVVDa~~G~~~qt~~~~------------- 152 (474)
T PRK05124 98 AYRYF----------ST-EKRKFIIADTPGHEQYTRNMATGA-STCDLAILLIDARKGVLDQTRRHS------------- 152 (474)
T ss_pred eEEEe----------cc-CCcEEEEEECCCcHHHHHHHHHHH-hhCCEEEEEEECCCCccccchHHH-------------
Confidence 65433 11 223578899999975 444443 222 22232 344555
Q ss_pred HHHHHcCCCEEE-EEeccCCCC
Q psy9643 222 RVMKLVGVTHLL-ATNAAGGLN 242 (412)
Q Consensus 222 ~ll~~lGv~~II-~~n~~G~l~ 242 (412)
.++..+|++.+| ++||+|.++
T Consensus 153 ~l~~~lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 153 FIATLLGIKHLVVAVNKMDLVD 174 (474)
T ss_pred HHHHHhCCCceEEEEEeecccc
Confidence 788899988755 799999875
No 52
>TIGR01719 euk_UDPppase uridine phosphorylase. This model represents a clade of mainly eucaryotic uridine phosphorylases. Genes from human and mouse have been characterized. This enzyme is a member of the PHP/UDP subfamily (pfam01048) and is closely related to the bacterial uridine (TIGR01718) and inosine (TIGR00107) phosphorylase equivalogs. In addition to the eukaryotes, a gene from Mycobacterium leprae is included in this equivalog and may have resulted from lateral gene transfer.
Probab=99.54 E-value=2.2e-13 Score=133.56 Aligned_cols=158 Identities=13% Similarity=0.166 Sum_probs=112.1
Q ss_pred EeeCCeEEEEecceeeeecCCCCccccHHHHHHHH---c--CCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCC
Q psy9643 192 GLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL---V--GVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNN 266 (412)
Q Consensus 192 G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~---l--Gv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~ 266 (412)
|.++|.+|+++.+..-. |+...+...+++. + +.+.||.+|+||++ ++++||+|+.+..++++. ..
T Consensus 73 g~ykg~~V~v~stGIG~-----psaaI~~~ELi~~~~~~~~~~~~IIRiGtaG~l--~i~iGDvVIat~a~~~d~---~~ 142 (287)
T TIGR01719 73 AMYKVGPVLCVSHGMGI-----PSISIMLHELIKLLYYARCKNPTFIRIGTSGGI--GVPPGTVVVSSEAVDACL---KP 142 (287)
T ss_pred EEEccEEEEEEecCCCc-----chHHHHHHHHHHhhhhcCCCCceEEEEeccccC--CCCCCCEEEEchhhhccc---Cc
Confidence 78899999998643321 2222223345543 3 44589999999999 699999999999887653 11
Q ss_pred CCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHH--cCCCcceeeceEEEEecCccCCH-------------HH----H
Q psy9643 267 PLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD--LNMSSIVKEGVYSVIGGPNFETV-------------AE----L 327 (412)
Q Consensus 267 pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~--~g~~~~~~~Gvy~~~~GP~feT~-------------AE----~ 327 (412)
.+ +. -.++. ...+....|++|.+.+.+++++ .|++ ++.|.. ++|++|-+. .+ .
T Consensus 143 ~~-~~--~~~~~-~~~~~~~aD~~L~~~l~~aa~~~~~~~~--~~~G~i--~S~D~Fy~~q~r~~~~~~~~~~~~~~~~i 214 (287)
T TIGR01719 143 EY-EQ--IVLGK-RVIRPTQLDEALVQELLLCGAEGLDEFT--TVSGNT--MCTDDFYEGQGRLDGAFCEYTEKDKMAYL 214 (287)
T ss_pred hH-hh--cccCC-CcccCCCCCHHHHHHHHHHHHhhcCCCC--eEEEEE--ccCCcccCCCCcccccccccchhhhHHHH
Confidence 11 00 00110 0122455799999999999999 7887 899964 689999652 22 2
Q ss_pred HHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEE-eeeccCC
Q psy9643 328 NMLRICGVDAVGMSTVHEVITAHHCGMTVTAFS-LITNKCV 367 (412)
Q Consensus 328 ~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~-~VSd~a~ 367 (412)
+.+..+|+.+||||+++.+++|+.+|+|+++|+ +++|...
T Consensus 215 ~~~~~~gv~~vEMEsaal~~va~~~gv~a~~I~~~i~~r~~ 255 (287)
T TIGR01719 215 RKLYALGVRNIEMESSMFAAMTSRAGFKAAVVCVTLLNRLE 255 (287)
T ss_pred HHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEeeecccc
Confidence 334456999999999999999999999999998 7778763
No 53
>KOG0462|consensus
Probab=99.53 E-value=4.8e-15 Score=151.64 Aligned_cols=231 Identities=19% Similarity=0.216 Sum_probs=135.7
Q ss_pred ccCCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCce
Q psy9643 88 YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRH 167 (412)
Q Consensus 88 ~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~ 167 (412)
.+.++ ..|++||+|||||||||+++|+.+. |.++.... .+.++|++..||+||||+-+ ..+
T Consensus 55 ~P~~~-iRNfsIIAHVDHGKSTLaDrLLe~t--g~i~~~~~------q~q~LDkl~vERERGITIka----------Qta 115 (650)
T KOG0462|consen 55 DPVEN-IRNFSIIAHVDHGKSTLADRLLELT--GTIDNNIG------QEQVLDKLQVERERGITIKA----------QTA 115 (650)
T ss_pred Cchhh-ccceEEEEEecCCcchHHHHHHHHh--CCCCCCCc------hhhhhhhhhhhhhcCcEEEe----------eee
Confidence 34455 7899999999999999999995432 33333211 23578999999999999944 334
Q ss_pred eeecCC--CCCccccCCCCCce-----eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCC
Q psy9643 168 IFPYDT--IPYFPVSTVPGHKG-----QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG 240 (412)
Q Consensus 168 ~~~~~~--~~~~~i~d~pGH~~-----~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~ 240 (412)
.+.|.. ..-.+++|+|||.| ....+..+|+.+|+- +-||.. .++.++.+++.+.|...|.++||+|.
T Consensus 116 sify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVD-----A~qGvq-AQT~anf~lAfe~~L~iIpVlNKIDl 189 (650)
T KOG0462|consen 116 SIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVD-----ASQGVQ-AQTVANFYLAFEAGLAIIPVLNKIDL 189 (650)
T ss_pred EEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEE-----cCcCch-HHHHHHHHHHHHcCCeEEEeeeccCC
Confidence 444543 22358999999988 445556778776663 122222 23345679999999999999999974
Q ss_pred CCCCCCCccHHH--HHHHHhhccCCCCCCC-----CCCCCCCC----CCCCCCCcccccHHHHHHHHHHHHHcCCCc---
Q psy9643 241 LNPDYEVGDIMI--IKDHINLMGFAGNNPL-----LGVNEDRF----GPRFPPMNKAYNKQLRAATLDIARDLNMSS--- 306 (412)
Q Consensus 241 l~~~~~~Gd~vi--~~d~i~~~~~~~~~pl-----~g~~~~~~----g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~--- 306 (412)
= ...| +.|+ +.+.+.... ...+ .|.+.... -.+.++....-|.+||.++-+..-..=.+.
T Consensus 190 p--~adp-e~V~~q~~~lF~~~~---~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~ 263 (650)
T KOG0462|consen 190 P--SADP-ERVENQLFELFDIPP---AEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIAL 263 (650)
T ss_pred C--CCCH-HHHHHHHHHHhcCCc---cceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEE
Confidence 2 2223 2222 222222221 2111 12221110 123455556678999999988765421110
Q ss_pred -ceeeceE-------EEEecCccCCH-------HHH--HHHH--HcCCcEEeCchhHHHHHH
Q psy9643 307 -IVKEGVY-------SVIGGPNFETV-------AEL--NMLR--ICGVDAVGMSTVHEVITA 349 (412)
Q Consensus 307 -~~~~Gvy-------~~~~GP~feT~-------AE~--~~~~--~~Gad~VgMe~~pEa~~A 349 (412)
.+..|++ .+.+|..|+.. .+. -.+. +-|-.+.+|-...|+++.
T Consensus 264 vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IG 325 (650)
T KOG0462|consen 264 VRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIG 325 (650)
T ss_pred EEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEeccccccccccc
Confidence 1233322 23455555431 111 1222 347778888888888774
No 54
>PRK12736 elongation factor Tu; Reviewed
Probab=99.52 E-value=2.4e-15 Score=153.88 Aligned_cols=125 Identities=38% Similarity=0.514 Sum_probs=85.5
Q ss_pred hccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc
Q psy9643 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI 163 (412)
Q Consensus 85 ~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~ 163 (412)
|+++.++|+|+||+++||||||||||+++|++...+ |.. .....+++|+.+.|+++|+|+.++.
T Consensus 3 ~~~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~--------~~~~~~~~d~~~~E~~rg~T~~~~~------- 67 (394)
T PRK12736 3 KEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLN--------QAKDYDSIDAAPEEKERGITINTAH------- 67 (394)
T ss_pred hhhhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccc--------cccchhhhcCCHHHHhcCccEEEEe-------
Confidence 567888999999999999999999999999654322 110 1111236899999999999996543
Q ss_pred cCceeeecC-CCCCccccCCCCCce---eEEEEeeCC-eEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCC
Q psy9643 164 TDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLING-IPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVT 230 (412)
Q Consensus 164 ~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~ 230 (412)
..|. +...+.++|+|||.+ +++.|.... ..++++ |++.|+ .++..+|++
T Consensus 68 -----~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~-------------~~~~~~g~~ 129 (394)
T PRK12736 68 -----VEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-------------LLARQVGVP 129 (394)
T ss_pred -----eEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHH-------------HHHHHcCCC
Confidence 2332 234578999999976 454443221 222222 334444 788899999
Q ss_pred EE-EEEeccCCCC
Q psy9643 231 HL-LATNAAGGLN 242 (412)
Q Consensus 231 ~I-I~~n~~G~l~ 242 (412)
++ +++||+|.++
T Consensus 130 ~~IvviNK~D~~~ 142 (394)
T PRK12736 130 YLVVFLNKVDLVD 142 (394)
T ss_pred EEEEEEEecCCcc
Confidence 75 5699999764
No 55
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.52 E-value=2.1e-15 Score=154.27 Aligned_cols=126 Identities=35% Similarity=0.491 Sum_probs=86.2
Q ss_pred hccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc
Q psy9643 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI 163 (412)
Q Consensus 85 ~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~ 163 (412)
++.+..+|+++||+++||||||||||+++|++.+.+ |.. .....|.+|+.++|+++|+|+.+..
T Consensus 3 ~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~--------~~~~~~~~d~~~~E~~rG~Ti~~~~------- 67 (394)
T TIGR00485 3 KEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGA--------AARAYDQIDNAPEEKARGITINTAH------- 67 (394)
T ss_pred hhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcc--------cccccccccCCHHHHhcCcceeeEE-------
Confidence 567888999999999999999999999999654332 211 1112357899999999999995432
Q ss_pred cCceeeecC-CCCCccccCCCCCce---eEEEEee--CCeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCC
Q psy9643 164 TDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLI--NGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVT 230 (412)
Q Consensus 164 ~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~--~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~ 230 (412)
..|. +...+.++|+|||.+ +++.|.. ++.-+|+- |++.|+ .++..+|++
T Consensus 68 -----~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l-------------~~~~~~gi~ 129 (394)
T TIGR00485 68 -----VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHI-------------LLARQVGVP 129 (394)
T ss_pred -----EEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-------------HHHHHcCCC
Confidence 3333 223578999999975 4444432 22222221 234444 678889999
Q ss_pred EEE-EEeccCCCCC
Q psy9643 231 HLL-ATNAAGGLNP 243 (412)
Q Consensus 231 ~II-~~n~~G~l~~ 243 (412)
.+| ++||+|.+++
T Consensus 130 ~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 130 YIVVFLNKCDMVDD 143 (394)
T ss_pred EEEEEEEecccCCH
Confidence 985 6999998753
No 56
>PRK12735 elongation factor Tu; Reviewed
Probab=99.52 E-value=3.1e-15 Score=153.08 Aligned_cols=125 Identities=35% Similarity=0.480 Sum_probs=85.8
Q ss_pred hccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc
Q psy9643 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI 163 (412)
Q Consensus 85 ~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~ 163 (412)
|+++.++||++||+++||||||||||+++|++.+.+ |.. .....+.+|+++.|+++|+|+.++..
T Consensus 3 ~~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~--------~~~~~~~~d~~~~E~~rGiT~~~~~~------ 68 (396)
T PRK12735 3 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGG--------EAKAYDQIDNAPEEKARGITINTSHV------ 68 (396)
T ss_pred hhhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCc--------ccchhhhccCChhHHhcCceEEEeee------
Confidence 689999999999999999999999999999553322 111 01122468899999999999965432
Q ss_pred cCceeeecC-CCCCccccCCCCCce---eEEEEeeCC-eEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCC
Q psy9643 164 TDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLING-IPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVT 230 (412)
Q Consensus 164 ~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~ 230 (412)
.|+ +...+.++|+|||.+ +++.|.... ..++++ |++.|+ .++..+|++
T Consensus 69 ------~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l-------------~~~~~~gi~ 129 (396)
T PRK12735 69 ------EYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI-------------LLARQVGVP 129 (396)
T ss_pred ------EEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHH-------------HHHHHcCCC
Confidence 232 223578999999975 455543322 222222 223333 678889999
Q ss_pred EEE-EEeccCCCC
Q psy9643 231 HLL-ATNAAGGLN 242 (412)
Q Consensus 231 ~II-~~n~~G~l~ 242 (412)
.+| ++||+|.++
T Consensus 130 ~iivvvNK~Dl~~ 142 (396)
T PRK12735 130 YIVVFLNKCDMVD 142 (396)
T ss_pred eEEEEEEecCCcc
Confidence 886 599999864
No 57
>PRK08292 AMP nucleosidase; Provisional
Probab=99.51 E-value=3.7e-13 Score=138.15 Aligned_cols=155 Identities=10% Similarity=0.085 Sum_probs=110.6
Q ss_pred EEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCC
Q psy9643 191 FGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLG 270 (412)
Q Consensus 191 ~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g 270 (412)
....+|..|+++++.. -|+.....+..+..+|++.+|++|.||++++++++||+|+.+..+.+++..+.
T Consensus 270 l~~~~G~~VtvvssGI------GpsnAA~ateeLa~lgpd~iIriGtAGgL~~~lkiGDvVIA~aavr~DGt~d~----- 338 (489)
T PRK08292 270 LIRADGQGITLVNIGV------GPSNAKTITDHLAVLRPHAWLMIGHCGGLRNSQRIGDYVLAHAYLRDDHVLDA----- 338 (489)
T ss_pred eeccCCceEEEEEcCC------CHHHHHHHHHHHHHcCCCEEEEEEehhcCCCCCCCCCEEEECceEeCCccccc-----
Confidence 3456788888876332 12222223466778999999999999999999999999999999887752111
Q ss_pred CCCCCCCCCCCCCcccccHHHHHHHHHHHHHc--------CCCcceeeceEEEEecCccCC---HHH-HHHHHHcCCcEE
Q psy9643 271 VNEDRFGPRFPPMNKAYNKQLRAATLDIARDL--------NMSSIVKEGVYSVIGGPNFET---VAE-LNMLRICGVDAV 338 (412)
Q Consensus 271 ~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~--------g~~~~~~~Gvy~~~~GP~feT---~AE-~~~~~~~Gad~V 338 (412)
.+ +.. ...+.+..+...+.+++++. |.+ ++.|++ ++|++|.. ..+ .+.|++.|+.+|
T Consensus 339 ----~~-p~e--vPa~a~~el~~aL~~aa~ev~~~~g~elg~~--~h~G~V--~SgD~F~~e~~~~~l~~~~~~~gAlAV 407 (489)
T PRK08292 339 ----VL-PPW--IPIPAIAEVQVALEDAVAEVTGLPGEELKRR--MRTGTV--VTTDDRNWELRYSASALRFNQSRAVAL 407 (489)
T ss_pred ----cc-ccc--cCcCCcHHHHHHHHHHHHHHhhhcccccCCc--eEEEEE--EecCcCCCcCchHHHHHHhhhcCCEEE
Confidence 01 011 12233455666666655443 555 899975 58999842 122 345566699999
Q ss_pred eCchhHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643 339 GMSTVHEVITAHHCGMTVTAFSLITNKCV 367 (412)
Q Consensus 339 gMe~~pEa~~A~~~Gi~~~~i~~VSd~a~ 367 (412)
+||+++.+++|+.+|+|+++|++|||...
T Consensus 408 EMESAALa~va~~~gVP~gaIr~VSD~~~ 436 (489)
T PRK08292 408 DMESATIAANGYRFRVPYGTLLCVSDKPL 436 (489)
T ss_pred ehhHHHHHHHHHHhCCCEEEEEEEEecCC
Confidence 99999999999999999999999999984
No 58
>PLN03126 Elongation factor Tu; Provisional
Probab=99.50 E-value=3.4e-15 Score=155.74 Aligned_cols=133 Identities=32% Similarity=0.468 Sum_probs=87.2
Q ss_pred cchhhhhcc---ccCCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcC
Q psy9643 79 RRGYAEKQV---YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSG 155 (412)
Q Consensus 79 ~~~~~~~~~---~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsG 155 (412)
.+.|-+++. +.++|+++||+++||||||||||+++|+..+ +.+..+..++ ...+|.+++|+++||++.++
T Consensus 63 ~~~~~~~~~~~~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~--~~i~~~~~~~-----~~~~D~~~~Er~rGiTi~~~ 135 (478)
T PLN03126 63 RRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMAL--ASMGGSAPKK-----YDEIDAAPEERARGITINTA 135 (478)
T ss_pred chhhhHHHHHhhhhccCCeeEEEEECCCCCCHHHHHHHHHHhh--hhhccccccc-----cccccCChhHHhCCeeEEEE
Confidence 344444443 4558999999999999999999999994322 3222111111 12578889999999999554
Q ss_pred cccccccccCceeeecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEe--------cceeeeecCCCCccccHHHHH
Q psy9643 156 LSTIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM--------QGRFHYYEGYPLWKCAMPIRV 223 (412)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~--------qgr~H~yeg~~~~~v~~~i~l 223 (412)
...+ .+ +-..+.++|+|||.+ +++.|... ...++++ |+++|+ .+
T Consensus 136 ~~~~----------~~-~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~-------------~~ 191 (478)
T PLN03126 136 TVEY----------ET-ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI-------------LL 191 (478)
T ss_pred EEEE----------ec-CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-------------HH
Confidence 3222 12 233678999999976 45444322 1222222 456666 78
Q ss_pred HHHcCCCEEE-EEeccCCCC
Q psy9643 224 MKLVGVTHLL-ATNAAGGLN 242 (412)
Q Consensus 224 l~~lGv~~II-~~n~~G~l~ 242 (412)
+..+|++++| ++||+|.++
T Consensus 192 ~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 192 AKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHcCCCeEEEEEecccccC
Confidence 8999999765 699999865
No 59
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=6e-15 Score=142.71 Aligned_cols=137 Identities=25% Similarity=0.372 Sum_probs=97.7
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccc--ccccCceee
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIA--DSITDRHIF 169 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~--~~~~~~~~~ 169 (412)
-+.+|||++||||||||||+.+|+++... +..+|-+|||++-.|..+.. .+-+-...-
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~--------------------~hseElkRgitIkLGYAd~~i~kC~~c~~~~ 67 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTD--------------------RHSEELKRGITIKLGYADAKIYKCPECYRPE 67 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeee--------------------chhHHHhcCcEEEeccccCceEeCCCCCCCc
Confidence 45899999999999999999999886432 33456789999988887642 110000000
Q ss_pred ecC-------------CCCCccccCCCCCce---eEEEEe--eCCeEEEEe--------cceeeeecCCCCccccHHHHH
Q psy9643 170 PYD-------------TIPYFPVSTVPGHKG---QLVFGL--INGIPIMCM--------QGRFHYYEGYPLWKCAMPIRV 223 (412)
Q Consensus 170 ~~~-------------~~~~~~i~d~pGH~~---~l~~G~--~~g~~vv~~--------qgr~H~yeg~~~~~v~~~i~l 223 (412)
.|. -.+++.++|+|||.- .|..|. .+|+-+|+. |+++|+ .+
T Consensus 68 ~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl-------------~A 134 (415)
T COG5257 68 CYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL-------------MA 134 (415)
T ss_pred ccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH-------------HH
Confidence 111 123456789999954 788885 466665553 799999 89
Q ss_pred HHHcCCCEEEE-EeccCCCCCCCCCccHHHHHHHHhhcc
Q psy9643 224 MKLVGVTHLLA-TNAAGGLNPDYEVGDIMIIKDHINLMG 261 (412)
Q Consensus 224 l~~lGv~~II~-~n~~G~l~~~~~~Gd~vi~~d~i~~~~ 261 (412)
+.-+|++.||. .||++.+.++-..-..-.++.|+.-+.
T Consensus 135 leIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~ 173 (415)
T COG5257 135 LEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKGTV 173 (415)
T ss_pred HhhhccceEEEEecccceecHHHHHHHHHHHHHHhcccc
Confidence 99999999775 799999988766666777777776554
No 60
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.49 E-value=2.4e-14 Score=147.80 Aligned_cols=136 Identities=23% Similarity=0.436 Sum_probs=88.8
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCccc
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLST 158 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~~ 158 (412)
.+|+++||+++||+|||||||+++| ++. |.+.....+++++ .++|++|+.++|+++|+|+.++...
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~L---l~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~ 78 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRL---LYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKK 78 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHH---HHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEE
Confidence 4789999999999999999999999 666 6666555555542 2479999999999999999765543
Q ss_pred ccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCC-eEEEEecceeeeecCCCCccccHHHHHHHHcCCCE-EE
Q psy9643 159 IADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLING-IPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTH-LL 233 (412)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~-II 233 (412)
+ .+ +...+.++|+|||.+ +++.+.... ..++++..... .|..+.. ...+.+++.+|++. ++
T Consensus 79 ~----------~~-~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~--~~~~~~~-~~~~~~~~~~~~~~iiv 144 (425)
T PRK12317 79 F----------ET-DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA--GGVMPQT-REHVFLARTLGINQLIV 144 (425)
T ss_pred E----------ec-CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC--CCCCcch-HHHHHHHHHcCCCeEEE
Confidence 2 12 223578899999975 344442221 22333322211 0111111 11235677899865 55
Q ss_pred EEeccCCCC
Q psy9643 234 ATNAAGGLN 242 (412)
Q Consensus 234 ~~n~~G~l~ 242 (412)
++||+|..+
T Consensus 145 viNK~Dl~~ 153 (425)
T PRK12317 145 AINKMDAVN 153 (425)
T ss_pred EEEcccccc
Confidence 799999765
No 61
>TIGR01717 AMP-nucleosdse AMP nucleosidase. This model represents the AMP nucleosidase from proteobacteria but also including a sequence from Corynebacterium, a gram-positive organism. The species from E. coli has been most well studied.
Probab=99.48 E-value=7.5e-13 Score=135.54 Aligned_cols=157 Identities=11% Similarity=0.090 Sum_probs=116.0
Q ss_pred EEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCC
Q psy9643 189 LVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPL 268 (412)
Q Consensus 189 l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl 268 (412)
...+..+|..|+++++.. -|+........+..+|++.+|++|.||++++++++||+|+.+..+.+++..+
T Consensus 256 Y~l~~~~g~~ItvvstGI------GpsnAaaiteeLa~lgp~~iI~iGscGgL~~~ikiGDlVIataAvR~DGtsd---- 325 (477)
T TIGR01717 256 YHLITADGDGITLVNIGV------GPSNAKTITDHLAVLRPHAWLMIGHCGGLRESQRIGDYVLAHAYLREDHVLD---- 325 (477)
T ss_pred EEEEeeCCceEEEEECCC------CHHHHHHHHHHHHHcCCCEEEEEEccccCCCCCCCCCEEEEeeEEecCcchh----
Confidence 334567788888876432 1222222336677899999999999999999999999999999887765210
Q ss_pred CCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHc--------CCCcceeeceEEEEecCccC----CHHHHHHHHHcCCc
Q psy9643 269 LGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDL--------NMSSIVKEGVYSVIGGPNFE----TVAELNMLRICGVD 336 (412)
Q Consensus 269 ~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~--------g~~~~~~~Gvy~~~~GP~fe----T~AE~~~~~~~Gad 336 (412)
..+. +....+.+..+...+.+++++. +.+ ++.|++ .++++|. +....+.++..|+.
T Consensus 326 -----~ylp---~~~Papa~~~l~~aL~~Aa~~~~g~~g~el~~~--~h~G~V--~StD~F~~el~~~~~~~~l~~~gAl 393 (477)
T TIGR01717 326 -----AVLP---PDIPIPAIAEVQRALEDAVAEVTGRPGEELKRR--LRTGTV--LTTDDRNWELRYSASALRLNLSRAI 393 (477)
T ss_pred -----hhcc---cccCCCCcHHHHHHHHHHHHHhhcccccccCCc--eEEEEE--EecCcCcccCCCHHHHHHHHhCCCE
Confidence 0111 1123456788888888887663 334 899976 5789874 33444566777999
Q ss_pred EEeCchhHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643 337 AVGMSTVHEVITAHHCGMTVTAFSLITNKCV 367 (412)
Q Consensus 337 ~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~ 367 (412)
+|+||+++.+++|+.+|+|+++|++|||...
T Consensus 394 AVEMESAALaava~~~gVP~gaLr~VSD~~l 424 (477)
T TIGR01717 394 AVDMESATIAAQGYRFRVPYGTLLCVSDKPL 424 (477)
T ss_pred EEehhHHHHHHHHHHhCCCEEEEEEEEEcCC
Confidence 9999999999999999999999999999984
No 62
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.48 E-value=7.4e-15 Score=150.77 Aligned_cols=121 Identities=23% Similarity=0.359 Sum_probs=86.5
Q ss_pred eeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH------------HHHHHhhhcCCCCceeEeeCcCcccccc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS------------IAKFLLDSISIRPKIGIICGSGLSTIAD 161 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~------------~~~~i~~~~~~e~~~GIi~GsGl~~~~~ 161 (412)
+||+++||||||||||+++| |+. |.++.+..+++++ .++|++|+.++|+++|+++.+++..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~l---l~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~-- 75 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRL---LHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYF-- 75 (406)
T ss_pred CeEEEECCCCCCchhhhHHH---HHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEE--
Confidence 58999999999999999999 776 7676665655542 23689999999999999997765433
Q ss_pred cccCceeeecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCC
Q psy9643 162 SITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGV 229 (412)
Q Consensus 162 ~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv 229 (412)
.+. -..+.++|+|||.+ ++..|... +..++++ |++.|+ .++..+|+
T Consensus 76 --------~~~-~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-------------~~~~~~~~ 133 (406)
T TIGR02034 76 --------STD-KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-------------YIASLLGI 133 (406)
T ss_pred --------ccC-CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-------------HHHHHcCC
Confidence 122 23578999999975 44444322 1222232 345555 78889999
Q ss_pred CEEE-EEeccCCCC
Q psy9643 230 THLL-ATNAAGGLN 242 (412)
Q Consensus 230 ~~II-~~n~~G~l~ 242 (412)
+.+| ++||+|.++
T Consensus 134 ~~iivviNK~D~~~ 147 (406)
T TIGR02034 134 RHVVLAVNKMDLVD 147 (406)
T ss_pred CcEEEEEEeccccc
Confidence 8765 699999875
No 63
>PRK00049 elongation factor Tu; Reviewed
Probab=99.48 E-value=2.1e-14 Score=146.96 Aligned_cols=133 Identities=32% Similarity=0.431 Sum_probs=85.1
Q ss_pred hccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc
Q psy9643 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI 163 (412)
Q Consensus 85 ~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~ 163 (412)
|+++.++|+++||+++||||||||||+++|++.+.+ +.... ..+ +.+|+.+.|+++|+|+.++.
T Consensus 3 ~~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~-------~~~-~~~d~~~~E~~rg~Ti~~~~------- 67 (396)
T PRK00049 3 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEA-------KAY-DQIDKAPEEKARGITINTAH------- 67 (396)
T ss_pred hhhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcc-------cch-hhccCChHHHhcCeEEeeeE-------
Confidence 678999999999999999999999999999543322 11100 011 26888999999999996543
Q ss_pred cCceeeecC-CCCCccccCCCCCce---eEEEEeeCC-eEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEE-EEec
Q psy9643 164 TDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLING-IPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLL-ATNA 237 (412)
Q Consensus 164 ~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II-~~n~ 237 (412)
..|. +...+.++|+|||.+ ++..|.... ..++++... +|..+.. .-.+.+++.+|++.+| ++||
T Consensus 68 -----~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~----~g~~~qt-~~~~~~~~~~g~p~iiVvvNK 137 (396)
T PRK00049 68 -----VEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAA----DGPMPQT-REHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred -----EEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECC----CCCchHH-HHHHHHHHHcCCCEEEEEEee
Confidence 2232 223578899999965 444443222 222222211 1111110 0012678889999875 6999
Q ss_pred cCCCC
Q psy9643 238 AGGLN 242 (412)
Q Consensus 238 ~G~l~ 242 (412)
+|.++
T Consensus 138 ~D~~~ 142 (396)
T PRK00049 138 CDMVD 142 (396)
T ss_pred cCCcc
Confidence 99864
No 64
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.46 E-value=1.3e-14 Score=150.51 Aligned_cols=124 Identities=22% Similarity=0.264 Sum_probs=79.9
Q ss_pred cccCCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccccc-cc-
Q psy9643 87 VYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADS-IT- 164 (412)
Q Consensus 87 ~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~-~~- 164 (412)
++.+ .+++||+++||||||||||+++|+++. .++.++|.++|||+..|+..+-.. .+
T Consensus 28 ~~~~-~~~~~ig~~GHVDhGKTtLv~aLtg~~--------------------~~r~~~E~~rGiTi~lGfa~~~~~~~~~ 86 (460)
T PTZ00327 28 VISR-QATINIGTIGHVAHGKSTVVKALSGVK--------------------TVRFKREKVRNITIKLGYANAKIYKCPK 86 (460)
T ss_pred HccC-CCcEEEEEEccCCCCHHHHHHHHhCCC--------------------cccchhhHHhCCchhccccccccccCcc
Confidence 3344 459999999999999999999997542 135567889999999888754100 00
Q ss_pred --Cc-eeeec-----------------CCCCCccccCCCCCce---eEEEEeeCC-eEEEEe---------cceeeeecC
Q psy9643 165 --DR-HIFPY-----------------DTIPYFPVSTVPGHKG---QLVFGLING-IPIMCM---------QGRFHYYEG 211 (412)
Q Consensus 165 --~~-~~~~~-----------------~~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~---------qgr~H~yeg 211 (412)
.+ ...++ .....+.++|+|||.+ +++.|.... ..++++ |+++|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl--- 163 (460)
T PTZ00327 87 CPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL--- 163 (460)
T ss_pred cCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH---
Confidence 00 00000 1123578999999976 555554321 122222 345555
Q ss_pred CCCccccHHHHHHHHcCCCEE-EEEeccCCCCCC
Q psy9643 212 YPLWKCAMPIRVMKLVGVTHL-LATNAAGGLNPD 244 (412)
Q Consensus 212 ~~~~~v~~~i~ll~~lGv~~I-I~~n~~G~l~~~ 244 (412)
.++..+|++.+ +++||+|.++++
T Consensus 164 ----------~i~~~lgi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 164 ----------AAVEIMKLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ----------HHHHHcCCCcEEEEEecccccCHH
Confidence 78889999975 579999987543
No 65
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.46 E-value=5.5e-14 Score=145.21 Aligned_cols=138 Identities=21% Similarity=0.346 Sum_probs=88.0
Q ss_pred cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHH----------HHHHhhhcCCCCceeEeeCcCcc
Q psy9643 89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSI----------AKFLLDSISIRPKIGIICGSGLS 157 (412)
Q Consensus 89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~----------~~~i~~~~~~e~~~GIi~GsGl~ 157 (412)
..+|+++||+++||||||||||+++| ++. |.++.+..+++++. ++|++|+.+.|+++|+++..+..
T Consensus 2 ~~~~~~~~v~i~Ghvd~GKSTL~~~l---l~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~ 78 (426)
T TIGR00483 2 AKEKEHINVAFIGHVDHGKSTTVGHL---LYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHW 78 (426)
T ss_pred CCCCceeEEEEEeccCCcHHHHHHHH---HHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEE
Confidence 35899999999999999999999999 665 65665555544322 47999999999999999976654
Q ss_pred cccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCC-eEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEE
Q psy9643 158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLING-IPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLL 233 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II 233 (412)
.+ .+. ...+.+.|+|||.+ +++.+..+. ..++++......++ ..+. ....+.+++.+|++.+|
T Consensus 79 ~~----------~~~-~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~-~~~~-t~~~~~~~~~~~~~~iI 145 (426)
T TIGR00483 79 KF----------ETD-KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE-VQPQ-TREHAFLARTLGINQLI 145 (426)
T ss_pred EE----------ccC-CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc-cCCc-hHHHHHHHHHcCCCeEE
Confidence 32 222 23568899999975 344442222 22233221111010 0111 11123567778887655
Q ss_pred -EEeccCCCC
Q psy9643 234 -ATNAAGGLN 242 (412)
Q Consensus 234 -~~n~~G~l~ 242 (412)
+.||+|..+
T Consensus 146 VviNK~Dl~~ 155 (426)
T TIGR00483 146 VAINKMDSVN 155 (426)
T ss_pred EEEEChhccC
Confidence 699999864
No 66
>CHL00071 tufA elongation factor Tu
Probab=99.45 E-value=2.1e-14 Score=147.51 Aligned_cols=126 Identities=34% Similarity=0.497 Sum_probs=84.4
Q ss_pred hccccCCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccccccc
Q psy9643 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSIT 164 (412)
Q Consensus 85 ~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~ 164 (412)
++++.++|+++||+++||+|||||||+++|++.+ +.+...... .++ .+|+++.|+++|+++.+...
T Consensus 3 ~~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~--~~~~~~~~~----~~~-~~d~~~~e~~rg~T~~~~~~------- 68 (409)
T CHL00071 3 REKFERKKPHVNIGTIGHVDHGKTTLTAAITMTL--AAKGGAKAK----KYD-EIDSAPEEKARGITINTAHV------- 68 (409)
T ss_pred hhhccCCCCeEEEEEECCCCCCHHHHHHHHHHHh--Ccccccccc----ccc-cccCChhhhcCCEeEEccEE-------
Confidence 5688899999999999999999999999995432 222111110 011 47888899999999966432
Q ss_pred CceeeecC-CCCCccccCCCCCce---eEEEEeeC-CeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCCE
Q psy9643 165 DRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTH 231 (412)
Q Consensus 165 ~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~ 231 (412)
.|. +...+.++|+|||.+ +++.|... ...++++ |++.|+ .++..+|+++
T Consensus 69 -----~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~-------------~~~~~~g~~~ 130 (409)
T CHL00071 69 -----EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHI-------------LLAKQVGVPN 130 (409)
T ss_pred -----EEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHH-------------HHHHHcCCCE
Confidence 222 234578899999975 33333221 1222232 344454 7888999996
Q ss_pred E-EEEeccCCCC
Q psy9643 232 L-LATNAAGGLN 242 (412)
Q Consensus 232 I-I~~n~~G~l~ 242 (412)
+ +++||+|.++
T Consensus 131 iIvvvNK~D~~~ 142 (409)
T CHL00071 131 IVVFLNKEDQVD 142 (409)
T ss_pred EEEEEEccCCCC
Confidence 6 5699999875
No 67
>KOG0052|consensus
Probab=99.41 E-value=1.3e-13 Score=137.28 Aligned_cols=135 Identities=27% Similarity=0.400 Sum_probs=102.9
Q ss_pred cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHH----------HHHHhhhcCCCCceeEeeCcCcc
Q psy9643 89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSI----------AKFLLDSISIRPKIGIICGSGLS 157 (412)
Q Consensus 89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~----------~~~i~~~~~~e~~~GIi~GsGl~ 157 (412)
..+|+|+||++|||||+||||+++ |+ |.++.+..+++++. ++|.+|++..++++||++...++
T Consensus 2 ~~~~~~~ni~~i~h~~s~~stt~~------~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~ 75 (391)
T KOG0052|consen 2 GKEKIHINIVVIGHVDSGKSTTTG------YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALW 75 (391)
T ss_pred CCcccccceEEEEeeeeeeeEEEe------eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEee
Confidence 468999999999999999999998 33 66777777776553 36999999999999988866665
Q ss_pred cccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCCe-EEEEe---------------cceeeeecCCCCcccc
Q psy9643 158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLINGI-PIMCM---------------QGRFHYYEGYPLWKCA 218 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g~-~vv~~---------------qgr~H~yeg~~~~~v~ 218 (412)
.+. . ...+.+++|+|||.+ +|++|+.+.. .|++. |+|+|+
T Consensus 76 ~~~-----t------~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~eha---------- 134 (391)
T KOG0052|consen 76 KFE-----T------SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA---------- 134 (391)
T ss_pred ccc-----c------eeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhh----------
Confidence 431 1 122457899999988 8999976533 33322 577777
Q ss_pred HHHHHHHHcCCCEEEE-EeccCCCCCCCCCccHHHH
Q psy9643 219 MPIRVMKLVGVTHLLA-TNAAGGLNPDYEVGDIMII 253 (412)
Q Consensus 219 ~~i~ll~~lGv~~II~-~n~~G~l~~~~~~Gd~vi~ 253 (412)
.++..|||+++|+ +|++++..+.+..-..-.+
T Consensus 135 ---lla~tlgv~qliv~v~k~D~~~~~~s~~r~~ei 167 (391)
T KOG0052|consen 135 ---LLAFTLGVKQLIVGVNKMDSTEPPYSEARYEEI 167 (391)
T ss_pred ---hhhccccceeeeEEeecccccCCCccccchhhh
Confidence 8999999999888 8999998887766554433
No 68
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=4.6e-14 Score=152.16 Aligned_cols=132 Identities=24% Similarity=0.299 Sum_probs=87.2
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY 171 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~ 171 (412)
..+||+|+||+|||||||+.+| |+. |.+.. ..++...+ -.+|.+..|++||||+.|.- ..+.|
T Consensus 9 ~~RNigI~aHidaGKTTltE~l---L~~tG~i~k--~G~v~~g~-~~~D~~e~EqeRGITI~saa----------~s~~~ 72 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERI---LFYTGIISK--IGEVHDGA-ATMDWMEQEQERGITITSAA----------TTLFW 72 (697)
T ss_pred cceEEEEEeccCCChHHHHHHH---HHHcCCcCC--CccccCCC-ccCCCcHHHHhcCCEEeeee----------eEEEE
Confidence 3899999999999999999999 665 54432 23333322 24788888999999996633 22333
Q ss_pred CCCCCccccCCCCCce-----eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCC
Q psy9643 172 DTIPYFPVSTVPGHKG-----QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYE 246 (412)
Q Consensus 172 ~~~~~~~i~d~pGH~~-----~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~ 246 (412)
+.-..++++|+|||.| ..-...++|+-+|+. +-||..|.+- ...+.+...+++.++++||+|-+..++.
T Consensus 73 ~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvd-----aveGV~~QTE-tv~rqa~~~~vp~i~fiNKmDR~~a~~~ 146 (697)
T COG0480 73 KGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVD-----AVEGVEPQTE-TVWRQADKYGVPRILFVNKMDRLGADFY 146 (697)
T ss_pred cCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEE-----CCCCeeecHH-HHHHHHhhcCCCeEEEEECccccccChh
Confidence 3224579999999987 112223566665553 1112222211 1127889999999999999998776543
No 69
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.40 E-value=2.8e-14 Score=131.01 Aligned_cols=122 Identities=26% Similarity=0.392 Sum_probs=80.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeee
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFP 170 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~ 170 (412)
|+++||+++||+|||||||+++| ++. +........+ ......+..+.|+++|+++.++...+. .
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L---~~~~~~~~~~~~~~---~~~~~~~~~~~e~~~~~ti~~~~~~~~---------~ 65 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGAL---LGKAGAIDKRGIEE---TKNAFLDKHPEERERGITIDLSFISFE---------K 65 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHH---HHHHTSSSSHHHHH---HHHCHHHSSHHHHHCTSSSSSEEEEEE---------B
T ss_pred CCEEEEEEECCCCCCcEeechhh---hhhccccccccccc---cccccccccchhhhccccccccccccc---------c
Confidence 67999999999999999999999 444 3333222211 123346677778899999976554431 0
Q ss_pred cCCCCCccccCCCCCce---eEEEEee-CCeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEecc
Q psy9643 171 YDTIPYFPVSTVPGHKG---QLVFGLI-NGIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAA 238 (412)
Q Consensus 171 ~~~~~~~~i~d~pGH~~---~l~~G~~-~g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~ 238 (412)
-.....++++|+|||.+ ++..+.. .+..++++ |++.|+ ..++.++++.+|++||+
T Consensus 66 ~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l-------------~~~~~~~~p~ivvlNK~ 132 (188)
T PF00009_consen 66 NENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHL-------------KILRELGIPIIVVLNKM 132 (188)
T ss_dssp TESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHH-------------HHHHHTT-SEEEEEETC
T ss_pred cccccceeecccccccceeecccceecccccceeeeeccccccccccccc-------------ccccccccceEEeeeec
Confidence 12344678999999976 3333321 12333333 233333 88999999999999999
Q ss_pred CCC
Q psy9643 239 GGL 241 (412)
Q Consensus 239 G~l 241 (412)
|.+
T Consensus 133 D~~ 135 (188)
T PF00009_consen 133 DLI 135 (188)
T ss_dssp TSS
T ss_pred cch
Confidence 987
No 70
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=2.9e-13 Score=136.77 Aligned_cols=125 Identities=21% Similarity=0.232 Sum_probs=89.6
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceee
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIF 169 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~ 169 (412)
+++...|+.||+|+|||||||++||+.. .|..+.+ +..+.++|++..||+||||+-+ +.+.+
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~--t~~~~~R------em~~Q~LDsMdiERERGITIKa----------q~v~l 66 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLEL--TGGLSER------EMRAQVLDSMDIERERGITIKA----------QAVRL 66 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHH--hcCcChH------HHHHHhhhhhhhHhhcCceEEe----------eEEEE
Confidence 4566789999999999999999999421 2555544 3446789999999999999943 44556
Q ss_pred ecCC----CCCccccCCCCCcee-----EEEEeeCCeEEEEe--cceeeeecCCCCccccHHHHHHHHcCCCEEEEEecc
Q psy9643 170 PYDT----IPYFPVSTVPGHKGQ-----LVFGLINGIPIMCM--QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAA 238 (412)
Q Consensus 170 ~~~~----~~~~~i~d~pGH~~~-----l~~G~~~g~~vv~~--qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~ 238 (412)
.|.. ...++++|+|||.|- .......|+-+|+- ||-+ .++.++++++-..+.+.|-++||.
T Consensus 67 ~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGve--------AQTlAN~YlAle~~LeIiPViNKI 138 (603)
T COG0481 67 NYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE--------AQTLANVYLALENNLEIIPVLNKI 138 (603)
T ss_pred EEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchH--------HHHHHHHHHHHHcCcEEEEeeecc
Confidence 6652 234689999999881 11223457666653 4432 223346789999999999999999
Q ss_pred CC
Q psy9643 239 GG 240 (412)
Q Consensus 239 G~ 240 (412)
+.
T Consensus 139 DL 140 (603)
T COG0481 139 DL 140 (603)
T ss_pred cC
Confidence 75
No 71
>KOG0461|consensus
Probab=99.37 E-value=6.6e-13 Score=129.53 Aligned_cols=144 Identities=28% Similarity=0.413 Sum_probs=92.8
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDT 173 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~ 173 (412)
++|+|++||||+|||||+.+|+..- ..++| |+.+...+||||++.||..+.-. .+..+|-.+
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~--------------STaAF--Dk~pqS~eRgiTLDLGFS~~~v~--~parLpq~e 68 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELG--------------STAAF--DKHPQSTERGITLDLGFSTMTVL--SPARLPQGE 68 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhc--------------cchhh--ccCCcccccceeEeecceeeecc--cccccCccc
Confidence 6999999999999999999995321 22333 66777889999999999876311 234445555
Q ss_pred CCCccccCCCCCceeEEEEeeCCeEEE-----Ee--------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCC
Q psy9643 174 IPYFPVSTVPGHKGQLVFGLINGIPIM-----CM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG 240 (412)
Q Consensus 174 ~~~~~i~d~pGH~~~l~~G~~~g~~vv-----~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~ 240 (412)
--.|+++|||||++ ++...++|..++ ++ |+.+|+ .+...+--+.++++|+.+-
T Consensus 69 ~lq~tlvDCPGHas-LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL-------------iig~~~c~klvvvinkid~ 134 (522)
T KOG0461|consen 69 QLQFTLVDCPGHAS-LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL-------------IIGELLCKKLVVVINKIDV 134 (522)
T ss_pred cceeEEEeCCCcHH-HHHHHHhhhheeeeeeEEEehhcccccccchhh-------------hhhhhhccceEEEEecccc
Confidence 55789999999985 333333343322 22 455554 4445554455667999987
Q ss_pred CCCCCCCccHHH----HHHHHhhccCCCCCCCC
Q psy9643 241 LNPDYEVGDIMI----IKDHINLMGFAGNNPLL 269 (412)
Q Consensus 241 l~~~~~~Gd~vi----~~d~i~~~~~~~~~pl~ 269 (412)
+-++-+..-+-. ..+-+.-++++|..|..
T Consensus 135 lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~ 167 (522)
T KOG0461|consen 135 LPENQRASKIEKSAKKVRKTLESTGFDGNSPIV 167 (522)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhcCcCCCCcee
Confidence 766544433322 33455667777777764
No 72
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.35 E-value=3.5e-13 Score=145.77 Aligned_cols=126 Identities=25% Similarity=0.360 Sum_probs=87.8
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH------------HHHHHhhhcCCCCceeEeeCcCc
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS------------IAKFLLDSISIRPKIGIICGSGL 156 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~------------~~~~i~~~~~~e~~~GIi~GsGl 156 (412)
+.|+++||+++||||||||||+++| ++. |.+..+..+++++ .++|++|..++|+++|+|+.++.
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~L---l~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~ 96 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRL---LYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAY 96 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHH---HHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeee
Confidence 4678999999999999999999999 666 6565544444431 13588999999999999997765
Q ss_pred ccccccccCceeeecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEe--------cceeeeecCCCCccccHHHHHH
Q psy9643 157 STIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM--------QGRFHYYEGYPLWKCAMPIRVM 224 (412)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll 224 (412)
..+ .+ +-..+.++|+|||.+ +++.|... +..++++ |++.|+ .++
T Consensus 97 ~~~----------~~-~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-------------~~~ 152 (632)
T PRK05506 97 RYF----------AT-PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS-------------FIA 152 (632)
T ss_pred eEE----------cc-CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-------------HHH
Confidence 432 12 223567899999975 44544222 1122232 344454 678
Q ss_pred HHcCCCEEE-EEeccCCCC
Q psy9643 225 KLVGVTHLL-ATNAAGGLN 242 (412)
Q Consensus 225 ~~lGv~~II-~~n~~G~l~ 242 (412)
..+|++.+| ++||+|.++
T Consensus 153 ~~~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 153 SLLGIRHVVLAVNKMDLVD 171 (632)
T ss_pred HHhCCCeEEEEEEeccccc
Confidence 889988765 699999875
No 73
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.34 E-value=1.4e-13 Score=127.79 Aligned_cols=126 Identities=30% Similarity=0.372 Sum_probs=75.7
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY 171 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~ 171 (412)
|++||+++||+|||||||+++|++.... |.. .....+.+|+.+.|+++|+++.++...+ .+
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~--------~~~~~~~~d~~~~E~~rg~Ti~~~~~~~----------~~ 62 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGA--------KFKKYDEIDKAPEEKARGITINTAHVEY----------ET 62 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccc--------cccccccccCChhhhhcCccEEeeeeEe----------cC
Confidence 5899999999999999999999543211 111 0011245788889999999996644322 11
Q ss_pred CCCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEE-EEEeccCCCC
Q psy9643 172 DTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHL-LATNAAGGLN 242 (412)
Q Consensus 172 ~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~I-I~~n~~G~l~ 242 (412)
+-..+.++|+|||.+ ++..+... ...++++... +|..+. ....+.++..+|++.+ +++||+|.+.
T Consensus 63 -~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~----~g~~~~-~~~~~~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 63 -ANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAT----DGPMPQ-TREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred -CCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECC----CCCcHH-HHHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence 233578899999965 33333221 1223332211 111111 0012368888999854 6799999763
No 74
>KOG0466|consensus
Probab=99.34 E-value=2.2e-14 Score=137.77 Aligned_cols=175 Identities=21% Similarity=0.240 Sum_probs=110.5
Q ss_pred chhhccccccccccccccchhhhhccccCCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHH---H--HHHHHH
Q psy9643 62 DKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYE---L--IQSIAK 136 (412)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~---~--~~~~~~ 136 (412)
++.++.++++++| ++++||. ++|||+||||.|||||++++++++..-...++...+ + +..|.-
T Consensus 18 ~~ldv~~l~pls~-----------evisRQA-TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKI 85 (466)
T KOG0466|consen 18 TKLDVTKLHPLSP-----------EVISRQA-TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKI 85 (466)
T ss_pred cccChhhcCCCCH-----------HHhhhee-eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceE
Confidence 7788899999999 8999999 999999999999999999999887653322221111 1 111222
Q ss_pred HHhhh-cCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCce---eEEEEe--eCCeEEEE--------e
Q psy9643 137 FLLDS-ISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGL--INGIPIMC--------M 202 (412)
Q Consensus 137 ~i~~~-~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~--~~g~~vv~--------~ 202 (412)
|-.+. .-.+|.+.-..||+-.+-..+-.-...-.+.-.+++...|||||.= .|.-|. .+++-+++ .
T Consensus 86 Ykc~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQP 165 (466)
T KOG0466|consen 86 YKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQP 165 (466)
T ss_pred EecCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCC
Confidence 32232 1236777888888776532221111111233456778899999931 444443 12222221 1
Q ss_pred cceeeeecCCCCccccHHHHHHHHcCCCEEEE-EeccCCCCCCCCCccHHHHHHHHhhcc
Q psy9643 203 QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLA-TNAAGGLNPDYEVGDIMIIKDHINLMG 261 (412)
Q Consensus 203 qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~-~n~~G~l~~~~~~Gd~vi~~d~i~~~~ 261 (412)
|+.+|+ .+...+..++||. .|+++.++++......--+..|+.-+.
T Consensus 166 QTsEHL-------------aaveiM~LkhiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ 212 (466)
T KOG0466|consen 166 QTSEHL-------------AAVEIMKLKHIIILQNKIDLIKESQALEQHEQIQKFIQGTV 212 (466)
T ss_pred chhhHH-------------HHHHHhhhceEEEEechhhhhhHHHHHHHHHHHHHHHhccc
Confidence 677787 5566667787665 899999887766666666666665543
No 75
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.32 E-value=2e-12 Score=121.80 Aligned_cols=141 Identities=23% Similarity=0.384 Sum_probs=83.2
Q ss_pred eEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCccccccccc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLSTIADSIT 164 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~ 164 (412)
||+++||+|||||||+++| ++. |.+..+..+++++ .++|++|..+.|+++|++..+....+
T Consensus 1 nv~i~Gh~~~GKttL~~~l---l~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~----- 72 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHL---LYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKF----- 72 (219)
T ss_pred CEEEecCCCCChHHHHHHH---HHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEE-----
Confidence 8999999999999999999 665 5555444334331 14578999999999999996654332
Q ss_pred CceeeecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeec-CCCCc-cccHHHHHHHHcCCCEEE-EEec
Q psy9643 165 DRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYE-GYPLW-KCAMPIRVMKLVGVTHLL-ATNA 237 (412)
Q Consensus 165 ~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~ye-g~~~~-~v~~~i~ll~~lGv~~II-~~n~ 237 (412)
.+ .-+.+.++|+|||.+ +++.+.-. ...++++......+| +.... .......++..+|++.+| ++||
T Consensus 73 -----~~-~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK 146 (219)
T cd01883 73 -----ET-EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNK 146 (219)
T ss_pred -----ee-CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEc
Confidence 22 234578999999965 22322111 122333322111111 01111 111123556778876655 7999
Q ss_pred cCCCCCCCCCccH
Q psy9643 238 AGGLNPDYEVGDI 250 (412)
Q Consensus 238 ~G~l~~~~~~Gd~ 250 (412)
+|...+++...++
T Consensus 147 ~Dl~~~~~~~~~~ 159 (219)
T cd01883 147 MDDVTVNWSEERY 159 (219)
T ss_pred cccccccccHHHH
Confidence 9987544333333
No 76
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=99.30 E-value=7.1e-11 Score=110.46 Aligned_cols=159 Identities=19% Similarity=0.264 Sum_probs=122.8
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP 267 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p 267 (412)
..+.|.++|++|.++.+..-. |+. ..++.=+..+|++.+|.++++|++.+++.+||+++.+-.+..++. +
T Consensus 49 ~~~~g~~~g~~v~v~StGIGg-----PSa-aIAvEEL~~lGa~tfiRVGT~Galq~~i~~Gdvvi~tgAvr~dG~---s- 118 (248)
T COG2820 49 RTYTGTYNGKPVTVCSTGIGG-----PSA-AIAVEELARLGAKTFIRVGTTGALQPDINVGDVVVATGAVRLDGA---S- 118 (248)
T ss_pred EEEEEEEcCeEEEEEecCCCC-----chH-HHHHHHHHhcCCeEEEEeeccccccCCCCCCCEEEeccccccccc---c-
Confidence 567899999999998644332 333 234566677999999999999999999999999999888777651 1
Q ss_pred CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC----------C---HHHHHHHHHcC
Q psy9643 268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE----------T---VAELNMLRICG 334 (412)
Q Consensus 268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe----------T---~AE~~~~~~~G 334 (412)
..+-+.. +....|.++...+..++++.+.. ++.|+.+ +.+.|= + ..-.+.|+.+|
T Consensus 119 -----~~y~~~~---~PAv~d~~~t~al~~aa~~~~~~--~~vG~v~--S~D~FYgQ~r~~~~~~~~e~~~~~~~W~~~g 186 (248)
T COG2820 119 -----KHYAPEE---FPAVADFELTNALVEAAESLGVT--VHVGVVA--SSDAFYGQERYYSGFVTPEFKESWEEWQDLG 186 (248)
T ss_pred -----ccccCCC---CCCCCCHHHHHHHHHHHHhcCCc--eEEEEEe--ecccccccccccccccCcchHHHHHHHHHcC
Confidence 1111112 33456899999999999999987 9999765 555554 3 22356888899
Q ss_pred CcEEeCchhHHHHHHHHcCCcEEEEEe-eeccCCC
Q psy9643 335 VDAVGMSTVHEVITAHHCGMTVTAFSL-ITNKCVT 368 (412)
Q Consensus 335 ad~VgMe~~pEa~~A~~~Gi~~~~i~~-VSd~a~~ 368 (412)
...+|||++....+|+..|++..++.. |.|.-.+
T Consensus 187 v~~~EMEsAtlftl~~~~G~rag~V~~vi~n~~~~ 221 (248)
T COG2820 187 VLNIEMESATLFTLGSLRGLRAGAVLGVIANRTQG 221 (248)
T ss_pred chhhHHHHHHHHHHHHHcCcccccEEEEEcccccc
Confidence 999999999999999999999999988 8887643
No 77
>PRK05634 nucleosidase; Provisional
Probab=99.26 E-value=5.4e-12 Score=116.20 Aligned_cols=131 Identities=16% Similarity=0.153 Sum_probs=90.2
Q ss_pred HcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCC
Q psy9643 226 LVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305 (412)
Q Consensus 226 ~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~ 305 (412)
.++++.||++|.+|++++.+. |+++++..++++. +..++ + .+ +.+. . .+..+++
T Consensus 47 ~~~p~~iIn~G~AG~l~~~l~--~vv~~~~v~~~D~--~~~~~-~----~~-~~~~-~---------------~~~~~~~ 100 (185)
T PRK05634 47 GVLPPRVVNIGTAGALRDGLS--GVFEPSHVINHDF--SSDLI-R----AL-TGHP-V---------------ANRLELP 100 (185)
T ss_pred CCCCCEEEEeecccCCCcCCC--eEEEEeeEEEccc--Ccccc-c----cc-cCcc-c---------------ccccccc
Confidence 589999999999999999876 6777777766643 11111 0 00 0000 0 0011222
Q ss_pred cceeeceEEEEecCccCCHHHH-HHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHH
Q psy9643 306 SIVKEGVYSVIGGPNFETVAEL-NMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQA 384 (412)
Q Consensus 306 ~~~~~Gvy~~~~GP~feT~AE~-~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~ 384 (412)
....|+ +.+|++|.+..+. +.++. ++++|+||+++.+++|+++|+|+++|+.|||.+. .....++.++++.
T Consensus 101 -~~~~g~--i~sgD~fvs~~~~~~~l~~-~a~~vDME~aAva~va~~~~vPf~~iR~ISD~a~----~~~~~~~~~~~~~ 172 (185)
T PRK05634 101 -TGDGAV--LATGDAFISDTATRDRLAQ-RADLVDMEGYAVAAVAAEFGVPCRLVKHVSDSAD----ESALGSWPEAVDA 172 (185)
T ss_pred -cCCCce--EecCCceecCHHHHHHHhc-cCeEEecHHHHHHHHHHHhCCCEEEEEEeccCCC----CcccccHHHHHHH
Confidence 123453 4689999876654 34554 7899999999999999999999999999999983 4566678887766
Q ss_pred HHHHHH
Q psy9643 385 GKLRGP 390 (412)
Q Consensus 385 ~~~~~~ 390 (412)
+.+.+.
T Consensus 173 aa~~~~ 178 (185)
T PRK05634 173 SARELG 178 (185)
T ss_pred HHHHHH
Confidence 665544
No 78
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.26 E-value=1.6e-12 Score=123.00 Aligned_cols=124 Identities=25% Similarity=0.299 Sum_probs=75.2
Q ss_pred eeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC-
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD- 172 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~- 172 (412)
+||+++||+|||||||+++| ++. |.+.... ....+.+|....|+++||++.++...+ .|.
T Consensus 1 RNvaiiGhvd~GKTTL~d~L---l~~~g~i~~~~-----~g~~~~~D~~~~E~~RgiTi~~~~~~~----------~~~~ 62 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSL---LASAGIISEKL-----AGKARYMDSREDEQERGITMKSSAISL----------YFEY 62 (222)
T ss_pred CeEEEECCCCCCHHHHHHHH---HHHcCCCcccc-----CCceeeccCCHHHHHhccccccceEEE----------EEec
Confidence 49999999999999999999 544 4332221 112356888889999999997754322 121
Q ss_pred --------CCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccC
Q psy9643 173 --------TIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAG 239 (412)
Q Consensus 173 --------~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G 239 (412)
....+.++|+|||.+ .+..+ ..++..+|+-. -+|..+.. ..-++.+...|++.++++||+|
T Consensus 63 ~~~~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~-----~~g~~~~t-~~~l~~~~~~~~p~ilviNKiD 136 (222)
T cd01885 63 EEEDKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDA-----VEGVCVQT-ETVLRQALKERVKPVLVINKID 136 (222)
T ss_pred CcccccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEEC-----CCCCCHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence 123467899999975 11111 12333333311 11211111 1123566678999899999999
Q ss_pred CCC
Q psy9643 240 GLN 242 (412)
Q Consensus 240 ~l~ 242 (412)
.+.
T Consensus 137 ~~~ 139 (222)
T cd01885 137 RLI 139 (222)
T ss_pred cch
Confidence 763
No 79
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.25 E-value=1.5e-12 Score=139.40 Aligned_cols=116 Identities=28% Similarity=0.465 Sum_probs=78.1
Q ss_pred eeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCC
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDT 173 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~ 173 (412)
.||+++||||||||||+++| ++. |..... . ...++++|..+.|+++||++.+.. ..+.|.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~L---L~~sg~~~~~--~---~v~~~~~D~~~~ErerGiTI~~~~----------~~v~~~~ 63 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDAL---LKQSGTFRAN--E---AVAERVMDSNDLERERGITILAKN----------TAIRYNG 63 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHH---HHhcCCCccc--c---cceeecccCchHHHhCCccEEeee----------EEEEECC
Confidence 69999999999999999999 554 333221 1 112368999999999999996533 2344543
Q ss_pred CCCccccCCCCCce---eEE--EEeeCCeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643 174 IPYFPVSTVPGHKG---QLV--FGLINGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241 (412)
Q Consensus 174 ~~~~~i~d~pGH~~---~l~--~G~~~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l 241 (412)
..++++|+|||.+ .+. .-..++.-+|+- |++.|+ ..+..+|++.||++||+|..
T Consensus 64 -~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l-------------~~a~~~~ip~IVviNKiD~~ 129 (594)
T TIGR01394 64 -TKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVL-------------KKALELGLKPIVVINKIDRP 129 (594)
T ss_pred -EEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHH-------------HHHHHCCCCEEEEEECCCCC
Confidence 3578999999976 111 111223322221 333333 67788999999999999975
Q ss_pred C
Q psy9643 242 N 242 (412)
Q Consensus 242 ~ 242 (412)
+
T Consensus 130 ~ 130 (594)
T TIGR01394 130 S 130 (594)
T ss_pred C
Confidence 4
No 80
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.12 E-value=2e-11 Score=114.04 Aligned_cols=126 Identities=22% Similarity=0.337 Sum_probs=76.8
Q ss_pred eEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCccccccccc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLSTIADSIT 164 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~ 164 (412)
||+++||+|||||||+++| ++. +.+......+++. ..++++|..+.|+++|++..+....
T Consensus 1 ~i~iiG~~~~GKStL~~~L---l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~------ 71 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRL---LYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRY------ 71 (208)
T ss_pred CEEEEECCCCCHHHHHHHH---HHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeE------
Confidence 6899999999999999999 665 5554333333331 2357789999999999999654322
Q ss_pred CceeeecCCCCCccccCCCCCce---eEEEEeeCCe--EEEEecceeeeecCCCCccccH-HHHHHHHcCCCEEE-EEec
Q psy9643 165 DRHIFPYDTIPYFPVSTVPGHKG---QLVFGLINGI--PIMCMQGRFHYYEGYPLWKCAM-PIRVMKLVGVTHLL-ATNA 237 (412)
Q Consensus 165 ~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g~--~vv~~qgr~H~yeg~~~~~v~~-~i~ll~~lGv~~II-~~n~ 237 (412)
+.+ .-..+.++|+|||.+ .+..+ +... .++++...... ..... ...++..++++.+| ++||
T Consensus 72 ----~~~-~~~~~~liDTpG~~~~~~~~~~~-~~~ad~~llVvD~~~~~------~~~~~~~~~~~~~~~~~~iIvviNK 139 (208)
T cd04166 72 ----FST-PKRKFIIADTPGHEQYTRNMVTG-ASTADLAILLVDARKGV------LEQTRRHSYILSLLGIRHVVVAVNK 139 (208)
T ss_pred ----Eec-CCceEEEEECCcHHHHHHHHHHh-hhhCCEEEEEEECCCCc------cHhHHHHHHHHHHcCCCcEEEEEEc
Confidence 222 233578999999964 22222 2222 22232221110 11111 22566778877655 6999
Q ss_pred cCCCC
Q psy9643 238 AGGLN 242 (412)
Q Consensus 238 ~G~l~ 242 (412)
+|..+
T Consensus 140 ~D~~~ 144 (208)
T cd04166 140 MDLVD 144 (208)
T ss_pred hhccc
Confidence 99764
No 81
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.6e-11 Score=122.33 Aligned_cols=106 Identities=31% Similarity=0.470 Sum_probs=79.5
Q ss_pred eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI 174 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~ 174 (412)
++|++.||||||||||+.++++.. .|+.+++.++|++++.|++.+. .++.
T Consensus 1 mii~t~GhidHgkT~L~~altg~~--------------------~d~l~EekKRG~TiDlg~~y~~----------~~d~ 50 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGGV--------------------TDRLPEEKKRGITIDLGFYYRK----------LEDG 50 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcccc--------------------cccchhhhhcCceEeeeeEecc----------CCCC
Confidence 478999999999999999996532 3467778999999999987642 2222
Q ss_pred CCccccCCCCCce---eEEEEe--eCCeEEEE-------ecceeeeecCCCCccccHHHHHHHHcCCCE-EEEEeccCCC
Q psy9643 175 PYFPVSTVPGHKG---QLVFGL--INGIPIMC-------MQGRFHYYEGYPLWKCAMPIRVMKLVGVTH-LLATNAAGGL 241 (412)
Q Consensus 175 ~~~~i~d~pGH~~---~l~~G~--~~g~~vv~-------~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~-II~~n~~G~l 241 (412)
...++|+|||.+ +|+.|. ++.+-+++ .|+++|+ .+++.||.++ +|++++++..
T Consensus 51 -~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL-------------~iLdllgi~~giivltk~D~~ 116 (447)
T COG3276 51 -VMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHL-------------LILDLLGIKNGIIVLTKADRV 116 (447)
T ss_pred -ceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHH-------------HHHHhcCCCceEEEEeccccc
Confidence 356799999987 666662 22222222 2789998 8999999999 6679999988
Q ss_pred CCC
Q psy9643 242 NPD 244 (412)
Q Consensus 242 ~~~ 244 (412)
++.
T Consensus 117 d~~ 119 (447)
T COG3276 117 DEA 119 (447)
T ss_pred cHH
Confidence 755
No 82
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.10 E-value=2.7e-11 Score=117.93 Aligned_cols=124 Identities=22% Similarity=0.281 Sum_probs=77.3
Q ss_pred eEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI 174 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~ 174 (412)
||+++||+|||||||+++| ++. |.+.. ..+++. ..+++|..+.|+++|+++.++...+ .|.+
T Consensus 1 nv~ivGh~~~GKTtL~~~L---l~~~g~~~~--~g~v~~-~~~~~D~~~~E~~rgiti~~~~~~~----------~~~~- 63 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERI---LYYTGRIHK--IGEVHG-GGATMDFMEQERERGITIQSAATTC----------FWKD- 63 (270)
T ss_pred CEEEEcCCCCCHHHHHHHH---HHHcCCCcc--cccccC-CccccCCCccccCCCcCeeccEEEE----------EECC-
Confidence 8999999999999999999 554 43321 122222 2567889999999999997765433 2332
Q ss_pred CCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 175 PYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 175 ~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
..+.++|+|||.+ ....+ ..++ .++++... +|..+. ....+..++..|++.++++||++..+
T Consensus 64 ~~i~liDTPG~~df~~~~~~~l~~aD~-ailVVDa~----~g~~~~-t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 64 HRINIIDTPGHVDFTIEVERSLRVLDG-AVAVFDAV----AGVEPQ-TETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHcCE-EEEEEECC----CCCCHH-HHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 3568899999964 11111 1122 22232211 111111 11123677889999999999999765
No 83
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.10 E-value=2.1e-11 Score=133.99 Aligned_cols=136 Identities=24% Similarity=0.298 Sum_probs=83.2
Q ss_pred ccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCc
Q psy9643 88 YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDR 166 (412)
Q Consensus 88 ~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~ 166 (412)
+.+....+||+++||+|||||||+++| ++. |.+... .....+++|..+.|+++||++.++...+
T Consensus 14 ~~~~~~iRni~iigh~d~GKTTL~e~l---l~~~g~i~~~-----~~g~~~~~D~~~~E~~rgiTi~~~~~~~------- 78 (731)
T PRK07560 14 MKNPEQIRNIGIIAHIDHGKTTLSDNL---LAGAGMISEE-----LAGEQLALDFDEEEQARGITIKAANVSM------- 78 (731)
T ss_pred hhchhcccEEEEEEeCCCCHHHHHHHH---HHHcCCcchh-----hcCcceecCccHHHHHhhhhhhccceEE-------
Confidence 344455889999999999999999999 665 444321 1123466888899999999997765432
Q ss_pred eeeecC-CCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCC
Q psy9643 167 HIFPYD-TIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG 240 (412)
Q Consensus 167 ~~~~~~-~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~ 240 (412)
.+.+. +-..++++|+|||.+ .+..+ ..++. ++++. ..+|..+..- ..++.+...|.+.|+++||+|.
T Consensus 79 -~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~a-vlVvd----a~~g~~~~t~-~~~~~~~~~~~~~iv~iNK~D~ 151 (731)
T PRK07560 79 -VHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGA-IVVVD----AVEGVMPQTE-TVLRQALRERVKPVLFINKVDR 151 (731)
T ss_pred -EEEecCCcEEEEEEcCCCccChHHHHHHHHHhcCEE-EEEEE----CCCCCCccHH-HHHHHHHHcCCCeEEEEECchh
Confidence 11122 123468899999976 11111 12223 33332 1122222111 1125567789999999999997
Q ss_pred CCCCC
Q psy9643 241 LNPDY 245 (412)
Q Consensus 241 l~~~~ 245 (412)
...++
T Consensus 152 ~~~~~ 156 (731)
T PRK07560 152 LIKEL 156 (731)
T ss_pred hcccc
Confidence 65443
No 84
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.10 E-value=2.1e-11 Score=135.61 Aligned_cols=144 Identities=20% Similarity=0.228 Sum_probs=86.7
Q ss_pred cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCce
Q psy9643 89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRH 167 (412)
Q Consensus 89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~ 167 (412)
......+||+++||||||||||+++| ++. |.+... .....+++|..+.|+++||++.++...+.-......
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~L---l~~~g~i~~~-----~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~ 85 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSL---VAAAGIIAQE-----VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDES 85 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHH---HHhcCCcccc-----cCCceeeccCcHHHHHhCCceecceeEEEeeccccc
Confidence 34445889999999999999999999 665 433321 122345678888999999999876544311000000
Q ss_pred eee----cC-CCCCccccCCCCCce---eEEEEe--eCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEec
Q psy9643 168 IFP----YD-TIPYFPVSTVPGHKG---QLVFGL--INGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNA 237 (412)
Q Consensus 168 ~~~----~~-~~~~~~i~d~pGH~~---~l~~G~--~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~ 237 (412)
... .+ .-..++++|+|||.| ++..+. .+++.+|+- +.||..+.+- ..++.+...+++.|+++||
T Consensus 86 ~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvd-----a~~Gv~~~t~-~~~~~~~~~~~p~i~~iNK 159 (843)
T PLN00116 86 LKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVD-----CIEGVCVQTE-TVLRQALGERIRPVLTVNK 159 (843)
T ss_pred ccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEE-----CCCCCcccHH-HHHHHHHHCCCCEEEEEEC
Confidence 000 00 112358899999977 443332 334433331 2233322221 1236778889999999999
Q ss_pred cCCCCCCCC
Q psy9643 238 AGGLNPDYE 246 (412)
Q Consensus 238 ~G~l~~~~~ 246 (412)
+|.+.-+++
T Consensus 160 ~D~~~~~~~ 168 (843)
T PLN00116 160 MDRCFLELQ 168 (843)
T ss_pred Ccccchhhc
Confidence 998754443
No 85
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.09 E-value=3.1e-11 Score=124.28 Aligned_cols=132 Identities=23% Similarity=0.321 Sum_probs=77.4
Q ss_pred cCCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccccc----cc
Q psy9643 89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADS----IT 164 (412)
Q Consensus 89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~----~~ 164 (412)
.++||++||+++||+|||||||+++|++.. .|+.+.|+++|+++..|+..+.-. ++
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~--------------------~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~ 63 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVW--------------------TDRHSEELKRGITIRLGYADATIRKCPDCE 63 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCee--------------------cccCHhHHhcCcEEEecccccccccccccC
Confidence 468899999999999999999999995421 345566788999998887543210 00
Q ss_pred Cc--eeee--cC-------CCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcCC
Q psy9643 165 DR--HIFP--YD-------TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGV 229 (412)
Q Consensus 165 ~~--~~~~--~~-------~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv 229 (412)
.. .+.. +. ....+.+.|+|||.+ +++.+... ...++++..+. |.+.......+..+..+|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~----~~~~~~t~~~l~~l~~~~i 139 (411)
T PRK04000 64 EPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANE----PCPQPQTKEHLMALDIIGI 139 (411)
T ss_pred ccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC----CCCChhHHHHHHHHHHcCC
Confidence 00 0000 00 013578999999965 34444322 12233322221 1000111112356778898
Q ss_pred CE-EEEEeccCCCCCC
Q psy9643 230 TH-LLATNAAGGLNPD 244 (412)
Q Consensus 230 ~~-II~~n~~G~l~~~ 244 (412)
+. +++.||+|.++++
T Consensus 140 ~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 140 KNIVIVQNKIDLVSKE 155 (411)
T ss_pred CcEEEEEEeeccccch
Confidence 75 6668999987643
No 86
>PTZ00416 elongation factor 2; Provisional
Probab=99.06 E-value=4.9e-11 Score=132.56 Aligned_cols=139 Identities=19% Similarity=0.176 Sum_probs=81.7
Q ss_pred ccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCc
Q psy9643 88 YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDR 166 (412)
Q Consensus 88 ~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~ 166 (412)
+.+.+..+||+++||+|||||||+++| ++. |.+... .....+.+|..+.|+++||++.++...+.-.....
T Consensus 13 ~~~~~~irni~iiGh~d~GKTTL~~~L---l~~~g~i~~~-----~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~ 84 (836)
T PTZ00416 13 MDNPDQIRNMSVIAHVDHGKSTLTDSL---VCKAGIISSK-----NAGDARFTDTRADEQERGITIKSTGISLYYEHDLE 84 (836)
T ss_pred hhCccCcCEEEEECCCCCCHHHHHHHH---HHhcCCcccc-----cCCceeecccchhhHhhcceeeccceEEEeecccc
Confidence 334455789999999999999999999 554 433321 12223457888999999999987643321000000
Q ss_pred eeeecCCCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643 167 HIFPYDTIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241 (412)
Q Consensus 167 ~~~~~~~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l 241 (412)
...-..-..++++|+|||.+ ++..+ ..+++-+|+ . ..+|..+.+- ...+.+...++..|+++||+|..
T Consensus 85 -~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVv-d----a~~g~~~~t~-~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 85 -DGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVV-D----CVEGVCVQTE-TVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred -cccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEE-E----CCCCcCccHH-HHHHHHHHcCCCEEEEEEChhhh
Confidence 00000012368999999976 22111 233333333 1 2223233321 12367777899999999999976
No 87
>KOG0465|consensus
Probab=99.03 E-value=5.2e-11 Score=123.56 Aligned_cols=127 Identities=22% Similarity=0.287 Sum_probs=84.8
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY 171 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~ 171 (412)
...||||++|+|+||||++.++ ||. |.... +.+++.. .-++|.++.|+.+|||+-|+- ..+.|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~---Lyy~G~~~~--i~ev~~~-~a~md~m~~er~rgITiqSAA----------t~~~w 101 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERM---LYYTGRIKH--IGEVRGG-GATMDSMELERQRGITIQSAA----------TYFTW 101 (721)
T ss_pred hhcccceEEEEecCCceeehee---eeecceeee--ccccccC-ceeeehHHHHHhcCceeeece----------eeeee
Confidence 3889999999999999999999 776 43321 1222222 456788888999999997643 23344
Q ss_pred CCCCCccccCCCCCce-----eEEEEeeCCeEEEEec-ceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643 172 DTIPYFPVSTVPGHKG-----QLVFGLINGIPIMCMQ-GRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP 243 (412)
Q Consensus 172 ~~~~~~~i~d~pGH~~-----~l~~G~~~g~~vv~~q-gr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~ 243 (412)
. ..+++++|+|||.| +.-.-.++|+-+++.. +.... +.-..-+-++++|+.+|.++|+++-+..
T Consensus 102 ~-~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqs-------Qt~tV~rQ~~ry~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 102 R-DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVES-------QTETVWRQMKRYNVPRICFINKMDRMGA 171 (721)
T ss_pred c-cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceeh-------hhHHHHHHHHhcCCCeEEEEehhhhcCC
Confidence 4 44679999999987 1112235676655541 11111 1111127899999999999999986543
No 88
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.02 E-value=5.6e-11 Score=122.20 Aligned_cols=128 Identities=23% Similarity=0.346 Sum_probs=75.5
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc----cCce
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI----TDRH 167 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~----~~~~ 167 (412)
++++||+++||+|||||||+++|++.. .++.++|.++|+++.+|+..+.... .+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~--------------------~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~ 61 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVW--------------------TDTHSEELKRGISIRLGYADAEIYKCPECDGPE 61 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCee--------------------cccCHhHHHcCceeEecccccccccccccCccc
Confidence 469999999999999999999995321 3455567889999998876542110 0000
Q ss_pred eeecC-----------CCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCE-
Q psy9643 168 IFPYD-----------TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTH- 231 (412)
Q Consensus 168 ~~~~~-----------~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~- 231 (412)
.+... ....+.++|+|||.+ +++.|... ...++++.... |....+....+.++..+|++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~----g~~~~qt~e~l~~l~~~gi~~i 137 (406)
T TIGR03680 62 CYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANE----PCPQPQTKEHLMALEIIGIKNI 137 (406)
T ss_pred cccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCC----CccccchHHHHHHHHHcCCCeE
Confidence 00000 123578999999975 44444322 12233322111 100011111236778899986
Q ss_pred EEEEeccCCCCC
Q psy9643 232 LLATNAAGGLNP 243 (412)
Q Consensus 232 II~~n~~G~l~~ 243 (412)
++++||+|.+++
T Consensus 138 IVvvNK~Dl~~~ 149 (406)
T TIGR03680 138 VIVQNKIDLVSK 149 (406)
T ss_pred EEEEEccccCCH
Confidence 555999998764
No 89
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.01 E-value=1.2e-10 Score=125.17 Aligned_cols=126 Identities=19% Similarity=0.263 Sum_probs=77.0
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeee
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFP 170 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~ 170 (412)
+..+||+++||+|||||||+++| ++. |.++.+. ...+++|.++.|+++||++.+.... +.
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rL---l~~tg~i~~~~------~~~~~lD~~~~ErerGiTi~~~~v~----------~~ 65 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRL---IELTGTLSERE------MKAQVLDSMDLERERGITIKAQAVR----------LN 65 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHH---HHhcCCCcccc------cccccccCchHHhhcCCcccccEEE----------EE
Confidence 34689999999999999999999 554 4443321 1347789999999999999664422 22
Q ss_pred cC----CCCCccccCCCCCcee---EE--EEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643 171 YD----TIPYFPVSTVPGHKGQ---LV--FGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241 (412)
Q Consensus 171 ~~----~~~~~~i~d~pGH~~~---l~--~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l 241 (412)
|. +...++++|+|||.+- +. .-..++. ++++.... |....+. .....+...+++.|+++||+|..
T Consensus 66 ~~~~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~a-ILVVDas~----gv~~qt~-~~~~~~~~~~lpiIvViNKiDl~ 139 (600)
T PRK05433 66 YKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGA-LLVVDASQ----GVEAQTL-ANVYLALENDLEIIPVLNKIDLP 139 (600)
T ss_pred EEccCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEE-EEEEECCC----CCCHHHH-HHHHHHHHCCCCEEEEEECCCCC
Confidence 32 1224689999999761 00 1112232 23332211 1111100 12245566799989999999964
Q ss_pred C
Q psy9643 242 N 242 (412)
Q Consensus 242 ~ 242 (412)
+
T Consensus 140 ~ 140 (600)
T PRK05433 140 A 140 (600)
T ss_pred c
Confidence 4
No 90
>PRK00007 elongation factor G; Reviewed
Probab=99.00 E-value=1.2e-10 Score=127.39 Aligned_cols=128 Identities=21% Similarity=0.246 Sum_probs=81.1
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD 172 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~ 172 (412)
.+||+++||+|||||||+++| ++. |.... ..++. ...+++|..+.|+++|+++.+.... +.|.
T Consensus 10 Irni~iiG~~~~GKsTL~~~l---l~~~g~~~~--~g~v~-~~~~~~D~~~~E~~rg~ti~~~~~~----------~~~~ 73 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERI---LFYTGVNHK--IGEVH-DGAATMDWMEQEQERGITITSAATT----------CFWK 73 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHH---HHhcCCccc--ccccc-CCcccCCCCHHHHhCCCCEeccEEE----------EEEC
Confidence 789999999999999999999 554 33211 11111 1246789999999999999664422 2332
Q ss_pred CCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC
Q psy9643 173 TIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD 244 (412)
Q Consensus 173 ~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~ 244 (412)
-..++++|+|||.+ ++..+ ..++. ++++.+ .+|..+.+ ...+..+...|.+.|+++||+|..+.+
T Consensus 74 -~~~~~liDTPG~~~f~~ev~~al~~~D~~-vlVvda----~~g~~~qt-~~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 74 -DHRINIIDTPGHVDFTIEVERSLRVLDGA-VAVFDA----VGGVEPQS-ETVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred -CeEEEEEeCCCcHHHHHHHHHHHHHcCEE-EEEEEC----CCCcchhh-HHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 24689999999975 11111 12222 233221 12222221 112378889999999999999987644
No 91
>PRK10218 GTP-binding protein; Provisional
Probab=98.99 E-value=2.8e-10 Score=122.01 Aligned_cols=124 Identities=21% Similarity=0.331 Sum_probs=77.0
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD 172 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~ 172 (412)
..||+++||+|||||||+.+| ++. |..... ....++++|..+.|+++|+++.+.. ..+.|.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~L---l~~~g~~~~~-----~~~~~~v~D~~~~E~erGiTi~~~~----------~~i~~~ 66 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKL---LQQSGTFDSR-----AETQERVMDSNDLEKERGITILAKN----------TAIKWN 66 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHH---HHhcCCcccc-----cccceeeeccccccccCceEEEEEE----------EEEecC
Confidence 689999999999999999999 543 332211 1112378999999999999985433 223343
Q ss_pred CCCCccccCCCCCcee--E---EEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 173 TIPYFPVSTVPGHKGQ--L---VFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 173 ~~~~~~i~d~pGH~~~--l---~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
+ ..++++|+|||.+- . ..-..++.-+|+ .. .+|..+ ...+..+.+..+|++.|+++||+|..+
T Consensus 67 ~-~~inliDTPG~~df~~~v~~~l~~aDg~ILVV-Da----~~G~~~-qt~~~l~~a~~~gip~IVviNKiD~~~ 134 (607)
T PRK10218 67 D-YRINIVDTPGHADFGGEVERVMSMVDSVLLVV-DA----FDGPMP-QTRFVTKKAFAYGLKPIVVINKVDRPG 134 (607)
T ss_pred C-EEEEEEECCCcchhHHHHHHHHHhCCEEEEEE-ec----ccCccH-HHHHHHHHHHHcCCCEEEEEECcCCCC
Confidence 3 35789999999761 0 011122322222 11 111111 111123677789999999999999654
No 92
>PRK12739 elongation factor G; Reviewed
Probab=98.98 E-value=1.4e-10 Score=126.78 Aligned_cols=128 Identities=22% Similarity=0.290 Sum_probs=79.2
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD 172 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~ 172 (412)
.+||+++||+|||||||+++| ++. |.... ..++.. ..+.+|..+.|+++||++.+.... +.|
T Consensus 8 irni~iiGh~~~GKsTL~~~l---l~~~g~~~~--~~~v~~-~~~~~D~~~~E~~rgiti~~~~~~----------~~~- 70 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERI---LYYTGKSHK--IGEVHD-GAATMDWMEQEQERGITITSAATT----------CFW- 70 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHH---HHhCCCccc--cccccC-CccccCCChhHhhcCCCccceeEE----------EEE-
Confidence 889999999999999999999 554 32211 111111 146789999999999999654322 233
Q ss_pred CCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC
Q psy9643 173 TIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD 244 (412)
Q Consensus 173 ~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~ 244 (412)
+-..+.++|+|||.+ +...+ ..++. ++++.. .+|..+.+ ...+..+...|++.|+++||+|..+.+
T Consensus 71 ~~~~i~liDTPG~~~f~~e~~~al~~~D~~-ilVvDa----~~g~~~qt-~~i~~~~~~~~~p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 71 KGHRINIIDTPGHVDFTIEVERSLRVLDGA-VAVFDA----VSGVEPQS-ETVWRQADKYGVPRIVFVNKMDRIGAD 141 (691)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHhCeE-EEEEeC----CCCCCHHH-HHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 233578999999965 11111 11222 222221 11211111 112367788999999999999987543
No 93
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.96 E-value=2.1e-10 Score=123.49 Aligned_cols=105 Identities=32% Similarity=0.448 Sum_probs=71.7
Q ss_pred eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI 174 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~ 174 (412)
+.|+++||+|||||||+.+|++.- .|+.++|+++|||+..|+..+ ...+-
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~--------------------~dr~~eE~~rGiTI~l~~~~~----------~~~~g 50 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVN--------------------ADRLPEEKKRGMTIDLGYAYW----------PQPDG 50 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--------------------CccchhcccCCceEEeeeEEE----------ecCCC
Confidence 368999999999999999995421 345667889999997766432 11112
Q ss_pred CCccccCCCCCce---eEEEEeeCCeE--EEEe--------cceeeeecCCCCccccHHHHHHHHcCCCE-EEEEeccCC
Q psy9643 175 PYFPVSTVPGHKG---QLVFGLINGIP--IMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTH-LLATNAAGG 240 (412)
Q Consensus 175 ~~~~i~d~pGH~~---~l~~G~~~g~~--vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~-II~~n~~G~ 240 (412)
..+.++|+|||.+ +++.|. .+.. ++++ |+++|. .+++.+|++. ||++||+|.
T Consensus 51 ~~i~~IDtPGhe~fi~~m~~g~-~~~D~~lLVVda~eg~~~qT~ehl-------------~il~~lgi~~iIVVlNKiDl 116 (614)
T PRK10512 51 RVLGFIDVPGHEKFLSNMLAGV-GGIDHALLVVACDDGVMAQTREHL-------------AILQLTGNPMLTVALTKADR 116 (614)
T ss_pred cEEEEEECCCHHHHHHHHHHHh-hcCCEEEEEEECCCCCcHHHHHHH-------------HHHHHcCCCeEEEEEECCcc
Confidence 2367899999975 555553 2222 2222 345555 7888999997 467999998
Q ss_pred CCC
Q psy9643 241 LNP 243 (412)
Q Consensus 241 l~~ 243 (412)
+++
T Consensus 117 v~~ 119 (614)
T PRK10512 117 VDE 119 (614)
T ss_pred CCH
Confidence 653
No 94
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.88 E-value=7.9e-10 Score=118.69 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=74.9
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY 171 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~ 171 (412)
...||+++||+|||||||+++| ++. |.+..+. ...+.+|.++.|+++||++.+... .+.|
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rL---l~~~g~i~~~~------~~~~~~D~~~~ErerGiTi~~~~v----------~~~~ 62 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRL---LEYTGAISERE------MREQVLDSMDLERERGITIKAQAV----------RLNY 62 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHH---HHHcCCCcccc------ccccccCCChHHHhcCCCeeeeEE----------EEEE
Confidence 3679999999999999999999 543 4333221 123667888889999999965332 2233
Q ss_pred C--C--CCCccccCCCCCcee--EEEEeeCCe--EEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 172 D--T--IPYFPVSTVPGHKGQ--LVFGLINGI--PIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 172 ~--~--~~~~~i~d~pGH~~~--l~~G~~~g~--~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
. + ...+++.|+|||.+- .+...+.+. .++++... +|...... ..++.+...++..|++.||+|..+
T Consensus 63 ~~~~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat----~g~~~qt~-~~~~~~~~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 63 KAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAA----QGIEAQTL-ANVYLALENDLEIIPVINKIDLPS 136 (595)
T ss_pred EcCCCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCC----CCCCHhHH-HHHHHHHHcCCCEEEEEECcCCCc
Confidence 2 1 124688999999761 111112222 22222211 11111111 122455567999899999999643
No 95
>KOG0469|consensus
Probab=98.87 E-value=3.5e-10 Score=115.05 Aligned_cols=199 Identities=18% Similarity=0.249 Sum_probs=107.3
Q ss_pred hccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc
Q psy9643 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI 163 (412)
Q Consensus 85 ~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~ 163 (412)
+..+.+++...|+.+|+|||||||||+..| ..+ |.+... +..-...+|..+.|.+||||+-|.--++--.+
T Consensus 10 r~lM~k~~NiRNmSVIAHVDHGKSTLTDsL---V~kAgIis~a-----kaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~ 81 (842)
T KOG0469|consen 10 RELMDKKKNIRNMSVIAHVDHGKSTLTDSL---VQKAGIISAA-----KAGETRFTDTRKDEQERGITIKSTAISLFFEM 81 (842)
T ss_pred HHHhccccccccceEEEEecCCcchhhHHH---HHhhceeeec-----ccCCccccccccchhhcceEeeeeeeeehhhh
Confidence 355677888899999999999999999999 333 333210 11112346777789999999988665542222
Q ss_pred cCce--eeec-CCCCC--ccccCCCCCce--eEEEE---eeCCeEEEE-------ecceeeeecCCCCccccHHHHHHHH
Q psy9643 164 TDRH--IFPY-DTIPY--FPVSTVPGHKG--QLVFG---LINGIPIMC-------MQGRFHYYEGYPLWKCAMPIRVMKL 226 (412)
Q Consensus 164 ~~~~--~~~~-~~~~~--~~i~d~pGH~~--~l~~G---~~~g~~vv~-------~qgr~H~yeg~~~~~v~~~i~ll~~ 226 (412)
++.. .+.- .+-.+ ++++|.|||.| .-++. .-+|+-||+ .|+..-+ +-+-.
T Consensus 82 ~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVL-------------rQA~~ 148 (842)
T KOG0469|consen 82 SDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-------------RQAIA 148 (842)
T ss_pred hHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHH-------------HHHHH
Confidence 2111 0100 11223 37899999977 11111 124555543 3544332 33334
Q ss_pred cCCCEEEEEeccCCCCCCCCCccHHHHHHHH------hh--ccCCCCCCCCCCC-CCCCC-CCCCCCcccccHHHHHHHH
Q psy9643 227 VGVTHLLATNAAGGLNPDYEVGDIMIIKDHI------NL--MGFAGNNPLLGVN-EDRFG-PRFPPMNKAYNKQLRAATL 296 (412)
Q Consensus 227 lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i------~~--~~~~~~~pl~g~~-~~~~g-~~~~~~~~~~d~~Lr~~~~ 296 (412)
-.++.+++.|+++.---+++....-+-.-+- |- ..+ ++.|+.... +...| ..|.+--.-|...||+.+.
T Consensus 149 ERIkPvlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy-~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~ 227 (842)
T KOG0469|consen 149 ERIKPVLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTY-GDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAE 227 (842)
T ss_pred hhccceEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEec-ccCCcCceEecCCCCceeeccccchhhhhHHHHHH
Confidence 4577788899998533334443322222111 10 000 111221000 00011 2233334556678888888
Q ss_pred HHHHHcCCC
Q psy9643 297 DIARDLNMS 305 (412)
Q Consensus 297 ~~a~~~g~~ 305 (412)
.-++++|+.
T Consensus 228 ~Y~~KF~~~ 236 (842)
T KOG0469|consen 228 MYAKKFGID 236 (842)
T ss_pred HHHHHhCCc
Confidence 888888775
No 96
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.87 E-value=7.5e-10 Score=121.08 Aligned_cols=128 Identities=20% Similarity=0.232 Sum_probs=79.1
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD 172 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~ 172 (412)
.+||+++||+|||||||+++| ++. |.+.. ..+.. ...+.+|..+.|+++||++.+... .+.|.
T Consensus 10 irni~iiG~~~~GKsTL~~~l---l~~~g~~~~--~~~~~-~g~~~~D~~~~e~~rgiti~~~~~----------~~~~~ 73 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERI---LFYTGRIHK--IGEVH-DGAATMDWMEQEKERGITITSAAT----------TVFWK 73 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHH---HHhCCCccc--ccccc-CCccccCCCHHHHhcCCCEecceE----------EEEEC
Confidence 789999999999999999999 554 33211 11111 124778888999999999965432 23333
Q ss_pred CCCCccccCCCCCceeEEE--E---eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC
Q psy9643 173 TIPYFPVSTVPGHKGQLVF--G---LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD 244 (412)
Q Consensus 173 ~~~~~~i~d~pGH~~~l~~--G---~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~ 244 (412)
+ ..+.++|+|||.+.+.. . ..++. ++++... +|..+. ....++.++..+++.++++||+|..+.+
T Consensus 74 ~-~~i~liDTPG~~~~~~~~~~~l~~~D~~-ilVvda~----~g~~~~-~~~~~~~~~~~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 74 G-HRINIIDTPGHVDFTVEVERSLRVLDGA-VAVLDAV----GGVQPQ-SETVWRQANRYEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred C-eEEEEEECCCCcchhHHHHHHHHHhCEE-EEEEeCC----CCCChh-HHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 3 35789999999651110 0 11222 2232211 121111 1123366788899999999999987543
No 97
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.85 E-value=8.3e-10 Score=118.29 Aligned_cols=105 Identities=30% Similarity=0.391 Sum_probs=70.0
Q ss_pred eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI 174 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~ 174 (412)
+||+++||+|||||||+.+|++.- .++.++|.++||++..|+..+ .+.+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~--------------------~d~~~eE~~rGiTid~~~~~~----------~~~~- 49 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIA--------------------ADRLPEEKKRGMTIDLGFAYF----------PLPD- 49 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc--------------------CcCChhHhcCCceEEeEEEEE----------EeCC-
Confidence 589999999999999999995421 234445677899986665332 2222
Q ss_pred CCccccCCCCCce---eEEEEeeCCeE-EEEe--------cceeeeecCCCCccccHHHHHHHHcCCC-EEEEEeccCCC
Q psy9643 175 PYFPVSTVPGHKG---QLVFGLINGIP-IMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVT-HLLATNAAGGL 241 (412)
Q Consensus 175 ~~~~i~d~pGH~~---~l~~G~~~g~~-vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~-~II~~n~~G~l 241 (412)
..+.++|+|||.. +++.|..+... ++++ |+++|. .+++.+|++ .||+.||+|.+
T Consensus 50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl-------------~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHL-------------AVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHH-------------HHHHHcCCCeEEEEEECCCCC
Confidence 3568899999965 45554332222 2222 233443 678889999 67779999987
Q ss_pred CC
Q psy9643 242 NP 243 (412)
Q Consensus 242 ~~ 243 (412)
++
T Consensus 117 ~~ 118 (581)
T TIGR00475 117 NE 118 (581)
T ss_pred CH
Confidence 54
No 98
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.83 E-value=9.1e-10 Score=105.26 Aligned_cols=126 Identities=21% Similarity=0.374 Sum_probs=74.9
Q ss_pred eEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI 174 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~ 174 (412)
||+++||+|+|||||+.+| ++. |.+.. ..++... .+.+|..+.|+++|+++.+....+ .+.+
T Consensus 1 ni~i~G~~~~GKTtL~~~l---l~~~g~i~~--~g~v~~~-~~~~D~~~~e~~rg~ti~~~~~~~----------~~~~- 63 (237)
T cd04168 1 NIGILAHVDAGKTTLTESL---LYTSGAIRK--LGSVDKG-TTRTDTMELERQRGITIFSAVASF----------QWED- 63 (237)
T ss_pred CEEEEcCCCCCHHHHHHHH---HHHcCCccc--cccccCC-cccCCCchhHhhCCCceeeeeEEE----------EECC-
Confidence 8999999999999999999 554 33221 1111111 245677777899999986655332 2322
Q ss_pred CCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC
Q psy9643 175 PYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD 244 (412)
Q Consensus 175 ~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~ 244 (412)
..+.++|+|||.+ ....+ ..++..+|+-.. +|... ........+...|++.++++||++..+.+
T Consensus 64 ~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~-----~g~~~-~~~~~~~~~~~~~~P~iivvNK~D~~~a~ 132 (237)
T cd04168 64 TKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAV-----EGVQA-QTRILWRLLRKLNIPTIIFVNKIDRAGAD 132 (237)
T ss_pred EEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCC-----CCCCH-HHHHHHHHHHHcCCCEEEEEECccccCCC
Confidence 2578899999965 11111 122333333211 11111 11112356778899999999999976544
No 99
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.83 E-value=1.3e-09 Score=119.77 Aligned_cols=137 Identities=23% Similarity=0.289 Sum_probs=80.4
Q ss_pred cccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccC
Q psy9643 87 VYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITD 165 (412)
Q Consensus 87 ~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~ 165 (412)
.+.+.+..+||+++||+|||||||+++| ++. |.+... .....+.+|..+.|+++|+++.++...+-
T Consensus 12 ~~~~~~~irnI~ivGh~~~GKTTL~~~l---l~~~g~i~~~-----~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~----- 78 (720)
T TIGR00490 12 LMWKPKFIRNIGIVAHIDHGKTTLSDNL---LAGAGMISEE-----LAGQQLYLDFDEQEQERGITINAANVSMV----- 78 (720)
T ss_pred HhhCcccccEEEEEEeCCCCHHHHHHHH---HHHcCCCchh-----cCCceeecCCCHHHHhhcchhhcccceeE-----
Confidence 3344555789999999999999999999 554 433321 11123456777778999999987654321
Q ss_pred ceeeecCCCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCC
Q psy9643 166 RHIFPYDTIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG 240 (412)
Q Consensus 166 ~~~~~~~~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~ 240 (412)
..+.+ .-..+.++|+|||.+ .+..+ ..++. ++++... +|..... ...++.+...+.+.++++||++.
T Consensus 79 -~~~~~-~~~~i~liDTPG~~~f~~~~~~al~~aD~~-llVvda~----~g~~~~t-~~~~~~~~~~~~p~ivviNKiD~ 150 (720)
T TIGR00490 79 -HEYEG-NEYLINLIDTPGHVDFGGDVTRAMRAVDGA-IVVVCAV----EGVMPQT-ETVLRQALKENVKPVLFINKVDR 150 (720)
T ss_pred -EeecC-CceEEEEEeCCCccccHHHHHHHHHhcCEE-EEEEecC----CCCCccH-HHHHHHHHHcCCCEEEEEEChhc
Confidence 01111 123468899999965 11111 12222 2232211 1111111 11224566788999999999998
Q ss_pred CCCC
Q psy9643 241 LNPD 244 (412)
Q Consensus 241 l~~~ 244 (412)
...+
T Consensus 151 ~~~~ 154 (720)
T TIGR00490 151 LINE 154 (720)
T ss_pred ccch
Confidence 7543
No 100
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.79 E-value=1.1e-09 Score=115.98 Aligned_cols=128 Identities=21% Similarity=0.243 Sum_probs=74.4
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHH---HHHHHHhhhcCCCCceeEeeCcCcccccccccCcee
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQ---SIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHI 168 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~---~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~ 168 (412)
...||+++||+|||||||+++| ++. |.+... ..++ ......+|..+.|+++||++.+... .
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~L---l~~~g~i~~~--g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~----------~ 73 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKL---LLFGGAIQEA--GTVKGRKSGRHATSDWMEMEKQRGISVTSSVM----------Q 73 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHH---HHhCCCcccc--ceeeccccCccccCCCcHHHHhhCCceeeeeE----------E
Confidence 3789999999999999999999 554 332211 1111 0111235667778999999855432 3
Q ss_pred eecCCCCCccccCCCCCcee---EEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 169 FPYDTIPYFPVSTVPGHKGQ---LVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 169 ~~~~~~~~~~i~d~pGH~~~---l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
+.|.. ..++++|+|||.+- .... ..++.- +++... +|..+. .......++..|+..|+++||+|..+
T Consensus 74 ~~~~~-~~inliDTPG~~df~~~~~~~l~~aD~aI-lVvDa~----~gv~~~-t~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 74 FPYRD-CLINLLDTPGHEDFSEDTYRTLTAVDSAL-MVIDAA----KGVEPQ-TRKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred EEECC-EEEEEEECCCchhhHHHHHHHHHHCCEEE-EEEecC----CCCCHH-HHHHHHHHHhcCCCEEEEEECCcccc
Confidence 34433 24789999999651 1111 122332 222211 111111 11123567778999999999998654
No 101
>KOG0464|consensus
Probab=98.79 E-value=8.3e-10 Score=110.17 Aligned_cols=77 Identities=31% Similarity=0.380 Sum_probs=51.0
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD 172 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~ 172 (412)
..|||+|+|+|+||||++.+| ||- |.+.. ...+++. +.+.|-+..|+++||++.|. ...+.|.
T Consensus 37 irnigiiahidagktttteri---ly~ag~~~s--~g~vddg-dtvtdfla~erergitiqsa----------av~fdwk 100 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERI---LYLAGAIHS--AGDVDDG-DTVTDFLAIERERGITIQSA----------AVNFDWK 100 (753)
T ss_pred hhcceeEEEecCCCchhHHHH---HHHhhhhhc--ccccCCC-chHHHHHHHHHhcCceeeee----------eeecccc
Confidence 789999999999999999999 664 32210 1111111 12234455689999999663 2334444
Q ss_pred CCCCccccCCCCCce
Q psy9643 173 TIPYFPVSTVPGHKG 187 (412)
Q Consensus 173 ~~~~~~i~d~pGH~~ 187 (412)
. .+++++|+|||.|
T Consensus 101 g-~rinlidtpghvd 114 (753)
T KOG0464|consen 101 G-HRINLIDTPGHVD 114 (753)
T ss_pred c-ceEeeecCCCcce
Confidence 2 3568999999987
No 102
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.78 E-value=2.5e-09 Score=99.58 Aligned_cols=124 Identities=19% Similarity=0.231 Sum_probs=67.6
Q ss_pred eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccccc-c----------
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADS-I---------- 163 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~-~---------- 163 (412)
+||+++||+|||||||+++|++.. .+..+.+.++|+++..|+..+.-. .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~--------------------~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 60 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVW--------------------TVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYC 60 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--------------------CCCCCeeEEcCCceeecccccccccccCcCCCCccc
Confidence 699999999999999999995431 234455677788887776554210 0
Q ss_pred ----cCceeeecC-------CCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcC
Q psy9643 164 ----TDRHIFPYD-------TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVG 228 (412)
Q Consensus 164 ----~~~~~~~~~-------~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lG 228 (412)
++....++. ....+.++|+|||.+ .++.+... ...++++..... +..+... ..+..+...+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~---~~~~~t~-~~l~~~~~~~ 136 (203)
T cd01888 61 YRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEP---CPQPQTS-EHLAALEIMG 136 (203)
T ss_pred cccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCC---CCCcchH-HHHHHHHHcC
Confidence 001111111 114578899999964 22222211 122233222110 0011111 1224456678
Q ss_pred CCE-EEEEeccCCCC
Q psy9643 229 VTH-LLATNAAGGLN 242 (412)
Q Consensus 229 v~~-II~~n~~G~l~ 242 (412)
.+. +|++||+|..+
T Consensus 137 ~~~iiivvNK~Dl~~ 151 (203)
T cd01888 137 LKHIIIVQNKIDLVK 151 (203)
T ss_pred CCcEEEEEEchhccC
Confidence 764 56799999764
No 103
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.76 E-value=1.8e-09 Score=101.19 Aligned_cols=135 Identities=20% Similarity=0.146 Sum_probs=71.7
Q ss_pred eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI 174 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~ 174 (412)
.||+++||+|||||||+++|+... +....+ .+......+.+++...|+++|+++.+....+.-.-.+ ...
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~--~~~~~~--~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~------~~~ 70 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQT--HDLTPS--GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSK------GKS 70 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhc--CCCccc--ccccCCceeECCCCHHHHHcCccccccceeEEEEcCC------CCE
Confidence 489999999999999999994322 222110 1112223344677777889999986654332100000 011
Q ss_pred CCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC
Q psy9643 175 PYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD 244 (412)
Q Consensus 175 ~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~ 244 (412)
..+.++|+|||.+ ....+... ...++++... +|..... ...++.+...+...+++.||+|.+..+
T Consensus 71 ~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~----~~~~~~~-~~~~~~~~~~~~p~iiviNK~D~~~~~ 139 (213)
T cd04167 71 YLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVV----EGVTSNT-ERLIRHAILEGLPIVLVINKIDRLILE 139 (213)
T ss_pred EEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECC----CCCCHHH-HHHHHHHHHcCCCEEEEEECcccCccc
Confidence 2467899999964 11111111 1222232211 1111110 011244555788888899999987443
No 104
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.74 E-value=1.8e-09 Score=104.97 Aligned_cols=128 Identities=21% Similarity=0.269 Sum_probs=71.9
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH---HHHHHhhhcCCCCceeEeeCcCcccccccccCceee
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS---IAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIF 169 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~---~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~ 169 (412)
..||+++||+|||||||+++| ++. |.+... ..++. ...-.+|..+.|+++|+++.+.... +
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~l---l~~~g~i~~~--g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~----------~ 66 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKL---LLFGGAIREA--GAVKARKSRKHATSDWMEIEKQRGISVTSSVMQ----------F 66 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHH---HHhcCCcccC--ceecccccCCCccCCCcHHHHhCCCCeEEEEEE----------E
Confidence 379999999999999999999 554 333211 11110 0112356666788899888554322 2
Q ss_pred ecCCCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643 170 PYDTIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP 243 (412)
Q Consensus 170 ~~~~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~ 243 (412)
.+.+ ..+.++|+|||.+ ....+ ..++. ++++.... |.... .......+...+++.++++||++..+.
T Consensus 67 ~~~~-~~i~liDTPG~~df~~~~~~~l~~aD~~-IlVvda~~----g~~~~-~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 67 EYRD-CVINLLDTPGHEDFSEDTYRTLTAVDSA-VMVIDAAK----GVEPQ-TRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred eeCC-EEEEEEECCCchHHHHHHHHHHHHCCEE-EEEEECCC----CccHH-HHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 3332 2578899999964 11111 11222 33322111 11111 011235566789999999999986543
No 105
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=2.8e-09 Score=107.43 Aligned_cols=120 Identities=23% Similarity=0.284 Sum_probs=73.0
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccccccch-hhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLGS-YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD 172 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~-~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~ 172 (412)
..+++||.|.|+|||||+..|+ |+-|.+.. .+...-.....-..|++..|++|||.+-|+. ..++|.
T Consensus 12 RRTFAIISHPDAGKTTlTEkLL--lfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSV----------MqF~Y~ 79 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLL--LFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSV----------MQFDYA 79 (528)
T ss_pred hcceeEEecCCCCcccHHHHHH--HhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeE----------EEeccC
Confidence 5688999999999999999993 33232211 1110000001112455677999999996644 345676
Q ss_pred CCCCccccCCCCCce----eE-EEEeeCCeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccC
Q psy9643 173 TIPYFPVSTVPGHKG----QL-VFGLINGIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAG 239 (412)
Q Consensus 173 ~~~~~~i~d~pGH~~----~l-~~G~~~g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G 239 (412)
+. .+++.|+|||.| .. ....++ ..|+++ |++.-. .+++.-|...+-++||.|
T Consensus 80 ~~-~iNLLDTPGHeDFSEDTYRtLtAvD-sAvMVIDaAKGiE~qT~KLf-------------eVcrlR~iPI~TFiNKlD 144 (528)
T COG4108 80 DC-LVNLLDTPGHEDFSEDTYRTLTAVD-SAVMVIDAAKGIEPQTLKLF-------------EVCRLRDIPIFTFINKLD 144 (528)
T ss_pred Ce-EEeccCCCCccccchhHHHHHHhhh-eeeEEEecccCccHHHHHHH-------------HHHhhcCCceEEEeeccc
Confidence 54 579999999987 11 111122 233333 333222 677878888888899987
Q ss_pred C
Q psy9643 240 G 240 (412)
Q Consensus 240 ~ 240 (412)
-
T Consensus 145 R 145 (528)
T COG4108 145 R 145 (528)
T ss_pred c
Confidence 5
No 106
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.71 E-value=3.4e-09 Score=112.27 Aligned_cols=128 Identities=19% Similarity=0.249 Sum_probs=74.2
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHH-HH--HHHHhhhcCCCCceeEeeCcCcccccccccCce
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQ-SI--AKFLLDSISIRPKIGIICGSGLSTIADSITDRH 167 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~-~~--~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~ 167 (412)
...+||+++||+|||||||+++| |+. |.+... ..++ .. ....+|..+.|+++||++.+...
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~L---l~~~g~i~~~--g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~---------- 73 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKV---LLYGGAIQTA--GAVKGRGSQRHAKSDWMEMEKQRGISITTSVM---------- 73 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHH---HHhCCCcccc--ceeccccccccccCCCCHHHHhcCCcEEEEEE----------
Confidence 34789999999999999999999 554 333211 1111 00 11346777789999999855432
Q ss_pred eeecCCCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643 168 IFPYDTIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241 (412)
Q Consensus 168 ~~~~~~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l 241 (412)
.+.|.+ ..++++|+|||.+ ....+ ..++. ++++.... |.... ...-...++..++..++++||++..
T Consensus 74 ~~~~~~-~~inliDTPG~~df~~~~~~~l~~aD~a-IlVvDa~~----gv~~~-t~~l~~~~~~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 74 QFPYRD-CLVNLLDTPGHEDFSEDTYRTLTAVDNC-LMVIDAAK----GVETR-TRKLMEVTRLRDTPIFTFMNKLDRD 145 (527)
T ss_pred EEeeCC-eEEEEEECCChhhHHHHHHHHHHhCCEE-EEEEECCC----CCCHH-HHHHHHHHHhcCCCEEEEEECcccc
Confidence 233433 3578899999964 11111 11222 22222110 11111 1112356677889999999999864
No 107
>KOG0467|consensus
Probab=98.62 E-value=9.4e-09 Score=109.21 Aligned_cols=128 Identities=23% Similarity=0.267 Sum_probs=82.0
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD 172 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~ 172 (412)
..||.+++|||||||||++.| +.. |.+..+--.++ ..+|..++|..||||.-|+--+ +.
T Consensus 9 irn~~~vahvdhgktsladsl---~asngvis~rlagki-----rfld~redeq~rgitmkss~is------------~~ 68 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSL---VASNGVISSRLAGKI-----RFLDTREDEQTRGITMKSSAIS------------LL 68 (887)
T ss_pred eeEEEEEEEecCCccchHHHH---HhhccEechhhccce-----eeccccchhhhhceeeeccccc------------cc
Confidence 689999999999999999999 444 44433222222 2367778899999999775432 21
Q ss_pred -CCCCccccCCCCCce--eEEEEe---eCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCC
Q psy9643 173 -TIPYFPVSTVPGHKG--QLVFGL---INGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYE 246 (412)
Q Consensus 173 -~~~~~~i~d~pGH~~--~l~~G~---~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~ 246 (412)
+-..++++|.|||.| ..+... .+|+-|++ -..||..+++. ..+|-+-.-|.+.++++||++.+--+++
T Consensus 69 ~~~~~~nlidspghvdf~sevssas~l~d~alvlv-----dvvegv~~qt~-~vlrq~~~~~~~~~lvinkidrl~~el~ 142 (887)
T KOG0467|consen 69 HKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLV-----DVVEGVCSQTY-AVLRQAWIEGLKPILVINKIDRLITELK 142 (887)
T ss_pred cCceEEEEecCCCccchhhhhhhhhhhcCCcEEEE-----eeccccchhHH-HHHHHHHHccCceEEEEehhhhHHHHHh
Confidence 112358899999987 122211 24554544 23445444432 1235455678899999999997766654
Q ss_pred C
Q psy9643 247 V 247 (412)
Q Consensus 247 ~ 247 (412)
.
T Consensus 143 l 143 (887)
T KOG0467|consen 143 L 143 (887)
T ss_pred c
Confidence 3
No 108
>PRK13351 elongation factor G; Reviewed
Probab=98.56 E-value=2.1e-08 Score=109.81 Aligned_cols=127 Identities=23% Similarity=0.314 Sum_probs=75.6
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD 172 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~ 172 (412)
.+||+++||+|||||||+.+| ++. |..... ..++. -.+.+|..+.|+++|+++.+.... +.+.
T Consensus 8 irni~iiG~~~~GKTtL~~~l---l~~~g~~~~~--~~v~~-~~~~~d~~~~e~~r~~ti~~~~~~----------~~~~ 71 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERI---LFYTGKIHKM--GEVED-GTTVTDWMPQEQERGITIESAATS----------CDWD 71 (687)
T ss_pred ccEEEEECCCCCcchhHHHHH---HHhcCCcccc--ccccC-CcccCCCCHHHHhcCCCcccceEE----------EEEC
Confidence 789999999999999999999 443 322111 11111 134567777889999999765533 2232
Q ss_pred CCCCccccCCCCCce--eEEEE---eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643 173 TIPYFPVSTVPGHKG--QLVFG---LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP 243 (412)
Q Consensus 173 ~~~~~~i~d~pGH~~--~l~~G---~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~ 243 (412)
...+.++|+|||.+ ..... ..++. ++++.... |.... ....+..+...+++.++++||++..+.
T Consensus 72 -~~~i~liDtPG~~df~~~~~~~l~~aD~~-ilVvd~~~----~~~~~-~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 72 -NHRINLIDTPGHIDFTGEVERSLRVLDGA-VVVFDAVT----GVQPQ-TETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred -CEEEEEEECCCcHHHHHHHHHHHHhCCEE-EEEEeCCC----CCCHH-HHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 23578899999965 11111 12222 22322111 11111 111235677889999999999987653
No 109
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=7.9e-08 Score=99.56 Aligned_cols=107 Identities=29% Similarity=0.367 Sum_probs=63.3
Q ss_pred EEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC--CC
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD--TI 174 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~--~~ 174 (412)
+.+.||||||||||.+.| -.. .+ ...-.-|||.--|-+ .+++. +.
T Consensus 8 VtimGHVDHGKTtLLD~I---R~t-~V-------------------a~~EaGGITQhIGA~----------~v~~~~~~~ 54 (509)
T COG0532 8 VTIMGHVDHGKTTLLDKI---RKT-NV-------------------AAGEAGGITQHIGAY----------QVPLDVIKI 54 (509)
T ss_pred EEEeCcccCCccchhhhH---hcC-cc-------------------ccccCCceeeEeeeE----------EEEeccCCC
Confidence 468999999999999999 111 00 011124566533332 23444 56
Q ss_pred CCccccCCCCCce--eEEE-E-eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643 175 PYFPVSTVPGHKG--QLVF-G-LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241 (412)
Q Consensus 175 ~~~~i~d~pGH~~--~l~~-G-~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l 241 (412)
|.++++|+|||.. +|.. | .+-+..+++.. .-+|.-|++ .-++..++.+|++-+|++||++-.
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa----~dDGv~pQT-iEAI~hak~a~vP~iVAiNKiDk~ 120 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVA----ADDGVMPQT-IEAINHAKAAGVPIVVAINKIDKP 120 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEE----ccCCcchhH-HHHHHHHHHCCCCEEEEEecccCC
Confidence 8899999999965 2222 1 12222222221 111222222 124589999999999999999865
No 110
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.40 E-value=6.7e-08 Score=88.73 Aligned_cols=128 Identities=19% Similarity=0.250 Sum_probs=67.0
Q ss_pred eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc---cCceeeec
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI---TDRHIFPY 171 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~---~~~~~~~~ 171 (412)
+||+++||+|+|||||+.+|+.. +. .+..++...+.++|++.+.++..+.-.. .+.....-
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~---~~-------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~ 64 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEI---AS-------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPG 64 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhc---cc-------------hhhhccCHHHHHcCCeeeecceEEEeccccccccccccc
Confidence 69999999999999999999432 10 0123333345667888877665431000 00000000
Q ss_pred CCCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643 172 DTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP 243 (412)
Q Consensus 172 ~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~ 243 (412)
.+...+.+.|+|||.+ .++.+.-. ...++++.... |...... .....+..++++.+++.||+|.++.
T Consensus 65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~----~~~~~~~-~~~~~~~~~~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATK----GIQTQTA-ECLVIGEILCKKLIVVLNKIDLIPE 135 (192)
T ss_pred ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC----CccHHHH-HHHHHHHHcCCCEEEEEECcccCCH
Confidence 1133578899999954 22221111 12223322111 1011110 0124456678888889999997643
No 111
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.40 E-value=9.4e-08 Score=90.64 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=67.7
Q ss_pred EEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCc--cccccc---------c-
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGL--STIADS---------I- 163 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl--~~~~~~---------~- 163 (412)
|+++||+++|||||+++++...+. +....+ --+++...|.++|++.-... ..+.+. .
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~----------~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~ 71 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKAR----------LNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHL 71 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEE----------eehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCcc
Confidence 689999999999999999754443 211110 01234445666777742111 001100 0
Q ss_pred cCc--eeeecCCCCCccccCCCCCce---eEEEEee---CCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEE
Q psy9643 164 TDR--HIFPYDTIPYFPVSTVPGHKG---QLVFGLI---NGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLAT 235 (412)
Q Consensus 164 ~~~--~~~~~~~~~~~~i~d~pGH~~---~l~~G~~---~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~ 235 (412)
... ..+.. .-..+.++|+|||.+ +++.|.. ....++++... +|..+ .....+..+..+|++.++++
T Consensus 72 ~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~----~g~~~-~d~~~l~~l~~~~ip~ivvv 145 (224)
T cd04165 72 SESDIEICEK-SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAAN----AGIIG-MTKEHLGLALALNIPVFVVV 145 (224)
T ss_pred ccccceeeee-CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECC----CCCcH-HHHHHHHHHHHcCCCEEEEE
Confidence 000 01111 234578999999965 3444432 12223333211 01110 01112367888999999999
Q ss_pred eccCCCC
Q psy9643 236 NAAGGLN 242 (412)
Q Consensus 236 n~~G~l~ 242 (412)
|++|.++
T Consensus 146 NK~D~~~ 152 (224)
T cd04165 146 TKIDLAP 152 (224)
T ss_pred ECccccC
Confidence 9999764
No 112
>KOG1145|consensus
Probab=98.37 E-value=2.6e-07 Score=95.58 Aligned_cols=112 Identities=27% Similarity=0.316 Sum_probs=61.2
Q ss_pred EEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCC
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPY 176 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~ 176 (412)
+-+.||||||||||.+.|-+. .+- | .--=|||..-|-+. ..+| +-..
T Consensus 156 VTiMGHVDHGKTTLLD~lRks----~VA---------A----------~E~GGITQhIGAF~--------V~~p--~G~~ 202 (683)
T KOG1145|consen 156 VTIMGHVDHGKTTLLDALRKS----SVA---------A----------GEAGGITQHIGAFT--------VTLP--SGKS 202 (683)
T ss_pred EEEeecccCChhhHHHHHhhC----cee---------h----------hhcCCccceeceEE--------EecC--CCCE
Confidence 346899999999999999211 000 0 01136776554432 1223 2245
Q ss_pred ccccCCCCCce--eEE-EEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCC
Q psy9643 177 FPVSTVPGHKG--QLV-FGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEV 247 (412)
Q Consensus 177 ~~i~d~pGH~~--~l~-~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~ 247 (412)
+++.|+|||.. .|. .|. +...++++- .-+-.|.-| +++-+|..++..+|+.||.+|+++ .|+..|
T Consensus 203 iTFLDTPGHaAF~aMRaRGA-~vtDIvVLV--VAadDGVmp-QT~EaIkhAk~A~VpiVvAinKiD--kp~a~p 270 (683)
T KOG1145|consen 203 ITFLDTPGHAAFSAMRARGA-NVTDIVVLV--VAADDGVMP-QTLEAIKHAKSANVPIVVAINKID--KPGANP 270 (683)
T ss_pred EEEecCCcHHHHHHHHhccC-ccccEEEEE--EEccCCccH-hHHHHHHHHHhcCCCEEEEEeccC--CCCCCH
Confidence 68899999964 221 121 122222220 000111111 222356899999999999999998 444433
No 113
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.33 E-value=8.6e-08 Score=86.15 Aligned_cols=125 Identities=18% Similarity=0.191 Sum_probs=64.7
Q ss_pred eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec---
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY--- 171 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~--- 171 (412)
.||+++||+++|||||+.+|++.. +......+ ..+..+..+.++.+|++..+.. ....|
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~--~~~~~~~~------~~~~~~~~~~~~~~g~t~~~~~----------~~~~~~~~ 62 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELT--GTVSKREM------KEQVLDSMDLERERGITIKAQT----------VRLNYKAK 62 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHh--CCCCcCCC------ceEeccCChhHHHCCCeEecce----------EEEEEecC
Confidence 499999999999999999994321 22211100 1233455555677788763321 11222
Q ss_pred C-CCCCccccCCCCCce--eEEEEeeCCeE--EEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 172 D-TIPYFPVSTVPGHKG--QLVFGLINGIP--IMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 172 ~-~~~~~~i~d~pGH~~--~l~~G~~~g~~--vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
. ....+.+.|+|||.+ .+..-.+.+.. ++++...... ..... ...+.+...++..+++.||+|..+
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~----~~~~~-~~~~~~~~~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGV----EAQTL-ANFYLALENNLEIIPVINKIDLPS 133 (179)
T ss_pred CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCc----cHhhH-HHHHHHHHcCCCEEEEEECCCCCc
Confidence 1 122356899999964 11111122222 2222211100 00000 012344457888899999999654
No 114
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.33 E-value=8.7e-08 Score=92.98 Aligned_cols=126 Identities=15% Similarity=0.212 Sum_probs=69.1
Q ss_pred eEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI 174 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~ 174 (412)
||+++||.++|||||+.+| ++. |..... ..+.. ..++.|..+.++++++++.+.+.. +.+.+
T Consensus 1 ni~ivG~~gsGKStL~~~L---l~~~g~~~~~--g~v~~-g~~~~d~~~~e~~r~~ti~~~~~~----------~~~~~- 63 (268)
T cd04170 1 NIALVGHSGSGKTTLAEAL---LYATGAIDRL--GSVED-GTTVSDYDPEEIKRKMSISTSVAP----------LEWKG- 63 (268)
T ss_pred CEEEECCCCCCHHHHHHHH---HHhcCCCccC--CeecC-CcccCCCCHHHHhhcccccceeEE----------EEECC-
Confidence 8999999999999999999 443 221110 01110 123445555567788887554322 23322
Q ss_pred CCccccCCCCCce--eEEEEeeC--CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643 175 PYFPVSTVPGHKG--QLVFGLIN--GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP 243 (412)
Q Consensus 175 ~~~~i~d~pGH~~--~l~~G~~~--g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~ 243 (412)
..+.++|+|||.+ ......+. ...++++.... |.... .......+...|++.++++|+++..+.
T Consensus 64 ~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~----g~~~~-~~~~~~~~~~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 64 HKINLIDTPGYADFVGETRAALRAADAALVVVSAQS----GVEVG-TEKLWEFADEAGIPRIIFINKMDRERA 131 (268)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCC----CCCHH-HHHHHHHHHHcCCCEEEEEECCccCCC
Confidence 2468899999964 10111111 12233332111 11111 111224667889999999999997654
No 115
>PRK12740 elongation factor G; Reviewed
Probab=98.33 E-value=1.2e-07 Score=103.57 Aligned_cols=121 Identities=21% Similarity=0.235 Sum_probs=71.5
Q ss_pred eecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCcc
Q psy9643 100 IGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFP 178 (412)
Q Consensus 100 igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~ 178 (412)
+||+|||||||+++| ++. |.+... .+++. ..+++|..+.|+++||++++.... +.+.+ ..+.
T Consensus 1 ig~~~~GKTTL~~~L---l~~~g~i~~~--~~~~~-~~~~~d~~~~e~~rgiTi~~~~~~----------~~~~~-~~i~ 63 (668)
T PRK12740 1 VGHSGAGKTTLTEAI---LFYTGAIHRI--GEVED-GTTTMDFMPEERERGISITSAATT----------CEWKG-HKIN 63 (668)
T ss_pred CCCCCCcHHHHHHHH---HHhcCCCccC--ccccC-CcccCCCChHHHhcCCCeeeceEE----------EEECC-EEEE
Confidence 699999999999999 554 433221 11111 136788888999999999765433 23332 3478
Q ss_pred ccCCCCCce---eEEEEee-CCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 179 VSTVPGHKG---QLVFGLI-NGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 179 i~d~pGH~~---~l~~G~~-~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
++|+|||.+ ....+.. ....++++.... |..... ...+..+...|++.+|+.|+++..+
T Consensus 64 liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~----~~~~~~-~~~~~~~~~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 64 LIDTPGHVDFTGEVERALRVLDGAVVVVCAVG----GVEPQT-ETVWRQAEKYGVPRIIFVNKMDRAG 126 (668)
T ss_pred EEECCCcHHHHHHHHHHHHHhCeEEEEEeCCC----CcCHHH-HHHHHHHHHcCCCEEEEEECCCCCC
Confidence 899999964 1111111 122233332211 111110 0123566778999999999999765
No 116
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.27 E-value=3.9e-07 Score=100.42 Aligned_cols=110 Identities=25% Similarity=0.297 Sum_probs=62.6
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDT 173 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~ 173 (412)
..+|+++||+|||||||+.+|.+ . .+ ......||+...|.+.+ .+..
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~Lr~---~-~v-------------------~~~e~~GIT~~iga~~v----------~~~~ 336 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDAIRK---T-NV-------------------AAGEAGGITQHIGAYQV----------ETNG 336 (787)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh---C-Cc-------------------cccccCceeeeccEEEE----------EECC
Confidence 56899999999999999999932 1 10 00113577776554332 2222
Q ss_pred CCCccccCCCCCce--eEE-EEee-CCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 174 IPYFPVSTVPGHKG--QLV-FGLI-NGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 174 ~~~~~i~d~pGH~~--~l~-~G~~-~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
..++++|+|||.+ .+. .|.- .+..++++... +|..+.. ...+..++.+|+..||++|++|..+
T Consensus 337 -~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAd----dGv~~qT-~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 337 -GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAAD----DGVMPQT-IEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred -EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECC----CCCCHhH-HHHHHHHHhcCCcEEEEEECccccc
Confidence 2468899999975 111 1211 11223332111 1111111 1123678889999999999999754
No 117
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.21 E-value=9.8e-07 Score=94.74 Aligned_cols=110 Identities=23% Similarity=0.262 Sum_probs=60.8
Q ss_pred eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI 174 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~ 174 (412)
..|+++||+|||||||..+|.+.- . ......||+...|... +.+.+.
T Consensus 88 p~V~I~Ghvd~GKTSLl~~l~~~~----v-------------------~~~e~~GIT~~ig~~~----------v~~~~~ 134 (587)
T TIGR00487 88 PVVTIMGHVDHGKTSLLDSIRKTK----V-------------------AQGEAGGITQHIGAYH----------VENEDG 134 (587)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC----c-------------------ccccCCceeecceEEE----------EEECCC
Confidence 578999999999999999993210 0 0011246666544322 223222
Q ss_pred CCccccCCCCCce--eE-EEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 175 PYFPVSTVPGHKG--QL-VFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 175 ~~~~i~d~pGH~~--~l-~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
..+.+.|+|||.+ .+ ..|.-. +..++++... +|..+.. ...+..++..+++.|++.||+|..+
T Consensus 135 ~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~----dgv~~qT-~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 135 KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAAD----DGVMPQT-IEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECC----CCCCHhH-HHHHHHHHHcCCCEEEEEECccccc
Confidence 2578999999975 11 122111 1222332110 0111111 1123677889999999999999743
No 118
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.11 E-value=2.4e-06 Score=85.29 Aligned_cols=155 Identities=16% Similarity=0.235 Sum_probs=82.9
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhhhcc-ccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccc---ccccccCc
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITKGLM-EGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLST---IADSITDR 166 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~-~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~---~~~~~~~~ 166 (412)
-++|+++++.||||||||||+|.|+..-. +|.-..+.+-..++ ..+..-.......++.+-.+ +. +.+.+.+.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~k--HEverGlsa~iS~~v~Gf~d-gk~~rlknPld~a 190 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQK--HEVERGLSADISLRVYGFDD-GKVVRLKNPLDEA 190 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhh--HHHhhccccceeEEEEEecC-CceEeecCcccHH
Confidence 45699999999999999999999942222 24333343322211 11222222233344443222 11 11111111
Q ss_pred eee-ecCCC-CCccccCCCCCce---eEEEEeeCCe-----EEEEe------cceeeeecCCCCccccHHHHHHHHcCCC
Q psy9643 167 HIF-PYDTI-PYFPVSTVPGHKG---QLVFGLINGI-----PIMCM------QGRFHYYEGYPLWKCAMPIRVMKLVGVT 230 (412)
Q Consensus 167 ~~~-~~~~~-~~~~i~d~pGH~~---~l~~G~~~g~-----~vv~~------qgr~H~yeg~~~~~v~~~i~ll~~lGv~ 230 (412)
... -.+.. +-+.++|+-||.- .-+.|-++-+ -+|.. .||+|+ -++-.++.+
T Consensus 191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHL-------------gi~~a~~lP 257 (527)
T COG5258 191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHL-------------GIALAMELP 257 (527)
T ss_pred HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhh-------------hhhhhhcCC
Confidence 000 01111 2346789999964 2222322211 11111 389998 688889999
Q ss_pred EEEEEeccCCCCCCCCCccHHHHHHHHhhcc
Q psy9643 231 HLLATNAAGGLNPDYEVGDIMIIKDHINLMG 261 (412)
Q Consensus 231 ~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~ 261 (412)
.|+++.+++-...+--.|-.-.+...+...+
T Consensus 258 viVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~ 288 (527)
T COG5258 258 VIVVVTKIDMVPDDRFQGVVEEISALLKRVG 288 (527)
T ss_pred EEEEEEecccCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999987665544454455666666644
No 119
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.10 E-value=2.4e-06 Score=93.55 Aligned_cols=113 Identities=26% Similarity=0.340 Sum_probs=63.1
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC-
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD- 172 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~- 172 (412)
..+|+++||+|||||||+.+|++ ... ......|++...|.+.+ .+.+.
T Consensus 244 ~p~V~IvGhvdvGKTSLld~L~~---~~~--------------------~~~e~~GiTq~i~~~~v--------~~~~~~ 292 (742)
T CHL00189 244 PPIVTILGHVDHGKTTLLDKIRK---TQI--------------------AQKEAGGITQKIGAYEV--------EFEYKD 292 (742)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh---ccC--------------------ccccCCccccccceEEE--------EEEecC
Confidence 56899999999999999999932 100 01122466654443321 12221
Q ss_pred CCCCccccCCCCCce--eEE-EEee-CCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 173 TIPYFPVSTVPGHKG--QLV-FGLI-NGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 173 ~~~~~~i~d~pGH~~--~l~-~G~~-~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
+...+.++|+|||.. .+. .|.- ....++++... +|..+.. ...+..++..++..|+++|++|..+
T Consensus 293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~----dGv~~QT-~E~I~~~k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAAD----DGVKPQT-IEAINYIQAANVPIIVAINKIDKAN 361 (742)
T ss_pred CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECc----CCCChhh-HHHHHHHHhcCceEEEEEECCCccc
Confidence 224578899999964 111 1211 11222332111 1111111 1134677889999899999999765
No 120
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.09 E-value=1.8e-06 Score=79.33 Aligned_cols=125 Identities=21% Similarity=0.248 Sum_probs=66.8
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccccccc-hhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLG-SYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD 172 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~-~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~ 172 (412)
..||+++||.++|||||+.+|+.. .+... .+.. ..++++..+.++.+|++..... ..+.+.
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~--~~~~~~~~~~------~~~~~~~~~~e~~~g~t~~~~~----------~~~~~~ 63 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQ--SGTFRENEEV------EERVMDSNDLERERGITILAKN----------TAVTYK 63 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHH--cCCCCccCcc------cccccccchhHHhcccccccce----------eEEEEC
Confidence 469999999999999999999431 01111 1100 1244555666777888763321 122222
Q ss_pred CCCCccccCCCCCce--eEEEEeeCCeE--EEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 173 TIPYFPVSTVPGHKG--QLVFGLINGIP--IMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 173 ~~~~~~i~d~pGH~~--~l~~G~~~g~~--vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
...+.+.|+|||.+ .+....+.+.. +++....... .+. ...-+..+...+++.+|+.||+|..+
T Consensus 64 -~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~----~~~-~~~~~~~~~~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 64 -DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP----MPQ-TRFVLKKALELGLKPIVVINKIDRPD 131 (194)
T ss_pred -CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc----cHH-HHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 23468899999964 11111112221 2222211110 011 00112334557899999999999764
No 121
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.81 E-value=1.3e-05 Score=86.21 Aligned_cols=20 Identities=55% Similarity=0.785 Sum_probs=18.5
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
.|+++||+|||||||..+|.
T Consensus 8 ~V~i~Gh~~~GKTSLl~~l~ 27 (586)
T PRK04004 8 IVVVLGHVDHGKTTLLDKIR 27 (586)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999994
No 122
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.75 E-value=1.5e-05 Score=85.68 Aligned_cols=20 Identities=55% Similarity=0.846 Sum_probs=18.2
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
-|+++||+|||||||..+|+
T Consensus 6 iV~IiG~~d~GKTSLln~l~ 25 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIR 25 (590)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999994
No 123
>KOG0468|consensus
Probab=97.65 E-value=2.4e-05 Score=82.75 Aligned_cols=262 Identities=16% Similarity=0.133 Sum_probs=131.5
Q ss_pred cchhhccccccccccccccchhhhhccccCCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhh
Q psy9643 61 NDKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLD 140 (412)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~ 140 (412)
.-+|.+-+++..--..+.++++- .+...--.+|++++||-.||||++++.|...-. .+ +.+-.++.-...|
T Consensus 98 ~~k~q~~~~~~p~T~y~~~yl~~---l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tH---p~---~~~~~e~~lrytD 168 (971)
T KOG0468|consen 98 RLKFQIHERDVPETVYDLEYLAG---LMDNPERIRNVGLVGHLHHGKTALMDLLVEQTH---PD---FSKNTEADLRYTD 168 (971)
T ss_pred hhhhhhhhcccchhhhhHHHHHH---hccCcceEEEEEEeeccccChhHHHHhhceecc---cc---ccccccccccccc
Confidence 35677766663222244444442 445555578999999999999999999932111 00 1111111112255
Q ss_pred hcCCCCceeEeeCcCcccccccccCceeeecCC----CCCccccCCCCCce---eEEE--EeeCCeEEEEecceeeeecC
Q psy9643 141 SISIRPKIGIICGSGLSTIADSITDRHIFPYDT----IPYFPVSTVPGHKG---QLVF--GLINGIPIMCMQGRFHYYEG 211 (412)
Q Consensus 141 ~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~----~~~~~i~d~pGH~~---~l~~--G~~~g~~vv~~qgr~H~yeg 211 (412)
.+..|.+||+.+-+ .+.++-.++ ..-+++.|+|||.+ ++.. +..+|+-+++ . .-||
T Consensus 169 ~l~~E~eRg~sIK~----------~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvv-D----v~EG 233 (971)
T KOG0468|consen 169 TLFYEQERGCSIKS----------TPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVV-D----VAEG 233 (971)
T ss_pred cchhhHhcCceEee----------cceEEEEecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEE-E----cccC
Confidence 66678999999855 222222222 22368999999965 2222 2334443333 1 1122
Q ss_pred CCCccccHHHHHHHHcC---CCEEEEEeccCCCCCCC--CCccH--------HHHHHHHhhccCCCCCCCCCCCCCCCC-
Q psy9643 212 YPLWKCAMPIRVMKLVG---VTHLLATNAAGGLNPDY--EVGDI--------MIIKDHINLMGFAGNNPLLGVNEDRFG- 277 (412)
Q Consensus 212 ~~~~~v~~~i~ll~~lG---v~~II~~n~~G~l~~~~--~~Gd~--------vi~~d~i~~~~~~~~~pl~g~~~~~~g- 277 (412)
.....- ++++..+ ....+++||++.+--++ .|-|- -.++++|.... .+++|...+- .|
T Consensus 234 VmlntE----r~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~~iN~~is~~s-~~~~~~~sP~---~gN 305 (971)
T KOG0468|consen 234 VMLNTE----RIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDEINNLISTFS-KDDNPVVSPI---LGN 305 (971)
T ss_pred ceeeHH----HHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHHHhcchhhhcc-cccccccccc---cCc
Confidence 111111 5555544 34455689999765543 34442 12334443222 1233332211 11
Q ss_pred CCCCCCcccccHHHHHHHHHHHHHcCCC------cceeeceEEE-----EecCccCCHHHH---H-----HHHHcCCcEE
Q psy9643 278 PRFPPMNKAYNKQLRAATLDIARDLNMS------SIVKEGVYSV-----IGGPNFETVAEL---N-----MLRICGVDAV 338 (412)
Q Consensus 278 ~~~~~~~~~~d~~Lr~~~~~~a~~~g~~------~~~~~Gvy~~-----~~GP~feT~AE~---~-----~~~~~Gad~V 338 (412)
.+|.+-..-||..|...++--++..|-- .++..-+|.. +.+-.+...+.. + ++ +++..++
T Consensus 306 vcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~~~~rsFVeFILePlY-Ki~sq~i 384 (971)
T KOG0468|consen 306 VCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDGSGSRSFVEFILEPLY-KIFSQVI 384 (971)
T ss_pred eeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCCCCCcccchhhhhhHhHHH-HHHHHHh
Confidence 3455555667777777777666665431 1222222221 112122222211 1 22 2457788
Q ss_pred eCchhHHHHHHHHcCCc
Q psy9643 339 GMSTVHEVITAHHCGMT 355 (412)
Q Consensus 339 gMe~~pEa~~A~~~Gi~ 355 (412)
||+--.+--+-.++|+.
T Consensus 385 gd~~~~l~~~l~e~~v~ 401 (971)
T KOG0468|consen 385 GDEKDSLKGLLAELGVR 401 (971)
T ss_pred cchhhhhhhhhhhhccc
Confidence 88877766666666664
No 124
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.55 E-value=4.4e-05 Score=66.90 Aligned_cols=22 Identities=64% Similarity=0.899 Sum_probs=19.9
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+||+++|+.++|||||..+|++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhC
Confidence 4899999999999999999953
No 125
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.19 E-value=0.00021 Score=64.09 Aligned_cols=22 Identities=59% Similarity=0.842 Sum_probs=19.8
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
||+++|..++|||||+.+|++.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~ 22 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYV 22 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHh
Confidence 6899999999999999999544
No 126
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.99 E-value=0.00069 Score=70.19 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.3
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+++.++|+++||.++|||||+.+|+
T Consensus 170 ~~~~~~v~ivG~~n~GKStlin~ll 194 (435)
T PRK00093 170 EDEPIKIAIIGRPNVGKSSLINALL 194 (435)
T ss_pred cccceEEEEECCCCCCHHHHHHHHh
Confidence 3457999999999999999999993
No 127
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.89 E-value=0.002 Score=56.73 Aligned_cols=20 Identities=55% Similarity=0.826 Sum_probs=18.3
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
.|+++|+.++|||||+.+|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~ 21 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIR 21 (168)
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 38999999999999999994
No 128
>PLN03127 Elongation factor Tu; Provisional
Probab=96.73 E-value=0.0017 Score=67.81 Aligned_cols=102 Identities=32% Similarity=0.491 Sum_probs=66.9
Q ss_pred ecCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCCCCCcc---Cccc--cchhhcccccccccccccc
Q psy9643 6 IDAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGII---PLYP--NDKFEINKLNVFVPLINSR 79 (412)
Q Consensus 6 ~d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~ 79 (412)
+|+. ++++.++++.|++++|..++|+++++|+|.+||+.|+++++.+.+.. .++. ++....++++ .+++
T Consensus 187 iDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~-----~~~p 261 (447)
T PLN03127 187 VDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRV-----LDKP 261 (447)
T ss_pred eccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcc-----cccc
Confidence 3884 67899999999999999999999999999999999998765433322 2221 2221222222 4556
Q ss_pred chhhhhccccCCCCeeeEEeeecccCCChhhhhHH
Q psy9643 80 RGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 80 ~~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l 114 (412)
+.|++.++++-.- +-.++.|-|-+|+=..-..+
T Consensus 262 fr~~I~~vf~v~g--~GtVvtG~v~~G~i~~Gd~v 294 (447)
T PLN03127 262 FLMPIEDVFSIQG--RGTVATGRVEQGTIKVGEEV 294 (447)
T ss_pred eEeeEEEEEEcCC--ceEEEEEEEEccEEecCCEE
Confidence 7777777764322 22356777777754444444
No 129
>KOG1144|consensus
Probab=96.65 E-value=0.0032 Score=67.92 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=39.5
Q ss_pred CCCCccccCCCCCce--eE-EEEee-CCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 173 TIPYFPVSTVPGHKG--QL-VFGLI-NGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 173 ~~~~~~i~d~pGH~~--~l-~~G~~-~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
.+|++-++|+|||.. ++ ..|.. -...+++. --+|..| |.+ .-.+.+++.-.++-||..|+++.|-
T Consensus 538 kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvv-dImhGle---pqt-iESi~lLR~rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 538 KVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVV-DIMHGLE---PQT-IESINLLRMRKTPFIVALNKIDRLY 606 (1064)
T ss_pred CCCeeEEecCCCchhhhhhhhccccccceEEEEe-ehhccCC---cch-hHHHHHHHhcCCCeEEeehhhhhhc
Confidence 578999999999964 22 22321 12223322 2234333 221 1234788888899999999999764
No 130
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.60 E-value=0.003 Score=57.15 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.4
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
....+|+++|+.++|||||+.+|+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~ 39 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALT 39 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHh
Confidence 346799999999999999999994
No 131
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.58 E-value=0.0035 Score=54.90 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.8
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.++|+++|+.++||||++.+|++
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~ 24 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLG 24 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhC
Confidence 57899999999999999999954
No 132
>PRK12736 elongation factor Tu; Reviewed
Probab=96.52 E-value=0.0024 Score=65.67 Aligned_cols=101 Identities=31% Similarity=0.477 Sum_probs=67.2
Q ss_pred cCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCCCC-CccCccc--cchhhccccccccccccccchh
Q psy9643 7 DAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEI-GIIPLYP--NDKFEINKLNVFVPLINSRRGY 82 (412)
Q Consensus 7 d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 82 (412)
|+. ++++.+.++.|++++|.+++|++++.||+..||+...++..+|+ +.+.++. ++....++++ .++++.|
T Consensus 139 D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~-----~~~p~r~ 213 (394)
T PRK12736 139 DLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERD-----TDKPFLM 213 (394)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCC-----CCCCeEE
Confidence 884 67899999999999999999998999999999999876655554 3444442 2222222222 3456667
Q ss_pred hhhccccCCCCeeeEEeeecccCCChhhhhHH
Q psy9643 83 AEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 83 ~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l 114 (412)
++-+++.-. -+-.++.|-|-+|+=+.-..+
T Consensus 214 ~I~~~~~~~--g~G~Vv~G~v~~G~l~~gd~v 243 (394)
T PRK12736 214 PVEDVFTIT--GRGTVVTGRVERGTVKVGDEV 243 (394)
T ss_pred EEEEEEecC--CcEEEEEEEEeecEEecCCEE
Confidence 766666432 233356777777755444444
No 133
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.49 E-value=0.0031 Score=65.10 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.5
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+..++|+++||.++|||||+.+|+
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~ 193 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALL 193 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 346899999999999999999994
No 134
>PLN03126 Elongation factor Tu; Provisional
Probab=96.40 E-value=0.0028 Score=66.73 Aligned_cols=101 Identities=31% Similarity=0.455 Sum_probs=63.5
Q ss_pred cCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCC----------CCCCC-ccCccc--cchhhccccccc
Q psy9643 7 DAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGK----------EPEIG-IIPLYP--NDKFEINKLNVF 72 (412)
Q Consensus 7 d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~----------~~~~~-~~~~~~--~~~~~~~~~~~~ 72 (412)
|+. +++..+.++.|++++|.++||++++.|+|.+||+.+.+.- .+|+. ...++. ++-..+++++
T Consensus 208 Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~-- 285 (478)
T PLN03126 208 DQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQ-- 285 (478)
T ss_pred cccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCc--
Confidence 874 5788999999999999999999999999999999886431 12221 112221 1111123332
Q ss_pred cccccccchhhhhccccCCCCeeeEEeeecccCCChhhhhHH
Q psy9643 73 VPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l 114 (412)
.++++.|++.++++-.. +-.++.|.|-+|+=..-..+
T Consensus 286 ---~~~p~r~~I~~vf~v~g--~GtVv~G~V~sG~i~~Gd~v 322 (478)
T PLN03126 286 ---TDLPFLLAVEDVFSITG--RGTVATGRVERGTVKVGETV 322 (478)
T ss_pred ---cccceeeEEEEEEEeCC--ceEEEEEEEEcCeEecCCEE
Confidence 34567788777775322 23356788888854433333
No 135
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.25 E-value=0.0088 Score=51.91 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=17.4
Q ss_pred HHHHcCCCEEEEEeccCCCCCC
Q psy9643 223 VMKLVGVTHLLATNAAGGLNPD 244 (412)
Q Consensus 223 ll~~lGv~~II~~n~~G~l~~~ 244 (412)
.+...++..+++.|++|..+..
T Consensus 96 ~~~~~~~~~iiv~NK~Dl~~~~ 117 (158)
T cd01879 96 QLLELGLPVVVALNMIDEAEKR 117 (158)
T ss_pred HHHHcCCCEEEEEehhhhcccc
Confidence 4566899999999999986643
No 136
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.18 E-value=0.0044 Score=63.67 Aligned_cols=97 Identities=33% Similarity=0.466 Sum_probs=63.0
Q ss_pred ecCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCCCCC-ccCccc--cchhhccccccccccccccch
Q psy9643 6 IDAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIG-IIPLYP--NDKFEINKLNVFVPLINSRRG 81 (412)
Q Consensus 6 ~d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 81 (412)
+|+. +++..+.++.|++++|.+++|++++.|++.+||+.+.++.++|+. ...++. ++....++++ .++++.
T Consensus 138 ~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~-----~~~p~r 212 (394)
T TIGR00485 138 CDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERE-----TDKPFL 212 (394)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCC-----CCCCeE
Confidence 3885 577889999999999999999999999999999998776655542 333432 2222223332 345566
Q ss_pred hhhhccccCCCCeeeEEeeecccCCChh
Q psy9643 82 YAEKQVYSRDKPHCNIGTIGHVDHGKTT 109 (412)
Q Consensus 82 ~~~~~~~~~~k~~~ni~~igHVD~GKST 109 (412)
|++-++++-.- +-.++.|-|-+|+=.
T Consensus 213 ~~V~~vf~~~g--~G~Vv~G~v~~G~l~ 238 (394)
T TIGR00485 213 MPIEDVFSITG--RGTVVTGRVERGIVK 238 (394)
T ss_pred EEEEEEEeeCC--ceEEEEEEEEeeEEe
Confidence 67666664322 223456666666433
No 137
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.06 E-value=0.0026 Score=54.99 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=18.2
Q ss_pred HHHHHcCCCEEEEEeccCCCCCC
Q psy9643 222 RVMKLVGVTHLLATNAAGGLNPD 244 (412)
Q Consensus 222 ~ll~~lGv~~II~~n~~G~l~~~ 244 (412)
..++..+.+.+++.|+++..++.
T Consensus 99 ~~~~~~~~piiiv~nK~D~~~~~ 121 (157)
T cd01894 99 KYLRKSKKPVILVVNKVDNIKEE 121 (157)
T ss_pred HHHHhcCCCEEEEEECcccCChH
Confidence 56677888899999999886643
No 138
>COG1159 Era GTPase [General function prediction only]
Probab=95.99 E-value=0.014 Score=57.27 Aligned_cols=115 Identities=16% Similarity=0.204 Sum_probs=60.9
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDT 173 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~ 173 (412)
..=++++|-...|||||+.+|.|.-- ..++.+ . .+.-.+-+||... +.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Ki-sIvS~k----~---------QTTR~~I~GI~t~-----------~~------- 53 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKI-SIVSPK----P---------QTTRNRIRGIVTT-----------DN------- 53 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCce-EeecCC----c---------chhhhheeEEEEc-----------CC-------
Confidence 34578999999999999999943210 111110 0 1111344677651 11
Q ss_pred CCCccccCCCC-Cce---------eEEEEeeCCeEEEEec-ceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 174 IPYFPVSTVPG-HKG---------QLVFGLINGIPIMCMQ-GRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 174 ~~~~~i~d~pG-H~~---------~l~~G~~~g~~vv~~q-gr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
.++-.+|+|| |.. +-....+.++.++++- ...+. ..+.. .+-+..++....+.|+++|+++.+.
T Consensus 54 -~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~---~~~~d-~~il~~lk~~~~pvil~iNKID~~~ 128 (298)
T COG1159 54 -AQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG---WGPGD-EFILEQLKKTKTPVILVVNKIDKVK 128 (298)
T ss_pred -ceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc---CCccH-HHHHHHHhhcCCCeEEEEEccccCC
Confidence 1234568888 643 1122245666665541 11111 11111 1112444555678889999999887
Q ss_pred CCC
Q psy9643 243 PDY 245 (412)
Q Consensus 243 ~~~ 245 (412)
++.
T Consensus 129 ~~~ 131 (298)
T COG1159 129 PKT 131 (298)
T ss_pred cHH
Confidence 664
No 139
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=95.97 E-value=0.02 Score=63.77 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=21.0
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.++|+++||.++|||||..+|++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg 25 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTG 25 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999965
No 140
>PRK12735 elongation factor Tu; Reviewed
Probab=95.89 E-value=0.0087 Score=61.57 Aligned_cols=101 Identities=32% Similarity=0.456 Sum_probs=63.5
Q ss_pred cCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCC--CCC-CccCccc--cchhhccccccccccccccc
Q psy9643 7 DAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE--PEI-GIIPLYP--NDKFEINKLNVFVPLINSRR 80 (412)
Q Consensus 7 d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~--~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 80 (412)
|+. ++++.+.++.|++++|.+|+|++++.|++..||+.+.+... +|+ +...++. ++....++++ .++++
T Consensus 139 Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~-----~~~p~ 213 (396)
T PRK12735 139 DMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERA-----IDKPF 213 (396)
T ss_pred CCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCcc-----CCCCe
Confidence 884 77899999999999999999999999999999988865422 222 2233332 2222223332 34456
Q ss_pred hhhhhccccCCCCeeeEEeeecccCCChhhhhHH
Q psy9643 81 GYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 81 ~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l 114 (412)
.|++-++++-. ..-.++.|-|-+|+=..-..+
T Consensus 214 r~~I~~~f~v~--g~Gtvv~G~v~~G~i~~gd~v 245 (396)
T PRK12735 214 LMPIEDVFSIS--GRGTVVTGRVERGIVKVGDEV 245 (396)
T ss_pred EEEEEEEEecC--CceEEEEEEEEecEEeCCCEE
Confidence 66666666432 223346677777754444333
No 141
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=95.80 E-value=0.025 Score=49.84 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.2
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
+|+++|+.++|||||+.+|++
T Consensus 2 ~i~~~G~~~~GKssli~~l~~ 22 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTR 22 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhc
Confidence 789999999999999999943
No 142
>PRK00049 elongation factor Tu; Reviewed
Probab=95.66 E-value=0.01 Score=61.09 Aligned_cols=102 Identities=32% Similarity=0.457 Sum_probs=65.6
Q ss_pred ecCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCC--CCCC-CccCccc--cchhhcccccccccccccc
Q psy9643 6 IDAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGK--EPEI-GIIPLYP--NDKFEINKLNVFVPLINSR 79 (412)
Q Consensus 6 ~d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~--~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~ 79 (412)
+|+. +++.++.++.|++++|.++||++++.||+..||+.+.+.. .+|+ +...++. ++....++++ .+++
T Consensus 138 ~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~-----~~~p 212 (396)
T PRK00049 138 CDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERA-----IDKP 212 (396)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCC-----CCCC
Confidence 3885 6788999999999999999999899999999999887532 1232 2334442 2222223322 4566
Q ss_pred chhhhhccccCCCCeeeEEeeecccCCChhhhhHH
Q psy9643 80 RGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 80 ~~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l 114 (412)
+.|++.+++.-. -.-.++.|-|-+|.-..-..+
T Consensus 213 ~r~~I~~~f~v~--g~G~Vv~G~v~~G~i~~gd~v 245 (396)
T PRK00049 213 FLMPIEDVFSIS--GRGTVVTGRVERGIIKVGEEV 245 (396)
T ss_pred eEEEEEEEEeeC--CceEEEEEEEeeeEEecCCEE
Confidence 777777776432 223356777777754444333
No 143
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.60 E-value=0.016 Score=53.82 Aligned_cols=42 Identities=62% Similarity=0.976 Sum_probs=38.1
Q ss_pred cC-CCHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcC
Q psy9643 7 DA-ADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEG 48 (412)
Q Consensus 7 d~-~d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~ 48 (412)
|. ++++..+.++.|++++|.++||+.++.|||..||+.+.+.
T Consensus 129 D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 129 DMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 87 5788999999999999999999989999999999988754
No 144
>CHL00071 tufA elongation factor Tu
Probab=95.40 E-value=0.015 Score=60.16 Aligned_cols=41 Identities=56% Similarity=0.909 Sum_probs=36.8
Q ss_pred cCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhc
Q psy9643 7 DAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE 47 (412)
Q Consensus 7 d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~ 47 (412)
|.. ++++.+.++.|++++|.+++|++++.|++.+||+.+.+
T Consensus 139 D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 139 DQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 885 57889999999999999999998889999999998863
No 145
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=94.97 E-value=0.044 Score=60.71 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+...+|+++|+.++|||||..+|+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~ 296 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRIL 296 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHh
Confidence 345679999999999999999994
No 146
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=94.73 E-value=0.029 Score=49.57 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.1
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
++|+++|+-++|||||+.+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~ 21 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFL 21 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999994
No 147
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=94.71 E-value=0.09 Score=44.49 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=15.5
Q ss_pred eeecccCCChhhhhHHh
Q psy9643 99 TIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 99 ~igHVD~GKSTl~~~l~ 115 (412)
++|+.++||||++.+|+
T Consensus 1 i~G~~gsGKstl~~~l~ 17 (163)
T cd00880 1 LFGRTNAGKSSLLNALL 17 (163)
T ss_pred CcCCCCCCHHHHHHHHh
Confidence 58999999999999994
No 148
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=94.53 E-value=0.035 Score=57.33 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=17.9
Q ss_pred EEeeecccCCChhhhhHHh
Q psy9643 97 IGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~ 115 (412)
|+++|+.++|||||..+|+
T Consensus 2 i~ivG~~nvGKStL~n~l~ 20 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLT 20 (429)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999994
No 149
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=94.51 E-value=0.051 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.7
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.++...|+++|+.++|||||+..|+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~ 60 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLV 60 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4556788999999999999999884
No 150
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=94.46 E-value=0.071 Score=49.50 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=18.5
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
+|+++|+.++|||||..+|.
T Consensus 2 ~vll~G~~~sGKTsL~~~l~ 21 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLT 21 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHh
Confidence 68999999999999999993
No 151
>KOG0463|consensus
Probab=93.95 E-value=0.038 Score=55.78 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=19.0
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+-++++|.||+|||||.|-|+.
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTH 155 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTH 155 (641)
T ss_pred EEEEEEecccCCcceeEeeeee
Confidence 4568999999999999998853
No 152
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=93.61 E-value=0.038 Score=48.54 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.3
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
||+++|+.++|||||..+|+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhh
Confidence 789999999999999999953
No 153
>PRK00093 GTP-binding protein Der; Reviewed
Probab=93.61 E-value=0.076 Score=54.99 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.5
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
.|+++|+.++|||||..+|+
T Consensus 3 ~I~ivG~~~vGKStL~n~l~ 22 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLT 22 (435)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999994
No 154
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.58 E-value=0.041 Score=46.68 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.6
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
++|+++|+.++|||||+.+|+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~ 22 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLL 22 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 689999999999999999994
No 155
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=93.54 E-value=0.57 Score=45.00 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.7
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
-.|+++|...+||||+..+|++.
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCC
Confidence 35899999999999999999876
No 156
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=93.36 E-value=0.04 Score=48.48 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=19.4
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
||+++|+.++|||||..+|++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~ 22 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISN 22 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999953
No 157
>PRK14845 translation initiation factor IF-2; Provisional
Probab=93.32 E-value=0.066 Score=61.27 Aligned_cols=120 Identities=21% Similarity=0.260 Sum_probs=63.6
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccccc-ccCce----
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADS-ITDRH---- 167 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~-~~~~~---- 167 (412)
++.|++.-|-+-| ||||.+.|.+. . ....-.-|||..-|.+.++-. ....+
T Consensus 461 ~~~~~~~~~~~~~-KTtLLD~iR~t---~--------------------v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~ 516 (1049)
T PRK14845 461 ETHNFIANGILVH-NTTLLDKIRKT---R--------------------VAKKEAGGITQHIGATEIPIDVIKKICGPLL 516 (1049)
T ss_pred ccCcceeeeeecc-cccHHHHHhCC---C--------------------cccccCCCceeccceEEEEeccccccccccc
Confidence 3556654444444 99999999321 0 111234688876666654321 11100
Q ss_pred -eeecC-CCCCccccCCCCCce--eE-EEEee-CCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643 168 -IFPYD-TIPYFPVSTVPGHKG--QL-VFGLI-NGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241 (412)
Q Consensus 168 -~~~~~-~~~~~~i~d~pGH~~--~l-~~G~~-~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l 241 (412)
..... .+|++.+.|+|||.. .+ ..+.. ....++++... +|..+. ..-.+..++..++..+++.||+|..
T Consensus 517 ~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~----~Gi~~q-T~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 517 KLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDIN----EGFKPQ-TIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred ccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECc----ccCCHh-HHHHHHHHHHcCCCEEEEEECCCCc
Confidence 01122 468899999999965 11 12211 11222232211 121221 1113467788899989999999965
No 158
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=93.23 E-value=0.095 Score=58.05 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.5
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.++|+++|+.++|||||+.+|+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~ 471 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLT 471 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 5799999999999999999994
No 159
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.11 E-value=0.061 Score=40.67 Aligned_cols=25 Identities=32% Similarity=0.231 Sum_probs=21.4
Q ss_pred eEEeeecccCCChhhhhHHhhhccc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLME 120 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~~ 120 (412)
+..+.|+.++||||+.+++.-.|+-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4579999999999999999766664
No 160
>PRK04213 GTP-binding protein; Provisional
Probab=92.95 E-value=0.13 Score=47.04 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.7
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..+|+++|..++|||||+.+|++
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~ 31 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTG 31 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 57899999999999999999943
No 161
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=92.65 E-value=0.08 Score=47.95 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.4
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
....+|+++|+.++|||||+.+|+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~ 45 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALT 45 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHh
Confidence 346789999999999999999994
No 162
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=92.46 E-value=0.075 Score=45.67 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.1
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
+.|+++|++++||||++.+|+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~ 22 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALA 22 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999994
No 163
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.40 E-value=0.075 Score=48.78 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.6
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++.++|+++|+.++|||||+.+|++
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~ 63 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTG 63 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhc
Confidence 3357999999999999999999943
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=92.28 E-value=0.15 Score=53.70 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=21.1
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..++|+++|+.++|||||+.+|+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~ 232 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLA 232 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 36899999999999999999994
No 165
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=92.14 E-value=0.12 Score=45.55 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=22.4
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.|...+|+++|+-++|||||+.+++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~ 28 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFT 28 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999999994
No 166
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.06 E-value=0.081 Score=50.66 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=19.9
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
||+|||.++|||||.+-|++++
T Consensus 56 vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 56 VGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred EEEECCCCCcHHHHHHHHhCcc
Confidence 7999999999999999997754
No 167
>KOG1143|consensus
Probab=91.95 E-value=0.11 Score=52.65 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=42.4
Q ss_pred ccccCCCCCce---eEEEEee---CC-eEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 177 FPVSTVPGHKG---QLVFGLI---NG-IPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 177 ~~i~d~pGH~~---~l~~G~~---~g-~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
++++|-.||.. .-+.|-. .. +.+++. .+|+|+ -++..|.+.-.+++.|++...
T Consensus 251 vTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHL-------------gl~~AL~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 251 VTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHL-------------GLIAALNIPFFVLVTKMDLVD 317 (591)
T ss_pred EEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHH-------------HHHHHhCCCeEEEEEeecccc
Confidence 57889999965 2223321 11 122222 378887 788999999999999999877
Q ss_pred CCCCCccHHHHHHHHhh
Q psy9643 243 PDYEVGDIMIIKDHINL 259 (412)
Q Consensus 243 ~~~~~Gd~vi~~d~i~~ 259 (412)
+. |---.++|.-++
T Consensus 318 ~~---~~~~tv~~l~nl 331 (591)
T KOG1143|consen 318 RQ---GLKKTVKDLSNL 331 (591)
T ss_pred ch---hHHHHHHHHHHH
Confidence 53 333345555554
No 168
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=91.82 E-value=0.11 Score=45.96 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.7
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...+.|+++|+.++|||||..+|++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~ 36 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLAS 36 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhc
Confidence 3378899999999999999999943
No 169
>COG2229 Predicted GTPase [General function prediction only]
Probab=91.76 E-value=0.33 Score=44.54 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.0
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
-.-|+++|-+|+||||.+++++.
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~ 32 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSD 32 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhc
Confidence 35689999999999999999953
No 170
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=91.73 E-value=0.37 Score=42.74 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.8
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
+.|+++|-.++|||||+.+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~ 21 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHL 21 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999993
No 171
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=91.56 E-value=0.09 Score=48.89 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.5
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+...||+++|+.++|||||+.+++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~ 43 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLI 43 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHH
Confidence 347899999999999999999994
No 172
>COG1084 Predicted GTPase [General function prediction only]
Probab=91.43 E-value=0.21 Score=49.82 Aligned_cols=128 Identities=18% Similarity=0.224 Sum_probs=69.3
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDT 173 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~ 173 (412)
...|+++|+.+.|||||+..||+.-.+ +..+.+ -..||.+|- +.+..
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpE--vA~YPF-----------------TTK~i~vGh--------------fe~~~ 214 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPE--VAPYPF-----------------TTKGIHVGH--------------FERGY 214 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCc--cCCCCc-----------------cccceeEee--------------eecCC
Confidence 456889999999999999999653221 211111 113455431 11111
Q ss_pred CCCccccCCCCCce----eEEE---------EeeCCeEEEEecceeeeecCCCCccccHHH-HHHHHcCCCEEEEEeccC
Q psy9643 174 IPYFPVSTVPGHKG----QLVF---------GLINGIPIMCMQGRFHYYEGYPLWKCAMPI-RVMKLVGVTHLLATNAAG 239 (412)
Q Consensus 174 ~~~~~i~d~pGH~~----~l~~---------G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i-~ll~~lGv~~II~~n~~G 239 (412)
. .+.++|+||-=| ++-. --++|..+.++.-..+. ||+......-. .+=..+....++++||+|
T Consensus 215 ~-R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~c--gy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D 291 (346)
T COG1084 215 L-RIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETC--GYSLEEQISLLEEIKELFKAPIVVVINKID 291 (346)
T ss_pred c-eEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcccc--CCCHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 1 457899999543 1100 01345555555544443 55555443222 223345566777899998
Q ss_pred CCCCCCCCccHHHHHHHHhhcc
Q psy9643 240 GLNPDYEVGDIMIIKDHINLMG 261 (412)
Q Consensus 240 ~l~~~~~~Gd~vi~~d~i~~~~ 261 (412)
-..+ .++-.+...+...+
T Consensus 292 ~~~~----e~~~~~~~~~~~~~ 309 (346)
T COG1084 292 IADE----EKLEEIEASVLEEG 309 (346)
T ss_pred ccch----hHHHHHHHHHHhhc
Confidence 7543 34555555555544
No 173
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=91.40 E-value=0.26 Score=43.50 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.9
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..++|+++|-.+.|||||+.+|.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~ 123 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLR 123 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHh
Confidence 46889999999999999999994
No 174
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=90.83 E-value=0.28 Score=44.59 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=21.6
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+..+.++++|....|||||+.+|++
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~ 139 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKR 139 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhC
Confidence 3357899999999999999999943
No 175
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=90.62 E-value=0.15 Score=44.77 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=18.5
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
|.++|+.++|||||+..|...
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999543
No 176
>PRK13948 shikimate kinase; Provisional
Probab=90.41 E-value=0.17 Score=46.42 Aligned_cols=29 Identities=21% Similarity=0.476 Sum_probs=25.5
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++.||+++|..++||||+...|...|.
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 67789999999999999999999976554
No 177
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=90.30 E-value=0.17 Score=46.31 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.5
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.+|.++|..++||||+++.|++.
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999765
No 178
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.12 E-value=0.15 Score=48.80 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.2
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++||.++|||||...|.+.+.
T Consensus 33 ~~i~G~nGsGKSTL~~~l~GLl~ 55 (235)
T COG1122 33 VLLIGPNGSGKSTLLKLLNGLLK 55 (235)
T ss_pred EEEECCCCCCHHHHHHHHcCcCc
Confidence 57999999999999999977554
No 179
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=90.09 E-value=0.17 Score=44.50 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=19.2
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
++|+++|+.++|||||+.+++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~ 21 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYV 21 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999994
No 180
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=90.03 E-value=0.19 Score=41.82 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=18.4
Q ss_pred EEeeecccCCChhhhhHHhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~ 116 (412)
|+++|..++|||||+.+|++
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999954
No 181
>PRK00625 shikimate kinase; Provisional
Probab=90.00 E-value=0.18 Score=45.90 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=20.9
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.||.++|+.++||||+++.|...+
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999996543
No 182
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=89.97 E-value=0.17 Score=44.95 Aligned_cols=20 Identities=45% Similarity=0.596 Sum_probs=18.5
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
+|+++||.++|||||..+|.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~ 22 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ 22 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999984
No 183
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=89.91 E-value=0.19 Score=45.45 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.8
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.||+++|..++||||++..|.+.+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 379999999999999999996543
No 184
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.72 E-value=0.23 Score=46.06 Aligned_cols=26 Identities=31% Similarity=0.279 Sum_probs=21.9
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
|+..-|+++|..++|||||+.+|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 33567899999999999999999654
No 185
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=89.57 E-value=0.19 Score=43.38 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=17.9
Q ss_pred EEeeecccCCChhhhhHHh
Q psy9643 97 IGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~ 115 (412)
|+++|+.++|||||+..|+
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 7899999999999999995
No 186
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=89.54 E-value=0.2 Score=46.03 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=21.3
Q ss_pred EEeeecccCCChhhhhHHhhhccc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLME 120 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~~ 120 (412)
|+|.|..+|||||++.+|...|.+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 789999999999999999776654
No 187
>PRK05480 uridine/cytidine kinase; Provisional
Probab=89.41 E-value=0.24 Score=45.88 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=21.6
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
..-|++.|..++|||||+..|.+.+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999996543
No 188
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=89.29 E-value=0.23 Score=42.61 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.0
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...|+++|..++||||++.++++
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 35689999999999999999943
No 189
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=89.22 E-value=0.31 Score=45.28 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=23.7
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++.+-|++.|-++||||||+.+++..|.
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~ 38 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALK 38 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHH
Confidence 34457888999999999999999976653
No 190
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=89.17 E-value=0.24 Score=37.80 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.6
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
|++.|..++||||++.+|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999544
No 191
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=88.99 E-value=0.22 Score=42.53 Aligned_cols=20 Identities=55% Similarity=0.625 Sum_probs=18.4
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
+|+++|+.++|||||+.+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~ 21 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQ 21 (142)
T ss_pred eEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999993
No 192
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=88.74 E-value=0.25 Score=41.19 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=18.2
Q ss_pred EEeeecccCCChhhhhHHhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~ 116 (412)
|++.|-.++||||++..|..
T Consensus 2 I~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999954
No 193
>COG1160 Predicted GTPases [General function prediction only]
Probab=88.72 E-value=0.67 Score=48.09 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.4
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..+-|++||....|||||+.+|+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~il 199 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAIL 199 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhc
Confidence 57999999999999999999993
No 194
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=88.59 E-value=0.23 Score=46.87 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
||++|-.+|||||++..|.+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999996654
No 195
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=88.58 E-value=0.48 Score=41.72 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.6
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..+++++|+...||||+..+|++
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~ 122 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLN 122 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHc
Confidence 57789999999999999999943
No 196
>PRK06696 uridine kinase; Validated
Probab=88.56 E-value=0.31 Score=45.85 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
+..+-|+|.|..++||||++..|...|
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 346788999999999999999996655
No 197
>PRK13949 shikimate kinase; Provisional
Probab=88.49 E-value=0.28 Score=44.27 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=20.9
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
+|.++|..++||||+...|.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999976543
No 198
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=88.27 E-value=0.27 Score=45.14 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
|+++|..++||||++..|.+.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999996644
No 199
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=88.06 E-value=0.34 Score=47.88 Aligned_cols=28 Identities=29% Similarity=0.228 Sum_probs=22.8
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
|...-|||+|-+++||||++..|.+.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4456789999999999999988865553
No 200
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=88.02 E-value=0.86 Score=46.81 Aligned_cols=106 Identities=23% Similarity=0.241 Sum_probs=76.3
Q ss_pred eEEeecCC--CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcC-----CCCCCCccCccc-cchhhcccccccc
Q psy9643 2 AVYYIDAA--DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEG-----KEPEIGIIPLYP-NDKFEINKLNVFV 73 (412)
Q Consensus 2 ~~~~~d~~--d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~ 73 (412)
||=+||.. |++=.|-|.-|+..|+...||+-++.|+|.-||++.-+= ..+|+.-..++. =+.++.|+++
T Consensus 151 avNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd~~~~p~~~--- 227 (428)
T COG5256 151 AVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALDQLEPPERP--- 227 (428)
T ss_pred EEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHhccCCCCCC---
Confidence 34445773 888899999999999999999999999999999887531 235666555553 3588888888
Q ss_pred ccccccchhhhhccccCCCCeeeEEeeecccCCChhhhhHH
Q psy9643 74 PLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l 114 (412)
.|++..++.-++++ - .-++-+.+|-|-+|.=+.-.-+
T Consensus 228 --~d~Plr~pI~~v~~-i-~~~gtv~vGrVEsG~i~~g~~v 264 (428)
T COG5256 228 --LDKPLRLPIQDVYS-I-SGIGTVPVGRVESGVIKPGQKV 264 (428)
T ss_pred --CCCCeEeEeeeEEE-e-cCCceEEEEEEeeeeeccCCEE
Confidence 78888888887765 1 1344466777777754444333
No 201
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=88.01 E-value=0.3 Score=42.42 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=19.3
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
++|+++|..++|||||+.+++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~ 21 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYC 21 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999994
No 202
>PRK08118 topology modulation protein; Reviewed
Probab=87.95 E-value=0.32 Score=43.84 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.3
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.|.|+|-.++||||++..|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999543
No 203
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=87.95 E-value=0.53 Score=42.86 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=19.4
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
.+++++|..+.|||||+.+|.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~ 148 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALL 148 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 204
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=87.93 E-value=0.27 Score=46.52 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
+.+|||.++|||||.+.|++-+.
T Consensus 35 vtViGsNGAGKSTlln~iaG~l~ 57 (263)
T COG1101 35 VTVIGSNGAGKSTLLNAIAGDLK 57 (263)
T ss_pred EEEEcCCCccHHHHHHHhhCccc
Confidence 45899999999999999987664
No 205
>PRK13947 shikimate kinase; Provisional
Probab=87.80 E-value=0.33 Score=43.23 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.8
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
||+++|..++||||+...|...|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999996654
No 206
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=87.71 E-value=0.41 Score=49.44 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.8
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..+|+|+|+.++|||||+.+|..
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999954
No 207
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=87.71 E-value=0.32 Score=42.26 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
||.++|..++||||+++.|...+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999996443
No 208
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=87.64 E-value=0.31 Score=41.57 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=18.1
Q ss_pred EEeeecccCCChhhhhHHhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~ 116 (412)
|+++|+.++|||||..+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~ 21 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG 21 (159)
T ss_pred EEEEcCCCCCHHHHHHHHcc
Confidence 68999999999999999943
No 209
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=87.59 E-value=0.43 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=21.2
Q ss_pred CCeeeEEeeecccCCChhhhhHH
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l 114 (412)
.+.+.|+++|..+.|||||+.++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~ 33 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRH 33 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHH
Confidence 55789999999999999999998
No 210
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=87.57 E-value=0.34 Score=42.44 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.7
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++|+++|..++|||||+.+|++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~ 22 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTT 22 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999943
No 211
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=87.53 E-value=0.36 Score=42.40 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.3
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.++|+++|..++|||||+.++.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~ 24 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFK 24 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 5799999999999999999993
No 212
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=87.45 E-value=0.35 Score=42.67 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=18.4
Q ss_pred EEeeecccCCChhhhhHHhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~ 116 (412)
|+++|...+|||||+.+|++
T Consensus 1 V~v~G~~ssGKSTliNaLlG 20 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLG 20 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEcCCCCCHHHHHHHHHh
Confidence 68999999999999999964
No 213
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=87.44 E-value=0.34 Score=44.57 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.3
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++|+++|..++|||||+.+|++
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g 23 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRG 23 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6799999999999999999955
No 214
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=87.40 E-value=0.38 Score=41.85 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.7
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
|.++|+++|..++|||||+.+++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~ 23 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFI 23 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHH
Confidence 35789999999999999999994
No 215
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=87.33 E-value=0.34 Score=42.02 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.3
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
++|+++|..++|||||+.+++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~ 21 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFT 21 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999994
No 216
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=87.32 E-value=0.33 Score=41.28 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.6
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++|+++|..++||||++.++.+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~ 22 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVD 22 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999943
No 217
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=87.30 E-value=0.32 Score=42.99 Aligned_cols=18 Identities=50% Similarity=0.593 Sum_probs=17.1
Q ss_pred EEeeecccCCChhhhhHH
Q psy9643 97 IGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l 114 (412)
|.+||-+++|||||+.+|
T Consensus 4 imliG~~g~GKTTL~q~L 21 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQAL 21 (143)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678999999999999999
No 218
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=87.19 E-value=0.37 Score=42.98 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.8
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.+|+++|+.++|||||..++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999953
No 219
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=87.16 E-value=0.3 Score=45.62 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=19.9
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|+.++|||||..+|...||
T Consensus 31 ~~i~G~NGsGKSTll~~i~~~l~ 53 (213)
T cd03279 31 FLICGPTGAGKSTILDAITYALY 53 (213)
T ss_pred EEEECCCCCCHHHHHHHheeeEe
Confidence 47999999999999999975554
No 220
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=87.11 E-value=0.36 Score=41.14 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.7
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 36899999999999999996643
No 221
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=86.84 E-value=0.37 Score=44.21 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.6
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
+||+++|..++|||||...|+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~il 21 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTIL 21 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhh
Confidence 589999999999999999994
No 222
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.82 E-value=0.35 Score=44.81 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=19.6
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 29 LALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999997754
No 223
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=86.77 E-value=0.39 Score=39.65 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=18.1
Q ss_pred EEeeecccCCChhhhhHHhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~ 116 (412)
|.++|..++|||||+.+|.+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~ 21 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCG 21 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 68999999999999999943
No 224
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=86.77 E-value=0.38 Score=44.55 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.8
Q ss_pred eEEeeecccCCChhhhhHHhhhccc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLME 120 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~~ 120 (412)
.+++||..++|||||++-|.++..-
T Consensus 41 TlaiIG~NGSGKSTLakMlaGmi~P 65 (267)
T COG4167 41 TLAIIGENGSGKSTLAKMLAGMIEP 65 (267)
T ss_pred EEEEEccCCCcHhHHHHHHhcccCC
Confidence 4688999999999999999887653
No 225
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=86.75 E-value=0.43 Score=42.39 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.0
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.+.|+++|+.++|||||+.+++
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~ 35 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLL 35 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHc
Confidence 5778999999999999999994
No 226
>PRK06217 hypothetical protein; Validated
Probab=86.65 E-value=0.42 Score=43.43 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.0
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.+|+++|-.++||||++.+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999544
No 227
>PRK03839 putative kinase; Provisional
Probab=86.59 E-value=0.4 Score=43.25 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.6
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
+|+++|..++||||++++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999554
No 228
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=86.52 E-value=0.38 Score=44.17 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.0
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|+.++|||||...|++.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35899999999999999997753
No 229
>KOG1532|consensus
Probab=86.51 E-value=0.79 Score=44.87 Aligned_cols=147 Identities=15% Similarity=0.196 Sum_probs=78.2
Q ss_pred eeeEEeeecccCCChhhhhHHhhhcccccc-------chh----hH---HHHHHH--HHHHhhhcCCCCceeEeeCcCcc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLMEGML-------GSY----TY---ELIQSI--AKFLLDSISIRPKIGIICGSGLS 157 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~-------~~~----~~---~~~~~~--~~~i~~~~~~e~~~GIi~GsGl~ 157 (412)
.+-|.++|--++||||.+.+|..-+..... +.- .+ -.++.. +..+|++...-|-=||+.-..|.
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF 98 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLF 98 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHH
Confidence 456788999999999999999543332100 000 00 012222 34567777788888887643332
Q ss_pred cc--c---ccccCceeeecCCCCCccccCCCCCceeEEEEeeCCe----------EEEE---e-cceeeeecCCCCcccc
Q psy9643 158 TI--A---DSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGI----------PIMC---M-QGRFHYYEGYPLWKCA 218 (412)
Q Consensus 158 ~~--~---~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~----------~vv~---~-qgr~H~yeg~~~~~v~ 218 (412)
.. . ..++... +...+-++|+||.-.-+... ..|. +.++ + ..|-|. .-.=++..-
T Consensus 99 ~tk~dqv~~~iek~~-----~~~~~~liDTPGQIE~FtWS-AsGsIIte~lass~ptvv~YvvDt~rs~~-p~tFMSNMl 171 (366)
T KOG1532|consen 99 ATKFDQVIELIEKRA-----EEFDYVLIDTPGQIEAFTWS-ASGSIITETLASSFPTVVVYVVDTPRSTS-PTTFMSNML 171 (366)
T ss_pred HHHHHHHHHHHHHhh-----cccCEEEEcCCCceEEEEec-CCccchHhhHhhcCCeEEEEEecCCcCCC-chhHHHHHH
Confidence 21 1 1111111 12235689999975322221 1121 2222 1 123222 000012223
Q ss_pred HHHHHHHHcCCCEEEEEeccCCCCCCCCC
Q psy9643 219 MPIRVMKLVGVTHLLATNAAGGLNPDYEV 247 (412)
Q Consensus 219 ~~i~ll~~lGv~~II~~n~~G~l~~~~~~ 247 (412)
|+.-++.+..+..|++.|+++-.+.++..
T Consensus 172 YAcSilyktklp~ivvfNK~Dv~d~~fa~ 200 (366)
T KOG1532|consen 172 YACSILYKTKLPFIVVFNKTDVSDSEFAL 200 (366)
T ss_pred HHHHHHHhccCCeEEEEecccccccHHHH
Confidence 35568888899999999999887766543
No 230
>PLN00043 elongation factor 1-alpha; Provisional
Probab=86.25 E-value=0.89 Score=47.66 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCC-----CCCCccCccc-cchhhccccccccccccccchhhh
Q psy9643 11 AEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE-----PEIGIIPLYP-NDKFEINKLNVFVPLINSRRGYAE 84 (412)
Q Consensus 11 ~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 84 (412)
++-++-+..|++++|.+.||+.++.|+|.-||+.+.+=.+ +|+.-..++. =+.+..++++ .++++.|++
T Consensus 164 ~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~i~~p~~~-----~~~plr~~I 238 (447)
T PLN00043 164 KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRP-----SDKPLRLPL 238 (447)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhhcCCCccc-----cCCCcEEEE
Confidence 4445566679999999999998899999999877643111 3332223332 1224444443 355667887
Q ss_pred hccccCCCCeeeEEeeecccCCChh
Q psy9643 85 KQVYSRDKPHCNIGTIGHVDHGKTT 109 (412)
Q Consensus 85 ~~~~~~~k~~~ni~~igHVD~GKST 109 (412)
.+++.-. ..-.++.|.|-+|.-.
T Consensus 239 ~~v~~~~--g~G~vv~G~V~~G~l~ 261 (447)
T PLN00043 239 QDVYKIG--GIGTVPVGRVETGVIK 261 (447)
T ss_pred EEEEEeC--CcEEEEEEEEECCEEe
Confidence 7776432 2334677888888533
No 231
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=86.23 E-value=0.4 Score=41.24 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=18.8
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
+|+++|..++|||||+.++++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999943
No 232
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=86.22 E-value=0.44 Score=43.52 Aligned_cols=23 Identities=39% Similarity=0.358 Sum_probs=20.4
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.-|++++|-.++|||||..+|++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45889999999999999999954
No 233
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.21 E-value=0.4 Score=44.41 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.6
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|+.++|||||...|++.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 234
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=86.18 E-value=0.51 Score=45.15 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=21.8
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
+.+| +|+|..++|||||..+|...|.
T Consensus 25 ~~~~-~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 25 PQFN-AITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCeE-EEECCCCCCHHHHHHHHHHHhc
Confidence 3455 6999999999999999977665
No 235
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=86.15 E-value=0.47 Score=41.93 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=20.3
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..+|+++|..++|||||+.+++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~ 25 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFT 25 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999994
No 236
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=86.14 E-value=0.4 Score=46.52 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.8
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|..++|||||.+.|++.+.
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EEEECCCCCCHHHHHHHHhccCC
Confidence 47999999999999999988765
No 237
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=86.12 E-value=0.39 Score=45.26 Aligned_cols=22 Identities=45% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 29 ~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 29 HGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6899999999999999997754
No 238
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=85.96 E-value=0.53 Score=41.96 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.7
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
|++.++|+++|..+.|||||+.+++
T Consensus 1 ~~~~~kv~~vG~~~vGKTsli~~~~ 25 (169)
T cd01892 1 QRNVFLCFVLGAKGSGKSALLRAFL 25 (169)
T ss_pred CCeEEEEEEECCCCCcHHHHHHHHh
Confidence 4668999999999999999999994
No 239
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=85.94 E-value=0.42 Score=47.45 Aligned_cols=18 Identities=44% Similarity=0.601 Sum_probs=16.6
Q ss_pred EEeeecccCCChhhhhHH
Q psy9643 97 IGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l 114 (412)
+|+|||.++|||||...+
T Consensus 35 ~GIIG~SGAGKSTLiR~i 52 (339)
T COG1135 35 FGIIGYSGAGKSTLLRLI 52 (339)
T ss_pred EEEEcCCCCcHHHHHHHH
Confidence 599999999999999777
No 240
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=85.90 E-value=0.44 Score=41.38 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=18.3
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
.|+++|+.++|||||+.+++
T Consensus 1 ki~iiG~~~~GKssli~~~~ 20 (158)
T cd00878 1 RILILGLDGAGKTTILYKLK 20 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHh
Confidence 47899999999999999994
No 241
>PRK08233 hypothetical protein; Provisional
Probab=85.87 E-value=0.54 Score=42.00 Aligned_cols=24 Identities=38% Similarity=0.302 Sum_probs=20.2
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.-|+|.|-.++||||++.+|...+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 557889999999999999996543
No 242
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=85.70 E-value=0.48 Score=41.13 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=18.6
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
+|+++|+.++|||||+.+++
T Consensus 2 ki~liG~~~~GKSsli~~l~ 21 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFM 21 (161)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999994
No 243
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=85.69 E-value=0.44 Score=43.40 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.0
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999997754
No 244
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=85.67 E-value=0.43 Score=46.72 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.7
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++++|+.++|||||...|++.+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 368999999999999999987543
No 245
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=85.46 E-value=1.8 Score=43.98 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=64.0
Q ss_pred CCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEE
Q psy9643 280 FPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAF 359 (412)
Q Consensus 280 ~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i 359 (412)
..+.+-+|++.|++.+.++|++.+++ ++..+ .|.+.|.|-.-... | .|+|.+.|
T Consensus 260 ~~D~~~~~~~~l~~~L~~~A~~~~Ip--~Q~~v-----~~~ggTDA~a~~~~--g-----------------~gvpta~I 313 (355)
T COG1363 260 VKDASGIYHPKLRKFLLELAEKNNIP--YQVDV-----SPGGGTDAGAAHLT--G-----------------GGVPTALI 313 (355)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHcCCC--eEEEe-----cCCCCccHHHHHHc--C-----------------CCCceEEE
Confidence 34556789999999999999999999 66553 45477876543333 2 37999999
Q ss_pred EeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q psy9643 360 SLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLN 409 (412)
Q Consensus 360 ~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~~~~ 409 (412)
++-+.|-+. .-+-++-++ ...+.+||.+++.++..+.++
T Consensus 314 gip~ry~Hs---~~e~~~~~D--------~~~~~~Ll~~~i~~~~~~~~~ 352 (355)
T COG1363 314 GIPTRYIHS---PVEVAHLDD--------LEATVKLLVAYLESLDRETVE 352 (355)
T ss_pred ecccccccC---cceeecHHH--------HHHHHHHHHHHHHhcchhhhc
Confidence 999998842 112233333 334567888888887665543
No 246
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=85.44 E-value=0.43 Score=43.60 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.0
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999997754
No 247
>KOG1423|consensus
Probab=85.42 E-value=0.96 Score=44.93 Aligned_cols=66 Identities=24% Similarity=0.326 Sum_probs=40.4
Q ss_pred CCCCCCCeeechhhhhhcCC-CCCCCccCccccchhhccccccccccccccchhhhhccccCCCCeeeEEeeecccCCCh
Q psy9643 30 WKGDEVPFVKGSALCALEGK-EPEIGIIPLYPNDKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKT 108 (412)
Q Consensus 30 ~~~~~~p~~~gsal~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ni~~igHVD~GKS 108 (412)
|+...++.-++++++++-|- +++-.+.++|+ +..-++. ....+| .++|++||-.+.|||
T Consensus 27 fssa~~~~~~~~~~k~~~G~s~~etsv~p~~p-------------a~~esrd------e~e~~k-~L~vavIG~PNvGKS 86 (379)
T KOG1423|consen 27 FSSASTSTYRERVEKLFFGYSDWETSVGPLYP-------------AALESRD------EEEAQK-SLYVAVIGAPNVGKS 86 (379)
T ss_pred eecCCccchhhhhhhhhccccCcccccccCcc-------------ccccCCC------chhcce-EEEEEEEcCCCcchh
Confidence 55666777777777777551 22223333321 1111111 112244 899999999999999
Q ss_pred hhhhHHh
Q psy9643 109 TLTAAIT 115 (412)
Q Consensus 109 Tl~~~l~ 115 (412)
||+.++.
T Consensus 87 tLtN~mi 93 (379)
T KOG1423|consen 87 TLTNQMI 93 (379)
T ss_pred hhhhHhh
Confidence 9999994
No 248
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.37 E-value=0.46 Score=44.82 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 29 LAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999998754
No 249
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.36 E-value=0.47 Score=42.85 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.9
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||.+.|++.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35899999999999999997653
No 250
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=85.32 E-value=0.48 Score=44.29 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=19.9
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|+.++|||||.+.|++.+
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 35899999999999999997653
No 251
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=85.30 E-value=0.47 Score=43.98 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999997754
No 252
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=85.29 E-value=0.52 Score=41.60 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=18.6
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
.|+++|+.++|||||+.++.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~ 21 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLV 21 (166)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999994
No 253
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=85.24 E-value=0.35 Score=40.07 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=16.1
Q ss_pred eeecccCCChhhhhHHhh
Q psy9643 99 TIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 99 ~igHVD~GKSTl~~~l~~ 116 (412)
++|+.++|||||+.++.+
T Consensus 1 iiG~~~~GKStl~~~l~~ 18 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLG 18 (157)
T ss_pred CCCcCCCcHHHHHHHHHh
Confidence 589999999999999944
No 254
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=85.24 E-value=0.51 Score=40.42 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=17.9
Q ss_pred EEeeecccCCChhhhhHHhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~ 116 (412)
|.++|..++||||++.+|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999953
No 255
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=85.23 E-value=0.51 Score=39.26 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.8
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
|++.|-.++||||++..|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999654
No 256
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=85.19 E-value=0.48 Score=44.03 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.4
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 36899999999999999998765
No 257
>KOG1489|consensus
Probab=84.89 E-value=0.64 Score=46.26 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=22.5
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
=|...+||.+|-..+|||||..+|+.
T Consensus 193 LKsiadvGLVG~PNAGKSTLL~als~ 218 (366)
T KOG1489|consen 193 LKSIADVGLVGFPNAGKSTLLNALSR 218 (366)
T ss_pred eeeecccceecCCCCcHHHHHHHhhc
Confidence 45567899999999999999999964
No 258
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.85 E-value=0.51 Score=43.86 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 45899999999999999997754
No 259
>PRK05541 adenylylsulfate kinase; Provisional
Probab=84.84 E-value=0.68 Score=41.58 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=21.6
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
++...|++.|..++||||++..|...
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34568899999999999999999443
No 260
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=84.77 E-value=0.55 Score=43.47 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.3
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998754
No 261
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=84.72 E-value=0.52 Score=43.57 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999997754
No 262
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=84.51 E-value=0.63 Score=41.88 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=20.9
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+....|+++|..++|||||+.+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~ 40 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLK 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 336778999999999999999994
No 263
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=84.48 E-value=0.54 Score=42.23 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.1
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.|+++|.-++|||||+.+|...
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999543
No 264
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=84.43 E-value=0.57 Score=40.78 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=19.3
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
++|+++|..++|||||+.+|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~ 21 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFV 21 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999994
No 265
>KOG0090|consensus
Probab=84.39 E-value=1.1 Score=42.20 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=17.6
Q ss_pred eeEEeeecccCCChhhhhHH
Q psy9643 95 CNIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l 114 (412)
-.|-++|=-|+|||+|--+|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL 58 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQL 58 (238)
T ss_pred CcEEEEecCCCCceeeeeeh
Confidence 45678999999999999888
No 266
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.38 E-value=0.55 Score=43.82 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35899999999999999997754
No 267
>PRK07667 uridine kinase; Provisional
Probab=84.34 E-value=0.67 Score=42.65 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.9
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
++-|||.|..++||||++..|...
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 478899999999999999999543
No 268
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=84.32 E-value=0.63 Score=41.19 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=20.1
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.++|+++|+.++|||||+.+++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~ 23 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFC 23 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999994
No 269
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=84.31 E-value=0.55 Score=43.30 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=20.6
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++++|..++|||||...|++.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 358999999999999999987543
No 270
>PLN02348 phosphoribulokinase
Probab=84.30 E-value=0.69 Score=47.53 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=24.2
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
+..+-|||.|..++||||++.+|...|.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4468899999999999999999977664
No 271
>PRK07261 topology modulation protein; Provisional
Probab=84.28 E-value=0.64 Score=41.97 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.7
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
.|+|+|-.++|||||+.+|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999954
No 272
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=84.22 E-value=0.72 Score=42.04 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=24.5
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccccc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLMEGM 122 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~ 122 (412)
..||+.||--++||||+..+|++.|.-..
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 35899999999999999999987776433
No 273
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.20 E-value=0.53 Score=46.15 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|+.++|||||...|.+.+
T Consensus 35 v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 35 TALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred EEEECCCCChHHHHHHHHhcCC
Confidence 6899999999999999998754
No 274
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=84.19 E-value=0.56 Score=44.65 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 30 TALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 5899999999999999997754
No 275
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.15 E-value=0.6 Score=43.92 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=20.7
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++++|..++|||||...|++.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999987543
No 276
>PRK05439 pantothenate kinase; Provisional
Probab=84.14 E-value=0.73 Score=45.96 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=23.3
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhhh
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
..+....|||.|-+++||||++..|...
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3455688999999999999999999543
No 277
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=84.13 E-value=0.59 Score=43.88 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999997754
No 278
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=84.12 E-value=0.56 Score=44.18 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|+.++|||||...|++.+
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999997754
No 279
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=84.10 E-value=0.57 Score=43.99 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.3
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999997754
No 280
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.07 E-value=0.58 Score=44.89 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 41 ~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 41 TAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 6899999999999999997754
No 281
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=84.03 E-value=0.74 Score=47.09 Aligned_cols=112 Identities=16% Similarity=0.231 Sum_probs=53.7
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeee
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFP 170 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~ 170 (412)
++..+||+++|-.++||||++.+|-|. |..+.. ....|++-. -.++..++
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl---~~~d~~------------------aA~tGv~et---------T~~~~~Y~ 81 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGL---GHEDEG------------------AAPTGVVET---------TMEPTPYP 81 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT-----TTSTT------------------S--SSSHSC---------CTS-EEEE
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCC---CCCCcC------------------cCCCCCCcC---------CCCCeeCC
Confidence 345799999999999999999999432 111110 122333210 01333444
Q ss_pred cCCCCCccccCCCCCce-eE---------EEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCC
Q psy9643 171 YDTIPYFPVSTVPGHKG-QL---------VFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG 240 (412)
Q Consensus 171 ~~~~~~~~i~d~pGH~~-~l---------~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~ 240 (412)
+-..|++.+-|.||... ++ -...+ +.-+++..+|++. ..+. -...++.+|-+-.++-++++.
T Consensus 82 ~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~y-D~fiii~s~rf~~------ndv~-La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 82 HPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRY-DFFIIISSERFTE------NDVQ-LAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp -SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG--SEEEEEESSS--H------HHHH-HHHHHHHTT-EEEEEE--HHH
T ss_pred CCCCCCCeEEeCCCCCCCCCCHHHHHHHcccccc-CEEEEEeCCCCch------hhHH-HHHHHHHcCCcEEEEEecccc
Confidence 44667777888898732 11 11111 2334455566653 1110 125667788777777788874
No 282
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=83.92 E-value=0.63 Score=43.04 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.3
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998754
No 283
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=83.89 E-value=0.57 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|+.++|||||+..|++.+
T Consensus 36 ~~I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 36 VSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999997754
No 284
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=83.86 E-value=0.63 Score=43.30 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=19.3
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
-++++|+.++|||||.++|...+
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l 46 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 44799999999999999995443
No 285
>PLN02796 D-glycerate 3-kinase
Probab=83.86 E-value=0.77 Score=46.43 Aligned_cols=28 Identities=32% Similarity=0.247 Sum_probs=23.3
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++.+-||++|..++|||||+..|.+.+.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3457789999999999999999976553
No 286
>PRK00131 aroK shikimate kinase; Reviewed
Probab=83.85 E-value=0.71 Score=40.74 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=21.3
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
..+|.++|..++||||++..|...+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3488999999999999999996544
No 287
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=83.84 E-value=0.61 Score=41.76 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.4
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 30 LLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999997643
No 288
>KOG1424|consensus
Probab=83.70 E-value=2.7 Score=44.37 Aligned_cols=101 Identities=21% Similarity=0.212 Sum_probs=54.7
Q ss_pred HHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCC-CCC-----ccCcc-------c-cchhhccccc---ccccccc
Q psy9643 15 ELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEP-EIG-----IIPLY-------P-NDKFEINKLN---VFVPLIN 77 (412)
Q Consensus 15 ~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~-~~~-----~~~~~-------~-~~~~~~~~~~---~~~~~~~ 77 (412)
+|+.-|.|.--.+| |.-+++|+|-=||+.|-+..++ .++ .+.++ + +....|.+.. .+.+.+-
T Consensus 216 DLl~~~qr~aWa~Y-F~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~ 294 (562)
T KOG1424|consen 216 DLLPPEQRVAWAEY-FRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVE 294 (562)
T ss_pred hcCCHHHHHHHHHH-HHhcCceEEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHH
Confidence 45556666666666 7778899999999996432221 111 11111 1 0010111111 0000000
Q ss_pred ccch---hhhhccccCCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 78 SRRG---YAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 78 ~~~~---~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..+. |-.=+.-.+.|++++||++|..+-|||+++.+|.+
T Consensus 295 ~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG 336 (562)
T KOG1424|consen 295 QLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVG 336 (562)
T ss_pred hhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhc
Confidence 0000 00002345678889999999999999999999944
No 289
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=83.70 E-value=0.67 Score=44.70 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.7
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
....+||+++|..++|||||+.+|++
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg 53 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFG 53 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 44568999999999999999999943
No 290
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=83.68 E-value=0.77 Score=43.41 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=20.9
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
+.+| +++|..++|||||+.+|+..+.
T Consensus 23 ~~~~-~i~GpNGsGKStll~ai~~~l~ 48 (243)
T cd03272 23 PKHN-VVVGRNGSGKSNFFAAIRFVLS 48 (243)
T ss_pred CCcE-EEECCCCCCHHHHHHHHHHHHc
Confidence 3455 6999999999999999965444
No 291
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=83.64 E-value=0.58 Score=44.17 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|+.++|||||...|++.+
T Consensus 34 ~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 34 VTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6899999999999999997754
No 292
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=83.63 E-value=0.61 Score=42.27 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=19.8
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999997643
No 293
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.59 E-value=0.62 Score=44.19 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|+.++|||||...|++.+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 30 LVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999997754
No 294
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=83.51 E-value=0.66 Score=39.97 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=19.1
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
.+|+++|..++|||||+.++.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~ 21 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYV 21 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999994
No 295
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=83.50 E-value=0.63 Score=42.97 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 37 ~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 37 IGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5899999999999999998754
No 296
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=83.48 E-value=0.62 Score=46.72 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=20.5
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..||.|.|..++||||++.+|+.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~ 166 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIA 166 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999943
No 297
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=83.47 E-value=0.61 Score=46.01 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|..++|||||...|++.+.
T Consensus 22 ~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 22 FGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 68999999999999999988653
No 298
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=83.43 E-value=0.68 Score=42.90 Aligned_cols=23 Identities=35% Similarity=0.281 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999997753
No 299
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=83.38 E-value=0.68 Score=43.52 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=19.8
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.-|++-|-+++|||||+.+|..-+
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHh
Confidence 347889999999999999995433
No 300
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=83.35 E-value=0.64 Score=43.19 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 32 ~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 32 VFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998754
No 301
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=83.30 E-value=0.64 Score=43.84 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999997754
No 302
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=83.28 E-value=0.63 Score=43.30 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=19.9
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999997654
No 303
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=83.28 E-value=0.65 Score=43.24 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998754
No 304
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=83.26 E-value=0.65 Score=43.88 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.0
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 35899999999999999997753
No 305
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=83.17 E-value=0.66 Score=42.92 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 29 VVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999997754
No 306
>PRK14532 adenylate kinase; Provisional
Probab=83.10 E-value=0.78 Score=41.63 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.2
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
+||.++|-.++||||++.+|...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999643
No 307
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=83.08 E-value=0.67 Score=40.37 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=17.7
Q ss_pred eEEeeecccCCChhhhhHH
Q psy9643 96 NIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l 114 (412)
.|+++|+.++|||||+.+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l 19 (158)
T cd04151 1 RILILGLDNAGKTTILYRL 19 (158)
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 3789999999999999999
No 308
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=83.05 E-value=0.76 Score=39.93 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=19.3
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
+.|+++|+.++||||++.+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~ 22 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFV 22 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 309
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=82.98 E-value=0.71 Score=43.72 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.3
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|+.++|||||...|++.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999997754
No 310
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=82.94 E-value=0.66 Score=45.97 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.0
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++++|..++|||||+..|++.+.
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 469999999999999999988654
No 311
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.92 E-value=0.66 Score=45.30 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|+.++|||||...|++.+
T Consensus 36 ~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 36 TALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 6899999999999999998754
No 312
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.85 E-value=0.68 Score=43.66 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 30 VALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 6899999999999999998754
No 313
>PRK00089 era GTPase Era; Reviewed
Probab=82.84 E-value=0.7 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.3
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...|+++|..++|||||+.+|++
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g 27 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVG 27 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999943
No 314
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.82 E-value=0.68 Score=45.07 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 35899999999999999998754
No 315
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=82.82 E-value=0.69 Score=42.69 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=20.5
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++++|..++|||||...|++.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 358999999999999999977543
No 316
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=82.77 E-value=0.87 Score=41.88 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=17.2
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
-+|.++|=-|+|||+|--+|.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~ 24 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLV 24 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHh
Confidence 467899999999999999993
No 317
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.74 E-value=0.7 Score=44.01 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.9
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 33 TALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EEEECCCCCCHHHHHHHHhhcc
Confidence 6899999999999999998754
No 318
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=82.71 E-value=0.82 Score=41.23 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.4
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
-++|+|--|+|||||+.+|..
T Consensus 4 Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 4 ILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred EEEEEecCCCChhhHHHHHHH
Confidence 368999999999999999943
No 319
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=82.70 E-value=0.7 Score=40.03 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=18.5
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
||+++|..++|||||+.+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~ 20 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLK 20 (162)
T ss_pred CEEEECCCCCCHHHHHHHHc
Confidence 68999999999999999994
No 320
>COG1160 Predicted GTPases [General function prediction only]
Probab=82.69 E-value=1.6 Score=45.48 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.7
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
-|+++|-..-|||||-.+|++
T Consensus 5 ~VAIVGRPNVGKSTLFNRL~g 25 (444)
T COG1160 5 VVAIVGRPNVGKSTLFNRLTG 25 (444)
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999999943
No 321
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=82.66 E-value=0.69 Score=45.64 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.3
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|+.++|||||++.|++.+.
T Consensus 34 ~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 34 FGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred EEEECCCCCCHHHHHHHHhCCcC
Confidence 58999999999999999977554
No 322
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=82.66 E-value=0.72 Score=42.53 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999997754
No 323
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=82.65 E-value=0.69 Score=46.66 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.8
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++++|..++|||||++.|++.+.
T Consensus 69 i~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 368999999999999999987553
No 324
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=82.64 E-value=0.71 Score=43.70 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.+|+|-.++|||||.++|++.+.
T Consensus 30 ~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 30 LAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred EEEECCCCccHHHHHHHhhCccC
Confidence 48999999999999999998876
No 325
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=82.63 E-value=0.68 Score=42.92 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 28 ~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 28 LAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 5899999999999999998754
No 326
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=82.63 E-value=0.7 Score=43.72 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999997754
No 327
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.58 E-value=0.7 Score=44.34 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.6
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|+.++|||||...|++.+
T Consensus 41 ~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 41 TALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999997643
No 328
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=82.58 E-value=0.8 Score=40.38 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=18.8
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
++|+++|..++|||||+.++.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~ 21 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998883
No 329
>PRK10908 cell division protein FtsE; Provisional
Probab=82.44 E-value=0.73 Score=43.03 Aligned_cols=23 Identities=30% Similarity=0.159 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999997754
No 330
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.44 E-value=0.72 Score=44.61 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|+.++|||||...|++.+
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 45899999999999999998754
No 331
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.41 E-value=0.73 Score=43.30 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.6
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++++|..++|||||...|++.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 368999999999999999987653
No 332
>PRK13946 shikimate kinase; Provisional
Probab=82.41 E-value=0.86 Score=41.50 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.8
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
+.+|+++|..++||||+...|...|
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999997654
No 333
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=82.37 E-value=0.78 Score=42.45 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.0
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|+.++|||||..+|.+.+
T Consensus 25 ~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 25 TAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3799999999999999996544
No 334
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=82.36 E-value=1.5 Score=42.79 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.9
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+.++++++|..+.||||+..+|+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~ 139 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLA 139 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHh
Confidence 36889999999999999999994
No 335
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=82.35 E-value=0.8 Score=39.74 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=19.1
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
++|+++|..++||||++.+|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~ 21 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFT 21 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999994
No 336
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.33 E-value=0.73 Score=44.01 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.6
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 36 ~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 36 TALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5899999999999999997754
No 337
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=82.26 E-value=0.75 Score=42.83 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||.+.|++.+
T Consensus 40 ~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 40 LLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 6899999999999999997753
No 338
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=82.24 E-value=0.72 Score=45.73 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=20.8
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++++|..++|||||...|++.+.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~ 58 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLL 58 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 368999999999999999988653
No 339
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=82.21 E-value=1.8 Score=45.45 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCC-----CCCCCccCccc-cchhhccccccccccccccchhh
Q psy9643 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGK-----EPEIGIIPLYP-NDKFEINKLNVFVPLINSRRGYA 83 (412)
Q Consensus 10 d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 83 (412)
|++-++.++.|++++|.+.||..+++|+|.-||+...+=. -+|+.-.+++. =+.+..++++ .++++.|+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~~~~~~~-----~~~p~r~~ 237 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTLEPPKRP-----VDKPLRLP 237 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCCCCCCcC-----CCCCeEEE
Confidence 5688899999999999999998888999999998764211 13332223332 1222233332 34556677
Q ss_pred hhccccCCCCeeeEEeeecccCCC
Q psy9643 84 EKQVYSRDKPHCNIGTIGHVDHGK 107 (412)
Q Consensus 84 ~~~~~~~~k~~~ni~~igHVD~GK 107 (412)
+.+++.-.- .-.++.|.|-+|.
T Consensus 238 I~~v~~v~g--~Gtvv~G~V~~G~ 259 (446)
T PTZ00141 238 LQDVYKIGG--IGTVPVGRVETGI 259 (446)
T ss_pred EEEEEecCC--ceEEEEEEEEcce
Confidence 777764321 2335567777664
No 340
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=82.20 E-value=0.96 Score=47.01 Aligned_cols=28 Identities=36% Similarity=0.310 Sum_probs=23.4
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
+++.+-|||+|.-++|||||+..|.+.+
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456788999999999999999996544
No 341
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=82.19 E-value=0.75 Score=43.73 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 32 VAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999997754
No 342
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=82.18 E-value=0.74 Score=45.45 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.3
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998754
No 343
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=82.00 E-value=0.89 Score=39.13 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.1
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
..|+++|..++|||||+.+++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~ 22 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLI 22 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999994
No 344
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=81.98 E-value=0.91 Score=40.42 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=20.2
Q ss_pred CeeeEEeeecccCCChhhhhHH
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l 114 (412)
+.++|+++|+.++|||||+.++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l 29 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKL 29 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHH
Confidence 3589999999999999999999
No 345
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=81.96 E-value=0.77 Score=43.42 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999997754
No 346
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=81.96 E-value=0.79 Score=42.16 Aligned_cols=23 Identities=35% Similarity=0.255 Sum_probs=20.0
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|+.++|||||...|++.+
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999997754
No 347
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=81.95 E-value=0.78 Score=39.96 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.7
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
-|+++|..++|||||+.++.+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999943
No 348
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=81.93 E-value=0.94 Score=43.96 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=23.2
Q ss_pred ccccCCCCeeeEEeeecccCCChhhhhHHh
Q psy9643 86 QVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 86 ~~~~~~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
++++..+...-|||-|-.++|||||+++|.
T Consensus 21 ~l~~~~g~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 21 RLYPHTGRAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp HHGGGTT-SEEEEEEE-TTSSHHHHHHHHH
T ss_pred HHHhhcCCceEEEeeCCCCCcHHHHHHHHH
Confidence 445555556789999999999999999994
No 349
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.90 E-value=0.79 Score=42.76 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 33 VALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999997753
No 350
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=81.90 E-value=0.94 Score=42.75 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=24.0
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhccc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLME 120 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~ 120 (412)
.+..-||++|-.++|||||+..|.+.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 44677899999999999999999765543
No 351
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.89 E-value=0.77 Score=44.63 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=20.7
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++++|+.++|||||...|++.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 358999999999999999987543
No 352
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=81.89 E-value=0.85 Score=42.75 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.7
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++++|..++|||||.+.|++.+.
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCccC
Confidence 368999999999999999987653
No 353
>PLN03108 Rab family protein; Provisional
Probab=81.89 E-value=0.95 Score=42.00 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=20.4
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.++|+++|..++|||||+.+++
T Consensus 6 ~~kivivG~~gvGKStLi~~l~ 27 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFT 27 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5899999999999999999994
No 354
>PRK07429 phosphoribulokinase; Provisional
Probab=81.86 E-value=1.1 Score=45.16 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=23.8
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
+..+-|++.|-.++||||++..|.+.+.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLG 33 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence 3467899999999999999999976654
No 355
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=81.77 E-value=0.99 Score=37.06 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=20.9
Q ss_pred eeEEeeecccCCChhhhhHHhhhcc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++.++|..++||||++..|...+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4688999999999999999955443
No 356
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=81.76 E-value=0.82 Score=42.79 Aligned_cols=22 Identities=27% Similarity=0.293 Sum_probs=20.1
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 29 TALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 5899999999999999998865
No 357
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=81.73 E-value=2 Score=42.06 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=27.5
Q ss_pred chhhhhccc---cCCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 80 RGYAEKQVY---SRDKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 80 ~~~~~~~~~---~~~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.+..++..+ ..++...-||+.|-|+.||||++..|..
T Consensus 65 ~~~~~~~~~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~ 104 (283)
T COG1072 65 RLFAELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARILQA 104 (283)
T ss_pred HHHHHHHHHhccCCCCCCEEEEeccCccccHHHHHHHHHH
Confidence 334444444 4566678899999999999999998844
No 358
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.72 E-value=0.77 Score=44.97 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|..++|||||...|++.+.
T Consensus 36 ~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 36 VGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 58999999999999999987653
No 359
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=81.69 E-value=0.78 Score=44.46 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.3
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998754
No 360
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.69 E-value=0.79 Score=45.82 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.3
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|..++|||||...|++.+.
T Consensus 55 ~~I~G~nGsGKSTLl~~L~Gl~~ 77 (320)
T PRK13631 55 YFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 68999999999999999987543
No 361
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.67 E-value=0.85 Score=43.42 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=19.9
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|+.++|||||...|++.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 36899999999999999997643
No 362
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=81.65 E-value=0.8 Score=43.90 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 28 ~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999997754
No 363
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=81.64 E-value=0.81 Score=43.89 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 36899999999999999997754
No 364
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=81.63 E-value=0.89 Score=41.38 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.0
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
+|+++|..++|||||...|.+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999954
No 365
>PRK15494 era GTPase Era; Provisional
Probab=81.62 E-value=0.97 Score=45.53 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.1
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
...+|+++|+.++|||||+.+|+
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~ 73 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRII 73 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Confidence 37899999999999999999994
No 366
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=81.62 E-value=0.85 Score=40.67 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=17.9
Q ss_pred EEeeecccCCChhhhhHHhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~ 116 (412)
|+++|..++||||++.+|..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999954
No 367
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=81.58 E-value=0.97 Score=40.89 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.2
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.++|+++|..++||||++.+++
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~ 38 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLK 38 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHh
Confidence 5889999999999999999994
No 368
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.54 E-value=0.82 Score=42.27 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.0
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999997754
No 369
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=81.52 E-value=0.88 Score=42.25 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.3
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999997754
No 370
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.51 E-value=0.82 Score=43.49 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 46899999999999999997754
No 371
>PLN03118 Rab family protein; Provisional
Probab=81.49 E-value=0.99 Score=41.74 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.8
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..+.|+++|+.++|||||+.+++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~ 35 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFI 35 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHH
Confidence 36789999999999999999993
No 372
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=81.49 E-value=0.9 Score=41.71 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.3
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999997754
No 373
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=81.45 E-value=0.88 Score=42.25 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 36899999999999999998754
No 374
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.43 E-value=0.84 Score=42.17 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 29 FGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998754
No 375
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=81.37 E-value=0.85 Score=42.68 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.7
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++++|..++|||||...|++.+.
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 358999999999999999987653
No 376
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=81.36 E-value=0.81 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.5
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...||.+.|-.++||||++.+|++
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~ 184 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLIS 184 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHc
Confidence 468999999999999999999943
No 377
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=81.36 E-value=0.84 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.9
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 38 ~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 38 MAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999998754
No 378
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=81.36 E-value=0.84 Score=43.04 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 36899999999999999998754
No 379
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.32 E-value=0.84 Score=42.72 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|..++|||||...|++.+.
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 32 VAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred EEEECCCCCCHHHHHHHHhcCcC
Confidence 68999999999999999987653
No 380
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.32 E-value=0.85 Score=43.52 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.0
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 33 TAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998764
No 381
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=81.29 E-value=0.95 Score=40.66 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.5
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||...|++.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999764
No 382
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=81.18 E-value=0.95 Score=39.75 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.9
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.++|+++|+.++|||||+.++.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~ 23 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFT 23 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999994
No 383
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=81.09 E-value=0.86 Score=43.76 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.0
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999997754
No 384
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=81.09 E-value=0.9 Score=43.98 Aligned_cols=23 Identities=39% Similarity=0.342 Sum_probs=20.2
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|=.++|||||++.++|.+.
T Consensus 33 ~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 33 TALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 47899999999999999988654
No 385
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=81.09 E-value=0.84 Score=45.95 Aligned_cols=23 Identities=39% Similarity=0.346 Sum_probs=21.0
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
...||.+.|-.++||||++.+|+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~ 181 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAAL 181 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999994
No 386
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=80.98 E-value=0.87 Score=43.90 Aligned_cols=23 Identities=39% Similarity=0.357 Sum_probs=21.1
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.+.||.|+|-.++||||++.+|+
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all 148 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALL 148 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHH
T ss_pred cceEEEEECCCccccchHHHHHh
Confidence 47899999999999999999993
No 387
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=80.96 E-value=0.87 Score=43.06 Aligned_cols=23 Identities=35% Similarity=0.250 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998754
No 388
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.85 E-value=0.93 Score=41.50 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.3
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|+.++|||||...|++.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999663
No 389
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=80.79 E-value=0.97 Score=43.69 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 46899999999999999997754
No 390
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=80.79 E-value=1.1 Score=40.09 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=20.1
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
...|+++|+.++|||||+.+++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~ 36 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFL 36 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHc
Confidence 5689999999999999999993
No 391
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=80.78 E-value=1.9 Score=42.30 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
++.+.++++|..+.||||+..+|+
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~ 142 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLA 142 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHh
Confidence 346789999999999999999994
No 392
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=80.76 E-value=0.85 Score=43.56 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 24 i~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 24 ILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 36899999999999999997754
No 393
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=80.73 E-value=0.93 Score=44.32 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.3
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
||++|-.++||||++.+|.+.+.
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhC
Confidence 68999999999999999977654
No 394
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=80.72 E-value=1.2 Score=38.94 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=22.3
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
++...|.+.|-.++||||+++.+.+.+
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345568899999999999999996654
No 395
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=80.71 E-value=0.99 Score=39.13 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=19.0
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
+.|+++|..++|||||..+++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~ 21 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFV 21 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999994
No 396
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=80.68 E-value=0.93 Score=41.64 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.3
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|..++|||||...|++.+.
T Consensus 27 ~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 27 YAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 68999999999999999987543
No 397
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.66 E-value=0.88 Score=44.64 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.6
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++++|..++|||||...|++.+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLLQ 58 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 358999999999999999987543
No 398
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=80.65 E-value=0.94 Score=41.49 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999997754
No 399
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.64 E-value=0.99 Score=42.91 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=19.9
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 31 VTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 45899999999999999997643
No 400
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.63 E-value=0.95 Score=39.82 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=19.6
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35899999999999999996643
No 401
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=80.60 E-value=0.91 Score=42.37 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.0
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999997754
No 402
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.60 E-value=0.91 Score=43.96 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 53 ~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 53 FVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999997754
No 403
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.56 E-value=0.94 Score=43.74 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.2
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||...|++.
T Consensus 50 ~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 50 TALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999764
No 404
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=80.56 E-value=0.94 Score=42.43 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.4
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 46899999999999999998764
No 405
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=80.55 E-value=0.92 Score=43.78 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999997754
No 406
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.52 E-value=0.97 Score=40.51 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=19.9
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 35899999999999999997753
No 407
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.49 E-value=0.92 Score=44.21 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 36 ~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 36 LSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999998754
No 408
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.42 E-value=0.94 Score=43.18 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.2
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||...|++.
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 34 TALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999764
No 409
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=80.39 E-value=0.92 Score=44.43 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=19.4
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.|+++|.-++|||||+.+|...|
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999995443
No 410
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=80.39 E-value=0.87 Score=40.22 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.6
Q ss_pred EEeeecccCCChhhhhHHhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~ 116 (412)
|+++|-.++||||++..|.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999954
No 411
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.36 E-value=0.93 Score=43.62 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=19.9
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
-++++|+.++|||||...|++.+
T Consensus 38 ~~~i~G~nGsGKSTLl~~iaG~~ 60 (257)
T PRK14246 38 IFGIMGPSGSGKSTLLKVLNRLI 60 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35899999999999999997743
No 412
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=80.34 E-value=1.2 Score=39.15 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=20.4
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.++|+++|..++|||||+.+++
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~ 26 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYV 26 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 6899999999999999999993
No 413
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.30 E-value=0.95 Score=42.96 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999997754
No 414
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=80.30 E-value=0.98 Score=43.08 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||...|++.
T Consensus 35 ~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 35 TALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999764
No 415
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=80.27 E-value=2.1 Score=38.80 Aligned_cols=40 Identities=35% Similarity=0.459 Sum_probs=32.0
Q ss_pred cCCCHHHHHHHHHHHHhhHhhcCCCC-CCCCeeechhhhhh
Q psy9643 7 DAADAEMAELVEMEMRELLTEMGWKG-DEVPFVKGSALCAL 46 (412)
Q Consensus 7 d~~d~e~~~lve~e~~~~l~~~~~~~-~~~p~~~gsal~al 46 (412)
|....++.+.++.-...++..+++++ ...||+.+||+...
T Consensus 133 D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~ 173 (188)
T PF00009_consen 133 DLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGD 173 (188)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTB
T ss_pred cchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCC
Confidence 77767777777655558899999998 58999999997763
No 416
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=80.27 E-value=2.4 Score=43.87 Aligned_cols=100 Identities=24% Similarity=0.280 Sum_probs=60.0
Q ss_pred cCC--CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCC-----CCCCccCccc-cchhhccccccccccccc
Q psy9643 7 DAA--DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE-----PEIGIIPLYP-NDKFEINKLNVFVPLINS 78 (412)
Q Consensus 7 d~~--d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 78 (412)
|+. +++.++.+..|++++|.++||+.++.|++.-||+..-+=++ +|+.-..++. -+.+..++++ .++
T Consensus 150 Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~~~~~~~~-----~~~ 224 (425)
T PRK12317 150 DAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDNLKPPEKP-----TDK 224 (425)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhcCCCCccc-----cCC
Confidence 874 45667777889999999999987789999999986532111 2332222221 1122222222 355
Q ss_pred cchhhhhccccCCCCeeeEEeeecccCCChhhhhH
Q psy9643 79 RRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAA 113 (412)
Q Consensus 79 ~~~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~ 113 (412)
++.|++.+++.-. .+-.++.|.|-+|+=..-..
T Consensus 225 p~r~~i~~~~~~~--g~G~vv~G~v~~G~v~~Gd~ 257 (425)
T PRK12317 225 PLRIPIQDVYSIS--GVGTVPVGRVETGVLKVGDK 257 (425)
T ss_pred CcEEEEEEEEeeC--CCeEEEEEEEeeccEecCCE
Confidence 6667777776433 23446778888886444333
No 417
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=80.26 E-value=1 Score=41.88 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.3
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|-.++|||||...|++.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998754
No 418
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.25 E-value=0.94 Score=44.32 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.9
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 40 ~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 40 TCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999997754
No 419
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.15 E-value=0.93 Score=43.87 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 30 TGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6899999999999999997754
No 420
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=80.13 E-value=2.3 Score=38.06 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.1
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..+++++|....|||||..+|.
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~ 136 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLR 136 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999994
No 421
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=80.13 E-value=1 Score=42.51 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC
Confidence 35899999999999999997754
No 422
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.12 E-value=0.99 Score=41.71 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.5
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||...|++.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 4689999999999999999764
No 423
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.11 E-value=1.1 Score=40.32 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=19.4
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||.+.|++.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999764
No 424
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.11 E-value=0.95 Score=43.98 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 36 ~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 36 TAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999997754
No 425
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=80.03 E-value=0.99 Score=39.45 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.3
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||...|++.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4589999999999999999664
No 426
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=80.02 E-value=0.95 Score=43.85 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=18.3
Q ss_pred EEeeecccCCChhhhhHHhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~ 116 (412)
|+++|+.++|||||+.+|++
T Consensus 3 V~liG~pnvGKSTLln~L~~ 22 (270)
T TIGR00436 3 VAILGRPNVGKSTLLNQLHG 22 (270)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999953
No 427
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.00 E-value=1 Score=43.26 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=19.9
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||.+.|++.+
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 35 VTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 36899999999999999997643
No 428
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=79.99 E-value=1 Score=42.08 Aligned_cols=23 Identities=30% Similarity=0.153 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 33 ~~~I~G~nGsGKStLl~~l~G~~ 55 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIGGLR 55 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 45899999999999999998754
No 429
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=79.95 E-value=1.5 Score=45.50 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=29.5
Q ss_pred hccccCCCCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 85 ~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
|.+..|..-.+.||+.|-|.+||||++.++.+.+
T Consensus 8 kDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~ 41 (492)
T TIGR02836 8 KDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELL 41 (492)
T ss_pred HHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhh
Confidence 4577778889999999999999999999997653
No 430
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.82 E-value=1 Score=43.43 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 45 ~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 45 TALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5899999999999999997653
No 431
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=79.75 E-value=1.1 Score=43.11 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.0
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..++++||+-++||||++.-|+
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL 34 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLL 34 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999983
No 432
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.73 E-value=1 Score=42.87 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||...|++.
T Consensus 33 ~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 33 TALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999775
No 433
>PRK06547 hypothetical protein; Provisional
Probab=79.70 E-value=1.3 Score=40.15 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=21.2
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
++...|+|.|-.++||||++..|...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44567788899999999999999543
No 434
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=79.69 E-value=1.1 Score=40.30 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=18.3
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
-|+++|-.++||||++..|..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999963
No 435
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=79.68 E-value=1 Score=41.48 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 35899999999999999997754
No 436
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=79.66 E-value=1 Score=42.55 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 31 ~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 31 VAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 6899999999999999998754
No 437
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.63 E-value=1 Score=42.94 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.6
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 33 ~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 33 FALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 5899999999999999997753
No 438
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=79.61 E-value=1.1 Score=43.40 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 48 ~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 48 TAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 5899999999999999997754
No 439
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=79.61 E-value=1 Score=43.17 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|+.++|||||...|++.+
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHccc
Confidence 36899999999999999997754
No 440
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=79.59 E-value=1.6 Score=45.46 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=20.3
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..-|+++|..++|||||..+|++
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ 180 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSN 180 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHc
Confidence 34899999999999999999954
No 441
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=79.57 E-value=1 Score=43.25 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=19.6
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 30 LVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999997743
No 442
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=79.54 E-value=0.99 Score=43.52 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.0
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 35899999999999999997753
No 443
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.53 E-value=1.1 Score=43.19 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||+..|++.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 36 ITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHccc
Confidence 46899999999999999997754
No 444
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=79.50 E-value=1 Score=43.24 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 33 ~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 33 VALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 6899999999999999997754
No 445
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=79.46 E-value=1.2 Score=38.55 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.9
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
..|+++|..++|||||+.++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~ 22 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFV 22 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999994
No 446
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=79.45 E-value=1.1 Score=43.20 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999997754
No 447
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=79.44 E-value=1.2 Score=44.80 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=23.8
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.+...-|++.|-.++|||||+.+|...+.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44567889999999999999999965543
No 448
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=79.42 E-value=1 Score=44.38 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.2
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|+.++|||||+..|++.+.
T Consensus 31 ~~l~G~NGaGKTTLl~~l~Gl~~ 53 (301)
T TIGR03522 31 VGFLGPNGAGKSTTMKIITGYLP 53 (301)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 68999999999999999977543
No 449
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=79.40 E-value=1.3 Score=40.33 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.1
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
-|+++|--++|||||+.+|...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHH
Confidence 4689999999999999999543
No 450
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=79.39 E-value=1 Score=43.55 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||.+.|++.+
T Consensus 38 ~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 38 VAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999997754
No 451
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=79.39 E-value=1.1 Score=42.14 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=20.3
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999997754
No 452
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=79.38 E-value=3.3 Score=44.98 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=15.9
Q ss_pred HHHHcCCCEEEEEeccCCCC
Q psy9643 223 VMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 223 ll~~lGv~~II~~n~~G~l~ 242 (412)
-+...|++.+++.||+|..+
T Consensus 94 ql~~~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 94 QLLELGIPMILALNLVDEAE 113 (591)
T ss_pred HHHhcCCCEEEEEehhHHHH
Confidence 34567999999999999754
No 453
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=79.36 E-value=1 Score=43.74 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 36899999999999999997754
No 454
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=79.33 E-value=1.2 Score=39.26 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.2
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..|+++|..++|||||+.++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~ 23 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSK 23 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999943
No 455
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=79.30 E-value=1.1 Score=43.15 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.0
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 41 ~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 41 VTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 35899999999999999997754
No 456
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=79.30 E-value=1.2 Score=39.74 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.4
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||...|++.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999664
No 457
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=79.29 E-value=1 Score=45.37 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|..++|||||...|++.+.
T Consensus 34 ~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 34 FGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 58999999999999999987653
No 458
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=79.21 E-value=1.2 Score=39.03 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=19.3
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
+.|+++|..++|||||+.+++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~ 22 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYA 22 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 578999999999999999994
No 459
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=79.12 E-value=1.1 Score=41.68 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.0
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||.+.|++.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 45899999999999999997754
No 460
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=79.11 E-value=1.1 Score=38.87 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=17.6
Q ss_pred EEeeecccCCChhhhhHHhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~ 116 (412)
|.+.|..++||||++..|..
T Consensus 2 i~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHh
Confidence 56889999999999999954
No 461
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=79.09 E-value=1.1 Score=42.14 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=19.1
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||...|++.
T Consensus 51 ~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 51 IGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999764
No 462
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=79.09 E-value=1.1 Score=43.52 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=19.9
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 52 ~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 36899999999999999997753
No 463
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=79.08 E-value=1.1 Score=43.76 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 36 ~~i~G~nGaGKSTLl~~i~G~~ 57 (279)
T PRK13635 36 VAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 5899999999999999997754
No 464
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=79.08 E-value=1.1 Score=42.63 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||...|++.
T Consensus 32 ~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 32 TALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999764
No 465
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=79.05 E-value=1.1 Score=43.71 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|..++|||||...|++.+.
T Consensus 39 ~~l~G~nGsGKSTLl~~l~Gl~~ 61 (280)
T PRK13633 39 LVILGRNGSGKSTIAKHMNALLI 61 (280)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 68999999999999999987543
No 466
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=79.03 E-value=1.1 Score=43.36 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|.+.+
T Consensus 52 ~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 52 VTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 35899999999999999997754
No 467
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=79.01 E-value=1.1 Score=42.93 Aligned_cols=22 Identities=41% Similarity=0.672 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 35 ~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 35 LGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999998754
No 468
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=79.00 E-value=1.1 Score=40.39 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.3
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 28 ~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 28 VGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999997643
No 469
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=78.89 E-value=1.1 Score=42.14 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.8
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35899999999999999997643
No 470
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=78.89 E-value=1.1 Score=43.06 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.2
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
+.++||.++|||||..-+.|.
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999988663
No 471
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=78.88 E-value=1.2 Score=40.07 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=18.5
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
|++.|-.++||||++.+|.+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999544
No 472
>KOG0979|consensus
Probab=78.87 E-value=1.6 Score=49.06 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=30.4
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLD 140 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~ 140 (412)
-|++|. ||||.++||||++.+++ |.-|+.. .-+.+.++.-+||+.
T Consensus 41 gpsLNm-IiGpNGSGKSSiVcAIc--LglgG~P-k~lGRak~VgeyIK~ 85 (1072)
T KOG0979|consen 41 GPSLNM-IIGPNGSGKSSIVCAIC--LGLGGKP-KLLGRAKKVGEYIKR 85 (1072)
T ss_pred CCceee-EECCCCCCchHHHHHHH--HHcCCCh-hhccchhHHHHHHhc
Confidence 468896 89999999999999995 3333332 223445556667653
No 473
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=78.86 E-value=1.6 Score=39.30 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.9
Q ss_pred CCCeeeEEeeecccCCChhhhhHH
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l 114 (412)
++.+.+|.++|--++||||+..+|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l 34 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRL 34 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHH
T ss_pred cCcEEEEEEECCCccchHHHHHHh
Confidence 355899999999999999999999
No 474
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.84 E-value=1.2 Score=42.87 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.6
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||...|++.
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~Gl 56 (261)
T PRK14258 35 VTAIIGPSGCGKSTFLKCLNRM 56 (261)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4689999999999999999764
No 475
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=78.80 E-value=1.1 Score=41.53 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 35899999999999999997754
No 476
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.77 E-value=1.1 Score=42.54 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 32 ~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 32 TALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 6899999999999999997754
No 477
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=78.75 E-value=1.1 Score=42.82 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|.+.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999997754
No 478
>KOG3347|consensus
Probab=78.74 E-value=1.4 Score=39.50 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.4
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...-||.+.|-.+.|||||+.+|..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 3456899999999999999999954
No 479
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=78.73 E-value=1.1 Score=42.87 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 29 LTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 35899999999999999998754
No 480
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=78.69 E-value=1.2 Score=44.19 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.1
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...||+++|-.++||||++.+|++
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~ 166 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVD 166 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 356999999999999999999954
No 481
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=78.66 E-value=1.2 Score=42.11 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.8
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||...|++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999875
No 482
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=78.61 E-value=3.3 Score=42.90 Aligned_cols=101 Identities=23% Similarity=0.262 Sum_probs=61.0
Q ss_pred cCC--CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCC-----CCCCccCccc-cchhhccccccccccccc
Q psy9643 7 DAA--DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE-----PEIGIIPLYP-NDKFEINKLNVFVPLINS 78 (412)
Q Consensus 7 d~~--d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 78 (412)
|+. +++-++.++.|+++++.++||+.++.|++.-||+...+=.+ +|+.-..++. -+.+..++++ .++
T Consensus 152 Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~~~~~~~~-----~~~ 226 (426)
T TIGR00483 152 DSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDALEPPEKP-----TDK 226 (426)
T ss_pred hccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhcCCCCCCc-----cCC
Confidence 884 67778888899999999999998889999999987642111 2332222221 1112222222 345
Q ss_pred cchhhhhccccCCCCeeeEEeeecccCCChhhhhHH
Q psy9643 79 RRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 79 ~~~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l 114 (412)
++.|++.+++.-.- .-.++.|.|-+|+=..-..+
T Consensus 227 p~r~~i~~v~~~~g--~G~vv~G~v~~G~i~~gd~v 260 (426)
T TIGR00483 227 PLRIPIQDVYSITG--VGTVPVGRVETGVLKPGDKV 260 (426)
T ss_pred CcEEEEEEEEecCC--CeEEEEEEEccceeecCCEE
Confidence 56677776664322 22356788877754444333
No 483
>PRK15453 phosphoribulokinase; Provisional
Probab=78.55 E-value=1.4 Score=43.50 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=23.6
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
+.+.+|++.|-.++||||++.+|...+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3478899999999999999999966553
No 484
>PRK06762 hypothetical protein; Provisional
Probab=78.54 E-value=1.2 Score=39.52 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=18.6
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
-|++.|-.++||||++..|...
T Consensus 4 li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999543
No 485
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=78.51 E-value=1.2 Score=44.04 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.2
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..||.+.|-.++||||++.+|+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~ 153 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALL 153 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5699999999999999999994
No 486
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=78.49 E-value=1.2 Score=41.62 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35899999999999999997754
No 487
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=78.41 E-value=1.2 Score=42.20 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.0
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 35899999999999999997754
No 488
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=78.39 E-value=1.3 Score=39.91 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.0
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|.+.+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 36899999999999999997754
No 489
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=78.38 E-value=1.3 Score=41.98 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||.+.|++.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999997753
No 490
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.37 E-value=1.2 Score=42.39 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.5
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||...|++.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3689999999999999999764
No 491
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=78.36 E-value=1.2 Score=41.77 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=19.9
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 35899999999999999997743
No 492
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=78.36 E-value=1.2 Score=40.47 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.2
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
|++.|-.++||||++..|...+
T Consensus 2 i~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999996554
No 493
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=78.35 E-value=1.2 Score=42.91 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.3
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||...|++.
T Consensus 38 ~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 38 ITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3689999999999999999764
No 494
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.32 E-value=1.2 Score=42.12 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|-.++|||||...|++.+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 31 VALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999997754
No 495
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.21 E-value=1.2 Score=43.51 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.3
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl~ 56 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGIL 56 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 35899999999999999998764
No 496
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.15 E-value=1.2 Score=43.60 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.5
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||...|++.
T Consensus 67 ~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 67 VTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3589999999999999999774
No 497
>PRK04182 cytidylate kinase; Provisional
Probab=78.15 E-value=1.4 Score=39.21 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.0
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.|+++|..++||||++..|...+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999996544
No 498
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.10 E-value=1.3 Score=41.69 Aligned_cols=23 Identities=30% Similarity=0.188 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||...|++.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999997653
No 499
>KOG3728|consensus
Probab=78.03 E-value=4 Score=38.93 Aligned_cols=165 Identities=14% Similarity=0.186 Sum_probs=96.1
Q ss_pred HHHHHHcCCCE--EEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHH
Q psy9643 221 IRVMKLVGVTH--LLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDI 298 (412)
Q Consensus 221 i~ll~~lGv~~--II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~ 298 (412)
+.+++..+|+. +|.++.+|++- +.||.+|+.++.+|-.-. .. +.- -..|.+... ..-.|+.|++.+...
T Consensus 121 iKLl~~Arckdp~~iRiGT~GGiG--v~pGTvV~s~~A~n~~l~--~e-~eq---iilGkrv~R-paqld~~l~~eL~~~ 191 (308)
T KOG3728|consen 121 IKLLYYARCKDPVFIRIGTCGGIG--VPPGTVVASKNAFNGLLR--NE-HEQ---IILGKRVVR-PAQLDKKLIRELLAF 191 (308)
T ss_pred HHHHHHccCCCceEEEEeccCccC--CCCccEEEehhhhhhhhh--hh-HHh---hhccceeec-hhhhhHHHHHHHHHh
Confidence 57888889886 66699999986 889999888887764321 00 000 001322221 234688888888888
Q ss_pred HHHc--CCCcceeeceEEEE----------ecCc--cCCHHHHHHH---HHcCCcEEeCchhHHHHHHHHcCCcEEEEEe
Q psy9643 299 ARDL--NMSSIVKEGVYSVI----------GGPN--FETVAELNML---RICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361 (412)
Q Consensus 299 a~~~--g~~~~~~~Gvy~~~----------~GP~--feT~AE~~~~---~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~ 361 (412)
..+. ++. .-.|--.|+ +|-- |+-.....++ ..+|.--+|||+.--|.++...|+..+.+++
T Consensus 192 ~~e~~d~~~--ti~gnTmctddFYEGQgRlDGa~CdysEkdK~afLek~~a~GVrNIEMEss~FAs~t~~~G~kaavVCV 269 (308)
T KOG3728|consen 192 GVEANDGFQ--TISGNTMCTDDFYEGQGRLDGAFCDYSEKDKMAFLEKLHALGVRNIEMESSMFASVTQKAGVKAAVVCV 269 (308)
T ss_pred CCccCCCCc--eeeccceecchhhcccccccccccCcchhhHHHHHHHHHHcCceeeehhHHHHHHHHHhcCcchhhhHH
Confidence 7776 444 122222221 1110 1111122334 4579999999999999999999999887764
Q ss_pred -eeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 362 -ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 362 -VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
.-|...| ++-....++.... .++=..++...|+++
T Consensus 270 tLlnRl~G----DQi~~~ke~~~Ey---eqRP~~lVs~yIkk~ 305 (308)
T KOG3728|consen 270 TLLNRLKG----DQITIPKEQKHEY---EQRPFRLVSRYIKKL 305 (308)
T ss_pred HHHhhccC----CcccchHHHHHHH---HhccHHHHHHHHHHH
Confidence 2344432 2222333333322 333455677766654
No 500
>PLN03110 Rab GTPase; Provisional
Probab=77.96 E-value=1.5 Score=40.90 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.9
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..+.|+++|+.++|||||+.+++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~ 33 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFT 33 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHh
Confidence 46799999999999999999994
Done!