Query psy9643
Match_columns 412
No_of_seqs 391 out of 3277
Neff 7.0
Searched_HMMs 29240
Date Sat Aug 17 00:56:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fuc_A Purine nucleoside phosp 100.0 4.9E-65 1.7E-69 494.2 23.5 279 126-404 5-283 (284)
2 3khs_A Purine nucleoside phosp 100.0 4.6E-65 1.6E-69 494.9 22.2 280 127-406 3-282 (285)
3 3phb_E Purine nucleoside phosp 100.0 8.7E-65 3E-69 498.3 23.3 282 126-407 40-321 (324)
4 3la8_A SMU.1229, putative puri 100.0 2.6E-64 8.9E-69 489.9 19.7 267 127-403 37-303 (303)
5 3odg_A Xanthosine phosphorylas 100.0 1.4E-61 4.9E-66 470.2 25.6 269 128-403 15-284 (287)
6 1vmk_A Purine nucleoside phosp 100.0 3E-60 1E-64 459.1 21.9 264 128-403 14-277 (277)
7 1tcv_A Purine-nucleoside phosp 100.0 8.5E-60 2.9E-64 458.9 21.2 275 127-406 8-287 (287)
8 2p4s_A Purine nucleoside phosp 100.0 6.9E-57 2.4E-61 449.0 23.3 279 127-405 91-369 (373)
9 1g2o_A Purine nucleoside phosp 100.0 1.6E-56 5.3E-61 431.9 22.1 259 127-403 8-268 (268)
10 1qe5_A Pentosyltransferase; en 100.0 2.4E-54 8.1E-59 416.3 20.7 249 127-401 10-265 (266)
11 3ozb_A Methylthioadenosine pho 100.0 1.6E-49 5.5E-54 381.2 21.2 238 144-401 14-258 (259)
12 1wta_A 5'-methylthioadenosine 100.0 5.4E-46 1.8E-50 360.3 20.2 245 138-406 4-258 (275)
13 2a8y_A 5'-methylthioadenosine 100.0 2.2E-45 7.6E-50 355.1 21.9 240 145-406 7-253 (270)
14 1cb0_A Protein (5'-deoxy-5'-me 100.0 2E-40 7E-45 322.6 23.3 247 144-405 8-260 (283)
15 3nm6_B MTA/SAH nucleosidase; h 99.9 5.6E-26 1.9E-30 213.6 12.1 192 188-403 34-230 (230)
16 3o4v_A MTA/SAH nucleosidase; m 99.9 9.9E-25 3.4E-29 205.8 15.2 191 188-404 34-232 (234)
17 3dp9_A MTA/SAH nucleosidase; v 99.9 5.6E-25 1.9E-29 207.0 13.2 191 188-403 32-230 (231)
18 2h8g_A 5'-methylthioadenosine 99.9 2.9E-25 9.9E-30 214.1 11.4 198 188-410 63-266 (267)
19 3bsf_A AT4G34840, nucleosidase 99.9 2.5E-25 8.6E-30 212.8 9.7 198 188-410 50-253 (254)
20 3eei_A 5-methylthioadenosine n 99.9 1.6E-24 5.6E-29 204.1 12.5 193 188-403 35-233 (233)
21 4g41_A MTA/SAH nucleosidase; m 99.9 3.1E-24 1E-28 202.5 13.6 193 188-404 37-235 (236)
22 3bl6_A 5'-methylthioadenosine 99.9 3.3E-24 1.1E-28 201.3 12.3 190 188-403 33-230 (230)
23 1zos_A 5'-methylthioadenosine 99.9 1.2E-23 3.9E-28 197.5 15.1 190 188-403 32-229 (230)
24 1odk_A Purine nucleoside phosp 99.9 4.6E-23 1.6E-27 194.6 11.6 183 188-395 47-231 (235)
25 1z34_A Purine nucleoside phosp 99.9 6.2E-23 2.1E-27 193.8 11.7 182 188-396 46-232 (235)
26 2b94_A Purine nucleoside phosp 99.9 3.9E-23 1.3E-27 199.1 10.4 188 146-367 39-233 (267)
27 1je0_A MTAP;, 5'-methylthioade 99.9 4.4E-23 1.5E-27 194.8 9.7 180 188-391 46-229 (236)
28 1vhw_A Purine nucleoside phosp 99.9 1.1E-22 3.8E-27 194.4 12.3 185 188-399 49-238 (253)
29 3uaw_A PNP, purine nucleoside 99.9 1E-22 3.5E-27 192.7 10.5 180 188-391 46-227 (235)
30 3u40_A Pnpase, purine nucleosi 99.9 1.2E-22 4.3E-27 193.0 10.2 180 188-391 55-236 (242)
31 1ybf_A AMP nucleosidase; struc 99.9 3E-22 1E-26 193.0 11.8 200 131-367 7-213 (268)
32 3phc_A Purine nucleoside phosp 99.9 2.6E-22 9E-27 194.0 9.1 160 188-367 49-211 (275)
33 3ddo_A Urdpase, upase, uridine 99.9 6.1E-22 2.1E-26 189.4 10.6 158 188-367 51-224 (253)
34 3qpb_A Uridine phosphorylase; 99.9 6.7E-22 2.3E-26 191.9 9.7 161 188-368 77-249 (282)
35 3mb8_A Purine nucleoside phosp 99.8 7E-21 2.4E-25 184.4 9.7 192 188-401 53-248 (279)
36 1t8s_A AMP nucleosidase; alpha 99.8 9.4E-19 3.2E-23 180.1 11.6 188 188-403 262-463 (484)
37 3bje_A Nucleoside phosphorylas 99.6 5.7E-15 2E-19 146.9 10.0 168 188-367 77-320 (349)
38 3euf_A Uridine phosphorylase 1 99.6 3.3E-15 1.1E-19 147.5 7.8 186 193-402 115-323 (328)
39 3p0f_A Uridine phosphorylase 2 99.6 4.2E-15 1.4E-19 145.0 7.9 186 193-402 86-294 (297)
40 3vqt_A RF-3, peptide chain rel 99.5 1.4E-15 4.7E-20 160.2 2.4 120 94-242 31-166 (548)
41 3j25_A Tetracycline resistance 99.5 5.5E-16 1.9E-20 166.1 -6.0 121 94-244 2-135 (638)
42 3j2k_7 ERF3, eukaryotic polype 99.4 6E-14 2E-18 144.0 6.4 148 89-250 12-177 (439)
43 4fn5_A EF-G 1, elongation fact 99.4 2E-14 6.7E-19 155.9 1.7 128 94-243 13-152 (709)
44 1r5b_A Eukaryotic peptide chai 99.3 6.5E-13 2.2E-17 137.3 6.7 142 91-246 40-199 (467)
45 3mca_A HBS1, elongation factor 99.2 1.6E-12 5.3E-17 138.2 1.6 139 89-242 172-329 (592)
46 1f60_A Elongation factor EEF1A 99.2 1.8E-12 6E-17 133.7 0.9 140 89-242 2-159 (458)
47 1jny_A EF-1-alpha, elongation 99.2 9.3E-12 3.2E-16 127.4 4.3 142 91-246 3-162 (435)
48 3p26_A Elongation factor 1 alp 99.1 2.6E-11 9E-16 125.6 2.5 139 89-242 28-185 (483)
49 1d2e_A Elongation factor TU (E 99.1 2.1E-11 7.3E-16 123.2 1.1 118 92-242 1-133 (397)
50 1zun_B Sulfate adenylate trans 99.1 2.7E-11 9.2E-16 123.9 1.9 126 90-242 20-171 (434)
51 3izq_1 HBS1P, elongation facto 99.0 4.1E-11 1.4E-15 127.7 0.7 142 86-242 159-319 (611)
52 1s0u_A EIF-2-gamma, translatio 99.0 7.6E-11 2.6E-15 119.5 2.0 144 91-258 5-165 (408)
53 2c78_A Elongation factor TU-A; 99.0 5.3E-11 1.8E-15 120.5 -0.5 124 86-242 3-142 (405)
54 3avx_A Elongation factor TS, e 99.0 1.4E-10 4.6E-15 129.9 2.6 123 87-242 289-426 (1289)
55 3cb4_D GTP-binding protein LEP 99.0 1.6E-10 5.6E-15 122.6 3.0 126 93-243 3-138 (599)
56 2ywe_A GTP-binding protein LEP 99.0 1.9E-10 6.4E-15 122.1 3.0 119 93-243 5-140 (600)
57 1kk1_A EIF2gamma; initiation o 98.9 6.9E-11 2.4E-15 119.9 -0.9 121 90-243 6-152 (410)
58 1wb1_A Translation elongation 98.9 2E-10 6.7E-15 119.2 1.1 111 92-242 17-139 (482)
59 2elf_A Protein translation elo 98.7 4.3E-09 1.5E-13 105.5 3.5 90 96-240 23-125 (370)
60 2rdo_7 EF-G, elongation factor 98.7 4.9E-09 1.7E-13 113.5 4.2 130 92-243 8-149 (704)
61 2h5e_A Peptide chain release f 98.6 1.1E-08 3.7E-13 107.3 3.4 131 93-243 12-149 (529)
62 1zo1_I IF2, translation initia 98.6 6.6E-08 2.2E-12 100.5 6.8 109 94-242 4-117 (501)
63 1n0u_A EF-2, elongation factor 98.5 1.2E-08 4.3E-13 112.3 0.5 141 90-244 15-166 (842)
64 1dar_A EF-G, elongation factor 98.5 4.7E-08 1.6E-12 105.5 3.7 128 93-243 11-144 (691)
65 3tr5_A RF-3, peptide chain rel 98.4 2.5E-08 8.4E-13 104.5 -0.7 127 94-242 13-148 (528)
66 2xex_A Elongation factor G; GT 98.3 3.2E-07 1.1E-11 99.1 4.8 129 93-243 9-142 (693)
67 3sjy_A Translation initiation 98.3 2.7E-07 9.1E-12 93.2 3.0 28 90-117 4-31 (403)
68 3izy_P Translation initiation 98.1 5.5E-07 1.9E-11 94.4 1.2 112 95-244 5-120 (537)
69 1g7s_A Translation initiation 98.1 1.4E-06 4.7E-11 92.5 3.0 22 94-115 5-26 (594)
70 2dy1_A Elongation factor G; tr 97.9 1E-06 3.5E-11 94.7 -0.7 123 93-241 8-139 (665)
71 3qq5_A Small GTP-binding prote 97.5 7.4E-05 2.5E-09 76.0 4.7 114 92-244 32-156 (423)
72 1vg8_A RAS-related protein RAB 96.7 0.0011 3.8E-08 58.8 4.1 26 91-116 5-30 (207)
73 3def_A T7I23.11 protein; chlor 96.6 0.00082 2.8E-08 63.2 2.9 25 91-115 33-57 (262)
74 2lkc_A Translation initiation 96.5 0.0013 4.6E-08 56.6 3.5 25 92-116 6-30 (178)
75 2g6b_A RAS-related protein RAB 96.5 0.002 6.7E-08 55.7 4.5 25 92-116 8-32 (180)
76 1h65_A Chloroplast outer envel 96.4 0.0029 9.9E-08 59.6 5.4 25 91-115 36-60 (270)
77 3i8s_A Ferrous iron transport 96.3 0.002 6.7E-08 61.2 3.4 23 94-116 3-25 (274)
78 2x77_A ADP-ribosylation factor 96.3 0.0034 1.2E-07 55.0 4.5 23 92-114 20-42 (189)
79 4bas_A ADP-ribosylation factor 96.1 0.0053 1.8E-07 53.9 5.1 26 90-115 13-38 (199)
80 2hjg_A GTP-binding protein ENG 96.1 0.0013 4.4E-08 66.8 1.0 24 93-116 174-197 (436)
81 4dhe_A Probable GTP-binding pr 96.1 0.0017 5.7E-08 58.6 1.5 24 93-116 28-51 (223)
82 3gj0_A GTP-binding nuclear pro 96.1 0.0016 5.5E-08 58.9 1.4 24 91-114 12-35 (221)
83 2fg5_A RAB-22B, RAS-related pr 96.0 0.0034 1.2E-07 55.4 3.1 25 92-116 21-45 (192)
84 2gf9_A RAS-related protein RAB 96.0 0.0027 9.3E-08 55.7 2.4 25 92-116 20-44 (189)
85 3tkl_A RAS-related protein RAB 96.0 0.0025 8.6E-08 55.9 2.1 24 92-115 14-37 (196)
86 3l0i_B RAS-related protein RAB 95.8 0.0039 1.3E-07 55.3 2.6 24 92-115 31-54 (199)
87 3q72_A GTP-binding protein RAD 95.6 0.012 4.2E-07 49.8 4.9 22 94-115 2-23 (166)
88 1d2e_A Elongation factor TU (E 95.4 0.011 3.7E-07 59.2 4.5 94 7-107 130-229 (397)
89 3iev_A GTP-binding protein ERA 95.4 0.0021 7E-08 62.2 -0.9 26 91-116 7-32 (308)
90 3o47_A ADP-ribosylation factor 95.4 0.012 4.1E-07 57.3 4.6 24 92-115 163-186 (329)
91 4dcu_A GTP-binding protein ENG 94.8 0.011 3.6E-07 60.3 2.5 25 91-115 192-216 (456)
92 3lvq_E ARF-GAP with SH3 domain 94.6 0.066 2.3E-06 54.7 7.7 25 92-116 320-344 (497)
93 2xtp_A GTPase IMAP family memb 94.4 0.017 5.7E-07 53.7 2.5 25 91-115 19-43 (260)
94 3gee_A MNME, tRNA modification 94.1 0.049 1.7E-06 56.0 5.5 23 93-115 232-254 (476)
95 2c78_A Elongation factor TU-A; 93.6 0.03 1E-06 56.0 2.9 41 7-47 139-180 (405)
96 2fh5_B SR-beta, signal recogni 93.6 0.025 8.5E-07 50.4 2.0 27 90-116 3-29 (214)
97 3clv_A RAB5 protein, putative; 93.5 0.034 1.2E-06 48.3 2.7 26 92-117 5-30 (208)
98 1ky3_A GTP-binding protein YPT 93.4 0.033 1.1E-06 47.6 2.4 26 91-116 5-30 (182)
99 1wms_A RAB-9, RAB9, RAS-relate 93.4 0.029 1E-06 47.9 2.0 25 91-115 4-28 (177)
100 2gf0_A GTP-binding protein DI- 93.4 0.037 1.3E-06 48.3 2.7 26 91-116 5-30 (199)
101 2bov_A RAla, RAS-related prote 93.3 0.038 1.3E-06 48.6 2.7 26 90-115 10-35 (206)
102 3avx_A Elongation factor TS, e 93.2 0.031 1.1E-06 63.3 2.3 93 7-106 423-519 (1289)
103 3kkq_A RAS-related protein M-R 93.2 0.04 1.4E-06 47.5 2.6 27 89-115 13-39 (183)
104 2oil_A CATX-8, RAS-related pro 93.2 0.037 1.3E-06 48.3 2.4 26 91-116 22-47 (193)
105 1ega_A Protein (GTP-binding pr 93.1 0.032 1.1E-06 53.6 2.0 23 94-116 8-30 (301)
106 3dpu_A RAB family protein; roc 93.1 0.052 1.8E-06 56.2 3.7 25 92-116 39-63 (535)
107 1kao_A RAP2A; GTP-binding prot 93.0 0.041 1.4E-06 46.1 2.4 22 94-115 3-24 (167)
108 2fn4_A P23, RAS-related protei 93.0 0.051 1.7E-06 46.4 2.9 24 93-116 8-31 (181)
109 1u8z_A RAS-related protein RAL 92.9 0.044 1.5E-06 46.0 2.4 23 93-115 3-25 (168)
110 4dcu_A GTP-binding protein ENG 92.6 0.044 1.5E-06 55.7 2.3 23 94-116 23-45 (456)
111 2hjg_A GTP-binding protein ENG 92.6 0.021 7.3E-07 57.7 -0.1 21 95-115 4-24 (436)
112 1c1y_A RAS-related protein RAP 92.5 0.052 1.8E-06 45.6 2.4 23 94-116 3-25 (167)
113 2hxs_A RAB-26, RAS-related pro 92.5 0.066 2.2E-06 45.7 3.0 25 91-115 3-27 (178)
114 1ek0_A Protein (GTP-binding pr 92.5 0.047 1.6E-06 46.0 2.0 23 93-115 2-24 (170)
115 3k53_A Ferrous iron transport 92.4 0.053 1.8E-06 50.8 2.4 24 94-117 3-26 (271)
116 1z2a_A RAS-related protein RAB 92.3 0.058 2E-06 45.4 2.4 24 93-116 4-27 (168)
117 3bwd_D RAC-like GTP-binding pr 92.3 0.053 1.8E-06 46.5 2.1 24 92-115 6-29 (182)
118 2nzj_A GTP-binding protein REM 92.3 0.059 2E-06 45.8 2.4 23 93-115 3-25 (175)
119 2a9k_A RAS-related protein RAL 92.1 0.062 2.1E-06 46.1 2.4 25 91-115 15-39 (187)
120 1zd9_A ADP-ribosylation factor 92.1 0.06 2.1E-06 47.0 2.3 26 90-115 18-43 (188)
121 2ce2_X GTPase HRAS; signaling 92.1 0.069 2.3E-06 44.5 2.5 23 94-116 3-25 (166)
122 3c8u_A Fructokinase; YP_612366 92.0 0.091 3.1E-06 47.1 3.4 27 92-118 20-46 (208)
123 3bc1_A RAS-related protein RAB 92.0 0.069 2.4E-06 46.0 2.5 25 92-116 9-33 (195)
124 2wjg_A FEOB, ferrous iron tran 92.0 0.067 2.3E-06 46.3 2.4 23 94-116 7-29 (188)
125 1z0j_A RAB-22, RAS-related pro 91.9 0.059 2E-06 45.5 2.0 24 93-116 5-28 (170)
126 4dsu_A GTPase KRAS, isoform 2B 91.9 0.062 2.1E-06 46.3 2.1 25 92-116 2-26 (189)
127 3tw8_B RAS-related protein RAB 91.9 0.061 2.1E-06 45.8 2.0 24 92-115 7-30 (181)
128 1r2q_A RAS-related protein RAB 91.8 0.052 1.8E-06 45.7 1.5 24 93-116 5-28 (170)
129 1moz_A ARL1, ADP-ribosylation 91.8 0.064 2.2E-06 46.1 2.1 24 92-115 16-39 (183)
130 1upt_A ARL1, ADP-ribosylation 91.8 0.082 2.8E-06 44.7 2.7 24 92-115 5-28 (171)
131 1z08_A RAS-related protein RAB 91.7 0.07 2.4E-06 45.1 2.2 24 92-115 4-27 (170)
132 1zj6_A ADP-ribosylation factor 91.7 0.083 2.9E-06 45.8 2.7 24 92-115 14-37 (187)
133 2erx_A GTP-binding protein DI- 91.6 0.077 2.6E-06 44.7 2.4 23 94-116 3-25 (172)
134 3lxw_A GTPase IMAP family memb 91.6 0.072 2.5E-06 49.4 2.3 27 90-116 17-43 (247)
135 1z0f_A RAB14, member RAS oncog 91.6 0.077 2.6E-06 45.1 2.4 25 92-116 13-37 (179)
136 1mh1_A RAC1; GTP-binding, GTPa 91.6 0.077 2.6E-06 45.5 2.3 23 93-115 4-26 (186)
137 2efe_B Small GTP-binding prote 91.6 0.074 2.5E-06 45.5 2.2 25 91-115 9-33 (181)
138 1ksh_A ARF-like protein 2; sma 91.5 0.074 2.5E-06 46.0 2.2 24 92-115 16-39 (186)
139 1z06_A RAS-related protein RAB 91.5 0.081 2.8E-06 46.0 2.4 24 92-115 18-41 (189)
140 2y8e_A RAB-protein 6, GH09086P 91.4 0.082 2.8E-06 44.9 2.3 23 93-115 13-35 (179)
141 2bme_A RAB4A, RAS-related prot 91.3 0.096 3.3E-06 45.1 2.7 24 92-115 8-31 (186)
142 2o52_A RAS-related protein RAB 91.3 0.085 2.9E-06 46.6 2.3 24 92-115 23-46 (200)
143 1m7b_A RND3/RHOE small GTP-bin 91.2 0.095 3.2E-06 45.4 2.5 26 91-116 4-29 (184)
144 3lxx_A GTPase IMAP family memb 91.1 0.088 3E-06 48.1 2.4 25 92-116 27-51 (239)
145 2j1l_A RHO-related GTP-binding 91.0 0.098 3.3E-06 46.8 2.5 26 90-115 30-55 (214)
146 2p5s_A RAS and EF-hand domain 91.0 0.087 3E-06 46.4 2.1 26 91-116 25-50 (199)
147 1svi_A GTP-binding protein YSX 90.9 0.11 3.7E-06 45.2 2.7 23 93-115 22-44 (195)
148 3t5g_A GTP-binding protein RHE 90.9 0.084 2.9E-06 45.3 1.9 23 93-115 5-27 (181)
149 2h17_A ADP-ribosylation factor 90.9 0.095 3.2E-06 45.3 2.2 24 92-115 19-42 (181)
150 1g16_A RAS-related protein SEC 90.9 0.11 3.7E-06 43.8 2.5 22 94-115 3-24 (170)
151 1ye8_A Protein THEP1, hypothet 90.8 0.087 3E-06 46.6 1.9 23 96-118 2-24 (178)
152 2wsm_A Hydrogenase expression/ 90.7 0.11 3.6E-06 46.5 2.5 24 94-117 30-53 (221)
153 2wji_A Ferrous iron transport 90.7 0.1 3.5E-06 44.5 2.3 23 94-116 3-25 (165)
154 2a5j_A RAS-related protein RAB 90.7 0.11 3.8E-06 45.3 2.5 26 91-116 18-43 (191)
155 2atv_A RERG, RAS-like estrogen 90.6 0.1 3.6E-06 45.6 2.3 25 92-116 26-50 (196)
156 2b6h_A ADP-ribosylation factor 90.6 0.12 4E-06 45.5 2.5 24 92-115 27-50 (192)
157 3reg_A RHO-like small GTPase; 90.5 0.1 3.6E-06 45.5 2.2 27 90-116 19-45 (194)
158 4gzl_A RAS-related C3 botulinu 90.4 0.11 3.8E-06 46.0 2.3 25 91-115 27-51 (204)
159 1m2o_B GTP-binding protein SAR 90.4 0.11 3.7E-06 45.6 2.1 24 92-115 21-44 (190)
160 3sop_A Neuronal-specific septi 90.4 0.11 3.8E-06 49.1 2.4 25 94-118 2-26 (270)
161 2f7s_A C25KG, RAS-related prot 90.3 0.11 3.8E-06 46.2 2.2 24 92-115 23-46 (217)
162 3oes_A GTPase rhebl1; small GT 90.3 0.13 4.3E-06 45.4 2.5 25 92-116 22-46 (201)
163 3con_A GTPase NRAS; structural 90.2 0.11 3.7E-06 45.0 2.0 24 93-116 20-43 (190)
164 4djt_A GTP-binding nuclear pro 90.2 0.076 2.6E-06 47.3 1.0 25 91-115 8-32 (218)
165 2q3h_A RAS homolog gene family 90.2 0.11 3.8E-06 45.5 2.0 25 91-115 17-41 (201)
166 2j0v_A RAC-like GTP-binding pr 90.2 0.15 5.2E-06 45.1 3.0 24 92-115 7-30 (212)
167 2fu5_C RAS-related protein RAB 90.1 0.11 3.7E-06 44.7 1.9 24 92-115 6-29 (183)
168 3t1o_A Gliding protein MGLA; G 90.1 0.11 3.9E-06 44.8 2.0 25 91-115 11-35 (198)
169 2h57_A ADP-ribosylation factor 90.1 0.1 3.5E-06 45.4 1.7 24 92-115 19-42 (190)
170 1x3s_A RAS-related protein RAB 90.0 0.12 3.9E-06 44.8 2.0 24 93-116 14-37 (195)
171 2bcg_Y Protein YP2, GTP-bindin 90.0 0.14 4.8E-06 45.1 2.6 25 92-116 6-30 (206)
172 1nrj_B SR-beta, signal recogni 90.0 0.13 4.3E-06 45.8 2.3 26 91-116 9-34 (218)
173 1pui_A ENGB, probable GTP-bind 90.0 0.094 3.2E-06 46.3 1.4 23 94-116 26-48 (210)
174 3asz_A Uridine kinase; cytidin 89.9 0.14 4.6E-06 45.7 2.4 24 94-117 6-29 (211)
175 1r8s_A ADP-ribosylation factor 89.8 0.12 4.2E-06 43.3 2.0 21 95-115 1-21 (164)
176 2il1_A RAB12; G-protein, GDP, 89.7 0.13 4.6E-06 44.9 2.2 23 93-115 25-47 (192)
177 1fzq_A ADP-ribosylation factor 89.7 0.17 5.8E-06 43.9 2.8 25 91-115 13-37 (181)
178 2fv8_A H6, RHO-related GTP-bin 89.7 0.14 4.7E-06 45.4 2.3 23 94-116 25-47 (207)
179 3a1s_A Iron(II) transport prot 89.7 0.13 4.4E-06 48.2 2.1 24 93-116 4-27 (258)
180 2atx_A Small GTP binding prote 89.7 0.11 3.7E-06 45.3 1.5 24 93-116 17-40 (194)
181 2cxx_A Probable GTP-binding pr 89.5 0.14 4.8E-06 44.1 2.1 22 95-116 2-23 (190)
182 1kag_A SKI, shikimate kinase I 89.4 0.14 4.6E-06 44.0 1.9 24 95-118 5-28 (173)
183 1zbd_A Rabphilin-3A; G protein 89.4 0.15 5.2E-06 44.7 2.3 23 94-116 8-30 (203)
184 1htw_A HI0065; nucleotide-bind 89.3 0.14 4.6E-06 44.5 1.9 24 95-118 34-57 (158)
185 2ged_A SR-beta, signal recogni 89.1 0.16 5.6E-06 44.0 2.3 25 92-116 46-70 (193)
186 3tr0_A Guanylate kinase, GMP k 89.1 0.14 4.9E-06 45.1 1.9 22 96-117 9-30 (205)
187 2f9l_A RAB11B, member RAS onco 89.0 0.16 5.5E-06 44.6 2.2 24 94-117 5-28 (199)
188 1knq_A Gluconate kinase; ALFA/ 89.0 0.19 6.5E-06 43.3 2.6 24 94-117 8-31 (175)
189 3pqc_A Probable GTP-binding pr 89.0 0.19 6.4E-06 43.3 2.6 24 93-116 22-45 (195)
190 2ew1_A RAS-related protein RAB 89.0 0.18 6.1E-06 44.9 2.5 25 92-116 24-48 (201)
191 1f6b_A SAR1; gtpases, N-termin 88.9 0.18 6.1E-06 44.5 2.4 24 92-115 23-46 (198)
192 1znw_A Guanylate kinase, GMP k 88.9 0.15 5E-06 45.7 1.8 23 96-118 22-44 (207)
193 3cph_A RAS-related protein SEC 88.7 0.17 5.9E-06 44.5 2.2 24 92-115 18-41 (213)
194 3t5d_A Septin-7; GTP-binding p 88.7 0.17 5.7E-06 47.5 2.2 21 94-114 8-28 (274)
195 2iwr_A Centaurin gamma 1; ANK 88.7 0.21 7.1E-06 42.6 2.6 25 92-116 5-29 (178)
196 3c5c_A RAS-like protein 12; GD 88.5 0.2 6.7E-06 43.7 2.4 27 90-116 17-43 (187)
197 4eun_A Thermoresistant glucoki 88.4 0.18 6.3E-06 44.7 2.1 25 94-118 29-53 (200)
198 2gco_A H9, RHO-related GTP-bin 88.4 0.21 7E-06 44.0 2.4 24 93-116 24-47 (201)
199 1wf3_A GTP-binding protein; GT 88.3 0.2 6.8E-06 48.1 2.4 23 94-116 7-29 (301)
200 3q85_A GTP-binding protein REM 88.3 0.19 6.4E-06 42.4 2.0 22 94-115 2-23 (169)
201 3cpj_B GTP-binding protein YPT 88.2 0.2 6.8E-06 45.0 2.3 25 92-116 11-35 (223)
202 2dyk_A GTP-binding protein; GT 88.2 0.2 6.8E-06 41.7 2.1 22 95-116 2-23 (161)
203 3dz8_A RAS-related protein RAB 88.1 0.19 6.6E-06 43.7 2.0 24 93-116 22-45 (191)
204 2hup_A RAS-related protein RAB 88.0 0.22 7.6E-06 43.9 2.4 24 92-115 27-50 (201)
205 2if2_A Dephospho-COA kinase; a 88.0 0.21 7E-06 44.2 2.2 21 96-116 3-23 (204)
206 1zp6_A Hypothetical protein AT 87.9 0.24 8.1E-06 43.2 2.5 23 95-117 10-32 (191)
207 3a00_A Guanylate kinase, GMP k 87.9 0.19 6.4E-06 44.1 1.8 21 97-117 4-24 (186)
208 2yvu_A Probable adenylyl-sulfa 87.8 0.25 8.6E-06 43.1 2.6 25 93-117 12-36 (186)
209 1jjv_A Dephospho-COA kinase; P 87.7 0.22 7.4E-06 44.2 2.2 22 95-116 3-24 (206)
210 2j41_A Guanylate kinase; GMP, 87.7 0.23 7.9E-06 43.7 2.3 23 95-117 7-29 (207)
211 2gj8_A MNME, tRNA modification 87.6 0.24 8.1E-06 42.7 2.3 24 93-116 3-26 (172)
212 1gwn_A RHO-related GTP-binding 87.6 0.25 8.6E-06 44.0 2.5 26 91-116 25-50 (205)
213 2yc2_C IFT27, small RAB-relate 87.5 0.12 4.2E-06 45.1 0.4 24 92-115 18-41 (208)
214 2pcj_A ABC transporter, lipopr 87.5 0.2 7E-06 45.8 1.9 22 97-118 33-54 (224)
215 3th5_A RAS-related C3 botulinu 87.3 0.11 3.7E-06 45.8 0.0 25 91-115 27-51 (204)
216 2jaq_A Deoxyguanosine kinase; 87.4 0.22 7.5E-06 43.6 2.0 22 96-117 2-23 (205)
217 2qag_A Septin-2, protein NEDD5 87.4 0.19 6.5E-06 49.5 1.7 23 93-115 36-58 (361)
218 1jwy_B Dynamin A GTPase domain 87.4 0.23 8E-06 47.0 2.3 24 94-117 24-47 (315)
219 2hf9_A Probable hydrogenase ni 87.3 0.27 9.3E-06 43.9 2.6 26 93-118 37-62 (226)
220 1oix_A RAS-related protein RAB 87.3 0.28 9.6E-06 42.9 2.6 25 93-117 28-52 (191)
221 3ihw_A Centg3; RAS, centaurin, 87.1 0.32 1.1E-05 42.3 2.8 26 91-116 17-42 (184)
222 3aez_A Pantothenate kinase; tr 87.0 0.26 9E-06 47.5 2.4 27 92-118 88-114 (312)
223 1uf9_A TT1252 protein; P-loop, 86.9 0.29 9.8E-06 42.9 2.5 23 94-116 8-30 (203)
224 3vaa_A Shikimate kinase, SK; s 86.9 0.26 8.7E-06 43.7 2.1 25 94-118 25-49 (199)
225 1lvg_A Guanylate kinase, GMP k 86.8 0.23 7.9E-06 44.2 1.8 21 96-116 6-26 (198)
226 3lw7_A Adenylate kinase relate 86.6 0.25 8.7E-06 41.7 1.9 20 95-114 2-21 (179)
227 1cke_A CK, MSSA, protein (cyti 86.6 0.25 8.6E-06 44.3 1.9 24 95-118 6-29 (227)
228 3trf_A Shikimate kinase, SK; a 86.5 0.26 9E-06 42.7 2.0 25 94-118 5-29 (185)
229 3tif_A Uncharacterized ABC tra 86.5 0.23 8E-06 45.8 1.7 22 97-118 34-55 (235)
230 2pze_A Cystic fibrosis transme 86.5 0.23 8E-06 45.5 1.7 22 97-118 37-58 (229)
231 3zvr_A Dynamin-1; hydrolase, D 86.5 1.1 3.8E-05 48.6 7.2 24 94-117 51-74 (772)
232 3p32_A Probable GTPase RV1496/ 86.4 0.29 9.8E-06 47.9 2.4 29 90-118 75-103 (355)
233 1kgd_A CASK, peripheral plasma 86.4 0.26 8.8E-06 43.1 1.8 21 96-116 7-27 (180)
234 1zuh_A Shikimate kinase; alpha 86.3 0.27 9.2E-06 42.0 1.9 24 95-118 8-31 (168)
235 1g6h_A High-affinity branched- 86.3 0.24 8.3E-06 46.3 1.7 23 97-119 36-58 (257)
236 2grj_A Dephospho-COA kinase; T 86.2 0.29 9.8E-06 43.8 2.1 24 93-116 11-34 (192)
237 3kb2_A SPBC2 prophage-derived 86.2 0.28 9.7E-06 41.6 2.0 22 96-117 3-24 (173)
238 1odf_A YGR205W, hypothetical 3 85.8 0.37 1.3E-05 46.0 2.8 27 91-117 28-54 (290)
239 2jeo_A Uridine-cytidine kinase 85.7 0.33 1.1E-05 44.6 2.3 24 95-118 26-49 (245)
240 1uj2_A Uridine-cytidine kinase 85.5 0.35 1.2E-05 44.7 2.3 23 94-116 22-44 (252)
241 4gp7_A Metallophosphoesterase; 85.5 0.29 9.9E-06 42.4 1.7 18 97-114 12-29 (171)
242 3t61_A Gluconokinase; PSI-biol 85.5 0.3 1E-05 43.2 1.8 23 95-117 19-41 (202)
243 2cbz_A Multidrug resistance-as 85.5 0.28 9.6E-06 45.3 1.7 22 97-118 34-55 (237)
244 3tqc_A Pantothenate kinase; bi 85.4 0.38 1.3E-05 46.8 2.6 27 92-118 90-116 (321)
245 1ji0_A ABC transporter; ATP bi 85.4 0.29 9.8E-06 45.3 1.7 22 97-118 35-56 (240)
246 4g1u_C Hemin import ATP-bindin 85.4 0.28 9.6E-06 46.2 1.7 22 97-118 40-61 (266)
247 1b0u_A Histidine permease; ABC 85.3 0.29 9.9E-06 45.9 1.7 22 97-118 35-56 (262)
248 1mv5_A LMRA, multidrug resista 85.2 0.29 1E-05 45.3 1.7 23 96-118 30-52 (243)
249 2onk_A Molybdate/tungstate ABC 85.2 0.31 1E-05 45.2 1.8 22 97-118 27-48 (240)
250 2yz2_A Putative ABC transporte 85.2 0.29 1E-05 46.0 1.7 22 97-118 36-57 (266)
251 3b85_A Phosphate starvation-in 85.1 0.38 1.3E-05 43.6 2.3 21 97-117 25-45 (208)
252 1z6g_A Guanylate kinase; struc 85.0 0.32 1.1E-05 44.0 1.8 22 96-117 25-46 (218)
253 2ghi_A Transport protein; mult 85.0 0.3 1E-05 45.7 1.7 22 97-118 49-70 (260)
254 3llu_A RAS-related GTP-binding 85.0 0.36 1.2E-05 42.2 2.1 28 89-116 15-42 (196)
255 2qt1_A Nicotinamide riboside k 85.0 0.49 1.7E-05 41.9 3.0 23 94-116 21-43 (207)
256 3gfo_A Cobalt import ATP-bindi 84.8 0.31 1.1E-05 46.2 1.7 22 97-118 37-58 (275)
257 1y63_A LMAJ004144AAA protein; 84.7 0.42 1.4E-05 41.8 2.4 24 94-117 10-33 (184)
258 3cm0_A Adenylate kinase; ATP-b 84.7 0.42 1.4E-05 41.3 2.4 23 94-116 4-26 (186)
259 1sq5_A Pantothenate kinase; P- 84.7 0.34 1.2E-05 46.4 1.9 26 94-119 80-105 (308)
260 2bdt_A BH3686; alpha-beta prot 84.7 0.37 1.3E-05 42.0 2.0 21 96-116 4-24 (189)
261 3iby_A Ferrous iron transport 84.6 0.37 1.3E-05 44.9 2.1 21 96-116 3-23 (256)
262 2ff7_A Alpha-hemolysin translo 84.6 0.33 1.1E-05 45.2 1.7 22 97-118 38-59 (247)
263 1aky_A Adenylate kinase; ATP:A 84.5 0.38 1.3E-05 43.2 2.1 26 93-118 3-28 (220)
264 2i3b_A HCR-ntpase, human cance 84.4 0.35 1.2E-05 43.1 1.8 21 97-117 4-24 (189)
265 2qi9_C Vitamin B12 import ATP- 84.4 0.34 1.2E-05 45.2 1.7 22 97-118 29-50 (249)
266 2rhm_A Putative kinase; P-loop 84.3 0.46 1.6E-05 41.2 2.5 24 94-117 5-28 (193)
267 1sgw_A Putative ABC transporte 84.1 0.36 1.2E-05 44.0 1.7 22 97-118 38-59 (214)
268 3q3j_B RHO-related GTP-binding 84.1 0.42 1.4E-05 42.6 2.2 25 92-116 25-49 (214)
269 2c95_A Adenylate kinase 1; tra 83.7 0.48 1.6E-05 41.2 2.3 25 94-118 9-33 (196)
270 2d2e_A SUFC protein; ABC-ATPas 83.7 0.39 1.3E-05 44.6 1.8 21 97-117 32-52 (250)
271 2olj_A Amino acid ABC transpor 83.6 0.38 1.3E-05 45.3 1.7 22 97-118 53-74 (263)
272 1vpl_A ABC transporter, ATP-bi 83.6 0.38 1.3E-05 45.1 1.7 22 97-118 44-65 (256)
273 2qag_B Septin-6, protein NEDD5 83.6 0.49 1.7E-05 47.8 2.6 24 94-117 42-65 (427)
274 2pt5_A Shikimate kinase, SK; a 83.6 0.42 1.4E-05 40.6 1.8 23 95-117 1-23 (168)
275 1via_A Shikimate kinase; struc 83.6 0.41 1.4E-05 41.2 1.8 23 96-118 6-28 (175)
276 3fb4_A Adenylate kinase; psych 83.6 0.41 1.4E-05 42.6 1.8 23 95-117 1-23 (216)
277 3tau_A Guanylate kinase, GMP k 83.5 0.42 1.4E-05 42.7 1.9 23 94-116 8-30 (208)
278 2v9p_A Replication protein E1; 83.5 0.4 1.4E-05 46.3 1.8 26 96-122 128-153 (305)
279 1ly1_A Polynucleotide kinase; 83.5 0.45 1.5E-05 40.7 2.0 22 95-116 3-24 (181)
280 2qu8_A Putative nucleolar GTP- 83.4 0.57 1.9E-05 42.1 2.7 23 94-116 29-51 (228)
281 2pez_A Bifunctional 3'-phospho 83.3 0.5 1.7E-05 40.8 2.2 24 94-117 5-28 (179)
282 3b1v_A Ferrous iron uptake tra 83.3 0.44 1.5E-05 44.9 2.0 23 94-116 3-25 (272)
283 1f60_A Elongation factor EEF1A 83.2 1.3 4.4E-05 44.9 5.6 42 6-47 155-198 (458)
284 2www_A Methylmalonic aciduria 83.1 0.56 1.9E-05 45.8 2.8 26 93-118 73-98 (349)
285 1s96_A Guanylate kinase, GMP k 83.1 0.44 1.5E-05 43.4 1.9 22 96-117 18-39 (219)
286 3dl0_A Adenylate kinase; phosp 83.1 0.44 1.5E-05 42.5 1.8 23 95-117 1-23 (216)
287 2p5t_B PEZT; postsegregational 83.0 0.66 2.3E-05 42.8 3.1 25 94-118 32-56 (253)
288 2ixe_A Antigen peptide transpo 83.0 0.42 1.4E-05 45.1 1.7 22 97-118 48-69 (271)
289 2nq2_C Hypothetical ABC transp 82.9 0.43 1.5E-05 44.6 1.7 22 97-118 34-55 (253)
290 2ihy_A ABC transporter, ATP-bi 82.8 0.42 1.4E-05 45.3 1.7 22 97-118 50-71 (279)
291 2bbw_A Adenylate kinase 4, AK4 82.8 0.46 1.6E-05 43.5 1.9 21 95-115 28-48 (246)
292 1ukz_A Uridylate kinase; trans 82.8 0.67 2.3E-05 40.8 2.9 24 94-117 15-38 (203)
293 3lnc_A Guanylate kinase, GMP k 82.7 0.45 1.6E-05 43.0 1.8 20 96-115 29-48 (231)
294 2wwf_A Thymidilate kinase, put 82.7 0.6 2E-05 41.2 2.5 23 94-116 10-32 (212)
295 2bbs_A Cystic fibrosis transme 82.6 0.46 1.6E-05 45.4 1.8 22 97-118 67-88 (290)
296 2f1r_A Molybdopterin-guanine d 82.5 0.28 9.6E-06 43.1 0.3 22 96-117 4-25 (171)
297 2aka_B Dynamin-1; fusion prote 82.5 0.55 1.9E-05 43.9 2.4 24 94-117 26-49 (299)
298 1rz3_A Hypothetical protein rb 82.4 0.6 2E-05 41.4 2.4 25 94-118 22-46 (201)
299 1xjc_A MOBB protein homolog; s 82.4 0.48 1.6E-05 41.7 1.8 21 96-116 6-26 (169)
300 1ni3_A YCHF GTPase, YCHF GTP-b 82.4 0.63 2.2E-05 46.5 2.8 26 91-116 17-42 (392)
301 3cbq_A GTP-binding protein REM 82.3 0.53 1.8E-05 41.3 2.0 24 92-115 21-44 (195)
302 3kta_A Chromosome segregation 82.2 0.55 1.9E-05 40.6 2.0 24 95-119 28-51 (182)
303 2pbr_A DTMP kinase, thymidylat 82.0 0.53 1.8E-05 40.7 1.9 21 96-116 2-22 (195)
304 1nks_A Adenylate kinase; therm 82.0 0.6 2.1E-05 40.2 2.3 23 96-118 3-25 (194)
305 2pt7_A CAG-ALFA; ATPase, prote 82.0 0.55 1.9E-05 45.6 2.2 23 95-117 172-194 (330)
306 1qhx_A CPT, protein (chloramph 82.0 0.56 1.9E-05 40.2 2.0 24 95-118 4-27 (178)
307 2vli_A Antibiotic resistance p 82.0 0.55 1.9E-05 40.4 2.0 23 95-117 6-28 (183)
308 4e22_A Cytidylate kinase; P-lo 81.9 0.57 2E-05 43.3 2.2 22 94-115 27-48 (252)
309 3uie_A Adenylyl-sulfate kinase 81.8 0.62 2.1E-05 41.2 2.3 25 94-118 25-49 (200)
310 1nn5_A Similar to deoxythymidy 81.8 0.62 2.1E-05 41.1 2.3 23 94-116 9-31 (215)
311 1kht_A Adenylate kinase; phosp 81.7 0.57 1.9E-05 40.4 2.0 24 95-118 4-27 (192)
312 1vht_A Dephospho-COA kinase; s 81.6 0.64 2.2E-05 41.5 2.3 23 94-116 4-26 (218)
313 2qtf_A Protein HFLX, GTP-bindi 81.5 0.51 1.7E-05 46.5 1.7 21 96-116 181-201 (364)
314 2oap_1 GSPE-2, type II secreti 81.4 0.57 2E-05 48.4 2.2 25 94-118 260-284 (511)
315 1tev_A UMP-CMP kinase; ploop, 81.2 0.61 2.1E-05 40.3 2.0 22 95-116 4-25 (196)
316 2v54_A DTMP kinase, thymidylat 81.2 0.69 2.3E-05 40.5 2.4 25 94-118 4-28 (204)
317 3ec2_A DNA replication protein 81.1 0.55 1.9E-05 40.6 1.7 26 94-119 38-63 (180)
318 1mky_A Probable GTP-binding pr 81.1 0.71 2.4E-05 46.4 2.7 25 92-116 178-202 (439)
319 2cdn_A Adenylate kinase; phosp 81.0 0.75 2.5E-05 40.5 2.5 24 94-117 20-43 (201)
320 4a74_A DNA repair and recombin 80.8 0.62 2.1E-05 41.5 1.9 21 96-116 27-47 (231)
321 2zu0_C Probable ATP-dependent 80.7 0.59 2E-05 43.9 1.8 21 97-117 49-69 (267)
322 1e4v_A Adenylate kinase; trans 80.7 0.66 2.3E-05 41.4 2.1 23 95-117 1-23 (214)
323 2plr_A DTMP kinase, probable t 80.6 0.7 2.4E-05 40.5 2.2 22 95-116 5-26 (213)
324 1tq4_A IIGP1, interferon-induc 80.5 0.71 2.4E-05 46.4 2.4 25 94-118 69-93 (413)
325 2qnr_A Septin-2, protein NEDD5 80.4 0.66 2.3E-05 44.3 2.1 23 94-116 18-40 (301)
326 1e6c_A Shikimate kinase; phosp 80.2 0.63 2.2E-05 39.6 1.7 22 96-117 4-25 (173)
327 1np6_A Molybdopterin-guanine d 80.1 0.65 2.2E-05 40.8 1.8 22 96-117 8-29 (174)
328 2kjq_A DNAA-related protein; s 79.9 0.81 2.8E-05 38.9 2.3 23 94-116 36-58 (149)
329 2qor_A Guanylate kinase; phosp 79.9 0.76 2.6E-05 40.7 2.2 23 94-116 12-34 (204)
330 2iyv_A Shikimate kinase, SK; t 79.7 0.65 2.2E-05 40.1 1.7 22 96-117 4-25 (184)
331 1qf9_A UMP/CMP kinase, protein 79.6 0.94 3.2E-05 39.0 2.7 22 95-116 7-28 (194)
332 3tui_C Methionine import ATP-b 79.5 0.66 2.3E-05 45.9 1.8 22 97-118 57-78 (366)
333 2pjz_A Hypothetical protein ST 79.4 0.66 2.3E-05 43.6 1.7 22 97-118 33-54 (263)
334 3geh_A MNME, tRNA modification 79.3 0.77 2.6E-05 46.8 2.3 24 93-116 223-246 (462)
335 1gtv_A TMK, thymidylate kinase 79.2 0.49 1.7E-05 41.8 0.7 21 96-116 2-22 (214)
336 1zd8_A GTP:AMP phosphotransfer 79.2 0.81 2.8E-05 41.2 2.2 25 94-118 7-31 (227)
337 2j69_A Bacterial dynamin-like 79.2 0.77 2.6E-05 49.2 2.3 25 92-116 67-91 (695)
338 2bwj_A Adenylate kinase 5; pho 79.1 0.81 2.8E-05 39.8 2.1 24 94-117 12-35 (199)
339 2zej_A Dardarin, leucine-rich 78.8 0.74 2.5E-05 39.7 1.7 23 94-116 2-24 (184)
340 2gza_A Type IV secretion syste 78.8 0.78 2.7E-05 45.0 2.1 23 94-116 175-197 (361)
341 3iij_A Coilin-interacting nucl 78.8 0.95 3.2E-05 39.0 2.4 23 94-116 11-33 (180)
342 2qpt_A EH domain-containing pr 78.7 0.96 3.3E-05 47.1 2.8 24 94-117 65-88 (550)
343 1ak2_A Adenylate kinase isoenz 78.7 0.87 3E-05 41.3 2.2 25 94-118 16-40 (233)
344 1wxq_A GTP-binding protein; st 78.7 0.77 2.6E-05 45.8 2.0 22 95-116 1-22 (397)
345 3nwj_A ATSK2; P loop, shikimat 78.6 0.75 2.6E-05 42.9 1.8 24 95-118 49-72 (250)
346 1r5b_A Eukaryotic peptide chai 78.6 0.88 3E-05 46.3 2.5 40 7-46 192-237 (467)
347 2vp4_A Deoxynucleoside kinase; 78.5 0.83 2.8E-05 41.5 2.0 23 94-116 20-42 (230)
348 3ec1_A YQEH GTPase; atnos1, at 78.5 0.82 2.8E-05 45.0 2.1 22 95-116 163-184 (369)
349 2qag_C Septin-7; cell cycle, c 78.4 0.8 2.7E-05 46.1 2.0 25 94-118 31-55 (418)
350 2eyu_A Twitching motility prot 78.2 0.93 3.2E-05 42.4 2.3 24 93-116 24-47 (261)
351 1jny_A EF-1-alpha, elongation 78.2 2.9 9.8E-05 41.9 6.1 40 7-46 155-198 (435)
352 3tlx_A Adenylate kinase 2; str 78.1 0.91 3.1E-05 41.7 2.2 25 92-116 27-51 (243)
353 2e87_A Hypothetical protein PH 78.1 0.99 3.4E-05 44.0 2.6 25 92-116 165-189 (357)
354 1m7g_A Adenylylsulfate kinase; 78.1 0.74 2.5E-05 41.0 1.5 25 94-118 25-49 (211)
355 2wkq_A NPH1-1, RAS-related C3 77.8 1 3.5E-05 42.4 2.5 24 92-115 153-176 (332)
356 1lw7_A Transcriptional regulat 77.7 0.67 2.3E-05 45.3 1.2 23 96-118 172-194 (365)
357 1q3t_A Cytidylate kinase; nucl 77.6 0.99 3.4E-05 41.0 2.3 25 94-118 16-40 (236)
358 3b9q_A Chloroplast SRP recepto 77.5 0.83 2.9E-05 43.8 1.8 24 95-118 101-124 (302)
359 3mca_A HBS1, elongation factor 77.4 0.85 2.9E-05 47.9 2.0 40 7-46 326-368 (592)
360 2p67_A LAO/AO transport system 77.4 1 3.6E-05 43.6 2.5 27 92-118 54-80 (341)
361 1rj9_A FTSY, signal recognitio 77.3 1.1 3.8E-05 43.0 2.6 24 94-117 102-125 (304)
362 2ehv_A Hypothetical protein PH 77.1 0.85 2.9E-05 41.1 1.6 20 96-115 32-51 (251)
363 2xb4_A Adenylate kinase; ATP-b 77.0 0.97 3.3E-05 40.8 2.0 23 95-117 1-23 (223)
364 1zak_A Adenylate kinase; ATP:A 76.6 0.97 3.3E-05 40.5 1.9 24 95-118 6-29 (222)
365 2rcn_A Probable GTPase ENGC; Y 76.5 0.88 3E-05 44.9 1.7 22 96-117 217-238 (358)
366 3ake_A Cytidylate kinase; CMP 76.4 1 3.5E-05 39.4 1.9 23 96-118 4-26 (208)
367 1a7j_A Phosphoribulokinase; tr 76.1 1.1 3.8E-05 42.5 2.2 25 94-118 5-29 (290)
368 2qm8_A GTPase/ATPase; G protei 76.0 1.2 4.2E-05 43.2 2.5 26 93-118 54-79 (337)
369 1udx_A The GTP-binding protein 75.6 0.89 3E-05 45.7 1.5 22 96-117 159-180 (416)
370 1f2t_A RAD50 ABC-ATPase; DNA d 75.6 1 3.4E-05 38.3 1.6 24 94-118 24-47 (149)
371 3nh6_A ATP-binding cassette SU 75.5 0.64 2.2E-05 44.8 0.4 21 97-117 83-103 (306)
372 3be4_A Adenylate kinase; malar 75.4 1.2 4E-05 40.0 2.1 24 95-118 6-29 (217)
373 2z0h_A DTMP kinase, thymidylat 75.4 1 3.5E-05 39.0 1.7 21 96-116 2-22 (197)
374 2j37_W Signal recognition part 75.3 1.2 4E-05 46.0 2.3 27 92-118 99-125 (504)
375 1jal_A YCHF protein; nucleotid 75.3 1.1 3.7E-05 44.3 2.0 22 95-116 3-24 (363)
376 2f6r_A COA synthase, bifunctio 75.0 1.4 4.8E-05 41.5 2.6 22 94-115 75-96 (281)
377 2ewv_A Twitching motility prot 74.7 1.3 4.4E-05 43.7 2.3 24 93-116 135-158 (372)
378 2yyz_A Sugar ABC transporter, 74.6 1.1 3.8E-05 44.2 1.8 22 97-118 32-53 (359)
379 1nij_A Hypothetical protein YJ 74.3 1.4 4.8E-05 42.3 2.4 22 96-117 6-27 (318)
380 2cjw_A GTP-binding protein GEM 74.2 1.5 5.3E-05 38.1 2.5 25 92-116 4-28 (192)
381 1gvn_B Zeta; postsegregational 74.2 1.8 6.1E-05 40.9 3.1 24 94-117 33-56 (287)
382 1g29_1 MALK, maltose transport 74.0 1.2 4E-05 44.2 1.8 22 97-118 32-53 (372)
383 3jvv_A Twitching mobility prot 74.0 1.4 4.8E-05 43.3 2.4 24 94-117 123-146 (356)
384 3euj_A Chromosome partition pr 74.0 1.1 3.9E-05 45.9 1.8 24 96-119 31-54 (483)
385 1z47_A CYSA, putative ABC-tran 73.8 1.2 4.1E-05 43.9 1.8 22 97-118 44-65 (355)
386 3j2k_7 ERF3, eukaryotic polype 73.7 2.3 7.9E-05 42.8 4.0 40 7-46 166-210 (439)
387 3fvq_A Fe(3+) IONS import ATP- 73.7 1.3 4.3E-05 43.8 1.9 22 97-118 33-54 (359)
388 2it1_A 362AA long hypothetical 73.6 1.2 4.1E-05 43.9 1.8 22 97-118 32-53 (362)
389 3c5h_A Glucocorticoid receptor 73.6 1.8 6E-05 39.9 2.9 26 91-116 16-50 (255)
390 2npi_A Protein CLP1; CLP1-PCF1 73.6 1.3 4.4E-05 45.1 2.0 22 97-118 141-162 (460)
391 1v43_A Sugar-binding transport 73.4 1.2 4.2E-05 44.0 1.8 22 97-118 40-61 (372)
392 2dby_A GTP-binding protein; GD 73.2 1.2 4.2E-05 43.9 1.7 22 95-116 2-23 (368)
393 1puj_A YLQF, conserved hypothe 73.2 1.7 5.9E-05 41.1 2.7 25 92-116 118-142 (282)
394 3rlf_A Maltose/maltodextrin im 72.9 1.3 4.4E-05 44.1 1.8 22 97-118 32-53 (381)
395 2og2_A Putative signal recogni 72.8 1.3 4.4E-05 43.6 1.8 24 95-118 158-181 (359)
396 3t34_A Dynamin-related protein 72.7 1.3 4.5E-05 43.0 1.8 22 96-117 36-57 (360)
397 2yv5_A YJEQ protein; hydrolase 72.4 1.3 4.4E-05 42.3 1.7 20 96-115 167-186 (302)
398 1yqt_A RNAse L inhibitor; ATP- 72.4 1.3 4.4E-05 45.9 1.8 24 96-119 49-72 (538)
399 1p9r_A General secretion pathw 72.3 1.6 5.4E-05 43.9 2.4 27 92-118 165-191 (418)
400 3foz_A TRNA delta(2)-isopenten 72.2 3.1 0.0001 40.3 4.3 23 95-117 11-33 (316)
401 3ozx_A RNAse L inhibitor; ATP 71.7 1.3 4.6E-05 45.9 1.7 24 96-119 27-50 (538)
402 3izq_1 HBS1P, elongation facto 71.7 3.7 0.00013 43.2 5.1 100 7-107 316-429 (611)
403 3a4m_A L-seryl-tRNA(SEC) kinas 71.4 1.7 5.7E-05 40.3 2.1 23 95-117 5-27 (260)
404 3r20_A Cytidylate kinase; stru 71.3 1.6 5.5E-05 40.3 2.0 24 94-117 9-32 (233)
405 2w0m_A SSO2452; RECA, SSPF, un 71.3 1.6 5.5E-05 38.6 1.9 22 96-117 25-46 (235)
406 2ohf_A Protein OLA1, GTP-bindi 71.2 1.8 6E-05 43.3 2.4 27 90-116 18-44 (396)
407 3e70_C DPA, signal recognition 71.0 1.9 6.6E-05 41.7 2.6 24 94-117 129-152 (328)
408 1yqt_A RNAse L inhibitor; ATP- 70.9 1.5 5.1E-05 45.5 1.8 23 97-119 315-337 (538)
409 3d31_A Sulfate/molybdate ABC t 70.9 1 3.5E-05 44.2 0.5 22 97-118 29-50 (348)
410 1t9h_A YLOQ, probable GTPase E 70.8 0.79 2.7E-05 44.2 -0.3 21 96-116 175-195 (307)
411 1zun_B Sulfate adenylate trans 70.8 4.9 0.00017 40.2 5.6 40 7-46 168-209 (434)
412 2px0_A Flagellar biosynthesis 70.6 1.9 6.6E-05 41.0 2.4 25 94-118 105-129 (296)
413 2yhs_A FTSY, cell division pro 70.5 1.5 5.2E-05 45.1 1.8 24 95-118 294-317 (503)
414 3ney_A 55 kDa erythrocyte memb 70.4 1.7 5.7E-05 39.1 1.8 21 96-116 21-41 (197)
415 3b60_A Lipid A export ATP-bind 70.1 1.6 5.5E-05 45.5 1.9 22 96-117 371-392 (582)
416 2ze6_A Isopentenyl transferase 70.1 1.7 5.9E-05 40.1 1.9 21 96-116 3-23 (253)
417 1u0l_A Probable GTPase ENGC; p 70.0 1.6 5.4E-05 41.6 1.7 22 96-117 171-192 (301)
418 2h92_A Cytidylate kinase; ross 70.0 1.8 6E-05 38.5 1.9 24 95-118 4-27 (219)
419 3qf7_A RAD50; ABC-ATPase, ATPa 69.9 1.5 5.3E-05 42.9 1.6 25 94-119 24-48 (365)
420 2yl4_A ATP-binding cassette SU 69.8 1.8 6.1E-05 45.3 2.2 22 96-117 372-393 (595)
421 3qf4_B Uncharacterized ABC tra 69.6 1.8 6.2E-05 45.3 2.2 22 96-117 383-404 (598)
422 2v3c_C SRP54, signal recogniti 69.5 2.2 7.6E-05 43.0 2.7 27 92-118 97-123 (432)
423 1oxx_K GLCV, glucose, ABC tran 69.3 1 3.5E-05 44.2 0.2 22 97-118 34-55 (353)
424 3ozx_A RNAse L inhibitor; ATP 69.3 1.6 5.6E-05 45.3 1.7 22 97-118 297-318 (538)
425 3b5x_A Lipid A export ATP-bind 68.6 1.7 5.9E-05 45.3 1.7 21 97-117 372-392 (582)
426 1p5z_B DCK, deoxycytidine kina 68.5 1.9 6.4E-05 39.8 1.8 23 94-116 24-46 (263)
427 1cr0_A DNA primase/helicase; R 68.3 1.9 6.6E-05 40.3 1.9 22 97-118 38-59 (296)
428 3bk7_A ABC transporter ATP-bin 68.3 1.7 6E-05 45.7 1.7 24 96-119 119-142 (607)
429 3szr_A Interferon-induced GTP- 68.2 1.5 5.2E-05 46.1 1.2 22 97-118 48-69 (608)
430 2ga8_A Hypothetical 39.9 kDa p 67.8 2.5 8.7E-05 41.6 2.6 26 93-118 23-48 (359)
431 2obl_A ESCN; ATPase, hydrolase 67.8 2 7E-05 41.9 2.0 21 97-117 74-94 (347)
432 3j16_B RLI1P; ribosome recycli 67.8 1.9 6.4E-05 45.5 1.8 24 96-119 105-128 (608)
433 3bk7_A ABC transporter ATP-bin 67.7 1.9 6.4E-05 45.5 1.8 23 97-119 385-407 (607)
434 3gd7_A Fusion complex of cysti 67.7 2 6.9E-05 42.7 1.9 22 97-118 50-71 (390)
435 1zcb_A G alpha I/13; GTP-bindi 67.3 2.9 9.8E-05 41.1 2.9 28 92-120 31-58 (362)
436 1ltq_A Polynucleotide kinase; 67.2 2.2 7.4E-05 39.9 2.0 22 95-116 3-24 (301)
437 4a82_A Cystic fibrosis transme 66.9 1.6 5.4E-05 45.6 1.0 21 97-117 370-390 (578)
438 3eph_A TRNA isopentenyltransfe 66.9 5.2 0.00018 40.0 4.7 22 95-116 3-24 (409)
439 2x2e_A Dynamin-1; nitration, h 66.8 1.9 6.5E-05 41.8 1.5 24 94-117 31-54 (353)
440 1qhl_A Protein (cell division 66.8 0.57 1.9E-05 43.1 -2.2 23 98-120 31-53 (227)
441 3j16_B RLI1P; ribosome recycli 66.7 2 6.8E-05 45.3 1.8 23 97-119 381-403 (608)
442 3p26_A Elongation factor 1 alp 66.5 1.6 5.5E-05 44.4 1.0 100 7-107 182-295 (483)
443 3cr8_A Sulfate adenylyltranfer 66.5 1.5 5.2E-05 45.7 0.8 26 94-119 369-394 (552)
444 1lnz_A SPO0B-associated GTP-bi 66.3 1.5 5.2E-05 42.8 0.7 21 95-115 159-179 (342)
445 3gmt_A Adenylate kinase; ssgci 65.9 2.5 8.4E-05 39.0 2.0 25 93-117 7-31 (230)
446 1in4_A RUVB, holliday junction 65.8 2.2 7.4E-05 41.1 1.7 26 93-118 50-75 (334)
447 3r7w_A Gtpase1, GTP-binding pr 65.7 2.8 9.6E-05 39.8 2.4 22 94-115 3-24 (307)
448 3sr0_A Adenylate kinase; phosp 65.4 2.5 8.7E-05 38.0 2.0 23 95-117 1-23 (206)
449 3cnl_A YLQF, putative uncharac 65.2 2.7 9.1E-05 39.3 2.1 22 95-116 100-121 (262)
450 3qks_A DNA double-strand break 64.9 2.3 7.9E-05 37.9 1.6 25 94-119 24-48 (203)
451 1svm_A Large T antigen; AAA+ f 64.9 2.8 9.4E-05 41.5 2.3 23 94-116 169-191 (377)
452 1xzp_A Probable tRNA modificat 64.8 1.7 5.7E-05 44.6 0.7 23 94-116 243-265 (482)
453 3qf4_A ABC transporter, ATP-bi 64.6 2 6.7E-05 45.0 1.2 21 97-117 372-392 (587)
454 3umf_A Adenylate kinase; rossm 64.0 3.2 0.00011 37.7 2.4 22 96-117 31-52 (217)
455 4eaq_A DTMP kinase, thymidylat 63.7 3.8 0.00013 37.2 2.9 24 94-117 26-49 (229)
456 2cvh_A DNA repair and recombin 63.7 2.7 9.3E-05 36.9 1.8 21 96-116 22-42 (220)
457 2g3y_A GTP-binding protein GEM 63.6 3.3 0.00011 37.1 2.4 23 93-115 36-58 (211)
458 1vma_A Cell division protein F 63.5 3.4 0.00012 39.6 2.6 25 94-118 104-128 (306)
459 4aby_A DNA repair protein RECN 63.2 1.5 5.3E-05 43.1 0.1 22 97-118 63-84 (415)
460 2ocp_A DGK, deoxyguanosine kin 63.1 3.3 0.00011 37.5 2.3 22 95-116 3-24 (241)
461 3tqf_A HPR(Ser) kinase; transf 62.9 2.9 0.0001 37.1 1.8 19 96-114 18-36 (181)
462 4i1u_A Dephospho-COA kinase; s 62.7 2.8 9.5E-05 38.1 1.7 20 96-115 11-30 (210)
463 2xxa_A Signal recognition part 62.3 3.4 0.00012 41.7 2.4 27 92-118 98-124 (433)
464 3qkt_A DNA double-strand break 62.3 2.7 9.2E-05 40.6 1.6 26 93-119 23-48 (339)
465 2dpy_A FLII, flagellum-specifi 62.0 3 0.0001 42.0 2.0 21 97-117 160-180 (438)
466 1ixz_A ATP-dependent metallopr 61.9 3.2 0.00011 37.7 2.0 23 96-118 51-73 (254)
467 2x8a_A Nuclear valosin-contain 61.8 3.1 0.0001 39.0 1.9 22 97-118 47-68 (274)
468 1yrb_A ATP(GTP)binding protein 61.5 3.7 0.00013 37.2 2.4 23 94-116 14-36 (262)
469 1nlf_A Regulatory protein REPA 61.4 3.2 0.00011 38.6 1.9 22 96-117 32-53 (279)
470 1jbk_A CLPB protein; beta barr 61.0 4.1 0.00014 34.2 2.4 23 94-116 43-65 (195)
471 3kl4_A SRP54, signal recogniti 60.8 3.8 0.00013 41.4 2.4 27 93-119 96-122 (433)
472 1iy2_A ATP-dependent metallopr 60.6 3.5 0.00012 38.2 2.0 24 96-119 75-98 (278)
473 1bif_A 6-phosphofructo-2-kinas 60.0 3.7 0.00013 41.5 2.2 24 94-117 39-62 (469)
474 1n0w_A DNA repair protein RAD5 60.0 3.4 0.00012 36.8 1.8 21 96-116 26-46 (243)
475 4fcw_A Chaperone protein CLPB; 60.0 4.4 0.00015 37.8 2.6 29 90-118 43-71 (311)
476 3sjy_A Translation initiation 58.8 6.3 0.00021 38.9 3.6 37 7-45 140-176 (403)
477 2xtz_A Guanine nucleotide-bind 58.4 5.5 0.00019 39.0 3.1 28 92-120 7-34 (354)
478 1lv7_A FTSH; alpha/beta domain 58.2 4.5 0.00015 36.8 2.3 23 94-116 45-67 (257)
479 1ex7_A Guanylate kinase; subst 58.1 3.7 0.00013 36.4 1.6 19 97-115 4-22 (186)
480 3ohm_A Guanine nucleotide-bind 58.0 5.6 0.00019 38.5 3.0 29 91-120 4-32 (327)
481 1e69_A Chromosome segregation 57.4 4.4 0.00015 38.7 2.2 24 94-118 25-48 (322)
482 4f4c_A Multidrug resistance pr 56.5 3.9 0.00013 47.0 1.9 21 96-116 446-466 (1321)
483 2p65_A Hypothetical protein PF 56.4 5 0.00017 33.7 2.2 23 94-116 43-65 (187)
484 2w58_A DNAI, primosome compone 56.4 4.5 0.00016 35.2 1.9 24 95-118 55-78 (202)
485 3d3q_A TRNA delta(2)-isopenten 56.0 4.6 0.00016 39.4 2.0 23 95-117 8-30 (340)
486 1mky_A Probable GTP-binding pr 55.8 4.3 0.00015 40.6 1.9 20 96-115 3-22 (439)
487 2iw3_A Elongation factor 3A; a 55.8 2.5 8.5E-05 47.1 0.1 23 97-119 702-724 (986)
488 1cip_A Protein (guanine nucleo 55.5 6.8 0.00023 38.3 3.2 29 91-120 29-57 (353)
489 3h2y_A GTPase family protein; 54.9 4.7 0.00016 39.5 2.0 22 95-116 161-182 (368)
490 3zvl_A Bifunctional polynucleo 54.7 6.7 0.00023 39.0 3.1 22 95-116 259-280 (416)
491 1w1w_A Structural maintenance 53.8 4.9 0.00017 40.0 1.9 24 94-118 27-50 (430)
492 3dm5_A SRP54, signal recogniti 53.6 6.4 0.00022 39.8 2.7 27 93-119 99-125 (443)
493 3g5u_A MCG1178, multidrug resi 53.6 4.2 0.00014 46.6 1.5 21 97-117 419-439 (1284)
494 4f4c_A Multidrug resistance pr 53.5 5.2 0.00018 46.0 2.3 20 97-116 1108-1127(1321)
495 1f5n_A Interferon-induced guan 53.2 6.2 0.00021 41.4 2.6 26 91-116 35-60 (592)
496 1tf7_A KAIC; homohexamer, hexa 52.8 5.1 0.00018 41.1 1.9 23 96-118 41-65 (525)
497 2iw3_A Elongation factor 3A; a 52.7 4.9 0.00017 44.7 1.8 20 97-116 464-483 (986)
498 2elf_A Protein translation elo 52.5 8.2 0.00028 37.8 3.2 38 5-45 122-161 (370)
499 1g8f_A Sulfate adenylyltransfe 52.2 4.8 0.00016 41.5 1.5 29 91-119 392-420 (511)
500 1j8m_F SRP54, signal recogniti 52.1 6.2 0.00021 37.5 2.2 25 94-118 98-122 (297)
No 1
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} SCOP: c.56.2.1 PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ...
Probab=100.00 E-value=4.9e-65 Score=494.18 Aligned_cols=279 Identities=53% Similarity=0.965 Sum_probs=259.1
Q ss_pred hhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecce
Q psy9643 126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGR 205 (412)
Q Consensus 126 ~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr 205 (412)
+.+++++++++||+++++.+|++|||+||||+++++.+++...++|+++|+||.++++||++++++|+++|++|+++|||
T Consensus 5 ~~~~~~~~~~~~i~~~~~~~p~igiI~GSGl~~l~~~~~~~~~~~y~~ipgfp~stv~gh~g~l~~G~l~G~~Vv~~~Gr 84 (284)
T 3fuc_A 5 YTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGR 84 (284)
T ss_dssp CCHHHHHHHHHHHHHHCCCCCSEEEEECTTCGGGGGGCEEEEEEEGGGSTTCC--------CEEEEEEETTEEEEEEESC
T ss_pred hHHHHHHHHHHHHHHhcCCCCcEEEEecCchhHhhhhccCcEEEeccCCCCCCCCCccCCcccEEEEEECCEEEEEEeCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcc
Q psy9643 206 FHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNK 285 (412)
Q Consensus 206 ~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~ 285 (412)
.|.||||+|++++|++++++.+||+.||++|++|++++++++||+|+++||||++++++.+|+.|.+...+|++|+++++
T Consensus 85 ~H~yeg~~~~~v~~~~~~l~~lGv~~iI~tgaaGgl~~~~~~GDlVi~~d~i~~t~~~~~~~~~g~~~~~~g~~~~~~~~ 164 (284)
T 3fuc_A 85 FHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSD 164 (284)
T ss_dssp CCGGGTCCHHHHTHHHHHHHHHTCCEEEEEEEEEECSTTCCTTCEEEEEEEEEHHHHTTCCTTCSSCCTTTCCSSCCCTT
T ss_pred ccccCCCChHHHHHHHHHHHHcCCCEEEEecceecCCCCCCCCCEEEehHHhcccCCcCCCCCcCccccccCCCcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999987667999999888888999999999
Q ss_pred cccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeecc
Q psy9643 286 AYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365 (412)
Q Consensus 286 ~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~ 365 (412)
+||++||+.+.++|+++|++..+++|+|++++||+|+|+||++++|+||+|+||||++||+++|+++|+||++|++|||+
T Consensus 165 ~~d~~L~~~~~~~a~~~gi~~~~~~Gvy~~~~Gp~feT~AE~~~~r~~Gad~VgMe~~pea~lAr~~gi~~~~I~~VTd~ 244 (284)
T 3fuc_A 165 AYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNK 244 (284)
T ss_dssp CSCHHHHHHHHHHHHHHTCSSCCEEEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEeeEEEEecCCEEcCHHHHHHHHHcCCcEEecCHHHHHHHHHHcCCCEEEEEEEecc
Confidence 99999999999999999987238999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9643 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIG 404 (412)
Q Consensus 366 a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~ 404 (412)
++|.++++++++|+||++.+++++.++.+||.++|++|+
T Consensus 245 a~~~~~~~~~~s~eev~~~~~~~~~~~~~l~~~~i~~l~ 283 (284)
T 3fuc_A 245 VIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIP 283 (284)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 987545788999999999999999999999999999875
No 2
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} SCOP: c.56.2.0
Probab=100.00 E-value=4.6e-65 Score=494.87 Aligned_cols=280 Identities=46% Similarity=0.818 Sum_probs=250.2
Q ss_pred hHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEeccee
Q psy9643 127 TYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRF 206 (412)
Q Consensus 127 ~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~ 206 (412)
.+++++++++||+++++.+|++|||+||||+++++.+++..+++|+++|+||.++++||++++++|+++|++|++++||.
T Consensus 3 ~~~~~~~~~~~i~~~~~~~p~igiI~GSGl~~l~~~~~~~~~~~y~~ip~f~~~t~~Gh~g~l~~G~l~G~~Vv~~~Grg 82 (285)
T 3khs_A 3 DYDLAKETAAWLNKQLQIRPVLGIVCGSGLGKIGDSLETSITVAYSDIPNFPVGSVKGHAGSLIFGSVNGVSCVCMKGRF 82 (285)
T ss_dssp HHHHHHHHHHHHHTTCSSCCCEEEEECTTCGGGGGGCEEEEEEEGGGSTTCC-------CCEEEEEEETTEEEEEEESCC
T ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEecCchhhhhhhhcCcEEEeccccCCCCCCCCCCCCCceEEEEECCEEEEEEeCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy9643 207 HYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA 286 (412)
Q Consensus 207 H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~ 286 (412)
|.||||+|+.++|++|+++.+||+.||++|++|++++++++||+|+++||||++++++.|||.|.+...+|++|++++++
T Consensus 83 H~yeg~~~~~v~~~i~~l~~lGv~~iI~tgaaGgl~~~~~~GDlVi~~d~id~t~~~~~~pl~g~~~~~~g~~~~~~~~~ 162 (285)
T 3khs_A 83 HLYEGHTAARATFPMRVFKALGVKIVVLTNAAGGLNPSYRPGDFMVVRDHINLPGLAGANPLTGPNDDTEGERFPSMTSV 162 (285)
T ss_dssp CGGGTCCHHHHTHHHHHHHHTTCCEEEEEEEEEECSTTCCTTCEEEEEEEEEHHHHTTCCTTCSCCCTTTSCSSCCCTTC
T ss_pred cccCCCChHHhHHHHHHHHHcCCCEEEEecceecCCCCCCCCCEEeehheEecccccCCCCCcCccccccCCCCCCcCcc
Confidence 99999999999999999999999999999999999999999999999999999887789999998888899999999999
Q ss_pred ccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643 287 YNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC 366 (412)
Q Consensus 287 ~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a 366 (412)
||++||+.+.++|+++|++..+++|+|++++||+|+|+||++++++||+|+||||++||+++|+++|+||++|++|||++
T Consensus 163 yd~~L~~~~~~~a~~~gi~~~~~~Gvy~~~~Gp~feT~AE~~~~r~~Gad~VgMe~~pea~lAr~~gi~~~~i~~VTd~a 242 (285)
T 3khs_A 163 YDKTLRKYAISAARELGMSYATHEGVYCCVNGPSFETPAECKILRLMGSDAVGMSTAPETIVAKHGGMRCLAVSLISNVI 242 (285)
T ss_dssp BCHHHHHHHHHHHHHHTCGGGEEEEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHTTCEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHcCCCcceeeEEEEEecCCEEeCHHHHHHHHHcCCcEEeccHHHHHHHHHHCCCCEEEEEEEeccc
Confidence 99999999999999999864589999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643 367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEH 406 (412)
Q Consensus 367 ~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~ 406 (412)
+|.++++++++|+||++.+++++.++.+||.++|++|+.+
T Consensus 243 ~g~~~~~~~~s~~ev~~~~~~~~~~~~~lv~~~i~~l~~~ 282 (285)
T 3khs_A 243 ASNCETPAEPTHEEVLRAGEEASARMTALVKLVIEKIRGE 282 (285)
T ss_dssp CTTCC------------CHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 8755578899999999999999999999999999999765
No 3
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.7e-65 Score=498.34 Aligned_cols=282 Identities=52% Similarity=0.939 Sum_probs=268.9
Q ss_pred hhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecce
Q psy9643 126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGR 205 (412)
Q Consensus 126 ~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr 205 (412)
+.+++++++++||+++++.+|++|||+||||+++++.+++..+++|+++|+||.++++||++++++|+++|++|++++||
T Consensus 40 ~~~~~~~~~~~~i~~~~~~~p~igiI~GSGL~~l~~~~~~~~~i~y~~ipgfp~stv~Ghsg~l~~G~l~G~~Vv~m~Gr 119 (324)
T 3phb_E 40 YTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRSTVPGHAGRLVFGFLNGRACVMMQGR 119 (324)
T ss_dssp SCHHHHHHHHHHHHTTCCCCCSEEEEECTTCGGGGTTCEEEEEEEGGGSTTCCCCCSTTCCCEEEEEEETTEEEEEEESC
T ss_pred chHHHHHHHHHHHHHhcCCCCcEEEEecCcHHHHHhhccCcEEEecccCCCCCCCCCCCCcCceEEEEECCEEEEEEeCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcc
Q psy9643 206 FHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNK 285 (412)
Q Consensus 206 ~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~ 285 (412)
.|.||||+|++++|++++++.+||+.||++|++|++++++++||+|+++||||++++++.+||.|++...+|++|+++++
T Consensus 120 ~H~yeG~~~~~V~~~~~ll~~lGv~~II~tgaaGgL~~~l~~GDlVi~~d~Id~t~~~~~~pl~G~~~~~~g~~~~~m~~ 199 (324)
T 3phb_E 120 FHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSD 199 (324)
T ss_dssp CCGGGTCCHHHHTHHHHHHHHHTCCEEEEEEEEEECSTTCCTTCEEEEEEEEEHHHHHTCCTTCSSCCTTTCCSSCBCTT
T ss_pred ccccCCCChHHHHHHHHHHHHcCCCEEEEecceeecCCCCCCCCEEEEhhHccCcCCcCCCCCcCCCccccCCCcCccCC
Confidence 99999999999999999999999999999999999999999999999999999986667999999888888999999999
Q ss_pred cccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeecc
Q psy9643 286 AYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365 (412)
Q Consensus 286 ~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~ 365 (412)
+||++||+.+.++|+++|++..+++|+|++++||+|+|+||++++++||||+||||++||+++|+++|+||++|++|||+
T Consensus 200 ~yd~~Lr~~a~~aA~~~gi~~~~~~Gvy~~~~GP~FeT~AE~r~~r~~GadaVgMet~pEa~vAr~~gi~~~~Is~VTD~ 279 (324)
T 3phb_E 200 AYDRTMRQRALSTWKQMGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNK 279 (324)
T ss_dssp CSCHHHHHHHHHHHTTSCCSSCCEEEEEEECCCSSCCCHHHHHHHHHHTCSEEESSSHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCceEeceEEEEecCCEEeCHHHHHHHHHcCCcEEecChHHHHHHHHHCCCCEEEEEEEecc
Confidence 99999999999999999987238999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy9643 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQ 407 (412)
Q Consensus 366 a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~~ 407 (412)
++|.++++++++|+||++.+++++.++.+||.++|++|+.+.
T Consensus 280 a~~~~~~~~~vs~eevl~~a~~~~~~~~~Lv~~~i~~l~~~~ 321 (324)
T 3phb_E 280 VIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASIPLPD 321 (324)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCCC-
T ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 987555788999999999999999999999999999997643
No 4
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA, glycosyltransferase, transferase; 1.80A {Streptococcus mutans} PDB: 3lba_A*
Probab=100.00 E-value=2.6e-64 Score=489.86 Aligned_cols=267 Identities=41% Similarity=0.696 Sum_probs=237.3
Q ss_pred hHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEeccee
Q psy9643 127 TYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRF 206 (412)
Q Consensus 127 ~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~ 206 (412)
.+++++++++||+++++..|++|||+||||+++++.+++..+++|+++|+||+++++||++++++|+++|++|++++||.
T Consensus 37 ~~~~~~~~~~~i~~~~~~~p~igiI~GSGl~~l~~~~~~~~~i~y~~ip~fp~stv~Gh~g~l~~G~l~G~~Vv~~~Gr~ 116 (303)
T 3la8_A 37 LLKKIYETRDFLTAKGVQKPEFGLILGSGLGELAEEIENALVLNYADIPNWGRSTVSGHAGKLIYGELAGRKVLALQGRF 116 (303)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSEEEECCTTCGGGGGGCEEEEEEEGGGSTTCC---------EEEEEEETTEEEEEEC-CC
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEccCcHhHHHhhccCcEEEecccCCCCCCCCCCCCcCceEEEEECCEEEEEEecCc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy9643 207 HYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA 286 (412)
Q Consensus 207 H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~ 286 (412)
|.||||+|+++||++|+++.+||+.||++|++|++| +++||+|+++||||+++ .+|+.|.+...+|++|++++++
T Consensus 117 H~yEG~~p~~V~~~i~~l~~lGv~~II~t~aaGgL~--l~~GDlVi~~d~I~~t~---~~pl~g~~~~~~G~~f~~m~~~ 191 (303)
T 3la8_A 117 HYYEGNSMELVTFPIRIMKALGCQGLIVTNAAGGIG--FGPGTLMAISDHINLTG---ANPLMGENLDDFGFRFPDMSNA 191 (303)
T ss_dssp CGGGC-CHHHHHHHHHHHHHHTCCEEEEEEEEEESS--SCTTEEEEEEEEEECSS---CCTTCC-CCGGGCCCSCCCTTS
T ss_pred ccccCCCHHHHHHHHHHHHHcCCCEEEEecceeccc--cCCCcEEEEhhHhhhcC---CCCCcCCcccccCCCcCCCCcc
Confidence 999999999999999999999999999999999999 99999999999999987 6899888888889999999999
Q ss_pred ccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643 287 YNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC 366 (412)
Q Consensus 287 ~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a 366 (412)
||++||+.+.++|+++|++ +++|+|++++||+|+|+||++++|+||||+||||++||+++|+++|+||++|++|||++
T Consensus 192 yd~~Lr~~a~~aA~~~gi~--~~~Gvy~~~~GP~FeT~AE~r~~r~~GadaVgMst~pEa~vAre~gi~~~~Is~ITD~a 269 (303)
T 3la8_A 192 YTADYREVAHQVADKIGIK--LDEGVYIGVSGPSYETPAEIRAFKTLGADAVGMSTVPEVIVAVHSGLKVLGISAITNYA 269 (303)
T ss_dssp SCHHHHHHHHHHHHHHTCC--CEEEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHTTCEEEEEEEEEEEC
T ss_pred cCHHHHHHHHHHHHHcCCc--eEEEEEEEeeCCccCCHHHHHHHHHcCCCEEeccHHHHHHHHHHcCCCEEEEEEEeecC
Confidence 9999999999999999998 88999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 367 ~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
+| .+++++|+||++.+++++.++.+||.++|++|
T Consensus 270 ~g---~~~~vs~eevl~~a~~~~~~~~~ll~~~i~~~ 303 (303)
T 3la8_A 270 AG---FQSELNHEEVVAVTQQIKEDFKGLVKAILVEL 303 (303)
T ss_dssp TT---C---------CCHHHHHHHHHHHHHHHHHHHC
T ss_pred CC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 75 46789999999999999999999999999875
No 5
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A*
Probab=100.00 E-value=1.4e-61 Score=470.15 Aligned_cols=269 Identities=41% Similarity=0.717 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHhhhc-CCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEeccee
Q psy9643 128 YELIQSIAKFLLDSI-SIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRF 206 (412)
Q Consensus 128 ~~~~~~~~~~i~~~~-~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~ 206 (412)
+++++++++||++++ ..+|++|||+||||+++++.+++...+||+++|+||.++++||+++++.|+++|++|++++||.
T Consensus 15 ~~~~~~~~~~i~~~~~~~~p~igiI~GSGl~~l~~~~~~~~~~py~~ip~fp~stv~gh~g~l~~G~l~G~~Vv~l~Gr~ 94 (287)
T 3odg_A 15 NELPFQAVKYIQKIKPGFKPQIAFILGSGLGDLVDQITNDTTISYADIPGFPVSSVHGHAGELVLGDLCGVPVMCMKGRG 94 (287)
T ss_dssp GGHHHHHHHHHHHHSTTCCCSEEEEECTTTGGGGGGCEEEEEEEGGGSTTCCCCSSTTCCCEEEEEEETTEEEEEEESCC
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEecCChhHhhhcccceEEeccccCCCCCCCccCCCCceEEEEEECCEEEEEEECCC
Confidence 467889999999999 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy9643 207 HYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA 286 (412)
Q Consensus 207 H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~ 286 (412)
|.||||+++.+.+++|+++.+||+.||++|++|++++++++||+|+++|+||+++ .+|+.|++...+|++|++++++
T Consensus 95 H~~eg~~~~~~~a~i~~l~~lGv~~II~tgaaGgl~~~l~~GDlVi~~d~i~~t~---~~p~~g~~~~~~G~~~~~~~~~ 171 (287)
T 3odg_A 95 HFYEGKGMSIMTNPVRTFKLMGCEFLFCTNAAGSLRPEVLPGSVVMLKDHINTMP---GTPLVGPNDDRFGPRFFSLANA 171 (287)
T ss_dssp CGGGTTCGGGGHHHHHHHHHTTCSEEEEEEEEEESSTTSCTTCEEEEEEEECCSS---SCTTCSSCCTTTCCSSCCCTTS
T ss_pred cccCCCCHHHHHHHHHHHHHcCCCEEEEecceeccCCCCCCCCEEEehhhhhccC---CCCccCCCccccCCCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999987 6899888877889999999999
Q ss_pred ccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643 287 YNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC 366 (412)
Q Consensus 287 ~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a 366 (412)
||++||+.+.++|+++|++ +++|+|++++||+|+|+||+++++++|+|+||||++||+++|+++|+||++|++|||++
T Consensus 172 ~d~~L~~~a~~aA~~~gi~--~~~Gvy~~~~Gp~feT~AE~~~~r~~GadaVgMe~~pea~vA~~~gi~~~~I~~VSD~a 249 (287)
T 3odg_A 172 YDKDLRADMAKIAQQLDIP--LTEGVFVSYPGPCFETPAEIRMMQIIGGDVVGMSVVPEVLSAAHCGLKVIALTAITNLA 249 (287)
T ss_dssp SCHHHHHHHHHHHHHHTCC--CEEEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHHTCEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEEEEEecCCccCCHHHHHHHHHcCCEEEeCcHHHHHHHHHHcCCCEEEEEEEEccc
Confidence 9999999999999999998 88999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 367 ~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
+| .++++++|+||++.+++++.++.+||.++|+++
T Consensus 250 ~g--~~~~~~s~eev~~~a~~~~~~~~~ll~~~i~~~ 284 (287)
T 3odg_A 250 EG--LSDVVLSHEQTLKFAKVASVNFTKLIEAFLKSK 284 (287)
T ss_dssp TT--SSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 457899999999999999999999999999988
No 6
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1
Probab=100.00 E-value=3e-60 Score=459.10 Aligned_cols=264 Identities=41% Similarity=0.707 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecceee
Q psy9643 128 YELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFH 207 (412)
Q Consensus 128 ~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~H 207 (412)
..+++++++||++++...+++|||+||||+++++.+++..++||.++|+|+++|++||++++++|+++|++|++++||.|
T Consensus 14 ~~~~~~~~~~i~~~~~~~p~igiI~GSGl~~l~~~~~~~~~~py~~ip~f~~~t~~Gh~~~l~~G~l~G~~Vv~~~GrgH 93 (277)
T 1vmk_A 14 MKKIEEARTFISERTNLSPDILIILGSGFGPFIEKVEDPVIIDYKDIPHFPQPTVEGHSGKLVFGRISDKPVMIMAGRFH 93 (277)
T ss_dssp HHHHHHHHHHHHTTCCCCCSEEEEEC---CTTTTTCEEEEEEEGGGSTTCC--------CEEEEEEETTEEEEEEESCCC
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEccCchhhHhhhcccceEEecccCCCCCCCCCCCCCceEEEEEECCEEEEEEecCCc
Confidence 46788999999999888999999999999999989999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccc
Q psy9643 208 YYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAY 287 (412)
Q Consensus 208 ~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~ 287 (412)
.||||+|+++||++|+++.+||+.||++|++|++++++++||+|+++|+||+++ .+|+.|.+...+|++|++++++|
T Consensus 94 ~yeG~~p~~V~~~i~~l~~lGv~~II~tgaaG~l~~~l~~GDlVi~~d~i~~t~---~~p~~g~~~~~~g~~~~~~~~~~ 170 (277)
T 1vmk_A 94 LYEGHDPATVAFPVYLAKYVGVKGVVVTNAAGAINPEFKPGEIILVRDIINFMF---RNPLRGPNDEKIGPRFPDMSSVV 170 (277)
T ss_dssp GGGTCCHHHHHHHHHHHHHHTCCEEEEEEEEEECSTTCCTTCEEEEEEEEECSC---CCTTCSCCCTTTCCSSCCCTTCS
T ss_pred ccCCCCHHHHHHHHHHHHHcCCCEEEEecceecCCCCCCCCCEEEEhHHHhhCC---CCCcccCCCcccCcccCCCcccc
Confidence 999999999999999999999999999999999999999999999999999987 68988887777888999999999
Q ss_pred cHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643 288 NKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV 367 (412)
Q Consensus 288 d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~ 367 (412)
|++||+. ++++ ++ +++|+|++++||+|+|+||++++++||||+||||++||+++|+++|+||++|++|||+++
T Consensus 171 d~~L~~~---~a~~--i~--~~~Gvy~~~~Gp~feT~AE~~~~r~~Gad~VgMe~~pea~lAr~~gi~~~~I~~ITD~a~ 243 (277)
T 1vmk_A 171 DPEWARK---IQER--LS--LKEGVYIGVLGPSYETPAEIRVFEKLGADLVGMSTVPEVIAAKHCGLKVVVFSCVTNMAA 243 (277)
T ss_dssp CHHHHHH---HHHH--HC--CEEEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHHTCEEEEEEEEEEECT
T ss_pred CHHHHHH---Hhhh--CC--CceEEEEEeeCCcccCHHHHHHHHHcCCeEEecChHHHHHHHHHCCCCEEEEEEEecCcc
Confidence 9999999 5555 66 889999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 368 TDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 368 ~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
| ..+++++++|+++.+++++.++.+++.++|+++
T Consensus 244 g--~~~~~~s~eev~~~~~~~~~~~~~lv~~~i~~~ 277 (277)
T 1vmk_A 244 G--ITHGRLSHEEVVRTTKMAQGKIEKALTTAVEVF 277 (277)
T ss_dssp T--C-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6 346789999999999999999999999999763
No 7
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A*
Probab=100.00 E-value=8.5e-60 Score=458.85 Aligned_cols=275 Identities=46% Similarity=0.797 Sum_probs=244.2
Q ss_pred hHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEeccee
Q psy9643 127 TYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRF 206 (412)
Q Consensus 127 ~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~ 206 (412)
.+++++++++||+++....|++|||+||||+++++.+++..+++|+++|+|++.+++||++++++|+++|++|++++||.
T Consensus 8 ~~~~~~~~~~~i~~~~~~~p~igiI~GSGl~~l~~~l~~~~~i~y~~ip~f~~~t~~Gh~g~l~~G~l~G~~V~~~~G~g 87 (287)
T 1tcv_A 8 NIENVKKVAHHIQKLTSIVPEIGIICGSGLGKLADGVKDKITIPYTKIPNFPQTSVVGHSGNLIFGTLSGRKVVVMQGRF 87 (287)
T ss_dssp SHHHHHHHHHHHHHHCCCCCSEEEECCTTCGGGGTTCEEEEEEEGGGSTTSCCCC---CCCEEEEEEETTEEEEEEESCC
T ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEcCCchhhHHhhcceeEEEecccCCCCCCCCCCCCCceEEEEEECCEEEEEEecCC
Confidence 45788999999999999899999999999999998999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy9643 207 HYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA 286 (412)
Q Consensus 207 H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~ 286 (412)
|.||||+|++++|++|+++.+||+.||++|+||++++++++||+|+++|||++.++.+.+|+.+.+...+|++|++++++
T Consensus 88 H~yeG~~p~~V~~~i~~l~~lGv~~iI~tgaaG~l~~~~~~GDlVi~~d~i~~~g~t~~~~~~~~~~~~~g~~~~~~~~~ 167 (287)
T 1tcv_A 88 HMYEGYSNDTVALPIRVMKLLGVKILMVSNAAGGLNRSLKLGDFVILKDHIYLPGLGLNNILVGPNQEAFGTRFPALSNA 167 (287)
T ss_dssp CGGGTCCHHHHHHHHHHHHHHTCCEEEEEEEEEECSTTCCTTCEEEEEEEEEHHHHTTTCTTCSSCCTTTCCSSCCCTTS
T ss_pred cccCCCCHHHHHHHHHHHHHcCCCEEEEecceeecCCCCCCCCEEEEHHHhcccccCCCCCcccCCccccCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999222237888887776778899999999
Q ss_pred ccHHHHHHHHHHHH--HcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeec
Q psy9643 287 YNKQLRAATLDIAR--DLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364 (412)
Q Consensus 287 ~d~~Lr~~~~~~a~--~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd 364 (412)
||++||+.+.++++ +.|++ +++|+|++++||+|+|+||+++++++|||+||||++||+++|+++|+||++|++|||
T Consensus 168 ~d~~L~~~~~~~a~~~~~~~~--~~~Gvy~~~~Gp~feT~aE~~~~r~~Gad~VgMe~~~ea~vA~~~gi~~~~i~~Vtd 245 (287)
T 1tcv_A 168 YDRDLRKLAVQVAEENGFGNL--VHQGVYVMNGGPCYETPAECTMLLNMGCDVVGMSTIPEVVIARHCGIQVFAVSLVTN 245 (287)
T ss_dssp BCHHHHHHHHHHHHHTTCGGG--EEEEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHhhhcCCCc--eeeEEEEEecCCccCCHHHHHHHHHcCCcEEcccHHHHHHHHHHCCCCEEEEEEeec
Confidence 99999999999999 77887 899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643 365 KCVTDYDDH---AEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEH 406 (412)
Q Consensus 365 ~a~~~~~~~---~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~ 406 (412)
+++ . ++ ++++|+||++.+++++.++.+++.++|++|+.+
T Consensus 246 ~a~-~--~~~~~~~~~~eev~~~~~~~~~~~~~lv~~~i~~l~~~ 287 (287)
T 1tcv_A 246 ISV-L--DVESDLKPNHEEVLATGAQRAELMQSWFEKIIEKLPKD 287 (287)
T ss_dssp ECC-C--CTTCC-----------CHHHHHHHHHHHHHHHHHSCCC
T ss_pred ccc-c--cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 995 2 34 689999999999999999999999999998653
No 8
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A {Anopheles gambiae}
Probab=100.00 E-value=6.9e-57 Score=448.99 Aligned_cols=279 Identities=60% Similarity=1.062 Sum_probs=258.3
Q ss_pred hHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEeccee
Q psy9643 127 TYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRF 206 (412)
Q Consensus 127 ~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~ 206 (412)
.+++++++++||+++....+++|||+||||+++++.+++..+++|+++|+|++.|++||++++++|+++|++|++++||.
T Consensus 91 ~~~~~~~a~~~i~~~~~~~p~igIIgGSGL~~la~~le~~~~i~y~~ipgfp~sTv~Gh~g~l~~G~l~G~~Vvvm~Grg 170 (373)
T 2p4s_A 91 TYDTLQEIATYLLERTELRPKVGIICGSGLGTLAEQLTDVDSFDYETIPHFPVSTVAGHVGRLVFGYLAGVPVMCMQGRF 170 (373)
T ss_dssp CHHHHHHHHHHHHHHCCCCCSEEEEECTTCTHHHHTCEEEEEEEGGGSTTCCCCCSTTCCCEEEEEEETTEEEEEEESCC
T ss_pred CHHHHHHHHHHHHhccCCCCcEEEECCccHhHHHhhcCeeEEEecccCCCCCCCCCCCCCceeEEEEECCEEEEEEeCCC
Confidence 35788999999999988899999999999999988899999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy9643 207 HYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA 286 (412)
Q Consensus 207 H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~ 286 (412)
|.||||.+..+++++|+++.+||+.||++|+||++++++++||+|+++|+||+++..+.+|+.|.+...++++|++++++
T Consensus 171 H~yeg~~v~~v~a~i~llk~lGV~~II~tgaaGgL~~~l~pGDlVI~~d~Id~dd~t~~~pl~g~~~~~~gv~~~~ms~~ 250 (373)
T 2p4s_A 171 HHYEGYPLAKCAMPVRVMHLIGCTHLIATNAAGGANPKYRVGDIMLIKDHINLMGFAGNNPLQGPNDERFGPRFFGMANT 250 (373)
T ss_dssp CGGGTCCHHHHHHHHHHHHHHTCCEEEEEEEEEECSTTCCTTCEEEEEEEECHHHHTTCCTTCSCCCTTTCCSCBCCTTS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEEeccEeecCCCCCCCCEEEEhHHhcCcCcCCCCCccccCccccCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999322237899888777788899999999
Q ss_pred ccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643 287 YNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC 366 (412)
Q Consensus 287 ~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a 366 (412)
||++||+.+.++++++|++..+++|+|++++||+|+|+||+++|++||||+||||++||+++|+++|+||++|++|||++
T Consensus 251 yd~~Lr~~a~~aA~~~gi~~~~~~Gvyv~~~GP~FeT~AE~r~lr~~GadaVgMetapEa~lAre~Gi~~~~I~~VTD~a 330 (373)
T 2p4s_A 251 YDPKLNQQAKVIARQIGIENELREGVYTCLGGPNFETVAEVKMLSMLGVDAIGMSTVHEIITARHCGMTCFAFSLITNMC 330 (373)
T ss_dssp BCHHHHHHHHHHHHHTTCGGGEEEEEEEECCCSSCCCHHHHHHHHHTTCCEEESSSHHHHHHHHHTTCEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHcCCCcceeeEEEEEeeCCcccCHHHHHHHHHcCCeEEecChHHHHHHHHHcCCCEEEEEEeeccc
Confidence 99999999999999999832389999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy9643 367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405 (412)
Q Consensus 367 ~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~ 405 (412)
++.....++++|+||++.++++++++.++|.++|++|+.
T Consensus 331 ~~~~~~~~~vs~eEvle~~~~~~~~~~~Lv~~~I~~l~~ 369 (373)
T 2p4s_A 331 TMSYEEEEEHCHDSIVGVGKNREKTLGEFVSRIVKHIHY 369 (373)
T ss_dssp CCCSSSCCCCCHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 742111268999999999999999999999999999865
No 9
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A*
Probab=100.00 E-value=1.6e-56 Score=431.92 Aligned_cols=259 Identities=33% Similarity=0.551 Sum_probs=242.5
Q ss_pred hHHHHHHHHHHHhhhcCC-CCceeEeeCcCcccccccccCce-eeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecc
Q psy9643 127 TYELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSITDRH-IFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQG 204 (412)
Q Consensus 127 ~~~~~~~~~~~i~~~~~~-e~~~GIi~GsGl~~~~~~~~~~~-~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qg 204 (412)
.+++++++++||+++++. .+++|||+||||+++++.+++.. .+||+++|+||.++++||++++++|+++|++|++++|
T Consensus 8 ~~~~~~~~~~~i~~~~~~~~~~igiI~GSGl~~~~~~~~~~~v~~py~~~p~fp~~tv~gh~~~~~~G~l~G~~V~~~~G 87 (268)
T 1g2o_A 8 PDELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQAELPGFVPPTAAGHAGELLSVPIGAHRVLVLAG 87 (268)
T ss_dssp HHHHHHHHHHHHHHHHSCSCCSEEEEECTTCGGGSGGGCCCSEEEEGGGSTTCCCCCSTTCCCEEEEEEETTEEEEEEEC
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEcCCchhhhHHhhccceeEeecccCCCCCCCcccCCCCeEEEEEECCEEEEEEEC
Confidence 457888999999999887 89999999999999998888776 8999999999999999999999999999999999999
Q ss_pred eeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCc
Q psy9643 205 RFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMN 284 (412)
Q Consensus 205 r~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~ 284 (412)
|.|.||||+++.+++++|+++.+||+.||++|++|++++++++||+|+++||+|+++ .+||.|. .|++++
T Consensus 88 ~gh~~~~~~v~~~~a~i~~l~~lGv~~iI~tgaaG~l~~~l~~GDlVi~~d~i~~t~---~~~~~g~-------~~~~~~ 157 (268)
T 1g2o_A 88 RIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLRADLQVGQPVLISDHLNLTA---RSPLVGG-------EFVDLT 157 (268)
T ss_dssp CCCGGGTCCHHHHSHHHHHHHHTTCCEEEEEEEEEECSTTCCTTCEEEEEEEEECSS---CCSCCSS-------CCCCCT
T ss_pred CCcCCCCCCHHHHHHHHHHHHHcCCCEEEEecceecCCCCCCCCCEEEEhHHhhccC---CCcCCCC-------CCCCCC
Confidence 999999999999999999999999999999999999999999999999999999987 5777653 478899
Q ss_pred ccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeec
Q psy9643 285 KAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364 (412)
Q Consensus 285 ~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd 364 (412)
++||++||+.+.+++++ +++|+|++++||+|+|+||+++++++|+|+||||++||+++|+++|+||++|++|||
T Consensus 158 ~~~d~~L~~~~~~~a~~------~~~Gvy~~~~Gp~feT~aE~~~~~~~GadaVgMe~~~ea~lA~~~gi~~~~i~~VtD 231 (268)
T 1g2o_A 158 DAYSPRLRELARQSDPQ------LAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTN 231 (268)
T ss_dssp TSSCHHHHHHHHHHCTT------CEEEEEEECCCSSCCCHHHHHHHHHHTCSEEESSSHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cccCHHHHHHHHHHHHH------hCCCeEEEEeCCEEeCHHHHHHHHHcCCeEEecCHHHHHHHHHHcCCCEEEEEEEec
Confidence 99999999999999854 789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 365 KCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 365 ~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
+++| ..+++++|+|+++.+++++.++.+++.++|+++
T Consensus 232 ~a~g--~~~~~~s~eev~~~~~~~~~~~~~lv~~~i~~~ 268 (268)
T 1g2o_A 232 LAAG--ITGEPLSHAEVLAAGAASATRMGALLADVIARF 268 (268)
T ss_dssp ECTT--SSCCCCCHHHHHHHHHTTHHHHHHHHHHHHHHC
T ss_pred Cccc--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9976 346789999999999999999999999999874
No 10
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A
Probab=100.00 E-value=2.4e-54 Score=416.26 Aligned_cols=249 Identities=31% Similarity=0.523 Sum_probs=232.2
Q ss_pred hHHHHHHHHHHHhhhcCC-CCceeEeeCcCcccccccccCce-eeecCCCCCccccCCCCCceeEEEEeeCC-----eEE
Q psy9643 127 TYELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSITDRH-IFPYDTIPYFPVSTVPGHKGQLVFGLING-----IPI 199 (412)
Q Consensus 127 ~~~~~~~~~~~i~~~~~~-e~~~GIi~GsGl~~~~~~~~~~~-~~~~~~~~~~~i~d~pGH~~~l~~G~~~g-----~~v 199 (412)
.+++++++++||++++.. .+++|||+||||+++++.+++.. .++|+++|+||. ++++|.++| ++|
T Consensus 10 ~~~~~~~~~~~i~~~~~~~~p~igiI~GSGl~~l~~~~~~~~v~~~y~~ipg~p~--------~l~~G~l~G~~~~~~~V 81 (266)
T 1qe5_A 10 PFLVARAAADHIAQATGVEGHDMALVLGSGWGGAAELLGEVVAEVPTHEIPGFSS--------VTRSIRVERADGSVRHA 81 (266)
T ss_dssp HHHHHHHHHHHHHHHHCCSCCSEEEECCTTCTTTTTTSCEEEEEEEGGGSTTCCC--------EEEEEEEECTTSCEEEE
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCchhhhHhhhccceEEEecCCCCCCCe--------EEEEEEECCcCCCceEE
Confidence 467889999999999887 79999999999999988888877 899999999986 799999999 999
Q ss_pred EEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q psy9643 200 MCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPR 279 (412)
Q Consensus 200 v~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~ 279 (412)
++++||.|.||||+|+++++++|+++.+||+.||++|++|++++++++||+|+++|||++++ .+||.| +.
T Consensus 82 v~~~Gr~h~yeg~~p~~V~a~i~~l~~lGv~~iI~tgaaG~l~~~l~~GDlVi~~d~i~~t~---~~~~~g-------~~ 151 (266)
T 1qe5_A 82 LVLGSRTHLYEGKGVRAVVHGVRTAAATGAETLILTNGCGGLNQEWGAGTPVLLSDHINLTA---RSPLEG-------PT 151 (266)
T ss_dssp EECCSCCCGGGSSCHHHHSHHHHHHHHTTCCEEEEEEEEEECCTTSCTTCEEEEEEEEECSS---CCSCCS-------SC
T ss_pred EEEECCccccCCCCHHHHHHHHHHHHHcCCCEEEEecceecCCCCCCCCCEEEEhHHhhhCC---CCCCCC-------CC
Confidence 99999999999999999999999999999999999999999999999999999999999987 577654 34
Q ss_pred CCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEE
Q psy9643 280 FPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAF 359 (412)
Q Consensus 280 ~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i 359 (412)
|++++++||++||+.+.++++ . +++|+|++++||+|+|+||+++++++|||+||||++||+++|+++|+||++|
T Consensus 152 ~~~~~~~~d~~L~~~~~~~a~----~--~~~Gvy~~~~Gp~feT~aE~~~~r~~Gad~VgMe~~pea~lAr~~gi~~~~i 225 (266)
T 1qe5_A 152 FVDLTDVYSPRLRELAHRVDP----T--LPEGVYAQFPGPHYETPAEVRMAGILGADLVGMSTTLEAIAARHCGLEVLGV 225 (266)
T ss_dssp CCCCTTSBCHHHHHHHHHHCT----T--CCEEEEEECCCSSCCCHHHHHHHHHHTCSEEESSSHHHHHHHHHTTCEEEEE
T ss_pred CCCCCcccCHHHHHHHHHHHH----H--hCCCeEEEeeCCEEeCHHHHHHHHHcCCeEEecChHHHHHHHHHCCCCEEEE
Confidence 788999999999999999985 3 7899999999999999999999999999999999999999999999999999
Q ss_pred EeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643 360 SLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVS 401 (412)
Q Consensus 360 ~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~ 401 (412)
++|||+++| ..+++++|+|+++.+++++.++.+||.++|+
T Consensus 226 ~~Vtd~a~g--~~~~~~s~eev~~~~~~~~~~~~~ll~~~i~ 265 (266)
T 1qe5_A 226 SLVTNLAAG--ISPTPLSHAEVIEAGQAAGPRISALLADIAK 265 (266)
T ss_dssp EEEEEECTT--TCSSCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCccc--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999976 3467899999999999999999999999885
No 11
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.6e-49 Score=381.21 Aligned_cols=238 Identities=22% Similarity=0.322 Sum_probs=209.4
Q ss_pred CCCceeEeeCcCccccccc---ccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEec--ceeeeecCCCCcccc
Q psy9643 144 IRPKIGIICGSGLSTIADS---ITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ--GRFHYYEGYPLWKCA 218 (412)
Q Consensus 144 ~e~~~GIi~GsGl~~~~~~---~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~q--gr~H~yeg~~~~~v~ 218 (412)
..|++|||+||||+++++. .++...+||.+ |++++++|+++|++|++++ |+.|.| +|+.+|
T Consensus 14 ~~p~igiI~GSGl~~l~~~~~~~~~~~~tpyg~-----------~s~~l~~G~l~G~~Vv~l~rhG~gh~~---~~~~V~ 79 (259)
T 3ozb_A 14 GMSVYAIIGGTGLTQLEGLTLSESLPIETPYGA-----------PSAPLQRGRYAGREVLFLARHGHPHRF---PPHQVN 79 (259)
T ss_dssp -CCCEEEEECTTSTTCTTCCCCCCBCCCBTTBC-----------CSSCBEEEEETTEEEEEEESSCC---C---CGGGSC
T ss_pred CCCCEEEEccCCcchhhhcccccceeEEccCCC-----------CcceEEEEEECCEEEEEEeCcCCCccc---Chhhcc
Confidence 4689999999999998752 12233444443 7889999999999999998 999985 799999
Q ss_pred HH--HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHH
Q psy9643 219 MP--IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATL 296 (412)
Q Consensus 219 ~~--i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~ 296 (412)
|+ +|+++.+||+.||++|++|++++++++||+|+++|++++++.++.+++.+. .++++|++++++||++|++.+.
T Consensus 80 ~~a~i~~l~~~Gv~~II~tgaaGgl~~~l~~GDlVi~~d~i~~~~~~~~t~~~~~---~~~~~~~~~~~~~d~~L~~~~~ 156 (259)
T 3ozb_A 80 YRANLWALKQAGAEAVIAVNAVGGIHAAMGTGHLCVPHQLIDYTSGREHTYFAGD---IEHVTHIDFSHPYDEPLRQRLI 156 (259)
T ss_dssp HHHHHHHHHHHTCSEEEEEEEEEECSTTSCTTCEECCSEEEECCCSSCCCSSSSS---CSSCCCCCCSSCSCHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEccceeecccccCCCCEEEehhhcccCCCCCCcCCCCc---ccCCCcCccCCCCCHHHHHHHH
Confidence 96 899999999999999999999999999999999999999985555655432 3678899999999999999999
Q ss_pred HHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCC
Q psy9643 297 DIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEA 376 (412)
Q Consensus 297 ~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~ 376 (412)
++++++|++ ++++|+|++++||+|+|+||+++++++|+|+||||++||+++|+++|+||++|++|||+++| ..++++
T Consensus 157 ~~a~~~gi~-~~~~Gvy~~~~Gp~fet~aE~~~~~~~GadaVgMe~~~ea~vA~~~gi~~~~I~~ISD~a~~--~~~~~~ 233 (259)
T 3ozb_A 157 EALRALGLA-HSSHGVYACTQGPRLETVAEIARLERDGNDIVGMTGMPEAALARELDLPYACLALVVNPAAG--KSAGII 233 (259)
T ss_dssp HHHHHTTCC-EESCCEEEECCCSSCCCHHHHHHHHHTTCSEEESSSTTHHHHHHHTTCCEEEEEEEEEECTT--TSSSCC
T ss_pred HHHHHcCCC-eEeeeEEEEEeCCccCCHHHHHHHHHcCCEEEcCcHHHHHHHHHHcCCCeEEEEEEEeCCCC--cCCCCC
Confidence 999999997 67899999999999999999999999999999999999999999999999999999999987 456779
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643 377 NHEEVIQAGKLRGPMIKSMVTRIVS 401 (412)
Q Consensus 377 s~~ev~~~~~~~~~~~~~ll~~~i~ 401 (412)
+|+||++.++++++++.+||.++|+
T Consensus 234 s~eev~~~a~~~~~~~~~l~~~~i~ 258 (259)
T 3ozb_A 234 TMAEIEQALHDGIGKVREVLARVLA 258 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998874
No 12
>1wta_A 5'-methylthioadenosine phosphorylase; A/B structure, transferase; HET: ADE; 1.78A {Aeropyrum pernix}
Probab=100.00 E-value=5.4e-46 Score=360.32 Aligned_cols=245 Identities=24% Similarity=0.383 Sum_probs=214.0
Q ss_pred HhhhcCCCCceeEeeCcCccccc---ccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEec--ceeeeecCC
Q psy9643 138 LLDSISIRPKIGIICGSGLSTIA---DSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ--GRFHYYEGY 212 (412)
Q Consensus 138 i~~~~~~e~~~GIi~GsGl~~~~---~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~q--gr~H~yeg~ 212 (412)
|.++....+++|||+|||++.++ +.+++...++|. +|+++++.|+++|++|++++ |+.|.|
T Consensus 4 i~~~~~~~~~igIIggsgl~e~~~l~~~~~~~~~~~~g-----------~~~~~~~~G~~~G~~V~v~~r~G~gh~~--- 69 (275)
T 1wta_A 4 ITRPPGVRAHVGVIGGSGLYDPGIVENPVEVKVSTPYG-----------NPSDFIVVGDVAGVKVAFLPRHGRGHRI--- 69 (275)
T ss_dssp CEESTTCCCSEEEEECGGGCCTTTCEEEEEEEECCTTC-----------CCSSCEEEEEETTEEEEEEETTTTTTCS---
T ss_pred cccccCCCCCEEEEecCChhhhhhhhhhceeeeEEecC-----------CCcceEEEEEECCEEEEEEECCCCCCcc---
Confidence 34556667899999999998763 333333333322 15779999999999999997 999986
Q ss_pred CCccccH--HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCC-CCCCCCCCCCCCCCCCCCcccccH
Q psy9643 213 PLWKCAM--PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN-NPLLGVNEDRFGPRFPPMNKAYNK 289 (412)
Q Consensus 213 ~~~~v~~--~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~-~pl~g~~~~~~g~~~~~~~~~~d~ 289 (412)
+|+++|| ++++++.+||+.||++|++|++++++++||+|+++|++++++ . +|+.+.+.. +++|++++++||+
T Consensus 70 ~~~~v~~~a~~~~l~~~Gv~~iI~~gaaG~l~~~l~~GDlVi~~~~i~~~~---~~~~~~~~~~~--g~~~~~~~~~~d~ 144 (275)
T 1wta_A 70 PPHAINYRANIWALKALGVKWVISVSAVGSLREDYRPGDFVVPDQFIDMTK---NRRHYTFYDGP--VTVHVSMADPFCE 144 (275)
T ss_dssp CGGGCCHHHHHHHHHHHTCCEEEEEEEEEESSTTSCTTCEECCCEEEEECC---CCSCSCSCCSS--SCBCCCCSSCSCH
T ss_pred ChhhhhHHHHHHHHHHcCCCEEEEecceeccCCCCCCCCEEEEhHHhhhcC---CCCccccCCCC--CcccCCCCcccCH
Confidence 8999999 899999999999999999999999999999999999999987 4 554433321 5678899999999
Q ss_pred HHHHHHHHHHHHcCCCccee-eceEEEEecCccCCHHHHHHHH-HcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643 290 QLRAATLDIARDLNMSSIVK-EGVYSVIGGPNFETVAELNMLR-ICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV 367 (412)
Q Consensus 290 ~Lr~~~~~~a~~~g~~~~~~-~Gvy~~~~GP~feT~AE~~~~~-~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~ 367 (412)
+|++.+.++++++|++ ++ .|+|++++||+|+|+||+++++ ++|+|+||||++||+++|+++|+||++|++|||+++
T Consensus 145 ~L~~~l~~~a~~~g~~--~~~~Gv~~~~~Gp~f~t~ae~~~~~~~~GadaV~Me~a~ea~vA~~~gi~~~~i~~Vsd~a~ 222 (275)
T 1wta_A 145 DLRQRLIDSGRRLGYT--VHERGTYVCIEGPRFSTRAESRVWKDVFKADIIGMTLVPEINLACEAQLCYATLAMVTDYDV 222 (275)
T ss_dssp HHHHHHHHHHHHHTCC--EESCCEEEEECCSSCCCHHHHHHHHHTSCCSEEESSHHHHHHHHHHTTCEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHcCCc--eecceEEEEecCCEecCHHHHHHHHHHcCCEEEcccHHHHHHHHHHCCCCEEEEEEEEccCC
Confidence 9999999999999998 66 9999999999999999999999 899999999999999999999999999999999996
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643 368 TDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEH 406 (412)
Q Consensus 368 ~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~ 406 (412)
+. . ++++|+|+++.++++++++.+++.++|++|+.+
T Consensus 223 ~~--~-~~~~~~e~~~~~~~~~~~~~~lv~~~i~~l~~~ 258 (275)
T 1wta_A 223 WA--D-RPVTAEEVERVMISNVERARRMLYDVIPKLAGE 258 (275)
T ss_dssp SS--S-SCCCHHHHHHHHHHHHHHHHHHHHHHGGGCSSC
T ss_pred CC--C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 52 2 789999999999999999999999999999653
No 13
>2a8y_A 5'-methylthioadenosine phosphorylase (MTAP); alpha/beta, beta sheet, beta barrel, transferase; HET: MTA; 1.45A {Sulfolobus solfataricus} PDB: 3t94_A* 1v4n_A
Probab=100.00 E-value=2.2e-45 Score=355.12 Aligned_cols=240 Identities=26% Similarity=0.383 Sum_probs=209.4
Q ss_pred CCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCC-ceeEEEEeeCCeEEEEec--ceeeeecCCCCccccH--
Q psy9643 145 RPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH-KGQLVFGLINGIPIMCMQ--GRFHYYEGYPLWKCAM-- 219 (412)
Q Consensus 145 e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH-~~~l~~G~~~g~~vv~~q--gr~H~yeg~~~~~v~~-- 219 (412)
.+++|||+|||++.++ .+.+..+. +..+..|+ ++++++|+++|++|++++ |+.|.| +|+++||
T Consensus 7 ~p~igIIggsgl~e~~-~l~~~~~~--------~~~~~~g~p~~~~~~G~~~G~~V~~~~r~G~gh~~---~~~~v~~~a 74 (270)
T 2a8y_A 7 KASIGIIGGSGLYDPG-IFSESKEI--------KVYTPYGQPSDFITIGKIGNKSVAFLPRHGRGHRI---PPHKINYRA 74 (270)
T ss_dssp CCSEEEEECTTCSSCS-CCSSEEEE--------CCCCTTCCCSSCEEEEEETTEEEEEEETTTGGGCC---CGGGCCHHH
T ss_pred CCCEEEEecCchhHHH-HHHhhhee--------eeEEEecCCcceEEEEEECCEEEEEEECCCCCCCc---CchhhhhHH
Confidence 5789999999998764 22222211 12233455 568999999999999997 999996 8999999
Q ss_pred HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHH
Q psy9643 220 PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIA 299 (412)
Q Consensus 220 ~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a 299 (412)
++++++.+||+.||++|++|++++++++||+|+++|++++++ .+|+.+.+.. +++|++++++||++|++.+.+++
T Consensus 75 ~~~~l~~~Gv~~iI~~gaaG~l~~~l~~GDlVi~~~~i~~~~---~~~~~~~~~~--g~~~~~~~~~~d~~L~~~~~~~a 149 (270)
T 2a8y_A 75 NIWALKELGVRWVISVSAVGSLRMDYKLGDFVIPDQFIDMTK---NREYSFFDGP--VVAHVSMADPFCNSLRKLAIETA 149 (270)
T ss_dssp HHHHHHHTTCCEEEEEEEEEESSTTSCTTCEECCCEEEEECC---SCCCCSCCSS--SCBCCCCSSCSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeeeeeccCCCCCCCCEEEEhHHhhccC---CCCCcccCCC--CCccCCCCcccCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999987 4554433221 56788999999999999999999
Q ss_pred HHcCCCccee-eceEEEEecCccCCHHHHHHHH-HcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCC
Q psy9643 300 RDLNMSSIVK-EGVYSVIGGPNFETVAELNMLR-ICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEAN 377 (412)
Q Consensus 300 ~~~g~~~~~~-~Gvy~~~~GP~feT~AE~~~~~-~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s 377 (412)
+++|++ ++ .|+|++++||+|+|+||+++++ ++|+|+||||++||+++|+++|+||++|++|||++++ . +++++
T Consensus 150 ~~~g~~--~~~~Gv~~~~~Gp~fet~ae~~~~~~~~GadaV~Me~a~ea~vA~~~gi~~~~i~~Vsd~a~~--~-~~~~~ 224 (270)
T 2a8y_A 150 KELNIK--THESGTYICIEGPRFSTRAESRTWREVYKADIIGMTLVPEVNLACEAQMCYATIAMVTDYDVF--A-EIPVT 224 (270)
T ss_dssp HHHTCC--EESCCEEEEECCSSCCCHHHHHHHHHTTCCCEEESSHHHHHHHHHHTTCEEEEEEEEEECTTS--S-SSCCC
T ss_pred HHcCCe--EEcceEEEEecCCEecCHHHHHHHHHHcCCEEECCcHHHHHHHHHHCCCCEEEEEEEEecCCC--C-CCCCC
Confidence 999998 66 9999999999999999999999 9999999999999999999999999999999999964 2 56799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643 378 HEEVIQAGKLRGPMIKSMVTRIVSYIGEH 406 (412)
Q Consensus 378 ~~ev~~~~~~~~~~~~~ll~~~i~~l~~~ 406 (412)
|+|+++.+++++.++.+++.++|++|+.+
T Consensus 225 ~ee~~~~~~~~~~~~~~lv~~~i~~l~~~ 253 (270)
T 2a8y_A 225 AEEVTRVMAENTEKAKKLLYALIQKLPEK 253 (270)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999654
No 14
>1cb0_A Protein (5'-deoxy-5'-methylthioadenosine phosphor; methylthioadenosine phosphorylase, purine nucleoside phospho purine salvage, adenine; HET: ADE; 1.70A {Homo sapiens} SCOP: c.56.2.1 PDB: 1cg6_A* 1k27_A* 1sd1_A* 1sd2_A* 3ozc_A* 3ozd_A* 3oze_A
Probab=100.00 E-value=2e-40 Score=322.65 Aligned_cols=247 Identities=26% Similarity=0.382 Sum_probs=204.9
Q ss_pred CCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCC-CceeEEEEeeCCeEEEEe--cceeeeecCCCCccccH-
Q psy9643 144 IRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPG-HKGQLVFGLINGIPIMCM--QGRFHYYEGYPLWKCAM- 219 (412)
Q Consensus 144 ~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pG-H~~~l~~G~~~g~~vv~~--qgr~H~yeg~~~~~v~~- 219 (412)
..+++|||+|||+..+ +.+++..+..+ .+.+| |+++++.|.++|++|+++ +|+.|.| +|+.+|+
T Consensus 8 ~~~~igII~gsg~e~~-~~l~~~~~~~~--------~~p~g~~~~~~~~G~l~g~~V~~~~~~G~G~~~---~~~~v~aa 75 (283)
T 1cb0_A 8 TAVKIGIIGGTGLDDP-EILEGRTEKYV--------DTPFGKPSDALILGKIKNVDCVLLARHGRQHTI---MPSKVNYQ 75 (283)
T ss_dssp -CCEEEEEECTTCCCG-GGSEEEEEECC--------CBTTBCCSSCEEEEEETTEEEEEEETTTTTTCC---CGGGCCHH
T ss_pred CCCCEEEEecCCchhh-hhcccceeeee--------ecCCCCCCccEEEEEECCEEEEEEECCCCCccc---CcccccHH
Confidence 4578999999999875 23333333222 22234 567899999999999996 6999987 7788888
Q ss_pred -HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHH
Q psy9643 220 -PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDI 298 (412)
Q Consensus 220 -~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~ 298 (412)
++++++.+|++.||++|++|++++++++||+|+++|++++++.++.+++.......++.+|+++.++||++|++.+.++
T Consensus 76 ~~~~~l~~~gv~~iI~~G~aG~l~~~l~~GDiVi~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~ 155 (283)
T 1cb0_A 76 ANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIET 155 (283)
T ss_dssp HHHHHHHHTTCSEEEEEEEEEECSTTSCTTCEECCCEEEEECCSCCCCSCSSSCTTSCSEECCCCSSCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEecceeecCCCCCCCcEEEEHHHhhCcCCCCCcccCCccccccCccCCCCcccCCHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999873222322110002345668889999999999999999
Q ss_pred HHHcCCCcceee-ceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCC
Q psy9643 299 ARDLNMSSIVKE-GVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEAN 377 (412)
Q Consensus 299 a~~~g~~~~~~~-Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s 377 (412)
+++.|++ ++. |+|++++||+|+|++|.++++++|+|+||||++||+++|+++|+||++|++|||+++|. ..+++++
T Consensus 156 a~~~~~~--~~~gG~~~~~sG~~f~t~ae~~~~~~~Ga~~V~ME~aa~a~vA~~~gi~~~~i~~VSd~a~~~-~~~~~~~ 232 (283)
T 1cb0_A 156 AKKLGLR--CHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWK-EHEEAVS 232 (283)
T ss_dssp HHHTTCC--EESCCEEEEECCSSCCCHHHHHHHHHTTCCEEESSHHHHHHHHHHTTCEEEEEEEEEECTTC------CCC
T ss_pred HHHcCCc--eEcceEEEEeeCCcccCHHHHHHHHHcCCeEEeCcHHHHHHHHHHcCCCEEEEEEEEccccCc-CcCCCCC
Confidence 9999998 777 89999999999999999999999999999999999999999999999999999997642 1356799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy9643 378 HEEVIQAGKLRGPMIKSMVTRIVSYIGE 405 (412)
Q Consensus 378 ~~ev~~~~~~~~~~~~~ll~~~i~~l~~ 405 (412)
|+|+++.++++++++.+++.++|++++.
T Consensus 233 ~~e~~~~~~~~~~~~~~lv~~~i~~l~~ 260 (283)
T 1cb0_A 233 VDRVLKTLKENANKAKSLLLTTIPQIGS 260 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999854
No 15
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} SCOP: c.56.2.0 PDB: 3nm5_A* 3nm4_A* 4ffs_A*
Probab=99.93 E-value=5.6e-26 Score=213.60 Aligned_cols=192 Identities=17% Similarity=0.251 Sum_probs=152.2
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
.++.|.++|++|+++++.. +.+++. .++++.+|++.||++|.+|++++++++||+|+++++++++. +
T Consensus 34 ~~~~G~~~g~~v~v~~~G~--------G~~~aa~~~~~l~~~~~~~~iI~~G~aG~l~~~~~~Gdvvi~~~~~~~d~--~ 103 (230)
T 3nm6_B 34 VFHKGVYHNKEIIVAYSKI--------GKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDV--D 103 (230)
T ss_dssp EEEEEEETTEEEEEEECCS--------SHHHHHHHHHHHHHHHCCSEEEEEEEEEECSTTCCTTCEEEEEEEEETTC--C
T ss_pred EEEEEEECCEEEEEEECCC--------CHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCccccEEEEeeEEEccC--C
Confidence 7899999999999886432 344443 36788899999999999999999999999999999998764 1
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCcc-CCHHHHHHHHH-cCCcEEeCch
Q psy9643 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF-ETVAELNMLRI-CGVDAVGMST 342 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~f-eT~AE~~~~~~-~Gad~VgMe~ 342 (412)
.+++ |... ...+.+ +...++|+.|++.+.+++++.+++ ++.|+++ +||+| +|++|.+.+++ +|+++|+||+
T Consensus 104 ~~~~-g~~~-g~~p~~-~~~~~~d~~l~~~~~~~~~~~~~~--~~~G~~~--sgd~f~~~~~~~~~l~~~~ga~~veME~ 176 (230)
T 3nm6_B 104 LSAF-DHPL-GFIPES-AIFIETSGSLNALAKKIANEQHIA--LKEGVIA--SGDQFVHSKERKEFLVSEFKASAVEMEG 176 (230)
T ss_dssp CGGG-TCCT-TCCTTS-CSEEECCHHHHHHHHHHHHHTTCC--EEEEEEE--ECSSCCCCHHHHHHHHHHHCCSEEESSH
T ss_pred Cccc-CCCC-CCCCCC-CccccCCHHHHHHHHHHHHhcCCC--EEEEEEE--ECChhcCCHHHHHHHHHHcCCcEEeccH
Confidence 2222 1110 011222 234677999999999999999998 9999874 89999 89999887765 8999999999
Q ss_pred hHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 343 VHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 343 ~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
++++++|+++|+||++|+.|||+++ ++.+.+++++++.+.+++ .+++.++|++|
T Consensus 177 aa~a~~a~~~gi~~~~ir~IsD~a~----~~~~~~~~~~~~~a~~~~---~~~~~~~l~~l 230 (230)
T 3nm6_B 177 ASVAFVCQKFGVPCCVLRSISDNAD----EKAGMSFDEFLEKSAHTS---AKFLKSMVDEL 230 (230)
T ss_dssp HHHHHHHHHHTCCEEEEEEEEECSS----TTHHHHHHHHHHHHHHHH---HHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCEEEEEEEecCCC----CCCccCHHHHHHHHHHHH---HHHHHHHHHhC
Confidence 9999999999999999999999994 456678888888777665 44667776653
No 16
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} SCOP: c.56.2.1 PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* 4g89_A*
Probab=99.92 E-value=9.9e-25 Score=205.75 Aligned_cols=191 Identities=20% Similarity=0.325 Sum_probs=150.7
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHHH---HHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPI---RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i---~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
.++.|.++|++|++++++. +.+++++ ++++.+|++.||++|.+|++++++++||+|+++++++++. +
T Consensus 34 ~~~~G~~~g~~v~v~~~Gi--------G~~~aa~~~~~li~~~~~~~iI~~G~aG~l~~~~~~GDvvi~~~~~~~d~--~ 103 (234)
T 3o4v_A 34 EIYTGQLNGTEVALLKSGI--------GKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDA--D 103 (234)
T ss_dssp EEEEEEETTEEEEEEECCS--------SHHHHHHHHHHHHHHHCCSEEEEEEEEEECSTTCCTTCEEEEEEEEESSC--B
T ss_pred EEEEEEECCEEEEEEECCC--------CHHHHHHHHHHHHHhCCCCEEEEEEEEeccCCCCCCCcEEEECeEEEccc--C
Confidence 6899999999999887542 3455543 6788899999999999999999999999999999998874 1
Q ss_pred CCCCCCCCCCCCCCCCC--CCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC-CHHHHHHHHHc--CCcEEe
Q psy9643 265 NNPLLGVNEDRFGPRFP--PMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE-TVAELNMLRIC--GVDAVG 339 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~--~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe-T~AE~~~~~~~--Gad~Vg 339 (412)
.+++ |.. .| .++ +..+++|++|++.+.+++++.+++ ++.|++ ++||+|. ++++.+.+++. |+++|+
T Consensus 104 ~~~~-~~~---~g-~~p~~~~~~~~d~~L~~~~~~~~~~~~~~--~~~G~~--~sgd~f~~~~~~~~~l~~~~~ga~~ve 174 (234)
T 3o4v_A 104 VTAF-GYE---YG-QLPGCPAGFKADDKLIAAAEACIAELNLN--AVRGLI--VSGDAFINGSVGLAKIRHNFPQAIAVE 174 (234)
T ss_dssp CGGG-TCC---TT-CCTTSCSSEECCHHHHHHHHHHHHHTTCC--EEEEEE--EECSBCCCSHHHHHHHHHHCTTEEEEE
T ss_pred Cccc-CCc---cC-cCCCCCccccCCHHHHHHHHHHHHhcCCC--eEEeeE--EEcCeeeCCHHHHHHHHHHcCCccEee
Confidence 2333 111 11 122 234688999999999999999998 999986 5899996 57778888775 999999
Q ss_pred CchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9643 340 MSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIG 404 (412)
Q Consensus 340 Me~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~ 404 (412)
||+++++++|+++|+||++|+.|||+++ .+...+++++++.+. ....+++.++|++|+
T Consensus 175 ME~aa~a~va~~~~ip~~~ir~ISD~a~----~~~~~~~~~~~~~aa---~~~a~~v~~~l~~l~ 232 (234)
T 3o4v_A 175 MEATAIAHVCHNFNVPFVVVRAISDVAD----QQSHLSFDEFLAVAA---KQSSLMVESLVQKLA 232 (234)
T ss_dssp SSHHHHHHHHHHHTCCEEEEEEEEECSS----TTHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCCEEEEEEEecCCC----CcchhhHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence 9999999999999999999999999994 344455666655554 445667778887764
No 17
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} SCOP: c.56.2.1
Probab=99.92 E-value=5.6e-25 Score=207.03 Aligned_cols=191 Identities=19% Similarity=0.268 Sum_probs=149.8
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
.++.|.++|++|+++++. ++.+++. .++++.+|++.||++|.+|++++++++||+|+++++++++. +
T Consensus 32 ~~~~G~~~g~~v~v~~~G--------iG~~~aa~~~~~li~~~~~~~iI~~G~aG~l~~~~~~GDvvi~~~~~~~d~--~ 101 (231)
T 3dp9_A 32 TFYSGQIQGVDVVLLQSG--------IGKVSAALGTALLISQYAPDVVINTGSAGGFDASLNVGDVVISSEVRHHDA--D 101 (231)
T ss_dssp EEEEEEETTEEEEEEECC--------SSHHHHHHHHHHHHHHHCCSEEEEEEEEEECSTTCCTTCEEEEEEEEETTC--B
T ss_pred EEEEEEECCEEEEEEECC--------CCHHHHHHHHHHHHHhcCCCEEEEEEEeeccCCCCcCCCEEEEeeEEEccC--C
Confidence 689999999999988643 2345553 25778899999999999999999999999999999998875 2
Q ss_pred CCCCCCCCCCCCC-CCCCCCcccccHHHHHHHHHHHHHc-CCCcceeeceEEEEecCccC-CHHHHHHHH-Hc-CCcEEe
Q psy9643 265 NNPLLGVNEDRFG-PRFPPMNKAYNKQLRAATLDIARDL-NMSSIVKEGVYSVIGGPNFE-TVAELNMLR-IC-GVDAVG 339 (412)
Q Consensus 265 ~~pl~g~~~~~~g-~~~~~~~~~~d~~Lr~~~~~~a~~~-g~~~~~~~Gvy~~~~GP~fe-T~AE~~~~~-~~-Gad~Vg 339 (412)
.+++ |.. .+ ....+...++|+.|++.+.++++++ +++ ++.|++ ++||+|. ++++.+.++ ++ |+++|+
T Consensus 102 ~~~~-g~~---~g~~p~~~~~~~~d~~L~~~~~~~~~~~~~~~--~~~G~~--~sgd~f~~~~~~~~~l~~~~~g~~~ve 173 (231)
T 3dp9_A 102 VTAF-GYE---IGQMAGQPAAFKADEKLMTVAEQALAQLPNTH--AVRGLI--CTGDAFVCTAERQQFIRQHFPSVVAVE 173 (231)
T ss_dssp CGGG-TCC---TTCCTTSCSSEECCHHHHHHHHHHHTTSTTCC--EEEEEE--EECSBCCCSHHHHHHHHHHCTTEEEEE
T ss_pred CCcc-CCc---CCcCCCCCceecCCHHHHHHHHHHHHhcCCCc--eEEEEE--EECCeeeCCHHHHHHHHHhcCCCcEEe
Confidence 2333 111 11 0112345789999999999999998 888 999976 5899996 566777665 57 999999
Q ss_pred CchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 340 MSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 340 Me~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
||+++++++|+++|+||++|+.|||+++ ++.+.+++++++.+.+ ...+++.++|++|
T Consensus 174 ME~aa~a~~a~~~~ip~~~ir~ISD~a~----~~~~~~~~~~~~~aa~---~~a~~v~~~l~~l 230 (231)
T 3dp9_A 174 MEASAIAQTCHQFKVPFVVVRAISDVAD----KESPLSFEEFLPLAAK---SSSAMVLKMVELL 230 (231)
T ss_dssp SSHHHHHHHHHHHTCCEEEEEEEEECSS----TTHHHHHHHHHHHHHH---HHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHcCCCEEEEEEEecCCC----CcccccHHHHHHHHHH---HHHHHHHHHHHhc
Confidence 9999999999999999999999999994 4555667776665544 4566777887765
No 18
>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex, hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB: 2qsu_A 2qtg_A* 2qtt_A* 3lgs_A*
Probab=99.92 E-value=2.9e-25 Score=214.07 Aligned_cols=198 Identities=13% Similarity=0.187 Sum_probs=161.1
Q ss_pred eEEEEeeCCeEEEEec-ceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCC-CCCCCCccHHHHHHHHhhccC
Q psy9643 188 QLVFGLINGIPIMCMQ-GRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGL-NPDYEVGDIMIIKDHINLMGF 262 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~q-gr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l-~~~~~~Gd~vi~~d~i~~~~~ 262 (412)
.++.|.++|++|++++ |+.|.|||++++.++++ .++++.+|++.+|++|.+|++ ++++++||+|+++++++++.
T Consensus 63 ~~~~G~~~g~~Vvv~~~G~~h~~~~~~~G~v~aa~~~~~ll~~~~~~~iI~~G~aGgl~~~~~~~GDvVi~~~~i~~d~- 141 (267)
T 2h8g_A 63 VLYHGVHKDLRINVVCPGRDAALGIDSVGTVPASLITFASIQALKPDIIINAGTCGGFKVKGANIGDVFLVSDVVFHDR- 141 (267)
T ss_dssp EEEEEEETTEEEEEEECCBCTTTCSBCCSHHHHHHHHHHHHHHHCCSEEEEEEEEEECGGGTCCTTCEEEEEEEEESSC-
T ss_pred EEEEEEECCEEEEEEECCCccccccCcccHHHHHHHHHHHHHHcCCCEEEEEEeecccCCCCCCCCCEEEEeeheeccC-
Confidence 7899999999998886 55999999999999994 478888999999999999999 89999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC-CHHHHHHHHHcCCcEEeCc
Q psy9643 263 AGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE-TVAELNMLRICGVDAVGMS 341 (412)
Q Consensus 263 ~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe-T~AE~~~~~~~Gad~VgMe 341 (412)
.++..+.+...++ .++.+ .|+.|++ +++ ++.|+ +++||+|. ++++.++++++|+++|+||
T Consensus 142 --~~~~~~f~~~~~~-~~p~~---~~~~L~~---------~~~--~~~G~--i~sgd~f~~~~~~~~~l~~~ga~~veME 202 (267)
T 2h8g_A 142 --RIPIPMFDLYGVG-LRQAF---STPNLLK---------ELN--LKIGR--LSTGDSLDMSTQDETLIIANDATLKDME 202 (267)
T ss_dssp --CCCSTTHHHHHHC-CEECC---CCHHHHH---------HHC--CEEEE--EEECSCSSCCHHHHHHHHHTTCSEEESS
T ss_pred --CCCccccCccccC-CCCCC---CCHHHHh---------CCC--eEEee--EEECCcccCCHHHHHHHHHcCCeEEecc
Confidence 2222110000001 11111 2677775 244 78997 57999998 5788888999999999999
Q ss_pred hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q psy9643 342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLNS 410 (412)
Q Consensus 342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~~~~~ 410 (412)
+++++++|+++|+||++|+.|||++++ .. .+++++.+.++.+++.+.+++.++|+++....+++
T Consensus 203 ~aa~a~va~~~gip~~~Ir~ISD~a~~----~~-~s~~~~~~~~~~aa~~~~~~l~~~l~~l~~~~~~~ 266 (267)
T 2h8g_A 203 GAAVAYVADLLKIPVVFLKAVTDLVDG----DK-PTAEEFLQNLTVVTAALEGTATKVINFINGRNLSD 266 (267)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEEETTS----SS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHcCCCEEEEEEEEECccc----cc-cchHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999953 22 46889999999999999999999999998776543
No 19
>3bsf_A AT4G34840, nucleosidase; alpha-beta, hydrolase; HET: ADE; 2.90A {Arabidopsis thaliana}
Probab=99.92 E-value=2.5e-25 Score=212.81 Aligned_cols=198 Identities=11% Similarity=0.122 Sum_probs=159.7
Q ss_pred eEEEEeeCCeEEEEe-cceeeeecCCCCccccHHH---HHHHHcCCCEEEEEeccCCC-CCCCCCccHHHHHHHHhhccC
Q psy9643 188 QLVFGLINGIPIMCM-QGRFHYYEGYPLWKCAMPI---RVMKLVGVTHLLATNAAGGL-NPDYEVGDIMIIKDHINLMGF 262 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~-qgr~H~yeg~~~~~v~~~i---~ll~~lGv~~II~~n~~G~l-~~~~~~Gd~vi~~d~i~~~~~ 262 (412)
.++.|.++|.+|+++ +||.|.||+.+++.+++.+ ++++.+|++.+|++|.+|++ ++++++||+|+++++++++.
T Consensus 50 ~~~~G~~~g~~V~v~~~G~~h~~~~~~iG~~~aa~~~~~ll~~~~~~~iI~~G~aGgl~~~~~~~GDvvi~~~~~~~d~- 128 (254)
T 3bsf_A 50 IMFKGMYKDLNINIVCPGKDSTLGVESVGTVPASLVTYASILAIQPDLIINAGTAGGFKAKGACISDVYVVSTVAFHDR- 128 (254)
T ss_dssp EEEEEEETTEEEEEEECCBCTTTCSBCCSHHHHHHHHHHHHHSSCCSEEEEEEEEEECGGGTCCTTCEEEEEEEEESSC-
T ss_pred EEEEEEECCEEEEEEECCCccccccCccCHHHHHHHHHHHHHHcCCCEEEEEEeecCcCCCCCccCCEEEEeeeeeccC-
Confidence 789999999998887 7999999877788888854 78888999999999999999 89999999999999988775
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC-CHHHHHHHHHcCCcEEeCc
Q psy9643 263 AGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE-TVAELNMLRICGVDAVGMS 341 (412)
Q Consensus 263 ~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe-T~AE~~~~~~~Gad~VgMe 341 (412)
.++..+.+...++ .++. .+|+.|++ +++ ++.|+ +++||+|. |+++.++++++|+++|+||
T Consensus 129 --~~~~~~~~~~~~~-~~p~---~~~~~L~~---------~~~--~~~G~--i~sgd~f~~~~~~~~~~~~~g~~~veME 189 (254)
T 3bsf_A 129 --RIPVPVLDIYGVG-MRNT---FPTPNLIK---------ELN--LKVGR--LSTGDSMDMSPHDEESITANDATVKDME 189 (254)
T ss_dssp --CCCSTTHHHHHHC-CEEC---CCCHHHHH---------HTT--CEEEE--EEECSCSSCCHHHHHHHHHTTCSEEESS
T ss_pred --CCCccccCcCCCC-cCCC---CCCHHHHh---------CCC--eEEee--EEECccccCCHHHHHHHHHcCCcEEECc
Confidence 2322110000001 1111 14777774 455 78997 57999998 8888889999999999999
Q ss_pred hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q psy9643 342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLNS 410 (412)
Q Consensus 342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~~~~~ 410 (412)
+++++++|+++|+||++|+.|||++++ ..+ +++++.+.++.+++.+.+++.++|+++...++++
T Consensus 190 ~aa~a~va~~~~ip~~~Ir~ISD~a~~----~~~-s~~~~~~~~~~a~~~~~~~l~~~l~~l~~~~~~~ 253 (254)
T 3bsf_A 190 GAAVAYVADIFKVPTILIKGVTDIVDG----NRP-TSEEFLENLAAVTAKLDESLTKVIDFISGKCLSD 253 (254)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEEETTT----TCC-STTTTTSHHHHHHHHHHHHHHHHHHHHTTCBTTT
T ss_pred HHHHHHHHHHcCCCEEEEEEEEEcCCC----CCc-cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccc
Confidence 999999999999999999999999953 333 5677777788888888999999999998887764
No 20
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1
Probab=99.91 E-value=1.6e-24 Score=204.11 Aligned_cols=193 Identities=19% Similarity=0.253 Sum_probs=147.9
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHHH---HHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPI---RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i---~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
.++.|.++|++|+++++. ++.+++.+ ++++.+|++.||++|.+|++++++++||+|+++++++++. +
T Consensus 35 ~~~~G~~~g~~v~v~~~G--------~G~~~aa~~~~~li~~~~~~~iI~~G~aG~l~~~~~~GDvvv~~~~~~~d~--~ 104 (233)
T 3eei_A 35 SAYEGELAGKRMVLALSG--------IGKVNAAVATAWIIREFAADCVINTGSAGGLGKGLKVGDVVIGTETAHHDV--D 104 (233)
T ss_dssp EEEEEEETTEEEEEEECC--------SSHHHHHHHHHHHHHHHCCSEEEECCEEEECSTTCCTTCEEEEEEEEESSC--B
T ss_pred EEEEEEECCEEEEEEECC--------CCHHHHHHHHHHHHHhCCCCEEEEEEEeecCCCCCccccEEEEceEEEccC--C
Confidence 789999999999988643 24455532 5678899999999999999999999999999999998764 2
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHH-HHHHHH-Hc-CCcEEeCc
Q psy9643 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVA-ELNMLR-IC-GVDAVGMS 341 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~A-E~~~~~-~~-Gad~VgMe 341 (412)
.+++ |..... ....+..+++|+.|++.+.+++++++++ .++.|++ ++||+|.+.+ +.+.++ ++ |+++|+||
T Consensus 105 ~~~~-g~~~~~--~p~~~~~~~~d~~l~~~~~~~~~~~~~~-~~~~G~~--~sgd~f~~~~~~~~~l~~~~~ga~~veME 178 (233)
T 3eei_A 105 VTAF-GYAWGQ--VPQLPARFASDGILIEAAKRAARTFEGA-AVEQGLI--VSGDRFVHSSEGVAEIRKHFPEVKAVEME 178 (233)
T ss_dssp CGGG-TCCTTC--CTTSCSSEECCHHHHHHHHHHHHTCCSS-CEEEEEE--EECSBCCCSHHHHHHHHHHCTTEEEEESS
T ss_pred cccc-CCcCCC--CCCCCccccCCHHHHHHHHHHHHhcCCC-cEEEEEE--EEcceeeCCHHHHHHHHHHcCCceEEech
Confidence 2333 221111 0112334689999999999999998875 4789976 6899997644 455665 57 99999999
Q ss_pred hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
+++++++|+++|+||++|+.|||+++ ++.+.+++++.+.+ +....+++.++|++|
T Consensus 179 ~aa~a~~a~~~gip~~~ir~IsD~a~----~~~~~~~~~~~~~a---a~~~~~~v~~~l~~l 233 (233)
T 3eei_A 179 AAAIAQTCHQLETPFVIIRAVSDSAD----EKADISFDEFLKTA---AANSAKMVAEIVKSL 233 (233)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEECSS----TTHHHHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEEEEEecCCC----CcchhhHHHHHHHH---HHHHHHHHHHHHHhC
Confidence 99999999999999999999999994 34445566655544 445566788887764
No 21
>4g41_A MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, S-adenosylhomocysteine, cleavag; HET: MTA; 1.45A {Streptococcus pyogenes}
Probab=99.91 E-value=3.1e-24 Score=202.52 Aligned_cols=193 Identities=13% Similarity=0.152 Sum_probs=150.9
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
.++.|.++|++|+++++.. +.++++ .+++..+|++.+|++|.+|++++++++||+|+++++++++..
T Consensus 37 ~~~~G~~~g~~Vvv~~~G~--------G~~~aa~~~~~l~~~~~~~~ii~~G~aGgl~~~i~~GDvvi~~~~i~~d~~-- 106 (236)
T 4g41_A 37 TYYTGRFGKHELILVQSGV--------GKVMSAMTVAILVEHFKAQAIINTGSAGAVASHLAIGDVVVADRLVYHDVD-- 106 (236)
T ss_dssp EEEEEEETTEEEEEEECCS--------HHHHHHHHHHHHHHTTCCSEEEEEEEECBCSTTCCTTCEEEEEEEEESSCB--
T ss_pred EEEEEEECCEEEEEEeCCC--------CHHHHHHHHHHHHHhCCCCEEEEEeeecCCCCCCCCCeEEEEeeeEEcCCC--
Confidence 7899999999999886432 333443 367788999999999999999999999999999998887651
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHH-HH-HHHHHc-CCcEEeCc
Q psy9643 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVA-EL-NMLRIC-GVDAVGMS 341 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~A-E~-~~~~~~-Gad~VgMe 341 (412)
.+.+ |... ......+..+++|+.|++.+.+++++.+.+ ++.|++ .+|++|...+ +. ++.+++ |+++||||
T Consensus 107 ~~~~-~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~--~~~G~i--~S~d~~~~~~~~~~~l~~~~~g~~~veME 179 (236)
T 4g41_A 107 ATAF-GYAY--GQMAGQPLYYDCDPQFVAIFKQVLKHEKTN--GQVGLI--ATGDSFVAGQDKIDQIKTAFSNVLAVEME 179 (236)
T ss_dssp CGGG-TCCT--TCCTTSCSSEECCHHHHHHHHHHHHHTTCC--EEEEEE--EECSBCCCCHHHHHHHHHHSTTCCEEESS
T ss_pred CCcc-CCcC--CcCCCCCccccCCHHHHHHHHHHHHhcCCC--eeeceE--EecCCcccCHHHHHHHHHHcCCCeEEech
Confidence 2222 1110 011223456789999999999999999998 999976 4788875433 33 345565 99999999
Q ss_pred hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9643 342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIG 404 (412)
Q Consensus 342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~ 404 (412)
+++++++|+++|+||++|+.|||++ +++.+.+++++++.+.++ ..+++.++|++||
T Consensus 180 ~aa~~~va~~~~~p~~~Ir~ISD~a----d~~~~~~~~~~~~~Aa~~---~a~~v~~~l~~lP 235 (236)
T 4g41_A 180 GAAIAQAAHTAGKPFIVVRAMSDTA----AHDANITFDQFIIEAGKR---SAQILMTFLENLP 235 (236)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESSCT----TCCCCSCHHHHHHHHHHH---HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHcCCCEEEEEEEEeCC----CCcCcccHHHHHHHHHHH---HHHHHHHHHHHcC
Confidence 9999999999999999999999999 456778899988766554 4567888988876
No 22
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus}
Probab=99.91 E-value=3.3e-24 Score=201.27 Aligned_cols=190 Identities=17% Similarity=0.278 Sum_probs=149.0
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHH--H-HHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP--I-RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~--i-~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
.++.|.++|.+|+++++. ++.+++. + ++++.+|++.+|++|.+|++++++++||+|+++++++++. +
T Consensus 33 ~~~~G~~~g~~V~~~~~G--------~G~~~aa~~~~~l~~~~~~~~ii~~G~aG~l~~~~~~Gdvvv~~~~~~~d~--~ 102 (230)
T 3bl6_A 33 KFYTGILKDREVVITQSG--------IGKVNAAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDA--D 102 (230)
T ss_dssp EEEEEEETTEEEEEEECC--------SSHHHHHHHHHHHHHHHCCSEEEECSEEEECSTTCCTTCEEEEEEEEESSC--C
T ss_pred EEEEEEECCEEEEEEECC--------CCHHHHHHHHHHHHHhcCCCEEEEEEEEcCCCCCCccCCEEEECeeEEccC--C
Confidence 788999999999987632 2334443 3 5778899999999999999999999999999999998875 2
Q ss_pred CCCCCCCCCCCCCCCCC--CCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHH-H-HHHHc-CCcEEe
Q psy9643 265 NNPLLGVNEDRFGPRFP--PMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAEL-N-MLRIC-GVDAVG 339 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~--~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~-~-~~~~~-Gad~Vg 339 (412)
.+++ |. ..| .++ +..+++|+.|++.+.+++++.+++ ++.|++ ++||+|.+.+|. + +++++ |+++|+
T Consensus 103 ~~~~-g~---~~g-~~p~~~~~~~~d~~l~~~~~~~~~~~~~~--~~~G~~--~sgd~f~~~~~~~~~l~~~~~g~~~ve 173 (230)
T 3bl6_A 103 ATAF-GY---EYG-QIPQMPVAFQSSKPLIEKVSQVVQQQQLT--AKVGLI--VSGDSFIGSVEQRQKIKKAFPNAMAVE 173 (230)
T ss_dssp CGGG-TC---CTT-CCTTSCSSEECCHHHHHHHHHHHHHTTCC--EEEEEE--EECSSCCCSHHHHHHHHHHCTTEEEEE
T ss_pred Cccc-CC---cCC-cCCCCCccccCCHHHHHHHHHHHHhcCCC--eEEeeE--eEcchhhCCHHHHHHHHHhCCCcEEEE
Confidence 3443 11 111 122 234589999999999999999988 999975 689999998874 3 56778 999999
Q ss_pred CchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 340 MSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 340 Me~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
||+++++++|+++|+|+++|+.|||++. ++.+.+++++.+. ++++..+++.++|++|
T Consensus 174 ME~a~~~~~a~~~~~~~~~ir~IsD~~~----~~~~~~~~~~~~~---aa~~~~~~~~~~l~~~ 230 (230)
T 3bl6_A 174 MEATAIAQTCYQFNVPFVVVRAVSDLAN----GEAEMSFEAFLEK---AAVSSSQTVEALVSQL 230 (230)
T ss_dssp SSHHHHHHHHHHHTCCEEEEEEEEECSS----TTHHHHHHHHHHH---HHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHcCCCEEEEEEeccCCC----CcchhhHHHHHHH---HHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999994 3445566665544 4555677788887653
No 23
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A*
Probab=99.90 E-value=1.2e-23 Score=197.55 Aligned_cols=190 Identities=16% Similarity=0.175 Sum_probs=149.4
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccH--HH-HHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM--PI-RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~--~i-~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
.++.|.++|.+|+++++. .+.+++ ++ .+++.+|++.+|++|.+|++++++++||+|+++++++++. +
T Consensus 32 ~~~~G~~~g~~V~~~~~G--------~G~~~aa~~~~~l~~~~~~~~ii~~G~aG~l~~~~~~Gdvvv~~~~~~~d~--~ 101 (230)
T 1zos_A 32 TYHTGTIASHEVVLVESG--------IGKVMSAMSVAILADHFQVDALINTGSAGAVAEGIAVGDVVIADKLAYHDV--D 101 (230)
T ss_dssp EEEEEEETTEEEEEEECC--------SSHHHHHHHHHHHHHHHCCSEEEEEEEEEECSTTCCTTCEEEEEEEEESSC--B
T ss_pred EEEEEEECCEEEEEEECC--------CCHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccCCEEEEeeeEEcCC--C
Confidence 788999999999988632 233444 33 4457789999999999999999999999999999998875 2
Q ss_pred CCCCCCCCCCCCCCCCC--CCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHH-HHH-HHHc-CCcEEe
Q psy9643 265 NNPLLGVNEDRFGPRFP--PMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE-LNM-LRIC-GVDAVG 339 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~--~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE-~~~-~~~~-Gad~Vg 339 (412)
.+++ |. ..| .++ +..+++|+.|++.+.+++++.+++ ++.|++ ++||+|.+.+| .+. ++++ |+++|+
T Consensus 102 ~~~~-g~---~~g-~~p~~~~~~~~d~~l~~~~~~~~~~~~~~--~~~G~~--~sgd~f~~~~~~~~~l~~~~~g~~~ve 172 (230)
T 1zos_A 102 VTAF-GY---AYG-QMAQQPLYFESDKTFVAQIQESLSQLDQN--WHLGLI--ATGDSFVAGNDKIEAIKSHFPEVLAVE 172 (230)
T ss_dssp CGGG-TC---CTT-CCTTSCSCEECCHHHHHHHHHTSCTTCCS--EEEEEE--EECSBCCCSHHHHHHHHHHCTTEEEEE
T ss_pred CCcc-CC---cCC-CCCCCCCcccCCHHHHHHHHHHHHhcCCc--EEEeeE--EECCcccCCHHHHHHHHHhCCCCcEeh
Confidence 3443 11 111 122 234589999999999999888888 999975 68999999887 444 4678 999999
Q ss_pred CchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 340 MSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 340 Me~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
||+++++++|+++|+|+++|+.|||++.+ +. ++++.+.++.++..+.+++.++|+++
T Consensus 173 ME~aa~~~~a~~~~~~~~~ir~IsD~~~~----~~---~~~~~~~~~~aa~~~~~~~~~~l~~l 229 (230)
T 1zos_A 173 MEGAAIAQAAHTLNLPVLVIRAMSDNANH----EA---NIFFDEFIIEAGRRSAQVLLAFLKAL 229 (230)
T ss_dssp SSHHHHHHHHHHTTCCEEEEEEEEECSST----TH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCEEEEEEeccCCCC----cc---hhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999943 32 34555555666777788899888875
No 24
>1odk_A Purine nucleoside phosphorylase; alpha-beta protein, transferase, riken structural genomics/proteomics initiative, RSGI; 1.9A {Thermus thermophilus} SCOP: c.56.2.1 PDB: 1odj_A* 1odi_A 1odl_A
Probab=99.89 E-value=4.6e-23 Score=194.60 Aligned_cols=183 Identities=16% Similarity=0.152 Sum_probs=143.0
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccH--HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM--PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN 265 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~--~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~ 265 (412)
+++.|.++|++|+++++. ++..++ +++.+..+|++.+|++|.+|++++++++||+|++++++++++ .
T Consensus 47 ~~~~G~~~g~~V~v~~~G--------~G~~~aa~~~~~l~~~~~~~iI~~G~aG~l~~~~~~GDvvv~~~~~~~dg---~ 115 (235)
T 1odk_A 47 WGYTGLYKGVPVSVQTTG--------MGTPSAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELIVAQGAVPLDG---T 115 (235)
T ss_dssp CEEEEEETTEEEEEECCC--------SSHHHHHHHHHHHHHTTCCEEEEEEEEEESSTTSCTTCEEEEEEEEEESH---H
T ss_pred EEEEEEECCEEEEEEecC--------CCHHHHHHHHHHHHHCCCCEEEEEeccccCCCCCCCCCEEEEchhhccCC---C
Confidence 688999999999987632 122333 344444499999999999999999999999999999988765 1
Q ss_pred CCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHH
Q psy9643 266 NPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHE 345 (412)
Q Consensus 266 ~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pE 345 (412)
++...+ +. .+..++|+.|++.+.+++++.+++ ++.|++++.+++.+++.++.++++++|+++||||++++
T Consensus 116 ~~~~~~-----~~---~~~~~~d~~L~~~~~~~~~~~~~~--~~~G~~~s~d~f~~~~~~~~~~~~~~g~~~veME~aa~ 185 (235)
T 1odk_A 116 TRQYLE-----GR---PYAPVPDPEVFRALWRRAEALGYP--HRVGLVASEDAFYATTPEEARAWARYGVLAFEMEASAL 185 (235)
T ss_dssp HHHHHT-----TC---CCCCCCCHHHHHHHHHHHHHTTCC--EEEEEEEEESCTTTCCHHHHHHHHTTTEEEEESSHHHH
T ss_pred CccccC-----CC---CCCCcCCHHHHHHHHHHHHHcCCC--eEEEEEEEeCCCCCCCHHHHHHHHHcCCcEEeccHHHH
Confidence 221110 11 123368999999999999999998 99999877766766788888999999999999999999
Q ss_pred HHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9643 346 VITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSM 395 (412)
Q Consensus 346 a~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~l 395 (412)
+++|+++|+|+++|+.|||++. +.+.++.+++.+..+++.+.+.+.
T Consensus 186 ~~~a~~~gip~~~ir~IsD~~~----~~~~~~~~~~~~~~~~~~~~~l~~ 231 (235)
T 1odk_A 186 FLLGRMRGVRTGAILAVSNRIG----DPELAPPEVLQEGVRRMVEVALEA 231 (235)
T ss_dssp HHHHHHHTCEEEEEEEEEEEC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEEEecCcc----cCccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999994 334588889888777776654433
No 25
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A*
Probab=99.88 E-value=6.2e-23 Score=193.75 Aligned_cols=182 Identities=16% Similarity=0.119 Sum_probs=141.0
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHH--H-HHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP--I-RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~--i-~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
.++.|.++|.+|+++++.. +..++. + ++++.+|++.+|++|.+|++++++++||+|++++++++++
T Consensus 46 ~~~~G~~~g~~V~v~~~G~--------G~~~aa~~~~~l~~~~g~~~iI~~G~aGgl~~~~~~GDvvv~~~~i~~d~--- 114 (235)
T 1z34_A 46 QGYTGTYKGKPISVMGHGM--------GLPSICIYAEELYSTYKVKTIIRVGTCGAIDMDIHTRDIVIFTSAGTNSK--- 114 (235)
T ss_dssp CEEEEEETTEEEEEEECCS--------SHHHHHHHHHHHHHTSCCCEEEEEEEEEECSTTCCTTCEEEEEEEEESCS---
T ss_pred EEEEEEECCEEEEEEecCC--------CHHHHHHHHHHHHHHcCCCEEEEEEccccCCCCCCCCCEEEEcceeccCC---
Confidence 6788999999999875321 223332 3 5677799999999999999999999999999999988765
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC--CHHHHHHHHHcCCcEEeCch
Q psy9643 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE--TVAELNMLRICGVDAVGMST 342 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe--T~AE~~~~~~~Gad~VgMe~ 342 (412)
.++...+ ..++..++|+.|++.+.+++++.+++ ++.|++ ++||+|. +.++.++++++|+++||||+
T Consensus 115 ~~~~~~p--------~~~~~~~~d~~L~~~~~~~~~~~~~~--~~~G~~--~s~d~f~~~~~~~~~~~~~~g~~~veME~ 182 (235)
T 1z34_A 115 INRIRFM--------DHDYPATASFDVVCALVDAAKELNIP--AKVGKG--FSTDLFYNPQTELAQLMNKFHFLAVEMES 182 (235)
T ss_dssp HHHHHTT--------TSCCCCBCCHHHHHHHHHHHHHTTCC--CEEEEE--EECSCSSCSCTHHHHHHHHTTCCEEESSH
T ss_pred ccccccC--------CCCcCccCCHHHHHHHHHHHHHcCCC--eEEEEE--eecCcCcCCcHHHHHHHHHcCceEEechH
Confidence 2221110 11244678999999999999999988 899976 5788886 55677899999999999999
Q ss_pred hHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9643 343 VHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMV 396 (412)
Q Consensus 343 ~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll 396 (412)
++++++|+++|+|+++|+.|||++. +++.++.+++.+..+++.+...+.+
T Consensus 183 aa~~~~a~~~gi~~~~i~~IsD~~~----~~~~~~~~~~~~~~~~~~~~al~~~ 232 (235)
T 1z34_A 183 AGLFPIADLYGARAGCICTVSDHIL----HHEETTAEERQNSFQNMMKIALEAA 232 (235)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEESS----SCCC-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEEEEEEecCC----CCccCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999994 3455888888887777665544433
No 26
>2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI, protein structure initiative UDP, ontario/toronto SGC; 1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A* 3enz_A*
Probab=99.88 E-value=3.9e-23 Score=199.11 Aligned_cols=188 Identities=12% Similarity=0.140 Sum_probs=141.5
Q ss_pred CceeEeeCcCccc--ccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecceeeeecCCCCccccHHHHH
Q psy9643 146 PKIGIICGSGLST--IADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRV 223 (412)
Q Consensus 146 ~~~GIi~GsGl~~--~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~l 223 (412)
.+++|++|++..- +++.+++.... ...+ ..+++.|.++|++|+++++. +.......+++.
T Consensus 39 ~~i~Ii~a~~~e~~~l~~~l~~~~~~-----------~~~~-~~~~~~G~~~g~~V~v~~~G------iG~~~aa~~~~~ 100 (267)
T 2b94_A 39 TPVVLVVGDPGRVDKVKMLCDSYVDL-----------AYNR-EYKSVECTYKGQKFLCVSHG------VGSAGCAICFEE 100 (267)
T ss_dssp CSEEEECSSHHHHHHHHHTSSEEEEC-----------C----CEEEEEEEETTEEEEEEEEC------TTCSCSHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHhccceEe-----------eecC-CeEEEEEEECCEEEEEEeCC------CCHHHHHHHHHH
Confidence 5789999876532 22233332211 1111 12688899999999887532 112222334455
Q ss_pred HHHcCCCEEEEEeccCCCCCC-CCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHc
Q psy9643 224 MKLVGVTHLLATNAAGGLNPD-YEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDL 302 (412)
Q Consensus 224 l~~lGv~~II~~n~~G~l~~~-~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~ 302 (412)
+..+|++.||++|++|+++++ +++||+|++++++++++ .+++.. + ..+..++|+.|++.+.+++++.
T Consensus 101 L~~~g~~~iI~~G~aGgl~~~~l~~GDvVi~~~~i~~dg---~~~~~~-------p--~~~~~~~d~~L~~~l~~~~~~~ 168 (267)
T 2b94_A 101 LMNNGAKVIIRAGSCGSLQPTQMKRGDICICNAAVREDR---VSHLMI-------Y--SDFPAVADFEVYDTLNKVAQEL 168 (267)
T ss_dssp HHHTTCCEEEEEEEEEESCTTTCCTTCEEEEEEEEEESS---THHHHS-------C--TTSCEECCHHHHHHHHHHHHHT
T ss_pred HHHcCCCEEEEeccccccCcccCCCCCEEEEhhhcccCC---CCcccc-------C--CCcCCCCCHHHHHHHHHHHHHc
Confidence 558999999999999999999 99999999999998875 222111 1 1234589999999999999999
Q ss_pred CCCcceeeceEEEEecCccC--C--HHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643 303 NMSSIVKEGVYSVIGGPNFE--T--VAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV 367 (412)
Q Consensus 303 g~~~~~~~Gvy~~~~GP~fe--T--~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~ 367 (412)
+++ ++.|++ ++||+|. + +++.++++++|+++||||+++++++|+++|+||++|+.|||++.
T Consensus 169 ~~~--~~~G~i--~sgd~f~~~~~~~~~~~~~~~~ga~~veME~aa~a~va~~~gip~~~Ir~IsD~~~ 233 (267)
T 2b94_A 169 EVP--VFNGIS--LSSDLYYPHKIIPTRLEDYSKANVAVVEMEVATLMVMGTLRKVKTGGIFIVDGCPL 233 (267)
T ss_dssp TCC--CEEEEE--EEESSHHHHCCCCTTHHHHHHTTCCEEESSHHHHHHHHHHHTCEEEEEEEEEECGG
T ss_pred CCC--eEEEEE--eeeCccccCCcchHHHHHHHHcCCeEEeCcHHHHHHHHHHcCCcEEEEEEEEcccc
Confidence 998 899977 4799997 4 45778899999999999999999999999999999999999984
No 27
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein, transferase; 1.60A {Sulfolobus solfataricus} SCOP: c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A 1je1_A* 1jp7_A 1jpv_A
Probab=99.88 E-value=4.4e-23 Score=194.76 Aligned_cols=180 Identities=12% Similarity=0.081 Sum_probs=137.6
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccH--HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM--PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN 265 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~--~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~ 265 (412)
.++.|.++|++|+++++.. +..++ +++.+..+|++.+|++|.+|++++++++||+|++++++++++ .
T Consensus 46 ~~~~G~~~g~~V~v~~~G~--------G~~~aa~~~~~l~~~~~~~iI~~G~aGgl~~~~~~GDvvi~~~~~~~d~---~ 114 (236)
T 1je0_A 46 LVYTGKYNGETVSIATHGI--------GGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQG---G 114 (236)
T ss_dssp CEEEEEETTEEEEEEECCS--------SHHHHHHHHHHHHHTTCCEEEEEEEEEECSTTCCTTCEEEEEEEEBCCS---H
T ss_pred EEEEEEECCEEEEEEecCC--------CHhHHHHHHHHHHHcCCCEEEEEeccccCCCCCCCCCEEEEhhhccCCC---C
Confidence 6889999999999876321 22333 345555599999999999999999999999999999988876 2
Q ss_pred CCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCcc--CCHHHHHHHHHcCCcEEeCchh
Q psy9643 266 NPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF--ETVAELNMLRICGVDAVGMSTV 343 (412)
Q Consensus 266 ~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~f--eT~AE~~~~~~~Gad~VgMe~~ 343 (412)
+ |.+. .+..+++..++|+.|++.+.+++++.+++ ++.|+++ +||+| +++++.++++++|+++||||++
T Consensus 115 ~-~~~~-----~p~~~~~~~~~d~~l~~~~~~~~~~~~~~--~~~G~~~--s~d~f~~~~~~~~~~~~~~g~~~veME~a 184 (236)
T 1je0_A 115 L-FYQY-----LRDNACVASTPDFELTNKLVTSFSKRNLK--YYVGNVF--SSDAFYAEDEEFVKKWSSRGNIAVEMECA 184 (236)
T ss_dssp H-HHHH-----HSSCCBCCCCCCHHHHHHHHHHHHHTTCC--EEEEEEE--ECSCTTCCCTTHHHHHHTTTEEEEESSHH
T ss_pred c-cccc-----cCCCCCCCCCCCHHHHHHHHHHHHHcCCC--eEEEEEE--ecCcCccCCHHHHHHHHHcCCeEEeccHH
Confidence 2 1110 01111234578999999999999999998 8999875 67777 6778888999999999999999
Q ss_pred HHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9643 344 HEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPM 391 (412)
Q Consensus 344 pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~ 391 (412)
+++++|+++|+|+++|+.|||++.. ..+.++++++.+..+++.+.
T Consensus 185 a~~~~a~~~gi~~~~ir~IsD~~~~---~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1je0_A 185 TLFTLSKVKGWKSATVLVVSDNLAK---GGIWITKEELEKSVMDGAKA 229 (236)
T ss_dssp HHHHHHHHHTCEEEEEEEEEEECC-----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEEEEEccccc---CCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999942 14568888887766665443
No 28
>1vhw_A Purine nucleoside phosphorylase; structural genomics, transferase; HET: ADN; 1.54A {Vibrio cholerae} SCOP: c.56.2.1 PDB: 1vhj_A* 3of3_A* 3occ_A* 1pw7_A* 1pr1_A* 1pr2_A* 1pr4_A* 1pr5_A* 1pr0_A* 1pr6_A* 3onv_A 1pk7_A* 1k9s_A* 1pke_A* 1pk9_A 3ooe_A 3ooh_A 1ecp_A 1a69_A 1oty_A* ...
Probab=99.88 E-value=1.1e-22 Score=194.38 Aligned_cols=185 Identities=15% Similarity=0.081 Sum_probs=146.5
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccH--HH-HHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM--PI-RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~--~i-~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~ 264 (412)
.++.|.++|.+|+++++.. +..++ ++ ++++.+|++.||++|++|++++++++||+|+++++++..+
T Consensus 49 ~~~~G~~~g~~V~v~~~G~--------G~~~aa~~~~~l~~~~g~~~iI~~G~aGgl~~~~~~GDvVi~~~~i~d~g--- 117 (253)
T 1vhw_A 49 FGYTGTYKGRRISVMGHGM--------GIPSCSIYVTELIKDYGVKKIIRVGSCGAVNEGIKVRDVVIGMGACTDSK--- 117 (253)
T ss_dssp CEEEEEETTEEEEEECCCS--------SHHHHHHHHHHHHHHHCCCEEEEEEEEEECSTTSCTTCEEEEEEEEESCS---
T ss_pred EEEEEEECCEEEEEEeCCC--------CHHHHHHHHHHHHHHcCCCEEEEEEeccCCCCCCCCCCEEEEcceEECCC---
Confidence 5788999999999886421 22333 23 5677899999999999999999999999999999884322
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCcc--CCHHHHHHHHHcCCcEEeCch
Q psy9643 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF--ETVAELNMLRICGVDAVGMST 342 (412)
Q Consensus 265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~f--eT~AE~~~~~~~Gad~VgMe~ 342 (412)
.++...+ ..+..+++|+.|++.+.+++++.+++ ++.|+++ +||+| +++++.++++++|+++||||+
T Consensus 118 ~~~~~~p--------~~~~~~~~d~~L~~~l~~~~~~~~~~--~~~G~i~--s~d~f~~~~~~~~~~~~~~g~~~veME~ 185 (253)
T 1vhw_A 118 VNRIRFK--------DHDFAAIADYKMVKAAEEAAKARGID--VKVGNLF--SAELFYTPDPSMFDVMDKYGIVGVEMEA 185 (253)
T ss_dssp HHHHHTT--------TSBCCCBCCHHHHHHHHHHHHHTTCC--CEEEEEE--ECSCSSCSCTTHHHHHHHTTCCEEESSH
T ss_pred CcccccC--------CCcccccCCHHHHHHHHHHHHHcCCC--eEEEEEE--EeCccccCcHHHHHHHHHcCCcEEechH
Confidence 1221100 11234678999999999999999998 9999875 67777 566778899999999999999
Q ss_pred hHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9643 343 VHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRI 399 (412)
Q Consensus 343 ~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~ 399 (412)
++++++|+++|+|+++|+.|||++. +.+.++.+++.+..+++.+.+.+.+.++
T Consensus 186 aa~~~~a~~~gi~~~~I~~IsD~~~----~~~~~~~~e~~~~~~~~~~~ale~~~~~ 238 (253)
T 1vhw_A 186 AGIYGVAAEYGAKALAICTVSDHIK----TGEQTTSEERQNTFNEMIEIALDSVLIG 238 (253)
T ss_dssp HHHHHHHHHHTCEEEEEEEEEEETT----TCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEEEccCC----CCccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999994 4567899998888877776665555444
No 29
>3uaw_A PNP, purine nucleoside phosphorylase DEOD-type; necleoside phosphorylase I (NP-I) family, transferase; HET: ADN GOL; 1.20A {Bacillus cereus} PDB: 2ac7_A 3uav_A* 3uax_A* 1xe3_A 3uay_A* 3uaz_A* 4d8y_A 4d8x_A 4d8v_A 4d98_A 4d9h_A* 4da0_A* 4da6_A* 4da7_A* 4da8_A* 4dab_A* 4dae_A* 4dan_A* 4dao_A* 4dar_A*
Probab=99.88 E-value=1e-22 Score=192.68 Aligned_cols=180 Identities=18% Similarity=0.142 Sum_probs=138.8
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP 267 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p 267 (412)
.+++|.++|++|+++++.... ++...+..++++.+|++.||++|++|++++++++||+|+++++++..+. ++
T Consensus 46 ~~~~G~~~g~~v~v~~~G~G~-----~~aa~~~~~l~~~~g~~~iI~~G~aGgl~~~~~~GDvVi~~~~i~d~g~---~~ 117 (235)
T 3uaw_A 46 LGFTGTYKGKRVSVQGTGMGV-----PSISIYVNELIQSYGVKNLIRVGTCGAIQKDVKVRDVIIAMTACTDSNM---NR 117 (235)
T ss_dssp CEEEEEETTEEEEEECCCSSH-----HHHHHHHHHHHHHHCCCEEEEEEEEEECSTTSCTTCEEEEEEEEESCSH---HH
T ss_pred EEEEEEECCEEEEEEeCCCCH-----HHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCcEEEEChhhccCCC---Cc
Confidence 578899999999998644321 1111112357778999999999999999999999999999988753321 10
Q ss_pred CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCcc--CCHHHHHHHHHcCCcEEeCchhHH
Q psy9643 268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF--ETVAELNMLRICGVDAVGMSTVHE 345 (412)
Q Consensus 268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~f--eT~AE~~~~~~~Gad~VgMe~~pE 345 (412)
..+. ..++..++|+.|++.+.+++++.|++ ++.|++ ++||+| +++++.++++++|+++||||++++
T Consensus 118 ------~~~~--~~~~~~~~d~~L~~~l~~~a~~~g~~--~~~G~~--~s~d~f~~~~~~~~~~~~~~g~~~veME~aa~ 185 (235)
T 3uaw_A 118 ------LTFP--GFDFAPAANFDLLKKAYDAGTEKGLH--VRVGNV--LTADVFYRESMDMVKKLGDYGVLAVEMETTAL 185 (235)
T ss_dssp ------HHST--TCCCCCBCCHHHHHHHHHHHHHHTCC--EEEEEE--EECSCSSCSCCHHHHHHHHTTCCEEESSHHHH
T ss_pred ------cccC--CCcccccCCHHHHHHHHHHHHHcCCC--eEEEEE--EEcCcCccCCHHHHHHHHHcCCcEEEccHHHH
Confidence 0011 02334568999999999999999998 999987 478888 677788899999999999999999
Q ss_pred HHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9643 346 VITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPM 391 (412)
Q Consensus 346 a~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~ 391 (412)
+++|+++|+|+++|++|||++. .++..+.+|....+.++.+.
T Consensus 186 ~~va~~~gi~~~~i~~ISD~~~----~~e~~~~~e~~~~~~~~~~~ 227 (235)
T 3uaw_A 186 YTLAAKYGVNALSVLTVSDHIF----TGEETTSEERQTTFNEMIEI 227 (235)
T ss_dssp HHHHHHHTCEEEEEEEEEEETT----TCCBCCTGGGHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEEEecccC----CCCcCChHHHHHHHHHHHHH
Confidence 9999999999999999999984 34445666665555555443
No 30
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica} SCOP: c.56.2.0 PDB: 3tl6_A*
Probab=99.87 E-value=1.2e-22 Score=192.97 Aligned_cols=180 Identities=16% Similarity=0.114 Sum_probs=140.9
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP 267 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p 267 (412)
..++|.++|++|+++++.... |+...+.-++++.+|++.||++|+||++++++++||+|+++++++..++ ++
T Consensus 55 ~~~tG~~~g~~V~v~~~G~G~-----~saai~~~eLi~~~gv~~iI~~GtaGgl~~~~~~GDvVi~~~~i~~~~~---~~ 126 (242)
T 3u40_A 55 VGYTGYYKGVKLSVQAHGMGM-----PSIGIYAYELFNFYGVKRIIRIGSAGAFDESLKLGDIVIGMGACYDSNF---ER 126 (242)
T ss_dssp CEEEEEETTEEEEEEECCSSH-----HHHHHHHHHHHHHSCCCEEEEEEEEEECSTTCCTTCEEEEEEEEESCSS---SG
T ss_pred EEEEEEECCEEEEEEeCCCCH-----HHHHHHHHHHHHHcCCCEEEEEEeeeCCCCCCCCCCEEEecceeecCCc---cc
Confidence 578899999999998643211 1221122356678999999999999999999999999999998875542 11
Q ss_pred CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCcc-CCHHHHHHHHHcCCcEEeCchhHHH
Q psy9643 268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF-ETVAELNMLRICGVDAVGMSTVHEV 346 (412)
Q Consensus 268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~f-eT~AE~~~~~~~Gad~VgMe~~pEa 346 (412)
. .+.+ .++..++|+.|++.+.+++++.|++ ++.|+++ ++|.| +++++.++++++|+++||||+++++
T Consensus 127 ~------~~~~--~~~~~~~d~~L~~~l~~~a~~~g~~--~~~G~i~--s~d~fy~~~~~~~~~~~~g~~~veMEsaal~ 194 (242)
T 3u40_A 127 Q------YDIP--GKYSCIADFQLCREAVDAAEKLGYR--YKVGNIY--SANYFYDDGDHSGAWKKMGVLAVEMEAAALY 194 (242)
T ss_dssp G------GTCS--SBCCEECCHHHHHHHHHHHHHTTCC--EEEEEEE--ECSCSSCSSCCCHHHHHTTCCEEESSHHHHH
T ss_pred c------ccCC--CcccccCCHHHHHHHHHHHHHcCCc--eEEeEEE--EeCCCcCCHHHHHHHHHcCCcEEEchHHHHH
Confidence 0 0100 1234578999999999999999998 9999886 56665 7888888999999999999999999
Q ss_pred HHHHHcCCcEEEEEeeec-cCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9643 347 ITAHHCGMTVTAFSLITN-KCVTDYDDHAEANHEEVIQAGKLRGPM 391 (412)
Q Consensus 347 ~~A~~~Gi~~~~i~~VSd-~a~~~~~~~~~~s~~ev~~~~~~~~~~ 391 (412)
++|+++|+|+++|++||| .. ...+.++.+|..+.+.++.+.
T Consensus 195 ~va~~~gi~~~~i~~ISD~~~----~~~e~~~~~e~~~~~~~~~~~ 236 (242)
T 3u40_A 195 MIAARARKQALCMLTISDLCY----GSGEKMTAEERRTKFTQMMEV 236 (242)
T ss_dssp HHHHHHTCEEEEEEEEEEESS----TTCCBCCHHHHHHTTHHHHHH
T ss_pred HHHHHcCCCEEEEEEEEcCcc----cCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999 65 234578888877777666543
No 31
>1ybf_A AMP nucleosidase; structural genomics, protein structure initiative, PSI, NEW research center for structural genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron} SCOP: c.56.2.1
Probab=99.87 E-value=3e-22 Score=193.03 Aligned_cols=200 Identities=11% Similarity=0.067 Sum_probs=148.4
Q ss_pred HHHHHHHHhhhcCCC----CceeEeeCcCcc--cccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecc
Q psy9643 131 IQSIAKFLLDSISIR----PKIGIICGSGLS--TIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQG 204 (412)
Q Consensus 131 ~~~~~~~i~~~~~~e----~~~GIi~GsGl~--~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qg 204 (412)
.+-+.+|+.-.+... +++.|++|++.. .+++.+++. . . ||..++. .++|++|+++++
T Consensus 7 ~~~~~~~~~~h~~~~~~~~~~~vii~g~p~~~~~ia~~~~~~---------~---~---~~~~~~~--~~~g~~V~v~~~ 69 (268)
T 1ybf_A 7 QEIVENWLPRYTQRQLIDFEPYILLTNFSHYLHVFAEHYGVP---------I---V---GEHTSMP--NASAEGVTLINF 69 (268)
T ss_dssp HHHHHHHHHHHSSCCTTTSCSEEEEESCHHHHHHHHHHHTCC---------C---B---TTTSSSC--BCCCSSEEEEEC
T ss_pred HHHhcCCeeeeeCcChHHCCCEEEEcCCHHHHHHHHHhcccc---------E---E---ccCCcee--eECCeEEEEEEC
Confidence 344555655555543 589999988431 122222111 0 1 3433444 678999888864
Q ss_pred eeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCc
Q psy9643 205 RFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMN 284 (412)
Q Consensus 205 r~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~ 284 (412)
.... |+. .++++++..+|++.||.+|+||++++++++||+|++++++++++ .+++. ....+ .
T Consensus 70 G~G~-----~~a-a~~~~~l~~~gv~~iI~~GtaGgl~~~i~~GDvVi~~~~i~~d~---~~~~~------~~~~~---p 131 (268)
T 1ybf_A 70 GMGS-----ANA-ATIMDLLWAIHPKAVIFLGKCGGLKLENALGDYLLPIAAIRGEG---TSNDY------LPEEV---P 131 (268)
T ss_dssp CSCH-----HHH-HHHHHHTTTTCCSEEEEEEEECCSSCTTCTTCEEEEEEEEECSS---TGGGT------SCTTS---C
T ss_pred CCCH-----HHH-HHHHHHHHHcCCCEEEEEEeeecCCCCCCCCcEEEEhhheecCC---Ccccc------cCCcc---C
Confidence 4321 222 44578889999999999999999999999999999999998776 22221 11122 2
Q ss_pred ccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHH-HHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeee
Q psy9643 285 KAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE-LNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLIT 363 (412)
Q Consensus 285 ~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE-~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VS 363 (412)
.++|++|++.+.+++++++++ ++.|++++.+++.++|++| .++|+++|+++||||+++++++|+++|+|+++|++||
T Consensus 132 ~~~~~~l~~~l~~~a~~~~~~--~~~G~~~s~d~f~~e~~~e~~~~l~~~g~~~veMEsaal~~~a~~~gv~~~~i~~Vs 209 (268)
T 1ybf_A 132 SLPSFSVLRAISSAIQNKGKD--YWTGTVYTTNRRVWEYDEKFKDYLRSTHASGVDMETATLMTVGFANKIPMGALLLIS 209 (268)
T ss_dssp BCCCHHHHHHHHHHHHTTTCC--EEEEEEEECSCCCCTTCHHHHHHHHHTTCSEEESSHHHHHHHHHHTTCCEEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEEEEEeCCCccCCCHHHHHHHHHcCCeEEecCHHHHHHHHHHcCCCEEEEEEEE
Confidence 367899999999999999998 8999987666666778888 5788889999999999999999999999999999999
Q ss_pred ccCC
Q psy9643 364 NKCV 367 (412)
Q Consensus 364 d~a~ 367 (412)
|++.
T Consensus 210 D~~~ 213 (268)
T 1ybf_A 210 DRPM 213 (268)
T ss_dssp SCSS
T ss_pred cCCC
Confidence 9985
No 32
>3phc_A Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.00A {Plasmodium falciparum} PDB: 1q1g_A* 1nw4_A* 3fow_A*
Probab=99.86 E-value=2.6e-22 Score=194.02 Aligned_cols=160 Identities=15% Similarity=0.152 Sum_probs=131.5
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC-CCCccHHHHHHHHhhccCCCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD-YEVGDIMIIKDHINLMGFAGNN 266 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~-~~~Gd~vi~~d~i~~~~~~~~~ 266 (412)
..++|.++|++|+++++.. ........++.+..+|++.||++|+||+++++ +++||+|++++++++++ .+
T Consensus 49 ~~~tG~~~G~~V~v~~~Gi------G~psaai~~~eL~~~gv~~iI~~GtaGgL~~~~i~~GDiVI~~~ai~~dg---~~ 119 (275)
T 3phc_A 49 KSVECHYKGQKFLCVSHGV------GSAGCAVCFEELCQNGAKVIIRAGSCGSLQPDLIKRGDICICNAAVREDR---VS 119 (275)
T ss_dssp EEEEEEETTEEEEEEECCS------SHHHHHHHHHHHHTTTCCEEEEEEEEEESCTTTCCTTCEEEEEEEEEESS---HH
T ss_pred EEEEEEECCEEEEEEECCC------ChHHHHHHHHHHHHCCCCEEEEeeeecCcccccCCCCcEEEEhheeccCC---cc
Confidence 5788999999999987432 12222223455566999999999999999999 99999999999998765 22
Q ss_pred CCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHH--HHHHHHcCCcEEeCchhH
Q psy9643 267 PLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE--LNMLRICGVDAVGMSTVH 344 (412)
Q Consensus 267 pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE--~~~~~~~Gad~VgMe~~p 344 (412)
+.. .+. .+..++|++|++.+.++++++|++ ++.|++++.++|.+++.++ .++++++|+++||||+++
T Consensus 120 ~~y------~~~---~~p~~~d~~L~~~l~~~a~~~g~~--~~~G~v~s~D~Fy~~~~~~~k~~~~~~~Ga~aVEMEsaa 188 (275)
T 3phc_A 120 HLL------IHG---DFPAVGDFDVYDTLNKCAQELNVP--VFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEMELAT 188 (275)
T ss_dssp HHH------SCT---TSCEECCHHHHHHHHHHHHHTTCC--CEEEEEEEESCSSCCSSSCCSHHHHHHTTCCEEESSHHH
T ss_pred ccc------CCC---CcCCcCCHHHHHHHHHHHHHcCCC--eEEEEEEEeCCCccCchhhHHHHHHHHcCCEEEECcHHH
Confidence 211 111 233578999999999999999998 9999999888888888877 588999999999999999
Q ss_pred HHHHHHHcCCcEEEEEeeeccCC
Q psy9643 345 EVITAHHCGMTVTAFSLITNKCV 367 (412)
Q Consensus 345 Ea~~A~~~Gi~~~~i~~VSd~a~ 367 (412)
++++|+++|+|+++|++|+|...
T Consensus 189 l~~vA~~~gi~~~~I~~V~~~~~ 211 (275)
T 3phc_A 189 LMVIGTLRKVKTGGILIVDGCPF 211 (275)
T ss_dssp HHHHHHHTTCEEEEEEEEEECGG
T ss_pred HHHHHHHcCCCEEEEEEEECCcc
Confidence 99999999999999999988753
No 33
>3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} SCOP: c.56.2.1 PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A* 3nsr_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A ...
Probab=99.86 E-value=6.1e-22 Score=189.36 Aligned_cols=158 Identities=13% Similarity=0.226 Sum_probs=128.8
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP 267 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p 267 (412)
.++.|.++|++|+++++.. .......+++.++.+|++.+|++|.+|++++++++||+|++++++++++ .++
T Consensus 51 ~~~~G~~~g~~V~~~~~G~------G~~~aa~~~~~l~~~g~~~ii~~G~aGgl~~~~~~Gdvvi~~~~i~~dg---~~~ 121 (253)
T 3ddo_A 51 TSWRAELDGKAVIVCSTGI------GGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDG---ASL 121 (253)
T ss_dssp EEEEEEETTEEEEEECCCS------SHHHHHHHHHHHHHTTCCEEEEEEEECCCSTTCCTTCEEEEEEEEEESS---GGG
T ss_pred EEEEEEECCEEEEEEeCCC------ChHHHHHHHHHHHHcCCCEEEEEEeeccCCCCCCCCeEEEechheeCCC---ccc
Confidence 5689999999999986432 1222233456668999999999999999999999999999999999875 221
Q ss_pred CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC----------------CHHHHHHHH
Q psy9643 268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE----------------TVAELNMLR 331 (412)
Q Consensus 268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe----------------T~AE~~~~~ 331 (412)
. +.+ ..+..++|++|++.+.++++++|++ ++.|+++ +||+|. +++|.++++
T Consensus 122 ~-------y~~--~~~p~~~d~~l~~~l~~~a~~~~~~--~~~G~~~--s~d~F~~~~~r~~~~~~~i~~~~~~~~~~~~ 188 (253)
T 3ddo_A 122 H-------FAP--MEFPAVADFACTTALVEAAKSIGAT--THVGVTA--SSDTFYPGQERYDTYSGRVVRRFKGSMEEWQ 188 (253)
T ss_dssp G-------TSC--TTSCEECCHHHHHHHHHHHHHTTCC--EEEEEEE--EESCSSGGGTCCCSSSCCCCGGGTTHHHHHH
T ss_pred c-------cCC--CccCCcCCHHHHHHHHHHHHHCCCC--EEEEEEE--EcCcccCCcccccccccchhhhHHHHHHHHH
Confidence 1 111 1233468999999999999999998 9999874 799994 357888999
Q ss_pred HcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643 332 ICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV 367 (412)
Q Consensus 332 ~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~ 367 (412)
++|+++||||+++++++|+++|+|+++|+++++.-.
T Consensus 189 ~~ga~aveME~aa~a~va~~~gi~~~~i~~v~~~R~ 224 (253)
T 3ddo_A 189 AMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRT 224 (253)
T ss_dssp HTTCCEEESSHHHHHHHHHTTTCEEEEEEEECCCTT
T ss_pred HCCceEEeccHHHHHHHHHHcCCcEEEEEEEEEecc
Confidence 999999999999999999999999999998887753
No 34
>3qpb_A Uridine phosphorylase; hexamer, NP-I superfamily, pyrimidine salvage pathway, uridi phosphorylase, transition state; HET: R1P; 1.82A {Streptococcus pyogenes serotype M6}
Probab=99.85 E-value=6.7e-22 Score=191.88 Aligned_cols=161 Identities=18% Similarity=0.279 Sum_probs=129.8
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP 267 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p 267 (412)
..++|+++|++|+++++.. .......+++.+..+|++.||++|+||++++++++||+|++++++++++ .++
T Consensus 77 ~~~tG~~~g~~V~v~~~G~------G~~~aa~~~~~L~~~g~~~iI~~G~aGgl~~~~~~GDvVi~~~ai~~dg---~~~ 147 (282)
T 3qpb_A 77 VTYTGTLNGEKVSVTSTGI------GGPSASIAMEELKLCGADTFIRVGTCGGIELDVKGGDIVIATGAIRMEG---TSK 147 (282)
T ss_dssp EEEEEEETTEEEEEECCCS------SHHHHHHHHHHHHHTTCCEEEEEEEEEECSTTCCTTCEEEEEEEEEESS---TGG
T ss_pred eEEEEEECCEEEEEEeCCC------CHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCcEEEeeeeeecCC---ccc
Confidence 5789999999999886321 1222223456666699999999999999999999999999999998875 232
Q ss_pred CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEe-----------cCccCCHHHHHHHHHcCCc
Q psy9643 268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIG-----------GPNFETVAELNMLRICGVD 336 (412)
Q Consensus 268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~-----------GP~feT~AE~~~~~~~Gad 336 (412)
+.. . ..+...+|+.|++.+.++++++|++ ++.|++++.+ ||+|+|++|.++|+++|++
T Consensus 148 ~y~------~---~~~p~~~d~~L~~~l~~~a~~~g~~--~~~G~~~s~D~Fy~q~~~~~~~~~~e~~~~~~~~~~~Ga~ 216 (282)
T 3qpb_A 148 EYA------P---IEFPAVADLEVTNALVNAAKKLGYT--SHAGVVQCKDAFYGQHEPERMPVSYELLNKWEAWKRLGTK 216 (282)
T ss_dssp GTS------C---TTSCEECCHHHHHHHHHHHHHHTCC--EEEEEEEEESCHHHHHCGGGSTTHHHHHHHHHHHHHTTCC
T ss_pred ccC------C---CccCCCCCHHHHHHHHHHHHHcCCC--EEEEEEEEecceecccccccccccHhHHHHHHHHHHcCCe
Confidence 211 1 1233458999999999999999998 9999887532 4556788888999999999
Q ss_pred EEeCchhHHHHHHHHcCCcEEE-EEeeeccCCC
Q psy9643 337 AVGMSTVHEVITAHHCGMTVTA-FSLITNKCVT 368 (412)
Q Consensus 337 ~VgMe~~pEa~~A~~~Gi~~~~-i~~VSd~a~~ 368 (412)
+||||+++++++|+++|+|+++ +++|||.+.+
T Consensus 217 aVEMEsaala~vA~~~gi~~~~il~visn~~~~ 249 (282)
T 3qpb_A 217 ASEMESAALFVAASHLGVRCGSDFLVVGNQERN 249 (282)
T ss_dssp EECSSHHHHHHHHHHHTCEEEEEEEEEEEHHHH
T ss_pred EEeccHHHHHHHHHHcCCCEEEEEEEEEccccc
Confidence 9999999999999999999999 7799999853
No 35
>3mb8_A Purine nucleoside phosphorylase; PNP, immucillin H, IMMH, TR; HET: IMH; 1.90A {Toxoplasma gondii}
Probab=99.83 E-value=7e-21 Score=184.37 Aligned_cols=192 Identities=11% Similarity=0.129 Sum_probs=140.9
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC-CCCccHHHHHHHHhhccCCCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD-YEVGDIMIIKDHINLMGFAGNN 266 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~-~~~Gd~vi~~d~i~~~~~~~~~ 266 (412)
..+.|.++|++|+++++... .......++.+..+|++.||.+|+||+++++ +++||+|++++++++++ .+
T Consensus 53 ~~ytG~~~G~~V~v~~~GiG------~psaai~~~eLi~~gv~~iIriGtaGgL~~~~l~~GDiVI~~~ai~~dg---~~ 123 (279)
T 3mb8_A 53 RSFRVVYDSQPITVISHGIG------CPGTSIAIEELAYLGAKVIIRAGTCGSLKPKTLKQGDVCVTYAAVNETG---LI 123 (279)
T ss_dssp EEEEEEETTEEEEEEECCSS------HHHHHHHHHHHHHTTCCEEEEEEEEEESCTTTSCTTCEEEEEEEEECCH---HH
T ss_pred EEEEEEECCEEEEEEECCCC------HHHHHHHHHHHHHCCCCEEEEeecccCcCcccCCCCCEEEeeeeEcCCC---Cc
Confidence 56789999999999874321 2222223455556999999999999999999 99999999999988765 22
Q ss_pred CCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHH--HHHHHHcCCcEEeCchhH
Q psy9643 267 PLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE--LNMLRICGVDAVGMSTVH 344 (412)
Q Consensus 267 pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE--~~~~~~~Gad~VgMe~~p 344 (412)
+.. .. ..+..++|++|++.+.++++++|++ ++.|++++.+++..++.++ .++++++|++ |+||+++
T Consensus 124 ~~y------~~---~~~p~~~d~~L~~~l~~~a~~~g~~--~~~G~v~S~D~Fy~e~~~~~k~~~~~~~Ga~-VEMEsaa 191 (279)
T 3mb8_A 124 SNI------LP---EGFPCVATPHVYQALMDAAKELGIE--AASGIGVTQDYFYQNGILPSKLEMYSKCCDV-IDMEMSG 191 (279)
T ss_dssp HHH------SC---TTCCEECCHHHHHHHHHHHHHHTCC--CEEEEEEECSCSCCCCSSCCCHHHHHTTCSE-EESSHHH
T ss_pred ccc------CC---CccCCcCCHHHHHHHHHHHHHcCCC--eEEEEEEEECCCccCchHhHHHHHHHHcCCE-EecCHHH
Confidence 111 11 1234578999999999999999998 9999988766666677777 6889999999 9999999
Q ss_pred HHHHHHHcCCcEEEEEeeeccCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643 345 EVITAHHCGMTVTAFSLITNKCVTDYDDHAEA-NHEEVIQAGKLRGPMIKSMVTRIVS 401 (412)
Q Consensus 345 Ea~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~-s~~ev~~~~~~~~~~~~~ll~~~i~ 401 (412)
++++|+.+|+|+++|++|||..... ...... +.+.+.+...++.....+.+..+++
T Consensus 192 la~vA~~~gv~~~~I~~VSd~~~~~-~~~~~~~~~~~~~~~~~~~i~ialea~~~L~~ 248 (279)
T 3mb8_A 192 VLGLCQARGIATCGILAVDGSPLQW-DEGDYDATGVKATTGKENMVKITLKACANLRR 248 (279)
T ss_dssp HHHHHHHTTCEEEEEEEECBCGGGG-GGTCBCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEEEECCcccc-cccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876321 111112 2233444444444444555554444
No 36
>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold, hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP: c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A
Probab=99.77 E-value=9.4e-19 Score=180.12 Aligned_cols=188 Identities=9% Similarity=0.058 Sum_probs=134.0
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccH--HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM--PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN 265 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~--~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~ 265 (412)
.++.|.++|+.|+++++. ++.+++ .++.+..+|++.||.+|+||++++++++||+|++++++++++. .
T Consensus 262 ~~~~G~~~G~~VvVv~tG--------mG~~nAAi~~~eL~~~gvk~II~vGtAGgL~~di~lGDVVIa~~ai~~Dg~--~ 331 (484)
T 1t8s_A 262 AWHLITADGQGITLVNIG--------VGPSNAKTICDHLAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRDDHV--L 331 (484)
T ss_dssp EEEEEETTSCCEEEEECC--------SSHHHHHHHHHHHGGGCCSEEEECCEEEECSTTCCTTCEEEEEEEEEECCT--T
T ss_pred eEEEEEECCEEEEEEeCC--------CChHHHHHHHHHHHHcCCCEEEEEEEeeccCCCCcCCEEEEEeeEEECCCC--c
Confidence 789999999999987532 223444 4566688999999999999999999999999999999987751 2
Q ss_pred CCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHH--------cCCCcceeeceEEEEecCccC----CHHHHHHHHHc
Q psy9643 266 NPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD--------LNMSSIVKEGVYSVIGGPNFE----TVAELNMLRIC 333 (412)
Q Consensus 266 ~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~--------~g~~~~~~~Gvy~~~~GP~fe----T~AE~~~~~~~ 333 (412)
+.+ ++.. +..+.+..+...+.+++++ ++++ ++.|++ ++||+|. ++++.+.++.+
T Consensus 332 ~~y--------~~~~--~p~pa~~~l~~~L~~aA~~~~~~~g~~lg~~--v~~G~i--~SgD~Fy~E~r~~~~~~~~~~~ 397 (484)
T 1t8s_A 332 DAV--------LPPD--IPIPSIAEVQRALYDATKLVSGRPGEEVKQR--LRTGTV--VTTDDRNWELRYSASALRFNLS 397 (484)
T ss_dssp TTT--------SCTT--SCCCCCHHHHHHHHHHHHHHSSCCGGGGGGT--EEEEEE--EEESCTTGGGGHHHHHHHHHHH
T ss_pred ccc--------cCCC--CCCCCCHHHHHHHHHHHHHHhhhcccccCCc--eEEEEE--EEcCccccccCCHHHHHHHHhc
Confidence 222 1111 1236677888888887776 3666 889987 4799993 35667788889
Q ss_pred CCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643 334 GVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403 (412)
Q Consensus 334 Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l 403 (412)
|+++|+||+++++++|+++|+|+++|++|||++.+. ....+.+.+++.+ ++.+++.++..+.++.|
T Consensus 398 GalaVEMEsAAla~vA~~~gvp~l~Ir~VSD~a~~~-e~~~~~~~~~~~~---~a~~~ai~iaLeai~~L 463 (484)
T 1t8s_A 398 RAVAIDMESATIAAQGYRFRVPYGTLLCVSDKPLHG-EIKLPGQANRFYE---GAISEHLQIGIRAIDLL 463 (484)
T ss_dssp TEEEEESSHHHHHHHHHHTTCCEEEEEEEEECTTSS-CCC-------------CHHHHHHHHHHHHHHHH
T ss_pred CCeEEeccHHHHHHHHHHcCCCEEEEEEEEecCCcc-cccccccHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999642 1222345555433 33444455555555555
No 37
>3bje_A Nucleoside phosphorylase, putative; uridine phosphorylase, structural medical structural genomics of pathogenic protozoa consorti MSGPP; HET: R1P; 1.44A {Trypanosoma brucei}
Probab=99.56 E-value=5.7e-15 Score=146.92 Aligned_cols=168 Identities=10% Similarity=0.069 Sum_probs=120.3
Q ss_pred eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHH--c-------------------------CCCEEEEEeccCC
Q psy9643 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL--V-------------------------GVTHLLATNAAGG 240 (412)
Q Consensus 188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~--l-------------------------Gv~~II~~n~~G~ 240 (412)
..++|+++|++|.++.+..-. |+...+.-.|+.. + |++.||.+|+||+
T Consensus 77 ~~~tG~ykG~~Vsv~stGmG~-----psaaI~~~ELi~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~iIrvGT~Gg 151 (349)
T 3bje_A 77 RFATGTYKGTPVTVISTGMGV-----DNIEIVLNEIHALKEYDMERGQWRHRKGDADAPSAGPFFDPSTMKIIRLGTCGS 151 (349)
T ss_dssp EEEEEEETTEEEEEEECCSSH-----HHHHHHHHHHHHHHHEETTTTEECBCTTCTTSCTTCCBCCGGGCEEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEECCCCH-----HHHHHHHHHHHHHhhcccccccccccccccccccccccccCCCcEEEEeecccC
Confidence 578899999999998643321 1211112234443 3 6999999999999
Q ss_pred CCCCCCCccHHHHHHHHhhccCCCCCCCCCC----------------CCCCCCCCCCCCcccccHHHHHHHHHHHHHcC-
Q psy9643 241 LNPDYEVGDIMIIKDHINLMGFAGNNPLLGV----------------NEDRFGPRFPPMNKAYNKQLRAATLDIARDLN- 303 (412)
Q Consensus 241 l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~----------------~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g- 303 (412)
+++++++||+|+.+..+++++. .+++... .-..|+. ..++..++|+.|.+.+.+++++.+
T Consensus 152 l~~~l~vGdvVI~~~ai~~Dg~--~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~ad~~L~~~l~~aa~~~~~ 228 (349)
T 3bje_A 152 PAESVPPLALAVTRHAIGMDNT--SLYYSAGTRETSKDQQEIRRIVREQTGLRA-IDIYTSMAHPNITKSICAACDAHNA 228 (349)
T ss_dssp CCTTSCTTCEEEEEEEEECSCG--GGGGTTTTSCCCHHHHHHHHHHHHHSGGGG-SCCEEEECCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEeeeEeccCc--ccccccccccccccchhhhcccccccccCC-CCcccCcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999988877762 1222211 0000000 113445789999999999999887
Q ss_pred --------CCcceeeceEEEEecCccC---------------CHHHHHHHH---------HcCCcEEeCchhHHHHHHHH
Q psy9643 304 --------MSSIVKEGVYSVIGGPNFE---------------TVAELNMLR---------ICGVDAVGMSTVHEVITAHH 351 (412)
Q Consensus 304 --------~~~~~~~Gvy~~~~GP~fe---------------T~AE~~~~~---------~~Gad~VgMe~~pEa~~A~~ 351 (412)
.+ ++.|..+ +++.|- ++++.+.++ ++|+.+||||+++++++|+.
T Consensus 229 ~~~~~~~~~~--~~~G~t~--S~D~Fy~~q~r~~grf~~~~~~~~~~~kl~~~~~~~~~~~~gv~~vEMEsaal~~la~~ 304 (349)
T 3bje_A 229 ATGSEADKQQ--YVIGTTA--TASGFYGCQGRRVGRFMKHLTVPNMVEELGSLKFNLSNGVEVVTNIEMETSAICYLSDM 304 (349)
T ss_dssp TCCCGGGCCC--EEEEEEE--ECSSSSGGGTCCCGGGGGGCSSTTHHHHHHHCCEEETTEEECEEEEESSHHHHHHHHHH
T ss_pred cccccccccc--EEEEEEE--ECCccccCCcccccccccccccHHHHHHHHHhhhcchhhhcCcEEEECcHHHHHHHHHH
Confidence 77 8899664 565543 334445554 67999999999999999999
Q ss_pred cCCcEEEEEeeeccCC
Q psy9643 352 CGMTVTAFSLITNKCV 367 (412)
Q Consensus 352 ~Gi~~~~i~~VSd~a~ 367 (412)
+|+|+++|++|||...
T Consensus 305 ~g~~a~~i~~Vsdn~~ 320 (349)
T 3bje_A 305 LGYQAGAACVVVSKRV 320 (349)
T ss_dssp HTCEEEEEEEEEEESS
T ss_pred cCCCEEEEEEEEccCC
Confidence 9999999999999884
No 38
>3euf_A Uridine phosphorylase 1; nucleoside phosphorylase, uridine rescue, 5- benzylacyclouridine, alternative splicing, glycosyltransferase, transferase; HET: BAU; 1.90A {Homo sapiens} PDB: 3eue_A* 3nbq_A 3ku4_A 3kuk_A* 3kvr_A 3kvy_A
Probab=99.56 E-value=3.3e-15 Score=147.51 Aligned_cols=186 Identities=14% Similarity=0.186 Sum_probs=128.5
Q ss_pred eeCCeEEEEecceeeeecCCCCccccHHHHHHHH---cCCC--EEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643 193 LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL---VGVT--HLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP 267 (412)
Q Consensus 193 ~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~---lGv~--~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p 267 (412)
+++|++|+++.+.... |+...+.-.|+.. +|++ .||.+|+||++ ++++||+|+.+..++..+ ++
T Consensus 115 ~ykG~~Vsv~stGIG~-----psaaI~~~ELi~~~~~~gv~~~~iIriGtaGgl--~l~vGDvVIa~~av~~d~----t~ 183 (328)
T 3euf_A 115 MYKVGPVLSVSHGMGI-----PSISIMLHELIKLLYYARCSNVTIIRIGTSGGI--GLEPGTVVITEQAVDTCF----KA 183 (328)
T ss_dssp EEEETTEEEEECCSSH-----HHHHHHHHHHHHHHHHTTCBSCEEEEEEEEEES--SSCTTCEEEEEEEECTTS----CS
T ss_pred EECCEEEEEEECCCCH-----HHHHHHHHHHHHhhhhcCCCccEEEEEeeecCc--CCcCCcEEEecceecCCC----cc
Confidence 5678888887644322 2322233355555 6999 99999999999 699999999988775443 11
Q ss_pred CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHc-CCCcceeeceEEEEecCccCCHH-----------------HHHH
Q psy9643 268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDL-NMSSIVKEGVYSVIGGPNFETVA-----------------ELNM 329 (412)
Q Consensus 268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~-g~~~~~~~Gvy~~~~GP~feT~A-----------------E~~~ 329 (412)
.... ...|. ...+....|+.|.+.+.++++++ +++ ++.|.. .++++|-... ..+.
T Consensus 184 ~~~~--~~~g~-~~~~p~~aD~~L~~~l~~aa~~~~~~~--~~~G~~--~S~D~Fy~~q~r~~~~~~~~~~~~k~~~~~~ 256 (328)
T 3euf_A 184 EFEQ--IVLGK-RVIRKTDLNKKLVQELLLCSAELSEFT--TVVGNT--MCTLDFYEGQGRLDGALCSYTEKDKQAYLEA 256 (328)
T ss_dssp EEEE--EETTE-EEEEECCCCHHHHHHHHHHHHHHCSSC--EEEEEE--EECSCSSGGGTCSCSSBCCSCHHHHHHHHHH
T ss_pred chhh--hhcCC-CCccCCCCCHHHHHHHHHHHHhccCCC--eEEEEe--eccCccccCccccccccccchhhhHHHHHHH
Confidence 0000 00010 01122457999999999999998 888 999965 5788885431 1334
Q ss_pred HHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643 330 LRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSY 402 (412)
Q Consensus 330 ~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~ 402 (412)
++++|+.+||||+++.+++|+.+|+|+++|++|+|... .+++..+++++++.+.+.. .++|.++|++
T Consensus 257 ~~~~gv~avEMEsAAla~va~~~gv~a~~I~~isdnr~---~ge~~~~~~e~l~~~~~~~---~~~v~~~ik~ 323 (328)
T 3euf_A 257 AYAAGVRNIEMESSVFAAMCSACGLQAAVVCVTLLNRL---EGDQISSPRNVLSEYQQRP---QRLVSYFIKK 323 (328)
T ss_dssp HHHTTEEEEESSHHHHHHHHHHTTCEEEEEEEEEEETT---SCSSCCSCHHHHHHHHTHH---HHHHHHHHHH
T ss_pred HHHcCCEEEehHHHHHHHHHHHcCCcEEEEEEEEcccc---CCccCCCcHHHHHHHHHHH---HHHHHHHHHH
Confidence 66789999999999999999999999999999998774 2345566667666554443 3455555554
No 39
>3p0f_A Uridine phosphorylase 2; transferase; HET: BAU; 1.54A {Homo sapiens} PDB: 3p0e_A* 2xrf_A
Probab=99.55 E-value=4.2e-15 Score=145.02 Aligned_cols=186 Identities=13% Similarity=0.182 Sum_probs=129.3
Q ss_pred eeCCeEEEEecceeeeecCCCCccccHHHHHHHHc-----CCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643 193 LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLV-----GVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP 267 (412)
Q Consensus 193 ~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~l-----Gv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p 267 (412)
.++|++|+++++.... |+...+.-.|++.+ +++.||.+|+||+++ +++||+|+.+..++. .+ ...
T Consensus 86 ~ykG~~Vsv~~tGiG~-----psaaI~~~ELi~~~~~~~~~~~~iIriGtaGgl~--l~vGDvVIa~~av~~-~~--~~~ 155 (297)
T 3p0f_A 86 MYKTGPVLAISHGMGI-----PSISIMLHELIKLLHHARCCDVTIIRIGTSGGIG--IAPGTVVITDIAVDS-FF--KPR 155 (297)
T ss_dssp EEEETTEEEEECCSSH-----HHHHHHHHHHHHHHHHTTCBSCEEEEEEEEEESS--SCTTCEEEEEEEECT-TS--CSE
T ss_pred eECCeEEEEEECCCCH-----HHHHHHHHHHHHhccccccCcceEEEEEeecccc--ccCCcEEeechhhhc-cc--ccc
Confidence 3567888887644322 23222333555544 256999999999999 999999998876631 11 000
Q ss_pred CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHc-CCCcceeeceEEEEecCccCCHH-----------------HHHH
Q psy9643 268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDL-NMSSIVKEGVYSVIGGPNFETVA-----------------ELNM 329 (412)
Q Consensus 268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~-g~~~~~~~Gvy~~~~GP~feT~A-----------------E~~~ 329 (412)
+.+. ..+. ........|+.|.+.+.++++++ +++ ++.|.. .++++|-... ..+.
T Consensus 156 ~~~~---~~~~-~~~~~~~ad~~L~~~l~~aa~~~~~~~--~~~G~~--~S~D~Fy~~q~r~~~~~~~~~~~~k~~~~~~ 227 (297)
T 3p0f_A 156 FEQV---ILDN-IVTRSTELDKELSEELFNCSKEIPNFP--TLVGHT--MCTYDFYEGQGRLDGALCSFSREKKLDYLKR 227 (297)
T ss_dssp EEEE---ETTE-EEEEECBCCHHHHHHHHHHHHTSTTCC--EEEEEE--EECSCSSGGGTCSSSSCCCSCHHHHHHHHHH
T ss_pred cccc---ccCc-ccccccCCCHHHHHHHHHHHHhcCCCC--eEEEEE--EECCccccCCcccccccccchhhhHHHHHHH
Confidence 0000 0000 01123457999999999999998 888 999965 5788885321 2345
Q ss_pred HHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643 330 LRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSY 402 (412)
Q Consensus 330 ~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~ 402 (412)
|+.+|+.+||||+++.+++|+.+|+|+++|++|+|... .+++..+++++++.+.+++. +++.++|++
T Consensus 228 ~~~~gv~avEMEsAAl~~va~~~gv~a~~i~~isdnr~---~~~~~~~~~~~~~~~~~~~~---~lv~~~i~~ 294 (297)
T 3p0f_A 228 AFKAGVRNIEMESTVFAAMCGLCGLKAAVVCVTLLDRL---DCDQINLPHDVLVEYQQRPQ---LLISNFIRR 294 (297)
T ss_dssp HHHHTEEEEESSHHHHHHHHHHTTCEEEEEEEEEEETT---TCSSCCCCHHHHHHHHTHHH---HHHHHHHHH
T ss_pred HHHcCcEEEehHHHHHHHHHHHcCCcEEEEEEEEcCcc---CCCcccChHHHHHHHHHHHH---HHHHHHHHH
Confidence 67789999999999999999999999999999999874 34566788898888777654 456666654
No 40
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.53 E-value=1.4e-15 Score=160.25 Aligned_cols=120 Identities=21% Similarity=0.290 Sum_probs=71.6
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH---HHHHHhhhcCCCCceeEeeCcCcccccccccCceee
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS---IAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIF 169 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~---~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~ 169 (412)
.+||+||||+|||||||+.+| |+. |.+. ....++. .....+|.++.|++||||+-|.. ..+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~l---L~~tG~i~--~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~----------~~~ 95 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKL---LLFGGAIQ--MAGSVKARKAARHATSDWMAMERERGISVTTSV----------MQF 95 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHH---HHHTTCHH--HHHHHHHC--------------------CTTTE----------EEE
T ss_pred cceEEEEeCCCCCHHHHHHHH---HHhcCccc--ccceeecCccccccccCChHHHHHCCCcEeece----------EEE
Confidence 789999999999999999999 665 4332 1233332 22457899999999999997754 344
Q ss_pred ecCCCCCccccCCCCCce---eE--EEEeeCCeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEec
Q psy9643 170 PYDTIPYFPVSTVPGHKG---QL--VFGLINGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNA 237 (412)
Q Consensus 170 ~~~~~~~~~i~d~pGH~~---~l--~~G~~~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~ 237 (412)
.|.+ ..++++|||||.| ++ ....++|+-+|+- |++..+ +.+...|++.|+++||
T Consensus 96 ~~~~-~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-------------~~a~~~~lp~i~fINK 161 (548)
T 3vqt_A 96 PYRD-RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-------------DVCRMRATPVMTFVNK 161 (548)
T ss_dssp EETT-EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-------------HHHHHTTCCEEEEEEC
T ss_pred EECC-EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-------------HHHHHhCCceEEEEec
Confidence 5554 2579999999987 11 1123556655553 444444 7899999999999999
Q ss_pred cCCCC
Q psy9643 238 AGGLN 242 (412)
Q Consensus 238 ~G~l~ 242 (412)
+|-.+
T Consensus 162 ~Dr~~ 166 (548)
T 3vqt_A 162 MDREA 166 (548)
T ss_dssp TTSCC
T ss_pred ccchh
Confidence 98654
No 41
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.48 E-value=5.5e-16 Score=166.13 Aligned_cols=121 Identities=23% Similarity=0.445 Sum_probs=83.7
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD 172 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~ 172 (412)
.+||+||||||||||||+++| |+. |.+... .+++. ....+|..+.|++||||+.|.... +.|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~L---L~~~G~i~~~--g~v~~-g~~~~D~~~~EreRGITI~s~~~~----------~~~~ 65 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESL---LYNSGAITEL--GSVDK-GTTRTDNTLLERQRGITIQTGITS----------FQWE 65 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHH---HHHHTCCSSC--SSCCC-SCCSTTCSTTHHHHSSCSSCCCCC----------CBCS
T ss_pred eeEEEEEcCCCCCHHHHHHHH---HHHcCCCccc--ccccc-CCcccCCcHHHHhCCCcEEeeeEE----------EEEC
Confidence 589999999999999999999 554 433211 01111 112478888999999999775543 3444
Q ss_pred CCCCccccCCCCCce---eEEEE--eeCCeEEEE-------ecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCC
Q psy9643 173 TIPYFPVSTVPGHKG---QLVFG--LINGIPIMC-------MQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG 240 (412)
Q Consensus 173 ~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~-------~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~ 240 (412)
+ ..++++|||||.| ++..+ .++|+-+|+ .||+.++ +.+...|++.|+++||+|.
T Consensus 66 ~-~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-------------~~a~~~~lp~i~~INKmDr 131 (638)
T 3j25_A 66 N-TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-------------HALRKMGIPTIFFINKIDQ 131 (638)
T ss_dssp S-CBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-------------HHHHHHTCSCEECCEECCS
T ss_pred C-EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-------------HHHHHcCCCeEEEEecccc
Confidence 3 3589999999987 22222 234444443 2556555 8999999999999999997
Q ss_pred CCCC
Q psy9643 241 LNPD 244 (412)
Q Consensus 241 l~~~ 244 (412)
...+
T Consensus 132 ~~a~ 135 (638)
T 3j25_A 132 NGID 135 (638)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 5544
No 42
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.44 E-value=6e-14 Score=143.96 Aligned_cols=148 Identities=23% Similarity=0.352 Sum_probs=92.3
Q ss_pred cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCcc
Q psy9643 89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLS 157 (412)
Q Consensus 89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~ 157 (412)
..+|+++||+++||+|||||||+++| ++. +.+.....+++++ .++|++|+.+.++++||++..+..
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~L---l~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~ 88 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQI---MYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRA 88 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHH---HHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEE
Confidence 45688999999999999999999999 565 5555555444432 247899999999999999966543
Q ss_pred cccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCC-eEEEEecceeeeec-CCCC-ccccHHHHHHHHcCCCE
Q psy9643 158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLING-IPIMCMQGRFHYYE-GYPL-WKCAMPIRVMKLVGVTH 231 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~qgr~H~ye-g~~~-~~v~~~i~ll~~lGv~~ 231 (412)
.+ .+. ...|.++|+|||.+ ++..|.... ..++++.......| |... .+....+.+++.+|+++
T Consensus 89 ~~----------~~~-~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~ 157 (439)
T 3j2k_7 89 YF----------ETE-KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH 157 (439)
T ss_pred EE----------ecC-CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCe
Confidence 22 222 23678999999976 444443221 12222211110000 0000 01111237888999995
Q ss_pred -EEEEeccCCCCCCCCCccH
Q psy9643 232 -LLATNAAGGLNPDYEVGDI 250 (412)
Q Consensus 232 -II~~n~~G~l~~~~~~Gd~ 250 (412)
|+++||+|....++....+
T Consensus 158 iIvviNK~Dl~~~~~~~~~~ 177 (439)
T 3j2k_7 158 LIVLINKMDDPTVNWSNERY 177 (439)
T ss_pred EEEEeecCCCcccchHHHHH
Confidence 5679999986655444333
No 43
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.43 E-value=2e-14 Score=155.86 Aligned_cols=128 Identities=22% Similarity=0.201 Sum_probs=65.7
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD 172 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~ 172 (412)
.+||+||||||||||||+++| |+. |.+.. ..+++.. .-.+|..+.|++||||+-|..-. +.|.
T Consensus 13 IRNi~IiaHvd~GKTTL~d~L---L~~~g~i~~--~g~v~~~-~~~~D~~~~E~eRGITI~s~~~s----------~~~~ 76 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERV---LFYTGVNHK--LGEVHDG-AATTDWMVQEQERGITITSAAVT----------TFWK 76 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHH---HHHHHHHHH--C-------------------------CCEEE----------EEEC
T ss_pred CeEEEEEcCCCCCHHHHHHHH---HHhcCCCCc--CceecCC-CccCCChHHHHHcCCeEEeeeEE----------EEec
Confidence 689999999999999999999 655 32211 1122222 23488889999999999774433 3332
Q ss_pred C------CCCccccCCCCCce---eEE--EEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643 173 T------IPYFPVSTVPGHKG---QLV--FGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241 (412)
Q Consensus 173 ~------~~~~~i~d~pGH~~---~l~--~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l 241 (412)
. -..++++|+|||.| +.. .-.++|+-+|+- +-||..+++. ...+.+...|++.|+++||+|..
T Consensus 77 ~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVD-----aveGV~~qT~-~v~~~a~~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 77 GSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFC-----GTSGVEPQSE-TVWRQANKYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEE-----TTTCSCHHHH-HHHHHHHHHTCCEEEEEECSSST
T ss_pred cCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEE-----CCCCCchhHH-HHHHHHHHcCCCeEEEEcccccc
Confidence 1 12468999999987 111 113455555542 1122222111 12378889999999999999875
Q ss_pred CC
Q psy9643 242 NP 243 (412)
Q Consensus 242 ~~ 243 (412)
..
T Consensus 151 ~a 152 (709)
T 4fn5_A 151 GA 152 (709)
T ss_dssp TC
T ss_pred Cc
Confidence 43
No 44
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.34 E-value=6.5e-13 Score=137.29 Aligned_cols=142 Identities=27% Similarity=0.385 Sum_probs=64.6
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHH----------HHHHhhhcCCCCceeEeeCcCcccc
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSI----------AKFLLDSISIRPKIGIICGSGLSTI 159 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~----------~~~i~~~~~~e~~~GIi~GsGl~~~ 159 (412)
+|+++||+++||+|||||||+++| ++. +.......+++.+. .+|++|..+.|+++|+|++.+...+
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~L---l~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~ 116 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNI---LFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF 116 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHH---HHHTTSSCHHHHHHHHHHTCC----------------------------CCEE
T ss_pred CCCeeEEEEEECCCCCHHHHHHHH---HHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEE
Confidence 477999999999999999999999 543 44444433333322 3688999999999999998765432
Q ss_pred cccccCceeeecCCCCCccccCCCCCce---eEEEEeeCC-eEEEEecceeeee-cCCCC-ccccHHHHHHHHcCCC-EE
Q psy9643 160 ADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLING-IPIMCMQGRFHYY-EGYPL-WKCAMPIRVMKLVGVT-HL 232 (412)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~qgr~H~y-eg~~~-~~v~~~i~ll~~lGv~-~I 232 (412)
.+. ...+.++|+|||.+ ++..|.... ..++++......+ +++.. .+....+.+++.+|++ .|
T Consensus 117 ----------~~~-~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~ii 185 (467)
T 1r5b_A 117 ----------ETE-HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLV 185 (467)
T ss_dssp ----------ECS-SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEE
T ss_pred ----------ecC-CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEE
Confidence 222 23578999999976 455553221 2222222111000 01110 1111133677889998 56
Q ss_pred EEEeccCCCCCCCC
Q psy9643 233 LATNAAGGLNPDYE 246 (412)
Q Consensus 233 I~~n~~G~l~~~~~ 246 (412)
+++||+|..+.++.
T Consensus 186 vviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 186 VVINKMDEPSVQWS 199 (467)
T ss_dssp EEEECTTSTTCSSC
T ss_pred EEEECccCCCcccc
Confidence 77999998654443
No 45
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.22 E-value=1.6e-12 Score=138.20 Aligned_cols=139 Identities=20% Similarity=0.375 Sum_probs=58.2
Q ss_pred cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCcc
Q psy9643 89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLS 157 (412)
Q Consensus 89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~ 157 (412)
.++|+++||+++||+|||||||+++| ++. +.+....+.++++ ..+|++|.+..|+++|||+..+..
T Consensus 172 ~~~k~~~~I~iiG~~d~GKSTLi~~L---l~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~ 248 (592)
T 3mca_A 172 SNPKPVVHLVVTGHVDSGKSTMLGRI---MFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVAST 248 (592)
T ss_dssp SCCCCEEEEEEECCSSSTHHHHHHHH---HHHHHCC--------------------------------------------
T ss_pred ccCCCccEEEEEcCCCCCHHHHHHHH---HHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEE
Confidence 45788999999999999999999999 443 3333332222221 237899999999999999977654
Q ss_pred cccccccCceeeecCCCCCccccCCCCCce---eEEEEee--CCeEEEEecceeeeec-CCCCc-cccHHHHHHHHcCCC
Q psy9643 158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLI--NGIPIMCMQGRFHYYE-GYPLW-KCAMPIRVMKLVGVT 230 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~--~g~~vv~~qgr~H~ye-g~~~~-~v~~~i~ll~~lGv~ 230 (412)
.+ .+. -..+.++|+|||.+ ++..|.. ++.-+ ++......+| |.... .....+.++..+|++
T Consensus 249 ~~----------~~~-~~~i~iiDTPGh~~f~~~~~~~~~~aD~alL-VVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip 316 (592)
T 3mca_A 249 TF----------ESD-KKIYEIGDAPGHRDFISGMIAGASSADFAVL-VVDSSQNNFERGFLENGQTREHAYLLRALGIS 316 (592)
T ss_dssp ---------------------CCEEESSSEEEEECCC-------CCS-EEEEEECCSSTTSCSCSSHHHHHHHHHHSSCC
T ss_pred EE----------EeC-CeEEEEEECCChHHHHHHHHHHHhhCCEEEE-EEECCCCccccccccchHHHHHHHHHHHcCCC
Confidence 33 111 23578999999975 2333321 12222 2221111111 22111 112234788899998
Q ss_pred E-EEEEeccCCCC
Q psy9643 231 H-LLATNAAGGLN 242 (412)
Q Consensus 231 ~-II~~n~~G~l~ 242 (412)
+ |+++||++.++
T Consensus 317 ~iIvviNKiDl~~ 329 (592)
T 3mca_A 317 EIVVSVNKLDLMS 329 (592)
T ss_dssp CEEEEEECGGGGT
T ss_pred eEEEEEecccccc
Confidence 4 55799999765
No 46
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.21 E-value=1.8e-12 Score=133.73 Aligned_cols=140 Identities=24% Similarity=0.357 Sum_probs=85.2
Q ss_pred cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHH----------HHHHhhhcCCCCceeEeeCcCcc
Q psy9643 89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSI----------AKFLLDSISIRPKIGIICGSGLS 157 (412)
Q Consensus 89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~----------~~~i~~~~~~e~~~GIi~GsGl~ 157 (412)
.++|+++||+++||+|||||||+++| ++. +..+.+...+++.. ++|++|+...|+++||+++.+..
T Consensus 2 ~~~~~~~~i~iiG~~~~GKSTLi~~L---l~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~ 78 (458)
T 1f60_A 2 GKEKSHINVVVIGHVDSGKSTTTGHL---IYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW 78 (458)
T ss_dssp CCCCEEEEEEEEECTTSCHHHHHHHH---HHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE
T ss_pred CCCCceeEEEEEcCCCCCHHHHHHHH---HHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE
Confidence 45788999999999999999999999 444 44554444444332 36788888889999999977654
Q ss_pred cccccccCceeeecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeec-CCCCc-cccHHHHHHHHcCCCE
Q psy9643 158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYE-GYPLW-KCAMPIRVMKLVGVTH 231 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~ye-g~~~~-~v~~~i~ll~~lGv~~ 231 (412)
.+ .+. ...+.++|+|||.+ ++..+... ...++++.......+ ++... +....+.+++.+|++.
T Consensus 79 ~~----------~~~-~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~ 147 (458)
T 1f60_A 79 KF----------ETP-KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQ 147 (458)
T ss_dssp EE----------ECS-SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCE
T ss_pred EE----------ecC-CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCe
Confidence 32 222 22478899999976 33333222 122222211100000 00000 1111236778899985
Q ss_pred -EEEEeccCCCC
Q psy9643 232 -LLATNAAGGLN 242 (412)
Q Consensus 232 -II~~n~~G~l~ 242 (412)
|+++||+|..+
T Consensus 148 iivviNK~Dl~~ 159 (458)
T 1f60_A 148 LIVAVNKMDSVK 159 (458)
T ss_dssp EEEEEECGGGGT
T ss_pred EEEEEEcccccc
Confidence 55699999763
No 47
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.17 E-value=9.3e-12 Score=127.40 Aligned_cols=142 Identities=27% Similarity=0.480 Sum_probs=75.7
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCcccc
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLSTI 159 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~~~ 159 (412)
+|+++||+++||+|||||||+++| ++. +..+.+...+++. ..+|++|..+.|+++|++++.+...+
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~L---l~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~ 79 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRL---LMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF 79 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHH---HHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHH---HHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE
Confidence 577999999999999999999999 544 4444443333322 13578999999999999997765332
Q ss_pred cccccCceeeecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeec-CCCC-ccccHHHHHHHHcCCCE-E
Q psy9643 160 ADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYE-GYPL-WKCAMPIRVMKLVGVTH-L 232 (412)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~ye-g~~~-~~v~~~i~ll~~lGv~~-I 232 (412)
.+. ...+.++|+|||.+ ++..+... ...++++......+| +..+ .+......+++.+|++. |
T Consensus 80 ----------~~~-~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~ii 148 (435)
T 1jny_A 80 ----------ETK-KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLI 148 (435)
T ss_dssp ----------ECS-SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCE
T ss_pred ----------ecC-CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEE
Confidence 222 23578999999976 33333211 122223221111111 0000 11111236778899864 5
Q ss_pred EEEeccCCCCCCCC
Q psy9643 233 LATNAAGGLNPDYE 246 (412)
Q Consensus 233 I~~n~~G~l~~~~~ 246 (412)
+++||+|..++++.
T Consensus 149 vviNK~Dl~~~~~~ 162 (435)
T 1jny_A 149 VAVNKMDLTEPPYD 162 (435)
T ss_dssp EEEECGGGSSSTTC
T ss_pred EEEEcccCCCcccc
Confidence 67999998775543
No 48
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.07 E-value=2.6e-11 Score=125.63 Aligned_cols=139 Identities=19% Similarity=0.382 Sum_probs=72.1
Q ss_pred cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHH----------HHHHHHhhhcCCCCceeEeeCcCcc
Q psy9643 89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQ----------SIAKFLLDSISIRPKIGIICGSGLS 157 (412)
Q Consensus 89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~----------~~~~~i~~~~~~e~~~GIi~GsGl~ 157 (412)
.++|+++||+++||+|+|||||+++|+ +. +.+......+++ ...+|++|.+..++++||++..+..
T Consensus 28 ~~~k~~~ki~iiG~~~~GKSTLi~~Ll---~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~ 104 (483)
T 3p26_A 28 KSALPHLSFVVLGHVDAGKSTLMGRLL---YDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTS 104 (483)
T ss_dssp HHSCCEEEEEEESCGGGTHHHHHHHHH---HHTTSSCHHHHHHHCC------------------------CCSSCCCCEE
T ss_pred hcCCCceEEEEECCCCCCHHHHHHHHH---HhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeE
Confidence 347889999999999999999999994 43 444443333321 2247889999999999999966543
Q ss_pred cccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCCeE--EEEecceee-eecCCCCc-cccHHHHHHHHcCCC
Q psy9643 158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLINGIP--IMCMQGRFH-YYEGYPLW-KCAMPIRVMKLVGVT 230 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g~~--vv~~qgr~H-~yeg~~~~-~v~~~i~ll~~lGv~ 230 (412)
.+ .+ +...+.++|+|||.+ ++..+. .+.. ++++..... ..++.... .......+++.+|++
T Consensus 105 ~~----------~~-~~~~~~iiDTPG~~~f~~~~~~~~-~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~ 172 (483)
T 3p26_A 105 HF----------ST-HRANFTIVDAPGHRDFVPNAIMGI-SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIH 172 (483)
T ss_dssp EE----------EC-SSCEEEEECCCCCGGGHHHHHHHH-TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCC
T ss_pred EE----------ec-CCceEEEEECCCcHHHHHHHHHhh-hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCC
Confidence 32 22 223578999999975 222222 2222 222211110 11111111 111133678889987
Q ss_pred -EEEEEeccCCCC
Q psy9643 231 -HLLATNAAGGLN 242 (412)
Q Consensus 231 -~II~~n~~G~l~ 242 (412)
.|++.||+|..+
T Consensus 173 ~iIvviNK~Dl~~ 185 (483)
T 3p26_A 173 NLIIAMNKMDNVD 185 (483)
T ss_dssp CEEEEEECGGGGT
T ss_pred cEEEEEECcCccc
Confidence 455699999765
No 49
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.06 E-value=2.1e-11 Score=123.21 Aligned_cols=118 Identities=36% Similarity=0.496 Sum_probs=75.8
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeee
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFP 170 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~ 170 (412)
|+++||+++||+|||||||+++|++...+ |..... ..+.+|.+..|+++|+|++.+. ..
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~--------~~~~~d~~~~e~~~giTi~~~~------------~~ 60 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFK--------KYEEIDNAPEERARGITINAAH------------VE 60 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCC--------CHHHHHSCCEEEETTEEEECEE------------EE
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccc--------hhhhhhcCHHHHhcCcEEEeee------------EE
Confidence 67899999999999999999999653222 111000 0124677788899999996533 22
Q ss_pred cC-CCCCccccCCCCCce---eEEEEeeC-CeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCCE-EEEEe
Q psy9643 171 YD-TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTH-LLATN 236 (412)
Q Consensus 171 ~~-~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~-II~~n 236 (412)
|. +...+.++|+|||.+ ++..+... ...++++ |++.|+ .+++.+|++. +++.|
T Consensus 61 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-------------~~~~~~~vp~iivviN 127 (397)
T 1d2e_A 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-------------LLARQIGVEHVVVYVN 127 (397)
T ss_dssp EECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-------------HHHHHTTCCCEEEEEE
T ss_pred eccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-------------HHHHHcCCCeEEEEEE
Confidence 22 234678999999965 33333211 1222222 344444 6778899996 57799
Q ss_pred ccCCCC
Q psy9643 237 AAGGLN 242 (412)
Q Consensus 237 ~~G~l~ 242 (412)
|+|..+
T Consensus 128 K~Dl~~ 133 (397)
T 1d2e_A 128 KADAVQ 133 (397)
T ss_dssp CGGGCS
T ss_pred CcccCC
Confidence 999764
No 50
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.06 E-value=2.7e-11 Score=123.87 Aligned_cols=126 Identities=24% Similarity=0.315 Sum_probs=72.5
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHH------------HHHHHhhhcCCCCceeEeeCcCcc
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQS------------IAKFLLDSISIRPKIGIICGSGLS 157 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~------------~~~~i~~~~~~e~~~GIi~GsGl~ 157 (412)
++|+++||+++||+|||||||+++|++.. +.+....+.++.. .+++++|.++.|+++||++..++.
T Consensus 20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~--~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~ 97 (434)
T 1zun_B 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDS--KMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR 97 (434)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHT--TCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHhhc--CCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeee
Confidence 35678999999999999999999994321 2221111111110 235778999999999999965543
Q ss_pred cccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCCeE--EEEe--------cceeeeecCCCCccccHHHHHH
Q psy9643 158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLINGIP--IMCM--------QGRFHYYEGYPLWKCAMPIRVM 224 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g~~--vv~~--------qgr~H~yeg~~~~~v~~~i~ll 224 (412)
.+ .+ +...+.+.|+|||.+ ++..+ +.... ++++ |++.|+ .++
T Consensus 98 ~~----------~~-~~~~~~iiDtpGh~~f~~~~~~~-~~~aD~~ilVvDa~~g~~~qt~~~l-------------~~~ 152 (434)
T 1zun_B 98 YF----------ST-AKRKFIIADTPGHEQYTRNMATG-ASTCDLAIILVDARYGVQTQTRRHS-------------YIA 152 (434)
T ss_dssp EE----------EC-SSEEEEEEECCCSGGGHHHHHHH-HTTCSEEEEEEETTTCSCHHHHHHH-------------HHH
T ss_pred Ee----------ec-CCceEEEEECCChHHHHHHHHHH-HhhCCEEEEEEECCCCCcHHHHHHH-------------HHH
Confidence 22 11 122478899999976 23322 22222 2222 234443 677
Q ss_pred HHcCCCE-EEEEeccCCCC
Q psy9643 225 KLVGVTH-LLATNAAGGLN 242 (412)
Q Consensus 225 ~~lGv~~-II~~n~~G~l~ 242 (412)
..+|++. |++.||+|..+
T Consensus 153 ~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 153 SLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp HHTTCCEEEEEEECTTTTT
T ss_pred HHcCCCeEEEEEEcCcCCc
Confidence 8899985 55699999765
No 51
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.01 E-value=4.1e-11 Score=127.72 Aligned_cols=142 Identities=20% Similarity=0.409 Sum_probs=87.1
Q ss_pred ccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHH----------HHHHhhhcCCCCceeEeeCc
Q psy9643 86 QVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSI----------AKFLLDSISIRPKIGIICGS 154 (412)
Q Consensus 86 ~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~----------~~~i~~~~~~e~~~GIi~Gs 154 (412)
....++|+++||+++||+|+|||||+++| ++. +.+......++++. .+|+++.+..++.+||++..
T Consensus 159 ~~l~~~k~~lkV~ivG~~n~GKSTLin~L---l~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~ 235 (611)
T 3izq_1 159 AFVKSALPHLSFVVLGHVDAGKSTLMGRL---LYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSI 235 (611)
T ss_dssp --CCCCCCCCEEEEECCSSSCHHHHHHHH---HSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSC
T ss_pred HHHhccCCceEEEEEECCCCCHHHHHHHH---HHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEee
Confidence 34456788999999999999999999999 554 44555545554433 26888888888999999976
Q ss_pred CcccccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCCeE--EEEecceeeeec-CCCCc-cccHHHHHHHHc
Q psy9643 155 GLSTIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLINGIP--IMCMQGRFHYYE-GYPLW-KCAMPIRVMKLV 227 (412)
Q Consensus 155 Gl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g~~--vv~~qgr~H~ye-g~~~~-~v~~~i~ll~~l 227 (412)
+...+ .+. ...+.++|+|||.+ ++..+. .+.. ++++......+| +.... .....+.++..+
T Consensus 236 ~~~~~----------~~~-~~~~~iiDTPG~e~f~~~~~~~~-~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l 303 (611)
T 3izq_1 236 CTSHF----------STH-RANFTIVDAPGHRDFVPNAIMGI-SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL 303 (611)
T ss_dssp SCCEE----------ECS-SCEEEEEECCSSSCHHHHHTTTS-SCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT
T ss_pred eeEEE----------ecC-CceEEEEECCCCcccHHHHHHHH-hhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc
Confidence 55432 222 23578999999975 222222 2222 222211110001 11111 111134778889
Q ss_pred CCCEE-EEEeccCCCC
Q psy9643 228 GVTHL-LATNAAGGLN 242 (412)
Q Consensus 228 Gv~~I-I~~n~~G~l~ 242 (412)
|++.+ +++||++..+
T Consensus 304 gi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 304 GIHNLIIAMNKMDNVD 319 (611)
T ss_dssp TCCEEEEEEECTTTTT
T ss_pred CCCeEEEEEecccccc
Confidence 99854 4589999765
No 52
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.99 E-value=7.6e-11 Score=119.53 Aligned_cols=144 Identities=22% Similarity=0.291 Sum_probs=74.2
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccccccc--Ccee
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSIT--DRHI 168 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~--~~~~ 168 (412)
.|+++||+++||+|||||||+++|++.. .++...++++|||++.++..+.-... ....
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~--------------------~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y 64 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVW--------------------TDRHSEELRRGISIRLGYADCEIRKCPQCGTY 64 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCC--------------------CCC-------CCCCCCEEEEEEEEECTTTCCE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCc--------------------cccCcccccCCcEEEecccccccccccccccc
Confidence 4669999999999999999999995431 12334567789999887654310000 0000
Q ss_pred e----------ecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCE-EE
Q psy9643 169 F----------PYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTH-LL 233 (412)
Q Consensus 169 ~----------~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~-II 233 (412)
. .|.....+.++|+|||.+ +++.|... ...++++... +|.+..+....+.+++.+|++. |+
T Consensus 65 ~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~----~g~~~~qt~e~l~~~~~l~~~~iiv 140 (408)
T 1s0u_A 65 TTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAAN----EPCPQPQTKEHLMALEILGIDKIII 140 (408)
T ss_dssp ESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETT----SCSSCHHHHHHHHHHHHTTCCCEEE
T ss_pred cccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECC----CCCCCchhHHHHHHHHHcCCCeEEE
Confidence 0 000113578899999976 33333211 1222222111 0110011111226778899865 56
Q ss_pred EEeccCCCCCCCCCccHHHHHHHHh
Q psy9643 234 ATNAAGGLNPDYEVGDIMIIKDHIN 258 (412)
Q Consensus 234 ~~n~~G~l~~~~~~Gd~vi~~d~i~ 258 (412)
+.||+|..+.+...-.+-.+.+++.
T Consensus 141 v~NK~Dl~~~~~~~~~~~~i~~~l~ 165 (408)
T 1s0u_A 141 VQNKIDLVDEKQAEENYEQIKEFVK 165 (408)
T ss_dssp EEECTTSSCTTTTTTHHHHHHHHHT
T ss_pred EEEccCCCCHHHHHHHHHHHHHHHh
Confidence 6999998775532223334455543
No 53
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.97 E-value=5.3e-11 Score=120.55 Aligned_cols=124 Identities=31% Similarity=0.434 Sum_probs=74.2
Q ss_pred ccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cc-cchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc
Q psy9643 86 QVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GM-LGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI 163 (412)
Q Consensus 86 ~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~-~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~ 163 (412)
+.+.++|+++||+++||+|||||||+.+|++.+.+ |. ..... .+.+|....|+++|+++....
T Consensus 3 ~~~~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~--------~~~~d~~~~e~~~GiTi~~~~------- 67 (405)
T 2c78_A 3 GEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD--------YGDIDKAPEERARGITINTAH------- 67 (405)
T ss_dssp ------CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCC--------HHHHSCSHHHHHHTCCCSCEE-------
T ss_pred ccccCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccc--------hhhccCCHHHHHcCCCEEeee-------
Confidence 45667888999999999999999999999653222 11 00000 124566666788999885422
Q ss_pred cCceeeecC-CCCCccccCCCCCce---eEEEEe--eCCeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCC
Q psy9643 164 TDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGL--INGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVT 230 (412)
Q Consensus 164 ~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~--~~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~ 230 (412)
..|. ....+.++|+|||.+ ++..+. .++.-+|+- |++.|+ .+++.+|++
T Consensus 68 -----~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l-------------~~~~~~~ip 129 (405)
T 2c78_A 68 -----VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI-------------LLARQVGVP 129 (405)
T ss_dssp -----EEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-------------HHHHHTTCC
T ss_pred -----eEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-------------HHHHHcCCC
Confidence 2222 234578999999976 222222 223322321 233333 677889999
Q ss_pred E-EEEEeccCCCC
Q psy9643 231 H-LLATNAAGGLN 242 (412)
Q Consensus 231 ~-II~~n~~G~l~ 242 (412)
+ +++.||+|..+
T Consensus 130 ~iivviNK~Dl~~ 142 (405)
T 2c78_A 130 YIVVFMNKVDMVD 142 (405)
T ss_dssp CEEEEEECGGGCC
T ss_pred EEEEEEECccccC
Confidence 5 56799999764
No 54
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.96 E-value=1.4e-10 Score=129.87 Aligned_cols=123 Identities=34% Similarity=0.434 Sum_probs=65.7
Q ss_pred cccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccC
Q psy9643 87 VYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITD 165 (412)
Q Consensus 87 ~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~ 165 (412)
...++|+++||+++||+|||||||+++|++...+ |... + ...+.+|+++.|+++|||+.++..
T Consensus 289 ~~~~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~---f-----~~~a~lD~~~~ErerGITIdva~v-------- 352 (1289)
T 3avx_A 289 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGA---A-----RAFDQIDNAPEEKARGITINTSHV-------- 352 (1289)
T ss_dssp -CCCCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC-----------------------------CCSCE--------
T ss_pred hhhccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccc---c-----ccccccccccccccCceeEEEEEE--------
Confidence 4557888999999999999999999999653221 1100 0 001256777889999999965432
Q ss_pred ceeeecC-CCCCccccCCCCCce---eEEEEeeC-CeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCCE-
Q psy9643 166 RHIFPYD-TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTH- 231 (412)
Q Consensus 166 ~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~- 231 (412)
.|. +...+.++|+|||.+ ++..|.-. ...++++ |++.|+ .+++.+|+++
T Consensus 353 ----~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL-------------~ll~~lgIP~I 415 (1289)
T 3avx_A 353 ----EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-------------LLGRQVGVPYI 415 (1289)
T ss_dssp ----EEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHH-------------HHHHHHTCSCE
T ss_pred ----EEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHH-------------HHHHHcCCCeE
Confidence 222 234678999999976 33333211 1122222 344444 6778899996
Q ss_pred EEEEeccCCCC
Q psy9643 232 LLATNAAGGLN 242 (412)
Q Consensus 232 II~~n~~G~l~ 242 (412)
||++||+|..+
T Consensus 416 IVVINKiDLv~ 426 (1289)
T 3avx_A 416 IVFLNKCDMVD 426 (1289)
T ss_dssp EEEEECCTTCC
T ss_pred EEEEeeccccc
Confidence 66799999864
No 55
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.96 E-value=1.6e-10 Score=122.61 Aligned_cols=126 Identities=21% Similarity=0.253 Sum_probs=55.8
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY 171 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~ 171 (412)
..+||+++||+|||||||+.+| ++. |.+..+. ..++++|.++.|+++||++.+.... +.|
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rL---l~~tg~i~~~~------~~~~~~D~~~~ErerGiTi~~~~~~----------~~~ 63 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRI---IQICGGLSDRE------MEAQVLDSMDLERERGITIKAQSVT----------LDY 63 (599)
T ss_dssp TEEEEEEECCC----CCHHHHH---HHHTTC--------------------------------CEEE----------EEE
T ss_pred CCeEEEEECCCCCCHHHHHHHH---HHhcCCccccc------ccccccccchhhhcccceeeeeEEE----------EEE
Confidence 3789999999999999999999 443 3332221 1356688888999999999664432 333
Q ss_pred CC----CCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 172 DT----IPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 172 ~~----~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
.. ...++++|+|||.+ .+..+ ..++.-+|+--. +|..+.+. ...+.+...+++.|+++||+|..+
T Consensus 64 ~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~-----~gv~~qt~-~~~~~~~~~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 64 KASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAG-----QGVEAQTL-ANCYTAMEMDLEVVPVLNKIDLPA 137 (599)
T ss_dssp ECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETT-----TCCCTHHH-HHHHHHHHTTCEEEEEEECTTSTT
T ss_pred ecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECC-----CCCCHHHH-HHHHHHHHCCCCEEEeeeccCccc
Confidence 21 12467999999976 11111 123333333210 11111111 123566778999999999999765
Q ss_pred C
Q psy9643 243 P 243 (412)
Q Consensus 243 ~ 243 (412)
.
T Consensus 138 a 138 (599)
T 3cb4_D 138 A 138 (599)
T ss_dssp C
T ss_pred c
Confidence 3
No 56
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.95 E-value=1.9e-10 Score=122.11 Aligned_cols=119 Identities=20% Similarity=0.231 Sum_probs=59.8
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY 171 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~ 171 (412)
...||+++||+|||||||+.+| ++. +.+..+. ..++++|.++.|+++||++.+.... +.|
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rL---l~~tg~i~~~~------~~~~~~D~~~~ErerGITI~~~~~~----------~~~ 65 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRL---LEYTGAISERE------KREQLLDTLDVERERGITVKMQAVR----------MFY 65 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHH---HHHHTC-----------------------------CCCCSEE----------EEE
T ss_pred CceEEEEECCCCCCHHHHHHHH---HhccCCccccc------ccccccccchhhhcccceeeeeEEE----------EEE
Confidence 3789999999999999999999 443 3332221 1356788888999999999765432 223
Q ss_pred CC----CCCccccCCCCCce---eEEEE--eeCCeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCCEEEEE
Q psy9643 172 DT----IPYFPVSTVPGHKG---QLVFG--LINGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLAT 235 (412)
Q Consensus 172 ~~----~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~ 235 (412)
.. ...++++|+|||.+ .+..+ ..++.-+|+- |++.|+ +.+...+++.|+++
T Consensus 66 ~~~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~-------------~~a~~~~ipiIvvi 132 (600)
T 2ywe_A 66 KAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANF-------------WKAVEQDLVIIPVI 132 (600)
T ss_dssp ECTTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHH-------------HHHHHTTCEEEEEE
T ss_pred EcCCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHH-------------HHHHHCCCCEEEEE
Confidence 21 12467899999976 11111 1233323321 223333 56677899999999
Q ss_pred eccCCCCC
Q psy9643 236 NAAGGLNP 243 (412)
Q Consensus 236 n~~G~l~~ 243 (412)
||+|..+.
T Consensus 133 NKiDl~~a 140 (600)
T 2ywe_A 133 NKIDLPSA 140 (600)
T ss_dssp ECTTSTTC
T ss_pred eccCcccc
Confidence 99997653
No 57
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.94 E-value=6.9e-11 Score=119.87 Aligned_cols=121 Identities=26% Similarity=0.374 Sum_probs=72.5
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccccccc-C-ce
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSIT-D-RH 167 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~-~-~~ 167 (412)
..++++||+++||+|||||||+++|++.. .++...|+++|||++.++..+.-... . ..
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~--------------------~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~ 65 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVW--------------------TDTHSEELRRGITIKIGFADAEIRRCPNCGR 65 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCC--------------------CC--CGGGGSCSSSCCEEEEEEEEECTTTCC
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCc--------------------cccChhhhcCCcEEEEeeeeeeccccccccc
Confidence 35679999999999999999999996431 12345577889999887654310000 0 00
Q ss_pred ee----------ecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEe---------cceeeeecCCCCccccHHHHHH
Q psy9643 168 IF----------PYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM---------QGRFHYYEGYPLWKCAMPIRVM 224 (412)
Q Consensus 168 ~~----------~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~---------qgr~H~yeg~~~~~v~~~i~ll 224 (412)
.. .|.....+.++|+|||.+ +++.|... ...++++ |+++|+ .++
T Consensus 66 y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-------------~~~ 132 (410)
T 1kk1_A 66 YSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-------------MAL 132 (410)
T ss_dssp EESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-------------HHH
T ss_pred ccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-------------HHH
Confidence 00 000113578899999975 34444321 1222222 233333 677
Q ss_pred HHcCCCEE-EEEeccCCCCC
Q psy9643 225 KLVGVTHL-LATNAAGGLNP 243 (412)
Q Consensus 225 ~~lGv~~I-I~~n~~G~l~~ 243 (412)
+.+|++.+ +++||+|..+.
T Consensus 133 ~~~~~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 133 QIIGQKNIIIAQNKIELVDK 152 (410)
T ss_dssp HHHTCCCEEEEEECGGGSCH
T ss_pred HHcCCCcEEEEEECccCCCH
Confidence 88898655 55999998654
No 58
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.90 E-value=2e-10 Score=119.15 Aligned_cols=111 Identities=22% Similarity=0.342 Sum_probs=61.9
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY 171 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~ 171 (412)
.+++||+++||+|||||||+++|++.. ..+..|+...++++|+|++.+...+ .+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~----------------~~~~~d~~~~e~~~GiTi~~~~~~~----------~~ 70 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIA----------------STSAHDKLPESQKRGITIDIGFSAF----------KL 70 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC------------------------------------CCCEE----------EE
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCC----------------cccccccccccccCccEEecceEEE----------EE
Confidence 348999999999999999999995421 0124566777889999997766432 22
Q ss_pred CCCCCccccCCCCCce---eEEEEeeC-CeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccC
Q psy9643 172 DTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAG 239 (412)
Q Consensus 172 ~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G 239 (412)
.. ..+.++|+|||.+ ++..+... ...++++ |+++|+ .+++.+|++.|++.||+|
T Consensus 71 ~~-~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-------------~~~~~~~ip~IvviNK~D 136 (482)
T 1wb1_A 71 EN-YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-------------LILDHFNIPIIVVITKSD 136 (482)
T ss_dssp TT-EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-------------HHHHHTTCCBCEEEECTT
T ss_pred CC-EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH-------------HHHHHcCCCEEEEEECCC
Confidence 22 3478899999975 33333211 1222222 344444 688889999999999999
Q ss_pred CCC
Q psy9643 240 GLN 242 (412)
Q Consensus 240 ~l~ 242 (412)
..+
T Consensus 137 l~~ 139 (482)
T 1wb1_A 137 NAG 139 (482)
T ss_dssp SSC
T ss_pred ccc
Confidence 865
No 59
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.72 E-value=4.3e-09 Score=105.54 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=61.7
Q ss_pred eEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCC
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIP 175 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~ 175 (412)
||+++||+|||||||+++|+ ++|+|++.++..+ .+. ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-------------------------------~~giTi~~~~~~~----------~~~-~~ 60 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-------------------------------KKGTSSDITMYNN----------DKE-GR 60 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-------------------------------EEEEESSSEEEEE----------CSS-SS
T ss_pred EEEEECCCCCCHHHHHHHHH-------------------------------hCCEEEEeeEEEE----------ecC-Ce
Confidence 99999999999999999992 5799987655332 222 23
Q ss_pred CccccCCCCCce---eEEEEeeC-CeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCCE-EEEEe-ccCC
Q psy9643 176 YFPVSTVPGHKG---QLVFGLIN-GIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVTH-LLATN-AAGG 240 (412)
Q Consensus 176 ~~~i~d~pGH~~---~l~~G~~~-g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~-II~~n-~~G~ 240 (412)
.+.++|+|||.+ ++..+.-. ...++++ |+++|+ .+++.+|++. |+++| |+|.
T Consensus 61 ~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd~~g~~~qt~e~~-------------~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 61 NMVFVDAHSYPKTLKSLITALNISDIAVLCIPPQGLDAHTGECI-------------IALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp EEEEEECTTTTTCHHHHHHHHHTCSEEEEEECTTCCCHHHHHHH-------------HHHHHTTCCEEEEEECCGGGS
T ss_pred EEEEEECCChHHHHHHHHHHHHHCCEEEEEEcCCCCcHHHHHHH-------------HHHHHcCCCeEEEEEEeccCC
Confidence 478999999976 33333211 1222222 233333 6788899999 77888 9987
No 60
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.72 E-value=4.9e-09 Score=113.47 Aligned_cols=130 Identities=20% Similarity=0.223 Sum_probs=75.3
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeee
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFP 170 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~ 170 (412)
+..+||+++||+|||||||+.+| ++. +..... .+++. -..++|....|+++||++.+....+ .
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~L---l~~~g~~~~~--g~v~~-g~~~~D~~~~E~~rgiTi~~~~~~~----------~ 71 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERI---LFYTGVNHKI--GEVHD-GAATMDWMEQEQERGITITSAATTA----------F 71 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHH---HHhcCCcccc--cccCC-CceeecChhhHHhcCceeeeceEEE----------E
Confidence 34789999999999999999999 432 222110 01111 1234566667889999997755332 2
Q ss_pred cCC------CCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccC
Q psy9643 171 YDT------IPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAG 239 (412)
Q Consensus 171 ~~~------~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G 239 (412)
|.. ...++++|+|||.+ .+..+ ..++.-+++ ... +|..+.. ....+.+...+++.++++||++
T Consensus 72 ~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVv-Da~----~gv~~qt-~~~~~~~~~~~ip~ilviNKiD 145 (704)
T 2rdo_7 72 WSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVY-CAV----GGVQPQS-ETVWRQANKYKVPRIAFVNKMD 145 (704)
T ss_pred ECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEE-eCC----CCCcHHH-HHHHHHHHHcCCCEEEEEeCCC
Confidence 222 14578999999975 11111 123333332 211 0111111 1123566778999999999999
Q ss_pred CCCC
Q psy9643 240 GLNP 243 (412)
Q Consensus 240 ~l~~ 243 (412)
..+.
T Consensus 146 ~~~~ 149 (704)
T 2rdo_7 146 RMGA 149 (704)
T ss_pred cccc
Confidence 7654
No 61
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.62 E-value=1.1e-08 Score=107.27 Aligned_cols=131 Identities=19% Similarity=0.182 Sum_probs=60.4
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhccc-cccchh-hHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeee
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSY-TYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFP 170 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~-~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~ 170 (412)
..+||+++||+|||||||+.+|+ +. +.+... ....-+.....++|..+.++++|+++.+... .+.
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll---~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~----------~~~ 78 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVL---LFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVM----------QFP 78 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHH---HSCC-------------------------------CCTTEE----------EEE
T ss_pred CCCEEEEECCCCChHHHHHHHHH---hhcCCccccceeecCccccceeeccchhcccCCcceeeeEE----------EEE
Confidence 47899999999999999999994 32 222110 0000001112345667788999999866443 233
Q ss_pred cCCCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643 171 YDTIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP 243 (412)
Q Consensus 171 ~~~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~ 243 (412)
|.. ..+.++|+|||.+ .+..+ ..++. ++++.... |..+. .......+...+++.++++||+|..+.
T Consensus 79 ~~~-~~i~liDTPG~~df~~~~~~~l~~aD~~-IlVvDa~~----g~~~~-t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 79 YHD-CLVNLLDTPGHEDFSEDTYRTLTAVDCC-LMVIDAAK----GVEDR-TRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp ETT-EEEEEECCCCSTTCCHHHHHGGGGCSEE-EEEEETTT----CSCHH-HHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred ECC-eEEEEEECCCChhHHHHHHHHHHHCCEE-EEEEeCCc----cchHH-HHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 332 2478999999975 11111 12222 22222110 11111 111224566679999999999997654
No 62
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.55 E-value=6.6e-08 Score=100.53 Aligned_cols=109 Identities=21% Similarity=0.249 Sum_probs=64.4
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCC
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDT 173 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~ 173 (412)
..+|+++||+|||||||+.+|++.- .......|||...+.+.+ .+..
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~-----------------------v~~~e~~GIT~~i~~~~v----------~~~~ 50 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTK-----------------------VASGEAGGITQHIGAYHV----------ETEN 50 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHH-----------------------HSBTTBCCCCCCSSCCCC----------CTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCC-----------------------CccccCCCeeEeEEEEEE----------EECC
Confidence 5689999999999999999993210 011223677776554332 2222
Q ss_pred CCCccccCCCCCce---eEEEEe--eCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 174 IPYFPVSTVPGHKG---QLVFGL--INGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 174 ~~~~~i~d~pGH~~---~l~~G~--~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
..+.+.|+|||.+ .+..|. .++. ++++... +|..+. ....+..++.++++.|++.||+|..+
T Consensus 51 -~~i~~iDTPGhe~f~~~~~~~~~~aD~a-ILVVda~----~g~~~q-T~e~l~~~~~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 51 -GMITFLDTPGHAAFTSMRARGAQATDIV-VLVVAAD----DGVMPQ-TIEAIQHAKAAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp -SCCCEECCCTTTCCTTSBCSSSBSCSSE-EEEEETT----TBSCTT-THHHHHHHHHTTCCEEEEEECSSSST
T ss_pred -EEEEEEECCCcHHHHHHHHHHHhhCCEE-EEEeecc----cCccHH-HHHHHHHHHhcCceEEEEEEeccccc
Confidence 3578999999976 222222 1222 2332110 011111 11123677889999888999999764
No 63
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.52 E-value=1.2e-08 Score=112.34 Aligned_cols=141 Identities=19% Similarity=0.225 Sum_probs=66.3
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCc--
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDR-- 166 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~-- 166 (412)
+.+..+||+++||+|||||||+.+| ++. +.+.... ......+|....|+++|||+++....+.-.....
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~L---l~~~g~i~~~~-----~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~ 86 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSL---VQRAGIISAAK-----AGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDV 86 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHH---HHHHBCCBC-----------------------CCCBCCCEEEEEEECCHHHH
T ss_pred CcccccEEEEECCCCCCHHHHHHHH---HHhcCCccccc-----CCCceeecCchhhhhcceeEeeceeEEEeccccccc
Confidence 3444789999999999999999999 443 3332211 1112346677788999999977543321000000
Q ss_pred eee--ecC-CCCCccccCCCCCce--eEEEE---eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEecc
Q psy9643 167 HIF--PYD-TIPYFPVSTVPGHKG--QLVFG---LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAA 238 (412)
Q Consensus 167 ~~~--~~~-~~~~~~i~d~pGH~~--~l~~G---~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~ 238 (412)
..+ ... ....++++|+|||.+ ..+.- ..++.-+|+ ... +|..+... ...+.+...++..|+++||+
T Consensus 87 ~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVv-Da~----~g~~~qt~-~~~~~~~~~~~p~ilviNK~ 160 (842)
T 1n0u_A 87 KEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVV-DTI----EGVCVQTE-TVLRQALGERIKPVVVINKV 160 (842)
T ss_dssp HHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEE-ETT----TBSCHHHH-HHHHHHHHTTCEEEEEEECH
T ss_pred ccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEE-eCC----CCCCHHHH-HHHHHHHHcCCCeEEEEECC
Confidence 000 000 012468899999976 00111 123332332 211 11111111 11245556799999999999
Q ss_pred CCCCCC
Q psy9643 239 GGLNPD 244 (412)
Q Consensus 239 G~l~~~ 244 (412)
|..+.+
T Consensus 161 D~~~~e 166 (842)
T 1n0u_A 161 DRALLE 166 (842)
T ss_dssp HHHHHT
T ss_pred Ccchhh
Confidence 976433
No 64
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.48 E-value=4.7e-08 Score=105.53 Aligned_cols=128 Identities=20% Similarity=0.232 Sum_probs=59.6
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY 171 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~ 171 (412)
...||+++||+|||||||+.+|+ +. +.... ..+++. ...++|....|+++|+++++.... +.+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll---~~~g~~~~--~g~v~~-~~~~~d~~~~E~~~giTi~~~~~~----------~~~ 74 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERIL---YYTGRIHK--IGEVHE-GAATMDFMEQERERGITITAAVTT----------CFW 74 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHH---HHHCC-------------------------------CCEEE----------EEE
T ss_pred cccEEEEECCCCCCHHHHHHHHH---HhcCCCcc--cceecC-CceeccCchhhhhcccccccceEE----------EEE
Confidence 37899999999999999999994 32 22111 111211 134567777889999999765432 233
Q ss_pred CCCCCccccCCCCCce--eEEEE---eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643 172 DTIPYFPVSTVPGHKG--QLVFG---LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP 243 (412)
Q Consensus 172 ~~~~~~~i~d~pGH~~--~l~~G---~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~ 243 (412)
.. ..+.++|+|||.+ ....- ..++. ++++.... |..... ....+.+...+++.++++||+|..+.
T Consensus 75 ~~-~~i~liDTPG~~df~~~~~~~l~~aD~~-ilVvDa~~----g~~~~t-~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 75 KD-HRINIIDTPGHVDFTIEVERSMRVLDGA-IVVFDSSQ----GVEPQS-ETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TT-EEEEEECCCSSTTCHHHHHHHHHHCSEE-EEEEETTT----CSCHHH-HHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred CC-eEEEEEECcCccchHHHHHHHHHHCCEE-EEEEECCC----Ccchhh-HHHHHHHHHcCCCEEEEEECCCcccC
Confidence 22 2468899999965 11110 12222 22322110 111111 11235677789999999999997653
No 65
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.41 E-value=2.5e-08 Score=104.51 Aligned_cols=127 Identities=21% Similarity=0.284 Sum_probs=71.1
Q ss_pred eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH---HHHHHhhhcCCCCceeEeeCcCcccccccccCceee
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS---IAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIF 169 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~---~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~ 169 (412)
..||+++||.|+|||||+.+| ++. +.+.. ...+.. ......|....++++|+++.+... .+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~L---l~~~g~i~~--~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~----------~~ 77 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKL---LLFGGAIQL--AGTIKSRKAARHATSDWMELEKQRGISVTTSVM----------QF 77 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHH---HHHTTCHHH--HHHHHTC----CCHHHHHHHHHHHCCSSSSSEE----------EE
T ss_pred CCEEEEECCCCCcHHHHHHHH---HhhcCCccc--ceeeeccccccceecccchhhhcCCeeEEEeEE----------EE
Confidence 789999999999999999999 443 32211 111111 011234444556788998866443 23
Q ss_pred ecCCCCCccccCCCCCce--eEEEE---eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643 170 PYDTIPYFPVSTVPGHKG--QLVFG---LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242 (412)
Q Consensus 170 ~~~~~~~~~i~d~pGH~~--~l~~G---~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~ 242 (412)
.+.. ..+.++|+|||.+ ....- ..++. ++++.... |..... ......+...++..++++||+|..+
T Consensus 78 ~~~~-~~i~liDTPG~~df~~~~~~~l~~aD~a-llVvDa~~----g~~~~t-~~~~~~~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 78 PYKD-YLINLLDTPGHADFTEDTYRTLTAVDSA-LMVIDAAK----GVEPRT-IKLMEVCRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp EETT-EEEEEECCCCSTTCCHHHHHGGGGCSEE-EEEEETTT----CSCHHH-HHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred EeCC-EEEEEEECCCchhHHHHHHHHHHhCCEE-EEEEeCCC----CCCHHH-HHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 3332 2468999999976 11111 12222 22322110 111111 1122567778999999999998754
No 66
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.30 E-value=3.2e-07 Score=99.07 Aligned_cols=129 Identities=22% Similarity=0.256 Sum_probs=60.4
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD 172 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~ 172 (412)
...||+++||+|||||||+.+|++. .+..... ..+.. ....+|....++++|+++++.... +.+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~--~~~~~~~--g~v~~-~~~~~D~~~~e~~~giTi~~~~~~----------~~~~ 73 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYY--TGRIHKI--GETHE-GASQMDWMEQEQDRGITITSAATT----------AAWE 73 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHH--HSSCC----------------------------CCSEEE----------EEET
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh--cCCcccc--ccccC-CceecccchhhhhcCceEeeeeEE----------EEEC
Confidence 3789999999999999999999421 1221110 11111 124466667788999999765432 2333
Q ss_pred CCCCccccCCCCCce--eEEEE---eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643 173 TIPYFPVSTVPGHKG--QLVFG---LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP 243 (412)
Q Consensus 173 ~~~~~~i~d~pGH~~--~l~~G---~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~ 243 (412)
. ..+.++|+|||.+ ..+.- ..++. ++++.... |...... ...+.+...++..++++||+|..+.
T Consensus 74 ~-~~i~liDTPG~~df~~~~~~~l~~aD~~-llVvDa~~----g~~~~~~-~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 74 G-HRVNIIDTPGHVDFTVEVERSLRVLDGA-VTVLDAQS----GVEPQTE-TVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp T-EEEEEECCCCCSSCCHHHHHHHHHCSEE-EEEEETTT----BSCHHHH-HHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred C-eeEEEEECcCCcchHHHHHHHHHHCCEE-EEEECCCC----CCcHHHH-HHHHHHHHcCCCEEEEEECCCcccc
Confidence 2 2468899999975 00000 12222 22222110 1111111 1235667789999999999997653
No 67
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.27 E-value=2.7e-07 Score=93.21 Aligned_cols=28 Identities=61% Similarity=0.897 Sum_probs=24.6
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhhh
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
..++++||+++||+|||||||+.+|++.
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 3566899999999999999999999653
No 68
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.11 E-value=5.5e-07 Score=94.37 Aligned_cols=112 Identities=23% Similarity=0.202 Sum_probs=62.1
Q ss_pred eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI 174 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~ 174 (412)
..|+++||+|||||||+.+|++.- +. .....|++...+...+ .+..-
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~------------~~-----------~~~~~giT~~i~~~~v----------~~~~g 51 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQ------------VA-----------AMEAGGITQHIGAFLV----------SLPSG 51 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHH------------HH-----------HSSSCCBCCCTTSCCB----------CSSCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC------------cc-----------cccCCceeEEEeEEEE----------EeCCC
Confidence 457899999999999999994310 00 0123466654444322 22222
Q ss_pred CCccccCCCCCce--eEEEEeeCCe--EEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC
Q psy9643 175 PYFPVSTVPGHKG--QLVFGLINGI--PIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD 244 (412)
Q Consensus 175 ~~~~i~d~pGH~~--~l~~G~~~g~--~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~ 244 (412)
..+.+.|+|||.+ .+..-.+... .++++.... |..+. ....+..++.+|++.|++.||+|..+.+
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d----g~~~q-t~e~l~~~~~~~vPiIVViNKiDl~~~~ 120 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD----GVMKQ-TVESIQHAKDAHVPIVLAINKCDKAEAD 120 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS----CCCHH-HHHHHHHHHTTTCCEEECCBSGGGTTTS
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC----CccHH-HHHHHHHHHHcCCcEEEEEecccccccc
Confidence 3578999999975 2222112222 233321110 11111 1112367888999988889999976543
No 69
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.05 E-value=1.4e-06 Score=92.49 Aligned_cols=22 Identities=50% Similarity=0.714 Sum_probs=20.2
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..+|+++||+|||||||+.+|+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~ 26 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIR 26 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCcHHHHHHHHh
Confidence 4689999999999999999994
No 70
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.93 E-value=1e-06 Score=94.65 Aligned_cols=123 Identities=14% Similarity=0.122 Sum_probs=66.2
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhcc---c-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCcee
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLM---E-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHI 168 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~---~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~ 168 (412)
+..||+++||+|||||||+.+|++... . |.+.. -..+.+....++++||++.+.. ..
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~---------g~~~~d~~~~e~~~giti~~~~----------~~ 68 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEE---------GTTTTDYTPEAKLHRTTVRTGV----------AP 68 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGG---------TCCSSCCSHHHHHTTSCCSCEE----------EE
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecC---------CcccccCCHHHHhcCCeEEecc----------eE
Confidence 478999999999999999999964322 1 21100 0112222223445666663321 12
Q ss_pred eecCCCCCccccCCCCCce--e-EEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643 169 FPYDTIPYFPVSTVPGHKG--Q-LVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241 (412)
Q Consensus 169 ~~~~~~~~~~i~d~pGH~~--~-l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l 241 (412)
+.+. ...+++.|+|||.+ . +... ..++ .++++... +|..+... ..++.+...|+..|+++|+++..
T Consensus 69 ~~~~-~~~~nliDTpG~~~f~~~~~~~l~~ad~-~ilVvD~~----~g~~~qt~-~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 69 LLFR-GHRVFLLDAPGYGDFVGEIRGALEAADA-ALVAVSAE----AGVQVGTE-RAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEET-TEEEEEEECCCSGGGHHHHHHHHHHCSE-EEEEEETT----TCSCHHHH-HHHHHHHHTTCCEEEEEECGGGC
T ss_pred EeeC-CEEEEEEeCCCccchHHHHHHHHhhcCc-EEEEEcCC----cccchhHH-HHHHHHHHccCCEEEEecCCchh
Confidence 2222 22468899999976 1 1111 1222 23333211 11111111 12366777899999999999865
No 71
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.46 E-value=7.4e-05 Score=76.01 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=60.3
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY 171 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~ 171 (412)
...+||+++||+++|||||+.+|++ .. +. ..+...|++... ....+.+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~---~~------~~-------------~~~~~~gtT~d~----------~~~~~~~ 79 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVG---QN------VS-------------IVSDYAGTTTDP----------VYKSMEL 79 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-----------------------------------CCC----------CEEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHc---CC------CC-------------ccCCCCCeeeee----------EEEEEEE
Confidence 3478999999999999999999932 10 00 012234454422 1122333
Q ss_pred CCCCCccccCCCCCceeEEEE---------eeCCeE--EEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCC
Q psy9643 172 DTIPYFPVSTVPGHKGQLVFG---------LINGIP--IMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG 240 (412)
Q Consensus 172 ~~~~~~~i~d~pGH~~~l~~G---------~~~g~~--vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~ 240 (412)
.....+.++|+|||.+.--.+ .+.+.. ++++... ........+..++..+++.+++.||+|.
T Consensus 80 ~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~-------~~~~~~~~l~~l~~~~~piIvV~NK~Dl 152 (423)
T 3qq5_A 80 HPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSA-------PTPYEDDVVNLFKEMEIPFVVVVNKIDV 152 (423)
T ss_dssp TTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSS-------CCHHHHHHHHHHHHTTCCEEEECCCCTT
T ss_pred CCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCC-------ChHHHHHHHHHHHhcCCCEEEEEeCcCC
Confidence 333357889999996410000 112222 2232220 0111112345677789999999999998
Q ss_pred CCCC
Q psy9643 241 LNPD 244 (412)
Q Consensus 241 l~~~ 244 (412)
.+..
T Consensus 153 ~~~~ 156 (423)
T 3qq5_A 153 LGEK 156 (423)
T ss_dssp TTCC
T ss_pred CCcc
Confidence 7654
No 72
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.68 E-value=0.0011 Score=58.84 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.0
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+++.++|+++|+.++|||||+.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHc
Confidence 45689999999999999999999943
No 73
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.62 E-value=0.00082 Score=63.24 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=22.5
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..+.++|+++||+++|||||+.+|+
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~ 57 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLI 57 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHh
Confidence 3458999999999999999999994
No 74
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.53 E-value=0.0013 Score=56.63 Aligned_cols=25 Identities=48% Similarity=0.647 Sum_probs=21.8
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+...+|+++|..++|||||+.+|++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3468899999999999999999943
No 75
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.53 E-value=0.002 Score=55.67 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++.++|+++|+.++|||||+.+|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 4478999999999999999999943
No 76
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.43 E-value=0.0029 Score=59.64 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.5
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..+.++|+++|+.++|||||+.+|+
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~ 60 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSII 60 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHh
Confidence 4558999999999999999999994
No 77
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.31 E-value=0.002 Score=61.24 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=21.2
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.++|+++|+.++|||||..+|++
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 57999999999999999999954
No 78
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.26 E-value=0.0034 Score=54.96 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=21.4
Q ss_pred CCeeeEEeeecccCCChhhhhHH
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l 114 (412)
++.++|+++|+.++|||||+.++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l 42 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRL 42 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHH
Confidence 45799999999999999999999
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.13 E-value=0.0053 Score=53.89 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=21.4
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHh
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
...++.+|+++|+.++|||||+.+|+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 34558899999999999999999994
No 80
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.09 E-value=0.0013 Score=66.76 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.6
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..++|+++||.++|||||+.+|++
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~ 197 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLG 197 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhC
Confidence 468999999999999999999943
No 81
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.07 E-value=0.0017 Score=58.58 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.3
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..++|+++|+.++|||||+.+|++
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 367899999999999999999943
No 82
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.06 E-value=0.0016 Score=58.86 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.7
Q ss_pred CCCeeeEEeeecccCCChhhhhHH
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l 114 (412)
....++|+++|+.++|||||+.++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~ 35 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRH 35 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTB
T ss_pred cccceEEEEECCCCCCHHHHHHHH
Confidence 455899999999999999999996
No 83
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.98 E-value=0.0034 Score=55.35 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++.++|+++|..++|||||+.+|++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECcCCCCHHHHHHHHhc
Confidence 3478999999999999999999943
No 84
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.96 E-value=0.0027 Score=55.69 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.9
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+..++|+++|..++|||||+.+|++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Confidence 3468999999999999999999943
No 85
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.95 E-value=0.0025 Score=55.90 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.7
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+..++|+++|+.++|||||+.+|+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHH
Confidence 447899999999999999999994
No 86
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.78 E-value=0.0039 Score=55.35 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.5
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
...++|+++|+.++|||||+.+|+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSB
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 347899999999999999999993
No 87
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.57 E-value=0.012 Score=49.79 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.3
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.++|+++|+.++|||||+.+++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 5789999999999999999993
No 88
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=95.39 E-value=0.011 Score=59.16 Aligned_cols=94 Identities=40% Similarity=0.665 Sum_probs=60.0
Q ss_pred cCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCCCCC---ccCccc--cchhhccccccccccccccc
Q psy9643 7 DAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIG---IIPLYP--NDKFEINKLNVFVPLINSRR 80 (412)
Q Consensus 7 d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~ 80 (412)
|+. +++.++.++.|++++|.++||++++.|++..||+.+.++.++.|+ ++.++. .+.+..++++ .++++
T Consensus 130 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~-----~~~p~ 204 (397)
T 1d2e_A 130 DAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRD-----LEKPF 204 (397)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCC-----TTSCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCC-----CCCcE
Confidence 885 788999999999999999999988999999999998765444342 333332 2222222222 34456
Q ss_pred hhhhhccccCCCCeeeEEeeecccCCC
Q psy9643 81 GYAEKQVYSRDKPHCNIGTIGHVDHGK 107 (412)
Q Consensus 81 ~~~~~~~~~~~k~~~ni~~igHVD~GK 107 (412)
.|++.+++.-. ..-.++.|-|-+|+
T Consensus 205 ~~~v~~v~~~~--~~G~v~~g~v~~G~ 229 (397)
T 1d2e_A 205 LLPVESVYSIP--GRGTVVTGTLERGI 229 (397)
T ss_dssp EEECCEEEEET--TTEEEEEEECCBSE
T ss_pred EEEEEEEEEeC--CceEEEEEEEeece
Confidence 66666655422 12223556666653
No 89
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.36 E-value=0.0021 Score=62.22 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.-+.--|+++|+.++|||||+.+|++
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhC
Confidence 34567889999999999999999954
No 90
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=95.35 E-value=0.012 Score=57.32 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.5
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+..++|+++|+.++|||||+.+|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~ 186 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLK 186 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTC
T ss_pred cCcceEEEECCCCccHHHHHHHHh
Confidence 447899999999999999999993
No 91
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.82 E-value=0.011 Score=60.31 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.2
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+...++|+++|+.++|||||+.+|+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~ 216 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAML 216 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHh
Confidence 3457899999999999999999994
No 92
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=94.55 E-value=0.066 Score=54.72 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+..++|+++|..++|||||..+|++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~ 344 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKL 344 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhc
Confidence 4478999999999999999999943
No 93
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.36 E-value=0.017 Score=53.73 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.5
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.++.++|+++||.++|||||+.+|+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSIL 43 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHh
Confidence 4457899999999999999999994
No 94
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=94.10 E-value=0.049 Score=55.98 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.7
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..++|+++|+.++|||||+.+|+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~ 254 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLL 254 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 35789999999999999999994
No 95
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=93.65 E-value=0.03 Score=56.01 Aligned_cols=41 Identities=56% Similarity=0.915 Sum_probs=37.3
Q ss_pred cCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhc
Q psy9643 7 DAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE 47 (412)
Q Consensus 7 d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~ 47 (412)
|+. +++.++.++.|++++|.++||++++.|++..||+...+
T Consensus 139 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 139 DMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 885 78889999999999999999998889999999998864
No 96
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.60 E-value=0.025 Score=50.43 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=20.5
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+++..++|+++|+.++|||||+.++++
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 355688999999999999999999943
No 97
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.51 E-value=0.034 Score=48.30 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.9
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
++.++|+++|+.++|||||+.+|++.
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999999653
No 98
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.40 E-value=0.033 Score=47.65 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+++.++|+++|+.++|||||+.+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHh
Confidence 45589999999999999999999943
No 99
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.38 E-value=0.029 Score=47.93 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=22.5
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+.+.++|+++|+.++|||||+.+++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHH
T ss_pred ccceeEEEEECCCCCCHHHHHHHHH
Confidence 4557999999999999999999994
No 100
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.36 E-value=0.037 Score=48.31 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=23.0
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+.+.++|+++|+.++|||||+.+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHc
Confidence 45579999999999999999999953
No 101
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.31 E-value=0.038 Score=48.55 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.5
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHh
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+..+.++|+++|+.++|||||+.+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHH
Confidence 34558999999999999999999994
No 102
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=93.22 E-value=0.031 Score=63.26 Aligned_cols=93 Identities=35% Similarity=0.474 Sum_probs=57.8
Q ss_pred cCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCCCC-CccCccc--cchhhccccccccccccccchh
Q psy9643 7 DAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEI-GIIPLYP--NDKFEINKLNVFVPLINSRRGY 82 (412)
Q Consensus 7 d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 82 (412)
|+. +++.++.++.|++++|.++||++++.|++..||+...++.++|+ |++.++. .+.+..+.++ .++++.|
T Consensus 423 DLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~-----~d~Pfr~ 497 (1289)
T 3avx_A 423 DMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA-----IDKPFLL 497 (1289)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCG-----GGSCCEE
T ss_pred ccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccc-----cccceee
Confidence 885 68889999999999999999998999999999998866432221 3333332 1222222222 3455566
Q ss_pred hhhccccCCCCeeeEEeeecccCC
Q psy9643 83 AEKQVYSRDKPHCNIGTIGHVDHG 106 (412)
Q Consensus 83 ~~~~~~~~~k~~~ni~~igHVD~G 106 (412)
++.+++.-. .+-.++.|-|-+|
T Consensus 498 pId~Vf~i~--G~GtVvtGrV~sG 519 (1289)
T 3avx_A 498 PIEDVFSIS--GRGTVVTGRVERG 519 (1289)
T ss_dssp ECCEEEEET--TTEEEEEEECCBS
T ss_pred ecccccccc--CCcEEEEEEEecc
Confidence 666665422 1222344555555
No 103
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.21 E-value=0.04 Score=47.50 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.1
Q ss_pred cCCCCeeeEEeeecccCCChhhhhHHh
Q psy9643 89 SRDKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 89 ~~~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
....+.++|+++|+.++|||||+.+|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHH
Confidence 345568999999999999999999994
No 104
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.18 E-value=0.037 Score=48.30 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.+..++|+++|+.++|||||+.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhc
Confidence 34478999999999999999999943
No 105
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.11 E-value=0.032 Score=53.59 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.5
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..+|+++||.++|||||+.+|++
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45799999999999999999954
No 106
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=93.09 E-value=0.052 Score=56.25 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...++|+++|..++|||||..++++
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~ 63 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIG 63 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC
T ss_pred ccceEEEEECCCCCCHHHHHHHHhc
Confidence 3478999999999999999999953
No 107
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.03 E-value=0.041 Score=46.10 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.5
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.++|+++|+.++|||||+.+++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 6899999999999999999994
No 108
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.98 E-value=0.051 Score=46.38 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.6
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..++|+++|+.++|||||+.+|++
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999999943
No 109
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.90 E-value=0.044 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=21.1
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+.++|+++|+.++|||||+.+|+
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999999994
No 110
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.59 E-value=0.044 Score=55.66 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.2
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..+|+++|+.++|||||..+|++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35789999999999999999943
No 111
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.58 E-value=0.021 Score=57.70 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.3
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
..|+++|+.++|||||..+|+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~ 24 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIA 24 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHE
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999994
No 112
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.55 E-value=0.052 Score=45.63 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.9
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.++|+++|+.++|||||+.++++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999999943
No 113
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.50 E-value=0.066 Score=45.69 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.++.++|+++|+.++|||||+.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEEECcCCCCHHHHHHHHH
Confidence 3457999999999999999999994
No 114
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.49 E-value=0.047 Score=45.98 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=21.0
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
++++|+++|+.++|||||+.+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHh
Confidence 36899999999999999999994
No 115
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.39 E-value=0.053 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.6
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++|+++||.++|||||+.+|++.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 579999999999999999999653
No 116
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.33 E-value=0.058 Score=45.40 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.6
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..++|+++|+.++|||||+.+|++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 378999999999999999999943
No 117
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.32 E-value=0.053 Score=46.49 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=21.2
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+..++|+++|+.++|||||+.+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHh
Confidence 347899999999999999999994
No 118
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.28 E-value=0.059 Score=45.76 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=21.2
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+.++|+++|+.++|||||+.+|+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEEECCCCccHHHHHHHHh
Confidence 47899999999999999999994
No 119
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.14 E-value=0.062 Score=46.08 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.4
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..+.++|+++|+.++|||||+.+|+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHh
Confidence 3457999999999999999999994
No 120
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.12 E-value=0.06 Score=46.96 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.8
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHh
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..|+.++|+++|+.++|||||+.+|+
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHH
Confidence 35668999999999999999999994
No 121
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.07 E-value=0.069 Score=44.54 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.7
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.++|+++|+.++|||||+.++++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999999943
No 122
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.00 E-value=0.091 Score=47.13 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
++..-|+++|..++|||||+..|.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999997654
No 123
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.97 E-value=0.069 Score=46.03 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.0
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...++|+++|+.++|||||+.+|++
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 3478999999999999999999943
No 124
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.95 E-value=0.067 Score=46.26 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.0
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.++|+++|+.++|||||+.+|++
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 67999999999999999999954
No 125
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.95 E-value=0.059 Score=45.46 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=21.6
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+.++|+++|+.++|||||+.+|++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999999943
No 126
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.95 E-value=0.062 Score=46.25 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++.++|+++|+.++|||||+.+|++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh
Confidence 3478999999999999999999943
No 127
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.85 E-value=0.061 Score=45.84 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.7
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.+.++|+++|+.++|||||+.+|+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 347899999999999999999993
No 128
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.83 E-value=0.052 Score=45.69 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.6
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++++|+++|+.++|||||+.+|++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999999943
No 129
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.82 E-value=0.064 Score=46.10 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.8
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
++.++|+++|+.++|||||+.+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 457999999999999999999993
No 130
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.76 E-value=0.082 Score=44.68 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.6
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
++.++|+++|+.++|||||+.+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 447899999999999999999994
No 131
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.74 E-value=0.07 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.7
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
++.++|+++|+.++|||||+.+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHH
Confidence 447899999999999999999994
No 132
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.68 E-value=0.083 Score=45.84 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.9
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
++.++|+++|+.++|||||+.+|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 457999999999999999999994
No 133
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.65 E-value=0.077 Score=44.70 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.9
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.++|+++|+.++|||||+.+|++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999999943
No 134
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.63 E-value=0.072 Score=49.42 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=22.1
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.+.+.++|+++|+.++|||||+.+|++
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhC
Confidence 345689999999999999999999943
No 135
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.61 E-value=0.077 Score=45.10 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...++|+++|+.++|||||+.+|++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc
Confidence 3478999999999999999999943
No 136
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.57 E-value=0.077 Score=45.53 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=21.1
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..++|+++|+.++|||||+.+++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999999994
No 137
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.56 E-value=0.074 Score=45.49 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.8
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..+.++|+++|+.++|||||+.+|+
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHH
T ss_pred CccceEEEEECcCCCCHHHHHHHHH
Confidence 4457899999999999999999994
No 138
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.54 E-value=0.074 Score=45.99 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.5
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
++.++|+++|+.++|||||+.+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFN 39 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHh
Confidence 457999999999999999999994
No 139
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.46 E-value=0.081 Score=46.00 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=21.4
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
++.++|+++|+.++|||||+.+|+
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHH
Confidence 447999999999999999999994
No 140
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.38 E-value=0.082 Score=44.93 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=21.1
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+.++|+++|+.++|||||+.+|+
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999994
No 141
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.30 E-value=0.096 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.6
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+..++|+++|+.++|||||+.+|+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHH
Confidence 347899999999999999999994
No 142
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.26 E-value=0.085 Score=46.62 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.7
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
...++|+++|+.++|||||+.+|+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHH
Confidence 447999999999999999999994
No 143
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.18 E-value=0.095 Score=45.42 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=21.9
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++..++|+++|..++|||||+.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhc
Confidence 45589999999999999999999943
No 144
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.15 E-value=0.088 Score=48.11 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.9
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...++|+++|+.++|||||+.+|++
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC
Confidence 4478999999999999999999954
No 145
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.05 E-value=0.098 Score=46.80 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=22.0
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHh
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..++.++|+++|..++|||||+.+|+
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHH
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHH
Confidence 34558999999999999999999994
No 146
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.01 E-value=0.087 Score=46.38 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=21.3
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.+..++|+++|+.++|||||+.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 34479999999999999999999943
No 147
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.95 E-value=0.11 Score=45.17 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=21.2
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
...+|+++|+.++|||||+.+|+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999999994
No 148
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.91 E-value=0.084 Score=45.31 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.2
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..++|+++|+.++|||||+.+++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999999994
No 149
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.87 E-value=0.095 Score=45.29 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.8
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.+.++|+++|+.++|||||+.+|+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~ 42 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFS 42 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHh
Confidence 347899999999999999999994
No 150
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.86 E-value=0.11 Score=43.75 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=20.5
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.++|+++|+.++|||||+.+|+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 5899999999999999999994
No 151
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.84 E-value=0.087 Score=46.57 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=20.2
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
+++++|..++|||||...|++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999996643
No 152
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.75 E-value=0.11 Score=46.54 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.6
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
..+|+++|+.++|||||+.+|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999999654
No 153
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.72 E-value=0.1 Score=44.48 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.7
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...|+++|+.++|||||+.+|++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999954
No 154
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.67 E-value=0.11 Score=45.29 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=22.7
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..+.++|+++|+.++|||||+.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhc
Confidence 44578999999999999999999943
No 155
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.63 E-value=0.1 Score=45.64 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++.++|+++|+.++|||||+.+|++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3478999999999999999999943
No 156
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.59 E-value=0.12 Score=45.47 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.6
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
++.++|+++|+.++|||||+.+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 447899999999999999999993
No 157
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.49 E-value=0.1 Score=45.47 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+.+..++|+++|+.++|||||+.++++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhc
Confidence 455689999999999999999999943
No 158
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.41 E-value=0.11 Score=46.04 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=20.9
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+++.++|+++|+.++|||||+.+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~ 51 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYT 51 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHH
Confidence 4558999999999999999999994
No 159
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.37 E-value=0.11 Score=45.58 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=19.9
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
++..+|+++|+.++|||||+.+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 446799999999999999999994
No 160
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.36 E-value=0.11 Score=49.07 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.1
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
..|++++|..++|||||+..|++.+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999997654
No 161
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.29 E-value=0.11 Score=46.16 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.6
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
...++|+++|+.++|||||+.+|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~ 46 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYT 46 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHh
Confidence 347899999999999999999994
No 162
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.29 E-value=0.13 Score=45.37 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=21.8
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++.++|+++|..++|||||+.+|++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHh
Confidence 4489999999999999999999943
No 163
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.22 E-value=0.11 Score=45.04 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.5
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+.++|+++|+.++|||||+.+|++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEECcCCCCHHHHHHHHHc
Confidence 468999999999999999999943
No 164
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=90.21 E-value=0.076 Score=47.31 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=21.4
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.+..++|+++|+.++|||||+.+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCT
T ss_pred ccCccEEEEECCCCCCHHHHHHHHh
Confidence 4458999999999999999999994
No 165
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.16 E-value=0.11 Score=45.49 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=20.9
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.++.++|+++|+.++|||||+.+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcceEEEEECCCCCCHHHHHHHHH
Confidence 4458999999999999999999994
No 166
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.15 E-value=0.15 Score=45.08 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.8
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
++.++|+++|+.++|||||+.+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~ 30 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYT 30 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHh
Confidence 457999999999999999999994
No 167
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.10 E-value=0.11 Score=44.68 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=12.4
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
...++|+++|+.++|||||+.+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp SEEEEEEEECCCCC----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 347899999999999999999994
No 168
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.08 E-value=0.11 Score=44.78 Aligned_cols=25 Identities=28% Similarity=0.058 Sum_probs=21.2
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.+..++|+++|+.++|||||+..|.
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHH
Confidence 3447999999999999999996663
No 169
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.07 E-value=0.1 Score=45.35 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.8
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.+.++|+++|+.++|||||+.+|+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~ 42 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLK 42 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTS
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 347899999999999999999994
No 170
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.04 E-value=0.12 Score=44.84 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.5
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+.++|+++|+.++|||||+.+|++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999999999943
No 171
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.02 E-value=0.14 Score=45.08 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.9
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...++|+++|+.++|||||+.+|++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3478999999999999999999943
No 172
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.99 E-value=0.13 Score=45.83 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.1
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++...+|+++|+.++|||||+.+|++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34478999999999999999999953
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.95 E-value=0.094 Score=46.33 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.7
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...|+++|+.++|||||..+|++
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 56899999999999999999954
No 174
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.85 E-value=0.14 Score=45.68 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=20.6
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
..-|+++|..++|||||+..|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999654
No 175
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.84 E-value=0.12 Score=43.27 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=19.3
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
++|+++|+.++|||||+.+++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999994
No 176
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.75 E-value=0.13 Score=44.91 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=21.1
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..++|+++|+.++|||||+.+|+
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999999993
No 177
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.74 E-value=0.17 Score=43.87 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.2
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.+..++|+++|..++|||||+.+++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHh
Confidence 3557899999999999999999993
No 178
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.71 E-value=0.14 Score=45.40 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=21.0
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.++|+++|+.++|||||+.+|++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 68999999999999999999943
No 179
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=89.71 E-value=0.13 Score=48.16 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.7
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..++|+++|+.++|||||..+|++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHC
Confidence 368999999999999999999964
No 180
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.68 E-value=0.11 Score=45.31 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=21.7
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..++|+++|+.++|||||+.++++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999943
No 181
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.48 E-value=0.14 Score=44.09 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.8
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++|+++|+.++|||||+.++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999943
No 182
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.37 E-value=0.14 Score=44.00 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.7
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.+|+++|..++||||++..|.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999996643
No 183
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.35 E-value=0.15 Score=44.69 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=21.0
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.++|+++|+.++|||||+.+|++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999999943
No 184
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.31 E-value=0.14 Score=44.52 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.0
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
--++++|..++|||||++.|++.+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 347899999999999999997765
No 185
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.11 E-value=0.16 Score=43.99 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++.++|+++|..++|||||+.+|++
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4468999999999999999999954
No 186
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.09 E-value=0.14 Score=45.09 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=19.4
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
-|+++|..++|||||+..|++.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4799999999999999999653
No 187
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.03 E-value=0.16 Score=44.64 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.4
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.+.|+++|..++|||||+.+|++.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 578999999999999999999653
No 188
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.02 E-value=0.19 Score=43.25 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.6
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
...|+++|..++||||++..|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457899999999999999999553
No 189
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.02 E-value=0.19 Score=43.34 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.1
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...+|+++|+.++|||||+.+|++
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHc
Confidence 357899999999999999999943
No 190
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.01 E-value=0.18 Score=44.87 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=22.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...++|+++|..++|||||+.+|++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHh
Confidence 3478999999999999999999943
No 191
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.93 E-value=0.18 Score=44.53 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
++..+|+++|+.++|||||+.+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 346789999999999999999993
No 192
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.89 E-value=0.15 Score=45.68 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=19.9
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
-++++|..++|||||...|++.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 36899999999999999997643
No 193
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.73 E-value=0.17 Score=44.54 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=20.7
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.+.++|+++|+.++|||||+.+|+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHH
Confidence 346899999999999999999994
No 194
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=88.71 E-value=0.17 Score=47.50 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=20.3
Q ss_pred eeeEEeeecccCCChhhhhHH
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l 114 (412)
.+||+++|+.++|||||+.+|
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L 28 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSL 28 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHH
Confidence 689999999999999999998
No 195
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.70 E-value=0.21 Score=42.61 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=22.2
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.+.++|+++|..++|||||+.++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999999943
No 196
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.52 E-value=0.2 Score=43.68 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=21.9
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++...++|+++|..++|||||+.++++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHh
Confidence 345589999999999999999999943
No 197
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.41 E-value=0.18 Score=44.70 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.4
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.-.|+++|-.++||||++..|.+.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999996543
No 198
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.39 E-value=0.21 Score=44.03 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.4
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..++|+++|+.++|||||+.++++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999999943
No 199
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=88.29 E-value=0.2 Score=48.06 Aligned_cols=23 Identities=22% Similarity=0.331 Sum_probs=20.5
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..+|+++||.++|||||+.+|++
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 56799999999999999999943
No 200
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.26 E-value=0.19 Score=42.35 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.1
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.++|+++|..++|||||+.+++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999994
No 201
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=88.20 E-value=0.2 Score=44.97 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...++|+++|+.++|||||+.+|++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHH
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhc
Confidence 3478999999999999999999943
No 202
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.20 E-value=0.2 Score=41.72 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.7
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.+|+++|..++|||||+.++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999943
No 203
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.12 E-value=0.19 Score=43.69 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.5
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..++|+++|+.++|||||+.+|++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhc
Confidence 468999999999999999999943
No 204
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.04 E-value=0.22 Score=43.93 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=21.5
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+..++|+++|+.++|||||+.+|+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~ 50 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFK 50 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHh
Confidence 337899999999999999999994
No 205
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=87.97 E-value=0.21 Score=44.21 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.5
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
+|+++|..++||||++..|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999976
No 206
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=87.87 E-value=0.24 Score=43.17 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.4
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
-.|+++|..++||||++..|++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999765
No 207
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=87.87 E-value=0.19 Score=44.15 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=19.0
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
|+++|..++|||||+..|++.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999654
No 208
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=87.78 E-value=0.25 Score=43.07 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=21.5
Q ss_pred CeeeEEeeecccCCChhhhhHHhhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
+...|+++|..++||||++..|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999543
No 209
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=87.73 E-value=0.22 Score=44.18 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.8
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..|+++|..++||||++..|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999965
No 210
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=87.72 E-value=0.23 Score=43.68 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=20.0
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
..|+++|..++||||++..|.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999553
No 211
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.64 E-value=0.24 Score=42.66 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.5
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+...|+++|..++|||||..+|++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356799999999999999999953
No 212
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=87.57 E-value=0.25 Score=43.97 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=21.9
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.+..++|+++|..++|||||+.++++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhc
Confidence 34579999999999999999999943
No 213
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=87.53 E-value=0.12 Score=45.14 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=7.3
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+..++|+++|+.++|||||+.+|+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~ 41 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFT 41 (208)
T ss_dssp EEEEEEEEC---------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHH
Confidence 347899999999999999999994
No 214
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.50 E-value=0.2 Score=45.79 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999997754
No 215
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=87.33 E-value=0.11 Score=45.82 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=22.2
Q ss_pred CCCeeeEEeeecccCCChhhhhHHh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
++..++|+++|+.++|||||+.+++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 3558999999999999999999993
No 216
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.44 E-value=0.22 Score=43.63 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=19.5
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
+|+++|..++||||++..|.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999553
No 217
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.41 E-value=0.19 Score=49.47 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.9
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
..++|+++|+.++|||||+.+|.
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHh
Confidence 36899999999999999999983
No 218
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=87.40 E-value=0.23 Score=47.04 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.2
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
...|+++|+.++|||||+.+|++.
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCC
Confidence 457999999999999999999654
No 219
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=87.32 E-value=0.27 Score=43.94 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.5
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
...+|+++|+.++|||||+.+++..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999996554
No 220
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.28 E-value=0.28 Score=42.95 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred CeeeEEeeecccCCChhhhhHHhhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
..+.|+++|..++|||||+.++++.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3678999999999999999999553
No 221
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=87.11 E-value=0.32 Score=42.32 Aligned_cols=26 Identities=23% Similarity=0.537 Sum_probs=22.8
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+.+.++|+++|..++|||||+.++++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 45589999999999999999999943
No 222
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=86.98 E-value=0.26 Score=47.55 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=22.6
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
++..-|+++|..++|||||+..|.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 335678999999999999999997654
No 223
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.93 E-value=0.29 Score=42.93 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.6
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...|+++|..++||||++..|..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999965
No 224
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=86.92 E-value=0.26 Score=43.71 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=21.3
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
--+|+++|-.++||||++..|.+.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3478999999999999999996544
No 225
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.83 E-value=0.23 Score=44.24 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.1
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
-++++|..++|||||+..|++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999965
No 226
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=86.62 E-value=0.25 Score=41.68 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=18.5
Q ss_pred eeEEeeecccCCChhhhhHH
Q psy9643 95 CNIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l 114 (412)
..|++.|-.++||||++..|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 227
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=86.58 E-value=0.25 Score=44.28 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=20.8
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
..|+++|..++||||++..|.+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999996543
No 228
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.52 E-value=0.26 Score=42.69 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.2
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
..+|+++|-.++||||++..|...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999996543
No 229
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.52 E-value=0.23 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 5899999999999999997754
No 230
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.50 E-value=0.23 Score=45.54 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 37 ~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 37 LAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999997643
No 231
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=86.48 E-value=1.1 Score=48.60 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.0
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
...|+++|+..+|||||..+|++.
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~ 74 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGR 74 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999999774
No 232
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=86.44 E-value=0.29 Score=47.94 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=24.1
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
..+....|+++|+.++|||||+.+|+..+
T Consensus 75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 75 DSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp GCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34456789999999999999999996554
No 233
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.44 E-value=0.26 Score=43.08 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=18.9
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
-++++|..++|||||+..|.+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999955
No 234
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.27 E-value=0.27 Score=42.04 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.6
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
-||++.|-.++||||++..|...+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999995533
No 235
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.25 E-value=0.24 Score=46.25 Aligned_cols=23 Identities=39% Similarity=0.312 Sum_probs=20.2
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|..++|||||...|++.+.
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 58999999999999999987543
No 236
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=86.24 E-value=0.29 Score=43.80 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.6
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.|.+|++.|-.++||||++..|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999954
No 237
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=86.16 E-value=0.28 Score=41.61 Aligned_cols=22 Identities=27% Similarity=0.058 Sum_probs=19.5
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.|+++|-.++||||++..|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999554
No 238
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=85.78 E-value=0.37 Score=45.98 Aligned_cols=27 Identities=22% Similarity=0.065 Sum_probs=22.3
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++..-|+|.|..++|||||+..|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344667899999999999999998543
No 239
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=85.74 E-value=0.33 Score=44.56 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=20.7
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.-|+++|-.++|||||+..|.+.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999996644
No 240
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.53 E-value=0.35 Score=44.66 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.5
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...|++.|-.++||||++..|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999954
No 241
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=85.50 E-value=0.29 Score=42.45 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=16.3
Q ss_pred EEeeecccCCChhhhhHH
Q psy9643 97 IGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l 114 (412)
++++|..++|||||...+
T Consensus 12 ~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 589999999999999965
No 242
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=85.46 E-value=0.3 Score=43.17 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.2
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
..|+++|-.++||||++..|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999554
No 243
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.46 E-value=0.28 Score=45.28 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.4
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999997643
No 244
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.41 E-value=0.38 Score=46.75 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=22.7
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
+...-|+++|-.++||||++..|.+.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678999999999999999996654
No 245
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.41 E-value=0.29 Score=45.28 Aligned_cols=22 Identities=36% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||.+.|++.+
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999997754
No 246
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.38 E-value=0.28 Score=46.20 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 5899999999999999998754
No 247
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.28 E-value=0.29 Score=45.93 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999997754
No 248
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.25 E-value=0.29 Score=45.25 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.9
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
-++++|..++|||||...|++.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999997753
No 249
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=85.22 E-value=0.31 Score=45.22 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 27 ~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 27 CVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999997754
No 250
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.21 E-value=0.29 Score=45.97 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 36 ~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5899999999999999998754
No 251
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=85.06 E-value=0.38 Score=43.59 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=19.0
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||...|++.
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999764
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=85.05 E-value=0.32 Score=44.02 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.2
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
-++++|..++|||||+..|++.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3689999999999999999653
No 253
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=85.03 E-value=0.3 Score=45.75 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.6
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 49 ~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 49 CALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 5899999999999999997743
No 254
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=84.98 E-value=0.36 Score=42.23 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=20.8
Q ss_pred cCCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 89 SRDKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...+..++|+++|..++|||||+.++++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHh
Confidence 3455589999999999999999988743
No 255
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=84.96 E-value=0.49 Score=41.89 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.4
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...|++.|-.++||||++..|.+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999955
No 256
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=84.81 E-value=0.31 Score=46.19 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 5899999999999999998755
No 257
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=84.74 E-value=0.42 Score=41.78 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.0
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
..+|+++|-.++||||++..|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999654
No 258
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.72 E-value=0.42 Score=41.34 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.4
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..+|+++|-.++||||++..|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 259
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=84.69 E-value=0.34 Score=46.42 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.0
Q ss_pred eeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
..-|+++|..++|||||+..|.+.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45689999999999999999977543
No 260
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=84.68 E-value=0.37 Score=42.04 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=18.9
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
.|+++|..++||||++..|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999964
No 261
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=84.64 E-value=0.37 Score=44.91 Aligned_cols=21 Identities=43% Similarity=0.483 Sum_probs=19.4
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
+|+++|+.++|||||..+|++
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 689999999999999999954
No 262
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.61 E-value=0.33 Score=45.16 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 38 ~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999997754
No 263
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=84.55 E-value=0.38 Score=43.15 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.1
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
+..+|+++|-.++||||++..|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999996543
No 264
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=84.42 E-value=0.35 Score=43.08 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=18.8
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||...|++.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhh
Confidence 689999999999999999654
No 265
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=84.40 E-value=0.34 Score=45.22 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.6
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 29 ~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5899999999999999997754
No 266
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=84.35 E-value=0.46 Score=41.21 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=20.6
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
...|+++|-.++||||++..|...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999543
No 267
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.10 E-value=0.36 Score=44.00 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999997754
No 268
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=84.07 E-value=0.42 Score=42.65 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=21.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...++|+++|..++|||||+.++++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHhc
Confidence 3478999999999999999999943
No 269
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=83.72 E-value=0.48 Score=41.20 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=21.1
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
...|++.|-.++||||++..|...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999995433
No 270
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=83.70 E-value=0.39 Score=44.64 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.3
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||...|++.
T Consensus 32 ~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999999875
No 271
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=83.65 E-value=0.38 Score=45.28 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 53 ~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCCcHHHHHHHHHcCC
Confidence 5899999999999999997754
No 272
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.64 E-value=0.38 Score=45.06 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 44 ~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999997754
No 273
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=83.63 E-value=0.49 Score=47.84 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.8
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
..|++++|..++|||||+..|++.
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCc
Confidence 578999999999999999999765
No 274
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=83.63 E-value=0.42 Score=40.61 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.0
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
++|++.|-.++||||++..|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999553
No 275
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=83.63 E-value=0.41 Score=41.23 Aligned_cols=23 Identities=48% Similarity=0.655 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
+|+++|-.++||||++..|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999996543
No 276
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=83.58 E-value=0.41 Score=42.63 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.0
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
++|++.|-.++||||++..|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999543
No 277
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=83.49 E-value=0.42 Score=42.74 Aligned_cols=23 Identities=30% Similarity=0.199 Sum_probs=19.8
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..-|+++|-.++|||||+..|.+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 34578999999999999999954
No 278
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=83.45 E-value=0.4 Score=46.28 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=21.8
Q ss_pred eEEeeecccCCChhhhhHHhhhccccc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLMEGM 122 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~~~~ 122 (412)
.++++|..++|||||+..|++.+ .|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~-~G~ 153 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL-GGS 153 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH-TCE
T ss_pred EEEEECCCCCcHHHHHHHHhhhc-Cce
Confidence 46899999999999999998754 543
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=83.45 E-value=0.45 Score=40.67 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=19.5
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..|++.|..++||||++.+|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4688999999999999999964
No 280
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=83.39 E-value=0.57 Score=42.11 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.9
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..+|+++|..++|||||+.+|++
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 57899999999999999999943
No 281
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=83.32 E-value=0.5 Score=40.85 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.6
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
...|+++|-.++||||++..|.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999553
No 282
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=83.29 E-value=0.44 Score=44.91 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.8
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.++|+++|+.++|||||..+|++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 46899999999999999999964
No 283
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=83.25 E-value=1.3 Score=44.89 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=36.2
Q ss_pred ecCC--CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhc
Q psy9643 6 IDAA--DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE 47 (412)
Q Consensus 6 ~d~~--d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~ 47 (412)
+|+. |++.++.++.|++++|.++||+.++.|++..||+...+
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~n 198 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDN 198 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBT
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcC
Confidence 3884 67888899999999999999987789999999987753
No 284
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=83.13 E-value=0.56 Score=45.84 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.4
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
+...|+++|..++|||||+.+|++.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46678999999999999999997643
No 285
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=83.09 E-value=0.44 Score=43.43 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=19.5
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
-++++|..++|||||+..|++.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5689999999999999999664
No 286
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=83.06 E-value=0.44 Score=42.47 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.1
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
++|++.|-.++||||++..|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999543
No 287
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=83.05 E-value=0.66 Score=42.82 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=21.4
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
...|.++|..++||||++..|...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4678999999999999999996543
No 288
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=82.99 E-value=0.42 Score=45.11 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 48 ~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999997754
No 289
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=82.88 E-value=0.43 Score=44.55 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999997754
No 290
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=82.84 E-value=0.42 Score=45.32 Aligned_cols=22 Identities=27% Similarity=0.093 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5899999999999999998754
No 291
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=82.80 E-value=0.46 Score=43.50 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=19.4
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
-.|+++|..++||||++..|+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 292
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=82.78 E-value=0.67 Score=40.76 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=20.8
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
...|++.|-.++||||++..|...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999543
No 293
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=82.72 E-value=0.45 Score=43.05 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=14.4
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
-|+++|-.++|||||+..|.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999996
No 294
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.69 E-value=0.6 Score=41.18 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=20.4
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...|++.|-.++||||++..|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999954
No 295
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=82.60 E-value=0.46 Score=45.40 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.6
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||.+.|++.+
T Consensus 67 ~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 5899999999999999997754
No 296
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=82.55 E-value=0.28 Score=43.08 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.3
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||+..|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999664
No 297
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=82.49 E-value=0.55 Score=43.88 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.4
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
...|+++|..++|||||+.+|++.
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCC
Confidence 468999999999999999999654
No 298
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=82.40 E-value=0.6 Score=41.43 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.3
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
..-|+++|-.++||||++..|.+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999997644
No 299
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=82.38 E-value=0.48 Score=41.68 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=18.4
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
-|+++|..++|||||+.+|..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999943
No 300
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=82.38 E-value=0.63 Score=46.45 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.5
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
-++...|+++|+.++|||||..+|++
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34467899999999999999999965
No 301
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=82.27 E-value=0.53 Score=41.35 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
...+.|+++|..++|||||+.+++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHH
Confidence 347899999999999999999994
No 302
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=82.17 E-value=0.55 Score=40.55 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.4
Q ss_pred eeEEeeecccCCChhhhhHHhhhcc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
+| +++|..++||||+..+|...++
T Consensus 28 ~~-~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FT-AIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EE-EEEECTTSSHHHHHHHHHHHTT
T ss_pred cE-EEECCCCCCHHHHHHHHHHHHc
Confidence 44 6999999999999999976554
No 303
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=82.05 E-value=0.53 Score=40.74 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=18.9
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
.|++.|-.++||||++..|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999954
No 304
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=82.01 E-value=0.6 Score=40.23 Aligned_cols=23 Identities=26% Similarity=0.125 Sum_probs=20.0
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.|++.|-.++||||++..|...+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999996543
No 305
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=81.98 E-value=0.55 Score=45.61 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.1
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
-+++++|..++|||||...|++.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999653
No 306
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=81.98 E-value=0.56 Score=40.21 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=20.5
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
..|+++|-.++||||++.+|...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368899999999999999996543
No 307
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=81.96 E-value=0.55 Score=40.37 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=16.0
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
..|++.|..++||||++..|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999543
No 308
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=81.92 E-value=0.57 Score=43.33 Aligned_cols=22 Identities=32% Similarity=0.258 Sum_probs=20.1
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
...|+++|..++||||++..|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999996
No 309
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=81.84 E-value=0.62 Score=41.16 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.6
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.-.|+++|-.++||||+...|.+.+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999996654
No 310
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=81.76 E-value=0.62 Score=41.12 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.3
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...|++.|-.++||||++..|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999954
No 311
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.73 E-value=0.57 Score=40.40 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=20.7
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
..|++.|-.++||||++..|...+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999996544
No 312
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=81.55 E-value=0.64 Score=41.51 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.4
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...|++.|-.++||||++..|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999954
No 313
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=81.46 E-value=0.51 Score=46.55 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=19.1
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
.|+++|+.++|||||..+|++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 489999999999999999954
No 314
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=81.38 E-value=0.57 Score=48.39 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.2
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
..||+++|..+||||||...|++.+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3469999999999999999996543
No 315
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=81.24 E-value=0.61 Score=40.28 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=19.7
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..|+++|-.++||||++..|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999954
No 316
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=81.23 E-value=0.69 Score=40.51 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=21.2
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
...|++.|-.++||||++..|...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999996543
No 317
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=81.13 E-value=0.55 Score=40.59 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.1
Q ss_pred eeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.-++++.|..++|||||+.++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999976553
No 318
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=81.10 E-value=0.71 Score=46.39 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...++|+++|..++|||||+.+|++
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g 202 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILN 202 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHT
T ss_pred ccCceEEEECCCCCCHHHHHHHHhC
Confidence 3468999999999999999999954
No 319
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=81.01 E-value=0.75 Score=40.50 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.0
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
...|+++|-.++||||++..|...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999653
No 320
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=80.79 E-value=0.62 Score=41.46 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=18.8
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
-++++|..++|||||+..|++
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999965
No 321
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=80.69 E-value=0.59 Score=43.93 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||...|++.
T Consensus 49 ~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999999885
No 322
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=80.66 E-value=0.66 Score=41.40 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=20.1
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
++|++.|-.++||||++..|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999653
No 323
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=80.64 E-value=0.7 Score=40.53 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.7
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..|++.|-.++||||++..|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999999954
No 324
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=80.45 E-value=0.71 Score=46.44 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=22.2
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
...++++|..++|||||+..|++.+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 5589999999999999999998754
No 325
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=80.39 E-value=0.66 Score=44.31 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.9
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.++|+++|..++|||||+.+|.+
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 57889999999999999999854
No 326
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=80.19 E-value=0.63 Score=39.59 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.5
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.|++.|-.++||||++..|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999553
No 327
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=80.13 E-value=0.65 Score=40.84 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=18.8
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
-++++|..++|||||+.+|...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4688999999999999999543
No 328
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=79.90 E-value=0.81 Score=38.91 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.0
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.-+++++|-.++|||||+..+.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999954
No 329
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=79.88 E-value=0.76 Score=40.72 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=19.8
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...|+++|-.++||||++.+|..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34679999999999999999944
No 330
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=79.70 E-value=0.65 Score=40.12 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.4
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
+|+++|-.++||||++..|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999553
No 331
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=79.59 E-value=0.94 Score=38.95 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.7
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..|++.|-.++||||++..|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999954
No 332
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=79.54 E-value=0.66 Score=45.92 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHhcCC
Confidence 5899999999999999997754
No 333
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=79.44 E-value=0.66 Score=43.60 Aligned_cols=22 Identities=41% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 33 ~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 33 VIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999997765
No 334
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=79.31 E-value=0.77 Score=46.80 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.2
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..++|+++|+.++|||||..+|++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~ 246 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQ 246 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 357899999999999999999954
No 335
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=79.19 E-value=0.49 Score=41.83 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=18.4
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
-|++.|-.++||||++..|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999943
No 336
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=79.18 E-value=0.81 Score=41.20 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.2
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
...|+++|-.++||||++..|...+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999996543
No 337
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=79.17 E-value=0.77 Score=49.23 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.3
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++.++|+++|+.++|||||+.+|++
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg 91 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIG 91 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3478999999999999999999964
No 338
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=79.09 E-value=0.81 Score=39.80 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=20.6
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
...|+++|-.++||||++..|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999553
No 339
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=78.82 E-value=0.74 Score=39.72 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.9
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.+.|+++|-.++|||||+.++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999999943
No 340
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=78.79 E-value=0.78 Score=45.00 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.3
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.-+++++|..++|||||...|++
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999955
No 341
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=78.76 E-value=0.95 Score=38.98 Aligned_cols=23 Identities=35% Similarity=0.290 Sum_probs=20.2
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..+|+++|-.++||||++..|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999954
No 342
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=78.74 E-value=0.96 Score=47.12 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.4
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
...|+++|+.++|||||+.+|++.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999543
No 343
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=78.71 E-value=0.87 Score=41.30 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.7
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
..+|+++|-.++||||++..|...+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999996543
No 344
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=78.71 E-value=0.77 Score=45.82 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.8
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++|+++|+.++|||||..+|++
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~ 22 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATL 22 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4789999999999999999954
No 345
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=78.64 E-value=0.75 Score=42.90 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.4
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
-+|+++|..++||||+...|.+.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999996533
No 346
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=78.61 E-value=0.88 Score=46.27 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=34.1
Q ss_pred cCC----CHHHHHHHHHHHHhhHhhc-CCC-CCCCCeeechhhhhh
Q psy9643 7 DAA----DAEMAELVEMEMRELLTEM-GWK-GDEVPFVKGSALCAL 46 (412)
Q Consensus 7 d~~----d~e~~~lve~e~~~~l~~~-~~~-~~~~p~~~gsal~al 46 (412)
|+. |++.++.++.|++++|.++ ||+ +.+.|++..||+...
T Consensus 192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~ 237 (467)
T 1r5b_A 192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQ 237 (467)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTB
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccc
Confidence 873 4788899999999999999 997 557899999998764
No 347
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=78.54 E-value=0.83 Score=41.46 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.2
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
-.-|++.|..++||||++..|.+
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999999854
No 348
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=78.51 E-value=0.82 Score=45.02 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.9
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.+|+++|..+.|||||..+|++
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~ 184 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIE 184 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHh
Confidence 4789999999999999999954
No 349
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=78.44 E-value=0.8 Score=46.10 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.1
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++|+++|..++|||||+..|++..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCC
Confidence 5778999999999999999997654
No 350
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=78.20 E-value=0.93 Score=42.41 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=20.6
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+.-.++++|..++|||||...|++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 345689999999999999999955
No 351
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=78.16 E-value=2.9 Score=41.91 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=34.7
Q ss_pred cCCC----HHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhh
Q psy9643 7 DAAD----AEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCAL 46 (412)
Q Consensus 7 d~~d----~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al 46 (412)
|+.+ ++.++.++.|+++++.++||+.++.|++.-||+...
T Consensus 155 Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~ 198 (435)
T 1jny_A 155 DLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGD 198 (435)
T ss_dssp GGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTB
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCc
Confidence 8844 678889999999999999998888999999998653
No 352
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=78.13 E-value=0.91 Score=41.68 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.8
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++..+|++.|-.++||||++.+|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999954
No 353
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=78.11 E-value=0.99 Score=43.97 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.8
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.....|+++|+.++|||||+.+|++
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3467899999999999999999954
No 354
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=78.09 E-value=0.74 Score=41.04 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.1
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
...|+++|-.++||||++..|.+.+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999995443
No 355
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=77.82 E-value=1 Score=42.42 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.5
Q ss_pred CCeeeEEeeecccCCChhhhhHHh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+..++|+++|..++|||||+.+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~ 176 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYT 176 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHH
T ss_pred cceeEEEEECCCCCChHHHHHHHH
Confidence 446899999999999999999994
No 356
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=77.65 E-value=0.67 Score=45.32 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++++|..++|||||+..|++.+
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999997753
No 357
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=77.58 E-value=0.99 Score=41.00 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.2
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
...|+++|..++||||++..|.+.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999996533
No 358
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=77.53 E-value=0.83 Score=43.77 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.4
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
-.++++|..++|||||++.|++.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999996643
No 359
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=77.44 E-value=0.85 Score=47.94 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=36.0
Q ss_pred cCC--CHHHHHHHHHHHHhhH-hhcCCCCCCCCeeechhhhhh
Q psy9643 7 DAA--DAEMAELVEMEMRELL-TEMGWKGDEVPFVKGSALCAL 46 (412)
Q Consensus 7 d~~--d~e~~~lve~e~~~~l-~~~~~~~~~~p~~~gsal~al 46 (412)
|+. +++.++.++.|++++| .++||+.+++|++..||+...
T Consensus 326 Dl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~ 368 (592)
T 3mca_A 326 DLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGT 368 (592)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCS
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCc
Confidence 884 5888999999999999 999999889999999998775
No 360
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=77.40 E-value=1 Score=43.61 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=22.7
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
+....|+++|+.++|||||+.+|++.+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346678999999999999999997654
No 361
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=77.31 E-value=1.1 Score=42.96 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=20.5
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.-.|+++|..++|||||+..|.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 446789999999999999999654
No 362
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=77.07 E-value=0.85 Score=41.11 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.1
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
.++++|..++|||||+..|+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 35899999999999999996
No 363
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=76.98 E-value=0.97 Score=40.79 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.0
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
++|++.|-.++||||++..|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999653
No 364
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=76.63 E-value=0.97 Score=40.47 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=20.9
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.+|+++|-.++||||++..|...+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999996544
No 365
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=76.51 E-value=0.88 Score=44.88 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=19.3
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|+.++|||||+..|++.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 4689999999999999999653
No 366
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=76.42 E-value=1 Score=39.45 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.1
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.|++.|-.++||||++..|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999996543
No 367
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=76.09 E-value=1.1 Score=42.52 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=17.9
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
+.-|++.|-.++||||++..|...+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4458999999999999999996543
No 368
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=76.01 E-value=1.2 Score=43.19 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=22.0
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
+...++++|..++|||||+..|++.+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 35578999999999999999997644
No 369
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=75.63 E-value=0.89 Score=45.73 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=19.4
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.|+++|+.++|||||+.+|++.
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4789999999999999999653
No 370
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=75.61 E-value=1 Score=38.30 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=19.8
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.+| +|+|..++||||+..+|.-.+
T Consensus 24 g~~-~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GIN-LIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEE-EEECCTTSSHHHHHHHHHHHH
T ss_pred CeE-EEECCCCCCHHHHHHHHHHHH
Confidence 566 689999999999999995433
No 371
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=75.54 E-value=0.64 Score=44.77 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.9
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||+..|++.
T Consensus 83 vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 83 LALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEESSSCHHHHHHHHHHTTS
T ss_pred EEEECCCCchHHHHHHHHHcC
Confidence 689999999999999999764
No 372
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=75.44 E-value=1.2 Score=39.96 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=20.8
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.+|+++|-.++||||++..|...+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999996543
No 373
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=75.38 E-value=1 Score=39.04 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=18.6
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
-|++.|-.++||||++..|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999954
No 374
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=75.31 E-value=1.2 Score=46.04 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=21.4
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
++..+|+++|+.++||||++.+|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999996433
No 375
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=75.29 E-value=1.1 Score=44.27 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=20.0
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+.|+++|+.++|||||..+|++
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 5789999999999999999954
No 376
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=74.98 E-value=1.4 Score=41.48 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.0
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
...|++.|-.++||||++..|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999994
No 377
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=74.72 E-value=1.3 Score=43.71 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=20.9
Q ss_pred CeeeEEeeecccCCChhhhhHHhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+.-+++++|..++|||||...|++
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 355789999999999999999955
No 378
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=74.64 E-value=1.1 Score=44.15 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.6
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHCCC
Confidence 5899999999999999997754
No 379
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=74.31 E-value=1.4 Score=42.28 Aligned_cols=22 Identities=32% Similarity=0.264 Sum_probs=19.1
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
-++++|.-++|||||..+|++.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 3478999999999999999764
No 380
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=74.21 E-value=1.5 Score=38.14 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.6
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++.+.|+++|-.+.|||||+.++++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 3468899999999999999999953
No 381
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=74.16 E-value=1.8 Score=40.94 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=20.6
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
...|+++|-.++||||++.+|...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999543
No 382
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=74.04 E-value=1.2 Score=44.18 Aligned_cols=22 Identities=27% Similarity=0.154 Sum_probs=19.4
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|.+.+
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCcHHHHHHHHHHcCC
Confidence 5899999999999999997754
No 383
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=74.02 E-value=1.4 Score=43.26 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=20.7
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.-+|+++|-.++|||||...|++.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 348899999999999999999553
No 384
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=73.96 E-value=1.1 Score=45.89 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=20.6
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
-++++|+.++|||||...|++.+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCC
Confidence 358999999999999999987554
No 385
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=73.81 E-value=1.2 Score=43.86 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5799999999999999997754
No 386
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=73.69 E-value=2.3 Score=42.75 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=33.4
Q ss_pred cCC----CHHHHHHHHHHHHhhHhhcCCCCC-CCCeeechhhhhh
Q psy9643 7 DAA----DAEMAELVEMEMRELLTEMGWKGD-EVPFVKGSALCAL 46 (412)
Q Consensus 7 d~~----d~e~~~lve~e~~~~l~~~~~~~~-~~p~~~gsal~al 46 (412)
|+. +++..+.++.|++++|.++||+.+ +.|++..||+...
T Consensus 166 Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ 210 (439)
T 3j2k_7 166 DDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGA 210 (439)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCc
Confidence 773 367788899999999999999754 7899999998764
No 387
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=73.67 E-value=1.3 Score=43.77 Aligned_cols=22 Identities=32% Similarity=0.249 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 5899999999999999997754
No 388
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=73.63 E-value=1.2 Score=43.92 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 5899999999999999997754
No 389
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=73.62 E-value=1.8 Score=39.95 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.8
Q ss_pred CCCeeeEEeeecc---------cCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHV---------DHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHV---------D~GKSTl~~~l~~ 116 (412)
..+.++|+++|-. +.|||||+.++++
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 4457899999999 9999999999964
No 390
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=73.62 E-value=1.3 Score=45.15 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.6
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||++.|++.+
T Consensus 141 v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 141 VVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp EEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCcc
Confidence 6899999999999999997754
No 391
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=73.38 E-value=1.2 Score=44.03 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|.+.+
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCChHHHHHHHHHcCC
Confidence 5899999999999999997754
No 392
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=73.20 E-value=1.2 Score=43.93 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=19.9
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++|+++|+.++|||||..+|++
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~ 23 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTR 23 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999964
No 393
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=73.16 E-value=1.7 Score=41.05 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.0
Q ss_pred CCeeeEEeeecccCCChhhhhHHhh
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+..++++++|..+.|||||+.+|++
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCceEEEEecCCCchHHHHHHHhc
Confidence 4468999999999999999999953
No 394
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=72.87 E-value=1.3 Score=44.07 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHcCC
Confidence 5899999999999999997754
No 395
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=72.81 E-value=1.3 Score=43.64 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.3
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
-.|+++|..++|||||++.|++.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Confidence 357899999999999999996643
No 396
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=72.73 E-value=1.3 Score=43.04 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.3
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.|+++|..++|||||..+|++.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999873
No 397
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=72.42 E-value=1.3 Score=42.27 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=18.3
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
.++++|+.++|||||+..|+
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45899999999999999996
No 398
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=72.41 E-value=1.3 Score=45.95 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.1
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++++|..++|||||...|++.+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 368999999999999999988654
No 399
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.25 E-value=1.6 Score=43.87 Aligned_cols=27 Identities=33% Similarity=0.325 Sum_probs=22.5
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
++.-.|+++|..++|||||...|++.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 445578999999999999999996643
No 400
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=72.24 E-value=3.1 Score=40.27 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=19.4
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.-|+++|=.++|||||+.+|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 35789999999999999999543
No 401
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=71.75 E-value=1.3 Score=45.92 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.1
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
-++++|..++|||||++.|++.+.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 458999999999999999988654
No 402
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=71.68 E-value=3.7 Score=43.22 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=59.5
Q ss_pred cCC--CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCC--------CCCCCccCccc-cchh--hcccccccc
Q psy9643 7 DAA--DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGK--------EPEIGIIPLYP-NDKF--EINKLNVFV 73 (412)
Q Consensus 7 d~~--d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~--------~~~~~~~~~~~-~~~~--~~~~~~~~~ 73 (412)
|+. +++.++.++.++++++.++||..++.|++.-||+....-. .+|+.-..++. =..+ .++..++..
T Consensus 316 Dl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~ 395 (611)
T 3izq_1 316 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGI 395 (611)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCC
T ss_pred cccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCccc
Confidence 884 4788899999999999999998888999999998764221 13333222221 0111 111111111
Q ss_pred ccccccchhhhhccccCCCC-eeeEEeeecccCCC
Q psy9643 74 PLINSRRGYAEKQVYSRDKP-HCNIGTIGHVDHGK 107 (412)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~k~-~~ni~~igHVD~GK 107 (412)
..+.++.|++.+++....+ ..-.++.|.|-+|.
T Consensus 396 -~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~ 429 (611)
T 3izq_1 396 -NKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGS 429 (611)
T ss_dssp -SCCSCCEEECCEEECCSSSCSSSSEEEEEEEESE
T ss_pred -ccccchhhheeeeeccCccCCCeeEEEEEEEece
Confidence 2456677888887764421 11124567666664
No 403
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=71.41 E-value=1.7 Score=40.30 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=20.3
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
..|+++|-.++||||++..|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999654
No 404
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=71.33 E-value=1.6 Score=40.29 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=20.9
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.+.|++.|-.++||||++..|...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999643
No 405
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=71.30 E-value=1.6 Score=38.58 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.0
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||+.+|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999643
No 406
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=71.22 E-value=1.8 Score=43.31 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=22.5
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
+-+....|+++|..++|||||..+|++
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg 44 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTN 44 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 334467899999999999999999954
No 407
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=71.05 E-value=1.9 Score=41.74 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=20.5
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.--|+++|..++|||||+..|.+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999653
No 408
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=70.89 E-value=1.5 Score=45.52 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.2
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|..++|||||...|++.+.
T Consensus 315 ~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 315 IGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 58999999999999999987543
No 409
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=70.85 E-value=1 Score=44.19 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEECCCCccHHHHHHHHHcCC
Confidence 5899999999999999997754
No 410
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=70.83 E-value=0.79 Score=44.20 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=19.0
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
.++++|+.++|||||+..|++
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHhcc
Confidence 568999999999999999954
No 411
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=70.80 E-value=4.9 Score=40.15 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=33.4
Q ss_pred cCC--CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhh
Q psy9643 7 DAA--DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCAL 46 (412)
Q Consensus 7 d~~--d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al 46 (412)
|+. +++.++.++.|+++++.++||+..+.|++.-||+..-
T Consensus 168 Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~ 209 (434)
T 1zun_B 168 DLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGD 209 (434)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCT
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCC
Confidence 885 4777888889999999999976677899999997653
No 412
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=70.62 E-value=1.9 Score=41.02 Aligned_cols=25 Identities=28% Similarity=0.166 Sum_probs=21.0
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.-.|+++|..++||||++..|.+.+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999996544
No 413
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=70.48 E-value=1.5 Score=45.13 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.4
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
-.|+++|-.++|||||++.|.+.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHh
Confidence 357899999999999999997644
No 414
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=70.40 E-value=1.7 Score=39.13 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.6
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
-|+++|-.++|||||+.+|.+
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999999953
No 415
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=70.15 E-value=1.6 Score=45.51 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.4
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||.+.|++.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 3689999999999999999764
No 416
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=70.12 E-value=1.7 Score=40.12 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=18.7
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
.|+++|-.++||||++.+|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999954
No 417
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=69.98 E-value=1.6 Score=41.55 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.1
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||...|.+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCcHHHHHHHhccc
Confidence 4589999999999999999653
No 418
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=69.97 E-value=1.8 Score=38.45 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.5
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
..|+++|..++||||++..|...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 568999999999999999996543
No 419
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=69.87 E-value=1.5 Score=42.93 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.0
Q ss_pred eeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.+| +++|..++|||||..+|+..+|
T Consensus 24 g~~-~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 24 GIT-VVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp EEE-EEECCTTSSHHHHHHHHHHHHH
T ss_pred CeE-EEECCCCCCHHHHHHHHHHHhc
Confidence 465 4899999999999999976655
No 420
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=69.82 E-value=1.8 Score=45.29 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.4
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||...|++.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999764
No 421
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=69.56 E-value=1.8 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.3
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
-++++|..++|||||...|++.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3689999999999999999764
No 422
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=69.50 E-value=2.2 Score=42.96 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=22.5
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
++..+|+++|..++||||++..|...+
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 335689999999999999999996544
No 423
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=69.32 E-value=1 Score=44.18 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5899999999999999997754
No 424
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=69.27 E-value=1.6 Score=45.26 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.8
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 297 ~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999997754
No 425
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=68.63 E-value=1.7 Score=45.32 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||.+.|++.
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 372 VALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999774
No 426
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=68.48 E-value=1.9 Score=39.78 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.2
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...|++.|-.++||||++..|..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999944
No 427
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=68.32 E-value=1.9 Score=40.33 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=19.1
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||+..|++.+
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 5799999999999999996544
No 428
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=68.32 E-value=1.7 Score=45.74 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.2
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.++++|..++|||||...|++.+.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 468999999999999999988654
No 429
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=68.18 E-value=1.5 Score=46.12 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
|+++|..++|||||...|+|.+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 7999999999999999998864
No 430
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=67.83 E-value=2.5 Score=41.59 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=21.9
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
...||+++|..++||||+...|.+.+
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 35689999999999999999996543
No 431
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=67.78 E-value=2 Score=41.90 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=18.9
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||.+.|++.
T Consensus 74 ~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 74 IGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 589999999999999999664
No 432
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=67.76 E-value=1.9 Score=45.52 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.0
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
-++++|..++|||||...|++.+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 368999999999999999988654
No 433
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=67.73 E-value=1.9 Score=45.49 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.2
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|..++|||||...|++.+.
T Consensus 385 ~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 385 IGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 58999999999999999987543
No 434
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=67.68 E-value=2 Score=42.74 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.5
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||...|++.+
T Consensus 50 ~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 5899999999999999997754
No 435
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=67.29 E-value=2.9 Score=41.12 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=23.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhccc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLME 120 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~ 120 (412)
+..+-|.++|.-+|||||+.+++ .+++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~-~i~~~ 58 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM-RIIHG 58 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH-HHHHS
T ss_pred cCccEEEEECCCCCcHHHHHHHH-HHHhC
Confidence 44677889999999999999998 44555
No 436
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=67.22 E-value=2.2 Score=39.95 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=19.6
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..|+++|..++||||++.+|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999965
No 437
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=66.94 E-value=1.6 Score=45.61 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.9
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||...|++.
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTS
T ss_pred EEEECCCCChHHHHHHHHhcC
Confidence 689999999999999999764
No 438
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=66.89 E-value=5.2 Score=40.04 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.0
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..|+|.|=.++|||||+..|..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 3578999999999999999954
No 439
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=66.79 E-value=1.9 Score=41.84 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.1
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
...|+++|..++|||||+.+|++.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999664
No 440
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=66.77 E-value=0.57 Score=43.15 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.6
Q ss_pred EeeecccCCChhhhhHHhhhccc
Q psy9643 98 GTIGHVDHGKTTLTAAITKGLME 120 (412)
Q Consensus 98 ~~igHVD~GKSTl~~~l~~~l~~ 120 (412)
+++|..++|||||..+|++.++.
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhccccc
Confidence 78999999999999999887764
No 441
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=66.72 E-value=2 Score=45.31 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|..++|||||...|++.+.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 58999999999999999977543
No 442
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=66.50 E-value=1.6 Score=44.41 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=57.8
Q ss_pred cCC--CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCC--------CCCCccCccc-cchh--hcccccccc
Q psy9643 7 DAA--DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE--------PEIGIIPLYP-NDKF--EINKLNVFV 73 (412)
Q Consensus 7 d~~--d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~--------~~~~~~~~~~-~~~~--~~~~~~~~~ 73 (412)
|+. +++..+.++.+++++|.++||..++.|++.-||+...+-++ +|+.-..++. =..+ +++..++..
T Consensus 182 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~ 261 (483)
T 3p26_A 182 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGI 261 (483)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTC
T ss_pred CcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccc
Confidence 884 47888999999999999999988889999999987643221 2222222321 0111 222111111
Q ss_pred ccccccchhhhhccccCCCC-eeeEEeeecccCCC
Q psy9643 74 PLINSRRGYAEKQVYSRDKP-HCNIGTIGHVDHGK 107 (412)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~k~-~~ni~~igHVD~GK 107 (412)
..+.++.|++.+++...++ ..=.++.|.|-+|.
T Consensus 262 -~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~ 295 (483)
T 3p26_A 262 -NKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGS 295 (483)
T ss_dssp -CSSSCCEEEEEEEEC---CCSCCEEEEEEEEESE
T ss_pred -cCCCceEEEEEEEEccCCcCCCceEEEEEEecce
Confidence 1456677777777664321 11234567666663
No 443
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=66.48 E-value=1.5 Score=45.66 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=22.6
Q ss_pred eeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
--+|+++|..++|||||...|.+.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 46789999999999999999977654
No 444
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=66.25 E-value=1.5 Score=42.77 Aligned_cols=21 Identities=29% Similarity=0.631 Sum_probs=19.3
Q ss_pred eeEEeeecccCCChhhhhHHh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~ 115 (412)
..|+++|..++|||||+.+|+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~ 179 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVS 179 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSE
T ss_pred CeeeeeCCCCCCHHHHHHHHH
Confidence 478999999999999999994
No 445
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=65.87 E-value=2.5 Score=39.02 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=20.8
Q ss_pred CeeeEEeeecccCCChhhhhHHhhh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.|+.+|++|-.++||||++..|...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999653
No 446
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=65.76 E-value=2.2 Score=41.06 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=22.2
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
+.-++++.|..++|||||+..+.+.+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34568999999999999999997765
No 447
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=65.66 E-value=2.8 Score=39.82 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.1
Q ss_pred eeeEEeeecccCCChhhhhHHh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~ 115 (412)
.+.|+++|..++|||||..+++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~ 24 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIF 24 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999984
No 448
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=65.45 E-value=2.5 Score=37.95 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.2
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
++|+++|-.+|||+|.+..|+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999653
No 449
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=65.16 E-value=2.7 Score=39.26 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.0
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
++++++|..+.|||||+.+|++
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred hheEEeCCCCCCHHHHHHHHhc
Confidence 6899999999999999999943
No 450
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=64.92 E-value=2.3 Score=37.87 Aligned_cols=25 Identities=40% Similarity=0.465 Sum_probs=20.6
Q ss_pred eeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.+| +|+|..++||||+..+|.-.|+
T Consensus 24 ~~~-~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GIN-LIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEE-EEECCTTSSHHHHHHHHHHHHH
T ss_pred CeE-EEEcCCCCCHHHHHHHHHHHhc
Confidence 566 5889999999999999965554
No 451
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=64.86 E-value=2.8 Score=41.53 Aligned_cols=23 Identities=39% Similarity=0.385 Sum_probs=20.1
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.-.|+++|..++|||||+..|.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34678999999999999999965
No 452
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=64.84 E-value=1.7 Score=44.57 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.8
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.++|+++|..++|||||..+|++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~ 265 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLN 265 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHC
Confidence 47899999999999999999954
No 453
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=64.57 E-value=2 Score=45.01 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||...|++.
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 372 VAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEECSSSSSHHHHHHTTTTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999764
No 454
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=63.98 E-value=3.2 Score=37.71 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=18.9
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.|.++|-.++||+|.+..|+..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999653
No 455
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=63.66 E-value=3.8 Score=37.19 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.8
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
...|++.|-.++||||++..|...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 567899999999999999999543
No 456
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=63.65 E-value=2.7 Score=36.88 Aligned_cols=21 Identities=29% Similarity=0.205 Sum_probs=18.4
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
-++++|..++||||++.+|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999964
No 457
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=63.64 E-value=3.3 Score=37.08 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.8
Q ss_pred CeeeEEeeecccCCChhhhhHHh
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~ 115 (412)
+.+.|+++|-.+.|||||+.+++
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 36889999999999999999994
No 458
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=63.47 E-value=3.4 Score=39.59 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=20.5
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.-.|+++|..++||||++..|.+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH
Confidence 3457899999999999999996543
No 459
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=63.20 E-value=1.5 Score=43.10 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.0
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
++++|..++|||||..+|...+
T Consensus 63 ~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 63 CAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEESHHHHHHHHTHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3799999999999999996544
No 460
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=63.09 E-value=3.3 Score=37.50 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.0
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..|++.|-.++||||++..|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4588999999999999999943
No 461
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=62.89 E-value=2.9 Score=37.10 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=17.5
Q ss_pred eEEeeecccCCChhhhhHH
Q psy9643 96 NIGTIGHVDHGKTTLTAAI 114 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l 114 (412)
-+.+.|+.++|||||+-+|
T Consensus 18 gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLAL 36 (181)
T ss_dssp EEEEEESSSSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4678999999999999999
No 462
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=62.70 E-value=2.8 Score=38.06 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.4
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
.||+.|=+++||||++..|.
T Consensus 11 ~iglTGgigsGKStv~~~l~ 30 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFA 30 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999884
No 463
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=62.34 E-value=3.4 Score=41.65 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=22.1
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
++..+|.++|+-++||||++..|...+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678889999999999999996444
No 464
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=62.26 E-value=2.7 Score=40.55 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=21.5
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
+.+| +++|..++||||+..+|+..++
T Consensus 23 ~~~~-~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 23 EGIN-LIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp SEEE-EEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeE-EEECCCCCCHHHHHHHHHHHhc
Confidence 4677 5999999999999999965554
No 465
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=61.95 E-value=3 Score=42.05 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.8
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||.+.|++.
T Consensus 160 ~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 160 MGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 589999999999999999664
No 466
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=61.89 E-value=3.2 Score=37.70 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.3
Q ss_pred eEEeeecccCCChhhhhHHhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l 118 (412)
++.++|-.++|||||+.+|.+.+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999997654
No 467
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=61.75 E-value=3.1 Score=38.96 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.9
Q ss_pred EEeeecccCCChhhhhHHhhhc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l 118 (412)
+.++|..++|||||+.+|.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 8999999999999999997654
No 468
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=61.50 E-value=3.7 Score=37.24 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.8
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
...+++.|.-++||||++.+|..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHH
Confidence 45678899999999999999953
No 469
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=61.35 E-value=3.2 Score=38.57 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=18.8
Q ss_pred eEEeeecccCCChhhhhHHhhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~ 117 (412)
.++++|..++|||||+.++++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999653
No 470
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=61.04 E-value=4.1 Score=34.18 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.1
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..++.+.|-.+.||||++.++..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999944
No 471
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=60.79 E-value=3.8 Score=41.35 Aligned_cols=27 Identities=22% Similarity=0.091 Sum_probs=22.2
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
+...|+++|..++||||++..|...+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356778999999999999999975443
No 472
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=60.65 E-value=3.5 Score=38.21 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.7
Q ss_pred eEEeeecccCCChhhhhHHhhhcc
Q psy9643 96 NIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++.++|..++|||||+.+|.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcChHHHHHHHHHHHcC
Confidence 489999999999999999976543
No 473
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=60.03 E-value=3.7 Score=41.51 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.2
Q ss_pred eeeEEeeecccCCChhhhhHHhhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
..+|+++|--++||||++.+|...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999654
No 474
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=60.03 E-value=3.4 Score=36.84 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=18.6
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
.++++|..++|||||+.+|++
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 458999999999999999965
No 475
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=59.99 E-value=4.4 Score=37.76 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=24.1
Q ss_pred CCCCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643 90 RDKPHCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
..+|..++.+.|-.+.||||++..|.+.+
T Consensus 43 ~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 43 PNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 45666789999999999999999996543
No 476
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=58.85 E-value=6.3 Score=38.89 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=29.2
Q ss_pred cCCCHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhh
Q psy9643 7 DAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCA 45 (412)
Q Consensus 7 d~~d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~a 45 (412)
|+.+++-.+.+..|+++++.++++ ++.|++..||+..
T Consensus 140 Dl~~~~~~~~~~~~i~~~l~~~~~--~~~~ii~vSA~~g 176 (403)
T 3sjy_A 140 DVVSKEEALSQYRQIKQFTKGTWA--ENVPIIPVSALHK 176 (403)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSTT--TTCCEEECBTTTT
T ss_pred cccchHHHHHHHHHHHHHHHhhCC--CCCEEEEEECCCC
Confidence 887776566666789999988765 4689999999765
No 477
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=58.39 E-value=5.5 Score=38.96 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=22.6
Q ss_pred CCeeeEEeeecccCCChhhhhHHhhhccc
Q psy9643 92 KPHCNIGTIGHVDHGKTTLTAAITKGLME 120 (412)
Q Consensus 92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~ 120 (412)
...+-|.++|.-+|||||+.+++ ++++.
T Consensus 7 ~~~~k~lllG~~~sGKsT~~kq~-~~~~~ 34 (354)
T 2xtz_A 7 IHIRKLLLLGAGESGKSTIFKQI-KLLFQ 34 (354)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHH-HHHHS
T ss_pred CCceeEEEECCCCCcHHHHHHHH-HHHhc
Confidence 33556889999999999999999 45565
No 478
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=58.24 E-value=4.5 Score=36.82 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=19.9
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..++.+.|-.++||||++.+|.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34689999999999999999954
No 479
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=58.07 E-value=3.7 Score=36.36 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=17.7
Q ss_pred EEeeecccCCChhhhhHHh
Q psy9643 97 IGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~ 115 (412)
|+++|=.++|||||+.+|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999994
No 480
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=58.00 E-value=5.6 Score=38.54 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=23.3
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhhhccc
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITKGLME 120 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~ 120 (412)
.+..+-+-++|.-+|||||+.+++ ++++.
T Consensus 4 ~~~~~klLlLG~geSGKSTi~KQm-kiih~ 32 (327)
T 3ohm_A 4 ARRELKLLLLGTGESGKSTFIKQM-RIIHG 32 (327)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHH-HHHHS
T ss_pred hcccceEEEEcCCCccHHHHHHHH-HHHHc
Confidence 445677889999999999999998 55665
No 481
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=57.42 E-value=4.4 Score=38.65 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=19.8
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.+| +++|..++|||||.++|...+
T Consensus 25 g~~-~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 25 RVT-AIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp SEE-EEECCTTTCSTHHHHHHHHTS
T ss_pred CcE-EEECCCCCcHHHHHHHHHHHh
Confidence 355 699999999999999996443
No 482
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=56.46 E-value=3.9 Score=46.99 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=18.9
Q ss_pred eEEeeecccCCChhhhhHHhh
Q psy9643 96 NIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~~ 116 (412)
.++++|.+++|||||...|++
T Consensus 446 ~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTT
T ss_pred EEEEEecCCCcHHHHHHHhcc
Confidence 368999999999999999976
No 483
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=56.43 E-value=5 Score=33.66 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.1
Q ss_pred eeeEEeeecccCCChhhhhHHhh
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..++.+.|-.+.||||++.++..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 55788999999999999999944
No 484
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=56.35 E-value=4.5 Score=35.17 Aligned_cols=24 Identities=38% Similarity=0.335 Sum_probs=20.7
Q ss_pred eeEEeeecccCCChhhhhHHhhhc
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.++.+.|-.+.|||||+.++...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 688999999999999999995433
No 485
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=56.01 E-value=4.6 Score=39.42 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=19.9
Q ss_pred eeEEeeecccCCChhhhhHHhhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~~ 117 (412)
..|+|+|-.++||||++..|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 36899999999999999999543
No 486
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=55.82 E-value=4.3 Score=40.60 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=18.5
Q ss_pred eEEeeecccCCChhhhhHHh
Q psy9643 96 NIGTIGHVDHGKTTLTAAIT 115 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~l~ 115 (412)
.|+++|..+.|||||..+|+
T Consensus 3 ~v~ivG~pnvGKStL~nrl~ 22 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLV 22 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999999999994
No 487
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=55.75 E-value=2.5 Score=47.09 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEeeecccCCChhhhhHHhhhcc
Q psy9643 97 IGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~l~ 119 (412)
++++|..++|||||.+.|+|.+.
T Consensus 702 vaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 702 IAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp EEECSCCCHHHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 58999999999999999988654
No 488
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=55.53 E-value=6.8 Score=38.26 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=23.2
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhhhccc
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITKGLME 120 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~ 120 (412)
.+..+-+-++|.-+|||||+.+++ ++++.
T Consensus 29 ~~~~~klLlLG~geSGKST~~KQm-kii~~ 57 (353)
T 1cip_A 29 AAREVKLLLLGAGESGKSTIVKQM-KIIHE 57 (353)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHH-HHHHS
T ss_pred hcccceEEEEcCCCCCchhHHHHH-HHhhC
Confidence 455788999999999999999999 45555
No 489
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=54.92 E-value=4.7 Score=39.49 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.9
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.+|+++|..++|||||..+|++
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~ 182 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIK 182 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHh
Confidence 5789999999999999999954
No 490
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=54.69 E-value=6.7 Score=38.98 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.1
Q ss_pred eeEEeeecccCCChhhhhHHhh
Q psy9643 95 CNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 95 ~ni~~igHVD~GKSTl~~~l~~ 116 (412)
.-|+++|-.++||||++.+|..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999954
No 491
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=53.84 E-value=4.9 Score=39.96 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.1
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
.+| +++|..++||||+..+|...+
T Consensus 27 ~~~-~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFT-SIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEE-EEECSTTSSHHHHHHHHHHHT
T ss_pred CEE-EEECCCCCCHHHHHHHHHhhh
Confidence 444 699999999999999996654
No 492
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=53.57 E-value=6.4 Score=39.80 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=22.0
Q ss_pred CeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 93 PHCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 93 ~~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
+...|.++|.-++||||++..|...+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 356778999999999999999965443
No 493
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=53.56 E-value=4.2 Score=46.62 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=19.0
Q ss_pred EEeeecccCCChhhhhHHhhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITKG 117 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~~ 117 (412)
++++|..++|||||+..|.+.
T Consensus 419 ~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 419 VALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEECCSSSSHHHHHHHTTTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999764
No 494
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=53.52 E-value=5.2 Score=46.00 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=18.5
Q ss_pred EEeeecccCCChhhhhHHhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~ 116 (412)
|+++|..++|||||+..|.+
T Consensus 1108 vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1108 LALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEECSTTSSTTSHHHHHTT
T ss_pred EEEECCCCChHHHHHHHHhc
Confidence 68999999999999999965
No 495
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=53.24 E-value=6.2 Score=41.44 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.6
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~ 116 (412)
..+.+.|+++|...+|||||+.+|++
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g 60 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAG 60 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcC
Confidence 45578899999999999999999943
No 496
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=52.78 E-value=5.1 Score=41.05 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=18.7
Q ss_pred eEEeeecccCCChhhhhH--Hhhhc
Q psy9643 96 NIGTIGHVDHGKTTLTAA--ITKGL 118 (412)
Q Consensus 96 ni~~igHVD~GKSTl~~~--l~~~l 118 (412)
.++++|..++|||||+.+ +.+.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999 44543
No 497
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=52.69 E-value=4.9 Score=44.75 Aligned_cols=20 Identities=40% Similarity=0.513 Sum_probs=18.2
Q ss_pred EEeeecccCCChhhhhHHhh
Q psy9643 97 IGTIGHVDHGKTTLTAAITK 116 (412)
Q Consensus 97 i~~igHVD~GKSTl~~~l~~ 116 (412)
++++|..++|||||...|++
T Consensus 464 v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 464 YGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999963
No 498
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=52.55 E-value=8.2 Score=37.82 Aligned_cols=38 Identities=0% Similarity=-0.007 Sum_probs=32.3
Q ss_pred eecCCCHHHHHHHHHHHHhhHhhcCCCCCCCCeee--chhhhh
Q psy9643 5 YIDAADAEMAELVEMEMRELLTEMGWKGDEVPFVK--GSALCA 45 (412)
Q Consensus 5 ~~d~~d~e~~~lve~e~~~~l~~~~~~~~~~p~~~--gsal~a 45 (412)
++|+ +++.++.++.|++++|.++++ ++.|++. +||+.+
T Consensus 122 K~Dl-~~~~~~~~~~~i~~~l~~~~~--~~~~ii~~~~SA~~~ 161 (370)
T 2elf_A 122 SDST-HMHAIDELKAKLKVITSGTVL--QDWECISLNTNKSAK 161 (370)
T ss_dssp GGGS-CHHHHHHHHHHHHHHTTTSTT--TTCEEEECCCCTTSS
T ss_pred ccCC-CHHHHHHHHHHHHHHHHhcCC--CceEEEecccccccC
Confidence 4588 888888888999999999987 4689999 999873
No 499
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=52.22 E-value=4.8 Score=41.52 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=23.6
Q ss_pred CCCeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643 91 DKPHCNIGTIGHVDHGKTTLTAAITKGLM 119 (412)
Q Consensus 91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~ 119 (412)
.+.-.+|.++|--++||||+..+|...|.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 34458999999999999999999955443
No 500
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=52.11 E-value=6.2 Score=37.46 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=20.5
Q ss_pred eeeEEeeecccCCChhhhhHHhhhc
Q psy9643 94 HCNIGTIGHVDHGKTTLTAAITKGL 118 (412)
Q Consensus 94 ~~ni~~igHVD~GKSTl~~~l~~~l 118 (412)
...|+++|.-++||||++..|...+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4456788999999999999996544
Done!