RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9643
(412 letters)
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A
{Anopheles gambiae}
Length = 373
Score = 439 bits (1132), Expect = e-154
Identities = 169/281 (60%), Positives = 212/281 (75%)
Query: 125 SYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPG 184
YTY+ +Q IA +LL+ +RPK+GIICGSGL T+A+ +TD F Y+TIP+FPVSTV G
Sbjct: 89 GYTYDTLQEIATYLLERTELRPKVGIICGSGLGTLAEQLTDVDSFDYETIPHFPVSTVAG 148
Query: 185 HKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD 244
H G+LVFG + G+P+MCMQGRFH+YEGYPL KCAMP+RVM L+G THL+ATNAAGG NP
Sbjct: 149 HVGRLVFGYLAGVPVMCMQGRFHHYEGYPLAKCAMPVRVMHLIGCTHLIATNAAGGANPK 208
Query: 245 YEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNM 304
Y VGDIM+IKDHINLMGFAGNNPL G N++RFGPRF M Y+ +L IAR + +
Sbjct: 209 YRVGDIMLIKDHINLMGFAGNNPLQGPNDERFGPRFFGMANTYDPKLNQQAKVIARQIGI 268
Query: 305 SSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364
+ ++EGVY+ +GGPNFETVAE+ ML + GVDA+GMSTVHE+ITA HCGMT AFSLITN
Sbjct: 269 ENELREGVYTCLGGPNFETVAEVKMLSMLGVDAIGMSTVHEIITARHCGMTCFAFSLITN 328
Query: 365 KCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405
C Y++ E H+ ++ GK R + V+RIV +I
Sbjct: 329 MCTMSYEEEEEHCHDSIVGVGKNREKTLGEFVSRIVKHIHY 369
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase,
transferase, 9-deazaguanine, multisubstrate analogue
inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos
taurus} PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A*
2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A*
2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A*
1vfn_A* ...
Length = 284
Score = 435 bits (1122), Expect = e-154
Identities = 150/282 (53%), Positives = 194/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE Q AK+LL RP++ +ICGSGL + + +T F Y IP FP ST
Sbjct: 1 MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG++NG + MQGRFH YEGYP WK P+RV +L+GV L+ TNAAGGL
Sbjct: 61 VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R +
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++GGPNFETVAE +LR G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + DY+ +ANHEEV++AGK ++ V+ +++ I
Sbjct: 241 ITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed
beta-barrel, hydrolase; 2.38A {Grouper iridovirus}
Length = 285
Score = 434 bits (1118), Expect = e-153
Identities = 130/280 (46%), Positives = 172/280 (61%)
Query: 126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH 185
Y+L + A +L + IRP +GI+CGSGL I DS+ Y IP FPV +V GH
Sbjct: 2 TDYDLAKETAAWLNKQLQIRPVLGIVCGSGLGKIGDSLETSITVAYSDIPNFPVGSVKGH 61
Query: 186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
G L+FG +NG+ +CM+GRFH YEG+ + P+RV K +GV ++ TNAAGGLNP Y
Sbjct: 62 AGSLIFGSVNGVSCVCMKGRFHLYEGHTAARATFPMRVFKALGVKIVVLTNAAGGLNPSY 121
Query: 246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
GD M+++DHINL G AG NPL G N+D G RFP M Y+K LR + AR+L MS
Sbjct: 122 RPGDFMVVRDHINLPGLAGANPLTGPNDDTEGERFPSMTSVYDKTLRKYAISAARELGMS 181
Query: 306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
EGVY + GP+FET AE +LR+ G DAVGMST E I A H GM A SLI+N
Sbjct: 182 YATHEGVYCCVNGPSFETPAECKILRLMGSDAVGMSTAPETIVAKHGGMRCLAVSLISNV 241
Query: 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405
++ + AE HEEV++AG+ + ++V ++ I
Sbjct: 242 IASNCETPAEPTHEEVLRAGEEASARMTALVKLVIEKIRG 281
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A
{Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A*
3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A*
3iex_A*
Length = 287
Score = 434 bits (1118), Expect = e-153
Identities = 126/281 (44%), Positives = 179/281 (63%)
Query: 125 SYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPG 184
+ E ++ +A + SI P+IGIICGSGL +AD + D+ PY IP FP ++V G
Sbjct: 6 TANIENVKKVAHHIQKLTSIVPEIGIICGSGLGKLADGVKDKITIPYTKIPNFPQTSVVG 65
Query: 185 HKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD 244
H G L+FG ++G ++ MQGRFH YEGY A+PIRVMKL+GV L+ +NAAGGLN
Sbjct: 66 HSGNLIFGTLSGRKVVVMQGRFHMYEGYSNDTVALPIRVMKLLGVKILMVSNAAGGLNRS 125
Query: 245 YEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNM 304
++GD +I+KDHI L G NN L+G N++ FG RFP ++ AY++ LR + +A +
Sbjct: 126 LKLGDFVILKDHIYLPGLGLNNILVGPNQEAFGTRFPALSNAYDRDLRKLAVQVAEENGF 185
Query: 305 SSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364
++V +GVY + GGP +ET AE ML G D VGMST+ EV+ A HCG+ V A SL+TN
Sbjct: 186 GNLVHQGVYVMNGGPCYETPAECTMLLNMGCDVVGMSTIPEVVIARHCGIQVFAVSLVTN 245
Query: 365 KCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405
V D + + NHEEV+ G R +++S +I+ + +
Sbjct: 246 ISVLDVESDLKPNHEEVLATGAQRAELMQSWFEKIIEKLPK 286
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin,
transferase-transferase inhibitor complex; HET: IM5;
2.30A {Homo sapiens}
Length = 324
Score = 435 bits (1120), Expect = e-153
Identities = 149/285 (52%), Positives = 193/285 (67%)
Query: 119 MEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFP 178
M YTYE ++ A++LL RP++ IICGSGL + D +T IF Y IP FP
Sbjct: 33 PTLMENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFP 92
Query: 179 VSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAA 238
STVPGH G+LVFG +NG + MQGRFH YEGYPLWK P+RV L+GV L+ TNAA
Sbjct: 93 RSTVPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAA 152
Query: 239 GGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDI 298
GGLNP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R L
Sbjct: 153 GGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALST 212
Query: 299 ARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTA 358
+ + ++EG Y ++ GP+FETVAE +L+ G DAVGMSTV EVI A HCG+ V
Sbjct: 213 WKQMGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFG 272
Query: 359 FSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
FSLITNK + DY+ +ANHEEV+ AGK ++ V+ +++ I
Sbjct: 273 FSLITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASI 317
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; HET: XAN; 1.64A {Yersinia
pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A*
Length = 287
Score = 406 bits (1047), Expect = e-142
Identities = 111/277 (40%), Positives = 157/277 (56%), Gaps = 8/277 (2%)
Query: 128 YELIQSIAKFLLDS-ISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHK 186
EL K++ +P+I I GSGL + D IT+ Y IP FPVS+V GH
Sbjct: 15 NELPFQAVKYIQKIKPGFKPQIAFILGSGLGDLVDQITNDTTISYADIPGFPVSSVHGHA 74
Query: 187 GQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYE 246
G+LV G + G+P+MCM+GR H+YEG + P+R KL+G L TNAAG L P+
Sbjct: 75 GELVLGDLCGVPVMCMKGRGHFYEGKGMSIMTNPVRTFKLMGCEFLFCTNAAGSLRPEVL 134
Query: 247 VGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSS 306
G ++++KDHIN M PL+G N+DRFGPRF + AY+K LRA IA+ L++
Sbjct: 135 PGSVVMLKDHINTM---PGTPLVGPNDDRFGPRFFSLANAYDKDLRADMAKIAQQLDIP- 190
Query: 307 IVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC 366
+ EGV+ GP FET AE+ M++I G D VGMS V EV++A HCG+ V A + ITN
Sbjct: 191 -LTEGVFVSYPGPCFETPAEIRMMQIIGGDVVGMSVVPEVLSAAHCGLKVIALTAITNLA 249
Query: 367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
+ +HE+ ++ K+ ++ +
Sbjct: 250 --EGLSDVVLSHEQTLKFAKVASVNFTKLIEAFLKSK 284
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics
protein structure initiative, PSI, joint center for
structu genomics; HET: GUN; 2.01A {Thermotoga maritima}
SCOP: c.56.2.1
Length = 277
Score = 402 bits (1035), Expect = e-141
Identities = 107/276 (38%), Positives = 155/276 (56%), Gaps = 12/276 (4%)
Query: 125 SYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPG 184
+ + I+ F+ + ++ P I II GSG + + D I Y IP+FP TV G
Sbjct: 11 HHMMKKIEEARTFISERTNLSPDILIILGSGFGPFIEKVEDPVIIDYKDIPHFPQPTVEG 70
Query: 185 HKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD 244
H G+LVFG I+ P+M M GRFH YEG+ A P+ + K VGV ++ TNAAG +NP+
Sbjct: 71 HSGKLVFGRISDKPVMIMAGRFHLYEGHDPATVAFPVYLAKYVGVKGVVVTNAAGAINPE 130
Query: 245 YEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNM 304
++ G+I++++D IN M NPL G N+++ GPRFP M+ + + I L+
Sbjct: 131 FKPGEIILVRDIINFM---FRNPLRGPNDEKIGPRFPDMSSVVDPEWARK---IQERLS- 183
Query: 305 SSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364
+KEGVY + GP++ET AE+ + G D VGMSTV EVI A HCG+ V FS +TN
Sbjct: 184 ---LKEGVYIGVLGPSYETPAEIRVFEKLGADLVGMSTVPEVIAAKHCGLKVVVFSCVTN 240
Query: 365 KCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
+HEEV++ K+ I+ +T V
Sbjct: 241 MAAGITHG--RLSHEEVVRTTKMAQGKIEKALTTAV 274
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA,
glycosyltransferase, transferase; 1.80A {Streptococcus
mutans} PDB: 3lba_A*
Length = 303
Score = 400 bits (1029), Expect = e-140
Identities = 114/297 (38%), Positives = 159/297 (53%), Gaps = 10/297 (3%)
Query: 107 KTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDR 166
+ + A++T G G + I FL +P+ G+I GSGL +A+ I +
Sbjct: 17 RGSHMASMTGGQQMGRGSMSLLKKIYETRDFLTAKGVQKPEFGLILGSGLGELAEEIENA 76
Query: 167 HIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL 226
+ Y IP + STV GH G+L++G + G ++ +QGRFHYYEG + PIR+MK
Sbjct: 77 LVLNYADIPNWGRSTVSGHAGKLIYGELAGRKVLALQGRFHYYEGNSMELVTFPIRIMKA 136
Query: 227 VGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA 286
+G L+ TNAAGG+ + G +M I DHINL G NPL+G N D FG RFP M+ A
Sbjct: 137 LGCQGLIVTNAAGGIG--FGPGTLMAISDHINLT---GANPLMGENLDDFGFRFPDMSNA 191
Query: 287 YNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEV 346
Y R +A + + + EGVY + GP++ET AE+ + G DAVGMSTV EV
Sbjct: 192 YTADYREVAHQVADKIGIK--LDEGVYIGVSGPSYETPAEIRAFKTLGADAVGMSTVPEV 249
Query: 347 ITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
I A H G+ V S ITN +E NHEEV+ + K +V I+ +
Sbjct: 250 IVAVHSGLKVLGISAITNYAA---GFQSELNHEEVVAVTQQIKEDFKGLVKAILVEL 303
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex,
transferase; HET: IMH; 1.75A {Mycobacterium
tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A*
3iom_A*
Length = 268
Score = 376 bits (968), Expect = e-131
Identities = 87/279 (31%), Positives = 136/279 (48%), Gaps = 20/279 (7%)
Query: 125 SYTYELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSI-TDRHIFPYDTIPYFPVSTV 182
EL + A+ + D I + ++ GSG ++ + + P +P F T
Sbjct: 6 PDPDELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQAELPGFVPPTA 65
Query: 183 PGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242
GH G+L+ I ++ + GR H YEG+ L P+R + G ++ TNAAGGL
Sbjct: 66 AGHAGELLSVPIGAHRVLVLAGRIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLR 125
Query: 243 PDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDL 302
D +VG ++I DH+NL +PL G F + AY+ +LR ++AR
Sbjct: 126 ADLQVGQPVLISDHLNLT---ARSPL-------VGGEFVDLTDAYSPRLR----ELARQS 171
Query: 303 NMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLI 362
+ + EGVY+ + GP++ET AE+ ML+ G D VGMSTVHE I A G V SL+
Sbjct: 172 DPQ--LAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLV 229
Query: 363 TNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVS 401
TN +H EV+ AG + +++ +++
Sbjct: 230 TNLAA--GITGEPLSHAEVLAAGAASATRMGALLADVIA 266
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A
{Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A
Length = 266
Score = 363 bits (935), Expect = e-126
Identities = 79/278 (28%), Positives = 127/278 (45%), Gaps = 23/278 (8%)
Query: 125 SYTYELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSITD-RHIFPYDTIPYFPVSTV 182
+ + + ++ A + + + + ++ GSG A+ + + P IP F T
Sbjct: 8 TDPFLVARAAADHIAQATGVEGHDMALVLGSGWGGAAELLGEVVAEVPTHEIPGFSSVTR 67
Query: 183 PGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242
+ + + + R H YEG + +R G L+ TN GGLN
Sbjct: 68 SIR---VERADGSVRHALVLGSRTHLYEGKGVRAVVHGVRTAAATGAETLILTNGCGGLN 124
Query: 243 PDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDL 302
++ G +++ DHINL +PL GP F + Y+ +LR ++A +
Sbjct: 125 QEWGAGTPVLLSDHINLT---ARSPL-------EGPTFVDLTDVYSPRLR----ELAHRV 170
Query: 303 NMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLI 362
+ + + EGVY+ GP++ET AE+ M I G D VGMST E I A HCG+ V SL+
Sbjct: 171 DPT--LPEGVYAQFPGPHYETPAEVRMAGILGADLVGMSTTLEAIAARHCGLEVLGVSLV 228
Query: 363 TNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
TN +H EVI+AG+ GP I +++ I
Sbjct: 229 TNLAAGISP--TPLSHAEVIEAGQAAGPRISALLADIA 264
>1cb0_A Protein (5'-deoxy-5'-methylthioadenosine phosphor;
methylthioadenosine phosphorylase, purine nucleoside
phospho purine salvage, adenine; HET: ADE; 1.70A {Homo
sapiens} SCOP: c.56.2.1 PDB: 1cg6_A* 1k27_A* 1sd1_A*
1sd2_A* 3ozc_A* 3ozd_A* 3oze_A
Length = 283
Score = 125 bits (315), Expect = 3e-33
Identities = 71/282 (25%), Positives = 115/282 (40%), Gaps = 37/282 (13%)
Query: 140 DSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPI 199
+ + KIGII G+GL + + R DT P+ S L+ G I +
Sbjct: 4 GTTTTAVKIGIIGGTGLDDP-EILEGRTEKYVDT-PFGKPS------DALILGKIKNVDC 55
Query: 200 MCMQ--GRFHYYEGYPLWKCAMPIRV--------MKLVGVTHLLATNAAGGLNPDYEVGD 249
+ + GR H MP +V +K G TH++ T A G L + + GD
Sbjct: 56 VLLARHGRQHTI---------MPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGD 106
Query: 250 IMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVK 309
I+II I+ + G + G PM + + + R ++ A+ L +
Sbjct: 107 IVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLR-CHS 165
Query: 310 EGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTD 369
+G I GP F + AE M R G D + M+TV EV+ A G+ + ++ TD
Sbjct: 166 KGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAM-----ATD 220
Query: 370 YD----DHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQ 407
YD + + V++ K KS++ + IG +
Sbjct: 221 YDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTE 262
>3ozb_A Methylthioadenosine phosphorylase;
5'-methylthioinosine,phosphorylase, transferase; HET:
HPA; 2.80A {Pseudomonas aeruginosa}
Length = 259
Score = 123 bits (312), Expect = 4e-33
Identities = 56/269 (20%), Positives = 98/269 (36%), Gaps = 39/269 (14%)
Query: 146 PKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ-- 203
II G+GL+ + + +T P +T PY S L G G ++ +
Sbjct: 16 SVYAIIGGTGLTQL-EGLTLSESLPIET-PYGAPS------APLQRGRYAGREVLFLARH 67
Query: 204 GRFHYYEGYPLWKCAMP--------IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKD 255
G H + P + +K G ++A NA GG++ G + +
Sbjct: 68 GHPHRF---------PPHQVNYRANLWALKQAGAEAVIAVNAVGGIHAAMGTGHLCVPHQ 118
Query: 256 HINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSV 315
I+ + D + Y++ LR ++ R L ++ GVY+
Sbjct: 119 LID---YTSGREHTYFAGDIEHVTHIDFSHPYDEPLRQRLIEALRALGLA-HSSHGVYAC 174
Query: 316 IGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYD---D 372
GP ETVAE+ L G D VGM+ + E A + +L V +
Sbjct: 175 TQGPRLETVAEIARLERDGNDIVGMTGMPEAALARELDLPYACLAL-----VVNPAAGKS 229
Query: 373 HAEANHEEVIQAGKLRGPMIKSMVTRIVS 401
E+ QA ++ ++ R+++
Sbjct: 230 AGIITMAEIEQALHDGIGKVREVLARVLA 258
>2a8y_A 5'-methylthioadenosine phosphorylase (MTAP); alpha/beta, beta
sheet, beta barrel, transferase; HET: MTA; 1.45A
{Sulfolobus solfataricus} PDB: 3t94_A* 1v4n_A
Length = 270
Score = 119 bits (301), Expect = 2e-31
Identities = 66/291 (22%), Positives = 103/291 (35%), Gaps = 63/291 (21%)
Query: 139 LDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIP 198
+ + + IGII GSGL ++ T PY S + G I
Sbjct: 1 MIEQNEKASIGIIGGSGLYDP-GIFSESKEIKVYT-PYGQPS------DFITIGKIGNKS 52
Query: 199 IMCMQ--GRFHYYEGYPLWKCAMPIRV--------MKLVGVTHLLATNAAGGLNPDYEVG 248
+ + GR H P ++ +K +GV +++ +A G L DY++G
Sbjct: 53 VAFLPRHGRGHRI---------PPHKINYRANIWALKELGVRWVISVSAVGSLRMDYKLG 103
Query: 249 DIMIIKDHINLMGFAGNNPLLGVNEDRFGPR-----------FPPMNKAYNKQLRAATLD 297
D +I I D R M + LR ++
Sbjct: 104 DFVIPDQFI----------------DMTKNREYSFFDGPVVAHVSMADPFCNSLRKLAIE 147
Query: 298 IARDLNMSSIVKEGVYSVIGGPNFETVAELNMLR-ICGVDAVGMSTVHEVITAHHCGMTV 356
A++LN+ + G Y I GP F T AE R + D +GM+ V EV A M
Sbjct: 148 TAKELNI-KTHESGTYICIEGPRFSTRAESRTWREVYKADIIGMTLVPEVNLACEAQMCY 206
Query: 357 TAFSLITNKCVTDYD--DHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405
++ VTDYD EEV + K ++ ++ + E
Sbjct: 207 ATIAM-----VTDYDVFAEIPVTAEEVTRVMAENTEKAKKLLYALIQKLPE 252
>1wta_A 5'-methylthioadenosine phosphorylase; A/B structure, transferase;
HET: ADE; 1.78A {Aeropyrum pernix}
Length = 275
Score = 115 bits (290), Expect = 9e-30
Identities = 61/289 (21%), Positives = 101/289 (34%), Gaps = 64/289 (22%)
Query: 143 SIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCM 202
+R +G+I GSGL + + T PY S +V G + G+ + +
Sbjct: 9 GVRAHVGVIGGSGLYDP-GIVENPVEVKVST-PYGNPS------DFIVVGDVAGVKVAFL 60
Query: 203 Q--GRFHYYEGYPLWKCAMPIRV--------MKLVGVTHLLATNAAGGLNPDYEVGDIMI 252
GR H P + +K +GV +++ +A G L DY GD ++
Sbjct: 61 PRHGRGHRI---------PPHAINYRANIWALKALGVKWVISVSAVGSLREDYRPGDFVV 111
Query: 253 IKDHINLMGFAGNNPLLGVNEDRFGPRFP------------PMNKAYNKQLRAATLDIAR 300
I D R M + + LR +D R
Sbjct: 112 PDQFI----------------DMTKNRRHYTFYDGPVTVHVSMADPFCEDLRQRLIDSGR 155
Query: 301 DLNMSSIVKEGVYSVIGGPNFETVAELNMLR-ICGVDAVGMSTVHEVITAHHCGMTVTAF 359
L + + + G Y I GP F T AE + + + D +GM+ V E+ A +
Sbjct: 156 RLGYT-VHERGTYVCIEGPRFSTRAESRVWKDVFKADIIGMTLVPEINLACEAQLCYATL 214
Query: 360 SLITNKCVTDYD--DHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEH 406
++ VTDYD EEV + + M+ ++ +
Sbjct: 215 AM-----VTDYDVWADRPVTAEEVERVMISNVERARRMLYDVIPKLAGE 258
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 90.4 bits (224), Expect = 2e-19
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 77 NSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYT-YELI 131
S++ + K+ + R KPH N+GTIGHVDHGKTTLTAAIT L + G+ ++ I
Sbjct: 279 MSKQSHMSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI 334
Score = 79.6 bits (196), Expect = 4e-16
Identities = 25/47 (53%), Positives = 32/47 (68%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGII 56
D E+ ELVEME+RELL++ + GD+ P V+GSAL ALEG I
Sbjct: 427 DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKI 473
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 83.8 bits (208), Expect = 8e-18
Identities = 23/41 (56%), Positives = 26/41 (63%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGS 125
K + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2 KGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNV 42
Score = 77.2 bits (191), Expect = 1e-15
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGIIPLYPNDKFEINKL 69
D E+ +LVEME+R+LL + + GDEVP ++GSAL ALE +I +L
Sbjct: 143 DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWEL 202
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 81.1 bits (201), Expect = 5e-17
Identities = 30/45 (66%), Positives = 39/45 (86%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIG 54
D+EM ELVE+E+RELLTE G+KG+E P + GSALCALE ++PE+G
Sbjct: 134 DSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELG 178
Score = 77.6 bits (192), Expect = 7e-16
Identities = 29/41 (70%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYT-YELI 131
KPH N+GTIGHVDHGKTTLTAAITK L EG + YE I
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEI 41
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 72.7 bits (179), Expect = 3e-14
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 88 YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRP- 146
+ + +P NIG +GHVDHGKTTL AIT LG + + +P
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG-------YAETNIGVCESCKKPE 54
Query: 147 --KIGIIC 152
C
Sbjct: 55 AYVTEPSC 62
Score = 42.2 bits (100), Expect = 2e-04
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 3/41 (7%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE 50
E + G + VP + SAL +
Sbjct: 144 KEEALSQYRQIKQFTK---GTWAENVPIIPVSALHKINIDS 181
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 71.5 bits (176), Expect = 8e-14
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 83 AEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITK 116
EK + NIG +GHVDHGKTTLT A+T
Sbjct: 1 GEK--RKSRQAEVNIGMVGHVDHGKTTLTKALTG 32
Score = 36.1 bits (84), Expect = 0.017
Identities = 6/41 (14%), Positives = 10/41 (24%), Gaps = 3/41 (7%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE 50
+ E + G + P + SAL
Sbjct: 152 KEKALENYRQIKEFIE---GTVAENAPIIPISALHGANIDV 189
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 70.1 bits (172), Expect = 3e-13
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 82 YAEKQVYSRDKPH-----CNIGTIGHVDHGKTTLTAAITK 116
+ +PH N+G GH+DHGKTTL+ +T+
Sbjct: 2 HHHHHHSIEGRPHMDFKNINLGIFGHIDHGKTTLSKVLTE 41
Score = 54.0 bits (130), Expect = 5e-08
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 6 IDAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE 50
D A E + EM M+ +L + SA E
Sbjct: 135 SDNAGTEEIKRTEMIMKSILQST-HNLKNSSIIPISAKTGFGVDE 178
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 69.6 bits (171), Expect = 4e-13
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 90 RDKPHCNIGTIGHVDHGKTTLTAAITK 116
+ NIG +GHVDHGKT+LT A+T
Sbjct: 4 GSQAEVNIGMVGHVDHGKTSLTKALTG 30
Score = 33.8 bits (78), Expect = 0.086
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSAL 43
+ + E E + G + P + SA
Sbjct: 150 EKQAEENYEQIKEFVK---GTIAENAPIIPISAH 180
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 63.0 bits (154), Expect = 4e-11
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITK 116
+ R N+ IG G+T+L A + K
Sbjct: 12 SGLVPRGSHMANVAIIGTEKSGRTSLAANLGK 43
Score = 51.0 bits (123), Expect = 3e-07
Identities = 4/50 (8%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 6 IDAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGI 55
D+ + ++ +++ + + G + + + + + P G+
Sbjct: 122 SDSTHMHAIDELKAKLKVITS--GTVLQDWECISLNTNKSAKN--PFEGV 167
Score = 35.2 bits (82), Expect = 0.028
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 97 IGTIGHVDHGKTTLTAAITKGLMEGMLG 124
+G+ H H + L + ++G
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMANVAIIG 28
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 3e-06
Identities = 92/527 (17%), Positives = 158/527 (29%), Gaps = 182/527 (34%)
Query: 8 AADAEMAELVEMEMREL-----LTEMGWKGDEVPFVKGSALCA-----LEGKEPEIGIIP 57
AAD E E+ + L L E G + L LEG +
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN-LCLTEFENCYLEGNDIHALAAK 107
Query: 58 LYPNDKFEINKLNVFVPLINSRRGYAEKQVYSR---DKPHCNIGTIGHVDHGKTTLTAAI 114
L + + K + + Y ++ ++ DK + V G L AI
Sbjct: 108 LLQENDTTLVKTKELI------KNYITARIMAKRPFDKKSNSA-LFRAVGEGNAQL-VAI 159
Query: 115 TKGLMEGMLGSY---------TY-----ELIQSIAKFLLDSISIRPKIGIICGSGLSTIA 160
G +G Y TY +LI+ A+ L + I + GL+ I
Sbjct: 160 FGG--QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-IL 216
Query: 161 DSITDRHIFP---Y-DTIPY-FPVSTV----------------PGHKGQLVFGLINGIPI 199
+ + + P Y +IP P+ V PG + + G
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE----LRSYLKGA-T 271
Query: 200 MCMQG--------------------------------RFHYYEGYPLWKCAMPIRVMK-- 225
QG R + E YP ++P +++
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY--EAYP--NTSLPPSILEDS 327
Query: 226 -------------LVGVT------HLLATNAAGGLNPDYEVGDIMII--KDHINLMGFA- 263
+ +T ++ TN+ P + +I ++ ++ + G
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL---PAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 264 ---GNNPLL-------GVNEDR---------FGPRFPPMNKAYNKQ-LRAATLDIARDLN 303
G N L G+++ R F RF P+ ++ L A+ I +DL
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 304 MSSIVKEG------VYSVIGGPNFETVAELNMLRICGVDAVGMSTVH-EVIT---AHHC- 352
+++ VY G + ++ RI D + V E T A H
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV--DCIIRLPVKWETTTQFKATHIL 502
Query: 353 ----GMTVTAFSLITNKCVTDYDDHAEANHE----EVIQAGKL-RGP 390
G + ++T++ N + VI AG L P
Sbjct: 503 DFGPG-GASGLGVLTHR-----------NKDGTGVRVIVAGTLDINP 537
Score = 40.4 bits (94), Expect = 0.001
Identities = 56/312 (17%), Positives = 93/312 (29%), Gaps = 112/312 (35%)
Query: 1 MAVYYIDAAD--AEMAELVEMEMRELLTEMGWKGDEV-PFVKGSALCALEGKEPEIGIIP 57
AV I D V + +L +G + E P + E G+ P
Sbjct: 279 TAVA-IAETDSWESFFVSVR-KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV-P 335
Query: 58 ---L----YPNDKFE--INKLN--------VFVPLINSRR-----GYAE----------- 84
L ++ + +NK N V + L+N + G +
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 85 ----------KQVYSRDKPHCNIG--TIG---HVDHGKTTLTAAITKGLMEGMLGSYTYE 129
+ +S K + + H L A + + + +
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL----LVPA-SDLINK--------D 442
Query: 130 LIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPV------STVP 183
L+++ F I I P GS L ++ SI++R + D I PV
Sbjct: 443 LVKNNVSFNAKDIQI-PVYDTFDGSDLRVLSGSISERIV---DCIIRLPVKWETTTQFKA 498
Query: 184 GHKGQLVFG--LINGIPIMC---MQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAA 238
H L FG +G+ ++ G G +RV+ A
Sbjct: 499 TH--ILDFGPGGASGLGVLTHRNKDGT-----G---------VRVI------------VA 530
Query: 239 GGL--NPDYEVG 248
G L NPD + G
Sbjct: 531 GTLDINPDDDYG 542
Score = 35.4 bits (81), Expect = 0.043
Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 51/165 (30%)
Query: 16 LVEMEMRELLTEMGWKGDEVPFVKG------SALCALEGKEPEIGIIPLYPNDKFEINKL 69
L+E E L G + F G +AL +L ++ + E+
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFA-GHSLGEYAALASLA------DVMSI--ESLVEV--- 1785
Query: 70 NVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGK--TTLTAAITKGLMEGMLGSYT 127
VF RG + RD+ + + ++ G+ + + + ++E +G T
Sbjct: 1786 -VF------YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER-VGKRT 1837
Query: 128 YELIQSIAKF---------------------LLDSISIRPKIGII 151
L++ I + +L+ I ++ KI II
Sbjct: 1838 GWLVE-IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ-KIDII 1880
Score = 30.4 bits (68), Expect = 1.4
Identities = 41/216 (18%), Positives = 69/216 (31%), Gaps = 64/216 (29%)
Query: 139 LDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIP 198
+D+ S RP + G S+ H+ T +F S QL
Sbjct: 1 MDAYSTRP---LTLSHG------SL--EHVLLVPTASFFIAS-------QL--------- 33
Query: 199 IMCMQGRFHYYEGYP---LWKCAMPIRVMKLVG-----VTHLLATNAAGGLNPDYEVGDI 250
Q +F+ P P +LVG V+ L+ + G + +V ++
Sbjct: 34 ----QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD---QVLNL 86
Query: 251 MIIKDHINLMGFAGNN------PLLGVNEDRFGPRFPPMNKAYNKQLRA-ATLDIARDLN 303
+ + + GN+ LL N+ + K Y + A D
Sbjct: 87 CLTEFENCYLE--GNDIHALAAKLLQENDTTLVKTKELI-KNY---ITARIMAKRPFDKK 140
Query: 304 MSSI----VKEG---VYSVIGG--PNFETVAELNML 330
+S V EG + ++ GG + EL L
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 44.3 bits (105), Expect = 5e-05
Identities = 14/63 (22%), Positives = 24/63 (38%)
Query: 49 KEPEIGIIPLYPNDKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKT 108
+E E ND+ + + ++ + PH + +GHVD GK+
Sbjct: 122 EESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSFVVLGHVDAGKS 181
Query: 109 TLT 111
TL
Sbjct: 182 TLM 184
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 43.0 bits (102), Expect = 1e-04
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 85 KQVYSRDKPHCNIGTIGHVDHGKTTLT 111
PH + +GHVD GK+TL
Sbjct: 24 SAFVKSALPHLSFVVLGHVDAGKSTLM 50
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 42.8 bits (101), Expect = 2e-04
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 89 SRDKPHCNIGTIGHVDHGKTTLT 111
S KP ++ GHVD GK+T+
Sbjct: 172 SNPKPVVHLVVTGHVDSGKSTML 194
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 42.3 bits (100), Expect = 2e-04
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 89 SRDKPHCNIGTIGHVDHGKTTLT 111
++K H N+ IGHVD GK+T T
Sbjct: 2 GKEKSHINVVVIGHVDSGKSTTT 24
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 41.9 bits (99), Expect = 3e-04
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 91 DKPHCNIGTIGHVDHGKTTLT 111
KPH N+ IGHVDHGK+TL
Sbjct: 3 QKPHLNLIVIGHVDHGKSTLV 23
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 41.6 bits (98), Expect = 3e-04
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 91 DKPHCNIGTIGHVDHGKTTLT 111
K H NI IGHVD GK+TL
Sbjct: 40 GKEHVNIVFIGHVDAGKSTLG 60
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 39.6 bits (92), Expect = 0.002
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 96 NIGTIGHVDHGKTTLT 111
N+ I HVDHGK+TLT
Sbjct: 21 NMSVIAHVDHGKSTLT 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.025
Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 34/132 (25%)
Query: 9 ADAEMAELVEM-----EMRELLTEMGWKGDEV--PFVKG----------SALCALEGKEP 51
+ E+ ++ L + K +E+ FV+ S + E ++P
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQP 105
Query: 52 EIGII-------PLYPNDKFEINKLNVFVPLINSR-RGYAE-KQVYSRDKPHCNIGTIGH 102
+ LY ND K NV SR + Y + +Q +P N+ G
Sbjct: 106 SMMTRMYIEQRDRLY-NDNQVFAKYNV------SRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 103 VDHGKTTLTAAI 114
+ GKT + +
Sbjct: 159 LGSGKTWVALDV 170
Score = 29.1 bits (64), Expect = 3.9
Identities = 50/366 (13%), Positives = 103/366 (28%), Gaps = 126/366 (34%)
Query: 3 VYYIDAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGII---PLY 59
+++++ + E V +++LL ++ + + + E+ + Y
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 60 PN---------DKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNI---GTIGHV--DH 105
N + N N+ ++ + +R K + T H+ DH
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKIL----------LTTRFKQVTDFLSAATTTHISLDH 293
Query: 106 GKTTLTAAITKGLMEGMLGSYTYEL---IQSIAKFLLDSI--SIRPKIGII-------CG 153
TLT K L+ L +L + + L I SIR + C
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 154 SGLSTIADSITD------RH------IFP--------------YDTIPYFP--------- 178
+ I S+ R +FP +D I
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 179 -----------VSTVPG---------------HKGQLV--FGLI-----NGIPIMCMQGR 205
++P H+ +V + + + + +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHR-SIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 206 FHYYEGYPLWKCAMPIRVM--------------KLVGVTHLLATNAAGGLNPDYEVGDIM 251
F+ + G+ L P R+ K+ + A NA+G + + +
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS--TAWNASGSILNT--LQQLK 528
Query: 252 IIKDHI 257
K +I
Sbjct: 529 FYKPYI 534
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 35.6 bits (83), Expect = 0.026
Identities = 12/13 (92%), Positives = 12/13 (92%), Gaps = 1/13 (7%)
Query: 99 TI-GHVDHGKTTL 110
TI GHVDHGKTTL
Sbjct: 8 TIMGHVDHGKTTL 20
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 35.2 bits (82), Expect = 0.040
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 96 NIGTIGHVDHGKTTLTAAI 114
+ +GH GKTTLT A+
Sbjct: 11 TVALVGHAGSGKTTLTEAL 29
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 34.0 bits (79), Expect = 0.079
Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 99 TI-GHVDHGKTTLTAAI 114
TI GHVDHGKT+L I
Sbjct: 8 TIMGHVDHGKTSLLEYI 24
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 32.6 bits (75), Expect = 0.12
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 101 GHVDHGKTTLTAAITK 116
GHVDHGKTTL AI
Sbjct: 15 GHVDHGKTTLLDAIRH 30
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 33.8 bits (78), Expect = 0.12
Identities = 10/10 (100%), Positives = 10/10 (100%)
Query: 101 GHVDHGKTTL 110
GHVDHGKTTL
Sbjct: 12 GHVDHGKTTL 21
>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain,
hydrolase, signaling PR; HET: C2E FMN; 2.05A {Klebsiella
pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A*
2kb2_A*
Length = 413
Score = 33.1 bits (76), Expect = 0.16
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 10/45 (22%)
Query: 294 ATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAV 338
+ + DL ++ +V EGV ET+ E L+ G+
Sbjct: 352 SVVRCCEDLGIT-VVAEGV---------ETLEEWCWLQSVGIRLF 386
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET:
EPE; 2.50A {Pseudomonas aeruginosa}
Length = 400
Score = 33.1 bits (76), Expect = 0.16
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 10/46 (21%)
Query: 293 AATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAV 338
++ + +A+ L +S +V EGV E+ + L G
Sbjct: 336 SSVVALAQALGIS-LVVEGV---------ESDEQRVRLIELGCSIA 371
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 31.9 bits (73), Expect = 0.37
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 91 DKPHCNIGTIGHVDHGKTTL 110
K T G+VD GK+TL
Sbjct: 21 RKEMLRFLTCGNVDDGKSTL 40
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase;
HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB:
3hv9_A
Length = 268
Score = 31.3 bits (72), Expect = 0.52
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 10/46 (21%)
Query: 293 AATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAV 338
+ + SIV V E+ + L L G +
Sbjct: 212 KGLIAELHEQQKLSIV-PFV---------ESASVLATLWQAGATYI 247
>1ybf_A AMP nucleosidase; structural genomics, protein structure
initiative, PSI, NEW research center for structural
genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron}
SCOP: c.56.2.1
Length = 268
Score = 30.6 bits (69), Expect = 0.76
Identities = 18/155 (11%), Positives = 39/155 (25%), Gaps = 24/155 (15%)
Query: 196 GIPIMCMQGRFHYYEGYPLWKCAMPI---------RVMKLVGVTHLLATNAAGGLNPDYE 246
G+PI+ + + ++ + ++ GGL +
Sbjct: 46 GVPIVGEHTSMPNASAEGVTLINFGMGSANAATIMDLLWAIHPKAVIFLGKCGGLKLENA 105
Query: 247 VGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSS 306
+GD ++ G + D P + + + A ++
Sbjct: 106 LGDYLLPI---------AAIRGEGTSNDYLPEEVPSL---PSFSVLRAISSAIQNKGK-- 151
Query: 307 IVKEGVYSVIGGPNFETVAELN-MLRICGVDAVGM 340
G +E + LR V M
Sbjct: 152 DYWTGTVYTTNRRVWEYDEKFKDYLRSTHASGVDM 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 30.9 bits (71), Expect = 0.94
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 96 NIGTIGHVDHGKTTLT 111
NIG + H+D GKTT T
Sbjct: 12 NIGIMAHIDAGKTTTT 27
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 30.6 bits (70), Expect = 0.97
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 96 NIGTIGHVDHGKTTLT 111
NIG H+D GKTT T
Sbjct: 12 NIGISAHIDAGKTTTT 27
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 30.5 bits (70), Expect = 1.00
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 96 NIGTIGHVDHGKTTLT 111
NIG H+D GKTT T
Sbjct: 14 NIGIAAHIDAGKTTTT 29
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine
nucleosidase; MTAN, alpha and beta proteins, hydrolase;
HET: FMC; 1.70A {Staphylococcus aureus}
Length = 230
Score = 30.0 bits (68), Expect = 1.1
Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 22/121 (18%)
Query: 228 GVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGP---RFPPMN 284
++ T +AG L+ VGD++I D + FG + P M
Sbjct: 68 KPDVIINTGSAGALDESLNVGDVLISDDVKYHD----------ADATAFGYEYGQIPQMP 117
Query: 285 KAY--NKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF-ETVAELNMLR--ICGVDAVG 339
A+ +K L + + ++ K G+ ++ G +F +V + ++ AV
Sbjct: 118 VAFQSSKPLIEKVSQVVQQQQLT--AKVGL--IVSGDSFIGSVEQRQKIKKAFPNAMAVE 173
Query: 340 M 340
M
Sbjct: 174 M 174
>2bas_A YKUI protein; EAL domain, structural genom protein structure
initiative, midwest center for structural genomics,
MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP:
c.1.33.1 d.110.6.2 PDB: 2w27_A*
Length = 431
Score = 30.1 bits (68), Expect = 1.5
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 10/43 (23%)
Query: 294 ATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVD 336
+ +AR + + ++ E + E +L G
Sbjct: 218 SISLLARKIGAA-LLYEDI---------EANFQLQYAWRNGGR 250
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain,
C-DI-GMP receptor, lyase; 2.00A {Pseudomonas
fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Length = 430
Score = 29.7 bits (68), Expect = 1.6
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 294 ATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAV 338
A A +++ ++ E V ET EL+++R G+ V
Sbjct: 384 AIQRAAHSIDLP-LIAERV---------ETEGELSVIREMGLYGV 418
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase;
EAL-domain, structural genomics, PSI-2; 2.00A {Listeria
monocytogenes}
Length = 235
Score = 29.4 bits (67), Expect = 1.8
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 10/46 (21%)
Query: 293 AATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAV 338
A + A+ + +V EG+ ET + +L GV
Sbjct: 189 KAWANFAQKNKLDFVV-EGI---------ETKETMTLLESHGVSIF 224
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein,
transferase; 1.60A {Sulfolobus solfataricus} SCOP:
c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A
1je1_A* 1jp7_A 1jpv_A
Length = 236
Score = 29.0 bits (65), Expect = 2.3
Identities = 15/122 (12%), Positives = 37/122 (30%), Gaps = 12/122 (9%)
Query: 217 CAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRF 276
A+ + + ++G + G L P +G+ +I+ G ++
Sbjct: 69 IAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGAS---------YNQGGLFYQY 119
Query: 277 GPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIG--GPNFETVAELNMLRICG 334
+ + +L + N+ V+S + E V + +
Sbjct: 120 LRDNACVASTPDFELTNKLVTSFSKRNL-KYYVGNVFSSDAFYAEDEEFVKKWSSRGNIA 178
Query: 335 VD 336
V+
Sbjct: 179 VE 180
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase;
2.99A {Pseudomonas aeruginosa PAO1}
Length = 437
Score = 29.3 bits (67), Expect = 2.5
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 10/46 (21%)
Query: 293 AATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAV 338
+ + SIV V E+ + L L G +
Sbjct: 381 KGLIAELHEQQKLSIV-PFV---------ESASVLATLWQAGATYI 416
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD
1; structural genomics, PSI-biology; 2.68A
{Synechocystis SP} PDB: 2l8v_A
Length = 154
Score = 28.3 bits (63), Expect = 2.7
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 144 IRPKIGIICGSGLSTIADSITD----RHIFPYDTIPYFPVSTVPGHKG 187
+ + + G DS D + F + +PY+ + G +
Sbjct: 102 VIFHLDLYENQGFDADIDSYIDSVEYQENFGENIVPYYRFNNQVGLEH 149
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter
pylori} PDB: 3nm5_A* 3nm4_A*
Length = 230
Score = 28.5 bits (64), Expect = 3.1
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 228 GVTHLLATNAAGGLNPDYEVGDIMIIKDHINL-MGFAGNNPLLGVNEDRFGPRFPPMNKA 286
GV +L + AG L D ++ D+++ + + + + LG F P +
Sbjct: 69 GVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLG-----FIPESAIFIET 123
Query: 287 YNKQLRAATLDIARDLNMSSIVKEGV 312
+ L A IA + +++ +KEGV
Sbjct: 124 -SGSLNALAKKIANEQHIA--LKEGV 146
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 29.0 bits (66), Expect = 3.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 100 IGHVDHGKTTL 110
I HVDHGK+TL
Sbjct: 12 IAHVDHGKSTL 22
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 29.0 bits (66), Expect = 3.8
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 100 IGHVDHGKTTL 110
I H+DHGK+TL
Sbjct: 10 IAHIDHGKSTL 20
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, signaling protein;
HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Length = 259
Score = 28.2 bits (64), Expect = 4.2
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 10/45 (22%)
Query: 294 ATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAV 338
+ + + +DL++ +V EGV E + L+ G D
Sbjct: 200 SVVKLGQDLDLE-VVAEGV---------ENAEMAHALQSLGCDYG 234
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT;
1.75A {Escherichia coli} PDB: 1jys_A* 1nc1_A* 1nc3_A*
1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A*
Length = 234
Score = 27.8 bits (62), Expect = 5.6
Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 33/184 (17%)
Query: 228 GVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFG---PRFPPMN 284
++ T +AGGL P +VGDI++ + + FG + P
Sbjct: 69 KPDVIINTGSAGGLAPTLKVGDIVVSDEARY----------HDADVTAFGYEYGQLPGCP 118
Query: 285 KAY--NKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF-ETVAELNMLR--ICGVDAVG 339
+ + +L AA +LN++ G ++ G F L +R AV
Sbjct: 119 AGFKADDKLIAAAEACIAELNLN--AVRG--LIVSGDAFINGSVGLAKIRHNFPQAIAVE 174
Query: 340 M--STVHEVITAHHCGMTVTAFSLITNKCVTDY-DDHAEANHEE-VIQAGKLRGPMIKSM 395
M + + AH C F ++ + ++D D + + +E + A K M++S+
Sbjct: 175 MEATAI-----AHVCHNFNVPFVVV--RAISDVADQQSHLSFDEFLAVAAKQSSLMVESL 227
Query: 396 VTRI 399
V ++
Sbjct: 228 VQKL 231
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP; 1.70A
{Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Length = 158
Score = 27.2 bits (61), Expect = 5.9
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 106 GKTTLTAAITKGL-MEGMLGSYTYELIQS 133
GKTTLT + +G+ +G + S TY L++
Sbjct: 45 GKTTLTRGMLQGIGHQGNVKSPTYTLVEE 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.3 bits (60), Expect = 6.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 96 NIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYEL 130
I G GKTTL I + L + +G +T E+
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEV 36
>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold,
hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP:
c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A
Length = 484
Score = 28.0 bits (62), Expect = 7.0
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 227 VGVTHLLATNAAGGLNPDYEVGDIMI 252
+ L GGL +GD ++
Sbjct: 295 LRPDVWLMIGHCGGLRESQAIGDYVL 320
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase;
transition state, inhibitor, hydrolase; HET: MTM; 1.60A
{Streptococcus pneumoniae R6} PDB: 3mms_A*
Length = 230
Score = 27.5 bits (61), Expect = 7.8
Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 33/184 (17%)
Query: 228 GVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRF--PPMNK 285
V L+ T +AG + VGD++I V+ FG +
Sbjct: 67 QVDALINTGSAGAVAEGIAVGDVVIADKLAY----------HDVDVTAFGYAYGQMAQQP 116
Query: 286 AY---NKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF-ETVAELNMLR--ICGVDAVG 339
Y +K A + L+ + G + G +F ++ ++ V AV
Sbjct: 117 LYFESDKTFVAQIQESLSQLDQN--WHLG--LIATGDSFVAGNDKIEAIKSHFPEVLAVE 172
Query: 340 M--STVHEVITAHHCGMTVTAFSLITNKCVTDY-DDHAEANHEE-VIQAGKLRGPMIKSM 395
M + + A +I + ++D + A +E +I+AG+ ++ +
Sbjct: 173 MEGAAI-----AQAAHTLNLPVLVI--RAMSDNANHEANIFFDEFIIEAGRRSAQVLLAF 225
Query: 396 VTRI 399
+ +
Sbjct: 226 LKAL 229
>3cb0_A 4-hydroxyphenylacetate 3-monooxygenase; corrin reductase, COBR,
six-stranded anti-parallel beta- barrel, oxidoreductase;
HET: FMN; 1.60A {Brucella melitensis}
Length = 173
Score = 26.8 bits (60), Expect = 9.3
Identities = 5/19 (26%), Positives = 9/19 (47%), Gaps = 4/19 (21%)
Query: 346 VITAHH----CGMTVTAFS 360
++T G+T+TA
Sbjct: 32 IVTTAGAAGRRGLTLTAAC 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.418
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,523,811
Number of extensions: 415445
Number of successful extensions: 1136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1095
Number of HSP's successfully gapped: 87
Length of query: 412
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 316
Effective length of database: 4,021,377
Effective search space: 1270755132
Effective search space used: 1270755132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)