RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9643
(412 letters)
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow
(Bos taurus) [TaxId: 9913]}
Length = 284
Score = 276 bits (707), Expect = 6e-92
Identities = 149/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
M YTYE Q AK+LL RP++ +ICGSGL + + +T F Y IP FP ST
Sbjct: 1 MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
VPGH G+LVFG++NG + MQGRFH YEGYP WK P+RV +L+GV L+ TNAAGGL
Sbjct: 61 VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R +
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
+ ++EG Y ++GGPNFETVAE +LR G DAVGMSTV EVI A HCG+ V FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
ITNK + D + +ANHEEV++AGK ++ V+ +++ I
Sbjct: 241 ITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282
>d1vmka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Thermotoga maritima [TaxId: 2336]}
Length = 265
Score = 239 bits (611), Expect = 9e-78
Identities = 107/273 (39%), Positives = 154/273 (56%), Gaps = 12/273 (4%)
Query: 128 YELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKG 187
+ I+ F+ + ++ P I II GSG + + D I Y IP+FP TV GH G
Sbjct: 2 MKKIEEARTFISERTNLSPDILIILGSGFGPFIEKVEDPVIIDYKDIPHFPQPTVEGHSG 61
Query: 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEV 247
+LVFG I+ P+M M GRFH YEG+ A P+ + K VGV ++ TNAAG +NP+++
Sbjct: 62 KLVFGRISDKPVMIMAGRFHLYEGHDPATVAFPVYLAKYVGVKGVVVTNAAGAINPEFKP 121
Query: 248 GDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSI 307
G+I++++D IN F NPL G N+++ GPRFP M+ + + R +
Sbjct: 122 GEIILVRDIIN---FMFRNPLRGPNDEKIGPRFPDMSSVVDPEWA-------RKIQERLS 171
Query: 308 VKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV 367
+KEGVY + GP++ET AE+ + G D VGMSTV EVI A HCG+ V FS +TN
Sbjct: 172 LKEGVYIGVLGPSYETPAEIRVFEKLGADLVGMSTVPEVIAAKHCGLKVVVFSCVTNMAA 231
Query: 368 TDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
H +HEEV++ K+ I+ +T V
Sbjct: 232 --GITHGRLSHEEVVRTTKMAQGKIEKALTTAV 262
>d1g2oa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 262
Score = 238 bits (609), Expect = 2e-77
Identities = 83/276 (30%), Positives = 128/276 (46%), Gaps = 20/276 (7%)
Query: 128 YELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSI-TDRHIFPYDTIPYFPVSTVPGH 185
EL + A+ + D I + ++ GSG ++ + + P +P F T GH
Sbjct: 3 DELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQAELPGFVPPTAAGH 62
Query: 186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
G+L+ I ++ + GR H YEG+ L P+R + G ++ TNAAGGL D
Sbjct: 63 AGELLSVPIGAHRVLVLAGRIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLRADL 122
Query: 246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
+VG ++I DH+NL G F + AY+ +LR
Sbjct: 123 QVGQPVLISDHLNLTA----------RSPLVGGEFVDLTDAYSPRLRELARQSDPQ---- 168
Query: 306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
+ EGVY+ + GP++ET AE+ ML+ G D VGMSTVHE I A G V SL+TN
Sbjct: 169 --LAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTNL 226
Query: 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVS 401
+H EV+ AG + +++ +++
Sbjct: 227 A--AGITGEPLSHAEVLAAGAASATRMGALLADVIA 260
>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Cellulomonas sp. [TaxId: 40001]}
Length = 266
Score = 221 bits (563), Expect = 2e-70
Identities = 78/278 (28%), Positives = 122/278 (43%), Gaps = 23/278 (8%)
Query: 125 SYTYELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSITD-RHIFPYDTIPYFPVSTV 182
+ + + ++ A + + + + ++ GSG A+ + + P IP F T
Sbjct: 8 TDPFLVARAAADHIAQATGVEGHDMALVLGSGWGGAAELLGEVVAEVPTHEIPGFSSVTR 67
Query: 183 PGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242
+ + + + R H YEG + +R G L+ TN GGLN
Sbjct: 68 SIR---VERADGSVRHALVLGSRTHLYEGKGVRAVVHGVRTAAATGAETLILTNGCGGLN 124
Query: 243 PDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDL 302
++ G +++ DHINL +PL GP F + Y+ +LR +
Sbjct: 125 QEWGAGTPVLLSDHINLT---ARSPL-------EGPTFVDLTDVYSPRLRELAHRVDPT- 173
Query: 303 NMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLI 362
+ EGVY+ GP++ET AE+ M I G D VGMST E I A HCG+ V SL+
Sbjct: 174 -----LPEGVYAQFPGPHYETPAEVRMAGILGADLVGMSTTLEAIAARHCGLEVLGVSLV 228
Query: 363 TNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
TN +H EVI+AG+ GP I +++ I
Sbjct: 229 TNLA--AGISPTPLSHAEVIEAGQAAGPRISALLADIA 264
>d1cb0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 273
Score = 186 bits (474), Expect = 3e-57
Identities = 64/267 (23%), Positives = 108/267 (40%), Gaps = 11/267 (4%)
Query: 146 PKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGR 205
KIGII G+GL I + Y P+ S L+ G I + + +
Sbjct: 2 VKIGIIGGTGLDDPE--ILEGRTEKYVDTPFGKPS------DALILGKIKNVDCVLLARH 53
Query: 206 FHYYEGYPLW-KCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264
+ P I +K G TH++ T A G L + + GDI+II I+
Sbjct: 54 GRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRP 113
Query: 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETV 324
+ G + G PM + + + R ++ A+ L + +G I GP F +
Sbjct: 114 QSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLR-CHSKGTMVTIEGPRFSSR 172
Query: 325 AELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQA 384
AE M R G D + M+TV EV+ A G+ + ++ T+ + + + V++
Sbjct: 173 AESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDC-WKEHEEAVSVDRVLKT 231
Query: 385 GKLRGPMIKSMVTRIVSYIGEHQLNST 411
K KS++ + IG + + T
Sbjct: 232 LKENANKAKSLLLTTIPQIGSTEWSET 258
>d1v4na_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 266
Score = 164 bits (417), Expect = 8e-49
Identities = 64/266 (24%), Positives = 106/266 (39%), Gaps = 21/266 (7%)
Query: 145 RPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPI--MCM 202
+ IGII GSGL +T+ T PY S ++ G + G + +
Sbjct: 2 KASIGIIGGSGLYDP-QILTNVKEIKVYT-PYGEPS------DNIILGELEGRKVAFLPR 53
Query: 203 QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGF 262
GR H + + A +K +GV ++A +A G L DY+ GD ++ I++
Sbjct: 54 HGRGHRIPPHKINYRANI-WALKSLGVKWVIAVSAVGSLRLDYKPGDFVVPNQFIDMTKG 112
Query: 263 AGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE 322
D M + + LR+ LD A+DL + + +G Y I GP F
Sbjct: 113 RTYTFF-----DGPTVAHVSMADPFCEHLRSIILDSAKDLGI-TTHDKGTYICIEGPRFS 166
Query: 323 TVAELNML-RICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEV 381
T AE + + D +GM+ V EV A M + ++T+ D EEV
Sbjct: 167 TRAESIVWKEVFKADIIGMTLVPEVNLACEAEMCYSVIGMVTD---YDVFADIPVTAEEV 223
Query: 382 IQAGKLRGPMIKSMVTRIVSYIGEHQ 407
+ +K ++ ++ + E
Sbjct: 224 TKVMAENTAKVKKLLYEVIRRLPEKP 249
>d1odka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermus
thermophilus [TaxId: 274]}
Length = 234
Score = 67.6 bits (164), Expect = 1e-13
Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 19/196 (9%)
Query: 192 GLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIM 251
GL G+P+ A+ + + +G L+ AG + D G+++
Sbjct: 50 GLYKGVPVSVQTTGMGTP------SAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELI 103
Query: 252 IIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEG 311
+ + + L G A R + + G
Sbjct: 104 VAQGAVPLDGTTR-------------QYLEGRPYAPVPDPEVFRALWRRAEALGYPHRVG 150
Query: 312 VYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYD 371
+ + T E GV A M + G+ A ++N+
Sbjct: 151 LVASEDAFYATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSNRIGDPEL 210
Query: 372 DHAEANHEEVIQAGKL 387
E E V + ++
Sbjct: 211 APPEVLQEGVRRMVEV 226
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 62.7 bits (152), Expect = 4e-12
Identities = 26/37 (70%), Positives = 28/37 (75%)
Query: 92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTY 128
KPH N+GTIGHVDHGKTTLTAAITK L EG +
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKK 37
Score = 52.7 bits (126), Expect = 1e-08
Identities = 30/47 (63%), Positives = 39/47 (82%)
Query: 8 AADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIG 54
D+EM ELVE+E+RELLTE G+KG+E P + GSALCALE ++PE+G
Sbjct: 132 VQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELG 178
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 62.7 bits (151), Expect = 4e-12
Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 3/145 (2%)
Query: 88 YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPK 147
+ + +P NIG +GHVDHGKTTL AIT + + +I
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGY---AETNIGVC 58
Query: 148 IGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFH 207
T + + PGH+ + L +
Sbjct: 59 ESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVA 118
Query: 208 YYEGYPLWKCAMPIRVMKLVGVTHL 232
E +P + + ++GV +L
Sbjct: 119 ANEPFPQPQTREHFVALGIIGVKNL 143
Score = 31.5 bits (70), Expect = 0.14
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 6 IDAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE 50
+D E A ++++ + VP + SAL +
Sbjct: 150 VDVVSKEEALSQYRQIKQFTKGTW--AENVPIIPVSALHKINIDS 192
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 61.5 bits (149), Expect = 1e-11
Identities = 21/25 (84%), Positives = 23/25 (92%)
Query: 92 KPHCNIGTIGHVDHGKTTLTAAITK 116
KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAALTY 25
Score = 39.6 bits (92), Expect = 2e-04
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 8 AADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE 50
D E+ +LVEME+R+LL + + GDEVP ++GSAL ALE
Sbjct: 133 VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMH 175
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 62.0 bits (150), Expect = 1e-11
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 90 RDKPHCNIGTIGHVDHGKTTLTAAIT 115
++K H N+ IGHVD GK+T T +
Sbjct: 2 KEKSHINVVVIGHVDSGKSTTTGHLI 27
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 57.9 bits (139), Expect = 3e-10
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 7/97 (7%)
Query: 92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGII 151
KPH N+ IGHVDHGK+TL + G + T + + AK K +
Sbjct: 1 KPHLNLIVIGHVDHGKSTLVGRLLMDR--GFIDEKTVKEAEEAAK---KLGKESEKFAFL 55
Query: 152 CGSGLSTIADSITDRHIFPYDTIPYFPVSTV--PGHK 186
+T F + + + PGH+
Sbjct: 56 LDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHR 92
Score = 27.5 bits (60), Expect = 2.9
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 7 DAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSAL 43
D + + + ++ + + G+ ++V FV A
Sbjct: 156 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAP 192
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 57.3 bits (137), Expect = 3e-10
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSY 126
+ NIG +GHVDHGKTTLT A+T +
Sbjct: 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEEL 37
Score = 27.3 bits (59), Expect = 2.6
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 3 VYYIDAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSAL 43
I+ D E A +++E + + P + SAL
Sbjct: 139 QNKIELVDKEKALENYRQIKEFIEGTV--AENAPIIPISAL 177
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 55.6 bits (133), Expect = 2e-09
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 92 KPHCNIGTIGHVDHGKTTLTAAIT 115
K H NI IGHVD GK+TL I
Sbjct: 22 KEHVNIVFIGHVDAGKSTLGGNIL 45
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 51.6 bits (122), Expect = 2e-08
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 91 DKPHCNIGTIGHVDHGKTTLTAAITK 116
D + N+G GH+DHGKTTL+ +T+
Sbjct: 2 DFKNINLGIFGHIDHGKTTLSKVLTE 27
>d1vhwa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Vibrio
cholerae [TaxId: 666]}
Length = 237
Score = 50.6 bits (120), Expect = 9e-08
Identities = 28/197 (14%), Positives = 59/197 (29%), Gaps = 20/197 (10%)
Query: 192 GLINGIPIMCMQGRFHYYEGYPLWKCAMPI-RVMKLVGVTHLLATNAAGGLNPDYEVGDI 250
G G I M H C++ + ++K GV ++ + G +N +V D+
Sbjct: 50 GTYKGRRISVM---GHGMGIPS---CSIYVTELIKDYGVKKIIRVGSCGAVNEGIKVRDV 103
Query: 251 MIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKE 310
+I R + + ++ A + A+ + VK
Sbjct: 104 VIGMGACTDSKVN-----------RIRFKDHDFAAIADYKMVKAAEEAAKARGID--VKV 150
Query: 311 GVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDY 370
G + +++ G+ V M A G A +++ T
Sbjct: 151 GNLFSAELFYTPDPSMFDVMDKYGIVGVEMEAAGIYGVAAEYGAKALAICTVSDHIKTGE 210
Query: 371 DDHAEANHEEVIQAGKL 387
+E + ++
Sbjct: 211 QTTSEERQNTFNEMIEI 227
>d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides
thetaiotaomicron [TaxId: 818]}
Length = 246
Score = 50.1 bits (119), Expect = 1e-07
Identities = 23/170 (13%), Positives = 50/170 (29%), Gaps = 15/170 (8%)
Query: 217 CAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRF 276
A + ++ + ++ GGL + +GD ++ I G + D
Sbjct: 72 AATIMDLLWAIHPKAVIFLGKCGGLKLENALGDYLLPIAAIRGE---------GTSNDYL 122
Query: 277 GPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNM-LRICGV 335
P + + + A ++ G +E + LR
Sbjct: 123 PEEVPSL---PSFSVLRAISSAIQNKGKDYWT--GTVYTTNRRVWEYDEKFKDYLRSTHA 177
Query: 336 DAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAG 385
V M T + + + A LI+++ + E + + V
Sbjct: 178 SGVDMETATLMTVGFANKIPMGALLLISDRPMFPEGVKTEESDQLVTDNF 227
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 49.1 bits (116), Expect = 2e-07
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 92 KPHCNIGTIGHVDHGKTTLTAAITK 116
K T G+VD GK+TL +
Sbjct: 7 KEMLRFLTCGNVDDGKSTLIGRLLH 31
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 47.8 bits (113), Expect = 8e-07
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 96 NIGTIGHVDHGKTTLTAAITK 116
NIG H+D GKTT T I
Sbjct: 8 NIGIAAHIDAGKTTTTERILY 28
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 47.8 bits (113), Expect = 1e-06
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 96 NIGTIGHVDHGKTTLTAAITK 116
N+ I HVDHGK+TLT ++ +
Sbjct: 19 NMSVIAHVDHGKSTLTDSLVQ 39
>d1jysa_ c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhomocysteine
nucleosidase {Escherichia coli [TaxId: 562]}
Length = 230
Score = 46.8 bits (110), Expect = 1e-06
Identities = 45/260 (17%), Positives = 84/260 (32%), Gaps = 39/260 (15%)
Query: 147 KIGIICGSG--LSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQG 204
KIGII ++ + D I +R + G +NG + ++
Sbjct: 2 KIGIIGAMEEEVTLLRDKIENRQTISLGGCEIY-------------TGQLNGTEVALLKS 48
Query: 205 RFHYYEGYPLWKCAMPIRVMKLV---GVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMG 261
K A + L+ ++ T +AGGL P +VGDI++ +
Sbjct: 49 GIG--------KVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDA 100
Query: 262 FAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF 321
F + +L AA +LN++ V+ + S N
Sbjct: 101 DVTAFGYEYGQLPGCPAGFKA-----DDKLIAAAEACIAELNLN-AVRGLIVSGDAFING 154
Query: 322 ETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDY-DDHAEANHEE 380
AV M H+ + + ++D D + + +E
Sbjct: 155 SVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVV-----RAISDVADQQSHLSFDE 209
Query: 381 VIQ-AGKLRGPMIKSMVTRI 399
+ A K M++S+V ++
Sbjct: 210 FLAVAAKQSSLMVESLVQKL 229
>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId:
562]}
Length = 477
Score = 45.7 bits (108), Expect = 6e-06
Identities = 27/211 (12%), Positives = 56/211 (26%), Gaps = 22/211 (10%)
Query: 175 PYFPVSTVPGHKGQLV---FGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTH 231
P +S + K Q+ +G I + G + ++
Sbjct: 239 PEEAISDLAWKKHQMPAWHLITADGQGITLVNIGV----GPS--NAKTICDHLAVLRPDV 292
Query: 232 LLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQL 291
L GGL +GD ++ ++ + D P + +A
Sbjct: 293 WLMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAV----LPPDIPIPSIAEVQRALYDAT 348
Query: 292 RAATLDIARDLNMSSIVKEGVYSVIGGPNFET--VAELNMLRICGVDAVGMSTVHEVITA 349
+ + ++ ++ G N+E A + A+ M +
Sbjct: 349 KLVSGRPGEEVKQR--LRTGTVVTTDDRNWELRYSASALRFNLSRAVAIDMESATIAAQG 406
Query: 350 HHCGMTVTAFSLITNKCVTDYDDHAEANHEE 380
+ + CV+D H E
Sbjct: 407 YRFRVPYGTL-----LCVSDKPLHGEIKLPG 432
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 44.1 bits (103), Expect = 1e-05
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 96 NIGTIGHVDHGKTTLTAAITK 116
+ +GH GKTTLT A+
Sbjct: 4 TVALVGHAGSGKTTLTEALLY 24
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 42.0 bits (97), Expect = 6e-05
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 97 IGTIGHVDHGKTTLTAAITK 116
+ +GHVDHGKTTL I
Sbjct: 8 VSVLGHVDHGKTTLLDHIRG 27
>d2ac7a1 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase, PNP
{Bacillus anthracis [TaxId: 1392]}
Length = 231
Score = 39.4 bits (91), Expect = 4e-04
Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 17/168 (10%)
Query: 222 RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFP 281
+++ GV +L+ G + D +V D++I FP
Sbjct: 74 ELIQSYGVKNLIRVGTCGAIQKDVKVRDVIIAMTACTDSNMNRL-------------TFP 120
Query: 282 PMNKAY--NKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVG 339
+ A N L D + + V+ G E++ + L GV AV
Sbjct: 121 GFDFAPAANFDLLKKAYDAGTEKGLH--VRVGNVLTADVFYRESMDMVKKLGDYGVLAVE 178
Query: 340 MSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKL 387
M T A G+ + +++ T + +E + ++
Sbjct: 179 METTALYTLAAKYGVNALSVLTVSDHIFTGEETTSEERQTTFNEMIEI 226
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 34.3 bits (77), Expect = 0.015
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 96 NIGTIGHVDHGKTTLTAAITK 116
+ +G + GK+TL AI
Sbjct: 10 KVAIVGRPNVGKSTLFNAILN 30
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 33.8 bits (76), Expect = 0.028
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 97 IGTIGHVDHGKTTLTAAITK 116
+ +G GKTTLT +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGR 22
>d1rxya_ c.56.2.1 (A:) Uridine phosphorylase {Escherichia coli
[TaxId: 562]}
Length = 250
Score = 33.6 bits (76), Expect = 0.032
Identities = 25/200 (12%), Positives = 57/200 (28%), Gaps = 14/200 (7%)
Query: 192 GLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIM 251
++G P++ G ++ + + +G+ L G + P VGD++
Sbjct: 52 AELDGKPVIVCST------GIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHINVGDVL 105
Query: 252 IIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSI---- 307
+ + L L + A + ++ + SS
Sbjct: 106 VTTASVRLD----GASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSDTFYP 161
Query: 308 VKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV 367
+E + G + + GV M + + G+ + +
Sbjct: 162 GQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRT 221
Query: 368 TDYDDHAEANHEEVIQAGKL 387
+AE + A K+
Sbjct: 222 QQEIPNAETMKQTESHAVKI 241
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 31.6 bits (70), Expect = 0.11
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 91 DKPHC-NIGTIGHVDHGKTTLTAAITK 116
DK +C I +G + GK+TL +
Sbjct: 1 DKSYCGFIAIVGRPNVGKSTLLNKLLG 27
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 30.5 bits (67), Expect = 0.24
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 91 DKPHCN-IGTIGHVDHGKTTLTAAITK 116
+K + + +G + GK+TL +
Sbjct: 1 EKTYSGFVAIVGKPNVGKSTLLNNLLG 27
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 30.4 bits (67), Expect = 0.31
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 100 IGHVDHGKTTLTAAITKG 117
G + GKT+L +T
Sbjct: 9 AGPQNSGKTSLLTLLTTD 26
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 30.0 bits (66), Expect = 0.38
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 96 NIGTIGHVDHGKTTLTAAITKG 117
+ +G D GKT L + G
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTG 23
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 28.2 bits (61), Expect = 1.4
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 97 IGTIGHVDHGKTTLTAAITK 116
+ +G + GK+TL + K
Sbjct: 3 VLIVGRPNVGKSTLFNKLVK 22
>d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 261
Score = 28.0 bits (61), Expect = 2.1
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 11/65 (16%)
Query: 274 DRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRIC 333
D + + +Y L + +AR + + + E + E +L
Sbjct: 174 DLQALKVSQPSPSYEHVLYS-ISLLARKIGAALLY-EDI---------EANFQLQYAWRN 222
Query: 334 GVDAV 338
G
Sbjct: 223 GGRYF 227
>d2df7a1 b.121.4.9 (A:11-429) Birnavirus VP2 {Infectious bursal
disease virus [TaxId: 10995]}
Length = 419
Score = 27.4 bits (61), Expect = 3.6
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 154 SGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVF 191
+G ++I D ++H +T Y G G +VF
Sbjct: 13 TGPASIPDDTLEKHTLRSETSTYNLTVGDTG-SGLIVF 49
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 26.9 bits (58), Expect = 3.8
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 96 NIGTIGHVDHGKTTLTAAITK 116
++G +G+ + GK++L AA+T+
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTR 23
>d1w9pa1 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergillus
fumigatus [TaxId: 5085]}
Length = 333
Score = 27.1 bits (59), Expect = 3.9
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 6/101 (5%)
Query: 194 INGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG---LNPDYEVGDI 250
I+ Q + + A+ G H L T A+ + D+
Sbjct: 136 IDWEYPENDQQANDFVLLLKEVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLHLKDM 195
Query: 251 MIIKDHINLMGF---AGNNPLLGVNEDRFGPRFPPMNKAYN 288
D NLM + + L G + + P++ +N
Sbjct: 196 DQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSNPLSTPFN 236
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 26.6 bits (57), Expect = 4.1
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 100 IGHVDHGKTTLTAAITKG 117
+G GKTT I G
Sbjct: 8 VGLQYSGKTTFVNVIASG 25
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 26.3 bits (56), Expect = 5.3
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 96 NIGTIGHVDHGKTTLTAAITK 116
+ G + GK++ +T
Sbjct: 18 EVAFAGRSNAGKSSALNTLTN 38
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 25.7 bits (55), Expect = 8.3
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 96 NIGTIGHVDHGKTTLTAAITK 116
++G +G GK+TL + ++
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSS 23
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 25.7 bits (55), Expect = 9.1
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 96 NIGTIGHVDHGKTTLTAAITK 116
+ +G + GK+TL +
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLN 22
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId:
562]}
Length = 219
Score = 25.7 bits (56), Expect = 9.4
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 65 EINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLG 124
+N L+ + L+ R G +Q+Y P + G + T + + +
Sbjct: 121 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETF-TNVT 179
Query: 125 SYTYELIQSIAK---FLLDSISIR 145
+ YE++ + FL +SIR
Sbjct: 180 EFEYEILAKRLRELSFLDSGVSIR 203
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.418
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,559,076
Number of extensions: 75129
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 60
Length of query: 412
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 324
Effective length of database: 1,199,356
Effective search space: 388591344
Effective search space used: 388591344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)