Query psy9645
Match_columns 98
No_of_seqs 102 out of 752
Neff 5.2
Searched_HMMs 46136
Date Sat Aug 17 00:58:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1241 MCM2 Predicted ATPase 100.0 5.4E-34 1.2E-38 242.0 9.1 92 7-98 285-378 (682)
2 KOG0480|consensus 100.0 2.4E-33 5.1E-38 237.0 8.7 91 8-98 345-437 (764)
3 KOG0477|consensus 100.0 5.2E-33 1.1E-37 235.2 8.8 91 8-98 449-541 (854)
4 KOG0482|consensus 100.0 3.4E-31 7.5E-36 220.9 6.8 91 8-98 342-434 (721)
5 PF00493 MCM: MCM2/3/5 family 100.0 1.6E-31 3.5E-36 209.3 4.0 91 8-98 24-116 (331)
6 KOG0481|consensus 100.0 1.7E-30 3.8E-35 216.9 8.5 91 8-98 331-423 (729)
7 KOG0478|consensus 100.0 1.2E-30 2.6E-35 221.7 7.2 91 8-98 428-521 (804)
8 KOG0479|consensus 99.9 3.7E-28 8E-33 205.0 6.7 91 8-98 301-393 (818)
9 PTZ00111 DNA replication licen 99.9 4.9E-23 1.1E-27 179.4 5.4 92 7-98 449-552 (915)
10 smart00350 MCM minichromosome 99.9 9.9E-22 2.1E-26 161.4 7.7 91 8-98 203-295 (509)
11 PF01078 Mg_chelatase: Magnesi 98.0 7.5E-06 1.6E-10 61.9 3.8 43 9-65 4-48 (206)
12 PF07728 AAA_5: AAA domain (dy 97.8 1.6E-05 3.4E-10 53.9 3.2 44 41-84 1-46 (139)
13 smart00382 AAA ATPases associa 97.7 4.6E-05 1E-09 48.3 3.7 33 40-72 3-39 (148)
14 PRK13407 bchI magnesium chelat 97.7 7.8E-05 1.7E-09 59.5 5.1 44 9-65 9-55 (334)
15 TIGR02030 BchI-ChlI magnesium 97.6 9E-05 1.9E-09 59.1 4.6 44 10-65 6-51 (337)
16 TIGR02881 spore_V_K stage V sp 97.5 6.4E-05 1.4E-09 56.7 2.7 54 10-63 8-66 (261)
17 PF00004 AAA: ATPase family as 97.5 0.00015 3.2E-09 47.5 3.8 24 42-65 1-24 (132)
18 COG1116 TauB ABC-type nitrate/ 97.4 0.00034 7.4E-09 54.4 5.3 50 37-86 27-79 (248)
19 cd00009 AAA The AAA+ (ATPases 97.4 0.00026 5.7E-09 45.5 3.7 24 40-63 20-43 (151)
20 CHL00181 cbbX CbbX; Provisiona 97.3 0.00019 4.1E-09 55.7 3.4 53 10-63 25-83 (287)
21 CHL00081 chlI Mg-protoporyphyr 97.3 0.00028 6.1E-09 56.8 4.1 48 10-67 19-66 (350)
22 TIGR02031 BchD-ChlD magnesium 97.3 0.00035 7.5E-09 59.2 4.4 74 14-97 1-78 (589)
23 COG1066 Sms Predicted ATP-depe 97.2 0.0004 8.6E-09 57.9 4.3 40 34-74 89-131 (456)
24 PF08477 Miro: Miro-like prote 97.2 0.00034 7.4E-09 45.4 3.0 24 41-64 1-24 (119)
25 COG1134 TagH ABC-type polysacc 97.1 0.0002 4.3E-09 55.7 1.7 54 35-90 50-106 (249)
26 TIGR00231 small_GTP small GTP- 97.1 0.00041 8.9E-09 44.9 2.8 24 39-62 1-24 (161)
27 PF13671 AAA_33: AAA domain; P 97.1 0.0007 1.5E-08 45.4 3.7 28 42-70 2-29 (143)
28 COG4619 ABC-type uncharacteriz 97.1 0.00081 1.7E-08 51.1 4.3 41 36-77 27-70 (223)
29 PRK10787 DNA-binding ATP-depen 97.1 0.001 2.3E-08 58.2 5.5 54 10-68 324-378 (784)
30 TIGR00635 ruvB Holliday juncti 97.0 0.0014 3E-08 49.7 5.4 53 10-68 6-59 (305)
31 TIGR00368 Mg chelatase-related 97.0 0.00064 1.4E-08 56.9 3.8 26 40-65 212-237 (499)
32 COG1120 FepC ABC-type cobalami 97.0 0.00065 1.4E-08 52.9 3.4 35 40-74 29-66 (258)
33 PF00005 ABC_tran: ABC transpo 97.0 0.0004 8.6E-09 46.5 1.7 35 40-74 12-49 (137)
34 COG2255 RuvB Holliday junction 97.0 0.00086 1.9E-08 53.9 3.7 54 11-71 29-84 (332)
35 PF05496 RuvB_N: Holliday junc 96.9 0.0013 2.8E-08 50.8 4.4 54 10-70 26-81 (233)
36 PRK10078 ribose 1,5-bisphospho 96.9 0.0012 2.5E-08 47.4 3.9 35 41-75 4-38 (186)
37 cd04138 H_N_K_Ras_like H-Ras/N 96.9 0.00096 2.1E-08 44.5 3.1 22 40-61 2-23 (162)
38 PF05729 NACHT: NACHT domain 96.9 0.0008 1.7E-08 45.3 2.6 20 42-61 3-22 (166)
39 PF07726 AAA_3: ATPase family 96.9 0.0018 3.9E-08 46.1 4.5 57 41-97 1-59 (131)
40 cd01120 RecA-like_NTPases RecA 96.9 0.0011 2.4E-08 44.1 3.2 32 41-72 1-36 (165)
41 cd01878 HflX HflX subfamily. 96.9 0.00084 1.8E-08 47.8 2.7 26 37-62 39-64 (204)
42 PF13207 AAA_17: AAA domain; P 96.9 0.00078 1.7E-08 44.1 2.4 22 42-63 2-23 (121)
43 COG3839 MalK ABC-type sugar tr 96.9 0.0011 2.3E-08 53.4 3.6 37 40-76 30-69 (338)
44 cd04119 RJL RJL (RabJ-Like) su 96.8 0.00096 2.1E-08 44.8 2.7 23 40-62 1-23 (168)
45 cd04177 RSR1 RSR1 subgroup. R 96.8 0.0012 2.5E-08 45.5 3.1 22 39-60 1-22 (168)
46 TIGR02442 Cob-chelat-sub cobal 96.8 0.0017 3.8E-08 55.3 4.7 46 9-64 5-50 (633)
47 PF01926 MMR_HSR1: 50S ribosom 96.8 0.0009 2E-08 43.8 2.4 21 41-61 1-21 (116)
48 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.0013 2.8E-08 47.6 3.4 33 40-72 31-66 (218)
49 TIGR02315 ABC_phnC phosphonate 96.8 0.0013 2.9E-08 48.3 3.4 34 40-73 29-65 (243)
50 PRK13540 cytochrome c biogenes 96.8 0.0015 3.3E-08 47.1 3.7 34 40-73 28-64 (200)
51 cd03266 ABC_NatA_sodium_export 96.8 0.0013 2.9E-08 47.6 3.4 33 40-72 32-67 (218)
52 COG0606 Predicted ATPase with 96.8 0.00098 2.1E-08 56.1 3.0 42 10-65 181-224 (490)
53 TIGR02880 cbbX_cfxQ probable R 96.8 0.00088 1.9E-08 51.7 2.5 55 9-63 23-82 (284)
54 cd04136 Rap_like Rap-like subf 96.8 0.0013 2.8E-08 44.3 3.1 21 40-60 2-22 (163)
55 cd01892 Miro2 Miro2 subfamily. 96.8 0.0011 2.4E-08 46.3 2.8 25 37-61 2-26 (169)
56 cd04124 RabL2 RabL2 subfamily. 96.8 0.0011 2.4E-08 45.6 2.7 21 40-60 1-21 (161)
57 cd00154 Rab Rab family. Rab G 96.8 0.0012 2.6E-08 43.3 2.7 24 40-63 1-24 (159)
58 cd03264 ABC_drug_resistance_li 96.8 0.0014 3.1E-08 47.2 3.3 32 41-72 27-61 (211)
59 PRK14532 adenylate kinase; Pro 96.8 0.0019 4.2E-08 45.8 3.9 30 41-70 2-31 (188)
60 TIGR02323 CP_lyasePhnK phospho 96.8 0.0018 3.9E-08 48.1 3.8 33 40-72 30-65 (253)
61 TIGR03420 DnaA_homol_Hda DnaA 96.8 0.0014 3E-08 47.3 3.2 33 40-72 39-75 (226)
62 TIGR01166 cbiO cobalt transpor 96.8 0.0016 3.4E-08 46.4 3.4 34 40-73 19-55 (190)
63 cd04137 RheB Rheb (Ras Homolog 96.7 0.0014 3.1E-08 45.3 3.0 23 40-62 2-24 (180)
64 cd03269 ABC_putative_ATPase Th 96.7 0.0018 3.9E-08 46.7 3.6 33 40-72 27-62 (210)
65 cd03258 ABC_MetN_methionine_tr 96.7 0.0016 3.5E-08 47.6 3.4 35 38-72 30-67 (233)
66 TIGR03608 L_ocin_972_ABC putat 96.7 0.0017 3.8E-08 46.5 3.5 36 37-73 23-61 (206)
67 PRK06893 DNA replication initi 96.7 0.0018 3.8E-08 48.2 3.6 33 40-72 40-76 (229)
68 PF03266 NTPase_1: NTPase; In 96.7 0.0014 3E-08 47.3 3.0 23 41-63 1-23 (168)
69 cd01862 Rab7 Rab7 subfamily. 96.7 0.0012 2.7E-08 44.8 2.6 22 40-61 1-22 (172)
70 PRK10584 putative ABC transpor 96.7 0.0018 3.8E-08 47.3 3.5 34 40-73 37-73 (228)
71 cd01860 Rab5_related Rab5-rela 96.7 0.0015 3.3E-08 44.1 3.0 24 39-62 1-24 (163)
72 cd03257 ABC_NikE_OppD_transpor 96.7 0.0017 3.7E-08 47.1 3.4 34 40-73 32-68 (228)
73 cd00157 Rho Rho (Ras homology) 96.7 0.0014 3E-08 44.5 2.7 23 40-62 1-23 (171)
74 cd03254 ABCC_Glucan_exporter_l 96.7 0.0019 4.1E-08 47.1 3.5 35 37-72 28-65 (229)
75 cd04160 Arfrp1 Arfrp1 subfamil 96.7 0.0012 2.7E-08 44.8 2.4 22 41-62 1-22 (167)
76 cd04155 Arl3 Arl3 subfamily. 96.7 0.0013 2.8E-08 45.0 2.6 24 39-62 14-37 (173)
77 cd03263 ABC_subfamily_A The AB 96.7 0.0019 4.2E-08 46.8 3.5 34 40-73 29-65 (220)
78 TIGR00960 3a0501s02 Type II (G 96.7 0.0018 4E-08 46.9 3.4 32 41-72 31-65 (216)
79 cd03218 ABC_YhbG The ABC trans 96.7 0.0018 4E-08 47.2 3.4 34 40-73 27-63 (232)
80 cd03219 ABC_Mj1267_LivG_branch 96.7 0.0017 3.6E-08 47.6 3.2 34 40-73 27-63 (236)
81 cd03261 ABC_Org_Solvent_Resist 96.7 0.0019 4E-08 47.5 3.4 33 40-72 27-62 (235)
82 PRK13541 cytochrome c biogenes 96.7 0.0024 5.2E-08 45.8 3.8 33 40-72 27-62 (195)
83 PF13191 AAA_16: AAA ATPase do 96.7 0.0014 2.9E-08 45.3 2.4 24 40-63 25-48 (185)
84 cd03268 ABC_BcrA_bacitracin_re 96.7 0.0022 4.7E-08 46.2 3.6 34 40-73 27-63 (208)
85 cd03253 ABCC_ATM1_transporter 96.7 0.0021 4.5E-08 47.1 3.5 34 40-73 28-64 (236)
86 smart00175 RAB Rab subfamily o 96.7 0.0015 3.3E-08 43.9 2.6 22 40-61 1-22 (164)
87 TIGR02211 LolD_lipo_ex lipopro 96.6 0.0021 4.6E-08 46.6 3.5 33 41-73 33-68 (221)
88 cd03226 ABC_cobalt_CbiO_domain 96.6 0.0021 4.6E-08 46.3 3.5 34 39-72 26-62 (205)
89 PRK14530 adenylate kinase; Pro 96.6 0.0025 5.4E-08 46.6 3.8 26 41-66 5-30 (215)
90 cd03301 ABC_MalK_N The N-termi 96.6 0.0017 3.6E-08 46.9 2.9 35 37-72 25-62 (213)
91 cd04101 RabL4 RabL4 (Rab-like4 96.6 0.0016 3.4E-08 44.2 2.6 22 40-61 1-22 (164)
92 cd03256 ABC_PhnC_transporter A 96.6 0.0021 4.6E-08 47.1 3.5 34 40-73 28-64 (241)
93 cd01867 Rab8_Rab10_Rab13_like 96.6 0.0019 4.1E-08 44.4 3.0 24 39-62 3-26 (167)
94 PRK11629 lolD lipoprotein tran 96.6 0.0022 4.8E-08 47.1 3.5 34 40-73 36-72 (233)
95 cd03246 ABCC_Protease_Secretio 96.6 0.0026 5.7E-08 44.9 3.7 32 41-72 30-64 (173)
96 TIGR01313 therm_gnt_kin carboh 96.6 0.0023 5E-08 44.3 3.3 31 42-73 1-31 (163)
97 cd03248 ABCC_TAP TAP, the Tran 96.6 0.0026 5.7E-08 46.4 3.7 33 40-72 41-76 (226)
98 cd03259 ABC_Carb_Solutes_like 96.6 0.0024 5.1E-08 46.2 3.5 34 40-73 27-63 (213)
99 cd01866 Rab2 Rab2 subfamily. 96.6 0.002 4.3E-08 44.5 2.9 24 39-62 4-27 (168)
100 cd03214 ABC_Iron-Siderophores_ 96.6 0.0026 5.6E-08 45.2 3.6 34 39-72 25-61 (180)
101 cd03252 ABCC_Hemolysin The ABC 96.6 0.0024 5.2E-08 46.9 3.5 33 40-72 29-64 (237)
102 PTZ00132 GTP-binding nuclear p 96.6 0.0017 3.8E-08 46.8 2.7 28 37-64 7-35 (215)
103 COG3854 SpoIIIAA ncharacterize 96.6 0.0018 3.8E-08 51.3 2.9 27 37-63 135-161 (308)
104 cd01898 Obg Obg subfamily. Th 96.6 0.0015 3.2E-08 44.4 2.2 22 41-62 2-23 (170)
105 COG1126 GlnQ ABC-type polar am 96.6 0.0021 4.6E-08 49.8 3.3 36 36-72 26-64 (240)
106 cd04157 Arl6 Arl6 subfamily. 96.6 0.0013 2.9E-08 44.2 1.9 22 41-62 1-22 (162)
107 PRK11248 tauB taurine transpor 96.6 0.0049 1.1E-07 46.4 5.2 34 40-73 28-64 (255)
108 cd03293 ABC_NrtD_SsuB_transpor 96.6 0.0025 5.3E-08 46.4 3.5 34 40-73 31-67 (220)
109 PRK05342 clpX ATP-dependent pr 96.6 0.0036 7.9E-08 51.2 4.8 59 9-67 72-136 (412)
110 cd03262 ABC_HisP_GlnQ_permease 96.6 0.0019 4.2E-08 46.5 2.9 32 41-72 28-62 (213)
111 PF13401 AAA_22: AAA domain; P 96.6 0.0024 5.3E-08 42.0 3.1 25 38-62 3-27 (131)
112 cd03292 ABC_FtsE_transporter F 96.6 0.002 4.2E-08 46.5 2.9 33 40-72 28-63 (214)
113 cd03235 ABC_Metallic_Cations A 96.6 0.0024 5.2E-08 46.1 3.3 33 40-72 26-61 (213)
114 cd03251 ABCC_MsbA MsbA is an e 96.6 0.0025 5.5E-08 46.6 3.5 33 40-72 29-64 (234)
115 cd03260 ABC_PstB_phosphate_tra 96.6 0.0029 6.3E-08 46.1 3.8 33 40-72 27-67 (227)
116 cd01868 Rab11_like Rab11-like. 96.6 0.0021 4.6E-08 43.7 2.8 21 40-60 4-24 (165)
117 PRK10771 thiQ thiamine transpo 96.6 0.0024 5.3E-08 46.9 3.4 34 40-73 26-62 (232)
118 TIGR02322 phosphon_PhnN phosph 96.6 0.0021 4.6E-08 45.1 2.9 24 41-64 3-26 (179)
119 PRK13947 shikimate kinase; Pro 96.6 0.0028 6.2E-08 44.0 3.5 31 41-71 3-33 (171)
120 PRK13648 cbiO cobalt transport 96.6 0.0027 5.9E-08 47.9 3.7 35 40-74 36-73 (269)
121 cd03298 ABC_ThiQ_thiamine_tran 96.6 0.0027 5.9E-08 45.8 3.6 33 40-72 25-60 (211)
122 cd04113 Rab4 Rab4 subfamily. 96.6 0.002 4.4E-08 43.6 2.7 23 40-62 1-23 (161)
123 cd01130 VirB11-like_ATPase Typ 96.6 0.0024 5.1E-08 45.9 3.2 27 39-65 25-51 (186)
124 cd03290 ABCC_SUR1_N The SUR do 96.6 0.003 6.4E-08 45.9 3.7 37 36-72 24-63 (218)
125 cd03296 ABC_CysA_sulfate_impor 96.5 0.0026 5.7E-08 46.9 3.5 34 40-73 29-65 (239)
126 cd04106 Rab23_lke Rab23-like s 96.5 0.0019 4.2E-08 43.5 2.6 22 40-61 1-22 (162)
127 PRK10908 cell division protein 96.5 0.0027 5.8E-08 46.3 3.5 33 40-72 29-64 (222)
128 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.004 8.6E-08 48.5 4.6 50 36-86 28-82 (254)
129 PRK11300 livG leucine/isoleuci 96.5 0.0025 5.3E-08 47.3 3.3 34 40-73 32-68 (255)
130 PRK13649 cbiO cobalt transport 96.5 0.0025 5.4E-08 48.3 3.4 36 37-73 32-70 (280)
131 PRK05201 hslU ATP-dependent pr 96.5 0.003 6.5E-08 52.7 4.1 59 7-65 14-76 (443)
132 PF13238 AAA_18: AAA domain; P 96.5 0.0019 4.1E-08 42.0 2.4 21 42-62 1-21 (129)
133 PRK08118 topology modulation p 96.5 0.0027 5.8E-08 45.4 3.3 25 41-65 3-27 (167)
134 cd04164 trmE TrmE (MnmE, ThdF, 96.5 0.0021 4.5E-08 42.5 2.6 23 40-62 2-24 (157)
135 PRK00131 aroK shikimate kinase 96.5 0.0031 6.8E-08 43.2 3.6 29 40-68 5-33 (175)
136 cd04175 Rap1 Rap1 subgroup. T 96.5 0.0024 5.2E-08 43.5 3.0 21 40-60 2-22 (164)
137 cd04176 Rap2 Rap2 subgroup. T 96.5 0.0025 5.3E-08 43.3 3.0 25 39-63 1-26 (163)
138 cd04145 M_R_Ras_like M-Ras/R-R 96.5 0.0026 5.6E-08 42.8 3.1 22 40-61 3-24 (164)
139 TIGR01189 ccmA heme ABC export 96.5 0.0029 6.3E-08 45.4 3.5 34 39-72 26-62 (198)
140 PRK11831 putative ABC transpor 96.5 0.0026 5.7E-08 48.1 3.4 33 40-72 34-69 (269)
141 cd04140 ARHI_like ARHI subfami 96.5 0.0026 5.6E-08 43.6 3.1 22 40-61 2-23 (165)
142 cd01876 YihA_EngB The YihA (En 96.5 0.0017 3.6E-08 43.1 2.0 19 42-60 2-20 (170)
143 PRK14273 phosphate ABC transpo 96.5 0.0029 6.3E-08 47.1 3.5 35 39-73 33-75 (254)
144 TIGR01277 thiQ thiamine ABC tr 96.5 0.0029 6.4E-08 45.9 3.5 37 36-72 21-60 (213)
145 cd03231 ABC_CcmA_heme_exporter 96.5 0.003 6.5E-08 45.6 3.5 33 40-72 27-62 (201)
146 TIGR00390 hslU ATP-dependent p 96.5 0.0038 8.3E-08 52.0 4.5 57 8-65 12-73 (441)
147 cd00464 SK Shikimate kinase (S 96.5 0.0027 5.9E-08 43.0 3.1 27 41-67 1-27 (154)
148 cd03216 ABC_Carb_Monos_I This 96.5 0.0023 5E-08 45.1 2.8 33 40-72 27-62 (163)
149 PRK11124 artP arginine transpo 96.5 0.003 6.4E-08 46.6 3.5 33 40-72 29-64 (242)
150 PRK10895 lipopolysaccharide AB 96.5 0.003 6.5E-08 46.6 3.5 33 40-72 30-65 (241)
151 cd02019 NK Nucleoside/nucleoti 96.5 0.0056 1.2E-07 37.7 4.2 22 42-63 2-23 (69)
152 TIGR02528 EutP ethanolamine ut 96.5 0.002 4.3E-08 43.0 2.3 22 41-62 2-23 (142)
153 TIGR02770 nickel_nikD nickel i 96.5 0.0029 6.3E-08 46.5 3.4 34 40-73 13-53 (230)
154 cd01861 Rab6 Rab6 subfamily. 96.5 0.0024 5.2E-08 43.0 2.7 21 41-61 2-22 (161)
155 TIGR02640 gas_vesic_GvpN gas v 96.5 0.0031 6.7E-08 47.9 3.6 34 39-72 21-55 (262)
156 cd03245 ABCC_bacteriocin_expor 96.5 0.003 6.6E-08 45.7 3.4 33 40-72 31-66 (220)
157 cd03295 ABC_OpuCA_Osmoprotecti 96.5 0.0031 6.7E-08 46.6 3.5 36 37-73 26-64 (242)
158 cd03265 ABC_DrrA DrrA is the A 96.5 0.0024 5.2E-08 46.5 2.9 33 40-72 27-62 (220)
159 PRK15112 antimicrobial peptide 96.5 0.003 6.5E-08 47.7 3.5 36 38-73 38-76 (267)
160 cd03229 ABC_Class3 This class 96.5 0.0033 7.1E-08 44.6 3.5 34 40-73 27-63 (178)
161 TIGR03410 urea_trans_UrtE urea 96.5 0.0023 4.9E-08 46.8 2.7 34 39-72 26-62 (230)
162 PRK13638 cbiO cobalt transport 96.5 0.0028 6.1E-08 47.9 3.3 34 40-73 28-64 (271)
163 cd04159 Arl10_like Arl10-like 96.5 0.0019 4.1E-08 42.4 2.1 21 42-62 2-22 (159)
164 PF13555 AAA_29: P-loop contai 96.5 0.003 6.5E-08 39.5 2.8 23 41-63 25-47 (62)
165 PRK13538 cytochrome c biogenes 96.5 0.0032 7E-08 45.5 3.5 33 40-72 28-63 (204)
166 PRK09493 glnQ glutamine ABC tr 96.5 0.0032 6.9E-08 46.4 3.5 33 41-73 29-64 (240)
167 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.5 0.0032 7E-08 46.2 3.5 33 40-72 30-65 (238)
168 cd03224 ABC_TM1139_LivF_branch 96.5 0.0028 6E-08 45.9 3.1 37 36-72 23-62 (222)
169 TIGR03740 galliderm_ABC gallid 96.5 0.0033 7.3E-08 45.8 3.5 33 40-72 27-62 (223)
170 PRK03839 putative kinase; Prov 96.5 0.0036 7.9E-08 44.2 3.6 31 41-71 2-32 (180)
171 PRK13531 regulatory ATPase Rav 96.5 0.0038 8.2E-08 52.7 4.2 25 41-65 41-65 (498)
172 cd03297 ABC_ModC_molybdenum_tr 96.5 0.0033 7.1E-08 45.6 3.4 37 35-72 20-59 (214)
173 TIGR03864 PQQ_ABC_ATP ABC tran 96.5 0.0034 7.4E-08 46.2 3.6 33 40-72 28-63 (236)
174 PRK13645 cbiO cobalt transport 96.5 0.0032 7E-08 48.0 3.5 32 41-72 39-73 (289)
175 cd01124 KaiC KaiC is a circadi 96.4 0.0039 8.5E-08 43.5 3.7 32 42-73 2-37 (187)
176 PF13245 AAA_19: Part of AAA d 96.4 0.0039 8.5E-08 39.7 3.3 31 41-71 12-49 (76)
177 TIGR02673 FtsE cell division A 96.4 0.0026 5.7E-08 45.9 2.8 33 40-72 29-64 (214)
178 PHA02530 pseT polynucleotide k 96.4 0.0039 8.5E-08 47.2 3.9 31 41-71 4-34 (300)
179 cd01895 EngA2 EngA2 subfamily. 96.4 0.0027 5.9E-08 42.4 2.7 24 39-62 2-25 (174)
180 cd01863 Rab18 Rab18 subfamily. 96.4 0.0026 5.6E-08 43.0 2.6 23 40-62 1-23 (161)
181 PRK09984 phosphonate/organopho 96.4 0.0033 7.2E-08 47.1 3.4 37 37-74 29-71 (262)
182 cd03230 ABC_DR_subfamily_A Thi 96.4 0.0028 6E-08 44.8 2.8 33 40-72 27-62 (173)
183 PRK14262 phosphate ABC transpo 96.4 0.0035 7.6E-08 46.4 3.5 28 36-64 27-54 (250)
184 PRK14256 phosphate ABC transpo 96.4 0.0037 8E-08 46.5 3.6 34 40-73 31-72 (252)
185 cd03247 ABCC_cytochrome_bd The 96.4 0.0029 6.3E-08 44.8 2.9 33 40-72 29-64 (178)
186 cd03299 ABC_ModC_like Archeal 96.4 0.0036 7.8E-08 46.2 3.5 37 38-74 24-63 (235)
187 PRK15056 manganese/iron transp 96.4 0.0034 7.4E-08 47.5 3.4 33 40-72 34-69 (272)
188 cd03228 ABCC_MRP_Like The MRP 96.4 0.003 6.5E-08 44.5 3.0 35 38-72 27-64 (171)
189 COG1239 ChlI Mg-chelatase subu 96.4 0.0044 9.6E-08 51.4 4.3 53 10-72 19-71 (423)
190 cd01865 Rab3 Rab3 subfamily. 96.4 0.003 6.5E-08 43.3 2.9 23 40-62 2-24 (165)
191 PRK07261 topology modulation p 96.4 0.004 8.6E-08 44.5 3.6 23 41-63 2-24 (171)
192 cd04127 Rab27A Rab27a subfamil 96.4 0.003 6.6E-08 43.6 2.9 21 40-60 5-25 (180)
193 PRK09862 putative ATP-dependen 96.4 0.0033 7.1E-08 53.0 3.6 26 40-65 211-236 (506)
194 smart00173 RAS Ras subfamily o 96.4 0.0031 6.8E-08 42.6 2.9 21 41-61 2-22 (164)
195 PRK14260 phosphate ABC transpo 96.4 0.0041 8.9E-08 46.6 3.7 25 40-64 34-58 (259)
196 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.4 0.0032 6.9E-08 42.9 2.9 22 40-61 3-24 (166)
197 PRK14274 phosphate ABC transpo 96.4 0.0041 8.9E-08 46.5 3.7 34 40-73 39-80 (259)
198 TIGR00764 lon_rel lon-related 96.4 0.0044 9.4E-08 52.9 4.3 44 9-66 19-64 (608)
199 COG0563 Adk Adenylate kinase a 96.4 0.0033 7.1E-08 45.9 3.1 25 41-65 2-26 (178)
200 TIGR03598 GTPase_YsxC ribosome 96.4 0.0029 6.2E-08 44.5 2.7 28 35-62 14-41 (179)
201 cd04117 Rab15 Rab15 subfamily. 96.4 0.0028 6E-08 43.6 2.6 20 40-59 1-20 (161)
202 cd00876 Ras Ras family. The R 96.4 0.0027 5.8E-08 42.3 2.4 21 41-61 1-21 (160)
203 COG3842 PotA ABC-type spermidi 96.4 0.0046 1E-07 50.1 4.1 37 40-76 32-71 (352)
204 TIGR01241 FtsH_fam ATP-depende 96.4 0.0042 9.1E-08 51.1 4.0 27 41-67 90-116 (495)
205 PRK13632 cbiO cobalt transport 96.4 0.004 8.6E-08 47.1 3.5 34 40-73 36-72 (271)
206 PRK06762 hypothetical protein; 96.4 0.0045 9.8E-08 43.0 3.6 31 41-71 4-35 (166)
207 cd04122 Rab14 Rab14 subfamily. 96.4 0.0033 7.2E-08 43.0 2.9 21 40-60 3-23 (166)
208 PRK13543 cytochrome c biogenes 96.4 0.003 6.6E-08 46.0 2.8 35 37-72 36-73 (214)
209 PRK13539 cytochrome c biogenes 96.4 0.0042 9.1E-08 45.1 3.5 34 39-72 28-64 (207)
210 cd03225 ABC_cobalt_CbiO_domain 96.3 0.0033 7.1E-08 45.3 2.9 33 40-72 28-63 (211)
211 cd04156 ARLTS1 ARLTS1 subfamil 96.3 0.0025 5.4E-08 43.0 2.1 22 41-62 1-22 (160)
212 PRK14240 phosphate transporter 96.3 0.0041 8.9E-08 46.1 3.4 34 40-73 30-71 (250)
213 TIGR00235 udk uridine kinase. 96.3 0.0041 9E-08 45.2 3.4 26 40-65 7-32 (207)
214 PRK13548 hmuV hemin importer A 96.3 0.0041 9E-08 46.7 3.5 33 40-72 29-64 (258)
215 cd03213 ABCG_EPDR ABCG transpo 96.3 0.0042 9E-08 44.8 3.4 34 40-73 36-74 (194)
216 PRK11701 phnK phosphonate C-P 96.3 0.0032 7E-08 47.0 2.9 34 40-73 33-69 (258)
217 TIGR02769 nickel_nikE nickel i 96.3 0.004 8.8E-08 46.8 3.4 33 40-72 38-73 (265)
218 TIGR03771 anch_rpt_ABC anchore 96.3 0.0045 9.8E-08 45.5 3.6 34 40-73 7-43 (223)
219 PRK13644 cbiO cobalt transport 96.3 0.0042 9.1E-08 47.2 3.5 34 40-73 29-65 (274)
220 PRK13949 shikimate kinase; Pro 96.3 0.0049 1.1E-07 44.1 3.7 25 41-65 3-27 (169)
221 PF00158 Sigma54_activat: Sigm 96.3 0.0034 7.3E-08 45.3 2.8 27 39-65 22-48 (168)
222 cd03300 ABC_PotA_N PotA is an 96.3 0.0047 1E-07 45.4 3.6 35 39-73 26-63 (232)
223 cd04116 Rab9 Rab9 subfamily. 96.3 0.0038 8.2E-08 42.7 2.9 22 39-60 5-26 (170)
224 TIGR03005 ectoine_ehuA ectoine 96.3 0.0033 7.1E-08 46.7 2.8 35 37-72 25-62 (252)
225 cd01864 Rab19 Rab19 subfamily. 96.3 0.0037 8E-08 42.7 2.8 22 39-60 3-24 (165)
226 cd04114 Rab30 Rab30 subfamily. 96.3 0.0041 8.9E-08 42.3 3.0 22 39-60 7-28 (169)
227 PRK14242 phosphate transporter 96.3 0.0048 1E-07 45.8 3.6 35 39-73 32-74 (253)
228 PRK00080 ruvB Holliday junctio 96.3 0.0048 1E-07 48.0 3.7 58 4-67 17-79 (328)
229 cd03369 ABCC_NFT1 Domain 2 of 96.3 0.0037 8.1E-08 45.1 3.0 33 40-72 35-70 (207)
230 PRK13640 cbiO cobalt transport 96.3 0.0045 9.8E-08 47.2 3.5 34 40-73 34-73 (282)
231 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0039 8.5E-08 43.5 3.0 23 41-63 5-27 (188)
232 TIGR00382 clpX endopeptidase C 96.3 0.01 2.3E-07 48.8 5.9 57 8-64 77-141 (413)
233 COG0467 RAD55 RecA-superfamily 96.3 0.0061 1.3E-07 45.7 4.2 32 41-72 25-60 (260)
234 PLN03108 Rab family protein; P 96.3 0.0039 8.4E-08 45.3 3.0 24 39-62 6-29 (210)
235 PF06745 KaiC: KaiC; InterPro 96.3 0.0071 1.5E-07 44.2 4.4 33 40-72 20-57 (226)
236 PRK00454 engB GTP-binding prot 96.3 0.0036 7.8E-08 43.8 2.7 27 35-61 20-46 (196)
237 cd04118 Rab24 Rab24 subfamily. 96.3 0.0036 7.9E-08 44.0 2.8 21 40-60 1-21 (193)
238 PRK00300 gmk guanylate kinase; 96.3 0.0049 1.1E-07 44.1 3.4 24 41-64 7-30 (205)
239 cd04115 Rab33B_Rab33A Rab33B/R 96.3 0.0043 9.3E-08 42.9 3.1 23 39-61 2-24 (170)
240 PRK14249 phosphate ABC transpo 96.3 0.0048 1E-07 45.8 3.5 35 37-72 29-71 (251)
241 PRK08533 flagellar accessory p 96.3 0.0057 1.2E-07 45.8 3.9 37 36-73 22-62 (230)
242 PRK11614 livF leucine/isoleuci 96.3 0.0048 1E-07 45.4 3.4 33 40-72 32-67 (237)
243 cd03215 ABC_Carb_Monos_II This 96.3 0.0036 7.9E-08 44.5 2.7 33 40-72 27-62 (182)
244 PRK11264 putative amino-acid A 96.3 0.0038 8.1E-08 46.2 2.9 36 36-72 27-65 (250)
245 TIGR01184 ntrCD nitrate transp 96.3 0.0048 1E-07 45.5 3.5 34 40-73 12-48 (230)
246 PRK14250 phosphate ABC transpo 96.3 0.0037 8.1E-08 46.3 2.8 32 41-72 31-65 (241)
247 TIGR03411 urea_trans_UrtD urea 96.3 0.0049 1.1E-07 45.4 3.5 33 40-72 29-64 (242)
248 cd03250 ABCC_MRP_domain1 Domai 96.3 0.0049 1.1E-07 44.3 3.4 26 40-65 32-57 (204)
249 PRK13641 cbiO cobalt transport 96.3 0.0049 1.1E-07 47.2 3.5 36 37-73 32-70 (287)
250 cd03294 ABC_Pro_Gly_Bertaine T 96.3 0.0049 1.1E-07 46.7 3.5 34 40-73 51-87 (269)
251 PRK14253 phosphate ABC transpo 96.3 0.0056 1.2E-07 45.3 3.8 33 40-72 30-70 (249)
252 cd00877 Ran Ran (Ras-related n 96.3 0.0039 8.4E-08 43.3 2.8 21 40-60 1-21 (166)
253 PRK10070 glycine betaine trans 96.2 0.0051 1.1E-07 50.1 3.8 35 40-74 55-92 (400)
254 cd04139 RalA_RalB RalA/RalB su 96.2 0.0039 8.5E-08 41.7 2.7 21 41-61 2-22 (164)
255 PRK10247 putative ABC transpor 96.2 0.004 8.7E-08 45.7 2.9 34 40-73 34-70 (225)
256 cd03244 ABCC_MRP_domain2 Domai 96.2 0.0041 8.9E-08 45.1 2.9 33 40-72 31-66 (221)
257 PRK10619 histidine/lysine/argi 96.2 0.0052 1.1E-07 45.9 3.5 33 40-72 32-67 (257)
258 TIGR03263 guanyl_kin guanylate 96.2 0.0038 8.2E-08 43.7 2.6 25 41-65 3-27 (180)
259 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.2 0.005 1.1E-07 45.3 3.4 35 37-72 47-84 (224)
260 TIGR01242 26Sp45 26S proteasom 96.2 0.0053 1.1E-07 48.4 3.7 26 41-66 158-183 (364)
261 PRK10575 iron-hydroxamate tran 96.2 0.0047 1E-07 46.5 3.3 33 40-72 38-73 (265)
262 TIGR02324 CP_lyasePhnL phospho 96.2 0.0041 8.9E-08 45.3 2.8 32 40-71 35-69 (224)
263 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.004 8.6E-08 43.2 2.6 26 40-65 27-52 (144)
264 TIGR01288 nodI ATP-binding ABC 96.2 0.0052 1.1E-07 47.4 3.5 33 40-72 31-66 (303)
265 cd03237 ABC_RNaseL_inhibitor_d 96.2 0.0048 1E-07 46.5 3.2 28 37-65 24-51 (246)
266 PRK02496 adk adenylate kinase; 96.2 0.006 1.3E-07 43.2 3.6 29 40-68 2-30 (184)
267 PRK14272 phosphate ABC transpo 96.2 0.0056 1.2E-07 45.3 3.5 34 40-73 31-72 (252)
268 PRK09544 znuC high-affinity zi 96.2 0.0041 9E-08 46.9 2.9 26 40-65 31-56 (251)
269 TIGR03878 thermo_KaiC_2 KaiC d 96.2 0.006 1.3E-07 46.4 3.8 38 35-73 33-74 (259)
270 TIGR02236 recomb_radA DNA repa 96.2 0.0072 1.6E-07 46.6 4.2 35 40-74 96-140 (310)
271 cd01893 Miro1 Miro1 subfamily. 96.2 0.0044 9.6E-08 42.6 2.8 22 40-61 1-22 (166)
272 cd04132 Rho4_like Rho4-like su 96.2 0.0042 9.1E-08 43.3 2.7 21 40-60 1-21 (187)
273 TIGR03873 F420-0_ABC_ATP propo 96.2 0.0053 1.1E-07 45.8 3.4 33 40-72 28-63 (256)
274 PRK13643 cbiO cobalt transport 96.2 0.0055 1.2E-07 47.0 3.5 34 40-73 33-69 (288)
275 PRK15177 Vi polysaccharide exp 96.2 0.0038 8.2E-08 45.8 2.5 26 40-65 14-39 (213)
276 PRK05057 aroK shikimate kinase 96.2 0.0066 1.4E-07 43.4 3.7 28 41-68 6-33 (172)
277 PRK14255 phosphate ABC transpo 96.2 0.0057 1.2E-07 45.4 3.5 33 41-73 33-73 (252)
278 PRK14267 phosphate ABC transpo 96.2 0.0044 9.5E-08 46.0 2.9 36 37-73 29-72 (253)
279 PRK13639 cbiO cobalt transport 96.2 0.0057 1.2E-07 46.4 3.6 38 36-73 25-65 (275)
280 PRK10253 iron-enterobactin tra 96.2 0.005 1.1E-07 46.3 3.2 33 40-72 34-69 (265)
281 PRK13633 cobalt transporter AT 96.2 0.0055 1.2E-07 46.6 3.4 34 40-73 37-73 (280)
282 TIGR01188 drrA daunorubicin re 96.2 0.0055 1.2E-07 47.2 3.5 36 37-73 18-56 (302)
283 cd04107 Rab32_Rab38 Rab38/Rab3 96.2 0.0041 8.8E-08 44.5 2.5 21 40-60 1-21 (201)
284 PRK14248 phosphate ABC transpo 96.2 0.006 1.3E-07 45.9 3.6 34 40-73 48-89 (268)
285 PRK14271 phosphate ABC transpo 96.2 0.006 1.3E-07 46.5 3.6 24 41-64 49-72 (276)
286 PRK13650 cbiO cobalt transport 96.2 0.0059 1.3E-07 46.5 3.5 34 40-73 34-70 (279)
287 TIGR03415 ABC_choXWV_ATP choli 96.2 0.0061 1.3E-07 49.4 3.8 36 36-72 48-86 (382)
288 PRK14241 phosphate transporter 96.2 0.0046 1E-07 46.2 2.9 26 38-63 29-54 (258)
289 PRK13652 cbiO cobalt transport 96.1 0.006 1.3E-07 46.4 3.5 34 40-73 31-67 (277)
290 cd01428 ADK Adenylate kinase ( 96.1 0.0065 1.4E-07 42.7 3.5 24 41-64 1-24 (194)
291 PRK13636 cbiO cobalt transport 96.1 0.0059 1.3E-07 46.6 3.5 37 37-73 30-69 (283)
292 PRK06620 hypothetical protein; 96.1 0.0058 1.2E-07 45.5 3.3 29 41-70 46-74 (214)
293 PRK13635 cbiO cobalt transport 96.1 0.006 1.3E-07 46.6 3.5 37 36-73 31-70 (279)
294 PRK14261 phosphate ABC transpo 96.1 0.0059 1.3E-07 45.4 3.4 33 40-72 33-73 (253)
295 cd03222 ABC_RNaseL_inhibitor T 96.1 0.0046 9.9E-08 45.0 2.7 31 35-65 21-51 (177)
296 cd04123 Rab21 Rab21 subfamily. 96.1 0.0052 1.1E-07 40.9 2.8 22 41-62 2-23 (162)
297 PRK14251 phosphate ABC transpo 96.1 0.0049 1.1E-07 45.7 2.9 34 40-73 31-72 (251)
298 cd01871 Rac1_like Rac1-like su 96.1 0.0052 1.1E-07 43.3 2.9 22 39-60 1-22 (174)
299 PRK13642 cbiO cobalt transport 96.1 0.0062 1.3E-07 46.3 3.5 38 36-74 31-71 (277)
300 PRK11650 ugpC glycerol-3-phosp 96.1 0.0058 1.3E-07 48.7 3.5 33 41-73 32-67 (356)
301 PRK11247 ssuB aliphatic sulfon 96.1 0.0047 1E-07 46.8 2.9 26 40-65 39-64 (257)
302 PRK13646 cbiO cobalt transport 96.1 0.0065 1.4E-07 46.4 3.7 37 37-73 31-70 (286)
303 TIGR03015 pepcterm_ATPase puta 96.1 0.0053 1.1E-07 45.4 3.0 24 41-64 45-68 (269)
304 PRK14246 phosphate ABC transpo 96.1 0.0059 1.3E-07 46.0 3.4 34 38-71 35-71 (257)
305 cd03234 ABCG_White The White s 96.1 0.0056 1.2E-07 44.8 3.1 36 37-72 31-72 (226)
306 cd04163 Era Era subfamily. Er 96.1 0.0049 1.1E-07 40.6 2.6 23 40-62 4-26 (168)
307 cd03288 ABCC_SUR2 The SUR doma 96.1 0.0066 1.4E-07 45.5 3.6 32 41-72 49-83 (257)
308 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.0074 1.6E-07 42.3 3.6 28 42-70 2-29 (183)
309 PRK14235 phosphate transporter 96.1 0.0054 1.2E-07 46.3 3.1 34 40-73 46-87 (267)
310 cd02021 GntK Gluconate kinase 96.1 0.0074 1.6E-07 41.1 3.5 29 42-71 2-30 (150)
311 TIGR02982 heterocyst_DevA ABC 96.1 0.0068 1.5E-07 44.2 3.5 33 40-72 32-67 (220)
312 PF12775 AAA_7: P-loop contain 96.1 0.0077 1.7E-07 46.5 4.0 33 37-69 31-63 (272)
313 PRK00625 shikimate kinase; Pro 96.1 0.0072 1.6E-07 43.8 3.6 28 41-68 2-29 (173)
314 PRK13695 putative NTPase; Prov 96.1 0.0056 1.2E-07 43.2 2.9 22 41-62 2-23 (174)
315 PRK13637 cbiO cobalt transport 96.1 0.0066 1.4E-07 46.5 3.5 34 41-74 35-71 (287)
316 cd00881 GTP_translation_factor 96.1 0.0044 9.6E-08 42.4 2.3 22 41-62 1-22 (189)
317 TIGR01978 sufC FeS assembly AT 96.1 0.0044 9.4E-08 45.5 2.4 37 37-73 24-65 (243)
318 smart00763 AAA_PrkA PrkA AAA d 96.1 0.0054 1.2E-07 49.9 3.2 52 9-65 52-104 (361)
319 PRK13651 cobalt transporter AT 96.1 0.0049 1.1E-07 48.0 2.9 33 40-72 34-69 (305)
320 PRK14526 adenylate kinase; Pro 96.1 0.0074 1.6E-07 45.0 3.7 31 41-71 2-32 (211)
321 PRK13634 cbiO cobalt transport 96.1 0.0066 1.4E-07 46.6 3.5 34 40-73 34-70 (290)
322 TIGR00416 sms DNA repair prote 96.1 0.0066 1.4E-07 50.1 3.7 40 34-74 90-133 (454)
323 TIGR00972 3a0107s01c2 phosphat 96.1 0.0053 1.2E-07 45.5 2.9 25 40-64 28-52 (247)
324 COG3638 ABC-type phosphate/pho 96.1 0.0073 1.6E-07 47.3 3.7 32 41-72 32-66 (258)
325 PRK06217 hypothetical protein; 96.1 0.0081 1.8E-07 42.8 3.8 26 40-65 2-27 (183)
326 cd03267 ABC_NatA_like Similar 96.1 0.0052 1.1E-07 45.5 2.8 37 36-72 44-83 (236)
327 PRK13900 type IV secretion sys 96.1 0.0049 1.1E-07 49.0 2.8 29 37-65 158-186 (332)
328 cd02023 UMPK Uridine monophosp 96.1 0.0053 1.2E-07 44.0 2.8 22 42-63 2-23 (198)
329 COG1122 CbiO ABC-type cobalt t 96.1 0.0065 1.4E-07 46.3 3.4 36 40-75 31-69 (235)
330 PRK11153 metN DL-methionine tr 96.1 0.0065 1.4E-07 47.9 3.5 34 40-73 32-68 (343)
331 PRK13851 type IV secretion sys 96.1 0.0049 1.1E-07 49.4 2.8 30 36-65 159-188 (344)
332 PRK03992 proteasome-activating 96.1 0.0059 1.3E-07 49.1 3.3 27 40-66 166-192 (389)
333 PRK14247 phosphate ABC transpo 96.1 0.0054 1.2E-07 45.5 2.8 34 40-73 30-71 (250)
334 PRK14243 phosphate transporter 96.1 0.0072 1.6E-07 45.5 3.6 33 40-72 37-77 (264)
335 PRK14238 phosphate transporter 96.1 0.0077 1.7E-07 45.6 3.7 33 40-72 51-91 (271)
336 PRK11432 fbpC ferric transport 96.1 0.0066 1.4E-07 48.4 3.5 35 40-74 33-70 (351)
337 PRK14239 phosphate transporter 96.1 0.007 1.5E-07 44.8 3.5 36 37-73 30-73 (252)
338 cd04146 RERG_RasL11_like RERG/ 96.1 0.0049 1.1E-07 42.1 2.4 19 41-59 1-19 (165)
339 PLN03025 replication factor C 96.1 0.0053 1.1E-07 47.6 2.9 23 41-63 36-58 (319)
340 PRK11231 fecE iron-dicitrate t 96.1 0.0052 1.1E-07 45.8 2.7 32 41-72 30-64 (255)
341 TIGR00968 3a0106s01 sulfate AB 96.0 0.0076 1.6E-07 44.6 3.6 34 40-73 27-63 (237)
342 PRK10418 nikD nickel transport 96.0 0.0055 1.2E-07 45.8 2.8 34 40-73 30-70 (254)
343 PRK14252 phosphate ABC transpo 96.0 0.0083 1.8E-07 45.1 3.8 34 40-73 43-84 (265)
344 PRK05480 uridine/cytidine kina 96.0 0.012 2.6E-07 42.5 4.5 26 38-63 5-30 (209)
345 PRK08084 DNA replication initi 96.0 0.0061 1.3E-07 45.6 3.1 32 41-72 47-82 (235)
346 PRK08903 DnaA regulatory inact 96.0 0.0083 1.8E-07 43.8 3.7 32 41-72 44-79 (227)
347 cd00267 ABC_ATPase ABC (ATP-bi 96.0 0.0059 1.3E-07 42.2 2.8 36 37-72 23-61 (157)
348 cd03233 ABC_PDR_domain1 The pl 96.0 0.0049 1.1E-07 44.7 2.5 33 40-72 34-72 (202)
349 cd01394 radB RadB. The archaea 96.0 0.0087 1.9E-07 43.4 3.8 37 36-73 17-57 (218)
350 PRK14270 phosphate ABC transpo 96.0 0.008 1.7E-07 44.6 3.7 34 40-73 31-72 (251)
351 PRK05642 DNA replication initi 96.0 0.01 2.2E-07 44.5 4.2 33 40-72 46-82 (234)
352 PRK13647 cbiO cobalt transport 96.0 0.0072 1.6E-07 45.9 3.5 34 40-73 32-68 (274)
353 TIGR01186 proV glycine betaine 96.0 0.0075 1.6E-07 48.5 3.7 38 37-75 18-58 (363)
354 cd04152 Arl4_Arl7 Arl4/Arl7 su 96.0 0.006 1.3E-07 43.1 2.9 23 39-61 3-25 (183)
355 PRK14531 adenylate kinase; Pro 96.0 0.0084 1.8E-07 42.9 3.7 23 41-63 4-26 (183)
356 TIGR02142 modC_ABC molybdenum 96.0 0.007 1.5E-07 47.9 3.5 33 41-73 25-60 (354)
357 PF13479 AAA_24: AAA domain 96.0 0.0072 1.6E-07 44.5 3.4 32 39-74 3-34 (213)
358 PRK11000 maltose/maltodextrin 96.0 0.007 1.5E-07 48.4 3.5 34 40-73 30-66 (369)
359 cd04135 Tc10 TC10 subfamily. 96.0 0.0058 1.3E-07 41.8 2.7 21 40-60 1-21 (174)
360 cd04110 Rab35 Rab35 subfamily. 96.0 0.006 1.3E-07 43.7 2.9 24 38-61 5-28 (199)
361 cd01897 NOG NOG1 is a nucleola 96.0 0.0054 1.2E-07 41.6 2.5 22 41-62 2-23 (168)
362 TIGR02788 VirB11 P-type DNA tr 96.0 0.0058 1.3E-07 47.6 3.0 30 36-65 141-170 (308)
363 cd04104 p47_IIGP_like p47 (47- 96.0 0.0059 1.3E-07 44.0 2.8 23 40-62 2-24 (197)
364 PTZ00369 Ras-like protein; Pro 96.0 0.0063 1.4E-07 43.1 2.9 22 39-60 5-26 (189)
365 cd04154 Arl2 Arl2 subfamily. 96.0 0.0061 1.3E-07 42.2 2.8 25 37-61 12-36 (173)
366 PRK13549 xylose transporter AT 96.0 0.0067 1.4E-07 49.7 3.4 34 40-73 32-70 (506)
367 PRK13631 cbiO cobalt transport 96.0 0.0076 1.7E-07 47.3 3.6 33 40-72 53-88 (320)
368 cd03223 ABCD_peroxisomal_ALDP 96.0 0.0064 1.4E-07 42.9 2.9 26 40-65 28-53 (166)
369 TIGR02237 recomb_radB DNA repa 96.0 0.0085 1.8E-07 43.1 3.5 33 41-73 14-50 (209)
370 PRK14269 phosphate ABC transpo 96.0 0.0065 1.4E-07 45.1 3.0 35 38-72 27-67 (246)
371 cd01870 RhoA_like RhoA-like su 96.0 0.0063 1.4E-07 41.7 2.7 21 41-61 3-23 (175)
372 PF00071 Ras: Ras family; Int 96.0 0.0062 1.3E-07 41.1 2.6 21 41-61 1-21 (162)
373 cd01121 Sms Sms (bacterial rad 96.0 0.0079 1.7E-07 48.6 3.6 39 35-74 79-121 (372)
374 PRK09825 idnK D-gluconate kina 96.0 0.0099 2.1E-07 42.9 3.8 31 41-72 5-35 (176)
375 cd00227 CPT Chloramphenicol (C 96.0 0.0068 1.5E-07 42.9 2.9 26 41-66 4-29 (175)
376 TIGR02655 circ_KaiC circadian 96.0 0.014 3E-07 48.3 5.1 39 35-74 260-302 (484)
377 smart00174 RHO Rho (Ras homolo 96.0 0.0049 1.1E-07 42.2 2.0 19 42-60 1-19 (174)
378 PRK11144 modC molybdate transp 96.0 0.0078 1.7E-07 47.6 3.5 35 37-72 23-60 (352)
379 PRK11823 DNA repair protein Ra 96.0 0.0089 1.9E-07 49.2 3.9 39 35-74 77-119 (446)
380 PRK08233 hypothetical protein; 95.9 0.011 2.3E-07 41.1 3.8 26 40-65 4-29 (182)
381 PRK09452 potA putrescine/sperm 95.9 0.0079 1.7E-07 48.5 3.5 35 40-74 41-78 (375)
382 cd00878 Arf_Arl Arf (ADP-ribos 95.9 0.0051 1.1E-07 41.5 2.1 22 41-62 1-22 (158)
383 PRK14263 phosphate ABC transpo 95.9 0.0086 1.9E-07 45.2 3.5 25 40-64 35-59 (261)
384 PRK12402 replication factor C 95.9 0.0065 1.4E-07 46.2 2.9 42 11-63 18-60 (337)
385 PRK10744 pstB phosphate transp 95.9 0.0063 1.4E-07 45.6 2.8 34 40-73 40-81 (260)
386 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.012 2.5E-07 43.9 4.1 35 40-74 22-60 (237)
387 cd01858 NGP_1 NGP-1. Autoanti 95.9 0.0067 1.4E-07 42.0 2.7 24 38-61 101-124 (157)
388 PRK14254 phosphate ABC transpo 95.9 0.0084 1.8E-07 46.0 3.5 34 40-73 66-107 (285)
389 PRK11607 potG putrescine trans 95.9 0.0081 1.8E-07 48.4 3.5 34 41-74 47-83 (377)
390 PRK13547 hmuV hemin importer A 95.9 0.0063 1.4E-07 46.5 2.8 26 40-65 28-53 (272)
391 PRK10762 D-ribose transporter 95.9 0.0074 1.6E-07 49.4 3.3 34 40-73 31-67 (501)
392 PLN02200 adenylate kinase fami 95.9 0.018 4E-07 43.4 5.2 30 36-65 40-69 (234)
393 PF14532 Sigma54_activ_2: Sigm 95.9 0.0042 9.2E-08 42.4 1.6 27 39-65 21-47 (138)
394 cd03217 ABC_FeS_Assembly ABC-t 95.9 0.0089 1.9E-07 43.2 3.4 35 40-74 27-66 (200)
395 cd04129 Rho2 Rho2 subfamily. 95.9 0.007 1.5E-07 42.8 2.8 20 41-60 3-22 (187)
396 PRK10851 sulfate/thiosulfate t 95.9 0.0084 1.8E-07 47.8 3.5 34 41-74 30-66 (353)
397 TIGR00763 lon ATP-dependent pr 95.9 0.0099 2.1E-07 51.8 4.2 54 10-68 322-376 (775)
398 cd04125 RabA_like RabA-like su 95.9 0.0068 1.5E-07 42.6 2.7 22 40-61 1-22 (188)
399 PF13521 AAA_28: AAA domain; P 95.9 0.0065 1.4E-07 42.2 2.6 22 41-62 1-22 (163)
400 PRK15093 antimicrobial peptide 95.9 0.0086 1.9E-07 47.0 3.5 36 37-73 32-74 (330)
401 CHL00095 clpC Clp protease ATP 95.9 0.0092 2E-07 52.3 4.0 23 41-63 202-224 (821)
402 PRK14259 phosphate ABC transpo 95.9 0.0067 1.4E-07 45.9 2.8 27 38-64 38-64 (269)
403 PF00437 T2SE: Type II/IV secr 95.9 0.006 1.3E-07 45.7 2.5 31 36-66 124-154 (270)
404 TIGR02314 ABC_MetN D-methionin 95.9 0.0095 2.1E-07 47.5 3.8 35 41-75 33-70 (343)
405 PHA02244 ATPase-like protein 95.9 0.0084 1.8E-07 49.2 3.5 33 37-69 117-149 (383)
406 cd03232 ABC_PDR_domain2 The pl 95.9 0.0069 1.5E-07 43.5 2.7 24 40-63 34-57 (192)
407 cd04141 Rit_Rin_Ric Rit/Rin/Ri 95.9 0.0085 1.8E-07 42.0 3.1 25 40-64 3-28 (172)
408 PTZ00454 26S protease regulato 95.9 0.0091 2E-07 48.6 3.7 27 40-66 180-206 (398)
409 KOG0080|consensus 95.9 0.0069 1.5E-07 45.6 2.7 29 37-65 9-38 (209)
410 PRK14528 adenylate kinase; Pro 95.9 0.01 2.3E-07 42.8 3.6 24 41-64 3-26 (186)
411 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.013 2.8E-07 42.7 4.1 38 35-73 16-63 (235)
412 PTZ00361 26 proteosome regulat 95.9 0.0089 1.9E-07 49.5 3.6 26 40-65 218-243 (438)
413 PRK13546 teichoic acids export 95.9 0.0069 1.5E-07 46.2 2.8 36 36-71 47-85 (264)
414 cd00879 Sar1 Sar1 subfamily. 95.9 0.0072 1.6E-07 42.2 2.7 24 39-62 19-42 (190)
415 PRK09473 oppD oligopeptide tra 95.9 0.0082 1.8E-07 47.3 3.2 37 36-73 40-82 (330)
416 TIGR00150 HI0065_YjeE ATPase, 95.9 0.0093 2E-07 42.1 3.2 25 41-65 24-48 (133)
417 PRK14268 phosphate ABC transpo 95.9 0.0074 1.6E-07 45.2 2.8 25 40-64 39-63 (258)
418 cd04134 Rho3 Rho3 subfamily. 95.8 0.0074 1.6E-07 42.8 2.7 21 41-61 2-22 (189)
419 PRK09700 D-allose transporter 95.8 0.0079 1.7E-07 49.2 3.1 34 40-73 32-68 (510)
420 PRK14266 phosphate ABC transpo 95.8 0.011 2.4E-07 43.7 3.7 34 40-73 30-71 (250)
421 PRK06921 hypothetical protein; 95.8 0.0097 2.1E-07 45.8 3.5 24 40-63 118-141 (266)
422 smart00177 ARF ARF-like small 95.8 0.0074 1.6E-07 42.3 2.6 22 39-60 13-34 (175)
423 PTZ00133 ADP-ribosylation fact 95.8 0.0078 1.7E-07 42.7 2.7 22 39-60 17-38 (182)
424 cd01874 Cdc42 Cdc42 subfamily. 95.8 0.0088 1.9E-07 42.1 2.9 21 40-60 2-22 (175)
425 TIGR03265 PhnT2 putative 2-ami 95.8 0.0098 2.1E-07 47.4 3.5 35 40-74 31-68 (353)
426 PRK14237 phosphate transporter 95.8 0.0085 1.8E-07 45.2 3.0 35 39-73 46-88 (267)
427 cd00071 GMPK Guanosine monopho 95.8 0.013 2.8E-07 40.5 3.7 24 42-65 2-25 (137)
428 cd04109 Rab28 Rab28 subfamily. 95.8 0.0073 1.6E-07 43.9 2.6 21 40-60 1-21 (215)
429 COG4525 TauB ABC-type taurine 95.8 0.016 3.6E-07 45.0 4.6 47 40-86 32-81 (259)
430 PRK10419 nikE nickel transport 95.8 0.0077 1.7E-07 45.6 2.8 35 37-72 37-74 (268)
431 COG1136 SalX ABC-type antimicr 95.8 0.013 2.7E-07 44.9 3.9 36 36-72 29-67 (226)
432 cd04108 Rab36_Rab34 Rab34/Rab3 95.8 0.0081 1.8E-07 42.0 2.7 21 41-61 2-22 (170)
433 COG0714 MoxR-like ATPases [Gen 95.8 0.009 2E-07 46.5 3.2 31 41-71 45-76 (329)
434 cd04149 Arf6 Arf6 subfamily. 95.8 0.0083 1.8E-07 41.9 2.7 22 39-60 9-30 (168)
435 cd04103 Centaurin_gamma Centau 95.8 0.0086 1.9E-07 41.7 2.8 24 41-64 2-26 (158)
436 PRK14258 phosphate ABC transpo 95.8 0.0083 1.8E-07 45.1 2.8 26 40-65 34-59 (261)
437 PLN03071 GTP-binding nuclear p 95.8 0.009 2E-07 43.9 3.0 23 37-59 11-33 (219)
438 PRK10938 putative molybdenum t 95.8 0.0077 1.7E-07 49.0 2.8 32 41-72 31-65 (490)
439 PRK15134 microcin C ABC transp 95.8 0.01 2.2E-07 48.9 3.5 28 37-65 34-61 (529)
440 TIGR01650 PD_CobS cobaltochela 95.8 0.0085 1.8E-07 48.1 3.0 32 41-72 66-98 (327)
441 cd04150 Arf1_5_like Arf1-Arf5- 95.8 0.0079 1.7E-07 41.5 2.5 21 40-60 1-21 (159)
442 PRK03695 vitamin B12-transport 95.8 0.0072 1.6E-07 45.2 2.4 33 40-72 23-57 (248)
443 PRK12377 putative replication 95.8 0.0085 1.8E-07 46.0 2.9 25 40-64 102-126 (248)
444 COG1125 OpuBA ABC-type proline 95.8 0.011 2.4E-07 47.2 3.6 37 40-76 28-67 (309)
445 PRK14265 phosphate ABC transpo 95.8 0.0083 1.8E-07 45.6 2.8 24 40-63 47-70 (274)
446 PRK14244 phosphate ABC transpo 95.8 0.0097 2.1E-07 44.2 3.1 35 37-72 30-72 (251)
447 PRK09087 hypothetical protein; 95.7 0.012 2.5E-07 44.2 3.5 31 41-72 46-76 (226)
448 COG1117 PstB ABC-type phosphat 95.7 0.0088 1.9E-07 46.6 2.9 38 35-72 29-68 (253)
449 PRK09536 btuD corrinoid ABC tr 95.7 0.011 2.3E-07 48.2 3.6 34 40-73 30-66 (402)
450 PRK15064 ABC transporter ATP-b 95.7 0.0079 1.7E-07 49.5 2.8 35 37-71 25-62 (530)
451 PRK00279 adk adenylate kinase; 95.7 0.013 2.9E-07 42.7 3.8 28 41-68 2-29 (215)
452 KOG0079|consensus 95.7 0.0073 1.6E-07 45.1 2.3 29 41-69 10-39 (198)
453 PF12846 AAA_10: AAA-like doma 95.7 0.0091 2E-07 43.8 2.9 21 40-60 2-22 (304)
454 PRK06526 transposase; Provisio 95.7 0.0082 1.8E-07 46.0 2.7 25 38-62 97-121 (254)
455 PTZ00088 adenylate kinase 1; P 95.7 0.015 3.2E-07 44.1 4.0 33 40-72 7-39 (229)
456 cd00882 Ras_like_GTPase Ras-li 95.7 0.0065 1.4E-07 38.4 1.8 21 44-64 1-21 (157)
457 PRK04301 radA DNA repair and r 95.7 0.014 3.1E-07 45.3 4.1 35 40-74 103-147 (317)
458 TIGR02204 MsbA_rel ABC transpo 95.7 0.013 2.8E-07 48.3 4.0 33 41-73 368-403 (576)
459 PRK13342 recombination factor 95.7 0.011 2.4E-07 47.6 3.5 25 41-65 38-62 (413)
460 PF00735 Septin: Septin; Inte 95.7 0.0079 1.7E-07 46.8 2.6 24 39-62 4-27 (281)
461 PLN03118 Rab family protein; P 95.7 0.01 2.3E-07 42.8 3.1 25 37-61 12-36 (211)
462 PRK08181 transposase; Validate 95.7 0.0081 1.8E-07 46.6 2.6 22 41-62 108-129 (269)
463 PRK05541 adenylylsulfate kinas 95.7 0.012 2.7E-07 41.3 3.4 32 40-71 8-43 (176)
464 PRK00411 cdc6 cell division co 95.7 0.014 3E-07 45.7 3.9 32 41-72 57-94 (394)
465 PRK09183 transposase/IS protei 95.7 0.0075 1.6E-07 46.1 2.4 24 39-62 102-125 (259)
466 PHA00729 NTP-binding motif con 95.7 0.0096 2.1E-07 45.6 2.9 23 40-62 18-40 (226)
467 cd04111 Rab39 Rab39 subfamily. 95.7 0.0098 2.1E-07 43.4 2.9 22 40-61 3-24 (211)
468 TIGR01351 adk adenylate kinase 95.7 0.011 2.4E-07 43.0 3.2 25 41-65 1-25 (210)
469 PRK11176 lipid transporter ATP 95.7 0.012 2.6E-07 48.6 3.7 34 41-74 371-407 (582)
470 TIGR03522 GldA_ABC_ATP gliding 95.7 0.013 2.8E-07 45.2 3.7 36 37-73 27-65 (301)
471 cd00820 PEPCK_HprK Phosphoenol 95.7 0.015 3.2E-07 39.8 3.5 31 39-72 15-45 (107)
472 TIGR02639 ClpA ATP-dependent C 95.7 0.012 2.7E-07 50.8 3.9 25 39-63 203-227 (731)
473 PRK14245 phosphate ABC transpo 95.7 0.0097 2.1E-07 44.2 2.8 34 40-73 30-71 (250)
474 PRK15079 oligopeptide ABC tran 95.7 0.012 2.6E-07 46.4 3.5 34 41-74 49-85 (331)
475 cd04112 Rab26 Rab26 subfamily. 95.7 0.0093 2E-07 42.3 2.6 20 41-60 2-21 (191)
476 smart00178 SAR Sar1p-like memb 95.7 0.011 2.3E-07 41.9 2.8 23 39-61 17-39 (184)
477 PRK00089 era GTPase Era; Revie 95.7 0.0087 1.9E-07 45.4 2.6 22 40-61 6-27 (292)
478 cd04151 Arl1 Arl1 subfamily. 95.7 0.0079 1.7E-07 40.8 2.1 20 41-60 1-20 (158)
479 PRK04213 GTP-binding protein; 95.6 0.0093 2E-07 42.2 2.5 23 39-61 9-31 (201)
480 PRK04040 adenylate kinase; Pro 95.6 0.015 3.3E-07 42.4 3.7 25 40-64 3-27 (188)
481 PRK08727 hypothetical protein; 95.6 0.018 3.8E-07 43.0 4.1 32 41-72 43-78 (233)
482 TIGR02639 ClpA ATP-dependent C 95.6 0.018 3.8E-07 49.9 4.6 26 41-66 486-511 (731)
483 cd04130 Wrch_1 Wrch-1 subfamil 95.6 0.011 2.3E-07 40.9 2.7 20 40-59 1-20 (173)
484 KOG0739|consensus 95.6 0.022 4.8E-07 46.7 4.9 30 40-70 167-196 (439)
485 cd03236 ABC_RNaseL_inhibitor_d 95.6 0.0094 2E-07 45.3 2.6 26 40-65 27-52 (255)
486 PRK10982 galactose/methyl gala 95.6 0.011 2.4E-07 48.2 3.2 33 41-73 26-61 (491)
487 PRK14264 phosphate ABC transpo 95.6 0.014 3E-07 45.2 3.6 34 40-73 72-113 (305)
488 PRK09302 circadian clock prote 95.6 0.011 2.5E-07 48.6 3.3 61 1-74 1-71 (509)
489 TIGR02858 spore_III_AA stage I 95.6 0.01 2.2E-07 46.1 2.8 26 40-65 112-137 (270)
490 cd01852 AIG1 AIG1 (avrRpt2-ind 95.6 0.0091 2E-07 42.8 2.4 22 40-61 1-22 (196)
491 PRK09580 sufC cysteine desulfu 95.6 0.0083 1.8E-07 44.2 2.2 34 40-73 28-66 (248)
492 COG4604 CeuD ABC-type enteroch 95.6 0.014 3.1E-07 45.2 3.6 32 42-73 30-64 (252)
493 cd04171 SelB SelB subfamily. 95.6 0.01 2.2E-07 39.7 2.5 21 41-61 2-22 (164)
494 cd04144 Ras2 Ras2 subfamily. 95.6 0.01 2.3E-07 42.0 2.6 20 41-60 1-20 (190)
495 PRK11608 pspF phage shock prot 95.6 0.011 2.3E-07 46.5 2.9 28 38-65 28-55 (326)
496 cd03272 ABC_SMC3_euk Eukaryoti 95.6 0.01 2.2E-07 43.6 2.7 23 41-63 25-47 (243)
497 TIGR01243 CDC48 AAA family ATP 95.6 0.014 3E-07 50.4 3.8 27 40-66 213-239 (733)
498 COG4178 ABC-type uncharacteriz 95.6 0.01 2.2E-07 51.2 3.0 28 37-65 418-445 (604)
499 PF02421 FeoB_N: Ferrous iron 95.6 0.0094 2E-07 43.0 2.4 24 40-63 1-24 (156)
500 TIGR02868 CydC thiol reductant 95.6 0.013 2.9E-07 47.9 3.5 34 40-73 362-398 (529)
No 1
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.4e-34 Score=242.05 Aligned_cols=92 Identities=43% Similarity=0.718 Sum_probs=89.6
Q ss_pred CCCchhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEEEeecccCCCCceEEEE
Q psy9645 7 RQRRTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGASAVGLTAYVG 84 (98)
Q Consensus 7 ~~~~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~~ss~~GLTasv~ 84 (98)
-|+.+||++||+| ||||||+.|..++|+++||+|||||+||||++|||||+++++++||+|||||++||++||||+++
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 3788999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceEEecCC
Q psy9645 85 KHPTTKEWTVEADI 98 (98)
Q Consensus 85 r~~~~~ew~leaGA 98 (98)
||+.+|||+|||||
T Consensus 365 rd~~tge~~LeaGA 378 (682)
T COG1241 365 RDKVTGEWVLEAGA 378 (682)
T ss_pred EccCCCeEEEeCCE
Confidence 99988899999998
No 2
>KOG0480|consensus
Probab=100.00 E-value=2.4e-33 Score=236.96 Aligned_cols=91 Identities=40% Similarity=0.563 Sum_probs=88.7
Q ss_pred CCchhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEEEeecccCCCCceEEEEe
Q psy9645 8 QRRTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGASAVGLTAYVGK 85 (98)
Q Consensus 8 ~~~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~~ss~~GLTasv~r 85 (98)
|-.+|||.||++ |+||||+.|...+|+.+||+||||+|||||+||||||++++.++||+|||||+.||.+||||+|+|
T Consensus 345 PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvk 424 (764)
T KOG0480|consen 345 PSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVK 424 (764)
T ss_pred ccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEe
Confidence 567889999999 999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEecCC
Q psy9645 86 HPTTKEWTVEADI 98 (98)
Q Consensus 86 ~~~~~ew~leaGA 98 (98)
|+.+|+|++||||
T Consensus 425 D~esgdf~iEAGA 437 (764)
T KOG0480|consen 425 DEESGDFTIEAGA 437 (764)
T ss_pred cCCCCceeeecCc
Confidence 9999999999998
No 3
>KOG0477|consensus
Probab=99.98 E-value=5.2e-33 Score=235.18 Aligned_cols=91 Identities=62% Similarity=0.894 Sum_probs=88.6
Q ss_pred CCchhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEEEeecccCCCCceEEEEe
Q psy9645 8 QRRTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGASAVGLTAYVGK 85 (98)
Q Consensus 8 ~~~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~~ss~~GLTasv~r 85 (98)
|-.+||++||.| |+||||++|++..++++||+||+||+|||||+|||||||+++++||+|++||.|+|++||||+|.|
T Consensus 449 PsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~K 528 (854)
T KOG0477|consen 449 PSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRK 528 (854)
T ss_pred chhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEee
Confidence 557889999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEecCC
Q psy9645 86 HPTTKEWTVEADI 98 (98)
Q Consensus 86 ~~~~~ew~leaGA 98 (98)
|+.++||+|||||
T Consensus 529 dPvtrEWTLEaGA 541 (854)
T KOG0477|consen 529 DPVTREWTLEAGA 541 (854)
T ss_pred CCccceeeeccCe
Confidence 9999999999998
No 4
>KOG0482|consensus
Probab=99.97 E-value=3.4e-31 Score=220.92 Aligned_cols=91 Identities=42% Similarity=0.672 Sum_probs=87.6
Q ss_pred CCchhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEEEeecccCCCCceEEEEe
Q psy9645 8 QRRTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGASAVGLTAYVGK 85 (98)
Q Consensus 8 ~~~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~~ss~~GLTasv~r 85 (98)
|-.+||+||||| |.|+||+.+...||+++||+|||||.||||+.|||||+|+.+++||++||+|++||++||||+|.|
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmk 421 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMK 421 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhc
Confidence 345669999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEecCC
Q psy9645 86 HPTTKEWTVEADI 98 (98)
Q Consensus 86 ~~~~~ew~leaGA 98 (98)
|+.+||.+||+||
T Consensus 422 DpvTgEM~LEGGA 434 (721)
T KOG0482|consen 422 DPVTGEMVLEGGA 434 (721)
T ss_pred CCCCCeeEeccce
Confidence 9999999999997
No 5
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.97 E-value=1.6e-31 Score=209.28 Aligned_cols=91 Identities=44% Similarity=0.766 Sum_probs=78.1
Q ss_pred CCchhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEEEeecccCCCCceEEEEe
Q psy9645 8 QRRTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGASAVGLTAYVGK 85 (98)
Q Consensus 8 ~~~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~~ss~~GLTasv~r 85 (98)
|-.+||+++|+| |+||||+.+..++|.+.|++||||||||||+||||||+|+++++||++|++|+++|.+||||++.|
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecc
Confidence 567889999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEecCC
Q psy9645 86 HPTTKEWTVEADI 98 (98)
Q Consensus 86 ~~~~~ew~leaGA 98 (98)
|+.+++|++||||
T Consensus 104 d~~~~~~~leaGa 116 (331)
T PF00493_consen 104 DPVTGEWVLEAGA 116 (331)
T ss_dssp CGGTSSECEEE-H
T ss_pred ccccceeEEeCCc
Confidence 9889999999996
No 6
>KOG0481|consensus
Probab=99.96 E-value=1.7e-30 Score=216.88 Aligned_cols=91 Identities=45% Similarity=0.675 Sum_probs=88.8
Q ss_pred CCchhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEEEeecccCCCCceEEEEe
Q psy9645 8 QRRTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGASAVGLTAYVGK 85 (98)
Q Consensus 8 ~~~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~~ss~~GLTasv~r 85 (98)
|-.|||+|||+| |.||||+.|.++||.+.||+|||||+|||||.|||||||+++++|-+|||||++||++||||+|.|
T Consensus 331 PSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~R 410 (729)
T KOG0481|consen 331 PSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIR 410 (729)
T ss_pred chhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEe
Confidence 667889999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEecCC
Q psy9645 86 HPTTKEWTVEADI 98 (98)
Q Consensus 86 ~~~~~ew~leaGA 98 (98)
|+.+-||.+|+||
T Consensus 411 D~~tReFylEGGA 423 (729)
T KOG0481|consen 411 DPSTREFYLEGGA 423 (729)
T ss_pred cCCcceEEEecce
Confidence 9989999999997
No 7
>KOG0478|consensus
Probab=99.96 E-value=1.2e-30 Score=221.66 Aligned_cols=91 Identities=43% Similarity=0.776 Sum_probs=86.9
Q ss_pred CCchh-HHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEEEeecccCCCCceEEEE
Q psy9645 8 QRRTW-MDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGASAVGLTAYVG 84 (98)
Q Consensus 8 ~~~~g-~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~~ss~~GLTasv~ 84 (98)
-|.|+ ||++|+| ||||||+.+....+.+.|++|||||||||||+|||||+|+.+++||++||||+++|++||||+|+
T Consensus 428 APsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 428 APSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred chhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 36666 9999999 99999999988777799999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceEEecCC
Q psy9645 85 KHPTTKEWTVEADI 98 (98)
Q Consensus 85 r~~~~~ew~leaGA 98 (98)
||+++++|++|.||
T Consensus 508 rd~dtkqlVLesGA 521 (804)
T KOG0478|consen 508 KDPDTRQLVLESGA 521 (804)
T ss_pred ecCccceeeeecCc
Confidence 99999999999997
No 8
>KOG0479|consensus
Probab=99.95 E-value=3.7e-28 Score=204.99 Aligned_cols=91 Identities=41% Similarity=0.526 Sum_probs=88.8
Q ss_pred CCchhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEEEeecccCCCCceEEEEe
Q psy9645 8 QRRTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGASAVGLTAYVGK 85 (98)
Q Consensus 8 ~~~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~~ss~~GLTasv~r 85 (98)
|-.+||+.||+| |.|.||++|++.+|+++||+|||||||||++.|||||||+-+.+|++|-|+|.+||++||||+|+-
T Consensus 301 PSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTt 380 (818)
T KOG0479|consen 301 PSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTT 380 (818)
T ss_pred cccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEee
Confidence 567889999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEecCC
Q psy9645 86 HPTTKEWTVEADI 98 (98)
Q Consensus 86 ~~~~~ew~leaGA 98 (98)
|+++||..|||||
T Consensus 381 D~eTGERRLEAGA 393 (818)
T KOG0479|consen 381 DQETGERRLEAGA 393 (818)
T ss_pred ccccchhhhhcCc
Confidence 9999999999998
No 9
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.87 E-value=4.9e-23 Score=179.39 Aligned_cols=92 Identities=34% Similarity=0.560 Sum_probs=82.8
Q ss_pred CCCchhHHHHHHH--hhhcCCcccCC-----CCC----ccccCceEEEeeCCCChhhHHHHHHHHHhCCceEEEeecccC
Q psy9645 7 RQRRTWMDDIKEW--TNIPGNQQAGA-----SEK----HRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGAS 75 (98)
Q Consensus 7 ~~~~~g~~~iK~a--L~L~GG~~~~~-----~~g----~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~~ss 75 (98)
.|..+||++||+| |+||||+.+.. +|| +++||++||||+||||||||+|++++.+++||++|++|..++
T Consensus 449 aP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 449 APSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred CCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 3667789999999 99999998743 344 889999999999999999999999999999999999999999
Q ss_pred CCCceEEEE-ecCCCCceEEecCC
Q psy9645 76 AVGLTAYVG-KHPTTKEWTVEADI 98 (98)
Q Consensus 76 ~~GLTasv~-r~~~~~ew~leaGA 98 (98)
.+|||+++. ++..+|+|.+|+||
T Consensus 529 ~vgLTa~~~~~d~~tG~~~le~Ga 552 (915)
T PTZ00111 529 SVGLTASIKFNESDNGRAMIQPGA 552 (915)
T ss_pred cccccchhhhcccccCcccccCCc
Confidence 999999987 55568999999996
No 10
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.85 E-value=9.9e-22 Score=161.40 Aligned_cols=91 Identities=49% Similarity=0.748 Sum_probs=86.8
Q ss_pred CCchhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEEEeecccCCCCceEEEEe
Q psy9645 8 QRRTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGASAVGLTAYVGK 85 (98)
Q Consensus 8 ~~~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~~ss~~GLTasv~r 85 (98)
|..+||+++|+| |+|+||+.+...+|.++|+++||||+||||+|||+|+|++++++||++|++|.+++.+|||+++.+
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 667889999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEecCC
Q psy9645 86 HPTTKEWTVEADI 98 (98)
Q Consensus 86 ~~~~~ew~leaGA 98 (98)
++.+|+|.+++|+
T Consensus 283 ~~~~g~~~~~~G~ 295 (509)
T smart00350 283 DPETREFTLEGGA 295 (509)
T ss_pred ccCcceEEecCcc
Confidence 9889999999986
No 11
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.98 E-value=7.5e-06 Score=61.85 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=34.0
Q ss_pred CchhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 9 RRTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 9 ~~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-.+|++..|+| ++..|+ .|+||+|+||+|||.+.+.+..|.|.
T Consensus 4 dI~GQe~aKrAL~iAAaG~--------------h~lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAGG--------------HHLLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp CSSSTHHHHHHHHHHHHCC----------------EEEES-CCCTHHHHHHHHHHCS--
T ss_pred hhcCcHHHHHHHHHHHcCC--------------CCeEEECCCCCCHHHHHHHHHHhCCC
Confidence 36899999999 666664 29999999999999999999999998
No 12
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.84 E-value=1.6e-05 Score=53.85 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=30.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceE-EEeecc-cCCCCceEEEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAI-FTTGQG-ASAVGLTAYVG 84 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv-~~sG~~-ss~~GLTasv~ 84 (98)
||+|+|+||+|||+|+++++++....+ +++... ++..-|.-.+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~ 46 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYD 46 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeee
Confidence 699999999999999999998887654 344433 34444444433
No 13
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.71 E-value=4.6e-05 Score=48.32 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=26.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc----eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR----AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr----sv~~sG~ 72 (98)
-+++|+|+||+|||++++.++..+.. .++++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~ 39 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE 39 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence 38999999999999999988877655 4454444
No 14
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.66 E-value=7.8e-05 Score=59.50 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=35.3
Q ss_pred CchhHHHHHHHh--hhc-CCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 9 RRTWMDDIKEWT--NIP-GNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 9 ~~~g~~~iK~aL--~L~-GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-.+|++++|++| .++ -| --|+||.|.||+|||++.|.++++.|.
T Consensus 9 ~i~Gq~~~~~~l~~~~~~~~-------------~~~vLl~G~pG~gKT~lar~la~llP~ 55 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAIDPG-------------IGGVLVFGDRGTGKSTAVRALAALLPL 55 (334)
T ss_pred HhCCHHHHHHHHHHHHhccC-------------CCcEEEEcCCCCCHHHHHHHHHHHCCC
Confidence 357999999993 333 11 128999999999999999999999985
No 15
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.60 E-value=9e-05 Score=59.14 Aligned_cols=44 Identities=27% Similarity=0.372 Sum_probs=35.9
Q ss_pred chhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 10 RTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 10 ~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.+|++.+|+| +.++--. .| |+||.|+||+|||+|+|.++.+.|.
T Consensus 6 ivgq~~~~~al~~~~~~~~----------~g--~vli~G~~G~gKttl~r~~~~~~~~ 51 (337)
T TIGR02030 6 IVGQDEMKLALLLNVIDPK----------IG--GVMVMGDRGTGKSTAVRALAALLPE 51 (337)
T ss_pred cccHHHHHHHHHHHhcCCC----------CC--eEEEEcCCCCCHHHHHHHHHHhhcc
Confidence 6899999999 5555311 11 8999999999999999999999875
No 16
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.52 E-value=6.4e-05 Score=56.70 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=35.1
Q ss_pred chhHHHHHHH-hhhcCCcc---cCCCCCcc-ccCceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 10 RTWMDDIKEW-TNIPGNQQ---AGASEKHR-VRGDINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 10 ~~g~~~iK~a-L~L~GG~~---~~~~~g~~-~Rg~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.+|++++|.. -.++...+ .....|.. .....|++|.|+||||||++.+.+++.+
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 5899999988 22222211 11112222 2234699999999999999999998753
No 17
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.49 E-value=0.00015 Score=47.48 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.5
Q ss_pred EEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~pr 65 (98)
|||.|+||+|||++++.+++.+-.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~ 24 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF 24 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc
Confidence 699999999999999999888654
No 18
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.00034 Score=54.37 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=40.0
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccCCCCceEEEEec
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGASAVGLTAYVGKH 86 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss~~GLTasv~r~ 86 (98)
.-.--+.|+|++|||||||||.++.+... .|++.|...+..+=-.+++..
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 33348999999999999999999999766 577888776777777777665
No 19
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.36 E-value=0.00026 Score=45.51 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.++++.|+||+|||+|++.+.+..
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998775
No 20
>CHL00181 cbbX CbbX; Provisional
Probab=97.34 E-value=0.00019 Score=55.72 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=34.0
Q ss_pred chhHHHHHHH-hhh-----cCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 10 RTWMDDIKEW-TNI-----PGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 10 ~~g~~~iK~a-L~L-----~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.+|++++|+. ..+ +-...+...-. ..+...|++|.|+||||||++.+.+++.+
T Consensus 25 l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~-~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 25 LVGLAPVKTRIREIAALLLIDRLRKNLGLT-SSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999987 222 21111111111 12234699999999999999999997764
No 21
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.31 E-value=0.00028 Score=56.82 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=36.2
Q ss_pred chhHHHHHHHhhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceE
Q psy9645 10 RTWMDDIKEWTNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAI 67 (98)
Q Consensus 10 ~~g~~~iK~aL~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv 67 (98)
.+|+|++|+||.+.-=.++ . | ++||.|++|||||+|+|.+.+++|..-
T Consensus 19 ivGq~~~k~al~~~~~~p~-------~-~--~vli~G~~GtGKs~~ar~~~~~l~~~~ 66 (350)
T CHL00081 19 IVGQEEMKLALILNVIDPK-------I-G--GVMIMGDRGTGKSTTIRALVDLLPEIE 66 (350)
T ss_pred HhChHHHHHHHHHhccCCC-------C-C--eEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5899999999333221111 1 2 699999999999999999999988633
No 22
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.27 E-value=0.00035 Score=59.24 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=45.8
Q ss_pred HHHHHHhhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceE-EEeec-ccCCCCceEEEEec--CCC
Q psy9645 14 DDIKEWTNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAI-FTTGQ-GASAVGLTAYVGKH--PTT 89 (98)
Q Consensus 14 ~~iK~aL~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv-~~sG~-~ss~~GLTasv~r~--~~~ 89 (98)
|++|+||.|+-=.+. --||||.|+||||||+|++++.+++|+.. |+.-. +.+...|...+.-. -.+
T Consensus 1 ~~~~~Al~l~av~p~----------~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~ 70 (589)
T TIGR02031 1 ERAKLALTLLAVDPS----------LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAG 70 (589)
T ss_pred ChHHHHHHHhccCCC----------cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhc
Confidence 467888555432111 12999999999999999999999999852 44332 23444444443211 125
Q ss_pred CceEEecC
Q psy9645 90 KEWTVEAD 97 (98)
Q Consensus 90 ~ew~leaG 97 (98)
|+|.++.|
T Consensus 71 g~~~~~~G 78 (589)
T TIGR02031 71 GQRVTQPG 78 (589)
T ss_pred CcccCCCC
Confidence 67776665
No 23
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0004 Score=57.86 Aligned_cols=40 Identities=30% Similarity=0.637 Sum_probs=32.5
Q ss_pred ccccCceEEEeeCCCChhhHHH-HHHHHHhCCc--eEEEeeccc
Q psy9645 34 HRVRGDINVLLCGDPGTAKSQF-LKYMEKIGPR--AIFTTGQGA 74 (98)
Q Consensus 34 ~~~Rg~ihiLliGdpGtGKSql-L~~~~~l~pr--sv~~sG~~s 74 (98)
.-++|. -+||-||||.||||| |+.+++++.+ ..|+||.-|
T Consensus 89 G~V~Gs-~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES 131 (456)
T COG1066 89 GLVPGS-VILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEES 131 (456)
T ss_pred Cccccc-EEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcC
Confidence 356664 899999999999998 6677788755 999999865
No 24
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.20 E-value=0.00034 Score=45.41 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=20.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
+|+++|++|+|||+|++....-..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999998876543
No 25
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.15 E-value=0.0002 Score=55.74 Aligned_cols=54 Identities=28% Similarity=0.309 Sum_probs=43.2
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccCCCCceEEEEecCCCC
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGASAVGLTAYVGKHPTTK 90 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss~~GLTasv~r~~~~~ 90 (98)
-.+|+ .+-|||.+|+|||||||.++.+.|+ .|.++|+-+.-..|.+.+..+ .+|
T Consensus 50 i~~Ge-~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pe-lTG 106 (249)
T COG1134 50 IYKGE-RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPE-LTG 106 (249)
T ss_pred EeCCC-EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcc-cch
Confidence 34454 8999999999999999999999887 788889877777777666554 344
No 26
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.13 E-value=0.00041 Score=44.92 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.7
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
+++|+++|++|+|||+|++.+..-
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 378999999999999999877644
No 27
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.09 E-value=0.0007 Score=45.37 Aligned_cols=28 Identities=36% Similarity=0.657 Sum_probs=22.5
Q ss_pred EEeeCCCChhhHHHHHHHHHhCCceEEEe
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIGPRAIFTT 70 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~prsv~~s 70 (98)
|+++|.||+|||+|.+...+..+ ...++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~-~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG-AVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-CEEEe
Confidence 78999999999999998886655 34444
No 28
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.08 E-value=0.00081 Score=51.13 Aligned_cols=41 Identities=22% Similarity=0.410 Sum_probs=31.9
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccCCC
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGASAV 77 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss~~ 77 (98)
.+|+ .++|.|++|||||+|||.++.+.|. .+|--|..-|..
T Consensus 27 ~~Ge-~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~ 70 (223)
T COG4619 27 RAGE-FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70 (223)
T ss_pred cCCc-eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccccc
Confidence 3444 8999999999999999999999876 455566554443
No 29
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.06 E-value=0.001 Score=58.25 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=38.2
Q ss_pred chhHHHHHHH-hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 10 RTWMDDIKEW-TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 10 ~~g~~~iK~a-L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
-+|++.+|+. +..+-- .+.. ...++. .++|+|+||+|||++++.+++...+..+
T Consensus 324 ~~g~~~vK~~i~~~l~~-~~~~---~~~~g~-~i~l~GppG~GKTtl~~~ia~~l~~~~~ 378 (784)
T PRK10787 324 HYGLERVKDRILEYLAV-QSRV---NKIKGP-ILCLVGPPGVGKTSLGQSIAKATGRKYV 378 (784)
T ss_pred ccCHHHHHHHHHHHHHH-HHhc---ccCCCc-eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4789999998 322221 1110 124566 5999999999999999999988777654
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.04 E-value=0.0014 Score=49.74 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=33.7
Q ss_pred chhHHHHHHH-hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 10 RTWMDDIKEW-TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 10 ~~g~~~iK~a-L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.+|.+++|.. ...+-..... ....-|++|.|+||+|||.|++.+++.....++
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~ 59 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMR------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK 59 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhc------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4788888877 2222111100 111238999999999999999988876554443
No 31
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.04 E-value=0.00064 Score=56.86 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=24.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.|++|+|+||+|||+|++.+..+.|+
T Consensus 212 ~~vlliG~pGsGKTtlar~l~~llp~ 237 (499)
T TIGR00368 212 HNLLLFGPPGSGKTMLASRLQGILPP 237 (499)
T ss_pred CEEEEEecCCCCHHHHHHHHhcccCC
Confidence 49999999999999999999998876
No 32
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.02 E-value=0.00065 Score=52.88 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=29.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
-.+.|+|++|+|||||||.++.+.+. .|+..|+..
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i 66 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence 47899999999999999999997764 588888643
No 33
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.99 E-value=0.0004 Score=46.48 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=28.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
-++.|+|.+|+|||+||+.++.+.+. .|++.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~ 49 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDI 49 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEG
T ss_pred CEEEEEccCCCccccceeeecccccccccccccccccc
Confidence 38999999999999999999988764 555555433
No 34
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.00086 Score=53.91 Aligned_cols=54 Identities=24% Similarity=0.261 Sum_probs=40.4
Q ss_pred hhHHHHHHHhhhcCCcccCCCCCccccCce--EEEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 11 TWMDDIKEWTNIPGNQQAGASEKHRVRGDI--NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 11 ~g~~~iK~aL~L~GG~~~~~~~g~~~Rg~i--hiLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
||.+.+|.-|++|=-..| .|++. |+||.|+||.||++|...+++-..-.+.++.
T Consensus 29 iGQ~~vk~~L~ifI~AAk-------~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts 84 (332)
T COG2255 29 IGQEKVKEQLQIFIKAAK-------KRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITS 84 (332)
T ss_pred cChHHHHHHHHHHHHHHH-------hcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc
Confidence 578888888777654443 34444 9999999999999999988877666555444
No 35
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.94 E-value=0.0013 Score=50.80 Aligned_cols=54 Identities=19% Similarity=0.131 Sum_probs=34.8
Q ss_pred chhHHHHHHHhhhcCCcccCCCCCccccC--ceEEEeeCCCChhhHHHHHHHHHhCCceEEEe
Q psy9645 10 RTWMDDIKEWTNIPGNQQAGASEKHRVRG--DINVLLCGDPGTAKSQFLKYMEKIGPRAIFTT 70 (98)
Q Consensus 10 ~~g~~~iK~aL~L~GG~~~~~~~g~~~Rg--~ihiLliGdpGtGKSqlL~~~~~l~prsv~~s 70 (98)
.||++++|.-+.++=-..+ .|+ --|+||.|+||+|||+|.+.+++-.-..++.+
T Consensus 26 fiGQ~~l~~~l~i~i~aa~-------~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 26 FIGQEHLKGNLKILIRAAK-------KRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp S-S-HHHHHHHHHHHHHHH-------CTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred ccCcHHHHhhhHHHHHHHH-------hcCCCcceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence 4688888877444322211 232 23999999999999999999998877766544
No 36
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.94 E-value=0.0012 Score=47.37 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=28.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEeecccC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGAS 75 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~sG~~ss 75 (98)
.+.|+|.+|+|||+|++.++...+..++.+..-.+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~ 38 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYIT 38 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECC
Confidence 68999999999999999998887666666665433
No 37
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.91 E-value=0.00096 Score=44.51 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
+.|+++|+||+|||+|++....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999876654
No 38
>PF05729 NACHT: NACHT domain
Probab=96.90 E-value=0.0008 Score=45.33 Aligned_cols=20 Identities=30% Similarity=0.763 Sum_probs=17.6
Q ss_pred EEeeCCCChhhHHHHHHHHH
Q psy9645 42 VLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~ 61 (98)
++|.|+||+|||++++.++.
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 68999999999999987663
No 39
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.89 E-value=0.0018 Score=46.10 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=33.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE-Eeecc-cCCCCceEEEEecCCCCceEEecC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF-TTGQG-ASAVGLTAYVGKHPTTKEWTVEAD 97 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~-~sG~~-ss~~GLTasv~r~~~~~ew~leaG 97 (98)
|+||.|.||+|||++.+.+++.....+. +-.+. -.-.-++..-+.+..+++|.+..|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~G 59 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPG 59 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecC
Confidence 8999999999999999999888765432 22221 122345555666666788887766
No 40
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.88 E-value=0.0011 Score=44.14 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=24.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC----CceEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG----PRAIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~----prsv~~sG~ 72 (98)
++++.|+||+|||+|++.++... .+.+|.+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 57899999999999988776554 345666554
No 41
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.88 E-value=0.00084 Score=47.84 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.7
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
++.++|+++|+||+|||+|++.+..-
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc
Confidence 55689999999999999999887754
No 42
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.87 E-value=0.00078 Score=44.13 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.9
Q ss_pred EEeeCCCChhhHHHHHHHHHhC
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~ 63 (98)
|+|.|.||+|||++.+.+++..
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999988764
No 43
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.0011 Score=53.44 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=30.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGASA 76 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss~ 76 (98)
-.+.|+|++|||||||||.++.|-+. .|++.|...+.
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~ 69 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD 69 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 47899999999999999999988765 67777775554
No 44
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.85 E-value=0.00096 Score=44.77 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=19.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
++|+++|+||+|||+|++....-
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999876643
No 45
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.83 E-value=0.0012 Score=45.52 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.3
Q ss_pred ceEEEeeCCCChhhHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~ 60 (98)
+++|+++|+||+|||+|++...
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~ 22 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFV 22 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999988755
No 46
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.82 E-value=0.0017 Score=55.32 Aligned_cols=46 Identities=24% Similarity=0.186 Sum_probs=35.0
Q ss_pred CchhHHHHHHHhhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 9 RRTWMDDIKEWTNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 9 ~~~g~~~iK~aL~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
-.+|++.+|++|.+.-=... . -+|||.|.||||||+|+|.+.+++|
T Consensus 5 ~ivGq~~~~~al~~~av~~~---~-------g~vli~G~~GtgKs~lar~l~~~lp 50 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDPR---I-------GGVLIRGEKGTAKSTAARGLAALLP 50 (633)
T ss_pred hhcChHHHHHHHHHHhhCCC---C-------CeEEEEcCCCCcHHHHHHHHHHhCC
Confidence 36899999999333221111 1 1699999999999999999999997
No 47
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.82 E-value=0.0009 Score=43.84 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEeeCCCChhhHHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~ 61 (98)
+|+++|.||+|||+|++.+.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 48
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.82 E-value=0.0013 Score=47.60 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=27.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 66 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGT 66 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCE
Confidence 37999999999999999999999764 4566664
No 49
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.81 E-value=0.0013 Score=48.32 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=28.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 65 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTD 65 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEE
Confidence 37999999999999999999988764 56666643
No 50
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.81 E-value=0.0015 Score=47.06 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=28.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~ 64 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQS 64 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCc
Confidence 38999999999999999999998754 56666653
No 51
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.81 E-value=0.0013 Score=47.55 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=27.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.|. .|+..|.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 67 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGF 67 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCE
Confidence 37899999999999999999999765 4555554
No 52
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00098 Score=56.10 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=36.5
Q ss_pred chhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 10 RTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 10 ~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.+|.+.-|+| ++-.|| .|+|++|+||||||-|.+.+..|+|.
T Consensus 181 V~GQ~~AKrAleiAAAGg--------------HnLl~~GpPGtGKTmla~Rl~~lLPp 224 (490)
T COG0606 181 VKGQEQAKRALEIAAAGG--------------HNLLLVGPPGTGKTMLASRLPGLLPP 224 (490)
T ss_pred hcCcHHHHHHHHHHHhcC--------------CcEEEecCCCCchHHhhhhhcccCCC
Confidence 4678888888 666776 38999999999999999999999988
No 53
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.80 E-value=0.00088 Score=51.74 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=33.7
Q ss_pred CchhHHHHHHH-hhhcCCcc---cCCCCCcc-ccCceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 9 RRTWMDDIKEW-TNIPGNQQ---AGASEKHR-VRGDINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 9 ~~~g~~~iK~a-L~L~GG~~---~~~~~g~~-~Rg~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-.+|.+.+|+. ..+..-.. .....|.. .....|++|.|+||||||++.+.+++..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999988 23322211 11111211 1134599999999999999997666554
No 54
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.80 E-value=0.0013 Score=44.27 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.3
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
.+|+++|+||+|||+|++...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~ 22 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFV 22 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999977554
No 55
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.80 E-value=0.0011 Score=46.30 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.5
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
|..++++++|++|+|||.|++....
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~ 26 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG 26 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC
Confidence 6678999999999999999876543
No 56
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.79 E-value=0.0011 Score=45.55 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=18.1
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
++|+++|+||+|||+|++...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~ 21 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFL 21 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999987553
No 57
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.77 E-value=0.0012 Score=43.28 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
++|+++|+|++|||+|++.....-
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc
Confidence 379999999999999999776443
No 58
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.0014 Score=47.24 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=27.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 61 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQ 61 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCC
Confidence 8899999999999999999988764 5666664
No 59
>PRK14532 adenylate kinase; Provisional
Probab=96.77 E-value=0.0019 Score=45.82 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=23.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEe
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTT 70 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~s 70 (98)
+|+++|.||+|||++.+.+++-..-..+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 799999999999999988887655433333
No 60
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.76 E-value=0.0018 Score=48.10 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=28.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.|. .|+..|.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 65 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMR 65 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecc
Confidence 48999999999999999999999765 5666664
No 61
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.76 E-value=0.0014 Score=47.27 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=25.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC----ceEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP----RAIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p----rsv~~sG~ 72 (98)
-+++|.|+||+|||+|++++.+-+. ..+|++..
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 4899999999999999998876542 35666543
No 62
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.76 E-value=0.0016 Score=46.44 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=27.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.+..+.+. .|+..|..
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 55 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEP 55 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEE
Confidence 37899999999999999999988754 56666653
No 63
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.75 E-value=0.0014 Score=45.35 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=19.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+|+|+|+||+|||+|++....-
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999998877643
No 64
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.0018 Score=46.73 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=26.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.|. .|+..|.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK 62 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCC
Confidence 37899999999999999999988754 4555554
No 65
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.0016 Score=47.64 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=28.6
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
..-.+.|+|++|+|||+||+.++.+.|. .|+..|.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 67 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGT 67 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 3348999999999999999999999865 4666554
No 66
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.74 E-value=0.0017 Score=46.45 Aligned_cols=36 Identities=19% Similarity=0.456 Sum_probs=28.8
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
+|+ .+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 23 ~Ge-~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 61 (206)
T TIGR03608 23 KGK-MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKE 61 (206)
T ss_pred CCc-EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE
Confidence 444 7999999999999999999998764 45666553
No 67
>PRK06893 DNA replication initiation factor; Validated
Probab=96.73 E-value=0.0018 Score=48.25 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=26.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC----CceEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG----PRAIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~----prsv~~sG~ 72 (98)
-.++|.|+||+|||.|++.+++-+ ++.+|++-.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 368999999999999999987653 567777764
No 68
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.73 E-value=0.0014 Score=47.33 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=18.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
||+|-|+||+|||||++.+.+..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 79999999999999988766554
No 69
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.72 E-value=0.0012 Score=44.76 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=19.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
++|+++|+|++|||+|++....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~ 22 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVN 22 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999987653
No 70
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.72 E-value=0.0018 Score=47.32 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=28.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~ 73 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQP 73 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEE
Confidence 48999999999999999999998754 46666653
No 71
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.72 E-value=0.0015 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.7
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
++.|+++|++++|||+|++....-
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999877654
No 72
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.72 E-value=0.0017 Score=47.09 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=28.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 68 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKD 68 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 48999999999999999999988754 56666653
No 73
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.71 E-value=0.0014 Score=44.47 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=19.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
++|+++|+||+|||+|++....-
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999998876643
No 74
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0019 Score=47.11 Aligned_cols=35 Identities=20% Similarity=0.446 Sum_probs=28.5
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
+|+ .+.|+|++|+|||+||+.++.+.|. .|++.|.
T Consensus 28 ~G~-~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 65 (229)
T cd03254 28 PGE-TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGI 65 (229)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 444 6999999999999999999988764 5666664
No 75
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.70 E-value=0.0012 Score=44.80 Aligned_cols=22 Identities=27% Similarity=0.532 Sum_probs=19.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
+|+++|++|+|||+|++.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 5899999999999999987654
No 76
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.70 E-value=0.0013 Score=45.02 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.8
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+.++++|++|+|||+|++.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 578999999999999999988765
No 77
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.70 E-value=0.0019 Score=46.77 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=27.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 65 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYS 65 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe
Confidence 37999999999999999999998764 55555543
No 78
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.69 E-value=0.0018 Score=46.85 Aligned_cols=32 Identities=41% Similarity=0.524 Sum_probs=26.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 65 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQ 65 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 7899999999999999999998764 4555554
No 79
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.69 E-value=0.0018 Score=47.23 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=28.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 63 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQD 63 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe
Confidence 37899999999999999999998764 56666653
No 80
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.69 E-value=0.0017 Score=47.57 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=28.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.|. .|+..|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 63 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGED 63 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEE
Confidence 37899999999999999999998764 56666653
No 81
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.0019 Score=47.50 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=27.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 62 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGE 62 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 37899999999999999999998764 5666664
No 82
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.66 E-value=0.0024 Score=45.84 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=27.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+|++.++.+.+. .|+..|.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNC 62 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCc
Confidence 48899999999999999999998764 5666664
No 83
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.66 E-value=0.0014 Score=45.29 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=16.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-++++.|+||+|||+||+.+...+
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999554443
No 84
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.66 E-value=0.0022 Score=46.21 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=28.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.|. .|+..|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 63 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS 63 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCc
Confidence 48899999999999999999988764 56666653
No 85
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.66 E-value=0.0021 Score=47.08 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=28.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.|. .|+..|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~ 64 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQD 64 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEE
Confidence 38999999999999999999998764 56666653
No 86
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.65 E-value=0.0015 Score=43.86 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
++|+++|+|++|||+|++....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999987764
No 87
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.65 E-value=0.0021 Score=46.60 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=27.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 68 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQS 68 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 7899999999999999999988764 56666643
No 88
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.65 E-value=0.0021 Score=46.26 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=27.4
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 62 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK 62 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 348999999999999999999998754 4555554
No 89
>PRK14530 adenylate kinase; Provisional
Probab=96.64 E-value=0.0025 Score=46.58 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCce
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRA 66 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prs 66 (98)
+|+|+|.||+|||++.+.+++...-.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~ 30 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVE 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 79999999999999999888776543
No 90
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.64 E-value=0.0017 Score=46.87 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=28.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
+|+ ++.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 25 ~Ge-~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~ 62 (213)
T cd03301 25 DGE-FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGR 62 (213)
T ss_pred CCc-EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 444 7999999999999999999998754 4565554
No 91
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.64 E-value=0.0016 Score=44.17 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=19.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
++|+++|++|+|||+|+.....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999987753
No 92
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.0021 Score=47.05 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=27.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 64 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTD 64 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEe
Confidence 37899999999999999999988754 56666653
No 93
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.63 E-value=0.0019 Score=44.41 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=20.7
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|+++|+|++|||+|++....-
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 378999999999999998877644
No 94
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.63 E-value=0.0022 Score=47.15 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=28.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 72 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQP 72 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 37899999999999999999998754 56666653
No 95
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.62 E-value=0.0026 Score=44.94 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=27.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~ 64 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGA 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE
Confidence 7899999999999999999998764 5666664
No 96
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.61 E-value=0.0023 Score=44.32 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=25.0
Q ss_pred EEeeCCCChhhHHHHHHHHHhCCceEEEeecc
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQG 73 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~prsv~~sG~~ 73 (98)
|+++|.||+|||++.+.+++... .+++++-.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~-~~~v~~D~ 31 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-AKFIEGDD 31 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC-CeEEeCcc
Confidence 57899999999999999888765 46666643
No 97
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.61 E-value=0.0026 Score=46.35 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=27.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.|. .|+..|.
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 76 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK 76 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCC
Confidence 48999999999999999999998764 5666664
No 98
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0024 Score=46.19 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=27.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 63 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRD 63 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 37999999999999999999998754 46666653
No 99
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.60 E-value=0.002 Score=44.47 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.8
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..+|+++|+|++|||+|++....-
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999987643
No 100
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.60 E-value=0.0026 Score=45.25 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=27.6
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.-.++|+|++|+|||+|++.++.+.+. .|+..|.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~ 61 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 348999999999999999999998764 4555554
No 101
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.60 E-value=0.0024 Score=46.88 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=27.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 64 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGH 64 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCe
Confidence 38999999999999999999988764 5666664
No 102
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.60 E-value=0.0017 Score=46.84 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=22.7
Q ss_pred cCceEEEeeCCCChhhHHHH-HHHHHhCC
Q psy9645 37 RGDINVLLCGDPGTAKSQFL-KYMEKIGP 64 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL-~~~~~l~p 64 (98)
-..++++++|++|+|||+|+ +++....+
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~ 35 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFE 35 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCC
Confidence 34579999999999999999 57766554
No 103
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.0018 Score=51.29 Aligned_cols=27 Identities=26% Similarity=0.510 Sum_probs=23.5
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.+..|+|++|+|++||+++||-++++.
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHh
Confidence 355689999999999999999998874
No 104
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.59 E-value=0.0015 Score=44.43 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
+|.++|+|++|||+|++.+...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998754
No 105
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.59 E-value=0.0021 Score=49.79 Aligned_cols=36 Identities=25% Similarity=0.535 Sum_probs=29.2
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.+|+ -+.+||++|+|||||||.+..|-+. .|++.|.
T Consensus 26 ~~Ge-vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~ 64 (240)
T COG1126 26 EKGE-VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGE 64 (240)
T ss_pred cCCC-EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCE
Confidence 4554 7899999999999999999887654 6777775
No 106
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=96.59 E-value=0.0013 Score=44.20 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
+|+++|+|++|||+|++....-
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~ 22 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPE 22 (162)
T ss_pred CEEEECCCCCCHHHHHHHHccc
Confidence 5899999999999999877654
No 107
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.59 E-value=0.0049 Score=46.41 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=28.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 64 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKP 64 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 37999999999999999999998754 56666653
No 108
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0025 Score=46.41 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=27.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 67 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEP 67 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 37999999999999999999998754 45555543
No 109
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.58 E-value=0.0036 Score=51.23 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=37.5
Q ss_pred CchhHHHHHHHhhhc-----CCcccCCCC-CccccCceEEEeeCCCChhhHHHHHHHHHhCCceE
Q psy9645 9 RRTWMDDIKEWTNIP-----GNQQAGASE-KHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAI 67 (98)
Q Consensus 9 ~~~g~~~iK~aL~L~-----GG~~~~~~~-g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv 67 (98)
-.||.+..|++|+.. -.......+ ........|+||+|+||||||.|.+.+++......
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 468999999983221 111110000 01223456999999999999999999987765433
No 110
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.58 E-value=0.0019 Score=46.47 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=27.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGL 62 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 7899999999999999999998764 4666554
No 111
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.58 E-value=0.0024 Score=41.99 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=17.9
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..-++++.|+||+|||.+++...+-
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH
Confidence 3458999999999999998877665
No 112
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.58 E-value=0.002 Score=46.46 Aligned_cols=33 Identities=36% Similarity=0.402 Sum_probs=27.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 63 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQ 63 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 38899999999999999999998754 4555554
No 113
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.57 E-value=0.0024 Score=46.14 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=27.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 61 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCc
Confidence 37899999999999999999998754 4555554
No 114
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0025 Score=46.56 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=27.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.|. .|+..|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 64 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGH 64 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCE
Confidence 47999999999999999999988764 5555554
No 115
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.57 E-value=0.0029 Score=46.15 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=27.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC-----Cc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG-----PR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~-----pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+. +. .|+..|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 67 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGK 67 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCE
Confidence 488999999999999999999987 43 4555554
No 116
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.57 E-value=0.0021 Score=43.67 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=19.2
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
++|+++|+|++|||+|++...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~ 24 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFT 24 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 689999999999999988775
No 117
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.57 E-value=0.0024 Score=46.87 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=28.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 62 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD 62 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCee
Confidence 48899999999999999999998764 56666653
No 118
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.56 E-value=0.0021 Score=45.13 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.0
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
-++|+|.||+|||+|++.++...+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999988653
No 119
>PRK13947 shikimate kinase; Provisional
Probab=96.56 E-value=0.0028 Score=44.00 Aligned_cols=31 Identities=26% Similarity=0.235 Sum_probs=25.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
||+|+|.||+|||++.+.+++.+...++-+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 7999999999999999998877666555433
No 120
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.56 E-value=0.0027 Score=47.88 Aligned_cols=35 Identities=29% Similarity=0.304 Sum_probs=29.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
-.+.|+|++|+|||+|++.++.+.+. .|++.|...
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~ 73 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI 73 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 48899999999999999999998754 677777643
No 121
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.0027 Score=45.79 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=27.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~ 60 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGV 60 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 48999999999999999999998765 5666664
No 122
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.56 E-value=0.002 Score=43.57 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
++|+++|+|++|||+|++....-
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999877543
No 123
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.55 E-value=0.0024 Score=45.92 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=24.0
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.-+++++|.+|+|||+|++.+..+.|.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 348999999999999999999988764
No 124
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.55 E-value=0.003 Score=45.92 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=29.1
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
++..-.+.|+|++|+|||+||+.++.+.+. .|++.|.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 63 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNK 63 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCc
Confidence 333348999999999999999999988643 5666665
No 125
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0026 Score=46.90 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=27.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 65 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGED 65 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 37899999999999999999998764 46666643
No 126
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.55 E-value=0.0019 Score=43.48 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
++|+++|++++|||+|++....
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~ 22 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVK 22 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999987664
No 127
>PRK10908 cell division protein FtsE; Provisional
Probab=96.55 E-value=0.0027 Score=46.27 Aligned_cols=33 Identities=30% Similarity=0.451 Sum_probs=27.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.|. +|+..|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 64 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGH 64 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 48899999999999999999998764 5666665
No 128
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.004 Score=48.50 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=37.7
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccCCCC--ceEEEEec
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGASAVG--LTAYVGKH 86 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss~~G--LTasv~r~ 86 (98)
.+|+ -+.|+|++|.|||||+|.+..+.++ .|++.|+..+..- +..+.+-.
T Consensus 28 ~~G~-~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 28 EKGE-ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred cCCc-EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 3443 6789999999999999999996654 7888888665553 66665554
No 129
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.55 E-value=0.0025 Score=47.31 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=28.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.|. .|+..|..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 68 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQH 68 (255)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEE
Confidence 47999999999999999999998764 56666643
No 130
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.55 E-value=0.0025 Score=48.27 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=29.0
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
+|+ .+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 32 ~Ge-~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~ 70 (280)
T PRK13649 32 DGS-YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTL 70 (280)
T ss_pred CCc-EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 443 6899999999999999999998754 56666653
No 131
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.54 E-value=0.003 Score=52.66 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=38.4
Q ss_pred CCCchhHHHHHHH--hhhcCCcccC-CCCCcc-ccCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 7 RQRRTWMDDIKEW--TNIPGNQQAG-ASEKHR-VRGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 7 ~~~~~g~~~iK~a--L~L~GG~~~~-~~~g~~-~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.+..+|.+..|++ .++.....+. ..++.+ ....-|+||+|.||+|||+|.+.++++..-
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568899999999 4443321111 111111 001259999999999999999999988654
No 132
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.54 E-value=0.0019 Score=41.98 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.1
Q ss_pred EEeeCCCChhhHHHHHHHHHh
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l 62 (98)
|+|.|-||+|||++++++++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988776
No 133
>PRK08118 topology modulation protein; Reviewed
Probab=96.54 E-value=0.0027 Score=45.40 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.|+++|.||+|||||.+.+++...-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999988876543
No 134
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.54 E-value=0.0021 Score=42.53 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
++|+++|+||+|||+|++.+...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999987654
No 135
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.54 E-value=0.0031 Score=43.20 Aligned_cols=29 Identities=24% Similarity=0.215 Sum_probs=23.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.+|+|+|.||+|||++.+.+++.+.-.++
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~~~~ 33 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGYDFI 33 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 48999999999999999988877654333
No 136
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=96.54 E-value=0.0024 Score=43.46 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=18.1
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
+.|+++|+||+|||+|++...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~ 22 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFV 22 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999976544
No 137
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=96.53 E-value=0.0025 Score=43.26 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=19.6
Q ss_pred ceEEEeeCCCChhhHHHH-HHHHHhC
Q psy9645 39 DINVLLCGDPGTAKSQFL-KYMEKIG 63 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL-~~~~~l~ 63 (98)
+++|+++|+||+|||+|+ +++..-+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~ 26 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTF 26 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCC
Confidence 368999999999999998 4544433
No 138
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.52 E-value=0.0026 Score=42.83 Aligned_cols=22 Identities=18% Similarity=0.307 Sum_probs=19.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
++|+++|+|++|||+|++....
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~ 24 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQ 24 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 6899999999999999876543
No 139
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.52 E-value=0.0029 Score=45.41 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=27.7
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.-.+.|+|++|+|||+|++.++.+.+. .|+..|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGT 62 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCE
Confidence 348999999999999999999998754 4555554
No 140
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.52 E-value=0.0026 Score=48.06 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=27.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 69 (269)
T PRK11831 34 KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGE 69 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 48899999999999999999998754 5666664
No 141
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=96.52 E-value=0.0026 Score=43.64 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
++|+++|++|+|||+|++....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~ 23 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK 23 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999876543
No 142
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.52 E-value=0.0017 Score=43.07 Aligned_cols=19 Identities=16% Similarity=0.417 Sum_probs=18.1
Q ss_pred EEeeCCCChhhHHHHHHHH
Q psy9645 42 VLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~ 60 (98)
|+++|++|+|||+|++.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 7899999999999999988
No 143
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.51 E-value=0.0029 Score=47.09 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=28.4
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc--------eEEEeecc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR--------AIFTTGQG 73 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr--------sv~~sG~~ 73 (98)
.-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 75 (254)
T PRK14273 33 NSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKN 75 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEe
Confidence 348999999999999999999988753 56666653
No 144
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.51 E-value=0.0029 Score=45.88 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=29.7
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
+...-++.|+|++|+|||+|++.++.+.+. .|+..|.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 60 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQ 60 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 333348999999999999999999999765 4666665
No 145
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.51 E-value=0.003 Score=45.65 Aligned_cols=33 Identities=18% Similarity=0.463 Sum_probs=27.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.|. .|++.|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG 62 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 48999999999999999999998764 4555554
No 146
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.51 E-value=0.0038 Score=52.03 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=37.7
Q ss_pred CCchhHHHHHHH--hhhcCCcccC-CCCC--ccccCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 8 QRRTWMDDIKEW--TNIPGNQQAG-ASEK--HRVRGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 8 ~~~~g~~~iK~a--L~L~GG~~~~-~~~g--~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.-.||.++.|++ .++..+..+. ..+. ..++- -||||+|.||+|||++.+.+++...-
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p-~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP-KNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCC-ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 347898889988 4454432111 1110 11111 49999999999999999999988654
No 147
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.51 E-value=0.0027 Score=42.99 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=22.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAI 67 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv 67 (98)
+|+|+|.||+|||++.+.+++...-..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~ 27 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPF 27 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 589999999999999998886654433
No 148
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.51 E-value=0.0023 Score=45.05 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=27.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-++.|+|++|+|||+||+.++.+.|. .|+..|.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~ 62 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGK 62 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 48999999999999999999998765 4555554
No 149
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.50 E-value=0.003 Score=46.62 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=27.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-++.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 64 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN 64 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 37999999999999999999988754 4666664
No 150
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.50 E-value=0.003 Score=46.58 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=27.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 65 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDE 65 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 38899999999999999999998764 5666664
No 151
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.50 E-value=0.0056 Score=37.73 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.6
Q ss_pred EEeeCCCChhhHHHHHHHHHhC
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~ 63 (98)
+.+.|.||+|||++.+..++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999888874
No 152
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=96.50 E-value=0.002 Score=42.99 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=18.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
+|.++|+|++|||+|++....-
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999876543
No 153
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.50 E-value=0.0029 Score=46.49 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=27.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc-------eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR-------AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr-------sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~ 53 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRP 53 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEe
Confidence 37899999999999999999998754 46666643
No 154
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=96.49 E-value=0.0024 Score=43.01 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=18.6
Q ss_pred EEEeeCCCChhhHHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~ 61 (98)
+|+++|+|++|||+|++....
T Consensus 2 ki~liG~~~~GKSsli~~l~~ 22 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMY 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999987653
No 155
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.49 E-value=0.0031 Score=47.91 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=26.0
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc-eEEEeec
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR-AIFTTGQ 72 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr-sv~~sG~ 72 (98)
..++||.|+||||||+|.+++++...+ -+.+++.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~ 55 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGD 55 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 349999999999999999998865443 3445554
No 156
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.49 E-value=0.003 Score=45.75 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=27.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 66 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGT 66 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCE
Confidence 48999999999999999999998764 4666664
No 157
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.0031 Score=46.60 Aligned_cols=36 Identities=25% Similarity=0.560 Sum_probs=28.8
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
+|+ .+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 26 ~Ge-~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 64 (242)
T cd03295 26 KGE-FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGED 64 (242)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeE
Confidence 444 6899999999999999999998764 46666653
No 158
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.0024 Score=46.47 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=27.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 62 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGH 62 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 48999999999999999999998754 4666554
No 159
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=96.48 E-value=0.003 Score=47.68 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=29.2
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
..-.+.|+|++|+|||+||+.++.+.+. .|++.|..
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 76 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHP 76 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEE
Confidence 3347999999999999999999999765 56666653
No 160
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.0033 Score=44.61 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=28.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 63 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGED 63 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 48889999999999999999988765 46666643
No 161
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.48 E-value=0.0023 Score=46.79 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=27.7
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGE 62 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE
Confidence 348999999999999999999988764 5555553
No 162
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.48 E-value=0.0028 Score=47.86 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=28.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 64 (271)
T PRK13638 28 PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKP 64 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEE
Confidence 37999999999999999999998765 56666654
No 163
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.47 E-value=0.0019 Score=42.43 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=19.0
Q ss_pred EEeeCCCChhhHHHHHHHHHh
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l 62 (98)
|+++|++|+|||+|++.....
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999988765
No 164
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.47 E-value=0.003 Score=39.53 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.++|.|++|+|||+||.++.-++
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 59999999999999999887654
No 165
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.47 E-value=0.0032 Score=45.47 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=27.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+|++.++.+.|. .|+..|.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~ 63 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGE 63 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 48999999999999999999998765 4555554
No 166
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.47 E-value=0.0032 Score=46.40 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=28.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 64 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLK 64 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 7999999999999999999988754 57777754
No 167
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.47 E-value=0.0032 Score=46.23 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=27.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.|. .|+..|.
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 65 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGV 65 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCE
Confidence 38999999999999999999998764 4666664
No 168
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.46 E-value=0.0028 Score=45.89 Aligned_cols=37 Identities=30% Similarity=0.347 Sum_probs=29.3
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
++..-.+.|+|++|+|||+||+.++.+.+. .|++.|.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 62 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGR 62 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 333348999999999999999999988764 4666664
No 169
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.46 E-value=0.0033 Score=45.80 Aligned_cols=33 Identities=30% Similarity=0.302 Sum_probs=27.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.|. +|+..|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~ 62 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH 62 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 48899999999999999999988764 5666664
No 170
>PRK03839 putative kinase; Provisional
Probab=96.46 E-value=0.0036 Score=44.19 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=24.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
+|+|+|.||+|||++.+.+++.....++-.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 5899999999999999988877555444333
No 171
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.46 E-value=0.0038 Score=52.73 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=23.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
|+||.|+||||||+|.+.++..+.+
T Consensus 41 hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 41 SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred CEEEECCCChhHHHHHHHHHHHhcc
Confidence 9999999999999999999988765
No 172
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.0033 Score=45.57 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=29.5
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.+.. -.+.|+|++|+|||+||+.+..+.+. .|+..|.
T Consensus 20 ~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 59 (214)
T cd03297 20 DLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT 59 (214)
T ss_pred EEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 3445 68999999999999999999998764 4666664
No 173
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.45 E-value=0.0034 Score=46.21 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=27.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 63 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGH 63 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE
Confidence 48899999999999999999988754 5666664
No 174
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.45 E-value=0.0032 Score=48.03 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=27.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 73 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDY 73 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 7999999999999999999998765 4666664
No 175
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.45 E-value=0.0039 Score=43.48 Aligned_cols=32 Identities=34% Similarity=0.647 Sum_probs=23.8
Q ss_pred EEeeCCCChhhHHH-HHHHHHh---CCceEEEeecc
Q psy9645 42 VLLCGDPGTAKSQF-LKYMEKI---GPRAIFTTGQG 73 (98)
Q Consensus 42 iLliGdpGtGKSql-L~~~~~l---~prsv~~sG~~ 73 (98)
+|+.|+||+|||.| ++++... -.+++|++-..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 68999999999998 4455443 35678887653
No 176
>PF13245 AAA_19: Part of AAA domain
Probab=96.44 E-value=0.0039 Score=39.71 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=22.6
Q ss_pred EEEeeCCCChhhH-HHHHHHHHhC------CceEEEee
Q psy9645 41 NVLLCGDPGTAKS-QFLKYMEKIG------PRAIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKS-qlL~~~~~l~------prsv~~sG 71 (98)
.+++.|.||+||| ++++.+..+. ++.|.+..
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a 49 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLA 49 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 4566999999999 5577777776 55555543
No 177
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.44 E-value=0.0026 Score=45.87 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=27.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 64 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGE 64 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 37899999999999999999998754 4555554
No 178
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.44 E-value=0.0039 Score=47.15 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=26.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
.|+++|.||+|||++.+.+++-.+..++++.
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 5788999999999999998887766677764
No 179
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.44 E-value=0.0027 Score=42.44 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.7
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|+++|+||+|||+|++.+.+-
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 368999999999999999987653
No 180
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.43 E-value=0.0026 Score=42.96 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=19.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
++++++|+|++|||+|++....-
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999877643
No 181
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.43 E-value=0.0033 Score=47.07 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=29.6
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc------eEEEeeccc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR------AIFTTGQGA 74 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr------sv~~sG~~s 74 (98)
+|+ .+.|+|++|+|||+||+.++.+.+. .|+..|...
T Consensus 29 ~Ge-~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 29 HGE-MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTV 71 (262)
T ss_pred CCc-EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEec
Confidence 444 7999999999999999999998752 667777543
No 182
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0028 Score=44.80 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=27.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.|. .++..|.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~ 62 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGK 62 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 38999999999999999999998765 4555554
No 183
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.42 E-value=0.0035 Score=46.43 Aligned_cols=28 Identities=14% Similarity=0.412 Sum_probs=23.7
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
.+|+ ++.|+|++|+|||+||+.++.+.+
T Consensus 27 ~~Ge-~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 27 FKNQ-ITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred cCCC-EEEEECCCCCCHHHHHHHHhcccc
Confidence 3444 799999999999999999998754
No 184
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.42 E-value=0.0037 Score=46.47 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=27.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+ -.|+..|..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~ 72 (252)
T PRK14256 31 SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTD 72 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEE
Confidence 3799999999999999999999863 346666653
No 185
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.42 E-value=0.0029 Score=44.80 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=27.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-++.++|++|+|||+||+.++.+.|. .|+..|.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~ 64 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGV 64 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCE
Confidence 47999999999999999999998765 4555554
No 186
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0036 Score=46.24 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=29.9
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
..-++.|+|++|+|||+|++.++.+.+. .|++.|...
T Consensus 24 ~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~ 63 (235)
T cd03299 24 RGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI 63 (235)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc
Confidence 3348999999999999999999988654 677777543
No 187
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.41 E-value=0.0034 Score=47.51 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=27.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 69 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ 69 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 48999999999999999999988754 4555554
No 188
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.003 Score=44.53 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=28.1
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
..-.+.|+|++|+|||+||+.++.+.|. .++..|.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~ 64 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGV 64 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCE
Confidence 3348899999999999999999999765 4555554
No 189
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=96.41 E-value=0.0044 Score=51.43 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=40.1
Q ss_pred chhHHHHHHHhhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEEEeec
Q psy9645 10 RTWMDDIKEWTNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQ 72 (98)
Q Consensus 10 ~~g~~~iK~aL~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~ 72 (98)
.+|.|.+|+||.|- -+.... -.+||-|+.|+|||+++|.++.|.|.-..+.|-
T Consensus 19 ivGqd~lk~aL~l~-av~P~i---------ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc 71 (423)
T COG1239 19 IVGQDPLKLALGLN-AVDPQI---------GGALIAGEKGTAKSTLARALADLLPEIEVVIGC 71 (423)
T ss_pred hcCchHHHHHHhhh-hccccc---------ceeEEecCCCccHHHHHHHHHHhCCccceecCC
Confidence 46899999995554 222211 167888999999999999999999997766653
No 190
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.41 E-value=0.003 Score=43.33 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+|+++|++++|||+|++....-
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~ 24 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADD 24 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999998877644
No 191
>PRK07261 topology modulation protein; Provisional
Probab=96.41 E-value=0.004 Score=44.50 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.|+++|.||+|||+|.+.+++..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887654
No 192
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.40 E-value=0.003 Score=43.58 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=18.9
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
++|+++|++|+|||+|++...
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~ 25 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYT 25 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 789999999999999987654
No 193
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.40 E-value=0.0033 Score=52.95 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=24.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-|++|+|+||+|||+|++.+..+.|.
T Consensus 211 ~~llliG~~GsGKTtLak~L~gllpp 236 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLLPD 236 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccCCC
Confidence 49999999999999999999999886
No 194
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.40 E-value=0.0031 Score=42.65 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.4
Q ss_pred EEEeeCCCChhhHHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~ 61 (98)
.|+++|+||+|||+|++....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999887654
No 195
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.39 E-value=0.0041 Score=46.58 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=23.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
-++.|+|++|+|||+||+.++.+.+
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 34 KVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4899999999999999999999865
No 196
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.39 E-value=0.0032 Score=42.91 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=19.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.+++++|+||+|||+|++....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~ 24 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFAD 24 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999887653
No 197
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.39 E-value=0.0041 Score=46.47 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=27.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+ -.|++.|..
T Consensus 39 e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~ 80 (259)
T PRK14274 39 EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSN 80 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEE
Confidence 3789999999999999999998764 256666653
No 198
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.39 E-value=0.0044 Score=52.95 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=34.2
Q ss_pred CchhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCce
Q psy9645 9 RRTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRA 66 (98)
Q Consensus 9 ~~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prs 66 (98)
..+||++++.. ..+..+ -|++++|+||+|||++++.+++..|+.
T Consensus 19 ~viG~~~a~~~l~~a~~~~--------------~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 19 QVIGQEEAVEIIKKAAKQK--------------RNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hccCHHHHHHHHHHHHHcC--------------CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 35788888877 222211 199999999999999999999998875
No 199
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.39 E-value=0.0033 Score=45.92 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.0
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+|+|+|.||+||||+.+.+++-.+-
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999988877554
No 200
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.38 E-value=0.0029 Score=44.50 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=23.9
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..+...+|+++|++|+|||+|++.+...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4577789999999999999999987654
No 201
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=96.38 E-value=0.0028 Score=43.63 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=17.1
Q ss_pred eEEEeeCCCChhhHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYM 59 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~ 59 (98)
++|+++|+||+|||+|+...
T Consensus 1 ~ki~vvG~~~~GKTsli~~~ 20 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRF 20 (161)
T ss_pred CEEEEECcCCCCHHHHHHHH
Confidence 37999999999999998543
No 202
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.38 E-value=0.0027 Score=42.27 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.4
Q ss_pred EEEeeCCCChhhHHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~ 61 (98)
+|+++|+||+|||+|++....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999987754
No 203
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.37 E-value=0.0046 Score=50.09 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=30.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGASA 76 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss~ 76 (98)
--+.|+|++||||||+||.++.+-.. .|+..|+..+.
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~ 71 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD 71 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 46789999999999999999988755 57777776555
No 204
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.37 E-value=0.0042 Score=51.11 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAI 67 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv 67 (98)
++||.|+||||||.|++.++..+...+
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPF 116 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 699999999999999999988765443
No 205
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.36 E-value=0.004 Score=47.10 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=28.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 72 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGIT 72 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 48899999999999999999999765 56666654
No 206
>PRK06762 hypothetical protein; Provisional
Probab=96.36 E-value=0.0045 Score=42.97 Aligned_cols=31 Identities=16% Similarity=0.379 Sum_probs=23.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCce-EEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRA-IFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prs-v~~sG 71 (98)
-|++.|.||+|||++.+..++..+.+ ++++.
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~ 35 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ 35 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEecH
Confidence 47889999999999999887766543 34443
No 207
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.36 E-value=0.0033 Score=43.04 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.8
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
++|+++|++|+|||+|++...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~ 23 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFT 23 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999988765
No 208
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.36 E-value=0.003 Score=46.02 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=28.1
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.|+ .+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 36 ~Ge-~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 73 (214)
T PRK13543 36 AGE-ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK 73 (214)
T ss_pred CCC-EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCE
Confidence 444 7999999999999999999998764 4555554
No 209
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.35 E-value=0.0042 Score=45.05 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=27.7
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.-.+.|+|.+|+|||+|++.++.+.+. .|+..|.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 64 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGG 64 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 348899999999999999999998654 4666554
No 210
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.35 E-value=0.0033 Score=45.30 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=27.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 63 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGK 63 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 37899999999999999999998764 4555554
No 211
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=96.35 E-value=0.0025 Score=42.97 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=18.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
+|+++|+||+|||+|++....-
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 5899999999999998877643
No 212
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.34 E-value=0.0041 Score=46.08 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=27.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+ -.|++.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 71 (250)
T PRK14240 30 QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQD 71 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence 3799999999999999999998643 346666653
No 213
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.34 E-value=0.0041 Score=45.19 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=23.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.-|.|+|.+|+|||+|++.+..+++.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999988763
No 214
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.34 E-value=0.0041 Score=46.70 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=27.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~ 64 (258)
T PRK13548 29 EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGR 64 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE
Confidence 37899999999999999999998654 5666664
No 215
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.33 E-value=0.0042 Score=44.83 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=27.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC--Cc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG--PR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~--pr---sv~~sG~~ 73 (98)
-++.|+|.+|+|||+||+.++.+. +. .|+..|..
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~ 74 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEe
Confidence 489999999999999999999987 43 45555553
No 216
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.33 E-value=0.0032 Score=47.02 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=28.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD 69 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcc
Confidence 38999999999999999999998754 56666653
No 217
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.33 E-value=0.004 Score=46.85 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=27.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 73 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQ 73 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 38999999999999999999998754 4666664
No 218
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.33 E-value=0.0045 Score=45.47 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=27.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 43 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS 43 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcc
Confidence 37899999999999999999988653 56666653
No 219
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.33 E-value=0.0042 Score=47.22 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=28.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|.+|+|||+||+.++.+.+. .|+..|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 65 (274)
T PRK13644 29 EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID 65 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 48999999999999999999998764 57777654
No 220
>PRK13949 shikimate kinase; Provisional
Probab=96.33 E-value=0.0049 Score=44.12 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=22.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+|+|+|.||+|||++.+.+++..-.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 7999999999999999998877544
No 221
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.33 E-value=0.0034 Score=45.26 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=24.1
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+.+|||.|++||||+.+.+.+.+.++|
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r 48 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPR 48 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTT
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhc
Confidence 369999999999999999999999886
No 222
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.0047 Score=45.45 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=28.9
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
.-++.|+|++|+|||+||+.++.+.|. .|++.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 63 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKD 63 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 348999999999999999999988764 56666653
No 223
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.31 E-value=0.0038 Score=42.70 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.2
Q ss_pred ceEEEeeCCCChhhHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~ 60 (98)
.++|+++|+|++|||+|++...
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~ 26 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYV 26 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999987654
No 224
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.31 E-value=0.0033 Score=46.73 Aligned_cols=35 Identities=31% Similarity=0.566 Sum_probs=27.8
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
+|+ .+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 25 ~Ge-~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (252)
T TIGR03005 25 AGE-KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGE 62 (252)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 444 7899999999999999999998754 3555554
No 225
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.31 E-value=0.0037 Score=42.68 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.1
Q ss_pred ceEEEeeCCCChhhHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~ 60 (98)
..+|+++|++|+|||+|++...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~ 24 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFK 24 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999988763
No 226
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.31 E-value=0.0041 Score=42.28 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=19.8
Q ss_pred ceEEEeeCCCChhhHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~ 60 (98)
...++++|+||+|||+|++...
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~ 28 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFT 28 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999988775
No 227
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.30 E-value=0.0048 Score=45.80 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=27.6
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
.-.+.|+|++|+|||+||+.++.+.+ -.|+..|..
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 74 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN 74 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEE
Confidence 34799999999999999999998742 256666653
No 228
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.30 E-value=0.0048 Score=47.97 Aligned_cols=58 Identities=19% Similarity=0.131 Sum_probs=36.9
Q ss_pred ccCCCCch----hHHHHHHHh-hhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceE
Q psy9645 4 DRGRQRRT----WMDDIKEWT-NIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAI 67 (98)
Q Consensus 4 ~~~~~~~~----g~~~iK~aL-~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv 67 (98)
++=||+.+ |.+.+++.| .++-..... .+..-|+||.|+||+|||+|++.+++.....+
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKKR------GEALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 34466654 788888772 222111110 01123899999999999999999887765543
No 229
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.30 E-value=0.0037 Score=45.05 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=27.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-++.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 70 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGI 70 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCE
Confidence 48999999999999999999988754 4555554
No 230
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.30 E-value=0.0045 Score=47.22 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=28.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc------eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR------AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr------sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 34 e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 34 SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 48999999999999999999998754 46666654
No 231
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.29 E-value=0.0039 Score=43.52 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=19.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-|+++|.||+|||++++.+++-.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999998777443
No 232
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.29 E-value=0.01 Score=48.78 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=36.1
Q ss_pred CCchhHHHHHHHh--hhc---CCccc---CCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 8 QRRTWMDDIKEWT--NIP---GNQQA---GASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 8 ~~~~g~~~iK~aL--~L~---GG~~~---~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
...||.++.|++| ++. -+... ...+........|+||+|+||+|||++.+.+++...
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 3468999999883 221 11110 000001123346999999999999999999987754
No 233
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.29 E-value=0.0061 Score=45.74 Aligned_cols=32 Identities=28% Similarity=0.604 Sum_probs=27.3
Q ss_pred EEEeeCCCChhhHHH-HHHHHHhCCc---eEEEeec
Q psy9645 41 NVLLCGDPGTAKSQF-LKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSql-L~~~~~l~pr---sv~~sG~ 72 (98)
.+|+.|+||+|||.| ++++.+.+.. ++|++=.
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 899999999999999 7788887766 8887754
No 234
>PLN03108 Rab family protein; Provisional
Probab=96.29 E-value=0.0039 Score=45.33 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.0
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|+++|++|+|||+|++.....
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~ 29 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 479999999999999999887644
No 235
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.29 E-value=0.0071 Score=44.16 Aligned_cols=33 Identities=24% Similarity=0.575 Sum_probs=24.3
Q ss_pred eEEEeeCCCChhhHHH-HHHHHHh----CCceEEEeec
Q psy9645 40 INVLLCGDPGTAKSQF-LKYMEKI----GPRAIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSql-L~~~~~l----~prsv~~sG~ 72 (98)
.-+|+.|+||+|||.| ++++.+- -.+++|++=.
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 4899999999999999 5556433 4678888754
No 236
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.28 E-value=0.0036 Score=43.77 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=23.0
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
..+.-++|.++|++|+|||+|++....
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~ 46 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTN 46 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 344557899999999999999998876
No 237
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=96.28 E-value=0.0036 Score=43.95 Aligned_cols=21 Identities=14% Similarity=0.381 Sum_probs=18.3
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
++|+++|+|++|||+|++...
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~ 21 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYV 21 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999987655
No 238
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.28 E-value=0.0049 Score=44.10 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=22.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
-+.|+|.+|+|||+|++.+....|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 589999999999999999999887
No 239
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.28 E-value=0.0043 Score=42.86 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=19.8
Q ss_pred ceEEEeeCCCChhhHHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.++|+++|+||+|||+|++....
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999887653
No 240
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.27 E-value=0.0048 Score=45.82 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=28.1
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc--------eEEEeec
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR--------AIFTTGQ 72 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr--------sv~~sG~ 72 (98)
.|+ .+.|+|.+|+|||+||+.++.+.+. .|+..|.
T Consensus 29 ~G~-~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 71 (251)
T PRK14249 29 ERQ-ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNE 71 (251)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCE
Confidence 444 7899999999999999999998764 4565554
No 241
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.27 E-value=0.0057 Score=45.83 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=28.8
Q ss_pred ccCceEEEeeCCCChhhHHH-HHHHHHhC---CceEEEeecc
Q psy9645 36 VRGDINVLLCGDPGTAKSQF-LKYMEKIG---PRAIFTTGQG 73 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSql-L~~~~~l~---prsv~~sG~~ 73 (98)
.+++ -+++.|+||+|||+| ++++..+. .+.+|++...
T Consensus 22 ~~g~-~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~ 62 (230)
T PRK08533 22 PAGS-LILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL 62 (230)
T ss_pred CCCc-EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 3444 899999999999999 68888774 4577887553
No 242
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.27 E-value=0.0048 Score=45.38 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=27.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 67 (237)
T PRK11614 32 EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGK 67 (237)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCE
Confidence 47899999999999999999988754 5555554
No 243
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.27 E-value=0.0036 Score=44.54 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=27.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .+++.|.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGK 62 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 37899999999999999999998764 4666664
No 244
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.27 E-value=0.0038 Score=46.18 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=28.1
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.+|+ .+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 27 ~~Ge-~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 65 (250)
T PRK11264 27 KPGE-VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDI 65 (250)
T ss_pred cCCC-EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence 3444 6899999999999999999988754 4555554
No 245
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.27 E-value=0.0048 Score=45.53 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=28.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|.+|+|||+|++.++.+.+. .|+..|..
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 48 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQ 48 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 38899999999999999999988764 56666653
No 246
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.0037 Score=46.33 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=26.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 65 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGV 65 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 7899999999999999999998754 4555554
No 247
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.26 E-value=0.0049 Score=45.36 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=27.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|.+|+|||+||+.++.+.+. .|+..|.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 64 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGT 64 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCe
Confidence 37899999999999999999988643 5666664
No 248
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.26 E-value=0.0049 Score=44.32 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=23.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-.+.|+|.+|+|||+||+.++.+.+.
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 37899999999999999999998765
No 249
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.26 E-value=0.0049 Score=47.17 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=29.6
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
.|+ .+.|+|++|+|||+||+.++.+.+. .|++.|..
T Consensus 32 ~Ge-~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~ 70 (287)
T PRK13641 32 EGS-FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYH 70 (287)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 444 6899999999999999999999765 57777753
No 250
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.0049 Score=46.67 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=28.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.|. .|+..|..
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~ 87 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQD 87 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE
Confidence 48899999999999999999999765 46666653
No 251
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.25 E-value=0.0056 Score=45.30 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=27.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+ -.++..|.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (249)
T PRK14253 30 QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGE 70 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence 4899999999999999999998865 24666664
No 252
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.25 E-value=0.0039 Score=43.31 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=18.5
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
++|+++|++|+|||+|++...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~ 21 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHL 21 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999987664
No 253
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.25 E-value=0.0051 Score=50.08 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=29.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
-.+.|+|++|+|||+||+.+..+.+. .|+..|...
T Consensus 55 ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i 92 (400)
T PRK10070 55 EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDI 92 (400)
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEEC
Confidence 37999999999999999999998765 577777543
No 254
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.25 E-value=0.0039 Score=41.72 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.4
Q ss_pred EEEeeCCCChhhHHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~ 61 (98)
+|.++|+||+|||+|++....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999887654
No 255
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.24 E-value=0.004 Score=45.71 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=27.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 70 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGED 70 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE
Confidence 48899999999999999999988754 56666643
No 256
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.24 E-value=0.0041 Score=45.09 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=26.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-++.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 66 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGV 66 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCE
Confidence 37899999999999999999988655 4555554
No 257
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.24 E-value=0.0052 Score=45.88 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=27.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 32 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 67 (257)
T PRK10619 32 DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQ 67 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 48899999999999999999998764 5666664
No 258
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.24 E-value=0.0038 Score=43.72 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-++|+|.+|+|||+|++.+++..|.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 3789999999999999999987766
No 259
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.23 E-value=0.005 Score=45.33 Aligned_cols=35 Identities=31% Similarity=0.581 Sum_probs=27.8
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
+|+ .+.|+|.+|+|||+|++.++.+.+. .|+..|.
T Consensus 47 ~Ge-~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 84 (224)
T cd03220 47 RGE-RIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR 84 (224)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 444 7999999999999999999988654 4555554
No 260
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.22 E-value=0.0053 Score=48.44 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCce
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRA 66 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prs 66 (98)
++||.|+||||||.|++++++-....
T Consensus 158 gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 69999999999999999998766554
No 261
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.22 E-value=0.0047 Score=46.47 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=27.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.|. .|+..|.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 73 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCE
Confidence 48899999999999999999988653 5666664
No 262
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.22 E-value=0.0041 Score=45.25 Aligned_cols=32 Identities=28% Similarity=0.231 Sum_probs=26.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEee
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTG 71 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG 71 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..+
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~ 69 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRH 69 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEec
Confidence 48999999999999999999988754 566653
No 263
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.21 E-value=0.004 Score=43.18 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=23.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-.+.++|++|+|||+|++.++.+.|.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~ 52 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEP 52 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 48899999999999999999998764
No 264
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.21 E-value=0.0052 Score=47.35 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=27.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+. .|++.|.
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~ 66 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGE 66 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 38999999999999999999998754 5666664
No 265
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.21 E-value=0.0048 Score=46.53 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=24.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.|+ .+.|+|++|+|||+||+.++.+.+.
T Consensus 24 ~Ge-~~~i~G~NGsGKSTLlk~L~G~~~p 51 (246)
T cd03237 24 ESE-VIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 444 7899999999999999999998764
No 266
>PRK02496 adk adenylate kinase; Provisional
Probab=96.21 E-value=0.006 Score=43.20 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=23.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.+++++|.||+|||++.+.+++...-..+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i 30 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHI 30 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 46899999999999999998875443333
No 267
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.21 E-value=0.0056 Score=45.31 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=27.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+ -.|++.|..
T Consensus 31 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 72 (252)
T PRK14272 31 TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQD 72 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEE
Confidence 3789999999999999999998853 346666653
No 268
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.20 E-value=0.0041 Score=46.85 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=23.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-.+.|+|++|+|||+||+.++.+.+.
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~~p 56 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLVAP 56 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48999999999999999999988654
No 269
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.20 E-value=0.006 Score=46.39 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=28.4
Q ss_pred cccCceEEEeeCCCChhhHHH-HHHHHHhC---CceEEEeecc
Q psy9645 35 RVRGDINVLLCGDPGTAKSQF-LKYMEKIG---PRAIFTTGQG 73 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSql-L~~~~~l~---prsv~~sG~~ 73 (98)
-.+| .-+++.|+||+|||+| ++++.+.+ .+++|++-..
T Consensus 33 ip~g-s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 33 IPAY-SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred eECC-cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 3445 4789999999999998 56666543 5788988763
No 270
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.20 E-value=0.0072 Score=46.55 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=25.9
Q ss_pred eEEEeeCCCChhhHHH-HHHHHHhC---------CceEEEeeccc
Q psy9645 40 INVLLCGDPGTAKSQF-LKYMEKIG---------PRAIFTTGQGA 74 (98)
Q Consensus 40 ihiLliGdpGtGKSql-L~~~~~l~---------prsv~~sG~~s 74 (98)
.=+++.|+||+||||| +.++.+.. -+++|++..++
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~ 140 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT 140 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence 4678999999999999 55555532 26788887763
No 271
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.20 E-value=0.0044 Score=42.62 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=18.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
++++++|++|+|||+|++....
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~ 22 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVS 22 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999886543
No 272
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.19 E-value=0.0042 Score=43.33 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=18.4
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
++|+++|++++|||+|++...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~ 21 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYS 21 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 479999999999999987665
No 273
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=96.19 E-value=0.0053 Score=45.82 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=27.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.|. .|+..|.
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 63 (256)
T TIGR03873 28 SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGV 63 (256)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCE
Confidence 48899999999999999999998764 4666664
No 274
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.19 E-value=0.0055 Score=46.98 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=28.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|++.|..
T Consensus 33 e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (288)
T PRK13643 33 SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIV 69 (288)
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 38999999999999999999998755 67776654
No 275
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.19 E-value=0.0038 Score=45.84 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=23.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-.+.|+|++|+|||+||+.++.+.|.
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~~~ 39 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDAP 39 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccC
Confidence 47889999999999999999998754
No 276
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.19 E-value=0.0066 Score=43.40 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
+|+|+|.+|+|||++.+.+++.....++
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l~~~~v 33 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEE
Confidence 7999999999999999999877654443
No 277
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.19 E-value=0.0057 Score=45.35 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=26.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
.+.|+|++|+|||+||+.++.+.+ -.|++.|..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 73 (252)
T PRK14255 33 ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQN 73 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEE
Confidence 799999999999999999998743 346666653
No 278
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.0044 Score=46.00 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=28.3
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc--------eEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR--------AIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr--------sv~~sG~~ 73 (98)
+|+ .+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 29 ~Ge-~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~ 72 (253)
T PRK14267 29 QNG-VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRN 72 (253)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEE
Confidence 444 7899999999999999999988653 46666653
No 279
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.0057 Score=46.42 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=30.1
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
++..-.+.|+|++|+|||+|++.++.+.|. .|+..|..
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~ 65 (275)
T PRK13639 25 AEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEP 65 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEE
Confidence 333348999999999999999999998765 56666653
No 280
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.005 Score=46.34 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=27.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.|. .|+..|.
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 69 (265)
T PRK10253 34 HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE 69 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCE
Confidence 38899999999999999999998764 5666664
No 281
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.17 E-value=0.0055 Score=46.64 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=28.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|.+|+|||+||+.++.+.+. .|++.|..
T Consensus 37 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~ 73 (280)
T PRK13633 37 EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD 73 (280)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe
Confidence 37999999999999999999998764 57776654
No 282
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.17 E-value=0.0055 Score=47.17 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=29.0
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
+|+ .+.|+|++|+|||+||+.++.+.+. .|++.|..
T Consensus 18 ~Ge-~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~ 56 (302)
T TIGR01188 18 EGE-VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYD 56 (302)
T ss_pred CCc-EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 443 7899999999999999999998764 56666653
No 283
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.16 E-value=0.0041 Score=44.47 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.2
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
++|+++|+||+|||+|++...
T Consensus 1 ~KivivG~~~vGKTsli~~l~ 21 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYV 21 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999988554
No 284
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.16 E-value=0.006 Score=45.88 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=27.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+ -.|+..|..
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 89 (268)
T PRK14248 48 AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN 89 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEE
Confidence 3789999999999999999998642 356666653
No 285
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.16 E-value=0.006 Score=46.49 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=22.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
.+.|+|++|+|||+||+.++.+.+
T Consensus 49 ~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 49 VTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 789999999999999999998865
No 286
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.16 E-value=0.0059 Score=46.53 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=28.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|.+|+|||+|++.++.+.+. .|++.|..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 70 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDL 70 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 48999999999999999999998754 56666653
No 287
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.16 E-value=0.0061 Score=49.42 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=29.4
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.+|+ .+.|+|.+|+|||+||+.+..+.+. .|++.|.
T Consensus 48 ~~Ge-i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~ 86 (382)
T TIGR03415 48 EEGE-ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDG 86 (382)
T ss_pred cCCC-EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCE
Confidence 3443 6899999999999999999998765 6777764
No 288
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.15 E-value=0.0046 Score=46.17 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=23.1
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
..-.+.|+|++|+|||+||+.++.+.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 33489999999999999999999886
No 289
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.15 E-value=0.006 Score=46.38 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=28.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-++.|+|.+|+|||+|++.++.+.+. .|+..|..
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 67 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP 67 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 48999999999999999999988764 56666653
No 290
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.15 E-value=0.0065 Score=42.69 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
+|+++|.||+|||++.+.+++-..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999998877643
No 291
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.15 E-value=0.0059 Score=46.60 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=29.9
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
+.--.+.|+|++|+|||+|++.++.+.+. .|+..|..
T Consensus 30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~ 69 (283)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKP 69 (283)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEE
Confidence 33348999999999999999999999764 56666653
No 292
>PRK06620 hypothetical protein; Validated
Probab=96.14 E-value=0.0058 Score=45.49 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=23.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEe
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTT 70 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~s 70 (98)
.++|.|+||+|||+|++.+++... ..|++
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~ 74 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSN-AYIIK 74 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccC-CEEcc
Confidence 699999999999999998877643 34444
No 293
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.14 E-value=0.006 Score=46.57 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=29.7
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
.+|+ .+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 31 ~~Ge-~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~ 70 (279)
T PRK13635 31 YEGE-WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMV 70 (279)
T ss_pred cCCC-EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 3444 6899999999999999999998765 56666654
No 294
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.14 E-value=0.0059 Score=45.39 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=26.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+ -.|++.|.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 73 (253)
T PRK14261 33 RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGE 73 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 3799999999999999999997642 34666654
No 295
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.14 E-value=0.0046 Score=44.98 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=25.4
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.++..-.+.|+|++|+|||+||+.++.+.+.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 3333347899999999999999999998765
No 296
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.14 E-value=0.0052 Score=40.92 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=18.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
+|+++|++|+|||+|++.....
T Consensus 2 ki~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999998766643
No 297
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.14 E-value=0.0049 Score=45.69 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=27.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+ -.|++.|..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~ 72 (251)
T PRK14251 31 ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN 72 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEE
Confidence 3799999999999999999998863 246666653
No 298
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=96.13 E-value=0.0052 Score=43.28 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.5
Q ss_pred ceEEEeeCCCChhhHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~ 60 (98)
.++++++|++|+|||.|++...
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~ 22 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYT 22 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHh
Confidence 3789999999999999976443
No 299
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.0062 Score=46.29 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=30.5
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
.+|+ .+.|+|++|+|||+|++.++.+.|. .|++.|...
T Consensus 31 ~~Ge-~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i 71 (277)
T PRK13642 31 TKGE-WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL 71 (277)
T ss_pred cCCC-EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEC
Confidence 4455 6999999999999999999988765 577766543
No 300
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.0058 Score=48.72 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=28.0
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
.+.|+|++|+|||+|||.++.+.+. .|+..|..
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~ 67 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRV 67 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEE
Confidence 6889999999999999999999765 66666653
No 301
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.13 E-value=0.0047 Score=46.84 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-.+.|+|++|+|||+||+.++.+.+.
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~~p 64 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLETP 64 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 37999999999999999999998754
No 302
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.0065 Score=46.44 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=29.7
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
+..-.+.|+|++|+|||+||+.++.+.+. .|++.|..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~ 70 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDIT 70 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 33348999999999999999999998765 56666653
No 303
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.13 E-value=0.0053 Score=45.38 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
.++++|+||+|||++++.+.+..+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 689999999999999998887655
No 304
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.13 E-value=0.0059 Score=46.02 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=26.9
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEee
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTG 71 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG 71 (98)
..-++.|+|++|+|||+||+.++.+.+. .|++.|
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G 71 (257)
T PRK14246 35 NNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcC
Confidence 3348999999999999999999988653 245555
No 305
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.12 E-value=0.0056 Score=44.79 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=28.1
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCC---c---eEEEeec
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGP---R---AIFTTGQ 72 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~p---r---sv~~sG~ 72 (98)
+-.-.+.|+|++|+|||+||+.++.+.+ . .|+..|.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~ 72 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ 72 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCE
Confidence 3334799999999999999999998876 2 3555554
No 306
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.12 E-value=0.0049 Score=40.57 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..|.++|.||+|||+|++.+...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999987653
No 307
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.11 E-value=0.0066 Score=45.49 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=27.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
++.|+|.+|+|||+||+.++.+.|. .|+..|.
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~ 83 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGI 83 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCE
Confidence 8999999999999999999998764 5666554
No 308
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.11 E-value=0.0074 Score=42.32 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=21.9
Q ss_pred EEeeCCCChhhHHHHHHHHHhCCceEEEe
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIGPRAIFTT 70 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~prsv~~s 70 (98)
|+++|.||+|||++.+.+++-.. .++++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~-~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG-FTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC-CeEEE
Confidence 68999999999999888776544 34444
No 309
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0054 Score=46.29 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=27.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+ -.|+..|..
T Consensus 46 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~ 87 (267)
T PRK14235 46 TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED 87 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE
Confidence 3789999999999999999998864 256666653
No 310
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.11 E-value=0.0074 Score=41.14 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=22.7
Q ss_pred EEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
++++|.||+|||++.+.+++... ..++++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~-~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG-APFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC-CEEEeC
Confidence 68899999999999998887643 345544
No 311
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=96.11 E-value=0.0068 Score=44.19 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=27.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|.+|+|||+|++.++.+.|. .|+..|.
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~ 67 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQ 67 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 48999999999999999999988765 4666665
No 312
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.10 E-value=0.0077 Score=46.52 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=24.9
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCceEEE
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFT 69 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~ 69 (98)
....++||+|++|+|||.+++..-+-.+...|.
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~ 63 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYL 63 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccccc
Confidence 345699999999999999998766545554443
No 313
>PRK00625 shikimate kinase; Provisional
Probab=96.10 E-value=0.0072 Score=43.81 Aligned_cols=28 Identities=32% Similarity=0.578 Sum_probs=23.0
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
+|+|+|-||+|||++.+.+++..-..++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~i 29 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFF 29 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999988776544333
No 314
>PRK13695 putative NTPase; Provisional
Probab=96.10 E-value=0.0056 Score=43.19 Aligned_cols=22 Identities=18% Similarity=0.504 Sum_probs=19.0
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
+++|+|+||+|||+|++.+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999986543
No 315
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.09 E-value=0.0066 Score=46.53 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=29.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
.+.|+|.+|+|||+||+.++.+.+. .|++.|...
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 71 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI 71 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEEC
Confidence 8999999999999999999998765 677777543
No 316
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.09 E-value=0.0044 Score=42.40 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
+|.++|++|+|||+|++.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~ 22 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYV 22 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHh
Confidence 4889999999999999988765
No 317
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.09 E-value=0.0044 Score=45.47 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=28.6
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhC---C--ceEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIG---P--RAIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~---p--rsv~~sG~~ 73 (98)
+.--.+.|+|++|+|||+||+.++.+. | -.|+..|..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~ 65 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQD 65 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEe
Confidence 333489999999999999999999984 2 256666653
No 318
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.09 E-value=0.0054 Score=49.88 Aligned_cols=52 Identities=17% Similarity=0.123 Sum_probs=33.0
Q ss_pred CchhHHHHHHH-hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 9 RRTWMDDIKEW-TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 9 ~~~g~~~iK~a-L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
..+|+++.+.. +.-+--.. .|...+.. =++|+|+||+|||+|.+.+++.+.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a----~g~~~~r~-il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA----QGLEERKQ-ILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH----hcCCCCCc-EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35777777766 22111100 11122222 3899999999999999999887766
No 319
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.09 E-value=0.0049 Score=47.97 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=27.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+|++.++.+.|+ .|++.|.
T Consensus 34 e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~ 69 (305)
T PRK13651 34 EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFK 69 (305)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEece
Confidence 38999999999999999999999765 5555543
No 320
>PRK14526 adenylate kinase; Provisional
Probab=96.09 E-value=0.0074 Score=45.02 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=23.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
+++|+|.||+|||++.+.+++...-..+.+|
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G 32 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTG 32 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecC
Confidence 6899999999999999998866444333334
No 321
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.08 E-value=0.0066 Score=46.58 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=28.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 70 (290)
T PRK13634 34 SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERV 70 (290)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 48999999999999999999998765 56666653
No 322
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.08 E-value=0.0066 Score=50.15 Aligned_cols=40 Identities=28% Similarity=0.547 Sum_probs=29.1
Q ss_pred ccccCceEEEeeCCCChhhHHHHH-HHHHhCC---ceEEEeeccc
Q psy9645 34 HRVRGDINVLLCGDPGTAKSQFLK-YMEKIGP---RAIFTTGQGA 74 (98)
Q Consensus 34 ~~~Rg~ihiLliGdpGtGKSqlL~-~~~~l~p---rsv~~sG~~s 74 (98)
.-.+|. -+|+.|+||+|||+|+. ++.+++. +.+|+++..+
T Consensus 90 Gi~~Gs-vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 90 GIVPGS-LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES 133 (454)
T ss_pred CccCCe-EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC
Confidence 345554 67899999999999955 4455654 4789998644
No 323
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.08 E-value=0.0053 Score=45.48 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
-.+.|+|++|+|||+||+.++.+.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 28 QVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 3789999999999999999998874
No 324
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.0073 Score=47.32 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=26.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
+|-|||++|.|||+|||.+..+.+. +|+..|.
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~ 66 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGV 66 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCcceEEeccc
Confidence 8999999999999999999988765 4454443
No 325
>PRK06217 hypothetical protein; Validated
Probab=96.08 E-value=0.0081 Score=42.84 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=22.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.+|+|+|-||+|||+|.+.+++....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36999999999999999988877654
No 326
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.08 E-value=0.0052 Score=45.52 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=28.9
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
++..-.+.|+|.+|+|||+||+.++.+.+. .|+..|.
T Consensus 44 i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~ 83 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL 83 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE
Confidence 334458999999999999999999988654 5555554
No 327
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.07 E-value=0.0049 Score=49.02 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=25.6
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+...||+++|.+|+|||+||+++....|.
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 45569999999999999999999888775
No 328
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.07 E-value=0.0053 Score=43.96 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=20.4
Q ss_pred EEeeCCCChhhHHHHHHHHHhC
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~ 63 (98)
|.|+|.+|+|||+|++.+..+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999886
No 329
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.07 E-value=0.0065 Score=46.33 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=29.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGAS 75 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss 75 (98)
-.++++|++|+|||||++....+.++ .|++.|...+
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~ 69 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTS 69 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeecc
Confidence 38999999999999999999999876 4566665433
No 330
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.0065 Score=47.94 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=28.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|++.|..
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~ 68 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQD 68 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE
Confidence 37889999999999999999998764 56666654
No 331
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.07 E-value=0.0049 Score=49.44 Aligned_cols=30 Identities=33% Similarity=0.598 Sum_probs=26.0
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
++...|||++|.+|+|||+||+.+....|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCC
Confidence 455569999999999999999999887765
No 332
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.07 E-value=0.0059 Score=49.11 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=23.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCce
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRA 66 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prs 66 (98)
-++||.|+||||||.+.+++++-....
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHhCCC
Confidence 479999999999999999998765543
No 333
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0054 Score=45.45 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=27.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+ -.|+..|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 71 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQD 71 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEE
Confidence 3789999999999999999998864 246666653
No 334
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=96.06 E-value=0.0072 Score=45.53 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=26.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+ -.|+..|.
T Consensus 37 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 77 (264)
T PRK14243 37 QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGK 77 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCE
Confidence 4899999999999999999997642 35666664
No 335
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=96.06 E-value=0.0077 Score=45.62 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=27.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+ -.|+..|.
T Consensus 51 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 91 (271)
T PRK14238 51 EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ 91 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCE
Confidence 4889999999999999999999864 35666664
No 336
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.06 E-value=0.0066 Score=48.38 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=28.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
-.+.|+|++|+|||+|||.++.+.+. .|+..|...
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i 70 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDV 70 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEEC
Confidence 48999999999999999999999765 566666543
No 337
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.06 E-value=0.007 Score=44.77 Aligned_cols=36 Identities=25% Similarity=0.517 Sum_probs=28.0
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhC---C-----ceEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIG---P-----RAIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~---p-----rsv~~sG~~ 73 (98)
+|+ .+.|+|++|+|||+||+.++.+. | -.|+..|..
T Consensus 30 ~Ge-~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~ 73 (252)
T PRK14239 30 PNE-ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHN 73 (252)
T ss_pred CCc-EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEE
Confidence 444 69999999999999999998763 3 356666653
No 338
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=96.05 E-value=0.0049 Score=42.07 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=16.3
Q ss_pred EEEeeCCCChhhHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYM 59 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~ 59 (98)
+|+++|+||+|||+|+...
T Consensus 1 ki~vvG~~~~GKtsli~~~ 19 (165)
T cd04146 1 KIAVLGASGVGKSALVVRF 19 (165)
T ss_pred CEEEECCCCCcHHHHHHHH
Confidence 4899999999999998544
No 339
>PLN03025 replication factor C subunit; Provisional
Probab=96.05 E-value=0.0053 Score=47.63 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
|+||.|+||+|||++++.+++-.
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999877653
No 340
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.05 E-value=0.0052 Score=45.82 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=26.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.+.|+|.+|+|||+||+.++.+.+. .|+..|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 64 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK 64 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCE
Confidence 7899999999999999999988654 4555554
No 341
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=96.05 E-value=0.0076 Score=44.57 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=27.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+|++.++.+.+. .|++.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~ 63 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQD 63 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 48899999999999999999988654 45555543
No 342
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=96.04 E-value=0.0055 Score=45.77 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=27.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc-------eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR-------AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr-------sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~ 70 (254)
T PRK10418 30 RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKP 70 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCee
Confidence 38999999999999999999988653 46666653
No 343
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.0083 Score=45.05 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=27.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
-.+.|+|.+|+|||+||+.++.+.+ -.|+..|..
T Consensus 43 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~ 84 (265)
T PRK14252 43 QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDN 84 (265)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcc
Confidence 3889999999999999999998753 156666643
No 344
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.04 E-value=0.012 Score=42.55 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=23.2
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
....|.|.|.+|+|||+|++.+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 345
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.04 E-value=0.0061 Score=45.59 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=24.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC----ceEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP----RAIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p----rsv~~sG~ 72 (98)
+++|.|+||+|||+|++.+++-+. +..|++-.
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 899999999999999997765432 34565554
No 346
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.04 E-value=0.0083 Score=43.82 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=25.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC----CceEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG----PRAIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~----prsv~~sG~ 72 (98)
+++|.|.||+|||.|++.+++-. ...+|++..
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 79999999999999999887654 345666654
No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.0059 Score=42.20 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=27.6
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
...-.++|+|++|+|||+|++.++.+.+. .++..|.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~ 61 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK 61 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCE
Confidence 33348899999999999999999988764 3444443
No 348
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.0049 Score=44.73 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=27.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC---c---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP---R---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p---r---sv~~sG~ 72 (98)
-.+.|+|++|+|||+||+.++.+.+ . .|+..|.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~ 72 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGI 72 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCE
Confidence 4899999999999999999999876 2 4555554
No 349
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.04 E-value=0.0087 Score=43.38 Aligned_cols=37 Identities=22% Similarity=0.472 Sum_probs=26.2
Q ss_pred ccCceEEEeeCCCChhhHHH-HHHHHHhC---CceEEEeecc
Q psy9645 36 VRGDINVLLCGDPGTAKSQF-LKYMEKIG---PRAIFTTGQG 73 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSql-L~~~~~l~---prsv~~sG~~ 73 (98)
.+|. -+++.|+||+|||+| +.++.+.+ .+.+|++...
T Consensus 17 ~~g~-i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 17 ERGT-VTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred cCCe-EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 3443 678999999999999 55555554 3577887643
No 350
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.008 Score=44.64 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=27.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
-.+.|+|.+|+|||+||+.++.+.+ -.|+..|..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~ 72 (251)
T PRK14270 31 KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN 72 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEe
Confidence 3799999999999999999998753 356666653
No 351
>PRK05642 DNA replication initiation factor; Validated
Probab=96.04 E-value=0.01 Score=44.46 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=26.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh----CCceEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI----GPRAIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l----~prsv~~sG~ 72 (98)
-.++|.|++|+|||.|++.+++- -.+.+|++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 36899999999999999988643 2467787764
No 352
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.03 E-value=0.0072 Score=45.92 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=28.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|.+|+|||+|++.++.+.+. .|++.|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 68 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE 68 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEE
Confidence 38999999999999999999998754 57777754
No 353
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.03 E-value=0.0075 Score=48.51 Aligned_cols=38 Identities=21% Similarity=0.458 Sum_probs=31.0
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccC
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGAS 75 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss 75 (98)
+|+ .+.|+|.+|+|||+||+.++.+.+. .|++.|...+
T Consensus 18 ~Ge-i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~ 58 (363)
T TIGR01186 18 KGE-IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIM 58 (363)
T ss_pred CCC-EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 443 7889999999999999999999876 6777776443
No 354
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=96.03 E-value=0.006 Score=43.09 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.1
Q ss_pred ceEEEeeCCCChhhHHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.++|+++|++|+|||+|++....
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~ 25 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKF 25 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999887753
No 355
>PRK14531 adenylate kinase; Provisional
Probab=96.03 E-value=0.0084 Score=42.85 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
+|+++|.||+|||++.+.+++-.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999988776654
No 356
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=96.03 E-value=0.007 Score=47.91 Aligned_cols=33 Identities=15% Similarity=0.382 Sum_probs=27.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 25 i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~ 60 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRT 60 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 7899999999999999999998764 56666643
No 357
>PF13479 AAA_24: AAA domain
Probab=96.03 E-value=0.0072 Score=44.50 Aligned_cols=32 Identities=25% Similarity=0.655 Sum_probs=26.7
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCceEEEeeccc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGA 74 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~~s 74 (98)
.+.+||.|+||+|||+|+..+ |+.+++.-...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g 34 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENG 34 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCC
Confidence 478999999999999997766 88888776544
No 358
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.02 E-value=0.007 Score=48.35 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=28.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|..
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~ 66 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKR 66 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE
Confidence 37999999999999999999998754 56666653
No 359
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=96.02 E-value=0.0058 Score=41.82 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=17.8
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
++|+++|++|+|||+|++...
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~ 21 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999976543
No 360
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.02 E-value=0.006 Score=43.70 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.3
Q ss_pred CceEEEeeCCCChhhHHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
..+.|+++|++|+|||+|++....
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~ 28 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFAD 28 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999876643
No 361
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=96.02 E-value=0.0054 Score=41.62 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=19.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
+|+++|+|++|||+|++....-
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~ 23 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRA 23 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 5899999999999999988764
No 362
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.02 E-value=0.0058 Score=47.57 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=26.0
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
++..-+++++|.+|+|||+||+.+....|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCc
Confidence 445569999999999999999999888775
No 363
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.01 E-value=0.0059 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.673 Sum_probs=21.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
++|.++|++|+|||+|++.+...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~ 24 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGV 24 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998875
No 364
>PTZ00369 Ras-like protein; Provisional
Probab=96.01 E-value=0.0063 Score=43.09 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=18.7
Q ss_pred ceEEEeeCCCChhhHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~ 60 (98)
.+.|+++|+||+|||+|++...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~ 26 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFI 26 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 4789999999999999976544
No 365
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=96.01 E-value=0.0061 Score=42.18 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=20.9
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...+.|+++|++++|||+|++....
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~ 36 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLG 36 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHcc
Confidence 3457899999999999999887654
No 366
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.00 E-value=0.0067 Score=49.69 Aligned_cols=34 Identities=32% Similarity=0.580 Sum_probs=28.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc-----eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR-----AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr-----sv~~sG~~ 73 (98)
-.+.|+|++|+|||+|||.++.+.|. .|+..|..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~ 70 (506)
T PRK13549 32 EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEE 70 (506)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE
Confidence 47899999999999999999998763 56777754
No 367
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.00 E-value=0.0076 Score=47.27 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=28.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.+.|+|++|+|||+|++.++.+.+. .|++.|.
T Consensus 53 e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~ 88 (320)
T PRK13631 53 KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDI 88 (320)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCE
Confidence 48999999999999999999999765 5666654
No 368
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.99 E-value=0.0064 Score=42.90 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-.+.++|.+|+|||+||+.++.+.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 47899999999999999999998764
No 369
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.98 E-value=0.0085 Score=43.07 Aligned_cols=33 Identities=18% Similarity=0.487 Sum_probs=25.0
Q ss_pred EEEeeCCCChhhHHH-HHHHHHh---CCceEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQF-LKYMEKI---GPRAIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSql-L~~~~~l---~prsv~~sG~~ 73 (98)
=+++.|+||+|||+| ++++.+. -.+++|++...
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 689999999999999 4455443 24688888764
No 370
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.98 E-value=0.0065 Score=45.10 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=27.4
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhCC------ceEEEeec
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIGP------RAIFTTGQ 72 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~p------rsv~~sG~ 72 (98)
..-++.|+|++|+|||+||+.++.+.+ -.|+..|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~ 67 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGK 67 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCE
Confidence 334899999999999999999998853 24565554
No 371
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=95.98 E-value=0.0063 Score=41.70 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.5
Q ss_pred EEEeeCCCChhhHHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~ 61 (98)
+|+++|++|+|||+|++...+
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~ 23 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSK 23 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999876654
No 372
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.97 E-value=0.0062 Score=41.12 Aligned_cols=21 Identities=19% Similarity=0.570 Sum_probs=17.5
Q ss_pred EEEeeCCCChhhHHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~ 61 (98)
.|+++||+++|||+|++....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~ 21 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLIN 21 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999865544
No 373
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.97 E-value=0.0079 Score=48.61 Aligned_cols=39 Identities=28% Similarity=0.618 Sum_probs=28.8
Q ss_pred cccCceEEEeeCCCChhhHHHHH-HHHHhCC---ceEEEeeccc
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLK-YMEKIGP---RAIFTTGQGA 74 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~-~~~~l~p---rsv~~sG~~s 74 (98)
-.+|. -+|+.|+||+|||+|+. ++..++. +.+|+++..+
T Consensus 79 i~~Gs-lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs 121 (372)
T cd01121 79 LVPGS-VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES 121 (372)
T ss_pred ccCCe-EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC
Confidence 44554 78999999999999855 5555554 4779988744
No 374
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.96 E-value=0.0099 Score=42.85 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=25.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~sG~ 72 (98)
.+.++|.+|+|||+|++.++.+... +++.|.
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~-~~i~gd 35 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA-KFIDGD 35 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC-EEECCc
Confidence 5789999999999999999987554 566664
No 375
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.96 E-value=0.0068 Score=42.89 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=22.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCce
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRA 66 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prs 66 (98)
-|+|.|.||+|||++.+..++.++..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~ 29 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEP 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 58999999999999999998876653
No 376
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.96 E-value=0.014 Score=48.25 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=30.7
Q ss_pred cccCceEEEeeCCCChhhHHH-HHHHHHhC---CceEEEeeccc
Q psy9645 35 RVRGDINVLLCGDPGTAKSQF-LKYMEKIG---PRAIFTTGQGA 74 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSql-L~~~~~l~---prsv~~sG~~s 74 (98)
-.+|. -+|+.|+||+|||+| ++++.+.+ .+++|++..-+
T Consensus 260 ~~~gs-~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs 302 (484)
T TIGR02655 260 FFKDS-IILATGATGTGKTLLVSKFLENACANKERAILFAYEES 302 (484)
T ss_pred ccCCc-EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 45554 899999999999998 67776654 46899998754
No 377
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=95.95 E-value=0.0049 Score=42.20 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.3
Q ss_pred EEeeCCCChhhHHHHHHHH
Q psy9645 42 VLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~ 60 (98)
|+++|++|+|||+|++...
T Consensus 1 i~i~G~~~vGKTsli~~~~ 19 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYT 19 (174)
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 5899999999999987554
No 378
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=95.95 E-value=0.0078 Score=47.65 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=28.5
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
+|+ .+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 23 ~Ge-~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~ 60 (352)
T PRK11144 23 AQG-ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGR 60 (352)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 444 7899999999999999999998754 4666664
No 379
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.95 E-value=0.0089 Score=49.17 Aligned_cols=39 Identities=31% Similarity=0.612 Sum_probs=28.7
Q ss_pred cccCceEEEeeCCCChhhHHHHH-HHHHhC---CceEEEeeccc
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLK-YMEKIG---PRAIFTTGQGA 74 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~-~~~~l~---prsv~~sG~~s 74 (98)
-.+|. -+|+.|+||+|||+|+. ++..++ .+.+|+++..+
T Consensus 77 i~~Gs-~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 77 LVPGS-VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES 119 (446)
T ss_pred ccCCE-EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc
Confidence 34454 88999999999999855 445553 36799998754
No 380
>PRK08233 hypothetical protein; Provisional
Probab=95.95 E-value=0.011 Score=41.06 Aligned_cols=26 Identities=8% Similarity=0.073 Sum_probs=21.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.=|.+.|.||+|||||.+.++..++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~ 29 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 35778899999999999988877653
No 381
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.95 E-value=0.0079 Score=48.46 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=29.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|...
T Consensus 41 e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i 78 (375)
T PRK09452 41 EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDI 78 (375)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 37899999999999999999998765 577777643
No 382
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=95.95 E-value=0.0051 Score=41.49 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
.|.++|++|+|||+|++.+..-
T Consensus 1 ki~iiG~~~~GKssli~~~~~~ 22 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLG 22 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 3789999999999999988755
No 383
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.94 E-value=0.0086 Score=45.22 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
-.+.|+|++|+|||+||+.++.+.+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (261)
T PRK14263 35 EITGFIGPSGCGKSTVLRSLNRMND 59 (261)
T ss_pred CEEEEECCCCCCHHHHHHHHHcccc
Confidence 3889999999999999999998864
No 384
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.94 E-value=0.0065 Score=46.19 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=28.9
Q ss_pred hhHHHHHHH-hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 11 TWMDDIKEW-TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 11 ~g~~~iK~a-L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
+|++.++.. ..++.. + + .-|+||.|+||+|||++++.+++-.
T Consensus 18 ~g~~~~~~~L~~~~~~-------~---~-~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 18 LGQDEVVERLSRAVDS-------P---N-LPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred cCCHHHHHHHHHHHhC-------C---C-CceEEEECCCCCCHHHHHHHHHHHh
Confidence 677887777 222221 0 1 1279999999999999998776543
No 385
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.94 E-value=0.0063 Score=45.57 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=27.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+ -.|+..|..
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~ 81 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGEN 81 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEE
Confidence 4889999999999999999998863 246666643
No 386
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.93 E-value=0.012 Score=43.92 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=27.0
Q ss_pred eEEEeeCCCChhhHHH-HHHHHHhC---CceEEEeeccc
Q psy9645 40 INVLLCGDPGTAKSQF-LKYMEKIG---PRAIFTTGQGA 74 (98)
Q Consensus 40 ihiLliGdpGtGKSql-L~~~~~l~---prsv~~sG~~s 74 (98)
..+|+.|+||+|||.| ++++.+-+ .+++|++-..+
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 4899999999999998 56665543 45889887643
No 387
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.93 E-value=0.0067 Score=42.03 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.8
Q ss_pred CceEEEeeCCCChhhHHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
..+++.++|.|++|||+|++....
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhc
Confidence 357899999999999999998764
No 388
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.93 E-value=0.0084 Score=45.96 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=27.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+ -.|++.|..
T Consensus 66 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~ 107 (285)
T PRK14254 66 QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKN 107 (285)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEE
Confidence 3889999999999999999998853 356666653
No 389
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.93 E-value=0.0081 Score=48.37 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=28.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
.+.|+|++|+|||+|||.++.+.+. .|++.|...
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i 83 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL 83 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 7899999999999999999998755 677777643
No 390
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.93 E-value=0.0063 Score=46.50 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=23.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-.+.|+|++|+|||+||+.++.+.+.
T Consensus 28 e~~~l~G~nGsGKSTLl~~laG~~~p 53 (272)
T PRK13547 28 RVTALLGRNGAGKSTLLKALAGDLTG 53 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48999999999999999999988754
No 391
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.93 E-value=0.0074 Score=49.38 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=28.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|++.|..
T Consensus 31 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 67 (501)
T PRK10762 31 RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKE 67 (501)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 48899999999999999999998754 66776653
No 392
>PLN02200 adenylate kinase family protein
Probab=95.92 E-value=0.018 Score=43.38 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=23.6
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
......|+++|.||+|||++.+.+++...-
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~ 69 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGF 69 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334568999999999999998877765444
No 393
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.92 E-value=0.0042 Score=42.42 Aligned_cols=27 Identities=33% Similarity=0.591 Sum_probs=23.4
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+.+|||.|+|||||+.+.+++.....+
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 458999999999999999999988776
No 394
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.92 E-value=0.0089 Score=43.21 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=28.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC---Cc--eEEEeeccc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG---PR--AIFTTGQGA 74 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~---pr--sv~~sG~~s 74 (98)
-++.|+|++|+|||+||+.++.+. |. .|+..|...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~ 66 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDI 66 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEEC
Confidence 489999999999999999999872 32 577777543
No 395
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=95.92 E-value=0.007 Score=42.79 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=18.5
Q ss_pred EEEeeCCCChhhHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~ 60 (98)
+++++|++|+|||+|++...
T Consensus 3 Ki~ivG~~g~GKStLl~~l~ 22 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFT 22 (187)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999998876
No 396
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.91 E-value=0.0084 Score=47.75 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=28.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
.+.|+|++|+|||+||+.++.+.+. .|+..|...
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i 66 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV 66 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 7899999999999999999998765 566666543
No 397
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.91 E-value=0.0099 Score=51.76 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=34.7
Q ss_pred chhHHHHHHH-hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 10 RTWMDDIKEW-TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 10 ~~g~~~iK~a-L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.+|++.+|.. +..+- +.+... ..++. ++||+|+||||||++.+.+++...+..+
T Consensus 322 ~~G~~~~k~~i~~~~~-~~~~~~---~~~~~-~lll~GppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 322 HYGLKKVKERILEYLA-VQKLRG---KMKGP-ILCLVGPPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred cCChHHHHHHHHHHHH-HHHhhc---CCCCc-eEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence 5678888877 22111 111100 12333 7999999999999999999877655433
No 398
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.91 E-value=0.0068 Score=42.61 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
+.|+++|++++|||+|++....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~ 22 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999887653
No 399
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.91 E-value=0.0065 Score=42.24 Aligned_cols=22 Identities=18% Similarity=0.511 Sum_probs=17.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
.|.|.|-||+|||+|++..++.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 4789999999999999988876
No 400
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=95.91 E-value=0.0086 Score=46.96 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=28.6
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCC-------ceEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGP-------RAIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~p-------rsv~~sG~~ 73 (98)
+|+ .+.|+|.+|+|||+|++.+..+.+ -.|+..|..
T Consensus 32 ~Ge-~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 32 EGE-IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 444 689999999999999999999975 246666654
No 401
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.90 E-value=0.0092 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
|++|+|+||+|||.+.+.++...
T Consensus 202 n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999998776543
No 402
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.90 E-value=0.0067 Score=45.93 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.3
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
..-.+.|+|++|+|||+||+.++.+.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 334889999999999999999998854
No 403
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.90 E-value=0.006 Score=45.75 Aligned_cols=31 Identities=32% Similarity=0.520 Sum_probs=26.0
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCce
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPRA 66 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~prs 66 (98)
+|+.-+++++|.+|+|||++|++.....|..
T Consensus 124 v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cccceEEEEECCCccccchHHHHHhhhcccc
Confidence 3455699999999999999999888777664
No 404
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.90 E-value=0.0095 Score=47.45 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=29.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGAS 75 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss 75 (98)
.+.|+|.+|+|||+|||.++.+.+. .|++.|...+
T Consensus 33 i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 33 IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 6889999999999999999998764 6777776443
No 405
>PHA02244 ATPase-like protein
Probab=95.90 E-value=0.0084 Score=49.24 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=26.5
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCceEEE
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFT 69 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~ 69 (98)
+...+|||.|+||||||+|+++++....+.++.
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~ 149 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYF 149 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 344599999999999999999988776654443
No 406
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0069 Score=43.52 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-.+.|+|++|+|||+||+.++.+.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 488999999999999999999753
No 407
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=95.89 E-value=0.0085 Score=42.01 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=19.6
Q ss_pred eEEEeeCCCChhhHHHHH-HHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLK-YMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~-~~~~l~p 64 (98)
+.|+++||+|+|||+|++ ++..-++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~ 28 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP 28 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC
Confidence 689999999999999975 4444443
No 408
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.88 E-value=0.0091 Score=48.60 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCce
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRA 66 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prs 66 (98)
-.+||.|+||||||.|++.+++.....
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~l~~~ 206 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHTTAT 206 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 379999999999999999998776543
No 409
>KOG0080|consensus
Probab=95.88 E-value=0.0069 Score=45.62 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=23.7
Q ss_pred cCceEEEeeCCCChhhHHH-HHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQF-LKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSql-L~~~~~l~pr 65 (98)
--.+.||||||+|+|||.| |+|+.+.+..
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~ 38 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDD 38 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCc
Confidence 3458999999999999998 7788876643
No 410
>PRK14528 adenylate kinase; Provisional
Probab=95.88 E-value=0.01 Score=42.80 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
+|+++|.||+|||++.+.+++...
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999998875543
No 411
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.88 E-value=0.013 Score=42.65 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=26.8
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHH-Hh-C--------CceEEEeecc
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYME-KI-G--------PRAIFTTGQG 73 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~-~l-~--------prsv~~sG~~ 73 (98)
-.+|. -+.|.|+||+|||+|+..++ .. . .+.+|++...
T Consensus 16 i~~g~-i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 16 IETGS-ITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCe-EEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 34454 67999999999999976554 32 2 3577877765
No 412
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.88 E-value=0.0089 Score=49.47 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-++||.|+||||||.|++++++....
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~el~~ 243 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVANETSA 243 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 47999999999999999999987654
No 413
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.87 E-value=0.0069 Score=46.19 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=28.0
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEee
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTG 71 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG 71 (98)
++..-.+.|+|.+|+|||+||+.++.+.|. .|+..|
T Consensus 47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g 85 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG 85 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC
Confidence 333348999999999999999999998765 344444
No 414
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.87 E-value=0.0072 Score=42.24 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=20.8
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
...|+++|++|+|||+|++....-
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999987653
No 415
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.86 E-value=0.0082 Score=47.27 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=29.0
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCce------EEEeecc
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPRA------IFTTGQG 73 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~prs------v~~sG~~ 73 (98)
.+|+ .+.|+|++|+|||+|++.+..+.+.. |+..|..
T Consensus 40 ~~Ge-~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 40 RAGE-TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred cCCC-EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 3444 68999999999999999999998653 5555553
No 416
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.86 E-value=0.0093 Score=42.11 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=22.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.++|.|+.|+|||+|+|.+++.+..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 6999999999999999999887654
No 417
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.85 E-value=0.0074 Score=45.17 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
-.+.|+|++|+|||+||+.++.+.+
T Consensus 39 e~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 39 SVTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3799999999999999999998764
No 418
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=95.85 E-value=0.0074 Score=42.82 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=18.1
Q ss_pred EEEeeCCCChhhHHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~ 61 (98)
+|+++|++|+|||+|++....
T Consensus 2 kivivG~~~vGKTsli~~~~~ 22 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTR 22 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999876643
No 419
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=95.84 E-value=0.0079 Score=49.24 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=28.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+|||.++.+.++ .|++.|..
T Consensus 32 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~ 68 (510)
T PRK09700 32 EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN 68 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEE
Confidence 47899999999999999999998754 56776653
No 420
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.84 E-value=0.011 Score=43.74 Aligned_cols=34 Identities=26% Similarity=0.537 Sum_probs=27.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC---C-----ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG---P-----RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~---p-----rsv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+. | -.|+..|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~ 71 (250)
T PRK14266 30 SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVD 71 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEE
Confidence 489999999999999999999763 2 356666654
No 421
>PRK06921 hypothetical protein; Provisional
Probab=95.84 E-value=0.0097 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-+++|.|+||+|||.|+..+++-+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 379999999999999999887643
No 422
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=95.84 E-value=0.0074 Score=42.34 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.5
Q ss_pred ceEEEeeCCCChhhHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~ 60 (98)
.++|+++|++|+|||.|++...
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~ 34 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLK 34 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHh
Confidence 5899999999999999987663
No 423
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=95.82 E-value=0.0078 Score=42.72 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=19.6
Q ss_pred ceEEEeeCCCChhhHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~ 60 (98)
.+.|+++|++++|||+|++...
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~ 38 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLK 38 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHh
Confidence 4789999999999999988764
No 424
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=95.82 E-value=0.0088 Score=42.13 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.2
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
+.++++|++|+|||.|+....
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~ 22 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYT 22 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999976554
No 425
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.82 E-value=0.0098 Score=47.37 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=28.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
-.+.|+|++|+|||+||+.++.+.+. .|+..|...
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~ 68 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI 68 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEEC
Confidence 37899999999999999999999764 667666543
No 426
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.81 E-value=0.0085 Score=45.22 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=27.8
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
.-.+.|+|++|+|||+||+.++.+.+ -.|+..|..
T Consensus 46 Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 88 (267)
T PRK14237 46 NKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGID 88 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEE
Confidence 34889999999999999999998864 246666653
No 427
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.81 E-value=0.013 Score=40.48 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.5
Q ss_pred EEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+.|+|.+|+|||+|++.+.+..|.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc
Confidence 678999999999999999988765
No 428
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=95.81 E-value=0.0073 Score=43.88 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=18.4
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
++|+++|++++|||+|++...
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~ 21 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFA 21 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHh
Confidence 478999999999999987664
No 429
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.81 E-value=0.016 Score=45.00 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=38.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccCCCCceEEEEec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGASAVGLTAYVGKH 86 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss~~GLTasv~r~ 86 (98)
--+.++|++|||||+||+.++.+.++ +|-..|...++.|=-=.|+..
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 47889999999999999999999866 677777777777766666665
No 430
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.81 E-value=0.0077 Score=45.56 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=28.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
+|+ .+.|+|++|+|||+||+.++.+.+. .|+..|.
T Consensus 37 ~Ge-~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~ 74 (268)
T PRK10419 37 SGE-TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGE 74 (268)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 443 7999999999999999999998764 4555554
No 431
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.80 E-value=0.013 Score=44.95 Aligned_cols=36 Identities=22% Similarity=0.475 Sum_probs=27.7
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.+|+ -+.|+|++|+||||||+.+..+..+ .+++.|.
T Consensus 29 ~~Ge-~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~ 67 (226)
T COG1136 29 EAGE-FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGK 67 (226)
T ss_pred cCCC-EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCE
Confidence 4454 8999999999999999999877544 4455553
No 432
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=95.80 E-value=0.0081 Score=42.03 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.0
Q ss_pred EEEeeCCCChhhHHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~ 61 (98)
+|+++|++|+|||+|++....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~ 22 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCK 22 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999775543
No 433
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.79 E-value=0.009 Score=46.52 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=24.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC-ceEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP-RAIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p-rsv~~sG 71 (98)
|+||.|.||+|||.|.+.+++..- +-+.+..
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~ 76 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQC 76 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCeEEEec
Confidence 999999999999999998887664 3333333
No 434
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=95.79 E-value=0.0083 Score=41.89 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.6
Q ss_pred ceEEEeeCCCChhhHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~ 60 (98)
.+.|+++|++++|||+|++...
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~ 30 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLK 30 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHc
Confidence 4799999999999999988664
No 435
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=95.79 E-value=0.0086 Score=41.69 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=19.4
Q ss_pred EEEeeCCCChhhHHHHH-HHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLK-YMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~-~~~~l~p 64 (98)
.|+++||+|+|||+|++ ++...++
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~ 26 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYV 26 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC
Confidence 68999999999999986 5655443
No 436
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.78 E-value=0.0083 Score=45.06 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-.+.|+|.+|+|||+||+.++.+.|.
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 34 KVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCC
Confidence 48999999999999999999998764
No 437
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=95.77 E-value=0.009 Score=43.92 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=19.9
Q ss_pred cCceEEEeeCCCChhhHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYM 59 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~ 59 (98)
...++|+++|++|+|||+|++..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~ 33 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRH 33 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHH
Confidence 45689999999999999998754
No 438
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.77 E-value=0.0077 Score=48.98 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=26.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.+.|+|++|+|||+|||.++.+.+. .|+..|.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~ 65 (490)
T PRK10938 31 SWAFVGANGSGKSALARALAGELPLLSGERQSQFS 65 (490)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCceEEECCc
Confidence 7899999999999999999998765 3444443
No 439
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=95.77 E-value=0.01 Score=48.90 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=24.4
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.|+ .+.|+|++|+|||+||+.++.+.|.
T Consensus 34 ~Ge-~~~iiG~nGsGKSTLl~~i~G~~~~ 61 (529)
T PRK15134 34 AGE-TLALVGESGSGKSVTALSILRLLPS 61 (529)
T ss_pred CCC-EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 444 7899999999999999999999763
No 440
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.77 E-value=0.0085 Score=48.12 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=24.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc-eEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR-AIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr-sv~~sG~ 72 (98)
||||.|.||||||++.+.+++.... -+.++..
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~ 98 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLD 98 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEEEEec
Confidence 8999999999999999988765544 3444443
No 441
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=95.77 E-value=0.0079 Score=41.46 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=18.4
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
+.|+++|++++|||+|++...
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~ 21 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLK 21 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999988763
No 442
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=95.76 E-value=0.0072 Score=45.16 Aligned_cols=33 Identities=33% Similarity=0.392 Sum_probs=27.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc--eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR--AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr--sv~~sG~ 72 (98)
-.+.|+|++|+|||+|++.++.+.|. .|+..|.
T Consensus 23 ei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~ 57 (248)
T PRK03695 23 EILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQ 57 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCE
Confidence 47899999999999999999988754 4555554
No 443
>PRK12377 putative replication protein; Provisional
Probab=95.76 E-value=0.0085 Score=46.00 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
.+++|.|+||||||.|+..+++.+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999998876653
No 444
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.76 E-value=0.011 Score=47.17 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=30.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGASA 76 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss~ 76 (98)
--+.|+|.+||||||+||.+-.+... .|++.|...+.
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~ 67 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD 67 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeeccc
Confidence 36889999999999999999999866 67877775543
No 445
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.76 E-value=0.0083 Score=45.59 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-++.|+|++|+|||+||+.++.+.
T Consensus 47 e~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 47 KIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 379999999999999999999775
No 446
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.75 E-value=0.0097 Score=44.19 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=27.4
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeec
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQ 72 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~ 72 (98)
+|+ .+.|+|++|+|||+|++.++.+.+ -.|+..|.
T Consensus 30 ~Ge-~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 30 KRE-VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 444 789999999999999999998853 24666564
No 447
>PRK09087 hypothetical protein; Validated
Probab=95.75 E-value=0.012 Score=44.18 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=25.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~sG~ 72 (98)
.++|.|++|+|||+|++.+++- .+..|++..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~-~~~~~i~~~ 76 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREK-SDALLIHPN 76 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHh-cCCEEecHH
Confidence 4899999999999999988765 466677763
No 448
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.75 E-value=0.0088 Score=46.63 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=26.5
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHHhCC--ceEEEeec
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEKIGP--RAIFTTGQ 72 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~l~p--rsv~~sG~ 72 (98)
.+..+--.-|||++|||||||||..-+..- ..+.+.|.
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~ 68 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGE 68 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEE
Confidence 344455678999999999999997765531 14555554
No 449
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=95.74 E-value=0.011 Score=48.23 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=28.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+|||.++.+.+. .|++.|..
T Consensus 30 eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~ 66 (402)
T PRK09536 30 SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDD 66 (402)
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 37899999999999999999998765 57777754
No 450
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.74 E-value=0.0079 Score=49.53 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=27.5
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEee
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTG 71 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG 71 (98)
...-.+.|+|++|+|||+|||.++.+.|. .|+..+
T Consensus 25 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~ 62 (530)
T PRK15064 25 GGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP 62 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 33347999999999999999999998764 455444
No 451
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.74 E-value=0.013 Score=42.72 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=22.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.|+++|.||+|||++.+.+++-..-..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~i 29 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHI 29 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999988876554333
No 452
>KOG0079|consensus
Probab=95.74 E-value=0.0073 Score=45.05 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=23.4
Q ss_pred EEEeeCCCChhhHHH-HHHHHHhCCceEEE
Q psy9645 41 NVLLCGDPGTAKSQF-LKYMEKIGPRAIFT 69 (98)
Q Consensus 41 hiLliGdpGtGKSql-L~~~~~l~prsv~~ 69 (98)
..|||||||+|||.| ++|+.+-+..+..+
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs~sYit 39 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFSGSYIT 39 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccccceEE
Confidence 468999999999998 67888877776543
No 453
>PF12846 AAA_10: AAA-like domain
Probab=95.74 E-value=0.0091 Score=43.81 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.6
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
-|++++|.+|+|||++++.+.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~ 22 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLL 22 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 499999999999999987664
No 454
>PRK06526 transposase; Provisional
Probab=95.74 E-value=0.0082 Score=46.00 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=20.6
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..-|++|+|+||+|||.|+..+..-
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHH
Confidence 3458999999999999998876543
No 455
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.73 E-value=0.015 Score=44.05 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=25.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~ 72 (98)
.+|+++|.||+|||++.+.+++...-..+.+|.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gd 39 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMGN 39 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECCh
Confidence 569999999999999999887765544444443
No 456
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=95.73 E-value=0.0065 Score=38.39 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=17.8
Q ss_pred eeCCCChhhHHHHHHHHHhCC
Q psy9645 44 LCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 44 liGdpGtGKSqlL~~~~~l~p 64 (98)
++|+||+|||+|++.+.....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~ 21 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEF 21 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCc
Confidence 689999999999998876533
No 457
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.73 E-value=0.014 Score=45.32 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=26.1
Q ss_pred eEEEeeCCCChhhHHH-HHHHHHhC-C--------ceEEEeeccc
Q psy9645 40 INVLLCGDPGTAKSQF-LKYMEKIG-P--------RAIFTTGQGA 74 (98)
Q Consensus 40 ihiLliGdpGtGKSql-L~~~~~l~-p--------rsv~~sG~~s 74 (98)
.-+++.|+||+||||| ++++.+.. | +.+|++-.++
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~ 147 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGT 147 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCC
Confidence 4788999999999999 55655532 2 6788887653
No 458
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=95.73 E-value=0.013 Score=48.29 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=28.0
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
+++++|++|+|||+|++.+..+.+. .|++.|..
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 8999999999999999999988765 56666643
No 459
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.73 E-value=0.011 Score=47.63 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=21.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
|++|.|+||||||+|++.+++....
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~~ 62 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATDA 62 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 8999999999999999998866543
No 460
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=95.72 E-value=0.0079 Score=46.76 Aligned_cols=24 Identities=21% Similarity=0.577 Sum_probs=21.4
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
+.+|+++|++|+|||+|++...+-
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~ 27 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNS 27 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhc
Confidence 479999999999999999988764
No 461
>PLN03118 Rab family protein; Provisional
Probab=95.72 E-value=0.01 Score=42.76 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.1
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
-..+.|+++|++|+|||+|++....
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~ 36 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 3468999999999999999876653
No 462
>PRK08181 transposase; Validated
Probab=95.72 E-value=0.0081 Score=46.61 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
|++|+|+||+|||.|+..+...
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~ 129 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA 129 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH
Confidence 7999999999999999887653
No 463
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.72 E-value=0.012 Score=41.32 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=25.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC----ceEEEee
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP----RAIFTTG 71 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p----rsv~~sG 71 (98)
..|+++|.||+|||++.+.+++.+. ..+++.+
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 4899999999999999998776553 3566655
No 464
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.71 E-value=0.014 Score=45.71 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=25.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC------CceEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG------PRAIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~------prsv~~sG~ 72 (98)
++++.|+||+|||.+++.+.+-. -+.+|++..
T Consensus 57 ~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~ 94 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ 94 (394)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 68999999999999999887543 235677654
No 465
>PRK09183 transposase/IS protein; Provisional
Probab=95.71 E-value=0.0075 Score=46.08 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.5
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.-+++|+|+||+|||+|+..+...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 348999999999999999987544
No 466
>PHA00729 NTP-binding motif containing protein
Probab=95.71 E-value=0.0096 Score=45.58 Aligned_cols=23 Identities=13% Similarity=0.411 Sum_probs=19.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+|+|.|.||+|||+|...+++-
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999997776543
No 467
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.70 E-value=0.0098 Score=43.41 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
++|+++|++|+|||+|++....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~ 24 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTE 24 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999887754
No 468
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.70 E-value=0.011 Score=42.99 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=20.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+|+++|.||+|||++.+.+++-..-
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~ 25 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGL 25 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3899999999999998888765433
No 469
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.70 E-value=0.012 Score=48.64 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=29.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
.+.|+|++|+|||||++.+..+.+. .|+..|...
T Consensus 371 ~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i 407 (582)
T PRK11176 371 TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL 407 (582)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEh
Confidence 7999999999999999999999865 577777643
No 470
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.69 E-value=0.013 Score=45.20 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=28.6
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
+|+ .+.|+|++|+|||+||+.+..+.+. .|++.|..
T Consensus 27 ~Ge-i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~ 65 (301)
T TIGR03522 27 KGR-IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGED 65 (301)
T ss_pred CCe-EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 444 6999999999999999999998765 45555643
No 471
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.69 E-value=0.015 Score=39.84 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=23.5
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCceEEEeec
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQ 72 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~ 72 (98)
.-.++|+|++|+|||+||+.+. ...+.+.|.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~---~G~i~~~g~ 45 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI---KRKHRLVGD 45 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh---CCeEEEeeE
Confidence 3478999999999999999865 233555554
No 472
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.68 E-value=0.012 Score=50.79 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.4
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.-|++|+|+||+|||.+.+.+++..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999887653
No 473
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.68 E-value=0.0097 Score=44.15 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=26.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh---CC-----ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI---GP-----RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l---~p-----rsv~~sG~~ 73 (98)
-++.|+|++|+|||+||+.++.+ .| -.|+..|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~ 71 (250)
T PRK14245 30 SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRN 71 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEe
Confidence 37999999999999999999865 23 346666653
No 474
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=95.67 E-value=0.012 Score=46.40 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=28.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
.+.|+|++|+|||+|++.+..+.+. .|+..|...
T Consensus 49 ~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 49 TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 7899999999999999999998765 566666543
No 475
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.66 E-value=0.0093 Score=42.29 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=17.4
Q ss_pred EEEeeCCCChhhHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~ 60 (98)
.|+++|++++|||+|+....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~ 21 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFK 21 (191)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999986553
No 476
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=95.66 E-value=0.011 Score=41.95 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.3
Q ss_pred ceEEEeeCCCChhhHHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.++|+++|+||+|||+|++....
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhc
Confidence 37999999999999999987764
No 477
>PRK00089 era GTPase Era; Reviewed
Probab=95.66 E-value=0.0087 Score=45.38 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
-.|.++|+||+|||+|++....
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g 27 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVG 27 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3799999999999999998753
No 478
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=95.66 E-value=0.0079 Score=40.83 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=17.6
Q ss_pred EEEeeCCCChhhHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~ 60 (98)
.|+++|+|++|||+|++...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~ 20 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQ 20 (158)
T ss_pred CEEEECCCCCCHHHHHHHHc
Confidence 37899999999999998774
No 479
>PRK04213 GTP-binding protein; Provisional
Probab=95.65 E-value=0.0093 Score=42.23 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=20.4
Q ss_pred ceEEEeeCCCChhhHHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...|+++|+|++|||+|++....
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~ 31 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTG 31 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999988764
No 480
>PRK04040 adenylate kinase; Provisional
Probab=95.64 E-value=0.015 Score=42.39 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
..|++.|.||+|||++++.+++..|
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999998877765
No 481
>PRK08727 hypothetical protein; Validated
Probab=95.64 E-value=0.018 Score=43.04 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=24.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHh----CCceEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI----GPRAIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l----~prsv~~sG~ 72 (98)
.++|.|.+|+|||.|+++++.- -.+.+|++-.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 4999999999999999986433 3456777654
No 482
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.63 E-value=0.018 Score=49.86 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCce
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRA 66 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prs 66 (98)
++||+|+||+|||.|.+.+++.....
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~ 511 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVH 511 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCC
Confidence 68999999999999999998877543
No 483
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=95.63 E-value=0.011 Score=40.94 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=17.4
Q ss_pred eEEEeeCCCChhhHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYM 59 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~ 59 (98)
++++++|++|+|||+|++..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~ 20 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSY 20 (173)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47899999999999997654
No 484
>KOG0739|consensus
Probab=95.62 E-value=0.022 Score=46.74 Aligned_cols=30 Identities=33% Similarity=0.474 Sum_probs=25.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEEEe
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIFTT 70 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~~s 70 (98)
--|||.|+||||||.|.+.++.-+. |.|.|
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAn-STFFS 196 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEAN-STFFS 196 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcC-CceEE
Confidence 3699999999999999999998877 55544
No 485
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.62 E-value=0.0094 Score=45.31 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=23.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-.+.|+|.+|+|||+||+.++.+.+.
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 37999999999999999999999865
No 486
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=95.62 E-value=0.011 Score=48.17 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=27.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
.+.|+|.+|+|||+||+.++.+.++ .|+..|..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 61 (491)
T PRK10982 26 IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE 61 (491)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEE
Confidence 7899999999999999999998764 56666653
No 487
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.62 E-value=0.014 Score=45.22 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=27.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC--------ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP--------RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p--------rsv~~sG~~ 73 (98)
-.+.|+|.+|+|||+||+.++.+.+ -.|++.|..
T Consensus 72 e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~ 113 (305)
T PRK14264 72 SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQD 113 (305)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence 3889999999999999999998853 356766654
No 488
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.62 E-value=0.011 Score=48.61 Aligned_cols=61 Identities=21% Similarity=0.298 Sum_probs=38.4
Q ss_pred CCcccCCCCchhHHHHHHH-----hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHH-HHHHHHhC----CceEEEe
Q psy9645 1 MKQDRGRQRRTWMDDIKEW-----TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQF-LKYMEKIG----PRAIFTT 70 (98)
Q Consensus 1 ~~~~~~~~~~~g~~~iK~a-----L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSql-L~~~~~l~----prsv~~s 70 (98)
|.|-+++|.. +-++-+ =.|-||. .+| .-+|+.|+||+|||.| ++++.+.+ .+++|++
T Consensus 1 ~~~~~~~~~~---~ri~TGI~~LD~~l~GG~---------p~G-s~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 1 MNQPSASPGI---EKLPTGIEGFDDITHGGL---------PKG-RPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred CCCCccCCCC---ccccCCchhHHHhhcCCC---------CCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 6788888733 233333 1123454 344 4899999999999999 45554433 3578888
Q ss_pred eccc
Q psy9645 71 GQGA 74 (98)
Q Consensus 71 G~~s 74 (98)
-.-+
T Consensus 68 ~ee~ 71 (509)
T PRK09302 68 FEES 71 (509)
T ss_pred ccCC
Confidence 7643
No 489
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.62 E-value=0.01 Score=46.09 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=23.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-|++++|+||+|||+||+.++.+.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 49999999999999999999988754
No 490
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=95.62 E-value=0.0091 Score=42.78 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
++|+|+|.||+|||+|++.+..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg 22 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILG 22 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhC
Confidence 4799999999999999998864
No 491
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.61 E-value=0.0083 Score=44.19 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=27.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC---C--ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG---P--RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~---p--rsv~~sG~~ 73 (98)
-.+.|+|.+|+|||+||+.++.+. | -.|+..|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~ 66 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD 66 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCc
Confidence 488999999999999999999984 2 256666653
No 492
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.61 E-value=0.014 Score=45.25 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=27.7
Q ss_pred EEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
.-+||++|.|||+||..++++.++ .|++.|..
T Consensus 30 Ts~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~ 64 (252)
T COG4604 30 TSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLE 64 (252)
T ss_pred eEEECCCCccHHHHHHHHHHhccccCceEEEeeee
Confidence 568999999999999999999987 67777764
No 493
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=95.61 E-value=0.01 Score=39.67 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=18.7
Q ss_pred EEEeeCCCChhhHHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~ 61 (98)
+|.++|+|++|||+|++....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 688999999999999998764
No 494
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=95.60 E-value=0.01 Score=42.00 Aligned_cols=20 Identities=20% Similarity=0.379 Sum_probs=17.3
Q ss_pred EEEeeCCCChhhHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~ 60 (98)
.|+++|++|+|||+|++...
T Consensus 1 ki~ivG~~~vGKTsli~~l~ 20 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLC 20 (190)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 37899999999999987664
No 495
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.60 E-value=0.011 Score=46.51 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=25.1
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.+.+|||.|++||||+.+.+++...++|
T Consensus 28 ~~~pVlI~GE~GtGK~~lA~~iH~~s~r 55 (326)
T PRK11608 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (326)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhCCc
Confidence 3459999999999999999999998885
No 496
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.59 E-value=0.01 Score=43.59 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-++|+|++|+|||+||+.+.-++
T Consensus 25 ~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 56699999999999999998554
No 497
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.59 E-value=0.014 Score=50.37 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=23.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCce
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRA 66 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prs 66 (98)
-++||.|+||||||+|++.+++.....
T Consensus 213 ~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 379999999999999999998876553
No 498
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.59 E-value=0.01 Score=51.20 Aligned_cols=28 Identities=25% Similarity=0.621 Sum_probs=25.0
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+|+ ++|+.|++|||||+|+|.++.+=|=
T Consensus 418 ~G~-~llI~G~SG~GKTsLlRaiaGLWP~ 445 (604)
T COG4178 418 PGE-RLLITGESGAGKTSLLRALAGLWPW 445 (604)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhccCcc
Confidence 444 9999999999999999999999775
No 499
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=95.59 E-value=0.0094 Score=43.03 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
|+|.|+|-|.+|||+|.+.....-
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~ 24 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK 24 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 789999999999999999888764
No 500
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.58 E-value=0.013 Score=47.86 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=28.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.++|++|+|||||++.+..+.+. .|++.|..
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~ 398 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVS 398 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 38999999999999999999998866 57777653
Done!