Query psy9645
Match_columns 98
No_of_seqs 102 out of 752
Neff 5.2
Searched_HMMs 29240
Date Sat Aug 17 00:59:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f8t_A Predicted ATPase involv 99.7 2E-18 6.8E-23 142.3 5.0 78 10-98 215-295 (506)
2 3f9v_A Minichromosome maintena 99.6 1.3E-16 4.5E-21 131.6 1.8 90 8-98 295-386 (595)
3 2r44_A Uncharacterized protein 98.1 4.7E-06 1.6E-10 62.1 5.6 76 8-97 27-106 (331)
4 1g8p_A Magnesium-chelatase 38 97.7 2.5E-05 8.6E-10 57.7 3.9 50 10-71 26-77 (350)
5 1lv7_A FTSH; alpha/beta domain 97.4 0.00012 4.2E-09 52.5 4.4 62 9-72 13-79 (257)
6 3n70_A Transport activator; si 97.4 6.8E-05 2.3E-09 50.2 2.8 27 39-65 24-50 (145)
7 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.00012 4.2E-09 51.9 4.2 63 9-71 7-72 (262)
8 3nbx_X ATPase RAVA; AAA+ ATPas 97.4 6.6E-05 2.3E-09 61.1 3.0 44 8-65 22-67 (500)
9 1ofh_A ATP-dependent HSL prote 97.4 8.1E-05 2.8E-09 53.8 2.9 64 9-72 16-84 (310)
10 3tr0_A Guanylate kinase, GMP k 97.3 0.00017 5.9E-09 49.4 4.0 32 41-73 9-40 (205)
11 3clv_A RAB5 protein, putative; 97.3 0.00017 5.9E-09 48.0 3.8 28 35-62 3-30 (208)
12 1ixz_A ATP-dependent metallopr 97.3 0.00011 3.9E-09 52.6 2.8 31 41-71 51-82 (254)
13 3b9p_A CG5977-PA, isoform A; A 97.3 0.0002 6.7E-09 52.2 3.7 57 10-67 23-82 (297)
14 3eie_A Vacuolar protein sortin 97.3 0.00017 5.7E-09 54.1 3.4 57 10-68 20-80 (322)
15 3t1o_A Gliding protein MGLA; G 97.3 0.0002 7E-09 47.8 3.5 29 37-65 12-40 (198)
16 1upt_A ARL1, ADP-ribosylation 97.2 0.00022 7.6E-09 46.7 3.5 27 35-61 3-29 (171)
17 1iy2_A ATP-dependent metallopr 97.2 0.00016 5.5E-09 52.8 2.8 31 41-71 75-106 (278)
18 2bdt_A BH3686; alpha-beta prot 97.2 0.00029 9.8E-09 48.2 3.9 32 41-72 4-35 (189)
19 1jbk_A CLPB protein; beta barr 97.2 0.00021 7.1E-09 47.1 3.0 24 40-63 44-67 (195)
20 4a74_A DNA repair and recombin 97.2 0.00031 1.1E-08 48.6 3.9 37 36-73 23-69 (231)
21 3hws_A ATP-dependent CLP prote 97.2 0.00039 1.3E-08 52.6 4.5 31 38-68 50-80 (363)
22 3h4m_A Proteasome-activating n 97.1 0.00037 1.3E-08 50.3 4.1 30 39-68 51-80 (285)
23 1ye8_A Protein THEP1, hypothet 97.1 0.00028 9.7E-09 49.4 3.1 24 41-64 2-25 (178)
24 2p65_A Hypothetical protein PF 97.1 0.00028 9.4E-09 46.7 2.8 24 40-63 44-67 (187)
25 3ec2_A DNA replication protein 97.1 0.00033 1.1E-08 47.6 3.0 25 40-64 39-63 (180)
26 1kag_A SKI, shikimate kinase I 97.0 0.00052 1.8E-08 45.9 3.8 30 41-71 6-35 (173)
27 2x8a_A Nuclear valosin-contain 97.0 0.00049 1.7E-08 51.0 4.0 31 42-72 47-78 (274)
28 3q85_A GTP-binding protein REM 97.0 0.00041 1.4E-08 45.4 3.1 24 38-61 1-24 (169)
29 1kao_A RAP2A; GTP-binding prot 97.0 0.00045 1.5E-08 44.6 3.2 23 39-61 3-25 (167)
30 3pxg_A Negative regulator of g 97.0 0.00049 1.7E-08 54.6 3.9 45 8-63 180-225 (468)
31 2bjv_A PSP operon transcriptio 97.0 0.00038 1.3E-08 50.1 2.9 26 40-65 30-55 (265)
32 1z08_A RAS-related protein RAB 97.0 0.00049 1.7E-08 44.9 3.2 25 38-62 5-29 (170)
33 3k1j_A LON protease, ATP-depen 97.0 0.00054 1.9E-08 55.9 3.9 43 10-66 43-87 (604)
34 2erx_A GTP-binding protein DI- 97.0 0.00052 1.8E-08 44.6 3.1 23 39-61 3-25 (172)
35 1c1y_A RAS-related protein RAP 97.0 0.00054 1.9E-08 44.5 3.1 23 39-61 3-25 (167)
36 1z0j_A RAB-22, RAS-related pro 97.0 0.00056 1.9E-08 44.5 3.2 24 39-62 6-29 (170)
37 1in4_A RUVB, holliday junction 96.9 0.00048 1.6E-08 52.0 3.2 33 40-72 52-85 (334)
38 1ky3_A GTP-binding protein YPT 96.9 0.00059 2E-08 44.9 3.3 26 36-61 5-30 (182)
39 1z2a_A RAS-related protein RAB 96.9 0.00058 2E-08 44.4 3.2 24 38-61 4-27 (168)
40 1ek0_A Protein (GTP-binding pr 96.9 0.00056 1.9E-08 44.4 3.1 24 39-62 3-26 (170)
41 3oes_A GTPase rhebl1; small GT 96.9 0.00048 1.6E-08 47.2 2.9 32 31-62 16-47 (201)
42 2kjq_A DNAA-related protein; s 96.9 0.00062 2.1E-08 46.3 3.4 33 41-73 38-74 (149)
43 3vfd_A Spastin; ATPase, microt 96.9 0.00089 3.1E-08 51.3 4.6 59 10-68 117-177 (389)
44 3bc1_A RAS-related protein RAB 96.9 0.00058 2E-08 45.3 3.1 25 37-61 9-33 (195)
45 2dhr_A FTSH; AAA+ protein, hex 96.9 0.0011 3.9E-08 53.9 5.4 61 10-72 33-98 (499)
46 1r2q_A RAS-related protein RAB 96.9 0.0006 2.1E-08 44.2 3.1 24 38-61 5-28 (170)
47 1u8z_A RAS-related protein RAL 96.9 0.00061 2.1E-08 44.0 3.1 24 39-62 4-27 (168)
48 1znw_A Guanylate kinase, GMP k 96.9 0.00058 2E-08 47.8 3.3 33 36-70 18-50 (207)
49 1zp6_A Hypothetical protein AT 96.9 0.00051 1.8E-08 46.6 2.9 32 41-72 11-43 (191)
50 1um8_A ATP-dependent CLP prote 96.9 0.00076 2.6E-08 51.2 4.1 31 38-68 71-101 (376)
51 2f9l_A RAB11B, member RAS onco 96.9 0.00072 2.5E-08 46.3 3.5 25 39-63 5-29 (199)
52 3bos_A Putative DNA replicatio 96.9 0.00056 1.9E-08 47.1 3.0 33 40-72 53-89 (242)
53 3syl_A Protein CBBX; photosynt 96.9 0.00049 1.7E-08 50.1 2.8 27 37-63 65-91 (309)
54 2nzj_A GTP-binding protein REM 96.9 0.00064 2.2E-08 44.6 3.1 24 39-62 4-27 (175)
55 1z0f_A RAB14, member RAS oncog 96.9 0.00067 2.3E-08 44.5 3.2 26 37-62 13-38 (179)
56 2hxs_A RAB-26, RAS-related pro 96.9 0.00066 2.3E-08 44.8 3.1 23 39-61 6-28 (178)
57 3cf0_A Transitional endoplasmi 96.9 0.00095 3.2E-08 49.6 4.3 27 40-66 50-76 (301)
58 1wms_A RAB-9, RAB9, RAS-relate 96.9 0.00073 2.5E-08 44.5 3.2 26 37-62 5-30 (177)
59 2ehv_A Hypothetical protein PH 96.9 0.0018 6E-08 45.3 5.4 37 35-72 27-68 (251)
60 2ce2_X GTPase HRAS; signaling 96.9 0.00061 2.1E-08 43.8 2.8 24 39-62 3-26 (166)
61 4fcw_A Chaperone protein CLPB; 96.8 0.00051 1.7E-08 49.9 2.5 28 38-65 46-73 (311)
62 2iwr_A Centaurin gamma 1; ANK 96.8 0.00067 2.3E-08 45.0 2.9 23 39-61 7-29 (178)
63 1m7b_A RND3/RHOE small GTP-bin 96.8 0.00065 2.2E-08 45.7 2.9 25 37-61 5-29 (184)
64 1g16_A RAS-related protein SEC 96.8 0.00068 2.3E-08 44.1 2.8 24 39-62 3-26 (170)
65 1ojl_A Transcriptional regulat 96.8 0.00062 2.1E-08 51.1 2.9 27 39-65 25-51 (304)
66 1g41_A Heat shock protein HSLU 96.8 0.00042 1.5E-08 55.9 2.1 60 10-69 17-80 (444)
67 4eun_A Thermoresistant glucoki 96.8 0.00089 3.1E-08 46.5 3.5 32 40-72 30-61 (200)
68 3lxx_A GTPase IMAP family memb 96.8 0.0022 7.7E-08 45.4 5.7 28 37-64 27-54 (239)
69 1r8s_A ADP-ribosylation factor 96.8 0.00074 2.5E-08 43.9 2.9 22 40-61 1-22 (164)
70 2zej_A Dardarin, leucine-rich 96.8 0.00064 2.2E-08 46.0 2.7 24 39-62 2-25 (184)
71 3kkq_A RAS-related protein M-R 96.8 0.00083 2.8E-08 44.7 3.1 25 37-61 16-40 (183)
72 2oil_A CATX-8, RAS-related pro 96.8 0.00083 2.8E-08 45.3 3.2 27 36-62 22-48 (193)
73 2pcj_A ABC transporter, lipopr 96.8 0.00051 1.7E-08 49.7 2.2 34 41-74 32-68 (224)
74 3pfi_A Holliday junction ATP-d 96.8 0.00095 3.2E-08 49.4 3.7 56 10-71 31-88 (338)
75 2efe_B Small GTP-binding prote 96.8 0.00087 3E-08 44.3 3.2 26 37-62 10-35 (181)
76 3q72_A GTP-binding protein RAD 96.8 0.00059 2E-08 44.5 2.3 22 39-60 2-23 (166)
77 1x3s_A RAS-related protein RAB 96.8 0.00089 3E-08 44.8 3.2 26 37-62 13-38 (195)
78 2g6b_A RAS-related protein RAB 96.8 0.00086 2.9E-08 44.3 3.1 26 37-62 8-33 (180)
79 2chg_A Replication factor C sm 96.8 0.00065 2.2E-08 45.6 2.5 22 41-62 40-61 (226)
80 3cph_A RAS-related protein SEC 96.8 0.0009 3.1E-08 45.6 3.3 28 34-61 15-42 (213)
81 3q3j_B RHO-related GTP-binding 96.8 0.0009 3.1E-08 46.8 3.3 28 34-61 22-49 (214)
82 3tif_A Uncharacterized ABC tra 96.8 0.0007 2.4E-08 49.4 2.8 34 41-74 33-69 (235)
83 4dsu_A GTPase KRAS, isoform 2B 96.8 0.00093 3.2E-08 44.3 3.2 24 39-62 4-27 (189)
84 1htw_A HI0065; nucleotide-bind 96.8 0.00086 2.9E-08 46.5 3.1 25 41-65 35-59 (158)
85 2fn4_A P23, RAS-related protei 96.8 0.00081 2.8E-08 44.2 2.8 25 38-62 8-32 (181)
86 2zan_A Vacuolar protein sortin 96.8 0.0018 6.2E-08 51.0 5.3 54 10-63 136-191 (444)
87 2onk_A Molybdate/tungstate ABC 96.8 0.00083 2.8E-08 49.4 3.1 34 40-73 25-61 (240)
88 3co5_A Putative two-component 96.8 0.00017 6E-09 48.1 -0.5 31 39-69 27-57 (143)
89 2gf0_A GTP-binding protein DI- 96.8 0.00092 3.1E-08 44.9 3.1 25 37-61 6-30 (199)
90 1pzn_A RAD51, DNA repair and r 96.7 0.0012 3.9E-08 50.9 4.0 38 36-74 129-176 (349)
91 1zd9_A ADP-ribosylation factor 96.7 0.00089 3E-08 45.3 3.0 28 34-61 17-44 (188)
92 3ihw_A Centg3; RAS, centaurin, 96.7 0.001 3.6E-08 45.3 3.4 26 35-60 16-41 (184)
93 1mh1_A RAC1; GTP-binding, GTPa 96.7 0.00098 3.4E-08 44.1 3.1 23 39-61 5-27 (186)
94 2y8e_A RAB-protein 6, GH09086P 96.7 0.00085 2.9E-08 44.0 2.8 23 39-61 14-36 (179)
95 2gj8_A MNME, tRNA modification 96.7 0.00079 2.7E-08 45.4 2.7 24 39-62 4-27 (172)
96 1kgd_A CASK, peripheral plasma 96.7 0.00097 3.3E-08 45.8 3.2 25 41-65 7-31 (180)
97 1oix_A RAS-related protein RAB 96.7 0.00097 3.3E-08 45.7 3.1 26 39-64 29-54 (191)
98 1n0w_A DNA repair protein RAD5 96.7 0.0023 7.7E-08 44.6 5.1 37 36-73 22-68 (243)
99 2lkc_A Translation initiation 96.7 0.001 3.5E-08 43.8 3.1 25 37-61 6-30 (178)
100 2bov_A RAla, RAS-related prote 96.7 0.0011 3.7E-08 44.8 3.3 26 36-61 11-36 (206)
101 1z6g_A Guanylate kinase; struc 96.7 0.0012 4.2E-08 47.0 3.8 29 41-69 25-53 (218)
102 2w58_A DNAI, primosome compone 96.7 0.00092 3.2E-08 46.0 3.0 24 40-63 55-78 (202)
103 2wji_A Ferrous iron transport 96.7 0.00097 3.3E-08 44.4 3.0 23 40-62 4-26 (165)
104 1g6h_A High-affinity branched- 96.7 0.00072 2.5E-08 49.8 2.6 37 37-74 32-71 (257)
105 2atv_A RERG, RAS-like estrogen 96.7 0.0011 3.8E-08 45.0 3.3 26 37-62 26-51 (196)
106 3tw8_B RAS-related protein RAB 96.7 0.00096 3.3E-08 43.8 2.9 24 37-60 7-30 (181)
107 2a9k_A RAS-related protein RAL 96.7 0.0011 3.7E-08 43.8 3.2 25 38-62 17-41 (187)
108 1z06_A RAS-related protein RAB 96.7 0.0011 3.9E-08 44.6 3.3 26 36-61 17-42 (189)
109 1b0u_A Histidine permease; ABC 96.7 0.00077 2.6E-08 49.9 2.6 33 41-73 34-69 (262)
110 2wjg_A FEOB, ferrous iron tran 96.7 0.0012 4.3E-08 44.0 3.4 24 39-62 7-30 (188)
111 3bwd_D RAC-like GTP-binding pr 96.7 0.0011 3.6E-08 43.9 3.0 25 38-62 7-31 (182)
112 3pxi_A Negative regulator of g 96.7 0.0012 4.1E-08 54.9 3.9 45 8-63 180-225 (758)
113 2dyk_A GTP-binding protein; GT 96.7 0.0013 4.3E-08 42.6 3.2 23 40-62 2-24 (161)
114 1vg8_A RAS-related protein RAB 96.7 0.0012 4.2E-08 44.7 3.3 27 36-62 5-31 (207)
115 3lxw_A GTPase IMAP family memb 96.7 0.0033 1.1E-07 45.5 5.7 26 37-62 19-44 (247)
116 3c5c_A RAS-like protein 12; GD 96.7 0.0012 4.3E-08 44.8 3.3 26 36-61 18-43 (187)
117 1qhx_A CPT, protein (chloramph 96.7 0.0015 5.2E-08 43.8 3.6 28 41-68 5-32 (178)
118 3tkl_A RAS-related protein RAB 96.7 0.0012 4.2E-08 44.2 3.2 26 37-62 14-39 (196)
119 2ff7_A Alpha-hemolysin translo 96.7 0.00085 2.9E-08 49.3 2.6 34 41-74 37-73 (247)
120 1ji0_A ABC transporter; ATP bi 96.7 0.00086 2.9E-08 48.9 2.6 34 41-74 34-70 (240)
121 1knq_A Gluconate kinase; ALFA/ 96.7 0.0014 4.8E-08 44.1 3.5 32 40-72 9-40 (175)
122 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.0018 6.1E-08 48.9 4.4 24 40-63 46-69 (322)
123 3con_A GTPase NRAS; structural 96.7 0.0012 4.2E-08 44.2 3.1 23 39-61 21-43 (190)
124 3reg_A RHO-like small GTPase; 96.7 0.0012 4.2E-08 44.6 3.1 27 36-62 20-46 (194)
125 1ksh_A ARF-like protein 2; sma 96.6 0.0012 4.1E-08 44.1 3.1 25 37-61 16-40 (186)
126 3t15_A Ribulose bisphosphate c 96.6 0.00085 2.9E-08 49.9 2.5 35 36-70 33-68 (293)
127 3m6a_A ATP-dependent protease 96.6 0.0012 4.1E-08 53.6 3.6 50 10-66 83-135 (543)
128 3gfo_A Cobalt import ATP-bindi 96.6 0.00088 3E-08 50.4 2.6 34 41-74 36-72 (275)
129 1sgw_A Putative ABC transporte 96.6 0.00091 3.1E-08 48.5 2.6 33 41-73 37-72 (214)
130 1d2n_A N-ethylmaleimide-sensit 96.6 0.0011 3.7E-08 47.9 3.0 27 39-65 64-90 (272)
131 2pze_A Cystic fibrosis transme 96.6 0.0011 3.8E-08 48.0 3.0 31 41-71 36-69 (229)
132 2dr3_A UPF0273 protein PH0284; 96.6 0.0015 5E-08 45.6 3.5 37 36-73 21-61 (247)
133 2fg5_A RAB-22B, RAS-related pr 96.6 0.0011 3.7E-08 45.0 2.8 26 37-62 21-46 (192)
134 2bme_A RAB4A, RAS-related prot 96.6 0.0011 3.9E-08 44.0 2.8 25 37-61 8-32 (186)
135 1zj6_A ADP-ribosylation factor 96.6 0.0011 3.9E-08 44.5 2.8 25 37-61 14-38 (187)
136 2cbz_A Multidrug resistance-as 96.6 0.00085 2.9E-08 49.0 2.3 31 41-71 33-66 (237)
137 2gf9_A RAS-related protein RAB 96.6 0.0014 4.7E-08 44.2 3.2 25 38-62 21-45 (189)
138 2cxx_A Probable GTP-binding pr 96.6 0.00078 2.7E-08 44.8 1.9 23 40-62 2-24 (190)
139 2a5j_A RAS-related protein RAB 96.6 0.0014 4.6E-08 44.4 3.2 27 36-62 18-44 (191)
140 2ixe_A Antigen peptide transpo 96.6 0.00095 3.3E-08 49.8 2.6 33 41-73 47-82 (271)
141 3t5g_A GTP-binding protein RHE 96.6 0.0012 4.1E-08 43.8 2.8 24 38-61 5-28 (181)
142 1l8q_A Chromosomal replication 96.6 0.0013 4.4E-08 48.7 3.2 31 41-71 39-73 (324)
143 1mv5_A LMRA, multidrug resista 96.6 0.0011 3.7E-08 48.4 2.7 34 40-73 29-65 (243)
144 2j41_A Guanylate kinase; GMP, 96.6 0.0012 4.2E-08 45.0 2.9 23 41-63 8-30 (207)
145 2cjw_A GTP-binding protein GEM 96.6 0.0014 4.8E-08 45.0 3.2 23 39-61 6-28 (192)
146 2q3h_A RAS homolog gene family 96.6 0.0013 4.3E-08 44.7 2.9 28 34-61 15-42 (201)
147 2olj_A Amino acid ABC transpor 96.6 0.001 3.5E-08 49.6 2.6 33 41-73 52-87 (263)
148 1zbd_A Rabphilin-3A; G protein 96.6 0.0013 4.5E-08 44.6 3.0 24 39-62 8-31 (203)
149 2ged_A SR-beta, signal recogni 96.6 0.0015 5E-08 43.9 3.2 27 37-63 46-72 (193)
150 3dz8_A RAS-related protein RAB 96.6 0.0024 8.2E-08 43.2 4.2 27 36-62 20-46 (191)
151 2yz2_A Putative ABC transporte 96.6 0.001 3.6E-08 49.3 2.6 33 41-73 35-70 (266)
152 2ihy_A ABC transporter, ATP-bi 96.6 0.0011 3.9E-08 49.7 2.8 36 37-73 46-84 (279)
153 3a00_A Guanylate kinase, GMP k 96.6 0.0013 4.4E-08 45.3 2.9 24 42-65 4-27 (186)
154 1ly1_A Polynucleotide kinase; 96.6 0.0022 7.6E-08 42.6 3.9 30 41-70 4-33 (181)
155 3sop_A Neuronal-specific septi 96.6 0.0012 4.2E-08 49.1 2.9 27 39-65 2-28 (270)
156 2p5s_A RAS and EF-hand domain 96.6 0.0016 5.6E-08 44.4 3.3 27 36-62 25-51 (199)
157 1nrj_B SR-beta, signal recogni 96.6 0.0015 5.1E-08 45.0 3.1 26 37-62 10-35 (218)
158 2f7s_A C25KG, RAS-related prot 96.5 0.0015 5.2E-08 44.9 3.1 26 36-61 22-47 (217)
159 4g1u_C Hemin import ATP-bindin 96.5 0.001 3.6E-08 49.5 2.4 35 41-75 39-76 (266)
160 1njg_A DNA polymerase III subu 96.5 0.0015 5E-08 44.1 3.0 23 41-63 47-69 (250)
161 1vpl_A ABC transporter, ATP-bi 96.5 0.0011 3.9E-08 49.1 2.6 37 37-74 40-79 (256)
162 3llu_A RAS-related GTP-binding 96.5 0.0011 3.6E-08 45.4 2.2 28 36-63 17-44 (196)
163 1moz_A ARL1, ADP-ribosylation 96.5 0.001 3.5E-08 44.1 2.1 24 37-60 16-39 (183)
164 1cke_A CK, MSSA, protein (cyti 96.5 0.0015 5.2E-08 45.4 2.9 32 40-71 6-37 (227)
165 4gp7_A Metallophosphoesterase; 96.5 0.0011 3.7E-08 45.5 2.1 18 41-58 11-28 (171)
166 2bcg_Y Protein YP2, GTP-bindin 96.5 0.0015 5E-08 44.6 2.8 25 38-62 7-31 (206)
167 2fh5_B SR-beta, signal recogni 96.5 0.0015 5.2E-08 44.8 2.9 26 37-62 5-30 (214)
168 3vaa_A Shikimate kinase, SK; s 96.5 0.0018 6.1E-08 45.0 3.2 26 40-65 26-51 (199)
169 2fu5_C RAS-related protein RAB 96.5 0.00092 3.2E-08 44.5 1.6 23 38-60 7-29 (183)
170 3d8b_A Fidgetin-like protein 1 96.5 0.0025 8.5E-08 48.5 4.2 28 39-66 117-144 (357)
171 2qp9_X Vacuolar protein sortin 96.5 0.0015 5.3E-08 49.9 3.1 29 39-67 84-112 (355)
172 2r62_A Cell division protease 96.5 0.0006 2.1E-08 48.9 0.7 25 41-65 46-70 (268)
173 1lvg_A Guanylate kinase, GMP k 96.5 0.0013 4.5E-08 46.1 2.4 24 41-64 6-29 (198)
174 2h17_A ADP-ribosylation factor 96.5 0.0012 4.2E-08 44.2 2.2 28 35-62 17-44 (181)
175 1svi_A GTP-binding protein YSX 96.5 0.0013 4.5E-08 44.2 2.3 26 37-62 21-46 (195)
176 3c8u_A Fructokinase; YP_612366 96.4 0.0016 5.5E-08 45.6 2.8 25 40-64 23-47 (208)
177 1sxj_C Activator 1 40 kDa subu 96.4 0.0014 4.9E-08 49.0 2.6 23 41-63 48-70 (340)
178 3pqc_A Probable GTP-binding pr 96.4 0.002 7E-08 42.8 3.1 27 36-62 20-46 (195)
179 3io5_A Recombination and repai 96.4 0.003 1E-07 49.8 4.5 39 35-75 26-70 (333)
180 2b6h_A ADP-ribosylation factor 96.4 0.0017 5.8E-08 44.4 2.7 37 20-60 14-50 (192)
181 2g3y_A GTP-binding protein GEM 96.4 0.002 6.8E-08 46.0 3.2 26 35-60 33-58 (211)
182 3uk6_A RUVB-like 2; hexameric 96.4 0.0015 5.1E-08 48.6 2.6 50 9-64 45-95 (368)
183 1tf7_A KAIC; homohexamer, hexa 96.4 0.0018 6E-08 52.0 3.2 39 34-73 35-78 (525)
184 2il1_A RAB12; G-protein, GDP, 96.4 0.0019 6.4E-08 43.9 2.9 25 37-61 24-48 (192)
185 2gco_A H9, RHO-related GTP-bin 96.4 0.0018 6.1E-08 44.4 2.8 25 38-62 24-48 (201)
186 1sxj_D Activator 1 41 kDa subu 96.4 0.0015 5.2E-08 48.0 2.5 23 41-63 60-82 (353)
187 1fzq_A ADP-ribosylation factor 96.4 0.0018 6.2E-08 43.7 2.7 25 38-62 15-39 (181)
188 3d31_A Sulfate/molybdate ABC t 96.4 0.0019 6.5E-08 50.3 3.2 34 41-74 28-64 (348)
189 3cbq_A GTP-binding protein REM 96.4 0.0018 6.2E-08 44.6 2.7 25 36-60 20-44 (195)
190 3kb2_A SPBC2 prophage-derived 96.4 0.0022 7.6E-08 42.3 3.0 24 41-64 3-26 (173)
191 2d2e_A SUFC protein; ABC-ATPas 96.4 0.0016 5.3E-08 47.8 2.4 36 37-73 28-68 (250)
192 1m2o_B GTP-binding protein SAR 96.4 0.0017 5.9E-08 44.3 2.5 25 37-61 21-45 (190)
193 1sxj_E Activator 1 40 kDa subu 96.4 0.0015 5.3E-08 48.3 2.4 45 10-64 16-62 (354)
194 3pvs_A Replication-associated 96.4 0.003 1E-07 50.3 4.2 29 40-68 51-79 (447)
195 2bbw_A Adenylate kinase 4, AK4 96.4 0.0019 6.6E-08 46.2 2.9 21 40-60 28-48 (246)
196 4gzl_A RAS-related C3 botulinu 96.4 0.002 7E-08 44.4 2.9 25 37-61 28-52 (204)
197 1via_A Shikimate kinase; struc 96.4 0.0021 7.2E-08 43.4 2.9 25 41-65 6-30 (175)
198 3lw7_A Adenylate kinase relate 96.4 0.0026 8.9E-08 41.5 3.2 27 41-68 3-29 (179)
199 2o52_A RAS-related protein RAB 96.4 0.0019 6.5E-08 44.3 2.7 25 37-61 23-47 (200)
200 1gwn_A RHO-related GTP-binding 96.4 0.002 6.8E-08 44.9 2.8 25 38-62 27-51 (205)
201 1g29_1 MALK, maltose transport 96.4 0.002 6.8E-08 50.5 3.1 35 37-72 28-65 (372)
202 2j0v_A RAC-like GTP-binding pr 96.3 0.002 6.9E-08 44.1 2.8 25 37-61 7-31 (212)
203 2yyz_A Sugar ABC transporter, 96.3 0.002 6.9E-08 50.4 3.1 37 37-74 28-67 (359)
204 2hup_A RAS-related protein RAB 96.3 0.0021 7.3E-08 44.2 2.9 26 37-62 27-52 (201)
205 3t34_A Dynamin-related protein 96.3 0.007 2.4E-07 45.9 6.0 42 41-86 36-79 (360)
206 2atx_A Small GTP binding prote 96.3 0.0022 7.4E-08 43.2 2.9 26 37-62 16-41 (194)
207 3rlf_A Maltose/maltodextrin im 96.3 0.0021 7E-08 50.9 3.1 37 37-74 28-67 (381)
208 2fv8_A H6, RHO-related GTP-bin 96.3 0.0021 7.2E-08 44.2 2.8 24 39-62 25-48 (207)
209 3trf_A Shikimate kinase, SK; a 96.3 0.0026 8.8E-08 43.0 3.2 26 40-65 6-31 (185)
210 1hqc_A RUVB; extended AAA-ATPa 96.3 0.0015 5.1E-08 47.7 2.2 32 40-71 39-71 (324)
211 2ew1_A RAS-related protein RAB 96.3 0.0021 7.3E-08 44.7 2.8 24 38-61 25-48 (201)
212 1ypw_A Transitional endoplasmi 96.3 0.0029 1E-07 53.7 4.1 34 38-71 237-271 (806)
213 1z47_A CYSA, putative ABC-tran 96.3 0.0021 7.3E-08 50.2 3.1 34 41-74 43-79 (355)
214 2ce7_A Cell division protein F 96.3 0.0018 6.1E-08 52.4 2.7 31 41-71 51-82 (476)
215 2qt1_A Nicotinamide riboside k 96.3 0.0041 1.4E-07 43.0 4.2 32 40-71 22-53 (207)
216 1s96_A Guanylate kinase, GMP k 96.3 0.0027 9.4E-08 45.9 3.5 25 41-65 18-42 (219)
217 1v43_A Sugar-binding transport 96.3 0.0022 7.5E-08 50.4 3.1 34 41-74 39-75 (372)
218 2h57_A ADP-ribosylation factor 96.3 0.0019 6.6E-08 43.5 2.5 26 36-61 18-43 (190)
219 3fvq_A Fe(3+) IONS import ATP- 96.3 0.0019 6.5E-08 50.7 2.7 33 41-73 32-67 (359)
220 2it1_A 362AA long hypothetical 96.3 0.0023 7.8E-08 50.1 3.1 34 41-74 31-67 (362)
221 1oxx_K GLCV, glucose, ABC tran 96.3 0.0018 6.2E-08 50.4 2.5 36 37-73 30-68 (353)
222 2x77_A ADP-ribosylation factor 96.3 0.0017 5.9E-08 43.6 2.1 23 38-60 21-43 (189)
223 2j1l_A RHO-related GTP-binding 96.3 0.0022 7.4E-08 44.6 2.7 24 38-61 33-56 (214)
224 2p5t_B PEZT; postsegregational 96.3 0.0034 1.2E-07 45.4 3.8 33 40-72 33-66 (253)
225 4bas_A ADP-ribosylation factor 96.3 0.0025 8.6E-08 42.8 2.9 27 35-61 13-39 (199)
226 3dl0_A Adenylate kinase; phosp 96.3 0.0031 1E-07 43.9 3.4 28 41-68 2-29 (216)
227 3cpj_B GTP-binding protein YPT 96.3 0.0029 9.8E-08 44.1 3.3 26 37-62 11-36 (223)
228 1fnn_A CDC6P, cell division co 96.3 0.0022 7.5E-08 47.5 2.7 24 41-64 46-69 (389)
229 2qi9_C Vitamin B12 import ATP- 96.3 0.002 7E-08 47.6 2.5 36 37-73 25-62 (249)
230 1r6b_X CLPA protein; AAA+, N-t 96.3 0.005 1.7E-07 50.9 5.1 29 39-67 488-516 (758)
231 2qor_A Guanylate kinase; phosp 96.3 0.0028 9.7E-08 44.1 3.1 25 41-65 14-38 (204)
232 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0035 1.2E-07 43.0 3.5 25 37-62 22-46 (235)
233 3tau_A Guanylate kinase, GMP k 96.2 0.0031 1.1E-07 44.3 3.3 28 37-65 7-34 (208)
234 4b4t_K 26S protease regulatory 96.2 0.003 1E-07 50.7 3.5 29 41-69 208-236 (428)
235 2nq2_C Hypothetical ABC transp 96.2 0.002 7E-08 47.5 2.3 28 37-65 30-57 (253)
236 2yc2_C IFT27, small RAB-relate 96.2 0.0012 4.2E-08 44.5 1.0 25 37-61 18-42 (208)
237 3asz_A Uridine kinase; cytidin 96.2 0.0023 7.9E-08 44.2 2.5 25 40-64 7-31 (211)
238 1zuh_A Shikimate kinase; alpha 96.2 0.0034 1.2E-07 42.0 3.2 29 37-65 5-33 (168)
239 1y63_A LMAJ004144AAA protein; 96.2 0.0057 1.9E-07 41.9 4.4 23 40-62 11-33 (184)
240 3uie_A Adenylyl-sulfate kinase 96.2 0.0028 9.7E-08 43.9 2.8 33 40-72 26-62 (200)
241 3b85_A Phosphate starvation-in 96.2 0.0017 6E-08 46.7 1.8 27 37-65 21-47 (208)
242 3lda_A DNA repair protein RAD5 96.2 0.0037 1.3E-07 49.4 3.8 40 34-74 174-223 (400)
243 3tui_C Methionine import ATP-b 96.2 0.0033 1.1E-07 49.6 3.4 38 37-75 53-93 (366)
244 1r6b_X CLPA protein; AAA+, N-t 96.2 0.0045 1.5E-07 51.2 4.4 24 40-63 208-231 (758)
245 3lnc_A Guanylate kinase, GMP k 96.2 0.0025 8.7E-08 45.0 2.5 25 41-65 29-54 (231)
246 2v1u_A Cell division control p 96.2 0.0024 8.2E-08 47.0 2.4 24 40-63 45-68 (387)
247 2if2_A Dephospho-COA kinase; a 96.1 0.0028 9.7E-08 43.6 2.7 22 41-62 3-24 (204)
248 3iij_A Coilin-interacting nucl 96.1 0.0032 1.1E-07 42.6 2.9 29 40-68 12-40 (180)
249 2jaq_A Deoxyguanosine kinase; 96.1 0.0041 1.4E-07 42.1 3.3 25 41-65 2-26 (205)
250 1iqp_A RFCS; clamp loader, ext 96.1 0.0034 1.2E-07 45.4 3.1 42 10-62 27-69 (327)
251 2qgz_A Helicase loader, putati 96.1 0.0032 1.1E-07 47.4 3.0 25 40-64 153-177 (308)
252 1lw7_A Transcriptional regulat 96.1 0.0039 1.3E-07 47.5 3.5 27 39-65 170-196 (365)
253 2xtp_A GTPase IMAP family memb 96.1 0.0032 1.1E-07 45.1 2.8 25 37-61 20-44 (260)
254 3t61_A Gluconokinase; PSI-biol 96.1 0.0032 1.1E-07 43.4 2.7 31 40-71 19-49 (202)
255 3nh6_A ATP-binding cassette SU 96.1 0.0031 1.1E-07 48.2 2.9 36 41-76 82-120 (306)
256 1e6c_A Shikimate kinase; phosp 96.1 0.0041 1.4E-07 41.3 3.1 25 41-65 4-28 (173)
257 2qby_B CDC6 homolog 3, cell di 96.1 0.0052 1.8E-07 45.6 4.0 22 41-62 47-68 (384)
258 4b4t_M 26S protease regulatory 96.1 0.0037 1.3E-07 50.3 3.4 28 41-68 217-244 (434)
259 3cm0_A Adenylate kinase; ATP-b 96.1 0.0038 1.3E-07 42.1 3.0 23 40-62 5-27 (186)
260 1kht_A Adenylate kinase; phosp 96.1 0.0039 1.3E-07 41.8 3.0 25 40-64 4-28 (192)
261 2pt5_A Shikimate kinase, SK; a 96.1 0.0045 1.5E-07 41.0 3.2 25 41-65 2-26 (168)
262 2vli_A Antibiotic resistance p 96.1 0.0046 1.6E-07 41.4 3.3 28 41-68 7-34 (183)
263 2ghi_A Transport protein; mult 96.0 0.0026 8.8E-08 47.0 2.2 32 41-72 48-81 (260)
264 3fb4_A Adenylate kinase; psych 96.0 0.0036 1.2E-07 43.4 2.8 28 41-68 2-29 (216)
265 1f6b_A SAR1; gtpases, N-termin 96.0 0.0027 9.2E-08 43.7 2.1 22 39-60 25-46 (198)
266 4djt_A GTP-binding nuclear pro 96.0 0.0024 8.3E-08 43.9 1.9 25 36-60 8-32 (218)
267 2qu8_A Putative nucleolar GTP- 96.0 0.0034 1.2E-07 44.0 2.6 24 38-61 28-51 (228)
268 4b4t_L 26S protease subunit RP 96.0 0.0042 1.4E-07 49.9 3.4 28 41-68 217-244 (437)
269 4dkx_A RAS-related protein RAB 96.0 0.0046 1.6E-07 44.3 3.3 27 39-65 13-40 (216)
270 1pui_A ENGB, probable GTP-bind 96.0 0.0028 9.5E-08 43.2 2.0 29 35-63 22-50 (210)
271 1jjv_A Dephospho-COA kinase; P 96.0 0.0043 1.5E-07 42.8 3.0 23 40-62 3-25 (206)
272 1nks_A Adenylate kinase; therm 96.0 0.0038 1.3E-07 41.8 2.6 24 41-64 3-26 (194)
273 3kta_A Chromosome segregation 96.0 0.0041 1.4E-07 42.0 2.8 24 41-64 28-51 (182)
274 3k53_A Ferrous iron transport 96.0 0.0037 1.3E-07 45.5 2.7 24 39-62 3-26 (271)
275 2c9o_A RUVB-like 1; hexameric 96.0 0.0055 1.9E-07 48.2 3.8 49 10-64 39-88 (456)
276 2qnr_A Septin-2, protein NEDD5 95.9 0.0032 1.1E-07 47.3 2.3 27 39-65 18-46 (301)
277 2i3b_A HCR-ntpase, human cance 95.9 0.0044 1.5E-07 43.9 2.9 23 41-63 3-25 (189)
278 2qby_A CDC6 homolog 1, cell di 95.9 0.0032 1.1E-07 46.2 2.2 32 41-72 47-85 (386)
279 1gvn_B Zeta; postsegregational 95.9 0.0057 2E-07 45.6 3.6 32 40-71 34-66 (287)
280 2z4s_A Chromosomal replication 95.9 0.0028 9.6E-08 50.0 2.0 24 40-63 131-154 (440)
281 3a1s_A Iron(II) transport prot 95.9 0.0045 1.5E-07 45.4 3.0 24 39-62 5-28 (258)
282 2rhm_A Putative kinase; P-loop 95.9 0.0038 1.3E-07 42.1 2.4 23 40-62 6-28 (193)
283 3gj0_A GTP-binding nuclear pro 95.9 0.0027 9.1E-08 44.0 1.6 26 37-62 13-39 (221)
284 4b4t_J 26S protease regulatory 95.9 0.005 1.7E-07 49.3 3.4 28 41-68 184-211 (405)
285 2chq_A Replication factor C sm 95.9 0.004 1.4E-07 44.8 2.6 42 10-62 19-61 (319)
286 1qvr_A CLPB protein; coiled co 95.9 0.0034 1.2E-07 53.1 2.4 23 41-63 193-215 (854)
287 2zu0_C Probable ATP-dependent 95.9 0.0039 1.3E-07 46.2 2.4 36 37-73 45-85 (267)
288 2iyv_A Shikimate kinase, SK; t 95.9 0.0053 1.8E-07 41.5 3.0 24 41-64 4-27 (184)
289 1tev_A UMP-CMP kinase; ploop, 95.8 0.0064 2.2E-07 40.7 3.2 25 40-64 4-28 (196)
290 2cvh_A DNA repair and recombin 95.8 0.0047 1.6E-07 42.4 2.6 37 36-73 18-55 (220)
291 3hu3_A Transitional endoplasmi 95.8 0.0077 2.6E-07 48.6 4.2 28 39-66 238-265 (489)
292 3t5d_A Septin-7; GTP-binding p 95.8 0.0043 1.5E-07 45.3 2.5 22 38-59 7-28 (274)
293 3b1v_A Ferrous iron uptake tra 95.8 0.0055 1.9E-07 45.5 3.1 24 39-62 3-26 (272)
294 3th5_A RAS-related C3 botulinu 94.8 0.0015 5.2E-08 44.6 0.0 24 37-60 28-51 (204)
295 4dhe_A Probable GTP-binding pr 95.8 0.0036 1.2E-07 43.1 1.9 25 38-62 28-52 (223)
296 2bbs_A Cystic fibrosis transme 95.8 0.0033 1.1E-07 47.5 1.9 25 41-65 66-90 (290)
297 2pjz_A Hypothetical protein ST 95.8 0.0047 1.6E-07 46.0 2.6 32 41-72 32-65 (263)
298 2v9p_A Replication protein E1; 95.8 0.0056 1.9E-07 47.0 3.1 23 41-63 128-150 (305)
299 2hf9_A Probable hydrogenase ni 95.8 0.006 2.1E-07 42.2 3.0 26 39-64 38-64 (226)
300 2pez_A Bifunctional 3'-phospho 95.8 0.011 3.8E-07 39.9 4.3 23 41-63 7-29 (179)
301 2zts_A Putative uncharacterize 95.8 0.015 5.2E-07 40.3 5.1 37 35-72 27-68 (251)
302 2c95_A Adenylate kinase 1; tra 95.8 0.0062 2.1E-07 41.1 3.0 26 40-65 10-35 (196)
303 4e22_A Cytidylate kinase; P-lo 95.8 0.0077 2.6E-07 43.7 3.6 32 40-71 28-59 (252)
304 3pxi_A Negative regulator of g 95.8 0.0047 1.6E-07 51.4 2.7 24 40-63 522-545 (758)
305 1tf7_A KAIC; homohexamer, hexa 95.8 0.0066 2.3E-07 48.6 3.5 38 35-73 278-319 (525)
306 1aky_A Adenylate kinase; ATP:A 95.7 0.0065 2.2E-07 42.5 3.1 26 40-65 5-30 (220)
307 3r7w_A Gtpase1, GTP-binding pr 95.7 0.0063 2.1E-07 45.5 3.2 24 38-61 2-25 (307)
308 2cdn_A Adenylate kinase; phosp 95.7 0.0071 2.4E-07 41.6 3.2 29 40-68 21-49 (201)
309 3i8s_A Ferrous iron transport 95.7 0.0053 1.8E-07 45.2 2.7 24 39-62 3-26 (274)
310 3te6_A Regulatory protein SIR3 95.7 0.006 2.1E-07 47.0 3.1 34 40-73 46-90 (318)
311 1sxj_B Activator 1 37 kDa subu 95.7 0.0051 1.8E-07 44.3 2.5 22 41-62 44-65 (323)
312 2plr_A DTMP kinase, probable t 95.7 0.0063 2.1E-07 41.4 2.8 25 40-64 5-29 (213)
313 1ltq_A Polynucleotide kinase; 95.7 0.0095 3.2E-07 43.3 3.9 30 41-70 4-33 (301)
314 1qf9_A UMP/CMP kinase, protein 95.7 0.0068 2.3E-07 40.5 2.9 26 40-65 7-32 (194)
315 1mky_A Probable GTP-binding pr 95.7 0.0064 2.2E-07 47.6 3.2 25 38-62 179-203 (439)
316 2eyu_A Twitching motility prot 95.7 0.0058 2E-07 45.2 2.8 33 40-72 26-62 (261)
317 1zd8_A GTP:AMP phosphotransfer 95.7 0.0075 2.6E-07 42.4 3.2 26 40-65 8-33 (227)
318 1e4v_A Adenylate kinase; trans 95.7 0.0054 1.9E-07 42.8 2.4 28 41-68 2-29 (214)
319 2yvu_A Probable adenylyl-sulfa 95.7 0.0073 2.5E-07 41.1 3.0 25 40-64 14-38 (186)
320 1cr0_A DNA primase/helicase; R 95.7 0.0053 1.8E-07 44.9 2.5 28 35-63 32-59 (296)
321 2qag_C Septin-7; cell cycle, c 95.7 0.0056 1.9E-07 48.7 2.8 25 39-63 31-55 (418)
322 2aka_B Dynamin-1; fusion prote 95.7 0.0046 1.6E-07 44.7 2.1 24 38-61 25-48 (299)
323 2qen_A Walker-type ATPase; unk 95.6 0.012 4.2E-07 42.6 4.3 32 41-73 33-64 (350)
324 4b4t_I 26S protease regulatory 95.6 0.0074 2.5E-07 48.9 3.5 28 41-68 218-245 (437)
325 3aez_A Pantothenate kinase; tr 95.6 0.0041 1.4E-07 47.3 1.8 27 39-65 90-116 (312)
326 2qm8_A GTPase/ATPase; G protei 95.6 0.012 4E-07 45.0 4.3 36 37-72 53-91 (337)
327 1ypw_A Transitional endoplasmi 95.6 0.0033 1.1E-07 53.3 1.4 29 37-65 509-537 (806)
328 2bwj_A Adenylate kinase 5; pho 95.6 0.007 2.4E-07 40.9 2.7 25 40-64 13-37 (199)
329 2xb4_A Adenylate kinase; ATP-b 95.6 0.0073 2.5E-07 42.8 2.9 29 41-69 2-30 (223)
330 4b4t_H 26S protease regulatory 95.6 0.0074 2.5E-07 49.3 3.3 28 41-68 245-272 (467)
331 1h65_A Chloroplast outer envel 95.6 0.0065 2.2E-07 44.1 2.7 25 37-61 37-61 (270)
332 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.0043 1.5E-07 47.4 1.7 32 41-72 173-207 (330)
333 1ak2_A Adenylate kinase isoenz 95.6 0.0077 2.6E-07 42.8 2.9 30 40-69 17-46 (233)
334 2gza_A Type IV secretion syste 95.5 0.0056 1.9E-07 47.1 2.3 33 40-72 176-211 (361)
335 1ega_A Protein (GTP-binding pr 95.5 0.0071 2.4E-07 45.2 2.8 22 41-62 10-31 (301)
336 2jeo_A Uridine-cytidine kinase 95.5 0.0075 2.6E-07 43.2 2.8 24 40-63 26-49 (245)
337 3ney_A 55 kDa erythrocyte memb 95.5 0.01 3.4E-07 42.9 3.5 28 37-65 18-45 (197)
338 2qag_B Septin-6, protein NEDD5 95.5 0.0066 2.2E-07 48.8 2.6 26 37-62 39-65 (427)
339 2pbr_A DTMP kinase, thymidylat 95.5 0.009 3.1E-07 40.0 3.0 23 41-63 2-24 (195)
340 3tlx_A Adenylate kinase 2; str 95.5 0.0092 3.1E-07 43.0 3.2 32 39-70 29-60 (243)
341 1uf9_A TT1252 protein; P-loop, 95.5 0.013 4.4E-07 39.7 3.7 23 40-62 9-31 (203)
342 1ukz_A Uridylate kinase; trans 95.5 0.012 4E-07 40.4 3.5 27 39-65 15-41 (203)
343 3hr8_A Protein RECA; alpha and 95.5 0.0063 2.2E-07 47.6 2.4 39 35-74 58-100 (356)
344 1m7g_A Adenylylsulfate kinase; 95.5 0.0074 2.5E-07 42.1 2.5 32 40-71 26-62 (211)
345 1sxj_A Activator 1 95 kDa subu 95.5 0.012 4E-07 47.1 4.0 26 40-65 78-103 (516)
346 2z0h_A DTMP kinase, thymidylat 95.4 0.012 4E-07 39.8 3.4 23 41-63 2-24 (197)
347 2v54_A DTMP kinase, thymidylat 95.4 0.01 3.4E-07 40.4 3.0 24 40-63 5-28 (204)
348 2yv5_A YJEQ protein; hydrolase 95.4 0.0094 3.2E-07 44.7 3.1 27 37-65 164-190 (302)
349 1udx_A The GTP-binding protein 95.4 0.021 7.3E-07 45.3 5.3 24 41-64 159-182 (416)
350 3jvv_A Twitching mobility prot 95.4 0.0052 1.8E-07 47.7 1.7 25 41-65 125-149 (356)
351 3gd7_A Fusion complex of cysti 95.4 0.0054 1.8E-07 48.5 1.8 34 41-74 49-84 (390)
352 2wkq_A NPH1-1, RAS-related C3 95.4 0.0098 3.3E-07 43.1 3.0 26 36-61 152-177 (332)
353 3szr_A Interferon-induced GTP- 95.4 0.022 7.7E-07 46.8 5.5 41 42-86 48-89 (608)
354 1u0l_A Probable GTPase ENGC; p 95.4 0.0069 2.4E-07 45.3 2.2 28 37-65 168-195 (301)
355 2obl_A ESCN; ATPase, hydrolase 95.4 0.011 3.9E-07 45.6 3.5 28 37-65 70-97 (347)
356 3be4_A Adenylate kinase; malar 95.3 0.0089 3E-07 42.0 2.6 26 40-65 6-31 (217)
357 3l0i_B RAS-related protein RAB 95.3 0.0031 1.1E-07 43.0 0.2 24 37-60 31-54 (199)
358 3iby_A Ferrous iron transport 95.3 0.0079 2.7E-07 44.1 2.4 22 41-62 3-24 (256)
359 3def_A T7I23.11 protein; chlor 95.3 0.0088 3E-07 43.3 2.6 24 38-61 35-58 (262)
360 1rj9_A FTSY, signal recognitio 95.3 0.012 4.2E-07 44.5 3.5 38 37-75 101-141 (304)
361 2npi_A Protein CLP1; CLP1-PCF1 95.3 0.006 2E-07 49.0 1.7 34 37-71 137-175 (460)
362 1yqt_A RNAse L inhibitor; ATP- 95.3 0.0098 3.4E-07 48.3 3.0 29 36-65 45-73 (538)
363 1wf3_A GTP-binding protein; GT 95.3 0.0095 3.2E-07 44.8 2.8 21 41-61 9-29 (301)
364 2dpy_A FLII, flagellum-specifi 95.3 0.012 4.2E-07 46.8 3.5 35 37-72 156-193 (438)
365 2oap_1 GSPE-2, type II secreti 95.2 0.0074 2.5E-07 49.0 2.1 25 41-65 262-286 (511)
366 1ex7_A Guanylate kinase; subst 95.2 0.017 5.8E-07 41.1 3.8 26 42-67 4-29 (186)
367 2ewv_A Twitching motility prot 95.2 0.0066 2.2E-07 47.1 1.7 33 40-72 137-173 (372)
368 3b5x_A Lipid A export ATP-bind 95.2 0.013 4.4E-07 47.6 3.5 34 41-74 371-407 (582)
369 3sr0_A Adenylate kinase; phosp 95.2 0.012 3.9E-07 42.3 2.9 24 41-64 2-25 (206)
370 2wsm_A Hydrogenase expression/ 95.2 0.011 3.6E-07 40.8 2.6 24 38-61 29-52 (221)
371 1jwy_B Dynamin A GTPase domain 95.2 0.0094 3.2E-07 43.5 2.5 24 39-62 24-47 (315)
372 2wwf_A Thymidilate kinase, put 95.2 0.011 3.6E-07 40.5 2.6 23 40-62 11-33 (212)
373 2ze6_A Isopentenyl transferase 95.2 0.012 4.1E-07 42.8 3.0 30 41-71 3-32 (253)
374 1zak_A Adenylate kinase; ATP:A 95.2 0.0095 3.2E-07 41.7 2.4 25 40-64 6-30 (222)
375 2www_A Methylmalonic aciduria 95.2 0.014 4.8E-07 44.7 3.5 25 38-62 73-97 (349)
376 1sq5_A Pantothenate kinase; P- 95.2 0.0082 2.8E-07 44.9 2.1 25 40-64 81-105 (308)
377 1nlf_A Regulatory protein REPA 95.1 0.0093 3.2E-07 43.4 2.2 25 36-61 28-52 (279)
378 2fna_A Conserved hypothetical 95.1 0.016 5.5E-07 42.0 3.4 33 41-73 32-65 (357)
379 1tue_A Replication protein E1; 95.1 0.013 4.3E-07 43.5 2.9 23 41-63 60-82 (212)
380 3nwj_A ATSK2; P loop, shikimat 95.1 0.012 4.2E-07 43.5 2.8 29 40-68 49-77 (250)
381 1nn5_A Similar to deoxythymidy 95.1 0.012 4.2E-07 40.2 2.6 23 40-62 10-32 (215)
382 4ag6_A VIRB4 ATPase, type IV s 95.1 0.012 3.9E-07 45.0 2.7 27 36-62 32-58 (392)
383 3cf2_A TER ATPase, transitiona 95.1 0.017 5.7E-07 49.8 4.0 30 39-68 238-267 (806)
384 1tq4_A IIGP1, interferon-induc 95.1 0.011 3.8E-07 47.0 2.7 26 40-65 70-95 (413)
385 1p9r_A General secretion pathw 95.1 0.01 3.5E-07 47.1 2.5 33 41-73 169-204 (418)
386 2qag_A Septin-2, protein NEDD5 95.0 0.01 3.5E-07 45.7 2.3 23 39-61 37-59 (361)
387 1jr3_A DNA polymerase III subu 95.0 0.013 4.4E-07 43.3 2.8 23 41-63 40-62 (373)
388 1rz3_A Hypothetical protein rb 95.0 0.012 4.1E-07 40.9 2.5 24 40-63 23-46 (201)
389 2qtf_A Protein HFLX, GTP-bindi 95.0 0.0085 2.9E-07 46.4 1.9 28 35-62 174-202 (364)
390 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.013 4.6E-07 42.5 2.8 23 40-62 5-27 (260)
391 3b60_A Lipid A export ATP-bind 95.0 0.011 3.9E-07 47.9 2.6 34 41-74 371-407 (582)
392 2yl4_A ATP-binding cassette SU 95.0 0.011 3.6E-07 48.2 2.4 35 41-75 372-409 (595)
393 1u0j_A DNA replication protein 95.0 0.016 5.5E-07 44.0 3.3 25 41-65 106-130 (267)
394 1ni3_A YCHF GTPase, YCHF GTP-b 95.0 0.014 4.8E-07 46.1 3.0 27 35-61 16-42 (392)
395 1svm_A Large T antigen; AAA+ f 95.0 0.016 5.5E-07 45.4 3.3 28 40-67 170-197 (377)
396 3e70_C DPA, signal recognition 94.9 0.016 5.5E-07 44.5 3.2 61 13-74 100-167 (328)
397 3geh_A MNME, tRNA modification 94.9 0.011 3.7E-07 47.4 2.3 28 34-61 219-246 (462)
398 1puj_A YLQF, conserved hypothe 94.9 0.014 4.9E-07 43.5 2.8 25 37-61 118-142 (282)
399 3ake_A Cytidylate kinase; CMP 94.9 0.019 6.5E-07 39.0 3.2 28 41-68 4-31 (208)
400 1f2t_A RAD50 ABC-ATPase; DNA d 94.9 0.015 5.2E-07 39.3 2.7 22 41-62 25-46 (149)
401 1w5s_A Origin recognition comp 94.9 0.015 5E-07 43.4 2.8 24 40-63 51-76 (412)
402 1v5w_A DMC1, meiotic recombina 94.9 0.029 9.9E-07 42.7 4.5 39 35-74 119-167 (343)
403 1vht_A Dephospho-COA kinase; s 94.9 0.019 6.6E-07 39.9 3.2 23 40-62 5-27 (218)
404 3c5h_A Glucocorticoid receptor 94.9 0.018 6.3E-07 41.6 3.2 26 36-61 16-50 (255)
405 1jal_A YCHF protein; nucleotid 94.9 0.016 5.5E-07 45.5 3.0 23 40-62 3-25 (363)
406 2ohf_A Protein OLA1, GTP-bindi 94.8 0.013 4.5E-07 46.6 2.5 28 35-62 18-45 (396)
407 3o47_A ADP-ribosylation factor 94.8 0.014 4.7E-07 44.2 2.5 25 36-60 162-186 (329)
408 3dpu_A RAB family protein; roc 94.8 0.021 7.1E-07 45.7 3.7 26 36-61 38-63 (535)
409 3r20_A Cytidylate kinase; stru 94.8 0.017 5.7E-07 42.6 2.9 27 39-65 9-35 (233)
410 2f1r_A Molybdopterin-guanine d 94.8 0.012 4E-07 41.2 1.9 25 41-65 4-28 (171)
411 2vp4_A Deoxynucleoside kinase; 94.8 0.015 5.1E-07 41.3 2.5 35 36-72 18-52 (230)
412 2z43_A DNA repair and recombin 94.8 0.027 9.2E-07 42.3 4.0 39 35-74 104-152 (324)
413 3lvq_E ARF-GAP with SH3 domain 94.8 0.019 6.6E-07 45.0 3.3 26 37-62 320-345 (497)
414 2hjg_A GTP-binding protein ENG 94.7 0.019 6.6E-07 44.8 3.1 25 38-62 174-198 (436)
415 2r8r_A Sensor protein; KDPD, P 94.7 0.024 8.3E-07 42.2 3.5 29 36-64 3-32 (228)
416 1q3t_A Cytidylate kinase; nucl 94.7 0.02 6.7E-07 40.7 2.9 31 41-71 18-48 (236)
417 2i1q_A DNA repair and recombin 94.7 0.024 8.1E-07 42.1 3.5 24 36-60 96-119 (322)
418 3b9q_A Chloroplast SRP recepto 94.7 0.062 2.1E-06 40.5 5.8 36 40-75 101-139 (302)
419 2rcn_A Probable GTPase ENGC; Y 94.7 0.015 5.2E-07 45.5 2.5 27 37-64 214-240 (358)
420 3iev_A GTP-binding protein ERA 94.7 0.019 6.3E-07 43.0 2.8 22 40-61 11-32 (308)
421 2dby_A GTP-binding protein; GD 94.6 0.015 5.3E-07 45.4 2.4 23 40-62 2-24 (368)
422 3euj_A Chromosome partition pr 94.6 0.016 5.6E-07 47.1 2.5 34 40-73 30-66 (483)
423 3umf_A Adenylate kinase; rossm 94.6 0.02 6.8E-07 41.7 2.8 23 41-63 31-53 (217)
424 3cnl_A YLQF, putative uncharac 94.6 0.016 5.5E-07 42.8 2.3 23 40-62 100-122 (262)
425 4aby_A DNA repair protein RECN 94.6 0.0095 3.3E-07 45.3 1.1 24 41-64 62-85 (415)
426 1gtv_A TMK, thymidylate kinase 94.6 0.0096 3.3E-07 40.8 1.0 24 41-64 2-25 (214)
427 2e87_A Hypothetical protein PH 94.5 0.02 6.9E-07 43.5 2.8 26 37-62 165-190 (357)
428 3tqc_A Pantothenate kinase; bi 94.5 0.021 7E-07 44.0 2.9 27 38-64 91-117 (321)
429 3qf4_B Uncharacterized ABC tra 94.5 0.017 5.8E-07 47.2 2.5 35 41-75 383-420 (598)
430 1zcb_A G alpha I/13; GTP-bindi 94.5 0.023 7.7E-07 44.2 3.1 28 33-60 27-54 (362)
431 3u61_B DNA polymerase accessor 94.5 0.029 1E-06 41.1 3.5 31 41-71 50-81 (324)
432 1yqt_A RNAse L inhibitor; ATP- 94.5 0.022 7.4E-07 46.3 3.0 28 37-65 311-338 (538)
433 3ozx_A RNAse L inhibitor; ATP 94.5 0.016 5.5E-07 47.2 2.3 29 36-65 23-51 (538)
434 1bif_A 6-phosphofructo-2-kinas 94.4 0.025 8.6E-07 44.6 3.2 24 38-61 38-61 (469)
435 3bh0_A DNAB-like replicative h 94.4 0.029 1E-06 42.1 3.4 37 35-72 65-105 (315)
436 3gee_A MNME, tRNA modification 94.4 0.016 5.6E-07 46.5 2.2 28 34-61 228-255 (476)
437 3j16_B RLI1P; ribosome recycli 94.4 0.021 7.1E-07 47.4 2.8 28 37-65 102-129 (608)
438 1qvr_A CLPB protein; coiled co 94.4 0.018 6.2E-07 48.7 2.5 26 39-64 588-613 (854)
439 2yhs_A FTSY, cell division pro 94.4 0.063 2.1E-06 44.1 5.6 59 13-73 268-330 (503)
440 3cf2_A TER ATPase, transitiona 94.4 0.035 1.2E-06 47.8 4.3 29 40-68 512-540 (806)
441 2vhj_A Ntpase P4, P4; non- hyd 94.4 0.026 8.9E-07 44.2 3.2 38 33-71 118-156 (331)
442 1qhl_A Protein (cell division 94.4 0.013 4.6E-07 42.9 1.4 24 42-65 30-53 (227)
443 4a9a_A Ribosome-interacting GT 94.4 0.028 9.4E-07 44.3 3.3 28 35-62 68-95 (376)
444 1wxq_A GTP-binding protein; st 94.3 0.018 6.1E-07 45.2 2.2 23 40-62 1-23 (397)
445 1xzp_A Probable tRNA modificat 94.3 0.011 3.9E-07 47.6 1.0 28 35-62 239-266 (482)
446 1uj2_A Uridine-cytidine kinase 94.3 0.038 1.3E-06 39.7 3.7 27 38-64 21-47 (252)
447 3bk7_A ABC transporter ATP-bin 94.3 0.02 7E-07 47.4 2.6 29 36-65 115-143 (607)
448 3ozx_A RNAse L inhibitor; ATP 94.3 0.019 6.5E-07 46.8 2.3 25 41-65 296-320 (538)
449 3bk7_A ABC transporter ATP-bin 94.3 0.025 8.6E-07 46.8 3.0 28 37-65 381-408 (607)
450 4eaq_A DTMP kinase, thymidylat 94.2 0.036 1.2E-06 39.9 3.4 25 40-64 27-51 (229)
451 2grj_A Dephospho-COA kinase; T 94.2 0.036 1.2E-06 39.2 3.3 27 36-62 9-35 (192)
452 2h92_A Cytidylate kinase; ross 94.2 0.039 1.3E-06 38.1 3.4 32 40-71 4-35 (219)
453 4dcu_A GTP-binding protein ENG 94.1 0.026 8.9E-07 44.3 2.7 22 40-61 24-45 (456)
454 4a82_A Cystic fibrosis transme 94.1 0.014 4.9E-07 47.3 1.2 35 41-75 369-406 (578)
455 2zr9_A Protein RECA, recombina 94.1 0.047 1.6E-06 42.0 4.1 39 35-74 58-100 (349)
456 3qf4_A ABC transporter, ATP-bi 94.1 0.021 7.3E-07 46.5 2.2 35 41-75 371-408 (587)
457 3qks_A DNA double-strand break 94.0 0.03 1E-06 39.5 2.7 22 41-62 25-46 (203)
458 2x2e_A Dynamin-1; nitration, h 94.0 0.017 5.9E-07 43.8 1.4 22 40-61 32-53 (353)
459 1t9h_A YLOQ, probable GTPase E 94.0 0.01 3.5E-07 45.5 0.1 24 40-63 174-197 (307)
460 1mky_A Probable GTP-binding pr 93.9 0.029 9.9E-07 43.8 2.6 21 41-61 3-23 (439)
461 3sjy_A Translation initiation 93.9 0.03 1E-06 43.2 2.6 25 37-61 6-30 (403)
462 2r6a_A DNAB helicase, replicat 93.9 0.036 1.2E-06 43.5 3.1 37 35-72 200-241 (454)
463 2hjg_A GTP-binding protein ENG 93.8 0.032 1.1E-06 43.5 2.7 22 40-61 4-25 (436)
464 2og2_A Putative signal recogni 93.8 0.035 1.2E-06 43.3 2.9 35 40-74 158-195 (359)
465 2j69_A Bacterial dynamin-like 93.8 0.038 1.3E-06 46.2 3.2 26 36-61 66-91 (695)
466 2ga8_A Hypothetical 39.9 kDa p 93.8 0.039 1.3E-06 43.6 3.1 25 40-64 25-49 (359)
467 3upu_A ATP-dependent DNA helic 93.7 0.038 1.3E-06 43.3 3.0 23 41-63 47-69 (459)
468 3cr8_A Sulfate adenylyltranfer 93.7 0.044 1.5E-06 45.0 3.5 25 40-64 370-394 (552)
469 3qf7_A RAD50; ABC-ATPase, ATPa 93.7 0.034 1.2E-06 42.8 2.7 22 40-62 25-46 (365)
470 1odf_A YGR205W, hypothetical 3 93.7 0.039 1.3E-06 41.4 2.9 27 39-65 31-57 (290)
471 3j16_B RLI1P; ribosome recycli 93.7 0.035 1.2E-06 46.0 2.8 26 41-66 380-405 (608)
472 1w1w_A Structural maintenance 93.7 0.042 1.4E-06 42.6 3.1 25 41-65 28-52 (430)
473 1u94_A RECA protein, recombina 93.6 0.057 2E-06 41.8 3.8 39 35-74 60-102 (356)
474 1q57_A DNA primase/helicase; d 93.6 0.066 2.2E-06 42.3 4.2 38 35-73 239-281 (503)
475 2f6r_A COA synthase, bifunctio 93.6 0.048 1.6E-06 40.3 3.1 25 38-62 74-98 (281)
476 2c78_A Elongation factor TU-A; 93.5 0.05 1.7E-06 41.9 3.3 27 36-62 8-34 (405)
477 3qkt_A DNA double-strand break 93.5 0.041 1.4E-06 41.5 2.7 20 40-60 25-44 (339)
478 1d2e_A Elongation factor TU (E 93.4 0.054 1.9E-06 41.8 3.3 24 39-62 3-26 (397)
479 3p32_A Probable GTPase RV1496/ 93.3 0.065 2.2E-06 40.7 3.6 24 38-61 78-101 (355)
480 1a5t_A Delta prime, HOLB; zinc 93.2 0.045 1.5E-06 41.1 2.4 21 41-61 26-46 (334)
481 1e69_A Chromosome segregation 93.1 0.047 1.6E-06 40.8 2.5 23 41-63 26-48 (322)
482 2p67_A LAO/AO transport system 93.1 0.065 2.2E-06 40.6 3.3 24 39-62 56-79 (341)
483 3p26_A Elongation factor 1 alp 93.0 0.061 2.1E-06 42.6 3.2 25 37-61 31-55 (483)
484 3zvl_A Bifunctional polynucleo 93.0 0.043 1.5E-06 42.8 2.2 23 40-62 259-281 (416)
485 2orw_A Thymidine kinase; TMTK, 92.9 0.055 1.9E-06 37.7 2.5 22 41-62 5-27 (184)
486 1np6_A Molybdopterin-guanine d 92.9 0.066 2.3E-06 37.4 2.9 22 41-62 8-29 (174)
487 3ohm_A Guanine nucleotide-bind 92.8 0.075 2.6E-06 41.0 3.3 29 34-62 2-30 (327)
488 2ius_A DNA translocase FTSK; n 92.8 0.045 1.5E-06 44.8 2.1 25 36-60 164-188 (512)
489 2ocp_A DGK, deoxyguanosine kin 92.8 0.091 3.1E-06 37.2 3.5 26 40-65 3-28 (241)
490 1c9k_A COBU, adenosylcobinamid 92.8 0.084 2.9E-06 37.7 3.3 29 42-70 2-30 (180)
491 2q6t_A DNAB replication FORK h 92.7 0.06 2E-06 42.2 2.7 37 35-72 197-238 (444)
492 1xp8_A RECA protein, recombina 92.6 0.12 3.9E-06 40.3 4.1 40 34-74 70-113 (366)
493 1lnz_A SPO0B-associated GTP-bi 92.6 0.051 1.7E-06 41.8 2.1 22 41-62 160-181 (342)
494 3e1s_A Exodeoxyribonuclease V, 92.5 0.076 2.6E-06 43.5 3.1 23 40-62 205-227 (574)
495 1ny5_A Transcriptional regulat 92.4 0.076 2.6E-06 41.0 2.8 28 38-65 159-186 (387)
496 2r2a_A Uncharacterized protein 92.4 0.11 3.8E-06 37.0 3.6 31 41-71 7-46 (199)
497 1cip_A Protein (guanine nucleo 92.4 0.094 3.2E-06 40.6 3.3 30 33-62 26-55 (353)
498 1e9r_A Conjugal transfer prote 92.3 0.06 2.1E-06 41.4 2.2 23 38-60 52-74 (437)
499 2o5v_A DNA replication and rep 92.3 0.08 2.7E-06 41.2 2.9 23 41-63 28-50 (359)
500 3crm_A TRNA delta(2)-isopenten 92.3 0.12 4.1E-06 40.0 3.9 30 41-71 7-36 (323)
No 1
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.73 E-value=2e-18 Score=142.27 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=73.9
Q ss_pred chhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHH-HHhCCceEEEeecccCCCCceEEEEec
Q psy9645 10 RTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYM-EKIGPRAIFTTGQGASAVGLTAYVGKH 86 (98)
Q Consensus 10 ~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~-~~l~prsv~~sG~~ss~~GLTasv~r~ 86 (98)
.+|++++|+| |+|+||.++ .|+++|+||+|+||+ ||+|++++ .+++||++|++|..++.+|||++ .++
T Consensus 215 I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s-~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV-LKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE-EEE
T ss_pred cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE-EEc
Confidence 8999999999 999999876 899999999999999 99999999 99999999999999999999999 888
Q ss_pred CCCCceEEecCC
Q psy9645 87 PTTKEWTVEADI 98 (98)
Q Consensus 87 ~~~~ew~leaGA 98 (98)
+ +| |.+++|+
T Consensus 286 ~-tG-~~~~~G~ 295 (506)
T 3f8t_A 286 D-RG-WALRAGA 295 (506)
T ss_dssp S-SS-EEEEECH
T ss_pred C-CC-cccCCCe
Confidence 7 88 9999995
No 2
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=1.3e-16 Score=131.55 Aligned_cols=90 Identities=40% Similarity=0.623 Sum_probs=83.3
Q ss_pred CCchhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEEEeecccCCCCceEEEEe
Q psy9645 8 QRRTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGASAVGLTAYVGK 85 (98)
Q Consensus 8 ~~~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~~ss~~GLTasv~r 85 (98)
|-.+|++++|++ ++|+||..+...+ .+.|+++|+||+|+||||||+|++++++.+||.+|+++.+++.++|++++.+
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCCCcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 456789999999 9999999888877 8999999999999999999999999999999999999998999999999999
Q ss_pred cCCCCceEEecCC
Q psy9645 86 HPTTKEWTVEADI 98 (98)
Q Consensus 86 ~~~~~ew~leaGA 98 (98)
+..+++|.+++|+
T Consensus 374 ~~~~g~~~~~~G~ 386 (595)
T 3f9v_A 374 EKGTGEYYLEAGA 386 (595)
T ss_dssp GGGTSSCSEEECH
T ss_pred ccccccccccCCe
Confidence 8888999998874
No 3
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.08 E-value=4.7e-06 Score=62.07 Aligned_cols=76 Identities=14% Similarity=0.047 Sum_probs=49.6
Q ss_pred CCchhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEE-Eeec-ccCCCCceEEE
Q psy9645 8 QRRTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIF-TTGQ-GASAVGLTAYV 83 (98)
Q Consensus 8 ~~~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~-~sG~-~ss~~GLTasv 83 (98)
+..+|++.++.+ +.+..+ -|+||.|+||||||+|++.+++.++..++ +... ..+...++...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------------~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~ 92 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------------GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTM 92 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------------CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEE
T ss_pred cceeCcHHHHHHHHHHHHcC--------------CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCce
Confidence 346788888877 444332 28999999999999999999988776544 3322 22223355554
Q ss_pred EecCCCCceEEecC
Q psy9645 84 GKHPTTKEWTVEAD 97 (98)
Q Consensus 84 ~r~~~~~ew~leaG 97 (98)
..+...++|.++.|
T Consensus 93 ~~~~~~~~~~~~~g 106 (331)
T 2r44_A 93 IYNQHKGNFEVKKG 106 (331)
T ss_dssp EEETTTTEEEEEEC
T ss_pred eecCCCCceEeccC
Confidence 44445667766654
No 4
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.71 E-value=2.5e-05 Score=57.70 Aligned_cols=50 Identities=24% Similarity=0.199 Sum_probs=37.3
Q ss_pred chhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 10 RTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 10 ~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
.+|++.+|.+ +.++... .-|+||.|+||||||+|++++++.+++..+..+
T Consensus 26 i~G~~~~~~~l~~~~~~~~------------~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~ 77 (350)
T 1g8p_A 26 IVGQEDMKLALLLTAVDPG------------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEG 77 (350)
T ss_dssp SCSCHHHHHHHHHHHHCGG------------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETT
T ss_pred ccChHHHHHHHHHHhhCCC------------CceEEEECCCCccHHHHHHHHHHhCcccccccc
Confidence 5678888888 3333321 126999999999999999999999887555443
No 5
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.45 E-value=0.00012 Score=52.49 Aligned_cols=62 Identities=19% Similarity=0.154 Sum_probs=37.1
Q ss_pred CchhHHHHHHH-hhh---cCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCC-ceEEEeec
Q psy9645 9 RRTWMDDIKEW-TNI---PGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGP-RAIFTTGQ 72 (98)
Q Consensus 9 ~~~g~~~iK~a-L~L---~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~p-rsv~~sG~ 72 (98)
-.+|++.+|.. ..+ +-....... ...+-.-++||+|+||||||+|++.+++... .-+++++.
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~ 79 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQK--LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGS 79 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSC
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHHHH--cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHH
Confidence 35678888888 222 111111100 1122234799999999999999999987765 34555543
No 6
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.44 E-value=6.8e-05 Score=50.18 Aligned_cols=27 Identities=37% Similarity=0.682 Sum_probs=24.1
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+.+|||.|+||||||.+.+++.+.+++
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 358999999999999999999988754
No 7
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.43 E-value=0.00012 Score=51.87 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=36.7
Q ss_pred CchhHHHHHHH-hhhcCCcccC-CCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCc-eEEEee
Q psy9645 9 RRTWMDDIKEW-TNIPGNQQAG-ASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPR-AIFTTG 71 (98)
Q Consensus 9 ~~~g~~~iK~a-L~L~GG~~~~-~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr-sv~~sG 71 (98)
-.+|++.+|+. ..++-..... .-.....+..-++||.|+||||||++++.+++.... -++++.
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~ 72 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAG 72 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEET
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEech
Confidence 35788999888 2222111110 000011233457999999999999999988765443 344444
No 8
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.42 E-value=6.6e-05 Score=61.09 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=35.0
Q ss_pred CCchhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 8 QRRTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 8 ~~~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+-.+|+++++.. +.+.++ -|+||.|+||||||+|++++++.+++
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------------~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------------ESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------------CEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hhhHHHHHHHHHHHHHHhcC--------------CeeEeecCchHHHHHHHHHHHHHHhh
Confidence 346788888877 555443 29999999999999999999998765
No 9
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.40 E-value=8.1e-05 Score=53.80 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=38.3
Q ss_pred CchhHHHHHHH-h-hhcCCccc-CCCCCc-cccCceEEEeeCCCChhhHHHHHHHHHhCCc-eEEEeec
Q psy9645 9 RRTWMDDIKEW-T-NIPGNQQA-GASEKH-RVRGDINVLLCGDPGTAKSQFLKYMEKIGPR-AIFTTGQ 72 (98)
Q Consensus 9 ~~~g~~~iK~a-L-~L~GG~~~-~~~~g~-~~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr-sv~~sG~ 72 (98)
..+|++.+|++ . .+.....+ ...++. ..+...++||.|+||||||++++.+++.... .++++..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~ 84 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcch
Confidence 46888888888 2 22221110 000000 0122358999999999999999998876654 4445543
No 10
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.35 E-value=0.00017 Score=49.44 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=27.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~sG~~ 73 (98)
-+.|+|.+|+|||||++.++.+.| .++..+..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~-~~~~~~~~ 40 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA-EIKISISH 40 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS-SEEECCCE
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC-CeEEecee
Confidence 478999999999999999999987 56666643
No 11
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.34 E-value=0.00017 Score=47.95 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=23.7
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..+..++|+++|++++|||+|++....-
T Consensus 3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 3 EKKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999999887654
No 12
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.31 E-value=0.00011 Score=52.58 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=25.0
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc-eEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR-AIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr-sv~~sG 71 (98)
.++|+|+||+|||+|++.++..... .+++++
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~ 82 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASG 82 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeeH
Confidence 3999999999999999999987654 344444
No 13
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.27 E-value=0.0002 Score=52.20 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=35.0
Q ss_pred chhHHHHHHH-hhhcCCcccC--CCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceE
Q psy9645 10 RTWMDDIKEW-TNIPGNQQAG--ASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAI 67 (98)
Q Consensus 10 ~~g~~~iK~a-L~L~GG~~~~--~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv 67 (98)
.+|++.+|+. ..++-..... .-.+. ....-++||.|+||||||+|++.+++.....+
T Consensus 23 i~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 23 IAGQDVAKQALQEMVILPSVRPELFTGL-RAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp SCCCHHHHHHHHHHTHHHHHCGGGSCGG-GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred hCChHHHHHHHHHHHHhhhhCHHHHhcC-CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 5678888888 2222111000 00011 11234899999999999999999988765533
No 14
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.26 E-value=0.00017 Score=54.07 Aligned_cols=57 Identities=21% Similarity=0.158 Sum_probs=35.6
Q ss_pred chhHHHHHHH-hhhcCC---cccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 10 RTWMDDIKEW-TNIPGN---QQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 10 ~~g~~~iK~a-L~L~GG---~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.+|++.+|+. ..++-- .+..... ..+...++||.|+||||||.|++.+++.....++
T Consensus 20 i~G~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 80 (322)
T 3eie_A 20 VAGLEGAKEALKEAVILPVKFPHLFKG--NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFF 80 (322)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCGGGCCT--TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEE
T ss_pred hcChHHHHHHHHHHHHHHHhCHHHHhc--CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEE
Confidence 5678888888 222110 0000011 1233458999999999999999999877655433
No 15
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.26 E-value=0.0002 Score=47.79 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=25.1
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
...++|+++|+|++|||+|++++....+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 45689999999999999999999877654
No 16
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.25 E-value=0.00022 Score=46.65 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=22.9
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
..+..++|+++|++|+|||+|++....
T Consensus 3 ~~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 3 HMTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 345668999999999999999988754
No 17
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.22 E-value=0.00016 Score=52.78 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=25.0
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc-eEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR-AIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr-sv~~sG 71 (98)
.++|+|+||+|||+|++.++...+. .+++++
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~ 106 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASG 106 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEecH
Confidence 3999999999999999999987654 344444
No 18
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.22 E-value=0.00029 Score=48.23 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=27.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~sG~ 72 (98)
.+.|+|.||+||||+++.++......+++++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d 35 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGD 35 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSEEEEEHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCeEEEccc
Confidence 47899999999999999998865556888875
No 19
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.21 E-value=0.00021 Score=47.08 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-+++|.|+||+|||+|++.+++..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999887653
No 20
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.19 E-value=0.00031 Score=48.61 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=27.6
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc----------eEEEeecc
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR----------AIFTTGQG 73 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr----------sv~~sG~~ 73 (98)
.+|+ -+.|+|+||+|||+|++.++.+... .+|..+..
T Consensus 23 ~~G~-~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 23 ETQA-ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp ESSE-EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCc-EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 3454 6889999999999999999874322 66666653
No 21
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.16 E-value=0.00039 Score=52.64 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=26.0
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
...++||.|+||||||.+.+.+++.+...++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~ 80 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFT 80 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 3458999999999999999999988765444
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.15 E-value=0.00037 Score=50.33 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=24.7
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.-++||.|+||||||+|++.+++.....++
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 347999999999999999999877655433
No 23
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.12 E-value=0.00028 Score=49.45 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=22.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
++.|+|+||+|||+||+.++.+.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998865
No 24
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.10 E-value=0.00028 Score=46.72 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-++||.|+||+|||+|++.+++.+
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999998887654
No 25
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.06 E-value=0.00033 Score=47.64 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
-+++|+|+||+|||+|++.++....
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999887653
No 26
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.05 E-value=0.00052 Score=45.93 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=24.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
.|.|+|.||+|||++++.++..... .++.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~-~~id~ 35 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNM-EFYDS 35 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTC-EEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-CEEec
Confidence 6899999999999999999987654 44443
No 27
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.04 E-value=0.00049 Score=51.05 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=26.0
Q ss_pred EEeeCCCChhhHHHHHHHHHhCC-ceEEEeec
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIGP-RAIFTTGQ 72 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~p-rsv~~sG~ 72 (98)
++|+|+||||||+|++.++.... ..++++|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~ 78 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 78 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEETT
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcH
Confidence 99999999999999999988764 45666664
No 28
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.03 E-value=0.00041 Score=45.40 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=20.7
Q ss_pred CceEEEeeCCCChhhHHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
+.++|+++|+|++|||+|++....
T Consensus 1 ~~~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 1 GVFKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999987753
No 29
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.02 E-value=0.00045 Score=44.59 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.2
Q ss_pred ceEEEeeCCCChhhHHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.++|+++|+||+|||+|++....
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 47999999999999999887664
No 30
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.00 E-value=0.00049 Score=54.65 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=32.2
Q ss_pred CCchhHHHHHHH-hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 8 QRRTWMDDIKEW-TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 8 ~~~~g~~~iK~a-L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.|.||.+..... +..+.. +..-|+||+|+||||||.+++.+++..
T Consensus 180 d~iiGr~~~i~~l~~~l~r-----------~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSR-----------RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHC-----------SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhc-----------cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 478886665555 444322 122389999999999999999888764
No 31
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.00 E-value=0.00038 Score=50.08 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.++||.|+||||||.+++++++.+++
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 48999999999999999999998764
No 32
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.98 E-value=0.00049 Score=44.92 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=21.5
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
-.++|+++|++|+|||+|++....-
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3589999999999999999877643
No 33
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.96 E-value=0.00054 Score=55.92 Aligned_cols=43 Identities=30% Similarity=0.331 Sum_probs=33.0
Q ss_pred chhHHHHHHH--hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCce
Q psy9645 10 RTWMDDIKEW--TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRA 66 (98)
Q Consensus 10 ~~g~~~iK~a--L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prs 66 (98)
.+|++.++.. +.+..| -+++|+|+||||||+|++.++.+.++.
T Consensus 43 i~G~~~~l~~l~~~i~~g--------------~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQK--------------RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CCSCHHHHHHHHHHHHTT--------------CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred EECchhhHhhccccccCC--------------CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 3666666666 443322 299999999999999999999998753
No 34
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.96 E-value=0.00052 Score=44.65 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.7
Q ss_pred ceEEEeeCCCChhhHHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.++|+++|++|+|||+|++....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 47999999999999999988765
No 35
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.95 E-value=0.00054 Score=44.46 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.6
Q ss_pred ceEEEeeCCCChhhHHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.++|+++|++|+|||+|++....
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999998765
No 36
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.95 E-value=0.00056 Score=44.54 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.2
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|+++|++|+|||+|++....-
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 489999999999999999887654
No 37
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.95 E-value=0.00048 Score=52.01 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=26.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCce-EEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRA-IFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prs-v~~sG~ 72 (98)
-|++|+|+||+|||+|++.++...... .+++|.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~ 85 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGP 85 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEech
Confidence 389999999999999999999876433 344553
No 38
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.95 E-value=0.00059 Score=44.91 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=21.3
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.+..++|+++|++|+|||+|++....
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHh
Confidence 35568999999999999999987654
No 39
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.95 E-value=0.00058 Score=44.36 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.2
Q ss_pred CceEEEeeCCCChhhHHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
-.++|+++|++|+|||+|++....
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 357999999999999999998765
No 40
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.94 E-value=0.00056 Score=44.38 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.8
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|+++|++|+|||+|++....-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999877643
No 41
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.93 E-value=0.00048 Score=47.16 Aligned_cols=32 Identities=9% Similarity=-0.009 Sum_probs=22.6
Q ss_pred CCCccccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 31 SEKHRVRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 31 ~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..+...+..++|+++|++|+|||+|++....-
T Consensus 16 ~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 16 FQGMPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 34556677899999999999999999987754
No 42
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.93 E-value=0.00062 Score=46.34 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=26.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC----ceEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP----RAIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p----rsv~~sG~~ 73 (98)
.++|+|+||+|||+|++.++...+ +.+|+++..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 789999999999999999987652 256666653
No 43
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.92 E-value=0.00089 Score=51.30 Aligned_cols=59 Identities=19% Similarity=0.093 Sum_probs=35.7
Q ss_pred chhHHHHHHH-hhhcCCcccCCCCCcc-ccCceEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 10 RTWMDDIKEW-TNIPGNQQAGASEKHR-VRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 10 ~~g~~~iK~a-L~L~GG~~~~~~~g~~-~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.+|++.+|.. ..++--.......... .+..-++||.|+||||||.|++.+++.....++
T Consensus 117 iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 117 IAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred hCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 5788888887 2222110000000001 122359999999999999999999887665443
No 44
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.92 E-value=0.00058 Score=45.28 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.8
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...++|+++|++|+|||+|++....
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 3458999999999999999988775
No 45
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.92 E-value=0.0011 Score=53.88 Aligned_cols=61 Identities=21% Similarity=0.228 Sum_probs=38.1
Q ss_pred chhHHHHHHH----hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCc-eEEEeec
Q psy9645 10 RTWMDDIKEW----TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPR-AIFTTGQ 72 (98)
Q Consensus 10 ~~g~~~iK~a----L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr-sv~~sG~ 72 (98)
.+|.+.+|.. ...+........-+.+. .-.+||+|+||||||+|++.++..+.. .+++++.
T Consensus 33 v~G~~~~k~~l~~lv~~l~~~~~~~~lg~~i--p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~ 98 (499)
T 2dhr_A 33 VAGAEEAKEELKEIVEFLKNPSRFHEMGARI--PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 98 (499)
T ss_dssp SCSCHHHHHHHHHHHHHHHCGGGTTTTSCCC--CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCcHHHHHHHHHHHHHhhchhhhhhccCCC--CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 5677888777 22233222211112222 224999999999999999999987754 4556654
No 46
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.92 E-value=0.0006 Score=44.24 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.1
Q ss_pred CceEEEeeCCCChhhHHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
-.++|+++|++++|||+|++....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 358999999999999999987764
No 47
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.92 E-value=0.00061 Score=44.00 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.9
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|+++|++|+|||+|++....-
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 479999999999999999887643
No 48
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.92 E-value=0.00058 Score=47.83 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=26.0
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCceEEEe
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTT 70 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~s 70 (98)
.+|+ -+.|+|++|+|||+|++.+..+.| .++..
T Consensus 18 ~~Ge-i~~l~GpnGsGKSTLl~~l~gl~~-~i~~~ 50 (207)
T 1znw_A 18 AVGR-VVVLSGPSAVGKSTVVRCLRERIP-NLHFS 50 (207)
T ss_dssp -CCC-EEEEECSTTSSHHHHHHHHHHHST-TCEEC
T ss_pred CCCC-EEEEECCCCCCHHHHHHHHHhhCC-ceEEc
Confidence 3444 578999999999999999999987 35544
No 49
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.91 E-value=0.00051 Score=46.65 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=25.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC-ceEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP-RAIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p-rsv~~sG~ 72 (98)
.+.|+|.||+|||||++.++.... ..+++.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d 43 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 43 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSSCEEEECTT
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCeEEEccc
Confidence 689999999999999999988732 24566654
No 50
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.91 E-value=0.00076 Score=51.16 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=25.9
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
...++||.|+||||||++++.+++.+...++
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4568999999999999999999988765433
No 51
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.90 E-value=0.00072 Score=46.32 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.3
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.++++++|++|+|||+|++......
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4789999999999999999988764
No 52
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.90 E-value=0.00056 Score=47.12 Aligned_cols=33 Identities=9% Similarity=0.170 Sum_probs=25.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC----ceEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP----RAIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p----rsv~~sG~ 72 (98)
-+++|.|+||+|||+|++.+++... +.+|++..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 3899999999999999998876543 34555543
No 53
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.89 E-value=0.00049 Score=50.11 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=22.8
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
+...|+||.|+||||||++++.+++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 445699999999999999998777654
No 54
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.89 E-value=0.00064 Score=44.58 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.8
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|+++|+||+|||+|++....-
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 478999999999999999877643
No 55
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.89 E-value=0.00067 Score=44.49 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.3
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
...++|+++|++++|||+|++....-
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34689999999999999999987654
No 56
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.88 E-value=0.00066 Score=44.76 Aligned_cols=23 Identities=13% Similarity=0.439 Sum_probs=20.5
Q ss_pred ceEEEeeCCCChhhHHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.++|+++|+|++|||+|++....
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 58999999999999999987764
No 57
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.87 E-value=0.00095 Score=49.57 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCce
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRA 66 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prs 66 (98)
-++||.|+||||||+|++.+++.....
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~~~ 76 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQAN 76 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCE
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 489999999999999999999876553
No 58
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.87 E-value=0.00073 Score=44.50 Aligned_cols=26 Identities=27% Similarity=0.361 Sum_probs=22.0
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
...++|+++|+||+|||+|++....-
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcC
Confidence 34579999999999999999987643
No 59
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.86 E-value=0.0018 Score=45.31 Aligned_cols=37 Identities=32% Similarity=0.459 Sum_probs=27.0
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHH--Hh---CCceEEEeec
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYME--KI---GPRAIFTTGQ 72 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~--~l---~prsv~~sG~ 72 (98)
-.+|+ -++|+|+||+|||+|++.++ .+ ....+|+++.
T Consensus 27 i~~G~-~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 27 FPEGT-TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTC-EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCc-EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 34555 67889999999999999877 33 2346676664
No 60
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.86 E-value=0.00061 Score=43.78 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.7
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|+++|++|+|||+|++....-
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999887643
No 61
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.85 E-value=0.00051 Score=49.95 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=23.9
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-..++||+|+||||||++++.+++..++
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 3458999999999999999999887644
No 62
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.84 E-value=0.00067 Score=44.99 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.5
Q ss_pred ceEEEeeCCCChhhHHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.++|+++|+|++|||+|++....
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999887664
No 63
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.84 E-value=0.00065 Score=45.75 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=21.1
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.-.++|+++|+||+|||+|++....
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhc
Confidence 3458999999999999999987764
No 64
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.83 E-value=0.00068 Score=44.11 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.8
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|+++|++|+|||+|++....-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 478999999999999999887643
No 65
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.83 E-value=0.00062 Score=51.12 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=24.5
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+.+|||.|+||||||.+++++.+.+++
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcc
Confidence 458999999999999999999998765
No 66
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.82 E-value=0.00042 Score=55.92 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=37.3
Q ss_pred chhHHHHHHH--hhhcCCccc-CCCCCccc-cCceEEEeeCCCChhhHHHHHHHHHhCCceEEE
Q psy9645 10 RTWMDDIKEW--TNIPGNQQA-GASEKHRV-RGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFT 69 (98)
Q Consensus 10 ~~g~~~iK~a--L~L~GG~~~-~~~~g~~~-Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~ 69 (98)
.+|++.+|++ ..+.....+ ...++... ...-|+||+|+||||||++.+.+++..+...+.
T Consensus 17 IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~ 80 (444)
T 1g41_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (444)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCcee
Confidence 5789999998 222111000 00111110 112489999999999999999999887665443
No 67
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.82 E-value=0.00089 Score=46.53 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=26.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~ 72 (98)
-.+.|+|.||+|||++++.++... ..+++.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~-g~~~i~~d 61 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET-GLEFAEAD 61 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-CCEEEEGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-CCeEEccc
Confidence 368899999999999999998765 44666665
No 68
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.81 E-value=0.0022 Score=45.42 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=23.1
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
...++|+|+|++|+|||+|++.+.....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 3568999999999999999998876533
No 69
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.81 E-value=0.00074 Score=43.93 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
++|+++|++++|||+|++....
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999987754
No 70
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.81 E-value=0.00064 Score=46.01 Aligned_cols=24 Identities=21% Similarity=0.581 Sum_probs=20.6
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+.|+++|+||+|||+|++.....
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999987753
No 71
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.80 E-value=0.00083 Score=44.70 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.6
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.-.++|+++|++|+|||+|++....
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3468999999999999999987764
No 72
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.80 E-value=0.00083 Score=45.31 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=22.5
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
....++|+++|++++|||+|++....-
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 344589999999999999999877653
No 73
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.80 E-value=0.00051 Score=49.66 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=28.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
.+.|+|++|+|||||||.++.+.++ .|++.|...
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 6789999999999999999998865 566666543
No 74
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.79 E-value=0.00095 Score=49.38 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=35.9
Q ss_pred chhHHHHHHH-hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCce-EEEee
Q psy9645 10 RTWMDDIKEW-TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRA-IFTTG 71 (98)
Q Consensus 10 ~~g~~~iK~a-L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prs-v~~sG 71 (98)
.+|++.++.. ...+-..... .+...++||.|+||||||+|++.+++..... +++++
T Consensus 31 iiG~~~~~~~l~~~l~~~~~~------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 31 YIGQESIKKNLNVFIAAAKKR------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp CCSCHHHHHHHHHHHHHHHHT------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred hCChHHHHHHHHHHHHHHHhc------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecc
Confidence 5778887777 2222211110 1123479999999999999999998776553 44444
No 75
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.79 E-value=0.00087 Score=44.29 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=21.9
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.-.++|+++|++++|||+|++....-
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 34589999999999999999877643
No 76
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.79 E-value=0.00059 Score=44.51 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.6
Q ss_pred ceEEEeeCCCChhhHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~ 60 (98)
.++|+++|+||+|||+|++...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999998764
No 77
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.79 E-value=0.00089 Score=44.75 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
...++|+++|++++|||+|++....-
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 44589999999999999999887653
No 78
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.79 E-value=0.00086 Score=44.26 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
...++|+++|++++|||+|++....-
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 45689999999999999999877643
No 79
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.00065 Score=45.64 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
+++|.|+||+|||++++.+++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999888764
No 80
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.78 E-value=0.0009 Score=45.58 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=21.0
Q ss_pred ccccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 34 HRVRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 34 ~~~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...+..++|+++|+|++|||+|++....
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHh
Confidence 3456678999999999999999987764
No 81
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.77 E-value=0.0009 Score=46.77 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=20.8
Q ss_pred ccccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 34 HRVRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 34 ~~~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
......++|+++|++++|||+|++....
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhc
Confidence 3455678999999999999999987654
No 82
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.77 E-value=0.0007 Score=49.35 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=28.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
.+.|+|++|+||||||+.++.+.+. .|++.|...
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 69 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT 69 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEc
Confidence 7899999999999999999998876 577777543
No 83
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.77 E-value=0.00093 Score=44.30 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.1
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|+++|++|+|||+|++....-
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 479999999999999999987653
No 84
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.76 E-value=0.00086 Score=46.45 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=22.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-+.|+|++|+|||+|+|.++.+.|-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l~~ 59 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 6889999999999999999998753
No 85
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.76 E-value=0.00081 Score=44.19 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.6
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..++|+++|++|+|||+|++....-
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3579999999999999999877654
No 86
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.76 E-value=0.0018 Score=51.02 Aligned_cols=54 Identities=20% Similarity=0.055 Sum_probs=33.3
Q ss_pred chhHHHHHHH-hhhcCCcccCCCCC-ccccCceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 10 RTWMDDIKEW-TNIPGNQQAGASEK-HRVRGDINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 10 ~~g~~~iK~a-L~L~GG~~~~~~~g-~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.+|++.+|.. ...+-.-.+...-. ...+..-++||.|+||||||.|++.+++.+
T Consensus 136 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 136 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4578888888 22221100100000 012223489999999999999999999877
No 87
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.76 E-value=0.00083 Score=49.35 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=28.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||||||.++.+.+. .|++.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 61 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGAD 61 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 47889999999999999999999865 56776653
No 88
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.76 E-value=0.00017 Score=48.12 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=24.9
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCceEEE
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPRAIFT 69 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~prsv~~ 69 (98)
..+|||.|+||||||.+.+++.+.+++-+++
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~ 57 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGTPWVSP 57 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTSCEECC
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCCCeEEe
Confidence 3589999999999999999998776633333
No 89
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.75 E-value=0.00092 Score=44.94 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.0
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...++|+++|++++|||+|++....
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 4568999999999999999998765
No 90
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.75 E-value=0.0012 Score=50.88 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=29.7
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhC--C--------ceEEEeeccc
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIG--P--------RAIFTTGQGA 74 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~--p--------rsv~~sG~~s 74 (98)
.+|. -++|+|+||+|||||++.++... | +++|+++..+
T Consensus 129 ~~G~-i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 129 ETQA-ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp ESSE-EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCCe-EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 3443 78899999999999999888776 3 3488888754
No 91
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.75 E-value=0.00089 Score=45.33 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=22.8
Q ss_pred ccccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 34 HRVRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 34 ~~~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...+..++|+++|++++|||+|++....
T Consensus 17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 17 RGSKEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHHc
Confidence 3455678999999999999999988764
No 92
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.75 E-value=0.001 Score=45.29 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=21.3
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHH
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~ 60 (98)
.....++|+++|++|+|||+|++...
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHh
Confidence 34556899999999999999996443
No 93
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.74 E-value=0.00098 Score=44.08 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.3
Q ss_pred ceEEEeeCCCChhhHHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.++|+++|++|+|||+|++....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 47999999999999999987764
No 94
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.73 E-value=0.00085 Score=44.00 Aligned_cols=23 Identities=9% Similarity=0.319 Sum_probs=20.5
Q ss_pred ceEEEeeCCCChhhHHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.++|+++|++|+|||+|++....
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 38999999999999999987764
No 95
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.73 E-value=0.00079 Score=45.42 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.3
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..+|.++|+||+|||+|++.....
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999988764
No 96
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.73 E-value=0.00097 Score=45.82 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=22.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-+.|+|++|+|||+|++.+....|.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCc
Confidence 6889999999999999999988763
No 97
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.73 E-value=0.00097 Score=45.70 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.7
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
.+.+.|+|++|+|||+|++.......
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 47999999999999999998887643
No 98
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.73 E-value=0.0023 Score=44.64 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=28.2
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHH--hCC--------ceEEEeecc
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEK--IGP--------RAIFTTGQG 73 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~--l~p--------rsv~~sG~~ 73 (98)
.+|+ -++|+|+||+|||+|++.++. +.+ +.+|+++..
T Consensus 22 ~~G~-~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 22 ETGS-ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp ETTS-EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCe-EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3444 689999999999999988776 332 478888765
No 99
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.73 E-value=0.001 Score=43.79 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.6
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
....+|+++|++|+|||+|++....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3457999999999999999988764
No 100
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.72 E-value=0.0011 Score=44.81 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.2
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
....++|+++|++|+|||+|++....
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHh
Confidence 34568999999999999999987764
No 101
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.72 E-value=0.0012 Score=46.97 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=24.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFT 69 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~ 69 (98)
-+.|+|++|+|||+|++.+..+.|-.++.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~pG~i~~ 53 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEFPNYFYF 53 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCcEEE
Confidence 58899999999999999999988634555
No 102
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.72 E-value=0.00092 Score=45.98 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-+++|.|+||+|||+|++.+++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999887654
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.72 E-value=0.00097 Score=44.36 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..|.++|+||+|||+|++.....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999988754
No 104
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.72 E-value=0.00072 Score=49.79 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=29.8
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
+|+ .+.|+|++|+|||||||.++.+.++ .|++.|...
T Consensus 32 ~Ge-~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 32 KGD-VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71 (257)
T ss_dssp TTC-EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 444 6889999999999999999998865 567766543
No 105
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.0011 Score=45.02 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=21.8
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
...++|+++|++++|||+|++....-
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44689999999999999999877653
No 106
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.72 E-value=0.00096 Score=43.82 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.9
Q ss_pred cCceEEEeeCCCChhhHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~ 60 (98)
...++|+++|+|++|||+|++...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 456899999999999999998764
No 107
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.71 E-value=0.0011 Score=43.75 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=21.6
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..++|+++|++|+|||+|++....-
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3589999999999999999887643
No 108
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.70 E-value=0.0011 Score=44.58 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=21.2
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
....++|+++|++++|||+|++....
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHc
Confidence 34568999999999999999987764
No 109
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.70 E-value=0.00077 Score=49.95 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=27.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
.+.|+|++|+|||||||.++.+.+. .|++.|..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~ 69 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQN 69 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 6889999999999999999999865 56666654
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.69 E-value=0.0012 Score=44.01 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.3
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..+|+++|++|+|||+|++.....
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 479999999999999999988753
No 111
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.69 E-value=0.0011 Score=43.89 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=21.3
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
-.++|+++|++++|||+|++....-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3579999999999999999877643
No 112
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.68 E-value=0.0012 Score=54.94 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=33.0
Q ss_pred CCchhHHHHHHH-hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 8 QRRTWMDDIKEW-TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 8 ~~~~g~~~iK~a-L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.|.||.+..... +..+.. +..-|+||+|+||||||.+.+.+++..
T Consensus 180 d~iiG~~~~i~~l~~~l~~-----------~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSR-----------RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHC-----------SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhC-----------CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 578887766666 444322 222389999999999999999888764
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.68 E-value=0.0013 Score=42.57 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+|+++|++|+|||+|++....-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999887654
No 114
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.68 E-value=0.0012 Score=44.71 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=21.8
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+..++|+++|++|+|||+|++....-
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcC
Confidence 345689999999999999999877653
No 115
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.67 E-value=0.0033 Score=45.53 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.3
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
...++|+|+|+||+|||+|++.+..-
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999988754
No 116
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.67 E-value=0.0012 Score=44.78 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=20.8
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
..-.++|+++|++++|||+|++....
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHh
Confidence 34568999999999999999976654
No 117
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.66 E-value=0.0015 Score=43.78 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=23.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.|+|+|.||+|||++.+..++..+...+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~ 32 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWL 32 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 5899999999999999999887765433
No 118
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.66 E-value=0.0012 Score=44.19 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
...++|+++|++++|||+|++....-
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 45689999999999999999887653
No 119
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.66 E-value=0.00085 Score=49.32 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=28.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
.+.|+|++|+||||||+.++.+.++ .|++.|...
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~ 73 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 73 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence 6889999999999999999999865 677776543
No 120
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.66 E-value=0.00086 Score=48.94 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=28.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
.+.|+|++|+|||||||.++.+.++ .|++.|...
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 6889999999999999999998765 677777543
No 121
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.66 E-value=0.0014 Score=44.07 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=25.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~ 72 (98)
-.++|+|.||+|||++++.++... ..+++++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~-g~~~i~~d 40 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL-HAAFLDGD 40 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH-TCEEEEGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh-CcEEEeCc
Confidence 368999999999999999988764 34566654
No 122
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.65 E-value=0.0018 Score=48.87 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=22.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-++||.|+||||||.|++.+++-+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 489999999999999999998776
No 123
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.65 E-value=0.0012 Score=44.24 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.6
Q ss_pred ceEEEeeCCCChhhHHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.++|+++|++|+|||+|++....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECcCCCCHHHHHHHHHc
Confidence 47999999999999999988764
No 124
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.65 E-value=0.0012 Score=44.63 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=22.4
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+..++|+++|++++|||+|++....-
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 345689999999999999999877653
No 125
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.65 E-value=0.0012 Score=44.14 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.5
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
+..++|+++|+|++|||+|++....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 5568999999999999999987764
No 126
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.65 E-value=0.00085 Score=49.93 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=26.4
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc-eEEEe
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR-AIFTT 70 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr-sv~~s 70 (98)
.+....+||.|+||||||.|.+.+++-+.. -++++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 344568999999999999999988866544 34444
No 127
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.64 E-value=0.0012 Score=53.55 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=33.8
Q ss_pred chhHHHHHHHh-h--hcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCCce
Q psy9645 10 RTWMDDIKEWT-N--IPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPRA 66 (98)
Q Consensus 10 ~~g~~~iK~aL-~--L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~prs 66 (98)
.+|.+++|+.+ . .+-.... ..++. ++||+|+||||||+|++.++...++.
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~------~~~g~-~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTK------SLKGP-ILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSS------SCCSC-EEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred hccHHHHHHHHHHHHHHHHhcc------cCCCC-EEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 46778888771 1 1111111 12343 89999999999999999999887553
No 128
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.64 E-value=0.00088 Score=50.36 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=28.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
-+.|+|++|+|||||||.++.+.+. .|++.|...
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i 72 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI 72 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence 6889999999999999999998865 577777543
No 129
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.64 E-value=0.00091 Score=48.50 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=27.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
.+.|+|++|+||||||+.++.+.+. .|++.|..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 72 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVP 72 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE
Confidence 5788999999999999999998865 56666643
No 130
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.64 E-value=0.0011 Score=47.95 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=22.8
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
..++||.|+||||||.|++.+++....
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~ 90 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNF 90 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 358999999999999999988876443
No 131
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.64 E-value=0.0011 Score=48.00 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=26.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG 71 (98)
.+.|+|++|+||||||+.++.+.++ .|++.|
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 69 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC
Confidence 6889999999999999999998765 455554
No 132
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.64 E-value=0.0015 Score=45.61 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=27.2
Q ss_pred ccCceEEEeeCCCChhhHHH-HHHHHHhC---CceEEEeecc
Q psy9645 36 VRGDINVLLCGDPGTAKSQF-LKYMEKIG---PRAIFTTGQG 73 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSql-L~~~~~l~---prsv~~sG~~ 73 (98)
.+|+ -++++|+||+|||+| ++.+..++ -+.+|++...
T Consensus 21 ~~G~-~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 21 PERN-VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp ETTC-EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCc-EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 4554 688999999999999 55655554 3578887764
No 133
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.63 E-value=0.0011 Score=45.04 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=22.1
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.-.++|+++|++++|||+|++....-
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 34589999999999999999887654
No 134
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.63 E-value=0.0011 Score=44.03 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.3
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...++|+++|++|+|||+|++....
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc
Confidence 3458999999999999999987764
No 135
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.63 E-value=0.0011 Score=44.54 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=21.7
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
+..++|+++|++++|||+|++....
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4468999999999999999988774
No 136
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.62 E-value=0.00085 Score=48.96 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=25.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG 71 (98)
.+.|+|++|+||||||+.++.+.++ .|++.|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 66 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG 66 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 7899999999999999999999765 444444
No 137
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.62 E-value=0.0014 Score=44.20 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.6
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
-.++|+++|++++|||+|++....-
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3579999999999999999887654
No 138
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.61 E-value=0.00078 Score=44.84 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=20.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
++|+++|++|+|||+|++....-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 58999999999999999877643
No 139
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.61 E-value=0.0014 Score=44.41 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=22.7
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..-.++|+++|++|+|||+|++....-
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 344689999999999999999887654
No 140
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.61 E-value=0.00095 Score=49.76 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=28.0
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
.+.|+|++|+||||||+.++.+.+. .|++.|..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 82 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP 82 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 6899999999999999999999865 56666653
No 141
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.60 E-value=0.0012 Score=43.82 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=20.9
Q ss_pred CceEEEeeCCCChhhHHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
..++|+++|++++|||+|++....
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 357999999999999999887763
No 142
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.60 E-value=0.0013 Score=48.69 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=24.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC----CceEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG----PRAIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~----prsv~~sG 71 (98)
+++|.|+||+|||+|++.+++.. .+.+|++.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 79999999999999999988754 34556654
No 143
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.60 E-value=0.0011 Score=48.39 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=28.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+||||||+.++.+.+. .|++.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 65 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 37899999999999999999998764 67777754
No 144
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.59 E-value=0.0012 Score=45.05 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=21.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.+.|+|.||+|||++++.++.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999999887
No 145
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.59 E-value=0.0014 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.2
Q ss_pred ceEEEeeCCCChhhHHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.+.|+++|+|++|||+|++....
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 47999999999999999887664
No 146
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.58 E-value=0.0013 Score=44.67 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=20.7
Q ss_pred ccccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 34 HRVRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 34 ~~~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
......++|+++|++|+|||+|++....
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHh
Confidence 3456678999999999999999987753
No 147
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.58 E-value=0.001 Score=49.61 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=28.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
.+.|+|++|+|||||||.++.+.++ .|++.|..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 87 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGIN 87 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 6789999999999999999999865 57777754
No 148
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.58 E-value=0.0013 Score=44.63 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.9
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|+++|++++|||+|++....-
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999999877643
No 149
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0015 Score=43.94 Aligned_cols=27 Identities=11% Similarity=0.282 Sum_probs=23.1
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
+..++|+++|++|+|||+|++....-.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999887653
No 150
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.58 E-value=0.0024 Score=43.16 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=22.9
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..-.++|+++|++++|||+|++....-
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcC
Confidence 455689999999999999999877654
No 151
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.57 E-value=0.001 Score=49.25 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=27.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
.+.|+|++|+|||||||.++.+.+. .|++.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~ 70 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGER 70 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 6889999999999999999999865 56666653
No 152
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.57 E-value=0.0011 Score=49.66 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=29.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
+|+ .+.|+|++|+|||||||.++.+.+. .|++.|..
T Consensus 46 ~Ge-~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 84 (279)
T 2ihy_A 46 KGD-KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKM 84 (279)
T ss_dssp TTC-EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBC
T ss_pred CCC-EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 443 6889999999999999999998865 56666653
No 153
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.57 E-value=0.0013 Score=45.30 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.9
Q ss_pred EEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+.|+|.+|+|||+|++.+..+.|.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCGG
T ss_pred EEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999998874
No 154
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.56 E-value=0.0022 Score=42.62 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=22.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEe
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTT 70 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~s 70 (98)
.|+|+|.||+|||++.+.+++......+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 589999999999999998887223334443
No 155
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.56 E-value=0.0012 Score=49.13 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=23.0
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+.++.|+|.+|+|||+|++.+..+.+.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 468999999999999999999977543
No 156
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.56 E-value=0.0016 Score=44.39 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=21.5
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+..++|+++|++++|||+|++....-
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 445689999999999999999887654
No 157
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.55 E-value=0.0015 Score=44.96 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=22.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
....+|+++|++|+|||+|++....-
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45679999999999999999877654
No 158
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.55 E-value=0.0015 Score=44.89 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.1
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
..-.++|+++|++++|||+|++....
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhc
Confidence 34458999999999999999987764
No 159
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.55 E-value=0.001 Score=49.50 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=29.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGAS 75 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss 75 (98)
.+.|+|++|+|||||||.++.+.+. .|+..|...+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 76 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLN 76 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETT
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECC
Confidence 6889999999999999999998865 5777776443
No 160
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.54 E-value=0.0015 Score=44.14 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.++|.|+||+|||+|++.+++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999887543
No 161
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.54 E-value=0.0011 Score=49.09 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=29.8
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
+|+ .+.|+|++|+|||||||.++.+.+. .|++.|...
T Consensus 40 ~Ge-i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 40 EGE-IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV 79 (256)
T ss_dssp TTC-EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred CCc-EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 444 6889999999999999999999765 577777543
No 162
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.54 E-value=0.0011 Score=45.36 Aligned_cols=28 Identities=21% Similarity=0.107 Sum_probs=22.1
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
....++|+++|++++|||+|++++..-.
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 4556899999999999999999877643
No 163
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.53 E-value=0.001 Score=44.10 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=20.5
Q ss_pred cCceEEEeeCCCChhhHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~ 60 (98)
+..++|+++|++|+|||+|++...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 346899999999999999987654
No 164
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.51 E-value=0.0015 Score=45.44 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=24.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
..|.|+|.||+||||+++.+++...-.+.-+|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g 37 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSG 37 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCc
Confidence 47999999999999999999876443333333
No 165
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.51 E-value=0.0011 Score=45.45 Aligned_cols=18 Identities=44% Similarity=0.621 Sum_probs=16.5
Q ss_pred EEEeeCCCChhhHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKY 58 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~ 58 (98)
-+.|+|.||+|||+|++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 678999999999999993
No 166
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.51 E-value=0.0015 Score=44.63 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.6
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..++|+++|++|+|||+|++....-
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4589999999999999999887653
No 167
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.51 E-value=0.0015 Score=44.81 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=20.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
+..++|+++|++|+|||+|++....-
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34579999999999999998876643
No 168
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.49 E-value=0.0018 Score=44.95 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-.|+|+|.||+|||++.+.+++....
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 38999999999999999988876544
No 169
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.49 E-value=0.00092 Score=44.47 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=11.6
Q ss_pred CceEEEeeCCCChhhHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~ 60 (98)
-.++|+++|++++|||+|++...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEEEEEECCCCC----------
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35899999999999999988665
No 170
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.48 E-value=0.0025 Score=48.53 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=24.0
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCce
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPRA 66 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~prs 66 (98)
.-++||.|+||||||.|++.+++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 4489999999999999999998876543
No 171
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.48 E-value=0.0015 Score=49.86 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=23.9
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCceE
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPRAI 67 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~prsv 67 (98)
.-++||.|+||||||.|++.+++.+...+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~ 112 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTF 112 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 34799999999999999998887665433
No 172
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.47 E-value=0.0006 Score=48.89 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=21.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
++||.|+||||||+|++.+++....
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC
Confidence 5999999999999999998875443
No 173
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.47 E-value=0.0013 Score=46.09 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
.+.|+|++|+|||+|++.+..+.|
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 688999999999999999988766
No 174
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.47 E-value=0.0012 Score=44.23 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=21.5
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.....++|+++|++++|||+|++....-
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3455689999999999999999887654
No 175
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.46 E-value=0.0013 Score=44.15 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
....+|+++|++|+|||+|++....-
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999999887643
No 176
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.44 E-value=0.0016 Score=45.56 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
..+.|+|.+|+|||||++.++.+.+
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999998875
No 177
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.0014 Score=48.96 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
|+||.|+||+|||++++.+++..
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999887653
No 178
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.43 E-value=0.002 Score=42.83 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=22.8
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.....+|+++|++|+|||+|++....-
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 345679999999999999999987654
No 179
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.43 E-value=0.003 Score=49.75 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=30.6
Q ss_pred cccCceEEEeeCCCChhhHHH-HHHHHHhC-----CceEEEeecccC
Q psy9645 35 RVRGDINVLLCGDPGTAKSQF-LKYMEKIG-----PRAIFTTGQGAS 75 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSql-L~~~~~l~-----prsv~~sG~~ss 75 (98)
-.|| + +++.|+||+|||+| |.++.+.. -+++|+++..+-
T Consensus 26 l~~G-i-teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 26 MQSG-L-LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp BCSE-E-EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred CcCC-e-EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 4577 5 89999999999999 66766653 358999987653
No 180
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.43 E-value=0.0017 Score=44.38 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=25.4
Q ss_pred hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHH
Q psy9645 20 TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 20 L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~ 60 (98)
..++.+.-+.. ..+..++|+++|+|++|||+|++...
T Consensus 14 ~~~~~~~~~~~----~~~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 14 LVPRGSLFSRI----FGKKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp ---CCCGGGGT----TTTSCEEEEEEESTTSSHHHHHHHHC
T ss_pred cchHHHHHHHh----ccCCccEEEEECCCCCCHHHHHHHHH
Confidence 45555554432 23456899999999999999998764
No 181
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.42 E-value=0.002 Score=45.95 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=21.1
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHH
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~ 60 (98)
.....+.|+|+|+|++|||+|++...
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHH
Confidence 34456899999999999999988765
No 182
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.42 E-value=0.0015 Score=48.62 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=32.4
Q ss_pred CchhHHHHHHHhh-hcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 9 RRTWMDDIKEWTN-IPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 9 ~~~g~~~iK~aL~-L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
..+|++.++.++. +.--... + ... .-++||.|+||+|||.|++.+++.+.
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~----~-~~~-~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIRE----G-KIA-GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHT----T-CCT-TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hccChHHHHHHHHHHHHHHHc----C-CCC-CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3478888887721 1111110 0 011 23899999999999999998887654
No 183
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.42 E-value=0.0018 Score=51.97 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=30.2
Q ss_pred ccccCceEEEeeCCCChhhHHHHHH--HHHhCC---ceEEEeecc
Q psy9645 34 HRVRGDINVLLCGDPGTAKSQFLKY--MEKIGP---RAIFTTGQG 73 (98)
Q Consensus 34 ~~~Rg~ihiLliGdpGtGKSqlL~~--~~~l~p---rsv~~sG~~ 73 (98)
.-.+|+ .++|+|+||+|||+|++. +..+.+ ..+|++|..
T Consensus 35 ~i~~Ge-~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 35 GLPIGR-STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp SEETTS-EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCe-EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 334565 688999999999999998 555544 589999875
No 184
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.41 E-value=0.0019 Score=43.95 Aligned_cols=25 Identities=16% Similarity=0.412 Sum_probs=21.1
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...++|+++|++++|||+|++....
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3457999999999999999987653
No 185
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.41 E-value=0.0018 Score=44.37 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.5
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..++|+++|++++|||+|++....-
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3579999999999999999877653
No 186
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.40 E-value=0.0015 Score=47.97 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
|+||.|+||+|||++++.+++..
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999887653
No 187
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.40 E-value=0.0018 Score=43.73 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.6
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..++|+++|+||+|||+|++....-
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4589999999999999999877644
No 188
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.39 E-value=0.0019 Score=50.26 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=28.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
.+.|+|++|+|||||||.++.+.+. .|++.|...
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i 64 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV 64 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence 6889999999999999999999865 567666543
No 189
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.39 E-value=0.0018 Score=44.57 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=20.6
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHH
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~ 60 (98)
....+.|+++|+||+|||+|++...
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHH
Confidence 3456899999999999999998764
No 190
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.38 E-value=0.0022 Score=42.33 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=20.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
.|+|+|.||+|||++.+.+++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999998876644
No 191
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.38 E-value=0.0016 Score=47.81 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=28.0
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh--CCc---eEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI--GPR---AIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l--~pr---sv~~sG~~ 73 (98)
+|+ .+.|+|++|+||||||+.++.+ .++ .|++.|..
T Consensus 28 ~Ge-~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~ 68 (250)
T 2d2e_A 28 KGE-VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGEN 68 (250)
T ss_dssp TTC-EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEE
Confidence 443 6889999999999999999997 322 56666654
No 192
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.38 E-value=0.0017 Score=44.29 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=20.1
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
+..++|+++|+||+|||+|++....
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3446999999999999999987765
No 193
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.38 E-value=0.0015 Score=48.31 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=30.9
Q ss_pred chhHHHHHHHh-hhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHH-hCC
Q psy9645 10 RTWMDDIKEWT-NIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEK-IGP 64 (98)
Q Consensus 10 ~~g~~~iK~aL-~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~-l~p 64 (98)
.+|++.++..| ..+- . ..+.. |++|.|+||+|||++++.+++ +.+
T Consensus 16 ~vg~~~~~~~l~~~~~---~------~~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 16 LSHNEELTNFLKSLSD---Q------PRDLP-HLLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp CCSCHHHHHHHHTTTT---C------TTCCC-CEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred hcCCHHHHHHHHHHHh---h------CCCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 36788888773 2220 0 01222 599999999999999999888 643
No 194
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.37 E-value=0.003 Score=50.30 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=25.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.++||.|+||||||+|++.+++.+.+.++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~ 79 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVE 79 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 38999999999999999999988766443
No 195
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.37 E-value=0.0019 Score=46.16 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=19.7
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
-.+.|+|.||+||||+++.++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 196
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.37 E-value=0.002 Score=44.38 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=20.4
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...++|+++|++|+|||+|++....
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 3458999999999999999876654
No 197
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.36 E-value=0.0021 Score=43.39 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+|+|+|.||+|||++.+.+++...-
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 6899999999999999988775444
No 198
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.36 E-value=0.0026 Score=41.49 Aligned_cols=27 Identities=33% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.|+|+|.||+|||++.+.. +-....++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEE
Confidence 6899999999999999988 44344333
No 199
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.36 E-value=0.0019 Score=44.30 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.6
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...++|+++|++++|||+|++....
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 4468999999999999999987753
No 200
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.36 E-value=0.002 Score=44.88 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.7
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
-.++|+++|++++|||+|++....-
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4589999999999999999877654
No 201
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.35 E-value=0.002 Score=50.52 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=28.5
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
+|+ .+.|+|++|+|||||||.++.+.+. .|++.|.
T Consensus 28 ~Ge-~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 65 (372)
T 1g29_1 28 DGE-FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDK 65 (372)
T ss_dssp TTC-EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred CCC-EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCE
Confidence 444 6789999999999999999999865 5666664
No 202
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.35 E-value=0.002 Score=44.10 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.3
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...++|+++|+|++|||+|++....
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 3458999999999999999887664
No 203
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.35 E-value=0.002 Score=50.38 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=29.7
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
+|+ -+.|+|++|+|||||||.++.+.+. .|++.|...
T Consensus 28 ~Ge-~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 67 (359)
T 2yyz_A 28 DGE-FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLV 67 (359)
T ss_dssp TTC-EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred CCC-EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEEC
Confidence 344 6789999999999999999999865 577777543
No 204
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.35 E-value=0.0021 Score=44.20 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=21.7
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.-.++|+++|++++|||+|++....-
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 33579999999999999999877643
No 205
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.34 E-value=0.007 Score=45.90 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=31.4
Q ss_pred EEEeeCCCChhhHHHHHHHHH--hCCceEEEeecccCCCCceEEEEec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEK--IGPRAIFTTGQGASAVGLTAYVGKH 86 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~--l~prsv~~sG~~ss~~GLTasv~r~ 86 (98)
.|.++|++|+|||+||+.+.. +.|+. ....|..++.....+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~----~~~vT~~p~~i~~~~~ 79 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG----SGIVTRRPLVLQLQKI 79 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCC----SSSCCCSCEEEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCC----CCcccCcceEEEEecC
Confidence 899999999999999999987 55763 1234556666666554
No 206
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.34 E-value=0.0022 Score=43.24 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=22.0
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.-.++|+++|++++|||+|++....-
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34589999999999999999877643
No 207
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.34 E-value=0.0021 Score=50.94 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=29.8
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
+|+ -+.|+|++|+|||||||.++.+.+. .|++.|...
T Consensus 28 ~Ge-~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 28 EGE-FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM 67 (381)
T ss_dssp TTC-EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred CCC-EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence 444 6789999999999999999999875 667766543
No 208
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.34 E-value=0.0021 Score=44.21 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.0
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|+++|++++|||+|++....-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 469999999999999999877653
No 209
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.34 E-value=0.0026 Score=43.01 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=21.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-+|+|+|.||+|||++.+.+++....
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 37999999999999999988765433
No 210
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.34 E-value=0.0015 Score=47.69 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=24.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc-eEEEee
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR-AIFTTG 71 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr-sv~~sG 71 (98)
.++||.|+||||||+|++.+++.+.. .+++++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~ 71 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSG 71 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEEEECT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 48999999999999999998765544 344443
No 211
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.33 E-value=0.0021 Score=44.71 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=20.8
Q ss_pred CceEEEeeCCCChhhHHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
-.++|+++|++++|||+|++....
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 458999999999999999987654
No 212
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.32 E-value=0.0029 Score=53.71 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=27.4
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhCCce-EEEee
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIGPRA-IFTTG 71 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~prs-v~~sG 71 (98)
-.-++||+|+||||||+|++.++...+.. +++++
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~ 271 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEc
Confidence 33489999999999999999999887664 44554
No 213
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.32 E-value=0.0021 Score=50.24 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=28.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
-+.|+|++|+|||||||.++.+.+. .|++.|...
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 79 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRV 79 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEEC
Confidence 6789999999999999999999865 567766543
No 214
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.32 E-value=0.0018 Score=52.42 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=24.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc-eEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR-AIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr-sv~~sG 71 (98)
.+||+|+||||||+|++.++..... -+++++
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~is~ 82 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHISG 82 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeCCH
Confidence 5999999999999999999876543 344444
No 215
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.32 E-value=0.0041 Score=43.03 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=26.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
..|.|+|.||+|||++++.+++..+...+++-
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 47999999999999999999998755444443
No 216
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.32 E-value=0.0027 Score=45.86 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-+.|+|++|+|||+|++.+..+.|.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 6789999999999999999998873
No 217
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.31 E-value=0.0022 Score=50.39 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=28.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
.+.|+|++|+|||||||.++.+.+. .|++.|...
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 75 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV 75 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC
Confidence 6789999999999999999999865 577777543
No 218
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.31 E-value=0.0019 Score=43.47 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=20.5
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
....++|+++|++|+|||+|++....
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34568999999999999999987653
No 219
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.30 E-value=0.0019 Score=50.72 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=27.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-+.|+|++|+|||||||.++.+.+. .|++.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~ 67 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKT 67 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 6789999999999999999999866 56666653
No 220
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.30 E-value=0.0023 Score=50.15 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=28.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
-+.|+|++|+|||||||.++.+.+. .|++.|...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 67 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV 67 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 6789999999999999999999865 577766543
No 221
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.30 E-value=0.0018 Score=50.37 Aligned_cols=36 Identities=14% Similarity=0.389 Sum_probs=28.8
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
+|+ -+.|+|++|+|||||||.++.+.+. .|++.|..
T Consensus 30 ~Ge-~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~ 68 (353)
T 1oxx_K 30 NGE-RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRL 68 (353)
T ss_dssp TTC-EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred CCC-EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE
Confidence 444 6789999999999999999999865 56666643
No 222
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.29 E-value=0.0017 Score=43.57 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.2
Q ss_pred CceEEEeeCCCChhhHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~ 60 (98)
..++|+++|++++|||+|++...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45899999999999999988763
No 223
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.29 E-value=0.0022 Score=44.58 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.1
Q ss_pred CceEEEeeCCCChhhHHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
..++|+++|++|+|||+|++....
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 368999999999999999987764
No 224
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.29 E-value=0.0034 Score=45.41 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=27.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc-eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR-AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr-sv~~sG~ 72 (98)
..|+|+|.||+|||++.+.+++..+. .+++++-
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D 66 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGD 66 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecH
Confidence 58999999999999999998887653 4566664
No 225
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.29 E-value=0.0025 Score=42.75 Aligned_cols=27 Identities=15% Similarity=0.491 Sum_probs=20.9
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
......+|+++|++++|||+|++....
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 345567999999999999999987653
No 226
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.29 E-value=0.0031 Score=43.86 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=22.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
+|+|+|.||+|||++.+.+++-..-.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 6899999999999999988665544344
No 227
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0029 Score=44.10 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.0
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.-.++|+++|++++|||+|++....-
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence 34589999999999999999877654
No 228
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.27 E-value=0.0022 Score=47.50 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
+++|.|+||+|||+|++.+.+..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 799999999999999998876653
No 229
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.26 E-value=0.002 Score=47.55 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=28.7
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc--eEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR--AIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr--sv~~sG~~ 73 (98)
+|+ .+.|+|++|+||||||+.++.+.+. .|+..|..
T Consensus 25 ~Ge-~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~ 62 (249)
T 2qi9_C 25 AGE-ILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQP 62 (249)
T ss_dssp TTC-EEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEE
T ss_pred CCC-EEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEE
Confidence 443 6889999999999999999998864 56665543
No 230
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.25 E-value=0.005 Score=50.91 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=24.7
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCceE
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPRAI 67 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~prsv 67 (98)
.-++||.|+||||||.+++.+++.+...+
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l~~~~ 516 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKALGIEL 516 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTCEE
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCE
Confidence 34899999999999999999988776543
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.25 E-value=0.0028 Score=44.06 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-|+|+|.||+|||+|.+.+.+..|.
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCcc
Confidence 6889999999999999999887763
No 232
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.24 E-value=0.0035 Score=42.97 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=20.4
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
+|+ .++|+|+||+|||+|++.++..
T Consensus 22 ~G~-~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGF-FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCC-EEEEEcCCCCCHHHHHHHHHHH
Confidence 454 6788999999999999887743
No 233
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.24 E-value=0.0031 Score=44.28 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=23.7
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+|. -+.|+|++|+|||+|++.+....|.
T Consensus 7 ~g~-~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGL-LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCC-EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCc-EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 443 5788999999999999999988765
No 234
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.003 Score=50.67 Aligned_cols=29 Identities=34% Similarity=0.523 Sum_probs=24.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFT 69 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~ 69 (98)
-+||.|+||||||.|.+++++-+...++.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~~~~ 236 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAAFIR 236 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence 49999999999999999998776665443
No 235
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.21 E-value=0.002 Score=47.49 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+|+ .+.|+|++|+||||||+.++.+.+.
T Consensus 30 ~Ge-~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 30 KGD-ILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp TTC-EEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 444 6889999999999999999998765
No 236
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.21 E-value=0.0012 Score=44.50 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=7.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...++|+++|++|+|||+|++....
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~ 42 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTS 42 (208)
T ss_dssp EEEEEEEEC----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHh
Confidence 3458999999999999999886653
No 237
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.21 E-value=0.0023 Score=44.22 Aligned_cols=25 Identities=8% Similarity=0.186 Sum_probs=22.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
..+.|+|.+|+|||||++.++.+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998754
No 238
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.20 E-value=0.0034 Score=42.00 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=22.0
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
...-+|+|.|.||+|||++.+..++....
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34558999999999999999988764333
No 239
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.20 E-value=0.0057 Score=41.95 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=21.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+|+|+|.||+|||++.+..++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998887
No 240
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.18 E-value=0.0028 Score=43.93 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=25.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc--e--EEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR--A--IFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr--s--v~~sG~ 72 (98)
..|.|+|.+|+|||++++.++...+. . +|+.|.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 47899999999999999999876532 2 366664
No 241
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.18 E-value=0.0017 Score=46.65 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=23.1
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+|+ .+.|+|++|+|||+||+.++.+ +.
T Consensus 21 ~Ge-~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 21 TNT-IVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp HCS-EEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhcC-CC
Confidence 454 5788999999999999999998 54
No 242
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.18 E-value=0.0037 Score=49.42 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=29.2
Q ss_pred ccccCceEEEeeCCCChhhHHHHHHH--HHhCCc--------eEEEeeccc
Q psy9645 34 HRVRGDINVLLCGDPGTAKSQFLKYM--EKIGPR--------AIFTTGQGA 74 (98)
Q Consensus 34 ~~~Rg~ihiLliGdpGtGKSqlL~~~--~~l~pr--------sv~~sG~~s 74 (98)
.-.+|. -++|+|+||+|||||++.+ .-+.|. .+|+++..+
T Consensus 174 GI~~Ge-i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 174 GVETGS-ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp SEETTS-EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred CcCCCc-EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 344555 6899999999999999844 334443 788888754
No 243
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.18 E-value=0.0033 Score=49.60 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=30.5
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccC
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGAS 75 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss 75 (98)
+|+ -+.|+|++|+|||||||.+..+.+. .|++.|...+
T Consensus 53 ~Ge-i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~ 93 (366)
T 3tui_C 53 AGQ-IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 93 (366)
T ss_dssp TTC-EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECS
T ss_pred CCC-EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 444 6789999999999999999999865 5777776443
No 244
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.18 E-value=0.0045 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-|+||+|+||||||++++.+++..
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHH
Confidence 489999999999999999887654
No 245
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.16 E-value=0.0025 Score=45.02 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=15.4
Q ss_pred EEEeeCCCChhhHHHHHHHH-HhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYME-KIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~-~l~pr 65 (98)
-+.|+|.+|+|||+|++.++ .+.|.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp EEEEECSCC----CHHHHHHC----C
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 57899999999999999999 88764
No 246
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.15 E-value=0.0024 Score=47.02 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-+++|.|+||+|||+|++.+.+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999887654
No 247
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.15 E-value=0.0028 Score=43.55 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
.|.|+|.||+|||++++.++++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999884
No 248
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.14 E-value=0.0032 Score=42.55 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=23.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.+|+|+|.||+|||++.+.+++.....++
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 47999999999999999988766544443
No 249
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.13 E-value=0.0041 Score=42.11 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.|.|+|.||+||||+.+.+++....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999988875443
No 250
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.12 E-value=0.0034 Score=45.39 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=29.1
Q ss_pred chhHHHHHHH-hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 10 RTWMDDIKEW-TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 10 ~~g~~~iK~a-L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+|++.++.. ...+-. + + ..|+||.|+||+|||++++.+++.
T Consensus 27 ~~g~~~~~~~l~~~l~~-------~---~-~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 27 IVGQEHIVKRLKHYVKT-------G---S-MPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CCSCHHHHHHHHHHHHH-------T---C-CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHc-------C---C-CCeEEEECcCCCCHHHHHHHHHHH
Confidence 5677777776 222211 0 1 127999999999999999988765
No 251
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.12 E-value=0.0032 Score=47.44 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=21.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
-+++|.|+||+|||.|++.+++.+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999988876444
No 252
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.10 E-value=0.0039 Score=47.49 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=24.0
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.-.+.|+|.+|+|||||++.++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 348999999999999999999998765
No 253
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.10 E-value=0.0032 Score=45.05 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=21.4
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...++|+|+|+||+|||+|++.+..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC
Confidence 3468999999999999999998764
No 254
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.09 E-value=0.0032 Score=43.41 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=23.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
..|+|+|.||+|||++.+.+++... ..++++
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg-~~~i~~ 49 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG-YPFIEG 49 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT-CCEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-CEEEeC
Confidence 3699999999999999998877643 234443
No 255
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.09 E-value=0.0031 Score=48.17 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=30.0
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGASA 76 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss~ 76 (98)
.+.|+|++|+|||+||+.+..+.+. .|++.|.....
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~ 120 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQ 120 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTS
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEccc
Confidence 7899999999999999999998765 67777765443
No 256
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.09 E-value=0.0041 Score=41.35 Aligned_cols=25 Identities=8% Similarity=0.158 Sum_probs=21.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.|+|+|.||+|||++.+.+++....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999988875443
No 257
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.08 E-value=0.0052 Score=45.59 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
+++|.|+||+|||+|++.+++.
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999988764
No 258
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.0037 Score=50.26 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=24.0
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.|||.|+||||||.|.++++.-+...++
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~~~f~ 244 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTNATFL 244 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eeEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence 6999999999999999999877665444
No 259
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.08 E-value=0.0038 Score=42.06 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..|+|+|.||+|||++.+.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999988754
No 260
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.07 E-value=0.0039 Score=41.77 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=21.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
..|+|.|.||+|||++.+.+++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3699999999999999998887433
No 261
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.06 E-value=0.0045 Score=41.05 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=21.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.|+|.|.||+|||++.+..++....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999998874343
No 262
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.05 E-value=0.0046 Score=41.44 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=19.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.|+|+|.||+|||++.+.+++.....++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 6999999999999999998876555444
No 263
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.04 E-value=0.0026 Score=47.04 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=26.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc--eEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR--AIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr--sv~~sG~ 72 (98)
.+.|+|++|+|||+||+.++.+.+. .|++.|.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~ 81 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGK 81 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCeEEEECCE
Confidence 7899999999999999999998753 4555554
No 264
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.04 E-value=0.0036 Score=43.35 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=21.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
+|+|+|.||+|||++.+..++-..-.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 6899999999999999988554343333
No 265
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.04 E-value=0.0027 Score=43.67 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=19.6
Q ss_pred ceEEEeeCCCChhhHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~ 60 (98)
.++|+++|+||+|||+|++...
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999998765
No 266
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.04 E-value=0.0024 Score=43.88 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=20.5
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHH
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~ 60 (98)
....++|+++|++++|||+|++...
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCT
T ss_pred ccCccEEEEECCCCCCHHHHHHHHh
Confidence 3456899999999999999998665
No 267
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.02 E-value=0.0034 Score=43.96 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=20.9
Q ss_pred CceEEEeeCCCChhhHHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...+|+++|++|+|||+|++....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457999999999999999987654
No 268
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0042 Score=49.95 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=23.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.|||.|+||||||.|.++++.-+...++
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~~~~~ 244 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIGANFI 244 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 6999999999999999999876655444
No 269
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.00 E-value=0.0046 Score=44.33 Aligned_cols=27 Identities=11% Similarity=0.322 Sum_probs=20.8
Q ss_pred ceEEEeeCCCChhhHHHHH-HHHHhCCc
Q psy9645 39 DINVLLCGDPGTAKSQFLK-YMEKIGPR 65 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~-~~~~l~pr 65 (98)
.+.|+++||+|+|||.|++ ++.+-++.
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~ 40 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDN 40 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC-
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCC
Confidence 4799999999999999976 45554443
No 270
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.99 E-value=0.0028 Score=43.23 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=23.1
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.......+.|+|+||+|||+|++.+....
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455799999999999999999876543
No 271
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.99 E-value=0.0043 Score=42.78 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..|.|+|.||+||||+.+.++.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 36899999999999999999884
No 272
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.98 E-value=0.0038 Score=41.76 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
.|+|+|.||+|||++.+.+++-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999998877544
No 273
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.98 E-value=0.0041 Score=42.01 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=20.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
-.+|+|++|+|||+||+.+.-+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 467999999999999999987654
No 274
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.98 E-value=0.0037 Score=45.51 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.3
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|.|+|+||+|||+|++.....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999988765
No 275
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.95 E-value=0.0055 Score=48.16 Aligned_cols=49 Identities=22% Similarity=0.162 Sum_probs=31.9
Q ss_pred chhHHHHHHH-hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 10 RTWMDDIKEW-TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 10 ~~g~~~iK~a-L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
.+|++.+|.. ..++--.. .+ ....-++||.|+||||||.|.+.+++...
T Consensus 39 iiG~~~~~~~l~~~~~~~~----~~--~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 39 LVGQENAREACGVIVELIK----SK--KMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EESCHHHHHHHHHHHHHHH----TT--CCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHH----hC--CCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 5678888877 11111001 01 11123799999999999999999887664
No 276
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.95 E-value=0.0032 Score=47.32 Aligned_cols=27 Identities=19% Similarity=0.480 Sum_probs=20.3
Q ss_pred ceEEEeeCCCChhhHHHHHHHHH--hCCc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEK--IGPR 65 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~--l~pr 65 (98)
+++|.++|++|+|||+|++.+.. +.|.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~ 46 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPE 46 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCC
Confidence 46889999999999999998664 4444
No 277
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.94 E-value=0.0044 Score=43.91 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.+.|+|.+|+|||+|++.++.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999998775
No 278
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.94 E-value=0.0032 Score=46.22 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=25.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC-------CceEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG-------PRAIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~-------prsv~~sG~ 72 (98)
+++|.|+||+|||+|++.+.+.. ...+|++..
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 89999999999999999887654 345666643
No 279
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.93 E-value=0.0057 Score=45.61 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=25.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC-ceEEEee
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP-RAIFTTG 71 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p-rsv~~sG 71 (98)
.-|+|+|.||+|||++.+.+.+-.+ ..+++++
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 5799999999999999998877655 3456654
No 280
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.93 E-value=0.0028 Score=49.97 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-+++|.|+||+|||+|++.+++..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999888754
No 281
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.92 E-value=0.0045 Score=45.36 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.2
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|+++|+|++|||+|++....-
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 478999999999999999988653
No 282
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.92 E-value=0.0038 Score=42.12 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..|+|+|.||+|||++.+..++-
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988764
No 283
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.92 E-value=0.0027 Score=43.99 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=21.6
Q ss_pred cCceEEEeeCCCChhhHHHHHH-HHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKY-MEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~-~~~l 62 (98)
.-.++|+++|++|+|||+|++. +..-
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4458999999999999999987 5444
No 284
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.005 Score=49.33 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=23.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.+||.|+||||||.|.++++.-+...++
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~~f~ 211 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDCKFI 211 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTCEEE
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCCCce
Confidence 5999999999999999999877655444
No 285
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.90 E-value=0.004 Score=44.82 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=29.6
Q ss_pred chhHHHHHHH-hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 10 RTWMDDIKEW-TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 10 ~~g~~~iK~a-L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+|++.++.. ...+-. ...-|+||.|+||+|||++++.+++.
T Consensus 19 ~~g~~~~~~~l~~~l~~-----------~~~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 19 VVGQDEVIQRLKGYVER-----------KNIPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp SCSCHHHHHHHHTTTTT-----------TCCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhC-----------CCCCeEEEECcCCcCHHHHHHHHHHH
Confidence 4678888777 333211 11126999999999999999888764
No 286
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.87 E-value=0.0034 Score=53.09 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
|+||+|+||+|||+|++.+++..
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999887654
No 287
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.87 E-value=0.0039 Score=46.24 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=28.0
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhC--C---ceEEEeecc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIG--P---RAIFTTGQG 73 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~--p---rsv~~sG~~ 73 (98)
+|+ .+.|+|++|+|||||||.++.+. + -.|++.|..
T Consensus 45 ~Ge-~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~ 85 (267)
T 2zu0_C 45 PGE-VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD 85 (267)
T ss_dssp TTC-EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE
Confidence 444 68899999999999999999984 2 256666653
No 288
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.87 E-value=0.0053 Score=41.50 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
.|+|+|.||+|||++.+.+++...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999998876433
No 289
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.84 E-value=0.0064 Score=40.74 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=20.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
..|+|+|.||+|||++.+..++...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999987765433
No 290
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.83 E-value=0.0047 Score=42.36 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=26.4
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHH-hCCceEEEeecc
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEK-IGPRAIFTTGQG 73 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~-l~prsv~~sG~~ 73 (98)
.+|+ -++|+|+||+|||+|++.++. -..+.+|++...
T Consensus 18 ~~G~-~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGV-LTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTS-EEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCE-EEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3454 689999999999999887765 123466766543
No 291
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.83 E-value=0.0077 Score=48.56 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=24.1
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCce
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPRA 66 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~prs 66 (98)
.-++||.|+||||||.+++++++.+...
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~~ 265 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGAF 265 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSSE
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 4479999999999999999998876543
No 292
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.83 E-value=0.0043 Score=45.32 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=19.6
Q ss_pred CceEEEeeCCCChhhHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYM 59 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~ 59 (98)
..++|+++|+||+|||+|++..
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L 28 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSL 28 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHH
Confidence 3689999999999999999864
No 293
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.82 E-value=0.0055 Score=45.54 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.1
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+.|.|+|+|++|||+|++.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 368999999999999999988754
No 294
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.79 E-value=0.0015 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=20.5
Q ss_pred cCceEEEeeCCCChhhHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~ 60 (98)
+..++|+++|+||+|||+|++...
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 456899999999999999986654
No 295
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.79 E-value=0.0036 Score=43.06 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=21.5
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..++|+++|++|+|||+|++....-
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4579999999999999999877543
No 296
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.79 E-value=0.0033 Score=47.49 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=23.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.+.|+|++|+|||+||+.++.+.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 7889999999999999999999875
No 297
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.79 E-value=0.0047 Score=45.99 Aligned_cols=32 Identities=28% Similarity=0.574 Sum_probs=26.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc--eEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR--AIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr--sv~~sG~ 72 (98)
.+.|+|++|+|||||||.++.+.|. .|+..|.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~ 65 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLLPYSGNIFINGM 65 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCE
Confidence 6889999999999999999988743 4555554
No 298
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.79 E-value=0.0056 Score=46.95 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=21.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.+.|+|++|+|||+|++.+..+.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 78999999999999999999886
No 299
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.79 E-value=0.006 Score=42.20 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=20.4
Q ss_pred ceEEEeeCCCChhhHHHHHHHH-HhCC
Q psy9645 39 DINVLLCGDPGTAKSQFLKYME-KIGP 64 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~-~l~p 64 (98)
...|+++|++|+|||+|++... ..+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 4689999999999999976554 4443
No 300
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.78 E-value=0.011 Score=39.91 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.|.|+|.+|+|||++++..+...
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999988763
No 301
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.78 E-value=0.015 Score=40.31 Aligned_cols=37 Identities=35% Similarity=0.550 Sum_probs=25.4
Q ss_pred cccCceEEEeeCCCChhhHHH-HHHHHHh----CCceEEEeec
Q psy9645 35 RVRGDINVLLCGDPGTAKSQF-LKYMEKI----GPRAIFTTGQ 72 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSql-L~~~~~l----~prsv~~sG~ 72 (98)
-.+|+ -+++.|+||+|||+| ++++.+. -.+.+|++-.
T Consensus 27 l~~G~-l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 27 FPEGT-TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTC-EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCe-EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 34554 788999999999999 4555442 2346676654
No 302
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.77 E-value=0.0062 Score=41.11 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=21.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
..|+|+|.||+|||++.+.+++....
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999988765444
No 303
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.76 E-value=0.0077 Score=43.69 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=24.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
..|.|+|.+|+|||++++.+++...--.+-+|
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g 59 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSG 59 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCC
Confidence 37999999999999999999855433333333
No 304
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.76 E-value=0.0047 Score=51.37 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=22.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-++||+|+||||||.+.+.+++.+
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999998875
No 305
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.75 E-value=0.0066 Score=48.62 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=27.7
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHHhCC----ceEEEeecc
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEKIGP----RAIFTTGQG 73 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~l~p----rsv~~sG~~ 73 (98)
-.+|+ .++|+|+||+|||+|++.++.+.+ +.+|+++..
T Consensus 278 i~~G~-i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee 319 (525)
T 1tf7_A 278 FFKDS-IILATGATGTGKTLLVSRFVENACANKERAILFAYEE 319 (525)
T ss_dssp EESSC-EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CCCCc-EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 34554 789999999999999998876544 235666543
No 306
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.74 E-value=0.0065 Score=42.49 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
..|+|+|.||+|||++.+.+++...-
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 47999999999999999988765443
No 307
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.74 E-value=0.0063 Score=45.47 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.4
Q ss_pred CceEEEeeCCCChhhHHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
..++|+++|+|++|||+|++....
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~ 25 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFS 25 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999987543
No 308
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.74 E-value=0.0071 Score=41.60 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=22.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
..|+|+|.||+|||++.+.+++.....++
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 49 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQI 49 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 47999999999999999988764443333
No 309
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.74 E-value=0.0053 Score=45.16 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=21.4
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|+++|+|++|||+|++....-
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 479999999999999999988654
No 310
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.006 Score=47.00 Aligned_cols=34 Identities=12% Similarity=0.035 Sum_probs=26.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC---------C--ceEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG---------P--RAIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~---------p--rsv~~sG~~ 73 (98)
-++||.|+||||||.+++++.+-. | ..+|+++..
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 389999999999999999887644 1 356777654
No 311
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.72 E-value=0.0051 Score=44.33 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
|+||.|+||+|||++++.+++.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999887765
No 312
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.70 E-value=0.0063 Score=41.41 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=21.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
..|+|.|.||+|||++.+.+++..+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999998876433
No 313
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.70 E-value=0.0095 Score=43.34 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=23.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEe
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTT 70 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~s 70 (98)
.|+|+|.||+|||++.+.+++..+...+++
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 589999999999999998887544444543
No 314
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.70 E-value=0.0068 Score=40.52 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=21.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
..|+|+|.||+|||++.+..++....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36999999999999999988765443
No 315
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.70 E-value=0.0064 Score=47.58 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.5
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..+++.|+|+||+|||+|++.+...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4589999999999999999988765
No 316
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.70 E-value=0.0058 Score=45.22 Aligned_cols=33 Identities=24% Similarity=0.200 Sum_probs=26.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC----ceEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP----RAIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p----rsv~~sG~ 72 (98)
-.++++|++|+||||||+.+..+.+ ..|++.|.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 3799999999999999999987753 35666665
No 317
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.68 E-value=0.0075 Score=42.44 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=22.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
..|+|+|.||+|||++.+.+++-..-
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 47999999999999999988865544
No 318
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.67 E-value=0.0054 Score=42.81 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=22.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
+|+|+|.||+|||++.+.+++-..-.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i 29 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQI 29 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 6899999999999999988764443333
No 319
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.67 E-value=0.0073 Score=41.07 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
..|+|+|.||+|||++++.+++..+
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999998876543
No 320
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.66 E-value=0.0053 Score=44.90 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=22.2
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-.+|+ -++|+|+||+|||+|++.++...
T Consensus 32 l~~G~-~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 32 ARGGE-VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp BCTTC-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCe-EEEEEeCCCCCHHHHHHHHHHHH
Confidence 34555 58899999999999998776554
No 321
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.66 E-value=0.0056 Score=48.69 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=21.9
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
+++|.|+|++|+|||+|++.+..+.
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578999999999999999988764
No 322
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.66 E-value=0.0046 Score=44.67 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.1
Q ss_pred CceEEEeeCCCChhhHHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
....|+++|+|++|||+|++....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHC
Confidence 346999999999999999998864
No 323
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.65 E-value=0.012 Score=42.56 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=26.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~sG~~ 73 (98)
.+++.|++|+|||+|++.+.+-.+ .+|++...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~~~~~ 64 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNERP-GILIDCRE 64 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS-EEEEEHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHHcC-cEEEEeec
Confidence 899999999999999998877654 67777643
No 324
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.0074 Score=48.92 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=23.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.|||.|+||||||.|.++++.-+...++
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~~~fi 245 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTSATFL 245 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHTCEEE
T ss_pred CCceECCCCchHHHHHHHHHHHhCCCEE
Confidence 6999999999999999999877655444
No 325
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.63 E-value=0.0041 Score=47.32 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=23.4
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
..-+.|+|.+|+|||||++.++.+.+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccc
Confidence 357899999999999999999988654
No 326
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.62 E-value=0.012 Score=45.00 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=27.4
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCC---ceEEEeec
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGP---RAIFTTGQ 72 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~p---rsv~~sG~ 72 (98)
+....+.|+|.||+|||+|++.+..+.+ ..+.+.+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE
Confidence 3345899999999999999999986642 35666654
No 327
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.61 E-value=0.0033 Score=53.34 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=24.1
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+-.-++||+|+||||||+|++.++..+..
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 33448999999999999999999877643
No 328
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.60 E-value=0.007 Score=40.94 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=21.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
..|+|+|.||+|||++.+.+++...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999998877544
No 329
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.60 E-value=0.0073 Score=42.77 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=22.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFT 69 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~ 69 (98)
.|+|+|.||+|||++.+.+++...-.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 58999999999999999887654433333
No 330
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.0074 Score=49.26 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.|||.|+||||||.|.+++++-+...++
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~~~fi 272 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTDATFI 272 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHTCEEE
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCCCeE
Confidence 6999999999999999999876655444
No 331
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.58 E-value=0.0065 Score=44.13 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.8
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
+..++|+++|++|+|||+|++....
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3468999999999999999998764
No 332
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.57 E-value=0.0043 Score=47.41 Aligned_cols=32 Identities=28% Similarity=0.635 Sum_probs=26.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
.++++|.+|+||||||+.+..+.|. .|.+.|.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT 207 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe
Confidence 8999999999999999999998764 4555554
No 333
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.57 E-value=0.0077 Score=42.76 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=23.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEEE
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIFT 69 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~~ 69 (98)
.+|+|+|.||+|||++.+.+++-..-.++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 589999999999999999887654443333
No 334
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.55 E-value=0.0056 Score=47.13 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=27.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
-.++|+|.+|+||||||+.+..+.|. .|.+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~ 211 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV 211 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc
Confidence 38999999999999999999998764 5666553
No 335
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.54 E-value=0.0071 Score=45.22 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
.|.|+|+||+|||+|++.+...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 7999999999999999998764
No 336
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.54 E-value=0.0075 Score=43.21 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=21.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.-|.|+|.+|+|||||++.++.+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998864
No 337
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.53 E-value=0.01 Score=42.87 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=23.6
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
++. -+.|+|++|+|||+|++.+.+..|.
T Consensus 18 ~g~-~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 18 GRK-TLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp SCC-EEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCC-EEEEECcCCCCHHHHHHHHHhhCCc
Confidence 444 4788999999999999999988773
No 338
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.50 E-value=0.0066 Score=48.79 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.0
Q ss_pred cCce-EEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDI-NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~i-hiLliGdpGtGKSqlL~~~~~l 62 (98)
+|.+ ++.|+|.+|+|||+||+.+..+
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4543 6999999999999999999877
No 339
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.49 E-value=0.009 Score=40.05 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=19.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.|.|.|.||+|||++.+..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999887643
No 340
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.49 E-value=0.0092 Score=43.05 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=24.5
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCceEEEe
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPRAIFTT 70 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~prsv~~s 70 (98)
...|+|.|.||+|||++.+.+++-..-.++.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 35899999999999999998876444444433
No 341
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.49 E-value=0.013 Score=39.74 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=21.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..|.|+|.+|+|||++.+.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999998876
No 342
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.49 E-value=0.012 Score=40.38 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=22.3
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
...|+|+|.||+|||++.+.+++-..-
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 357999999999999999888765544
No 343
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.48 E-value=0.0063 Score=47.57 Aligned_cols=39 Identities=21% Similarity=0.168 Sum_probs=28.0
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHHhC----CceEEEeeccc
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEKIG----PRAIFTTGQGA 74 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~l~----prsv~~sG~~s 74 (98)
-.+|. -++|.|+||+|||+|+..++..+ -+.+|+++..+
T Consensus 58 i~~G~-i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 58 YPRGR-IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp EETTE-EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred ccCCc-EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 34554 68899999999999977665442 24678887654
No 344
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.46 E-value=0.0074 Score=42.13 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=25.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC-----ceEEEee
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP-----RAIFTTG 71 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p-----rsv~~sG 71 (98)
..|+|+|.||+|||++.+.+++..+ +.+++.+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 4789999999999999999887654 2566654
No 345
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.46 E-value=0.012 Score=47.05 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
-++||.|+||+|||++++.+++.+..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 38999999999999999999877643
No 346
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.45 E-value=0.012 Score=39.78 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-|.|.|.||+||||+.+..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999887764
No 347
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.43 E-value=0.01 Score=40.44 Aligned_cols=24 Identities=8% Similarity=-0.051 Sum_probs=21.6
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
..|.|+|.||+|||++.+..++..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998875
No 348
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.42 E-value=0.0094 Score=44.72 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=22.1
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.+. -+.|+|.+|+|||+|++.+. +.+.
T Consensus 164 ~G~-i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 164 EGF-ICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp TTC-EEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred cCc-EEEEECCCCCCHHHHHHHHH-HhhC
Confidence 444 57899999999999999999 6543
No 349
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.41 E-value=0.021 Score=45.31 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
.+.|+|+||+|||+||+.++...|
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~ 182 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHP 182 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCc
Confidence 578999999999999999988755
No 350
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.40 E-value=0.0052 Score=47.75 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.++++|++|+|||+||+.+..+.++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccC
Confidence 8999999999999999998877643
No 351
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.39 E-value=0.0054 Score=48.46 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=27.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc--eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR--AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr--sv~~sG~~s 74 (98)
.+.|+|++|+|||+|||.++.+.+. .|++.|...
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i 84 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSW 84 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBT
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEEC
Confidence 7899999999999999999998652 355555543
No 352
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=95.39 E-value=0.0098 Score=43.13 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=21.6
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.+..++|+++|+|++|||+|++....
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~ 177 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceeEEEEECCCCCChHHHHHHHHh
Confidence 34558999999999999999876653
No 353
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.38 E-value=0.022 Score=46.81 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=28.3
Q ss_pred EEeeCCCChhhHHHHHHHHHhC-CceEEEeecccCCCCceEEEEec
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIG-PRAIFTTGQGASAVGLTAYVGKH 86 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~-prsv~~sG~~ss~~GLTasv~r~ 86 (98)
+.++|++|+|||+||+.+..+. |+. +|. .+-.|......+.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~-vt~~g~~i~~~~~ 89 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGI-VTRCPLVLKLKKL 89 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-----------CCCSCEEEEEEEC
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCe-EEEcCEEEEEecC
Confidence 9999999999999999999886 431 343 4556666555554
No 354
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.37 E-value=0.0069 Score=45.29 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=23.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.+. -+.|+|.+|+|||+||+.+..+.+.
T Consensus 168 ~ge-iv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 168 KGK-ISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SSS-EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred cCC-eEEEECCCCCcHHHHHHHhcccccc
Confidence 344 5789999999999999999887654
No 355
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.37 E-value=0.011 Score=45.57 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=24.6
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+|. .+.|+|++|+|||+||+.++.+...
T Consensus 70 ~Gq-~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 70 IGQ-RIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TTC-EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 444 7899999999999999999998765
No 356
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.34 E-value=0.0089 Score=41.98 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
..|+|+|.||+|||++.+.+++-...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 47999999999999999988764443
No 357
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.33 E-value=0.0031 Score=42.96 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=20.3
Q ss_pred cCceEEEeeCCCChhhHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~ 60 (98)
...++|+++|++++|||+|++...
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSB
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 345899999999999999987553
No 358
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.33 E-value=0.0079 Score=44.05 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
+|.++|+|++|||+|++....-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 7999999999999999988654
No 359
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.32 E-value=0.0088 Score=43.34 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.5
Q ss_pred CceEEEeeCCCChhhHHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
..++|+++|++|+|||+|++....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999998875
No 360
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.31 E-value=0.012 Score=44.54 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=28.9
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCC---ceEEEeecccC
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGP---RAIFTTGQGAS 75 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~p---rsv~~sG~~ss 75 (98)
++. .+.|+|.+|+||||+++.++.+.+ ..|++.|....
T Consensus 101 ~g~-vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGR-VVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp SSS-EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred CCe-EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 454 788899999999999998887653 36777776543
No 361
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.006 Score=48.97 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=28.4
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc----e-EEEee
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR----A-IFTTG 71 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr----s-v~~sG 71 (98)
+|+ .+.|+|.+|+|||+|||.++.+.++ . |++.|
T Consensus 137 ~Ge-~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 137 EGP-RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp SCC-CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 444 6899999999999999999999864 3 77776
No 362
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.29 E-value=0.0098 Score=48.33 Aligned_cols=29 Identities=28% Similarity=0.184 Sum_probs=24.7
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.+|+ .+.|+|++|+|||||||.++.+.++
T Consensus 45 ~~Ge-~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 45 KEGM-VVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp CTTS-EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCC-EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4555 6799999999999999999998754
No 363
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.29 E-value=0.0095 Score=44.77 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.3
Q ss_pred EEEeeCCCChhhHHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~ 61 (98)
+|.|+|+|++|||+|++....
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999998764
No 364
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.28 E-value=0.012 Score=46.80 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=27.5
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeec
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQ 72 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~ 72 (98)
+|. .+.|+|++|+|||+||+.++.+.+. .+...|.
T Consensus 156 ~Gq-~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 156 RGQ-RMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp TTC-EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 444 7899999999999999999999865 3344454
No 365
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.23 E-value=0.0074 Score=49.02 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=23.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+++++|.+|+||||+|+.+..+.|.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC
Confidence 6999999999999999999998875
No 366
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.23 E-value=0.017 Score=41.12 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.3
Q ss_pred EEeeCCCChhhHHHHHHHHHhCCceE
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIGPRAI 67 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~prsv 67 (98)
|.|+|++|+||++|++.+.+-.|-.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 78999999999999999887777544
No 367
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.22 E-value=0.0066 Score=47.08 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=25.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc----eEEEeec
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR----AIFTTGQ 72 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr----sv~~sG~ 72 (98)
-.++++|++|+||||+|+.+..+.+. .|++.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 37999999999999999999877543 4555553
No 368
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.22 E-value=0.013 Score=47.61 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=28.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
.+.|+|++|+|||+|++.+..+.++ .|++.|...
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~ 407 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV 407 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEh
Confidence 7899999999999999999998765 677777543
No 369
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.22 E-value=0.012 Score=42.31 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
.|+|+|.||+||+|..+.+++-..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 589999999999999888776543
No 370
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.21 E-value=0.011 Score=40.79 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=19.8
Q ss_pred CceEEEeeCCCChhhHHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
....++++|++|+|||+|++....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999876653
No 371
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.21 E-value=0.0094 Score=43.53 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.9
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
...|.++|+|++|||+|++.+...
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCC
Confidence 358999999999999999988643
No 372
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.21 E-value=0.011 Score=40.54 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=20.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..|.|+|.||+|||++.+..++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999988764
No 373
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.20 E-value=0.012 Score=42.83 Aligned_cols=30 Identities=10% Similarity=0.005 Sum_probs=22.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
-++|+|.||+|||+|.+.+++-.+- .+++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~-~~i~~ 32 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW-PVVAL 32 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC-CEEEC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC-eEEec
Confidence 4789999999999999887765443 34444
No 374
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.20 E-value=0.0095 Score=41.68 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=21.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
..|+|+|.||+|||++.+.+++-..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999998876544
No 375
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.18 E-value=0.014 Score=44.69 Aligned_cols=25 Identities=40% Similarity=0.688 Sum_probs=21.8
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
....|.|+|.||+|||+|++.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999988764
No 376
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.16 E-value=0.0082 Score=44.93 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=22.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
.-+.|+|.+|+|||||++.++.+.+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 377
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.13 E-value=0.0093 Score=43.40 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=20.3
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.+|+ -++|+|+||+|||+|++.++.
T Consensus 28 ~~G~-i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGT-VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTS-EEEEEESTTSSHHHHHHHHHH
T ss_pred cCCC-EEEEEcCCCCCHHHHHHHHHH
Confidence 3555 688999999999999887664
No 378
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.11 E-value=0.016 Score=41.96 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=26.5
Q ss_pred EEEeeCCCChhhHHHHHHHHH-hCCceEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEK-IGPRAIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~-l~prsv~~sG~~ 73 (98)
.+++.|++|+|||+|++.+.+ +..+.+|++...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 899999999999999987765 434567887654
No 379
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.09 E-value=0.013 Score=43.52 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
++|+.|+||||||++...+++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999977777664
No 380
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.09 E-value=0.012 Score=43.46 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=23.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
-.|.|+|.||+|||++++.+++.....++
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~ 77 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFF 77 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 37999999999999999999875444333
No 381
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.08 E-value=0.012 Score=40.20 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=20.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..|.|+|.||+|||++.+..++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988764
No 382
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.08 E-value=0.012 Score=45.02 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=22.6
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+.+-|++++|.+|+|||++++.+...
T Consensus 32 ~~~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 32 DRTNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp TBCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccCceEEEcCCCCCHHHHHHHHHHH
Confidence 346679999999999999999977643
No 383
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.08 E-value=0.017 Score=49.78 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=24.8
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.-.|||.|+||||||.|+|.+++-+...+|
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~ 267 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFF 267 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 347999999999999999999877655444
No 384
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.06 E-value=0.011 Score=47.03 Aligned_cols=26 Identities=35% Similarity=0.700 Sum_probs=23.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
..+.|+|.||+|||+|++.+..+.+.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p 95 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNE 95 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 38999999999999999999987654
No 385
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.06 E-value=0.01 Score=47.11 Aligned_cols=33 Identities=24% Similarity=0.172 Sum_probs=27.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
.++++|++|+||||+|+.+..+.+. .|++.+..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 6999999999999999998876543 57777753
No 386
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.05 E-value=0.01 Score=45.69 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=20.0
Q ss_pred ceEEEeeCCCChhhHHHHHHHHH
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
+++|+++|++|+|||+|++.+..
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHhC
Confidence 46899999999999999998643
No 387
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.05 E-value=0.013 Score=43.27 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.+||.|+||+|||++++.+++..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999876543
No 388
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.04 E-value=0.012 Score=40.92 Aligned_cols=24 Identities=8% Similarity=0.081 Sum_probs=21.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
.-+.|+|.+|+|||+|++.+....
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999988764
No 389
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.02 E-value=0.0085 Score=46.45 Aligned_cols=28 Identities=14% Similarity=0.347 Sum_probs=20.5
Q ss_pred cccCceE-EEeeCCCChhhHHHHHHHHHh
Q psy9645 35 RVRGDIN-VLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 35 ~~Rg~ih-iLliGdpGtGKSqlL~~~~~l 62 (98)
+.|..+. |.|+|+||+|||+|++.....
T Consensus 174 r~~~~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -----CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred hhhcCCcEEEEECCCCCCHHHHHHHHHCC
Confidence 3444455 999999999999999988765
No 390
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.01 E-value=0.013 Score=42.49 Aligned_cols=23 Identities=43% Similarity=0.700 Sum_probs=20.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..|+|+|-||+|||++.+.+++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999988764
No 391
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.00 E-value=0.011 Score=47.90 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=28.7
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
.+.|+|++|+|||+|++.+..+.++ .|++.|...
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 407 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 407 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEET
T ss_pred EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEc
Confidence 7899999999999999999998765 577777543
No 392
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.99 E-value=0.011 Score=48.22 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=29.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGAS 75 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss 75 (98)
.+.|+|++|+|||+|++.+..+.++ .|++.|....
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR 409 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhh
Confidence 7899999999999999999998765 5777775443
No 393
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.99 E-value=0.016 Score=43.96 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+++|.|+||||||.|.+.+++..+-
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcc
Confidence 7999999999999999999886543
No 394
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.96 E-value=0.014 Score=46.12 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=23.1
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
+++....+.|+|.||+|||+|++.+..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 344456899999999999999999987
No 395
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.95 E-value=0.016 Score=45.44 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=23.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceE
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAI 67 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv 67 (98)
-.++|+|.||+|||+|++.++....-.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g~~ 197 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGGKA 197 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCcE
Confidence 3789999999999999999987654433
No 396
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.94 E-value=0.016 Score=44.48 Aligned_cols=61 Identities=11% Similarity=0.169 Sum_probs=37.3
Q ss_pred HHHHHHH-hhhcCCcccCCC-C--CccccCceEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeeccc
Q psy9645 13 MDDIKEW-TNIPGNQQAGAS-E--KHRVRGDINVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGA 74 (98)
Q Consensus 13 ~~~iK~a-L~L~GG~~~~~~-~--g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~s 74 (98)
.+.++.. ..+++......- + -...++ --+.|+|.+|+||||+++.++.+.++ .|+..|...
T Consensus 100 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~g-~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~ 167 (328)
T 3e70_C 100 EEAVKEAVSEILETSRRIDLIEEIRKAEKP-YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDT 167 (328)
T ss_dssp HHHHHHHHHHHSCCSSCCCHHHHHHSSCSS-EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHHHHHHHhCCccccchhhhcccCCCC-eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecc
Confidence 3445555 556776431110 0 001244 47889999999999999988876533 566666544
No 397
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.94 E-value=0.011 Score=47.44 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=24.2
Q ss_pred ccccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 34 HRVRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 34 ~~~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...|..++|.++|+|++|||+|++....
T Consensus 219 ~~~r~~~kV~ivG~~nvGKSSLln~L~~ 246 (462)
T 3geh_A 219 ELLRTGLKVAIVGRPNVGKSSLLNAWSQ 246 (462)
T ss_dssp HHHHHCEEEEEEECTTSSHHHHHHHHHH
T ss_pred hhhcCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 4567778999999999999999998764
No 398
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.92 E-value=0.014 Score=43.53 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.8
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...+.++++|.|++|||+|++....
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCceEEEEecCCCchHHHHHHHhc
Confidence 3468999999999999999998764
No 399
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.91 E-value=0.019 Score=39.03 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=22.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
.|.|.|.||+|||++.+.+++...-.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~ 31 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYL 31 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence 5889999999999999998875454344
No 400
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.91 E-value=0.015 Score=39.32 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=18.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
-.+|+|++|+|||+||.++.-+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999988743
No 401
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.91 E-value=0.015 Score=43.44 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.3
Q ss_pred eEEEe--eCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLL--CGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLl--iGdpGtGKSqlL~~~~~l~ 63 (98)
-+++| .|+||+|||+|++.+.+..
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 37888 9999999999999887553
No 402
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.89 E-value=0.029 Score=42.68 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=27.6
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHHh--CC--------ceEEEeeccc
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEKI--GP--------RAIFTTGQGA 74 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~l--~p--------rsv~~sG~~s 74 (98)
-.+|. -++|.|+||+|||+|+..++.- .| +.+|++...+
T Consensus 119 l~~G~-i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 119 IESMA-ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp BCSSE-EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CCCCe-EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 34554 6889999999999997655442 22 5778887653
No 403
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.88 E-value=0.019 Score=39.87 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=21.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..|.|.|.+|+|||++++.++++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHc
Confidence 57999999999999999999884
No 404
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=94.87 E-value=0.018 Score=41.56 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.5
Q ss_pred ccCceEEEeeCCC---------ChhhHHHHHHHHH
Q psy9645 36 VRGDINVLLCGDP---------GTAKSQFLKYMEK 61 (98)
Q Consensus 36 ~Rg~ihiLliGdp---------GtGKSqlL~~~~~ 61 (98)
....++|+++|+| ++|||+|++....
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 4456899999999 9999999987775
No 405
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.85 E-value=0.016 Score=45.47 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
+.|.|+|.|++|||+|++.+..-
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999988864
No 406
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.85 E-value=0.013 Score=46.57 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=23.0
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
+.+....+.|+|.|++|||+|++.+...
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3455578999999999999999988754
No 407
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=94.85 E-value=0.014 Score=44.18 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=20.7
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHH
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~ 60 (98)
.+..++|+++|+|++|||+|++...
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~ 186 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLK 186 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTC
T ss_pred ccCcceEEEECCCCccHHHHHHHHh
Confidence 3456799999999999999988664
No 408
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=94.84 E-value=0.021 Score=45.68 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.5
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
....++|+|+|+|++|||+|++....
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~ 63 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIG 63 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC
T ss_pred cccceEEEEECCCCCCHHHHHHHHhc
Confidence 45568999999999999999987764
No 409
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.81 E-value=0.017 Score=42.64 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=22.7
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.+.|.|.|.||+|||++.+.+++...-
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999988765443
No 410
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.80 E-value=0.012 Score=41.19 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=21.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.+.|+|++|+|||+|++.+..+.++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5789999999999999998877543
No 411
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.78 E-value=0.015 Score=41.34 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=27.4
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCceEEEeec
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQ 72 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG~ 72 (98)
.+| .-|.|+|..|+||||+++.++.+ ...+...+.
T Consensus 18 ~~g-~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~~~ 52 (230)
T 2vp4_A 18 TQP-FTVLIEGNIGSGKTTYLNHFEKY-KNDICLLTE 52 (230)
T ss_dssp CCC-EEEEEECSTTSCHHHHHHTTGGG-TTTEEEECC
T ss_pred CCc-eEEEEECCCCCCHHHHHHHHHhc-cCCeEEEec
Confidence 445 47899999999999999999888 444666654
No 412
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.75 E-value=0.027 Score=42.28 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=27.9
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHH-Hh-CC--------ceEEEeeccc
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYME-KI-GP--------RAIFTTGQGA 74 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~-~l-~p--------rsv~~sG~~s 74 (98)
-.+|. -++|.|+||+|||+|+..++ .. .| +.+|++...+
T Consensus 104 l~~G~-i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 104 IETRT-MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp EETTS-EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCCc-EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 34554 68999999999999966554 43 23 5788887754
No 413
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=94.75 E-value=0.019 Score=45.01 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
+..++|+|+|+|++|||+|++....-
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~ 345 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLG 345 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcC
Confidence 44689999999999999999887654
No 414
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.71 E-value=0.019 Score=44.79 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.8
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..++|.++|+|++|||+|++....-
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCC
Confidence 4589999999999999999987653
No 415
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.71 E-value=0.024 Score=42.18 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=24.3
Q ss_pred ccCceEEEeeCCCChhhHHH-HHHHHHhCC
Q psy9645 36 VRGDINVLLCGDPGTAKSQF-LKYMEKIGP 64 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSql-L~~~~~l~p 64 (98)
.||..+|++.|.||+|||++ ++.+..++-
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 58889999999999999999 666666543
No 416
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.70 E-value=0.02 Score=40.67 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=23.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
.|.|+|.||+|||++.+.+++...-.++-++
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 6999999999999999998874443344433
No 417
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.69 E-value=0.024 Score=42.13 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=18.7
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHH
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~ 60 (98)
.+|. -++|.|+||+|||+|+..++
T Consensus 96 ~~g~-i~~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 96 ESQS-VTEFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp ETTE-EEEEEESTTSSHHHHHHHHH
T ss_pred cCCe-EEEEECCCCCCHHHHHHHHH
Confidence 4454 68999999999999965444
No 418
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.69 E-value=0.062 Score=40.55 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=28.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC---ceEEEeecccC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP---RAIFTTGQGAS 75 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p---rsv~~sG~~ss 75 (98)
--+.|+|.+|+||||+++.++.+.+ ..|+..|....
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 4788999999999999998887653 36777776543
No 419
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.67 E-value=0.015 Score=45.54 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=22.9
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
+|. -+.|+|.||+|||+|++.+..+.+
T Consensus 214 ~G~-~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGR-ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTS-EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCC-EEEEECCCCccHHHHHHHHhcccc
Confidence 444 578999999999999999997765
No 420
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.66 E-value=0.019 Score=42.98 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
-.|.++|+|++|||+|++....
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999998764
No 421
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.63 E-value=0.015 Score=45.36 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
+.+.|+|.||+|||+|++.+...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988765
No 422
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.58 E-value=0.016 Score=47.10 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=27.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQG 73 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ 73 (98)
-.+.|+|++|+|||+||+.++.+.+. .|++.|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 47889999999999999999988655 56666653
No 423
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.58 E-value=0.02 Score=41.69 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=19.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-|+|+|.||+||+|..+.+++-.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999988776654
No 424
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.57 E-value=0.016 Score=42.81 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
+.++++|.||+|||+|++....-
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 68999999999999999987743
No 425
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.57 E-value=0.0095 Score=45.34 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=21.8
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
.+.|+|++|+|||+||+.+.-+++
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 678999999999999999988876
No 426
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.55 E-value=0.0096 Score=40.80 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=20.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p 64 (98)
-|.|+|.+|+||||+++.+.+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999998876643
No 427
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.54 E-value=0.02 Score=43.47 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.....++++|+||+|||+|++.....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35579999999999999999987654
No 428
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.54 E-value=0.021 Score=44.00 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=23.4
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
...-+.|+|.+|+|||||++.+..+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346799999999999999999988754
No 429
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.52 E-value=0.017 Score=47.15 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=29.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGAS 75 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss 75 (98)
.+.++|++|+|||+|++.+..+.++ .|++.|....
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~ 420 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIR 420 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGG
T ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhh
Confidence 8899999999999999999998865 5677665443
No 430
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.51 E-value=0.023 Score=44.21 Aligned_cols=28 Identities=36% Similarity=0.470 Sum_probs=22.0
Q ss_pred CccccCceEEEeeCCCChhhHHHHHHHH
Q psy9645 33 KHRVRGDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 33 g~~~Rg~ihiLliGdpGtGKSqlL~~~~ 60 (98)
....+..+.|||+|.+|+|||||+|...
T Consensus 27 ~~~~~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 27 GERSARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp ----CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHhcCccEEEEECCCCCcHHHHHHHHH
Confidence 4456778999999999999999998774
No 431
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.49 E-value=0.029 Score=41.11 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=22.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCC-ceEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGP-RAIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~p-rsv~~sG 71 (98)
.+|+.|+||+|||++++.+++... .-+++++
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTTEEEEEEET
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 456667799999999998886654 4455553
No 432
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.48 E-value=0.022 Score=46.31 Aligned_cols=28 Identities=21% Similarity=0.500 Sum_probs=24.4
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+|+ .+.|+|.+|+|||+|||.++.+.+.
T Consensus 311 ~Ge-~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 311 KGE-VIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp TTC-EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 444 6889999999999999999998765
No 433
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.48 E-value=0.016 Score=47.25 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=24.2
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.+|+ -+.|+|++|+|||||||.++.+.++
T Consensus 23 ~~Ge-i~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 23 KNNT-ILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp CTTE-EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCC-EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3555 5678999999999999999988755
No 434
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.43 E-value=0.025 Score=44.62 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.5
Q ss_pred CceEEEeeCCCChhhHHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
....|+|+|.||+|||++.+..++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999887664
No 435
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.41 E-value=0.029 Score=42.09 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=25.9
Q ss_pred cccCceEEEeeCCCChhhHHHH-HHHHHhC---CceEEEeec
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFL-KYMEKIG---PRAIFTTGQ 72 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL-~~~~~l~---prsv~~sG~ 72 (98)
-.+|+ -++|.|.||+|||+|+ +++.+++ .+.+|.+..
T Consensus 65 l~~G~-l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 65 YKRRN-FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp BCTTC-EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCc-EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 34554 6889999999999994 4554544 356677754
No 436
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=94.41 E-value=0.016 Score=46.53 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=23.2
Q ss_pred ccccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 34 HRVRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 34 ~~~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...|..++|.++|+|++|||+|++....
T Consensus 228 ~~~r~~~kV~ivG~~nvGKSSLln~L~~ 255 (476)
T 3gee_A 228 RIVSEGVSTVIAGKPNAGKSTLLNTLLG 255 (476)
T ss_dssp HHHHHCEEEEEECCTTSSHHHHHHHCC-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567778999999999999999987643
No 437
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.021 Score=47.44 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=24.2
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+|+ .+.|+|++|+||||||+.++.+.+.
T Consensus 102 ~Ge-i~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 102 PGQ-VLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp TTS-EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCC-EEEEECCCCChHHHHHHHHhcCCCC
Confidence 454 6889999999999999999998765
No 438
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.39 E-value=0.018 Score=48.69 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=23.1
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
..++||+|+||||||.+++++++.++
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35999999999999999999988763
No 439
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.39 E-value=0.063 Score=44.15 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=36.6
Q ss_pred HHHHHHH-hhhcCCcccCCCCCccccCceEEEeeCCCChhhHHHHHHHHHhCC---ceEEEeecc
Q psy9645 13 MDDIKEW-TNIPGNQQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYMEKIGP---RAIFTTGQG 73 (98)
Q Consensus 13 ~~~iK~a-L~L~GG~~~~~~~g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l~p---rsv~~sG~~ 73 (98)
...++.. ..+++...... +-...+| --++|+|.+|+|||||++.++.+.. ..|++.+..
T Consensus 268 ~~~l~~~l~~~l~~~~~~I-sl~i~~G-eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 268 YGLLKEEMGEILAKVDEPL-NVEGKAP-FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp HHHHHHHHHHHHHTTBCCC-CCCSCTT-EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHHhCCCCCCc-eeeccCC-eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 4445555 45555433221 1122344 4688999999999999998887653 367776543
No 440
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.38 E-value=0.035 Score=47.77 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.8
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEE
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIF 68 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~ 68 (98)
-.+||.|+||||||.|.++++.-+...++
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~ 540 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceE
Confidence 46999999999999999999988766544
No 441
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.37 E-value=0.026 Score=44.23 Aligned_cols=38 Identities=18% Similarity=0.401 Sum_probs=26.0
Q ss_pred CccccCceEEEeeCCCChhhHHHHHHHHHh-CCceEEEee
Q psy9645 33 KHRVRGDINVLLCGDPGTAKSQFLKYMEKI-GPRAIFTTG 71 (98)
Q Consensus 33 g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l-~prsv~~sG 71 (98)
|.-.++.+ ++|.|+||+|||+|+..++.- --+.+|++.
T Consensus 118 GGi~~gsv-iLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 118 GHRYASGM-VIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp TEEEESEE-EEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCCcE-EEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 33455654 689999999999997765542 124567766
No 442
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.36 E-value=0.013 Score=42.88 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.0
Q ss_pred EEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+.|+|++|+|||+||+.++.+.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhccccc
Confidence 578999999999999999887653
No 443
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=94.35 E-value=0.028 Score=44.27 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=24.9
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
...|...|.|||-|.+|||+|++.+.+-
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~ 95 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGT 95 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSB
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCC
Confidence 4678889999999999999999998764
No 444
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.34 E-value=0.018 Score=45.18 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=19.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
++|.|+|.|++|||+|++.+..-
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 37899999999999999987643
No 445
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=94.33 E-value=0.011 Score=47.63 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=23.8
Q ss_pred cccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
..|..+.|.|+|+|++|||+|++....-
T Consensus 239 ~~r~~~kV~ivG~pnvGKSSLln~L~~~ 266 (482)
T 1xzp_A 239 LLNRGLRMVIVGKPNVGKSTLLNRLLNE 266 (482)
T ss_dssp HHHHCEEEEEECCHHHHTCHHHHHHHHH
T ss_pred hccCCCEEEEECcCCCcHHHHHHHHHCC
Confidence 4556689999999999999999887754
No 446
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.32 E-value=0.038 Score=39.65 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=22.8
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
....|.|.|.||+|||++.+.+++...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346799999999999999998887544
No 447
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.30 E-value=0.02 Score=47.35 Aligned_cols=29 Identities=24% Similarity=0.167 Sum_probs=24.6
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.+|+ .+.|+|++|+||||||+.++.+.+.
T Consensus 115 ~~Ge-~~~LiG~NGsGKSTLlkiL~Gll~p 143 (607)
T 3bk7_A 115 KDGM-VVGIVGPNGTGKTTAVKILAGQLIP 143 (607)
T ss_dssp CTTS-EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCC-EEEEECCCCChHHHHHHHHhCCCCC
Confidence 3554 6899999999999999999988754
No 448
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.28 E-value=0.019 Score=46.83 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=23.0
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.+.|+|++|+|||+||+.++.+.++
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6889999999999999999998765
No 449
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.27 E-value=0.025 Score=46.80 Aligned_cols=28 Identities=21% Similarity=0.500 Sum_probs=24.3
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
+|+ .+.|+|++|+|||||||.++.+.+.
T Consensus 381 ~Ge-i~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 381 KGE-VIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp TTC-EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344 6889999999999999999998765
No 450
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.22 E-value=0.036 Score=39.88 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=21.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
..|.|.|.||+||||+++.+++..+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999998887654
No 451
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.19 E-value=0.036 Score=39.19 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=22.1
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
......|.|.|-+|+|||++.+..++.
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHh
Confidence 444557889999999999999988876
No 452
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.17 E-value=0.039 Score=38.13 Aligned_cols=32 Identities=28% Similarity=0.271 Sum_probs=25.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
..|.|+|.||+|||++.+.+++...-.++-++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 36899999999999999998886555455443
No 453
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.12 E-value=0.026 Score=44.29 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
..|+|+|+||+|||+|++.+..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999987753
No 454
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.11 E-value=0.014 Score=47.34 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=28.9
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGAS 75 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss 75 (98)
.+.++|++|+|||+|++.+..+.++ .|++.|..-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~ 406 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIK 406 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGG
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 7899999999999999999988765 5777775433
No 455
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.09 E-value=0.047 Score=42.00 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=27.3
Q ss_pred cccCceEEEeeCCCChhhHHHHHH-HHHhC---CceEEEeeccc
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLKY-MEKIG---PRAIFTTGQGA 74 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~~-~~~l~---prsv~~sG~~s 74 (98)
-.+|. -++|.|+||+|||+|+.. +..+. -+.+|++...+
T Consensus 58 l~~G~-iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 58 LPRGR-VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp EETTS-EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred ccCCe-EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 34565 588899999999999554 44443 35788877643
No 456
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.06 E-value=0.021 Score=46.54 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=29.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc---eEEEeecccC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR---AIFTTGQGAS 75 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr---sv~~sG~~ss 75 (98)
.+.++|++|+|||+|++.+..+.++ .|++.|....
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~ 408 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR 408 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcc
Confidence 7899999999999999999998765 5777776543
No 457
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.04 E-value=0.03 Score=39.51 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=18.5
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
-.+|+|++|+|||+||.++.-+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999987643
No 458
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.99 E-value=0.017 Score=43.76 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.9
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
..|.++|+|++|||+|++.+..
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g 53 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVG 53 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTT
T ss_pred CeEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998764
No 459
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.96 E-value=0.01 Score=45.47 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=20.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~ 63 (98)
..+.|+|.||+|||+|++.+..+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 378999999999999999987654
No 460
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.94 E-value=0.029 Score=43.82 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.6
Q ss_pred EEEeeCCCChhhHHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~ 61 (98)
.|.|+|+|++|||+|++....
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~ 23 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVK 23 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999987753
No 461
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=93.88 E-value=0.03 Score=43.25 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=22.4
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
...++|.++|++++|||+|++....
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~ 30 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITG 30 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4568999999999999999998876
No 462
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.87 E-value=0.036 Score=43.53 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=25.6
Q ss_pred cccCceEEEeeCCCChhhHHHHH-HHHHhCC----ceEEEeec
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLK-YMEKIGP----RAIFTTGQ 72 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~-~~~~l~p----rsv~~sG~ 72 (98)
-.+|+ -++|.|+||+|||+|+. .+..+++ +.+|.+..
T Consensus 200 l~~G~-liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 200 FQRSD-LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp BCTTC-EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCC-EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 34555 68899999999999955 4445543 35666654
No 463
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.82 E-value=0.032 Score=43.55 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.2
Q ss_pred eEEEeeCCCChhhHHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~ 61 (98)
..|.|+|+|++|||+|++....
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEE
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999987653
No 464
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.80 E-value=0.035 Score=43.32 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=28.1
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC---ceEEEeeccc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP---RAIFTTGQGA 74 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p---rsv~~sG~~s 74 (98)
--++|+|.+|+||||+++.++.+.+ ..|+..|...
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 4789999999999999998887653 4677777654
No 465
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=93.77 E-value=0.038 Score=46.21 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=22.9
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
.+..++|+++|+|++|||+|++....
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg 91 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIG 91 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHT
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45678999999999999999998874
No 466
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.77 E-value=0.039 Score=43.55 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
.+|+|+|.||+|||++.+.+++...
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3799999999999999998776543
No 467
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.75 E-value=0.038 Score=43.30 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=19.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
++++.|.||||||+++..+...+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 99999999999999988765443
No 468
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.73 E-value=0.044 Score=45.00 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.3
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCC
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGP 64 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~p 64 (98)
..+.|+|.+|+|||||++.++...+
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 4799999999999999999987764
No 469
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.72 E-value=0.034 Score=42.76 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.0
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
+ ++|+|++|+|||+||..++-.
T Consensus 25 ~-~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 I-TVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp E-EEEECCTTSSHHHHHHHHHHH
T ss_pred e-EEEECCCCCCHHHHHHHHHHH
Confidence 5 458999999999999988855
No 470
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.70 E-value=0.039 Score=41.44 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=23.1
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
..-|.|+|.+|+|||+|++.+..+.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 357999999999999999988877654
No 471
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.67 E-value=0.035 Score=46.03 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.2
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCce
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRA 66 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prs 66 (98)
-+.|+|.+|+||||||+.++.+.+..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p~ 405 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKPD 405 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 37899999999999999999998663
No 472
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=93.65 E-value=0.042 Score=42.61 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.6
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.++|+|++|+|||+||+.+.-+.+.
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcc
Confidence 5679999999999999999987643
No 473
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.62 E-value=0.057 Score=41.82 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=27.2
Q ss_pred cccCceEEEeeCCCChhhHHHHH-HHHHhC---CceEEEeeccc
Q psy9645 35 RVRGDINVLLCGDPGTAKSQFLK-YMEKIG---PRAIFTTGQGA 74 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSqlL~-~~~~l~---prsv~~sG~~s 74 (98)
-.+|. -++|.|+||+|||+|.. ++..++ .+.+|++...+
T Consensus 60 l~~G~-ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 60 LPMGR-IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp EETTS-EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred ccCCe-EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 34555 57888999999999954 444433 36788887543
No 474
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.60 E-value=0.066 Score=42.35 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=27.9
Q ss_pred cccCceEEEeeCCCChhhHHH-HHHHHHhCC----ceEEEeecc
Q psy9645 35 RVRGDINVLLCGDPGTAKSQF-LKYMEKIGP----RAIFTTGQG 73 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSql-L~~~~~l~p----rsv~~sG~~ 73 (98)
-.+|+ =++|.|.||+|||+| ++++.+++. +.+|++...
T Consensus 239 l~~G~-l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 239 ARGGE-VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCTTC-EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred cCCCe-EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 44565 568999999999999 666777763 467777653
No 475
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.57 E-value=0.048 Score=40.26 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.0
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
....|.|.|.||+|||++.+..+++
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999988865
No 476
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=93.50 E-value=0.05 Score=41.94 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=22.5
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+..++|.++|++++|||+|++.....
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 455689999999999999999887653
No 477
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.47 E-value=0.041 Score=41.54 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=17.3
Q ss_pred eEEEeeCCCChhhHHHHHHHH
Q psy9645 40 INVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~ 60 (98)
++ +|+|++|+|||+||.++.
T Consensus 25 ~~-~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 25 IN-LIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EE-EEECCTTSSHHHHHHHHH
T ss_pred eE-EEECCCCCCHHHHHHHHH
Confidence 44 699999999999999774
No 478
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=93.38 E-value=0.054 Score=41.79 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.1
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.++|.++|++++|||+|++.....
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 579999999999999998887653
No 479
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.29 E-value=0.065 Score=40.73 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=19.8
Q ss_pred CceEEEeeCCCChhhHHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
....|.++|.||+|||+|+.....
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999876543
No 480
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.15 E-value=0.045 Score=41.08 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=18.4
Q ss_pred EEEeeCCCChhhHHHHHHHHH
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~ 61 (98)
.+||.|+||+||+++.+..++
T Consensus 26 a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCchHHHHHHHHHH
Confidence 499999999999999887664
No 481
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.13 E-value=0.047 Score=40.83 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-.+|+|++|+|||+||+.+.-++
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTS
T ss_pred cEEEECCCCCcHHHHHHHHHHHh
Confidence 46799999999999999998665
No 482
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.07 E-value=0.065 Score=40.59 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=20.5
Q ss_pred ceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 39 DINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 39 ~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
...+.++|.||+|||+|++.+...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 357889999999999999988654
No 483
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=93.04 E-value=0.061 Score=42.62 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=21.1
Q ss_pred cCceEEEeeCCCChhhHHHHHHHHH
Q psy9645 37 RGDINVLLCGDPGTAKSQFLKYMEK 61 (98)
Q Consensus 37 Rg~ihiLliGdpGtGKSqlL~~~~~ 61 (98)
+..++|.++|++++|||+|+.....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~ 55 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLY 55 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999887643
No 484
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.03 E-value=0.043 Score=42.85 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=19.4
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.-|+|+|.||+|||++.+..++-
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999876553
No 485
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.90 E-value=0.055 Score=37.68 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=17.3
Q ss_pred EEEeeCCCChhhHHHH-HHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFL-KYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL-~~~~~l 62 (98)
-+++.|+||+|||++| +.+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999996 666554
No 486
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.89 E-value=0.066 Score=37.44 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.0
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
-+.++|.+|+|||+|++.+...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5789999999999998877654
No 487
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=92.83 E-value=0.075 Score=40.97 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=23.0
Q ss_pred ccccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 34 HRVRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 34 ~~~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
.+.|..+.+||+|...+||||++|...-+
T Consensus 2 ~~~~~~~klLlLG~geSGKSTi~KQmkii 30 (327)
T 3ohm_A 2 ADARRELKLLLLGTGESGKSTFIKQMRII 30 (327)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred chhcccceEEEEcCCCccHHHHHHHHHHH
Confidence 35688899999999999999999876544
No 488
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=92.81 E-value=0.045 Score=44.83 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.0
Q ss_pred ccCceEEEeeCCCChhhHHHHHHHH
Q psy9645 36 VRGDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 36 ~Rg~ihiLliGdpGtGKSqlL~~~~ 60 (98)
....-|+|++|.+|+|||++|+.+.
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li 188 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMI 188 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHH
T ss_pred cccCceEEEECCCCCCHHHHHHHHH
Confidence 3445699999999999999999764
No 489
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.81 E-value=0.091 Score=37.17 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.5
Q ss_pred eEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
..|.+.|.+|+|||++++.+++-.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 36899999999999999999887653
No 490
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.76 E-value=0.084 Score=37.66 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=20.9
Q ss_pred EEeeCCCChhhHHHHHHHHHhCCceEEEe
Q psy9645 42 VLLCGDPGTAKSQFLKYMEKIGPRAIFTT 70 (98)
Q Consensus 42 iLliGdpGtGKSqlL~~~~~l~prsv~~s 70 (98)
+|++|.+++|||+|....+.-..+.+|+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~~~~~~yia 30 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGDAPQVLYIA 30 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhcCCCeEEEe
Confidence 79999999999999664442244556654
No 491
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.75 E-value=0.06 Score=42.16 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=26.1
Q ss_pred cccCceEEEeeCCCChhhHHH-HHHHHHhCC----ceEEEeec
Q psy9645 35 RVRGDINVLLCGDPGTAKSQF-LKYMEKIGP----RAIFTTGQ 72 (98)
Q Consensus 35 ~~Rg~ihiLliGdpGtGKSql-L~~~~~l~p----rsv~~sG~ 72 (98)
-.+|+ -++|.|.||+|||+| ++.+.+++. +.+|.+..
T Consensus 197 l~~G~-l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 197 LGPGS-LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCTTC-EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cCCCc-EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34555 688899999999999 445555542 46777765
No 492
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.61 E-value=0.12 Score=40.30 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=27.4
Q ss_pred ccccCceEEEeeCCCChhhHHHH-HHHHHhC---CceEEEeeccc
Q psy9645 34 HRVRGDINVLLCGDPGTAKSQFL-KYMEKIG---PRAIFTTGQGA 74 (98)
Q Consensus 34 ~~~Rg~ihiLliGdpGtGKSqlL-~~~~~l~---prsv~~sG~~s 74 (98)
.-.+|.+ ++|.|+||+|||+|+ .++.+++ -+.+|++...+
T Consensus 70 Gl~~G~l-i~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 70 GIPRGRI-TEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA 113 (366)
T ss_dssp SEETTSE-EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CccCCcE-EEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4456664 666899999999995 4555443 35788877643
No 493
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=92.60 E-value=0.051 Score=41.84 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEeeCCCChhhHHHHHHHHHh
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l 62 (98)
.|.|+|+|++|||+|++.+..-
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eeeeeCCCCCCHHHHHHHHHcC
Confidence 5789999999999999977654
No 494
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.48 E-value=0.076 Score=43.47 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=19.7
Q ss_pred eEEEeeCCCChhhHHHHHHHHHh
Q psy9645 40 INVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 40 ihiLliGdpGtGKSqlL~~~~~l 62 (98)
-.+++.|.||||||++++.+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 38999999999999998877654
No 495
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.40 E-value=0.076 Score=40.98 Aligned_cols=28 Identities=25% Similarity=0.531 Sum_probs=25.1
Q ss_pred CceEEEeeCCCChhhHHHHHHHHHhCCc
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYMEKIGPR 65 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~~l~pr 65 (98)
.+..+|+.|++||||+.+.+++...++|
T Consensus 159 ~~~~vli~Ge~GtGK~~lAr~ih~~s~r 186 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVVARLIHKLSDR 186 (387)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCCeEEecCCCcCHHHHHHHHHHhcCC
Confidence 3467899999999999999999999876
No 496
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.39 E-value=0.11 Score=37.00 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=21.9
Q ss_pred EEEeeCCCChhhHHHHHH-HHHh-------CC-ceEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKY-MEKI-------GP-RAIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~-~~~l-------~p-rsv~~sG 71 (98)
.+|+.|.||+|||.+... +... .. |.+|+++
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~ 46 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTN 46 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEec
Confidence 678999999999998544 3332 12 6677666
No 497
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=92.37 E-value=0.094 Score=40.57 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=22.6
Q ss_pred CccccCceEEEeeCCCChhhHHHHHHHHHh
Q psy9645 33 KHRVRGDINVLLCGDPGTAKSQFLKYMEKI 62 (98)
Q Consensus 33 g~~~Rg~ihiLliGdpGtGKSqlL~~~~~l 62 (98)
....+..+.+||+|...+||||++|...-+
T Consensus 26 ~~~~~~~~klLlLG~geSGKST~~KQmkii 55 (353)
T 1cip_A 26 GEKAAREVKLLLLGAGESGKSTIVKQMKII 55 (353)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhhcccceEEEEcCCCCCchhHHHHHHHh
Confidence 445678999999999999999999887654
No 498
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=92.34 E-value=0.06 Score=41.39 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.4
Q ss_pred CceEEEeeCCCChhhHHHHHHHH
Q psy9645 38 GDINVLLCGDPGTAKSQFLKYME 60 (98)
Q Consensus 38 g~ihiLliGdpGtGKSqlL~~~~ 60 (98)
.+-|++++|.+|+|||++++.+.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li 74 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELA 74 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHH
Confidence 46699999999999999976543
No 499
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=92.31 E-value=0.08 Score=41.17 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=20.4
Q ss_pred EEEeeCCCChhhHHHHHHHHHhC
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIG 63 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~ 63 (98)
-++|+|++|+|||+||+.+.-++
T Consensus 28 ~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHhc
Confidence 67899999999999999998654
No 500
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.31 E-value=0.12 Score=39.96 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=24.3
Q ss_pred EEEeeCCCChhhHHHHHHHHHhCCceEEEee
Q psy9645 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71 (98)
Q Consensus 41 hiLliGdpGtGKSqlL~~~~~l~prsv~~sG 71 (98)
.|+|+|.+|+|||+|.+.+++-.+- .+++.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~-~iis~ 36 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPC-ELISV 36 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCE-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEec
Confidence 6899999999999998888877663 45554
Done!