RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9645
(98 letters)
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 32.2 bits (72), Expect = 0.005
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 41 NVLLCGDPGTAKSQFLKYMEKIGP 64
VL+ GD GT KS ++ + + P
Sbjct: 30 GVLVFGDRGTGKSTAVRALAALLP 53
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 27.4 bits (59), Expect = 0.24
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGASAVGLTA 81
I + G+ G+ K+Q + + G S + +
Sbjct: 34 ETQAI-TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 78
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 27.2 bits (59), Expect = 0.30
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 26 QQAGASEKHRVRGDINVLLCGDPGTAKSQFLKYM 59
QQ S++ + VLL G P + K+ +
Sbjct: 30 QQTKNSDRTPLVS---VLLEGPPHSGKTALAAKI 60
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 26.8 bits (59), Expect = 0.44
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPR 65
+ VL+ G+ G K + + K+ R
Sbjct: 21 CAECPVLITGESGVGKEVVARLIHKLSDR 49
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 26.7 bits (58), Expect = 0.48
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 8/49 (16%)
Query: 16 IKEWT---NIPGNQQAGASE-----KHRVRGDINVLLCGDPGTAKSQFL 56
++EW+ Q E K + +L+ G G KS +
Sbjct: 1 VREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTV 49
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 26.6 bits (57), Expect = 0.55
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 36 VRGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGASAVGLTAYVGKHPTTKEWTVE 95
G I L G+ T KSQ + + G + + P +
Sbjct: 32 ETGSI-TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQ 90
>d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine
phosphorylase {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 234
Score = 25.9 bits (56), Expect = 0.97
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 38 GDI--NVLLCGDPGTAK--SQFLKYMEKIGPRAIFTTGQG 73
G++ VL+ GDPG A+ S L+ + F G
Sbjct: 9 GEVAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTG 48
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 25.7 bits (55), Expect = 1.1
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 36 VRGDINVLLCGDPGTAKSQFL 56
+ I +L G GT K+ +
Sbjct: 24 FKDSI-ILATGATGTGKTLLV 43
>d1q1ga_ c.56.2.1 (A:) Putative uridine phosphorylase {Plasmodium
falciparum [TaxId: 5833]}
Length = 243
Score = 25.6 bits (55), Expect = 1.2
Identities = 9/66 (13%), Positives = 14/66 (21%), Gaps = 9/66 (13%)
Query: 38 GDI--NVLLCGDPGTAKSQFLKYMEKIGPRA------IFTTGQGASAVGLTAYVGKHPTT 89
I VL+ GDPG + + A ++
Sbjct: 11 EQITPVVLVVGDPGRVD-KIKVVCDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGC 69
Query: 90 KEWTVE 95
E
Sbjct: 70 AVCFEE 75
>d1odka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Thermus thermophilus [TaxId: 274]}
Length = 234
Score = 25.6 bits (55), Expect = 1.2
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 38 GDI--NVLLCGDPGTAK---SQFLKYMEKIGPRAIFTTGQG 73
GD+ VLL GDPG A+ FL+ + G
Sbjct: 10 GDVAERVLLPGDPGRAEWIAKTFLQNPRRYNDHRGLWGYTG 50
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 25.3 bits (54), Expect = 1.3
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 32 EKHRVRGDI--NVLLCGDPGTAKSQFLKYMEK 61
E ++RG++ +VLL G PG K+ +
Sbjct: 26 EAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 57
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 36 VRGDINVLLCGDPGTAKSQFL 56
G L+ G GT K+ F
Sbjct: 24 PIGRS-TLVSGTSGTGKTLFS 43
>d1rxya_ c.56.2.1 (A:) Uridine phosphorylase {Escherichia coli
[TaxId: 562]}
Length = 250
Score = 25.1 bits (54), Expect = 1.6
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 33 KHRVRGDINVLLCGDPGTAKSQFLKYMEKI 62
K+ ++G ++ GDP + + M+K
Sbjct: 10 KNDLQGATLAIVPGDPDRVE-KIAALMDKP 38
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 25.0 bits (53), Expect = 1.6
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTT 70
VL G + K+ + R T+
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTS 31
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 25.1 bits (53), Expect = 1.6
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 36 VRGDINVLLCGDPGTAKSQFL 56
G I + G+ T K+Q
Sbjct: 21 ETGSI-TEMFGEFRTGKTQIC 40
>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3
{Caenorhabditis elegans [TaxId: 6239]}
Length = 98
Score = 24.4 bits (53), Expect = 1.8
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 61 KIGPRAIFTTGQGASAVGLTAYVGKHPTTKEWTV 94
+G R T G + G AYVG + V
Sbjct: 16 MVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWV 49
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 24.7 bits (52), Expect = 2.3
Identities = 4/24 (16%), Positives = 8/24 (33%), Gaps = 1/24 (4%)
Query: 36 VRGDINVLLCGDPGTAKSQFLKYM 59
+ G G+ K+Q +
Sbjct: 32 ESQSV-TEFAGVFGSGKTQIMHQS 54
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 24.2 bits (51), Expect = 3.5
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 39 DINVLLCGDPGTAKSQFLK 57
++ + + G G KS +
Sbjct: 2 EVKLAIFGRAGVGKSALVV 20
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 24.2 bits (52), Expect = 3.8
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 41 NVLLCGDPGTAKSQFLKYM-EKIGPRAIFTTGQGASAVGLTAYVG 84
V++ G + K+ + + E +G + + T + + Y
Sbjct: 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS--GYNT 167
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 23.9 bits (50), Expect = 3.9
Identities = 5/24 (20%), Positives = 8/24 (33%), Gaps = 1/24 (4%)
Query: 36 VRGDINVLLCGDPGTAKSQFLKYM 59
I G+ T K+Q +
Sbjct: 35 ESMAI-TEAFGEFRTGKTQLSHTL 57
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 23.9 bits (51), Expect = 4.1
Identities = 3/17 (17%), Positives = 5/17 (29%)
Query: 41 NVLLCGDPGTAKSQFLK 57
L G + K+
Sbjct: 156 YWLFKGPIDSGKTTLAA 172
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 23.9 bits (50), Expect = 4.5
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 39 DINVLLCGDPGTAKSQFLK 57
I +++ G+ KS ++
Sbjct: 2 AIKMVVVGNGAVGKSSMIQ 20
>d1vhwa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Vibrio cholerae [TaxId: 666]}
Length = 237
Score = 23.6 bits (50), Expect = 4.7
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 38 GDI--NVLLCGDPGTAK---SQFLKYMEKIGPRAIFTTGQG 73
GD VL+ GDP AK FL ++ G
Sbjct: 10 GDFADVVLMPGDPLRAKYIAENFLDNAVQVCDVRNMFGYTG 50
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 24.0 bits (51), Expect = 4.8
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 11/58 (18%)
Query: 37 RGDINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQGASAVGLTAYVGKHPTTKEWTV 94
+NV + G+ G+ KS F+ + G G G A G T E
Sbjct: 54 SSVLNVAVTGETGSGKSSFINTL----------RGIGNEEEG-AAKTGVVEVTMERHP 100
>d2ac7a1 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase, PNP
{Bacillus anthracis [TaxId: 1392]}
Length = 231
Score = 23.6 bits (50), Expect = 5.2
Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 38 GDI--NVLLCGDPGTAK 52
G+I ++LL GDP AK
Sbjct: 9 GEIAESILLPGDPLRAK 25
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 23.4 bits (50), Expect = 5.5
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 41 NVLLCGDPGTAKSQFLKYM 59
N LL G+ G K+ + +
Sbjct: 41 NPLLVGESGVGKTAIAEGL 59
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 23.7 bits (50), Expect = 5.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 41 NVLLCGDPGTAKSQFLKYM 59
++L+ G GT KS L+ +
Sbjct: 52 HLLVNGATGTGKSVLLREL 70
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 23.3 bits (49), Expect = 5.7
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 40 INVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71
+ +LL G + KS FLK M +I T G
Sbjct: 3 VKILLLGAGESGKSTFLKQM-RIIHGQDPTKG 33
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 23.4 bits (49), Expect = 6.4
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 39 DINVLLCGDPGTAKSQFLK 57
++ + + GD + KS +
Sbjct: 5 ELRLGVLGDARSGKSSLIH 23
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 23.1 bits (49), Expect = 6.4
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 34 HRVRGDINVLLCGDPGTAKSQFLKYM 59
H + + V L GD G K+ + M
Sbjct: 29 HTEKAIM-VYLNGDLGAGKTTLTRGM 53
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 23.5 bits (49), Expect = 7.0
Identities = 6/21 (28%), Positives = 7/21 (33%), Gaps = 1/21 (4%)
Query: 36 VRGDINVLLCGDPGTAKSQFL 56
V G + L G KS
Sbjct: 27 VAGTV-GALVSPGGAGKSMLA 46
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 23.0 bits (48), Expect = 7.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 39 DINVLLCGDPGTAKSQFLK 57
++ V L GD G KS +
Sbjct: 4 ELKVCLLGDTGVGKSSIMW 22
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 23.4 bits (49), Expect = 7.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 39 DINVLLCGDPGTAKSQFLKYMEKIGPRAIFTTG 71
++ +LL G + KS F+K M I + TTG
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 23.2 bits (48), Expect = 7.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 41 NVLLCGDPGTAKSQFLKYMEK 61
L G PGT K+ L+ + +
Sbjct: 45 RATLLGRPGTGKTVTLRKLWE 65
>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli
[TaxId: 562]}
Length = 289
Score = 23.2 bits (49), Expect = 7.7
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 47 DPGTAKSQFLKYMEKIGPRAIFTTGQGASA 76
+ A ++ G +AI+ +G G +A
Sbjct: 25 NANHAL-----LAQRAGYQAIYLSGGGVAA 49
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 23.0 bits (49), Expect = 8.7
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 36 VRGDINVLLCGDPGTAKS 53
+ VL+ GD G KS
Sbjct: 12 DVYGVGVLITGDSGIGKS 29
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 22.9 bits (49), Expect = 9.1
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 36 VRGDINVLLCGDPGTAKS 53
+ VL+ GD G KS
Sbjct: 11 DIYGLGVLITGDSGVGKS 28
>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 215
Score = 23.0 bits (49), Expect = 9.3
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 37 RGDINVLLCGDP----GTAKSQFLKYMEKIGPRAIFTTGQGASAVGLTAYVGKHPTTKEW 92
R ++ ++ DP + + L+ + K P+ I+ +S G+ + K+P +
Sbjct: 129 RAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLF 188
Query: 93 TVEAD 97
TV D
Sbjct: 189 TVAID 193
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 22.9 bits (48), Expect = 9.6
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 41 NVLLCGDPGTAKSQFLKYMEKIGPRAIFTTGQG 73
N+L+ G G K++ + + K+
Sbjct: 51 NILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 83
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 22.7 bits (47), Expect = 9.7
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 40 INVLLCGDPGTAKSQFLK 57
+ V++ GD G K+ +
Sbjct: 3 LKVIILGDSGVGKTSLMN 20
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 23.1 bits (48), Expect = 9.8
Identities = 5/24 (20%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 36 VRGDINVLLCGDPGTAKSQFLKYM 59
G++ +++ G KS F++
Sbjct: 33 RGGEV-IMVTSGSGMGKSTFVRQQ 55
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 113
Score = 22.5 bits (48), Expect = 9.8
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 61 KIGPRAIFTTGQGASAVGLTAYVGKHPTTKEWTV 94
+G R + G YVG + V
Sbjct: 34 SVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWV 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.411
Gapped
Lambda K H
0.267 0.0426 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 371,380
Number of extensions: 14138
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 65
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)