BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9646
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 166 bits (421), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 75/103 (72%), Positives = 90/103 (87%)
Query: 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMIT 167
+LA+ AK K+Y +IDNAPEE+ARGITIN AHVEY+T RHY+HTDCPGHADY+KNMIT
Sbjct: 26 ILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMIT 85
Query: 168 GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
GT+ +DG ILVVAA DG MPQTREHLLLA+QIGV ++VV++NK
Sbjct: 86 GTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNK 128
Score = 163 bits (412), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 89/106 (83%)
Query: 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGR 61
+LL+ +DTYIP P RDL+KPF LPVE YSIPGRGTVVTG LERGI+KKG ECEF G+ +
Sbjct: 184 KLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSK 243
Query: 62 QFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+T VTGIEMFHK LD A+AGD LGALV+G+KR+++ RGL+MAKP
Sbjct: 244 NIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKP 289
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 84/101 (83%)
Query: 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGT 169
A+ +VK Y DID APEE+ARGITIN AHVEY T RHYSH DCPGHADYIKNMITG
Sbjct: 38 AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGA 97
Query: 170 SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
+QMDGAILVV+A DG MPQTREH+LLA+Q+GV IVVF+NK
Sbjct: 98 AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNK 138
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
ELL+ ID YIP PVRD+DKPF +PVE ++I GRGTV TGR+ERG VK G E E G
Sbjct: 201 WELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA 260
Query: 61 RQF-KTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ +T VTG+EM K L E AGD +G L++G+ R+EV RG ++AKP
Sbjct: 261 PETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKP 308
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 84/101 (83%)
Query: 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGT 169
A+ +VK Y DID APEE+ARGITIN AHVEY T RHYSH DCPGHADYIKNMITG
Sbjct: 37 AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGA 96
Query: 170 SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
+QMDGAILVV+A DG MPQTREH+LLA+Q+GV IVVF+NK
Sbjct: 97 AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNK 137
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
ELL+ ID YIP PVRD+DKPF +PVE ++I GRGTV TGR+ERG VK G E E G
Sbjct: 200 WELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA 259
Query: 61 RQF-KTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ +T VTG+EM K L E AGD +G L++G+ R+EV RG ++AKP
Sbjct: 260 PETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKP 307
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 84/101 (83%)
Query: 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGT 169
A+ +VK Y DID APEE+ARGITIN AHVEY T RHYSH DCPGHADYIKNMITG
Sbjct: 37 AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGA 96
Query: 170 SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
+QMDGAILVV+A DG MPQTREH+LLA+Q+GV IVVF+NK
Sbjct: 97 AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNK 137
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
ELL+ ID YIP PVRD+DKPF +PVE ++I GRGTV TGR+ERG VK G E E G
Sbjct: 200 WELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA 259
Query: 61 RQF-KTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ +T VTG+EM K L E AGD +G L++G+ R+EV RG ++AKP
Sbjct: 260 PETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKP 307
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 84/101 (83%)
Query: 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGT 169
A+ +VK Y DID APEE+ARGITIN AHVEY T RHYSH DCPGHADYIKNMITG
Sbjct: 37 AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGA 96
Query: 170 SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
+QMDGAILVV+A DG MPQTREH+LLA+Q+GV IVVF+NK
Sbjct: 97 AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNK 137
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
ELL+ ID YIP PVRD+DKPF +PVE ++I GRGTV TGR+ERG VK G E E G
Sbjct: 200 WELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA 259
Query: 61 RQF-KTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ KT VTG+EM K L E AGD +G L++G+ R+EV RG ++AKP
Sbjct: 260 PETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKP 307
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 84/101 (83%)
Query: 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGT 169
A+ +VK Y DID APEE+ARGITIN AHVEY T RHYSH DCPGHADYIKNMITG
Sbjct: 37 AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGA 96
Query: 170 SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
+QMDGAILVV+A DG MPQTREH+LLA+Q+GV IVVF+NK
Sbjct: 97 AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNK 137
Score = 123 bits (308), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
ELL+ ID YIP PVRD+DKPF +PVE ++I GRGTV TGR+ERG VK G E E G
Sbjct: 200 WELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA 259
Query: 61 RQF-KTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ KT VTG+EM K L E AGD +G L++G+ R+EV RG ++AKP
Sbjct: 260 PETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKP 307
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 84/101 (83%)
Query: 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGT 169
A+ +VK Y DID APEE+ARGITIN AHVEY T RHYSH DCPGHADYIKNMITG
Sbjct: 37 AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGA 96
Query: 170 SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
+QMDGAILVV+A DG MPQTREH+LLA+Q+GV IVVF+NK
Sbjct: 97 AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNK 137
Score = 123 bits (308), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
ELL+ ID YIP PVRD+DKPF +PVE ++I GRGTV TGR+ERG VK G E E G
Sbjct: 200 WELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA 259
Query: 61 RQF-KTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ KT VTG+EM K L E AGD +G L++G+ R+EV RG ++AKP
Sbjct: 260 PETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKP 307
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 84/101 (83%)
Query: 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGT 169
A+ +VK Y DID APEE+ARGITIN AHVEY T RHYSH DCPGHADYIKNMITG
Sbjct: 37 AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGA 96
Query: 170 SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
+QMDGAILVV+A DG MPQTREH+LLA+Q+GV IVVF+NK
Sbjct: 97 AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNK 137
Score = 123 bits (308), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
ELL+ ID YIP PVRD+DKPF +PVE ++I GRGTV TGR+ERG VK G E E G
Sbjct: 200 WELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA 259
Query: 61 RQF-KTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ KT VTG+EM K L E AGD +G L++G+ R+EV RG ++AKP
Sbjct: 260 PETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKP 307
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 84/101 (83%)
Query: 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGT 169
A+ +VK Y DID APEE+ARGITIN AHVEY T RHYSH DCPGHADYIKNMITG
Sbjct: 37 AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGA 96
Query: 170 SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
+QMDGAILVV+A DG MPQTREH+LLA+Q+GV IVVF+NK
Sbjct: 97 AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNK 137
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
ELL+ ID YIP PVRD+DKPF +PVE ++I GRGTV TGR+ERG VK G E E G
Sbjct: 200 WELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA 259
Query: 61 RQF-KTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ KT VTG+EM K L E AGD +G L++G+ R+EV RG ++AKP
Sbjct: 260 PETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKP 307
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 163 bits (412), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 84/101 (83%)
Query: 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGT 169
A+ +VK Y DID APEE+ARGITIN AHVEY T RHYSH DCPGHADYIKNMITG
Sbjct: 37 AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGA 96
Query: 170 SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
+QMDGAILVV+A DG MPQTREH+LLA+Q+GV IVVF+NK
Sbjct: 97 AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNK 137
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
ELL+ ID YIP PVRD+DKPF +PVE ++I GRGTV TGR+ERG VK G E E G
Sbjct: 200 WELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA 259
Query: 61 RQF-KTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ KT VTG+EM K L E AGD +G L++G+ R+EV RG ++AKP
Sbjct: 260 PETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKP 307
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 163 bits (412), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 84/101 (83%)
Query: 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGT 169
A+ +VK Y DID APEE+ARGITIN AHVEY T RHYSH DCPGHADYIKNMITG
Sbjct: 37 AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGA 96
Query: 170 SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
+QMDGAILVV+A DG MPQTREH+LLA+Q+GV IVVF+NK
Sbjct: 97 AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNK 137
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
ELL+ ID YIP PVRD+DKPF +PVE ++I GRGTV TGR+ERG VK G E E G
Sbjct: 200 WELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA 259
Query: 61 RQF-KTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ KT VTG+EM K L E AGD +G L++G+ R+EV RG ++AKP
Sbjct: 260 PETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKP 307
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 73/103 (70%), Positives = 88/103 (85%)
Query: 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMIT 167
+LA+ AK K+Y +IDNAPEE+ARGITIN AHVEY+T RHY+HTDCPGHADY+KN IT
Sbjct: 37 ILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNXIT 96
Query: 168 GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
GT+ +DG ILVVAA DG PQTREHLLLA+QIGV ++VV++NK
Sbjct: 97 GTAPLDGCILVVAANDGPXPQTREHLLLARQIGVEHVVVYVNK 139
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 87/106 (82%)
Query: 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGR 61
+LL+ +DTYIP P RDL+KPF LPVE YSIPGRGTVVTG LERGI+KKG ECEF G+ +
Sbjct: 195 KLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSK 254
Query: 62 QFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+T VTGIE FHK LD A+AGD LGALV+G+KR+++ RGL+ AKP
Sbjct: 255 NIRTVVTGIEXFHKSLDRAEAGDNLGALVRGLKREDLRRGLVXAKP 300
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 83/103 (80%)
Query: 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMIT 167
VLA + + IDNAPEEKARGITIN +HVEY T RHY+H DCPGHADY+KNMIT
Sbjct: 319 VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMIT 378
Query: 168 GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
G +QMDGAILVVAATDG MPQTREH+LL +Q+GV I+VF+NK
Sbjct: 379 GAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 421
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
+EL +D+YIP+P R +DKPF LP+E +SI GRGTVVTGR+ERGI+K G E E G
Sbjct: 474 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 533
Query: 61 RQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
K+T TG+EMF K+LDE +AG+ +G L++G+KR+E+ RG ++AKP
Sbjct: 534 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 580
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 83/103 (80%)
Query: 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMIT 167
VLA + + IDNAPEEKARGITIN +HVEY T RHY+H DCPGHADY+KNMIT
Sbjct: 319 VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMIT 378
Query: 168 GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
G +QMDGAILVVAATDG MPQTREH+LL +Q+GV I+VF+NK
Sbjct: 379 GAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 421
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
+EL +D+YIP+P R +DKPF LP+E +SI GRGTVVTGR+ERGI+K G E E G
Sbjct: 474 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 533
Query: 61 RQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
K+T TG+EMF K+LDE +AG+ +G L++G+KR+E+ RG ++AKP
Sbjct: 534 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 580
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 83/103 (80%)
Query: 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMIT 167
VLA + + IDNAPEEKARGITIN +HVEY T RHY+H DCPGHADY+KNMIT
Sbjct: 34 VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMIT 93
Query: 168 GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
G +QMDGAILVVAATDG MPQTREH+LL +Q+GV I+VF+NK
Sbjct: 94 GAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 136
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
+EL +D+YIP+P R +DKPF LP+E +SI GRGTVVTGR+ERGI+K G E E G
Sbjct: 189 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 248
Query: 61 RQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
K+T TG+EMF K+LDE +AG+ +G L++G+KR+E+ RG ++AKP
Sbjct: 249 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 295
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 83/103 (80%)
Query: 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMIT 167
VLA + + IDNAPEEKARGITIN +HVEY T RHY+H DCPGHADY+KNMIT
Sbjct: 35 VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMIT 94
Query: 168 GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
G +QMDGAILVVAATDG MPQTREH+LL +Q+GV I+VF+NK
Sbjct: 95 GAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 137
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
+EL +D+YIP+P R +DKPF LP+E +SI GRGTVVTGR+ERGI+K G E E G
Sbjct: 190 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 249
Query: 61 RQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
K+T TG+EMF K+LDE +AG+ +G L++G+KR+E+ RG ++AKP
Sbjct: 250 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 296
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 83/103 (80%)
Query: 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMIT 167
VLA + + IDNAPEEKARGITIN +HVEY T RHY+H DCPGHADY+KNMIT
Sbjct: 34 VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMIT 93
Query: 168 GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
G +QMDGAILVVAATDG MPQTREH+LL +Q+GV I+VF+NK
Sbjct: 94 GAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 136
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
+EL +D+YIP+P R +DKPF LP+E +SI GRGTVVTGR+ERGI+K G E E G
Sbjct: 189 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 248
Query: 61 RQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
K+T TG+EMF K+LDE +AG+ +G L++G+KR+E+ RG ++AKP
Sbjct: 249 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 295
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 83/103 (80%)
Query: 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMIT 167
VLA + + IDNAPEEKARGITIN +HVEY T RHY+H DCPGHADY+KNMIT
Sbjct: 34 VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMIT 93
Query: 168 GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
G +QMDGAILVVAATDG MPQTREH+LL +Q+GV I+VF+NK
Sbjct: 94 GAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 136
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
+EL +D+YIP+P R +DKPF LP+E +SI GRGTVVTGR+ERGI+K G E E G
Sbjct: 189 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 248
Query: 61 RQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
K+T TG+EMF K+LDE +AG+ +G L++G+KR+E+ RG ++AKP
Sbjct: 249 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 295
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 83/103 (80%)
Query: 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMIT 167
VLA + + IDNAPEEKARGITIN +HVEY T RHY+H DCPGHADY+KNMIT
Sbjct: 35 VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMIT 94
Query: 168 GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
G +QMDGAILVVAATDG MPQTREH+LL +Q+GV I+VF+NK
Sbjct: 95 GAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 137
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
+EL +D+YIP+P R +DKPF LP+E +SI GRGTVVTGR+ERGI+K G E E G
Sbjct: 190 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 249
Query: 61 RQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
K+T TG+EMF K+LDE +AG+ +G L++G+KR+E+ RG ++AKP
Sbjct: 250 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 296
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 83/103 (80%)
Query: 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMIT 167
VLA + + IDNAPEEKARGITIN +HVEY T RHY+H DCPGHADY+KNMIT
Sbjct: 26 VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMIT 85
Query: 168 GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
G +QMDGAILVVAATDG MPQTREH+LL +Q+GV I+VF+NK
Sbjct: 86 GAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 128
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
+EL +D+YIP+P R +DKPF LP+E +SI GRGTVVTGR+ERGI+K G E E G
Sbjct: 181 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 240
Query: 61 RQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
K+T TG+EMF K+LDE +AG+ +G L++G+KR+E+ RG ++AKP
Sbjct: 241 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 287
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 82/101 (81%)
Query: 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGT 169
A+ + +VK Y DID A EE+ARGITIN AHVEY T RHYSH DC GHADYIKNMITG
Sbjct: 37 AENRNVEVKDYGDIDKAREERARGITINTAHVEYETAKRHYSHVDCRGHADYIKNMITGA 96
Query: 170 SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
+QMDGAILVV+A DG M QTREH+LLA+Q+GV IVVF+NK
Sbjct: 97 AQMDGAILVVSAADGRMRQTREHILLARQVGVRYIVVFMNK 137
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
ELL+ ID YI VRD+DK F + VE ++I GRGTV TGR+ERG VK G E E G
Sbjct: 200 WELLDAIDEYIRTRVRDVDKRFLMRVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA 259
Query: 61 RQF-KTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAK 106
R+ KT VTG+EM K L E AGD +G L++G+ R+EV RG ++AK
Sbjct: 260 RETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAK 306
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 56 FTGYGRQF---KTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMA 105
FTGY RQF T VTG+ + ++ GD + V+ +KR + GL A
Sbjct: 335 FTGYRRQFYFRTTDVTGVVRLRQGVEMVMRGDNVTFTVELIKRVALEEGLRFA 387
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/80 (76%), Positives = 70/80 (87%)
Query: 131 ARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTR 190
ARGITIN +HVEY T RHY+H DCPGHADY+KNMITG +QMDGAILVVAATDG MPQTR
Sbjct: 43 ARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR 102
Query: 191 EHLLLAKQIGVTNIVVFINK 210
EH+LL +Q+GV I+VF+NK
Sbjct: 103 EHILLGRQVGVPYIIVFLNK 122
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
+EL +D+YIP+P R +DKPF LP+E +SI GRGTVVTGR+ERGI+K G E E G
Sbjct: 175 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 234
Query: 61 RQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
K+T TG+EMF K+LDE +AG+ +G L++G+KR+E+ RG ++AKP
Sbjct: 235 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 281
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 68/78 (87%)
Query: 133 GITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREH 192
GITIN +HVEY T RHY+H DCPGHADY+KNMITG +QMDGAILVVAATDG MPQTREH
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 193 LLLAKQIGVTNIVVFINK 210
+LL +Q+GV I+VF+NK
Sbjct: 61 ILLGRQVGVPYIIVFLNK 78
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
+EL +D+YIP+P R +DKPF LP+E +SI GRGTVVTGR+ERGI+K G E E G
Sbjct: 131 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 190
Query: 61 RQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
K+T TG+EMF K+LDE +AG+ +G L++G+KR+E+ RG ++AKP
Sbjct: 191 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 237
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
+EL +D+YIP+P R +DKPF LP+E +SI GRGTVVTGR+ERGI+K G E E G
Sbjct: 131 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 190
Query: 61 RQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
K+T TG+EMF K+LDE +AG+ +G L++G+KR+E+ RG ++AKP
Sbjct: 191 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 237
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 67/78 (85%)
Query: 133 GITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREH 192
GITIN +HVEY T RHY+H D PGHADY+KNMITG +QMDGAILVVAATDG MPQTREH
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 193 LLLAKQIGVTNIVVFINK 210
+LL +Q+GV I+VF+NK
Sbjct: 61 ILLGRQVGVPYIIVFLNK 78
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 7/95 (7%)
Query: 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT 182
+D EE+ RGITI++ +++ T+ ++ D PGH D++KNMITG SQ D AILVV+A
Sbjct: 59 LDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSAR 118
Query: 183 DGAMP-------QTREHLLLAKQIGVTNIVVFINK 210
G QTREHLLLA+ +G+ I+V +NK
Sbjct: 119 KGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNK 153
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 3 LLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQ 62
L+ +D P P + +DKP +PV++ YSIPG GTV GR+E G+++ G + F G
Sbjct: 215 LVEALDQLQP-PAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPG-- 271
Query: 63 FKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRG 101
V IEM ++ L +A+ GD +G V+G+ + ++ RG
Sbjct: 272 VVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRG 310
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 7/95 (7%)
Query: 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT 182
+D EE+ RGITI++ +++ T+ ++ D PGH D++KNMITG SQ D AILVV+A
Sbjct: 62 LDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSAR 121
Query: 183 DGAMP-------QTREHLLLAKQIGVTNIVVFINK 210
G QTREHLLLA+ +G+ I+V +NK
Sbjct: 122 KGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNK 156
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 3 LLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQ 62
L+ +D P P + +DKP +PV++ YSIPG GTV GR+E G+++ G + F G
Sbjct: 218 LVEALDQLQP-PAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPG-- 274
Query: 63 FKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRG 101
V IEM ++ L +A+ GD +G V+G+ + ++ RG
Sbjct: 275 VVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRG 313
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 13/127 (10%)
Query: 98 VNRGLIMAKPVL----ADKKLAK-VKQYADI-DNAPEEKARGITINVAHVEYATENRHYS 151
++RG I K V A KKL K +++A + D EE+ RG+TIN+ + + T+ ++
Sbjct: 28 MDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFT 87
Query: 152 HTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-------QTREHLLLAKQIGVTNI 204
D PGH D++KNMITG SQ D AILVV+A G QTREH++LAK +G+ +
Sbjct: 88 IIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQL 147
Query: 205 VVFINKF 211
+V +NK
Sbjct: 148 IVAVNKM 154
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 10/120 (8%)
Query: 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGR 61
E L+Q++ P + +DKP +P++ YSI G GTV GR+E G++K G + F G+
Sbjct: 217 EYLDQLEL----PPKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGK 272
Query: 62 QFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMA----KPVLADKKLAKV 117
V IE H +D+A+ GD +G V+G+++ ++ RG ++ P +AD+ A++
Sbjct: 273 V--GEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARI 330
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 7/96 (7%)
Query: 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT 182
+D E+ RGITI++A ++ T + D PGH D+IKNMITGTSQ D AIL++A
Sbjct: 60 LDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGG 119
Query: 183 DGAMP-------QTREHLLLAKQIGVTNIVVFINKF 211
G QTREH LLA +GV ++V +NK
Sbjct: 120 VGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKM 155
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 3 LLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQ 62
LL ID I QP R DKP LP++ Y I G GTV GR+E G++K GM F G
Sbjct: 226 LLEAIDA-IEQPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG-- 282
Query: 63 FKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRG 101
T V +EM H+ L++ GD +G VK + E+ RG
Sbjct: 283 VTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRG 321
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT 182
+D EE+ +G T+ V + TE +H++ D PGH ++ NMI G SQ D A+LV++A
Sbjct: 70 LDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISAR 129
Query: 183 DGAMP-------QTREHLLLAKQIGVTNIVVFINK 210
G QTREH +LAK GV +++V INK
Sbjct: 130 KGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINK 164
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 11 IPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGI 70
+P R +D P LP+ Y GTVV G+LE G + KG + + V GI
Sbjct: 234 LPNFNRSVDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQ--QLVMMPNKHNVEVLGI 289
Query: 71 EMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
D G+ L +KG++ +E+ G I+ P
Sbjct: 290 LSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDP 326
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT 182
+D+ EE+ +G T+ V + TE+R +S D PGH Y+ NMI G SQ D +LV++A
Sbjct: 96 LDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISAR 155
Query: 183 DGAMP-------QTREHLLLAKQIGVTNIVVFINKF 211
G QTREH +LA+ G+ ++VV INK
Sbjct: 156 RGEFEAGFERGGQTREHAVLARTQGINHLVVVINKM 191
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 16 RDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHK 75
R ++ PF +P+ Y GT++ G++E G +KK + + T E +
Sbjct: 268 RKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEE 325
Query: 76 ILDEAQAGDQLGALVKGMKRDEVNRGLIM 104
I + GDQ+ V+G D V G ++
Sbjct: 326 I-SSSICGDQVRLRVRGDDSD-VQTGYVL 352
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT 182
+D EE+ARG+T++VA + ++ + Y D PGH D+I MI G S D A+LVV ++
Sbjct: 230 LDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSS 289
Query: 183 DGAMP-------QTREHLLLAKQIGVTNIVVFINKF 211
QTREH L + +G++ IVV +NK
Sbjct: 290 QNNFERGFLENGQTREHAYLLRALGISEIVVSVNKL 325
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT 182
+D EE+ RG+T+++ ++T +++ D PGH D++ N I G SQ D AIL V +
Sbjct: 86 MDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCS 145
Query: 183 DGAMP-------QTREHLLLAKQIGVTNIVVFINK 210
A QT+EH+LLA +G+ N+++ +NK
Sbjct: 146 TNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 180
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT 182
+D EE+ RG+T+++ ++T +++ D PGH D++ N I G SQ D AIL V +
Sbjct: 220 MDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCS 279
Query: 183 DGAMP-------QTREHLLLAKQIGVTNIVVFINK 210
A QT+EH+LLA +G+ N+++ +NK
Sbjct: 280 TNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 314
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 124 DNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATD 183
D EE+ RG+T+++ ++T +++ D PGH D++ N I G SQ D AIL V +
Sbjct: 87 DQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCST 146
Query: 184 GAMP-------QTREHLLLAKQIGVTNIVVFINK 210
A QT+EH LLA +G+ N+++ NK
Sbjct: 147 NAFESGFDLDGQTKEHXLLASSLGIHNLIIAXNK 180
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%)
Query: 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT 182
+D E+ +GITI+VA+ ++T R + D PGH Y +N TG S D AI++V A
Sbjct: 79 VDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDAR 138
Query: 183 DGAMPQTREHLLLAKQIGVTNIVVFINK 210
G QTR H +A +G+ +IVV INK
Sbjct: 139 YGVQTQTRRHSYIASLLGIKHIVVAINK 166
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 112 KKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQ 171
K L ++ + D PE + RGITI++ + EN + D PGHAD I+ +++
Sbjct: 37 KVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96
Query: 172 MDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVF 207
+D A++VV A +G QT EH+L+ + IVV
Sbjct: 97 IDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVI 132
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 8/123 (6%)
Query: 2 ELLNQIDTYI--PQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGY 59
EL N I T + + +R+ + F +P++H + I G GTVVTG + +GIVK G E +
Sbjct: 178 ELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPI 237
Query: 60 GRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIM----AKPVLADKKLA 115
T V I+ F + + EA+AGD++G ++G+ ++ RG I+ K DK +A
Sbjct: 238 --NMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVA 295
Query: 116 KVK 118
K+K
Sbjct: 296 KIK 298
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 62.0 bits (149), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 124 DNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATD 183
DN E+ RGITI + EN + D PGH D++ + S +DGAIL+++A D
Sbjct: 43 DNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKD 102
Query: 184 GAMPQTREHLLLAKQIGVTNIVVFINK 210
G QTR +++G+ I FINK
Sbjct: 103 GVQAQTRILFHALRKMGIPTI-FFINK 128
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 52/112 (46%), Gaps = 24/112 (21%)
Query: 124 DNAPEEKARGITINVAHVE-----------YATEN------------RHYSHTDCPGHAD 160
D EE RGITI + + Y+T R S D PGH
Sbjct: 36 DTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEA 95
Query: 161 YIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQIGVTNIVVFINKF 211
+ M+ G S MDGAILV+AA + PQTREHL+ + IG NI++ NK
Sbjct: 96 LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKI 147
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 22/127 (17%)
Query: 3 LLNQIDTYIPQPVRDLDKPFYLPVEHTYSI--PGR------GTVVTGRLERGIVKKGMEC 54
L+ I+ +IP P RD +KP + V ++ + PG G V+ G + +G +K G E
Sbjct: 190 LVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEI 249
Query: 55 E------FTGYGR----QFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDE-VNRGLI 103
E + +GR T + ++ + ++EA G +G G K D + +G +
Sbjct: 250 EIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGV---GTKLDPYLTKGDL 306
Query: 104 MAKPVLA 110
MA V+
Sbjct: 307 MAGNVVG 313
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 52/112 (46%), Gaps = 24/112 (21%)
Query: 124 DNAPEEKARGITINVAHVE-----------YATEN------------RHYSHTDCPGHAD 160
D EE RGITI + + Y+T R S D PGH
Sbjct: 36 DTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEA 95
Query: 161 YIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQIGVTNIVVFINKF 211
+ M+ G S MDGAILV+AA + PQTREHL+ + IG NI++ NK
Sbjct: 96 LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKI 147
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 22/127 (17%)
Query: 3 LLNQIDTYIPQPVRDLDKPFYLPVEHTYSI--PGR------GTVVTGRLERGIVKKGMEC 54
L+ I+ +IP P RD +KP + V ++ + PG G V+ G + +G +K G E
Sbjct: 190 LVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEI 249
Query: 55 E------FTGYGR----QFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDE-VNRGLI 103
E + +GR T + ++ + ++EA G +G G K D + +G +
Sbjct: 250 EIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGV---GTKLDPYLTKGDL 306
Query: 104 MAKPVLA 110
MA V+
Sbjct: 307 MAGNVVG 313
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 52/112 (46%), Gaps = 24/112 (21%)
Query: 124 DNAPEEKARGITINVAHVE-----------YATEN------------RHYSHTDCPGHAD 160
D EE RGITI + + Y+T R S D PGH
Sbjct: 37 DTHSEELRRGITIKIGFADAEIRRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEA 96
Query: 161 YIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQIGVTNIVVFINKF 211
+ M+ G S MDGAILV+AA + PQTREHL+ + IG NI++ NK
Sbjct: 97 LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKI 148
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 22/127 (17%)
Query: 3 LLNQIDTYIPQPVRDLDKPFYLPVEHTYSI--PGR------GTVVTGRLERGIVKKGMEC 54
L+ I+ +IP P RD +KP + V ++ + PG G V+ G + +G +K G E
Sbjct: 191 LVKAIEEFIPTPKRDSNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEI 250
Query: 55 E------FTGYGR----QFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDE-VNRGLI 103
E + +GR T + ++ + ++EA G +G G K D + +G +
Sbjct: 251 EIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGI---GTKLDPYLTKGDL 307
Query: 104 MAKPVLA 110
MA V+
Sbjct: 308 MAGNVVG 314
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 52/112 (46%), Gaps = 29/112 (25%)
Query: 128 EEKARGITINVAHVE--------------YATEN--------------RHYSHTDCPGHA 159
EE RG+TI + + E Y TE R S D PGH
Sbjct: 39 EELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 98
Query: 160 DYIKNMITGTSQMDGAILVVAATDG-AMPQTREHLLLAKQIGVTNIVVFINK 210
+ M++G + MDGAILVVAA + PQTREH + IGV N+++ NK
Sbjct: 99 VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNK 150
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 52/112 (46%), Gaps = 29/112 (25%)
Query: 128 EEKARGITINVAHVE--------------YATEN--------------RHYSHTDCPGHA 159
EE RG+TI + + E Y TE R S D PGH
Sbjct: 38 EELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 97
Query: 160 DYIKNMITGTSQMDGAILVVAATDG-AMPQTREHLLLAKQIGVTNIVVFINK 210
+ M++G + MDGAILVVAA + PQTREH + IGV N+++ NK
Sbjct: 98 VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNK 149
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDG-AMPQTREHLLLAKQIGVTNIVV 206
R S D PGH + M++G + MDGAILVVAA + PQTREH + IGV N+++
Sbjct: 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLII 134
Query: 207 FINK 210
NK
Sbjct: 135 VQNK 138
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDG-AMPQTREHLLLAKQIGVTNIVV 206
R S D PGH + M++G + MDGAILVVAA + PQTREH + IGV N+++
Sbjct: 81 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLII 140
Query: 207 FINK 210
NK
Sbjct: 141 VQNK 144
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQIGVTNIVV 206
R S D PGH + M++G S MDGAILV+AA + PQT+EHL+ + +G+ I++
Sbjct: 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIII 140
Query: 207 FINKF 211
NK
Sbjct: 141 VQNKI 145
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 48/112 (42%), Gaps = 24/112 (21%)
Query: 124 DNAPEEKARGITINVAHVE-----------YATEN------------RHYSHTDCPGHAD 160
D EE RGITI + + Y+T R S D PGH
Sbjct: 36 DTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEA 95
Query: 161 YIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQIGVTNIVVFINKF 211
+ G S DGAILV+AA + PQTREHL + IG NI++ NK
Sbjct: 96 LXTTXLAGASLXDGAILVIAANEPCPRPQTREHLXALQIIGQKNIIIAQNKI 147
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 3 LLNQIDTYIPQPVRDLDKPFYLPVEHTYSI--PGR------GTVVTGRLERGIVKKGMEC 54
L+ I+ +IP P RD +KP V ++ + PG G V+ G + +G +K G E
Sbjct: 190 LVKAIEDFIPTPKRDPNKPPKXLVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEI 249
Query: 55 E------FTGYGR----QFKTTVTGIEMFHKILDEAQAGDQLGALVK---GMKRDEVNRG 101
E + +GR T + ++ + ++EA G +G K + + ++ G
Sbjct: 250 EIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLXAG 309
Query: 102 LIMAKP 107
++ KP
Sbjct: 310 NVVGKP 315
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 128 EEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP 187
E++A GIT ++ + ++ + D PGH + G D ILVVAA DG MP
Sbjct: 35 EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMP 94
Query: 188 QTREHLLLAKQIGVTNIVVFINKF 211
QT E + AK V I+V INK
Sbjct: 95 QTVEAINHAKAANVP-IIVAINKM 117
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 113 KLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQM 172
K K ++A D E+ RGI++ + +++ +R + D PGH D+ ++ + +
Sbjct: 65 KARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAV 124
Query: 173 DGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
D A++V+ A G QTR+ L+ ++ T ++ F+NK
Sbjct: 125 DSALVVIDAAKGVEAQTRK-LMDVCRMRATPVMTFVNK 161
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%)
Query: 130 KARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT 189
+A GIT ++ TEN + D PGHA + G D +LVVAA DG MPQT
Sbjct: 33 EAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQT 92
Query: 190 REHL 193
E +
Sbjct: 93 IEAI 96
>pdb|2P8W|S Chain S, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|2P8X|S Chain S, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Z|S Chain S, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
Length = 35
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVE 142
A+ +VK Y DID APEE+ARGITIN AHVE
Sbjct: 3 AENPNVEVKDYGDIDKAPEERARGITINTAHVE 35
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 113 KLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQM 172
K K ++A D EK RGI++ + ++ ++ + D PGHAD+ ++ + +
Sbjct: 47 KSRKAARHATSDWXELEKQRGISVTTSVXQFPYKDYLINLLDTPGHADFTEDTYRTLTAV 106
Query: 173 DGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
D A+ V+ A G P+T + L ++ T I FINK
Sbjct: 107 DSALXVIDAAKGVEPRTIK-LXEVCRLRHTPIXTFINK 143
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 113 KLAKVKQ-YADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQ 171
K+A+V + A +D +E+ RGITI A ++ + D PGH D+ +
Sbjct: 41 KIAEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRV 100
Query: 172 MDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
+DGAI+V ++ G PQ+ A++ V I F NK
Sbjct: 101 LDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKM 139
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 119 QYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILV 178
Q+A D EK RGI+I + +++ + + D PGH D+ ++ + +D ++V
Sbjct: 53 QHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMV 112
Query: 179 VAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
+ A G +TR+ L+ ++ T I+ F+NK
Sbjct: 113 IDAAKGVEDRTRK-LMEVTRLRDTPILTFMNKL 144
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 119 QYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILV 178
Q+A D EK RGI+I + +++ + + D PGH D+ ++ + +D ++V
Sbjct: 53 QHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMV 112
Query: 179 VAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
+ A G +TR+ L+ ++ T I+ F+NK
Sbjct: 113 IDAAKGVEDRTRK-LMEVTRLRDTPILTFMNKL 144
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVA 180
A +D +E+ RGITI A ++ + D PGH D+ + +DGAI+V
Sbjct: 50 ATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 181 ATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
++ G PQ+ A++ V I F NK
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRI-AFANKM 139
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVA 180
A +D +E+ RGITI A ++ + D PGH D+ + +DGAI+V
Sbjct: 50 ATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 181 ATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
++ G PQ+ A++ V I F NK
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRI-AFANKM 139
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 121 ADIDNAPEEKARGITINVAHVEYAT-------ENRHYSHTDCPGHADYIKNMITGTSQMD 173
A D +E+ RGITI A V +N + D PGH D+ + +D
Sbjct: 51 ATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLD 110
Query: 174 GAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
GA++V T G PQ+ A + GV I V++NK
Sbjct: 111 GAVVVFCGTSGVEPQSETVWRQANKYGVPRI-VYVNKM 147
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVA 180
A +D +E+ RGITI A ++ + D PGH D+ + +DGAI+V
Sbjct: 50 ATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 181 ATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
++ G PQ+ A++ V I F NK
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRI-AFANKM 139
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVA 180
A +D +E+ RGITI A ++ + D PGH D+ + +DGAI+V
Sbjct: 50 ATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 181 ATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
++ G PQ+ A++ V I F NK
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRI-AFANKM 139
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVA 180
A +D +E+ RGITI A ++ + D PGH D+ + +DGAI+V
Sbjct: 50 ATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 181 ATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
++ G PQ+ A++ V I F NK
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRI-AFANKM 139
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVA 180
A +D +E+ RGITI A ++ + D PGH D+ + +DGAI+V
Sbjct: 50 ATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 181 ATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
++ G PQ+ A++ V I F NK
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRI-AFANKM 139
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVA 180
A +D +E+ RGITI A ++ + D PGH D+ + +DGAI+V
Sbjct: 50 ATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 181 ATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
++ G PQ+ A++ V I F NK
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRI-AFANKM 139
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 154 DCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
D PGHA + GT D ILVVAA DG M QT E + AK V IV+ INK
Sbjct: 58 DTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINK 113
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVA 180
+ +D +E+ RGITI A A E + D PGH D+ + +DGA+ V+
Sbjct: 48 SQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLD 107
Query: 181 ATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
A G PQT A GV I VF+NK
Sbjct: 108 AQSGVEPQTETVWRQATTYGVPRI-VFVNKM 137
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVA 180
+ +D +E+ RGITI A A E + D PGH D+ + +DGA+ V+
Sbjct: 48 SQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLD 107
Query: 181 ATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
A G PQT A GV I VF+NK
Sbjct: 108 AQSGVEPQTETVWRQATTYGVPRI-VFVNKM 137
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 121 ADIDNAPEEKARGITINVAHVE--YATENRHYSH-----TDCPGHADYIKNMITGTSQMD 173
A +D +E+ RGITI A ++ + Y D PGH D+ + +D
Sbjct: 48 ATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLD 107
Query: 174 GAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
GA++V A G PQ+ A + V I F+NK
Sbjct: 108 GAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKM 144
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 121 ADIDNAPEEKARGITINVAHVE--YATENRHYSH-----TDCPGHADYIKNMITGTSQMD 173
A +D +E+ RGITI A ++ + Y D PGH D+ + +D
Sbjct: 47 ATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLD 106
Query: 174 GAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
GA++V A G PQ+ A + V I F+NK
Sbjct: 107 GAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKM 143
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVA 180
+ +D +E+ RGITI A A E + D PGH D + +DGA+ V+
Sbjct: 48 SQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLD 107
Query: 181 ATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
A G PQT A GV I VF+NK
Sbjct: 108 AQSGVEPQTETVWRQATTYGVPRI-VFVNKM 137
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVA 180
+ +D +E+ RGITI A A E + D PGH D + +DGA+ V+
Sbjct: 48 SQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLD 107
Query: 181 ATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
A G PQT A GV I VF+NK
Sbjct: 108 AQSGVEPQTETVWRQATTYGVPRI-VFVNKM 137
>pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor
Ef-Pyl From Methanosarcina Mazei
Length = 370
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 21 PFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEA 80
P + ++H +++ G+G VV G +++GI K + + R + + I+ +D A
Sbjct: 192 PARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIE--IRSIQSHDVDIDSA 249
Query: 81 QAGDQLGALVKGMKRDEVNRGLIMA 105
AG ++G +K ++ ++ RG I++
Sbjct: 250 PAGTRVGXRLKNVQAKDIERGFIIS 274
>pdb|3DWU|A Chain A, Transition-State Model Conformation Of The Switch I Region
Fitted Into The Cryo-Em Map Of The Eef2.80s.Alf4.Gdp
Complex
Length = 46
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 110 ADKKLAKVKQYADIDNAPEEKARGITIN 137
A+ +VK Y DID APEE+ARGITIN
Sbjct: 18 AENPNVEVKDYGDIDKAPEERARGITIN 45
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 123 IDNAPEEKARGITINVAHV--EYAT---ENRHYSHTDCPGHADYIKNMITGTSQMDGAIL 177
+D+ E+ RGITI V +Y E + D PGH D+ + + +GA+L
Sbjct: 41 LDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALL 100
Query: 178 VVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
VV A G QT + A ++ + +V +NK
Sbjct: 101 VVDAGQGVEAQTLANCYTAMEMDL-EVVPVLNKI 133
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 123 IDNAPEEKARGITINVAHV--EYAT---ENRHYSHTDCPGHADYIKNMITGTSQMDGAIL 177
+D+ E+ RGITI V +Y E + D PGH D+ + + +GA+L
Sbjct: 41 LDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALL 100
Query: 178 VVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
VV A G QT + A ++ + +V +NK
Sbjct: 101 VVDAGQGVEAQTLANCYTAMEMDL-EVVPVLNKI 133
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGR 61
E+L I IP P D KP + +Y P RG V R+ G VK G + G+
Sbjct: 173 EILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIXLXSTGK 232
Query: 62 QFKTTVTGIEMFHKI-LDEAQAGD 84
+++ T G + D+ AGD
Sbjct: 233 EYEVTEVGAQTPKXTKFDKLSAGD 256
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 123 IDNAPEEKARGITINVAHVE--YATE--NRHYSH-TDCPGHADYIKNMITGTSQMDGAIL 177
+D E+ RGIT+ V Y + N + H D PGH D+ + + +GA+L
Sbjct: 43 LDTLDVERERGITVKXQAVRXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALL 102
Query: 178 VVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
++ A+ G QT + A + + I+ INK
Sbjct: 103 LIDASQGIEAQTVANFWKAVEQDLV-IIPVINK 134
>pdb|3E1Y|E Chain E, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|F Chain F, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|G Chain G, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|H Chain H, Crystal Structure Of Human Erf1ERF3 COMPLEX
Length = 204
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 18 LDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKIL 77
L P LP+ Y GTVV G+LE G + KG + + V GI
Sbjct: 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQ--QLVMMPNKHNVEVLGILSDDVET 58
Query: 78 DEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
D G+ L +KG++ +E+ G I+ P
Sbjct: 59 DTVAPGENLKIRLKGIEEEEILPGFILCDP 88
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGR 61
E+L I IP P D KP + +Y P RG V R+ G VK G + G+
Sbjct: 173 EILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGK 232
Query: 62 QFKTTVTGIEMFHKI-LDEAQAGD 84
+++ T G + D+ AGD
Sbjct: 233 EYEVTEVGAQTPKMTKFDKLSAGD 256
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 123 IDNAPEEKARGITINVAHVEYATE----NRHYSH-TDCPGHADYIKNMITGTSQMDGAIL 177
+D E+ RGIT+ + V + N + H D PGH D+ + + +GA+L
Sbjct: 43 LDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALL 102
Query: 178 VVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
++ A+ G QT + A + + I+ INK
Sbjct: 103 LIDASQGIEAQTVANFWKAVEQDLV-IIPVINK 134
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 17/112 (15%)
Query: 115 AKVKQYADIDNAPEEKARGITI--------------NVAHVEYATENRHY--SHTDCPGH 158
AK + D +E+ RGITI +V ++ T+ + + D PGH
Sbjct: 49 AKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGH 108
Query: 159 ADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
D+ + DGA++VV +G QT L A + +VV INK
Sbjct: 109 VDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVV-INK 159
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 17/112 (15%)
Query: 115 AKVKQYADIDNAPEEKARGITI--------------NVAHVEYATENRHY--SHTDCPGH 158
AK + D +E+ RGITI +V ++ T+ + + D PGH
Sbjct: 49 AKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGH 108
Query: 159 ADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
D+ + DGA++VV +G QT L A + +VV INK
Sbjct: 109 VDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVV-INK 159
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 154 DCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
D PGH D+ + +DGAI+V ++ G PQ+ A++ V I F NK
Sbjct: 50 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKM 106
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 32.0 bits (71), Expect = 0.28, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 33/83 (39%)
Query: 124 DNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATD 183
D PE K T+ D PG+ D++ + D A++ V+A
Sbjct: 50 DYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEA 109
Query: 184 GAMPQTREHLLLAKQIGVTNIVV 206
G T +A+++G+ +VV
Sbjct: 110 GVQVGTERAWTVAERLGLPRMVV 132
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 154 DCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
D PGH + G + D AIL+V +G PQT+E L + + T VV NK
Sbjct: 76 DTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYR-TPFVVAANKI 132
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 154 DCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
D PGH + G + D AIL+V +G PQT+E L + + T VV NK
Sbjct: 76 DTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR-TPFVVAANKI 132
>pdb|4FE7|A Chain A, Structure Of Xylose-binding Transcription Activator Xylr
Length = 412
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 93 MKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSH 152
+K VNR P + K+ A ++YA EEK RG+ +E A EN ++
Sbjct: 134 LKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQ--GLETAPENWQHAQ 191
Query: 153 TDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHL 193
AD+++ + T G I V A + Q EHL
Sbjct: 192 NRL---ADWLQTLPPQT----GIIAVTDARARHILQVCEHL 225
>pdb|4FE4|A Chain A, Crystal Structure Of Apo E. Coli Xylr
pdb|4FE4|B Chain B, Crystal Structure Of Apo E. Coli Xylr
pdb|4FE4|C Chain C, Crystal Structure Of Apo E. Coli Xylr
Length = 392
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 93 MKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSH 152
+K VNR P + K+ A ++YA EEK RG+ +E A EN ++
Sbjct: 114 LKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQ--GLETAPENWQHAQ 171
Query: 153 TDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHL 193
AD+++ + T G I V A + Q EHL
Sbjct: 172 NRL---ADWLQTLPPQT----GIIAVTDARARHILQVCEHL 205
>pdb|1GGP|A Chain A, Crystal Structure Of Trichosanthes Kirilowii Lectin-1 And
Its Relation To The Type 2 Ribosome Inactivating
Proteins
Length = 234
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 94 KRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITI---NVAHVEYATENRHY 150
+RD + P L L + + YA +D+A ++ + + N+A V Y + Y
Sbjct: 13 ERDAAEGPMAHGIPALNAGALDEARAYATVDSANTDEEVSVAVDVTNLAVVAYRAGSNSY 72
Query: 151 SHTDCPGHADYIKNMITGTSQ 171
H PG + + ++ + +SQ
Sbjct: 73 FHAAAPGSS--LSHLFSRSSQ 91
>pdb|3RJL|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|D Chain D, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|E Chain E, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|F Chain F, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|G Chain G, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|H Chain H, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
Length = 538
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 73 FHKILDEAQAGDQLGALVKGMKRDEVNRGLI------------------MAKPVLADKKL 114
F+KI+D + G + G LV G K D+ I + PV+A K+
Sbjct: 369 FNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKV 428
Query: 115 AKVKQYADIDNAPEEKARG--ITINVAHVEYATENRH----YSHTDCPG 157
+ + ++ N E G IT N H+ A + H Y + +C G
Sbjct: 429 SSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTG 477
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|D Chain D, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|E Chain E, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|J Chain J, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 201
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 21 PFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEA 80
PF +P+ Y GT++ G++E G +KK + + T E +I +
Sbjct: 7 PFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEI-SSS 63
Query: 81 QAGDQLGALVKGMKRDEVNRGLIM 104
GDQ+ V+G D V G ++
Sbjct: 64 ICGDQVRLRVRGDDSD-VQTGYVL 86
>pdb|2GTT|A Chain A, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|B Chain B, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|C Chain C, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|D Chain D, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|E Chain E, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|F Chain F, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|G Chain G, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|H Chain H, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|I Chain I, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|J Chain J, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|K Chain K, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|L Chain L, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|M Chain M, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|N Chain N, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|O Chain O, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|P Chain P, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|Q Chain Q, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|R Chain R, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|S Chain S, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|T Chain T, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|U Chain U, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
pdb|2GTT|V Chain V, Crystal Structure Of The Rabies Virus Nucleoprotein-rna
Complex
Length = 450
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 22 FYLPVEHTYSIPGRGTVVTGRLE-RGIVKKGMECEFTGYGRQFKTTVTG--IEMFHKILD 78
F+ +EH YS GTVVT + G+V FTG+ +Q T + FHK +
Sbjct: 213 FFSRIEHLYSAIRVGTVVTAYEDCSGLVS------FTGFIKQINLTAREAILYFFHKNFE 266
Query: 79 E 79
E
Sbjct: 267 E 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,282,581
Number of Sequences: 62578
Number of extensions: 259682
Number of successful extensions: 689
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 132
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)