Query psy9646
Match_columns 211
No_of_seqs 252 out of 2093
Neff 9.2
Searched_HMMs 46136
Date Sat Aug 17 01:00:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0460|consensus 99.9 1.2E-26 2.7E-31 186.0 5.7 133 2-136 235-367 (449)
2 PLN00043 elongation factor 1-a 99.9 5.4E-24 1.2E-28 182.7 13.0 140 2-144 215-355 (447)
3 COG5256 TEF1 Translation elong 99.9 4.8E-24 1.1E-28 175.6 11.6 180 2-185 213-395 (428)
4 PRK12735 elongation factor Tu; 99.9 2.6E-23 5.7E-28 176.6 13.3 143 2-145 193-340 (396)
5 PRK00049 elongation factor Tu; 99.9 4.3E-23 9.4E-28 175.2 13.8 143 2-145 193-340 (396)
6 COG0050 TufB GTPases - transla 99.9 3.2E-24 7E-29 169.3 5.4 134 1-136 190-323 (394)
7 PRK12317 elongation factor 1-a 99.9 3.9E-23 8.6E-28 177.2 12.4 141 2-145 207-347 (425)
8 PLN03126 Elongation factor Tu; 99.9 6.3E-23 1.4E-27 177.0 13.5 152 2-155 270-426 (478)
9 PLN03127 Elongation factor Tu; 99.9 8.7E-23 1.9E-27 175.1 13.8 142 2-144 242-390 (447)
10 TIGR00483 EF-1_alpha translati 99.9 4.4E-23 9.4E-28 177.0 11.9 141 2-145 209-349 (426)
11 PRK12736 elongation factor Tu; 99.9 9E-23 1.9E-27 173.2 13.5 143 2-145 191-338 (394)
12 PTZ00141 elongation factor 1- 99.9 1.2E-22 2.5E-27 174.6 13.0 141 2-145 215-356 (446)
13 cd03693 EF1_alpha_II EF1_alpha 99.9 8.6E-23 1.9E-27 138.6 9.5 88 19-108 2-89 (91)
14 TIGR00485 EF-Tu translation el 99.9 3.2E-22 7E-27 169.9 14.7 151 2-154 191-346 (394)
15 CHL00071 tufA elongation facto 99.9 3.4E-22 7.4E-27 170.4 12.9 150 2-153 201-355 (409)
16 cd03698 eRF3_II_like eRF3_II_l 99.9 6.3E-22 1.4E-26 132.2 10.0 83 21-106 1-83 (83)
17 COG5256 TEF1 Translation elong 99.9 4.1E-22 8.9E-27 164.3 9.1 105 107-211 44-155 (428)
18 COG5258 GTPBP1 GTPase [General 99.9 2.3E-21 4.9E-26 158.1 12.7 143 1-144 327-472 (527)
19 cd04089 eRF3_II eRF3_II: domai 99.9 3.8E-21 8.3E-26 128.0 10.1 82 21-106 1-82 (82)
20 cd03694 GTPBP_II Domain II of 99.9 3.3E-21 7.2E-26 129.7 9.3 85 22-106 1-87 (87)
21 PTZ00327 eukaryotic translatio 99.8 1.9E-20 4.1E-25 160.7 14.0 154 2-156 223-412 (460)
22 cd03697 EFTU_II EFTU_II: Elong 99.8 3.7E-21 8.1E-26 129.5 7.1 86 22-107 1-86 (87)
23 PRK04000 translation initiatio 99.8 2.2E-20 4.7E-25 159.3 12.8 152 2-154 191-372 (411)
24 cd03696 selB_II selB_II: this 99.8 2.9E-20 6.4E-25 124.1 9.0 82 22-105 1-82 (83)
25 TIGR03680 eif2g_arch translati 99.8 6.2E-20 1.3E-24 156.4 13.1 144 2-145 186-359 (406)
26 COG0050 TufB GTPases - transla 99.8 2.3E-20 5.1E-25 147.6 7.4 97 115-211 42-138 (394)
27 cd03695 CysN_NodQ_II CysN_NodQ 99.8 1.4E-19 3.1E-24 120.0 9.3 81 22-106 1-81 (81)
28 COG3276 SelB Selenocysteine-sp 99.8 1.7E-19 3.7E-24 149.9 11.0 106 3-110 153-258 (447)
29 KOG0460|consensus 99.8 7.8E-20 1.7E-24 147.1 8.1 100 112-211 81-180 (449)
30 PRK10512 selenocysteinyl-tRNA- 99.8 5.4E-19 1.2E-23 156.9 12.3 136 2-144 156-292 (614)
31 PRK05124 cysN sulfate adenylyl 99.8 7.3E-19 1.6E-23 152.2 12.1 138 2-145 227-364 (474)
32 TIGR02034 CysN sulfate adenyly 99.8 7.5E-19 1.6E-23 149.7 11.8 139 2-146 199-337 (406)
33 COG2895 CysN GTPases - Sulfate 99.8 5.1E-19 1.1E-23 143.1 9.5 136 2-142 205-341 (431)
34 PTZ00141 elongation factor 1- 99.8 4.5E-19 9.7E-24 152.5 9.5 99 113-211 50-155 (446)
35 cd01884 EF_Tu EF-Tu subfamily. 99.8 9E-19 1.9E-23 135.2 9.1 91 121-211 38-128 (195)
36 KOG0459|consensus 99.8 6.9E-19 1.5E-23 144.4 7.8 149 2-155 289-439 (501)
37 TIGR02034 CysN sulfate adenyly 99.8 1.1E-18 2.4E-23 148.7 9.0 96 116-211 48-143 (406)
38 COG2895 CysN GTPases - Sulfate 99.8 7E-19 1.5E-23 142.3 7.3 95 117-211 55-149 (431)
39 PRK05506 bifunctional sulfate 99.8 7.7E-18 1.7E-22 150.9 12.8 137 2-144 223-359 (632)
40 PLN00043 elongation factor 1-a 99.8 2.4E-18 5.1E-23 148.0 9.0 97 115-211 52-155 (447)
41 TIGR00475 selB selenocysteine- 99.7 1E-17 2.2E-22 148.3 11.6 88 18-107 173-260 (581)
42 PLN03127 Elongation factor Tu; 99.7 6.6E-18 1.4E-22 145.1 9.7 90 122-211 98-187 (447)
43 KOG0458|consensus 99.7 7.5E-18 1.6E-22 143.8 9.1 101 111-211 218-325 (603)
44 PRK05124 cysN sulfate adenylyl 99.7 8.3E-18 1.8E-22 145.7 9.0 96 116-211 75-170 (474)
45 PF00009 GTP_EFTU: Elongation 99.7 6.8E-18 1.5E-22 129.6 7.4 89 122-211 42-132 (188)
46 KOG0458|consensus 99.7 1.2E-17 2.6E-22 142.6 9.2 143 2-147 387-530 (603)
47 PRK12736 elongation factor Tu; 99.7 1.6E-17 3.4E-22 141.2 9.4 91 121-211 48-138 (394)
48 COG0480 FusA Translation elong 99.7 1.9E-17 4E-22 147.7 9.2 89 122-211 49-138 (697)
49 TIGR00485 EF-Tu translation el 99.7 2.9E-17 6.3E-22 139.6 9.3 95 117-211 44-138 (394)
50 CHL00071 tufA elongation facto 99.7 3.4E-17 7.4E-22 139.8 9.4 90 122-211 49-138 (409)
51 PRK00049 elongation factor Tu; 99.7 4.1E-17 8.9E-22 138.7 9.7 90 122-211 49-138 (396)
52 PLN03126 Elongation factor Tu; 99.7 4.1E-17 8.9E-22 141.0 9.8 90 122-211 118-207 (478)
53 PRK12735 elongation factor Tu; 99.7 4.2E-17 9.2E-22 138.7 9.5 91 121-211 48-138 (396)
54 COG1217 TypA Predicted membran 99.7 3.3E-17 7.1E-22 136.8 8.3 91 120-211 40-130 (603)
55 cd01885 EF2 EF2 (for archaea a 99.7 7.7E-17 1.7E-21 126.6 8.6 90 121-211 36-135 (222)
56 COG4108 PrfC Peptide chain rel 99.7 4.2E-17 9.2E-22 135.3 7.4 87 124-211 57-143 (528)
57 cd01886 EF-G Elongation factor 99.7 9.7E-17 2.1E-21 129.7 9.2 90 121-211 37-126 (270)
58 KOG0463|consensus 99.7 1E-16 2.2E-21 131.0 7.6 157 1-157 346-522 (641)
59 PRK05506 bifunctional sulfate 99.7 1.6E-16 3.5E-21 142.4 8.4 97 115-211 71-167 (632)
60 KOG0462|consensus 99.7 1.4E-16 3E-21 135.2 7.3 89 122-211 96-187 (650)
61 cd04166 CysN_ATPS CysN_ATPS su 99.7 3.3E-16 7.2E-21 122.2 8.7 96 116-211 45-140 (208)
62 PTZ00327 eukaryotic translatio 99.7 1.1E-16 2.4E-21 137.6 6.4 105 107-211 40-181 (460)
63 PRK12317 elongation factor 1-a 99.7 3.1E-16 6.7E-21 134.7 9.1 99 113-211 49-149 (425)
64 KOG0461|consensus 99.6 1.4E-16 3.1E-21 128.8 5.6 153 2-159 183-337 (522)
65 cd01883 EF1_alpha Eukaryotic e 99.6 5.9E-16 1.3E-20 121.7 8.9 96 116-211 45-147 (219)
66 PRK10512 selenocysteinyl-tRNA- 99.6 5.1E-16 1.1E-20 138.1 9.3 104 108-211 7-114 (614)
67 COG3276 SelB Selenocysteine-sp 99.6 7.8E-16 1.7E-20 128.2 8.8 90 122-211 24-113 (447)
68 COG0532 InfB Translation initi 99.6 8.6E-16 1.9E-20 130.8 9.2 111 100-211 4-117 (509)
69 TIGR01394 TypA_BipA GTP-bindin 99.6 9E-16 1.9E-20 135.9 9.4 90 121-211 37-126 (594)
70 cd03688 eIF2_gamma_II eIF2_gam 99.6 4E-15 8.8E-20 102.0 10.4 91 17-107 1-112 (113)
71 PRK00007 elongation factor G; 99.6 1.3E-15 2.9E-20 137.7 9.1 90 121-211 48-137 (693)
72 PRK12739 elongation factor G; 99.6 1.9E-15 4E-20 136.8 8.6 90 121-211 46-135 (691)
73 TIGR00483 EF-1_alpha translati 99.6 3.4E-15 7.4E-20 128.3 9.6 100 112-211 49-151 (426)
74 cd04168 TetM_like Tet(M)-like 99.6 5.6E-15 1.2E-19 117.4 9.4 89 122-211 38-126 (237)
75 PLN00116 translation elongatio 99.6 3E-15 6.5E-20 137.8 8.9 90 121-211 55-160 (843)
76 PTZ00416 elongation factor 2; 99.6 3.1E-15 6.8E-20 137.4 9.0 90 121-211 55-154 (836)
77 TIGR00475 selB selenocysteine- 99.6 5.6E-15 1.2E-19 131.0 9.5 102 110-211 9-113 (581)
78 PRK07560 elongation factor EF- 99.6 5E-15 1.1E-19 134.7 8.0 90 121-211 56-149 (731)
79 KOG1145|consensus 99.6 9.6E-15 2.1E-19 124.2 8.3 111 100-211 152-263 (683)
80 cd04169 RF3 RF3 subfamily. Pe 99.6 1.9E-14 4.1E-19 116.2 9.2 89 122-211 45-133 (267)
81 KOG0459|consensus 99.5 6.6E-15 1.4E-19 121.2 6.2 104 108-211 117-227 (501)
82 cd04165 GTPBP1_like GTPBP1-lik 99.5 1.7E-14 3.6E-19 113.7 7.8 68 143-211 79-148 (224)
83 KOG0465|consensus 99.5 8.3E-15 1.8E-19 125.8 6.4 89 122-211 78-166 (721)
84 PRK00741 prfC peptide chain re 99.5 2.8E-14 6E-19 124.9 9.3 89 122-211 53-141 (526)
85 COG5257 GCD11 Translation init 99.5 1.4E-14 3.1E-19 116.2 6.7 93 119-211 31-150 (415)
86 TIGR00503 prfC peptide chain r 99.5 3.5E-14 7.6E-19 124.4 9.5 89 122-211 54-142 (527)
87 PRK10218 GTP-binding protein; 99.5 7.3E-14 1.6E-18 123.9 10.1 90 121-211 41-130 (607)
88 TIGR00484 EF-G translation elo 99.5 5.6E-14 1.2E-18 127.2 9.2 90 121-211 48-137 (689)
89 COG0481 LepA Membrane GTPase L 99.5 2.4E-14 5.1E-19 120.2 6.0 89 122-211 45-138 (603)
90 PRK05306 infB translation init 99.5 6.6E-14 1.4E-18 126.9 9.2 113 98-211 287-399 (787)
91 KOG0467|consensus 99.5 4.2E-14 9.1E-19 124.0 7.3 90 121-211 45-134 (887)
92 TIGR03680 eif2g_arch translati 99.5 8.6E-14 1.9E-18 118.8 9.0 90 122-211 28-144 (406)
93 cd01888 eIF2_gamma eIF2-gamma 99.5 1.3E-13 2.8E-18 107.2 8.9 89 123-211 25-147 (203)
94 KOG0468|consensus 99.5 7.9E-14 1.7E-18 120.9 8.2 93 118-211 162-259 (971)
95 TIGR01394 TypA_BipA GTP-bindin 99.5 3.8E-13 8.3E-18 119.3 12.5 104 2-109 181-289 (594)
96 TIGR00487 IF-2 translation ini 99.5 2.9E-13 6.3E-18 119.8 9.5 111 100-211 86-197 (587)
97 PRK05433 GTP-binding protein L 99.4 2.3E-13 4.9E-18 121.1 8.5 90 121-211 42-136 (600)
98 COG1217 TypA Predicted membran 99.4 6E-13 1.3E-17 111.6 10.4 105 2-110 185-294 (603)
99 cd03692 mtIF2_IVc mtIF2_IVc: t 99.4 1.1E-12 2.5E-17 87.4 9.6 79 24-104 3-82 (84)
100 PRK10218 GTP-binding protein; 99.4 8.7E-13 1.9E-17 117.0 11.3 103 2-108 185-292 (607)
101 TIGR00490 aEF-2 translation el 99.4 2.6E-13 5.6E-18 123.3 7.8 90 121-211 55-148 (720)
102 PRK04000 translation initiatio 99.4 3.4E-13 7.5E-18 115.2 8.1 90 122-211 33-149 (411)
103 COG1159 Era GTPase [General fu 99.4 6.8E-13 1.5E-17 106.1 8.5 101 110-211 15-124 (298)
104 cd04167 Snu114p Snu114p subfam 99.4 7.7E-13 1.7E-17 103.5 8.4 92 119-211 37-133 (213)
105 TIGR01393 lepA GTP-binding pro 99.4 2.2E-12 4.9E-17 114.6 12.1 104 2-108 170-277 (595)
106 cd04171 SelB SelB subfamily. 99.4 1.3E-12 2.9E-17 97.2 8.9 101 111-211 10-114 (164)
107 cd01889 SelB_euk SelB subfamil 99.4 9.3E-13 2E-17 101.3 8.0 88 123-211 29-130 (192)
108 TIGR01393 lepA GTP-binding pro 99.4 1E-12 2.2E-17 116.8 9.0 89 122-211 39-132 (595)
109 KOG0464|consensus 99.4 7.1E-14 1.5E-18 115.8 1.5 88 123-211 77-164 (753)
110 cd04170 EF-G_bact Elongation f 99.4 1.3E-12 2.7E-17 105.8 8.4 88 123-211 39-126 (268)
111 KOG1143|consensus 99.4 9.3E-13 2E-17 107.9 7.2 144 1-144 376-527 (591)
112 CHL00189 infB translation init 99.4 9.8E-13 2.1E-17 118.5 7.5 111 100-211 243-357 (742)
113 PRK05433 GTP-binding protein L 99.3 9.2E-12 2E-16 110.8 11.6 105 2-109 174-282 (600)
114 PRK12740 elongation factor G; 99.3 3.5E-12 7.6E-17 115.4 8.9 90 121-211 33-122 (668)
115 PRK13351 elongation factor G; 99.3 4.4E-12 9.5E-17 115.1 8.6 89 122-211 47-135 (687)
116 cd01891 TypA_BipA TypA (tyrosi 99.3 8.5E-12 1.8E-16 96.1 8.6 88 123-211 40-127 (194)
117 KOG0469|consensus 99.3 4.7E-12 1E-16 107.2 7.2 91 120-211 54-160 (842)
118 cd01890 LepA LepA subfamily. 99.3 2.1E-11 4.5E-16 92.4 9.0 88 123-211 37-129 (179)
119 KOG0461|consensus 99.3 1.3E-11 2.9E-16 100.3 8.2 94 117-211 30-132 (522)
120 KOG0052|consensus 99.2 8E-12 1.7E-16 103.2 5.3 106 106-211 40-152 (391)
121 cd01342 Translation_Factor_II_ 99.2 1.7E-10 3.6E-15 75.7 9.5 82 22-105 1-82 (83)
122 TIGR00491 aIF-2 translation in 99.2 4.9E-11 1.1E-15 105.7 8.0 107 104-211 7-131 (590)
123 PRK04004 translation initiatio 99.2 6.5E-11 1.4E-15 105.1 8.4 61 150-211 73-133 (586)
124 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 1.3E-10 2.9E-15 86.8 8.5 99 112-211 11-112 (168)
125 COG1160 Predicted GTPases [Gen 99.2 6.5E-11 1.4E-15 99.7 7.3 80 131-211 34-122 (444)
126 PF03144 GTP_EFTU_D2: Elongati 99.2 1.3E-10 2.8E-15 75.6 7.2 70 36-105 1-74 (74)
127 KOG1144|consensus 99.2 4.6E-11 1E-15 105.0 6.1 113 98-211 472-602 (1064)
128 PRK14845 translation initiatio 99.1 1.3E-10 2.8E-15 108.0 9.0 96 115-211 475-588 (1049)
129 COG5257 GCD11 Translation init 99.1 2.8E-10 6.2E-15 91.8 9.5 117 2-118 192-329 (415)
130 cd00881 GTP_translation_factor 99.1 3.8E-10 8.2E-15 85.8 9.0 87 124-211 38-124 (189)
131 KOG0462|consensus 99.1 2.1E-10 4.5E-15 98.2 6.9 106 2-108 225-332 (650)
132 PF14578 GTP_EFTU_D4: Elongati 99.1 2.9E-09 6.3E-14 69.5 9.9 77 20-104 3-79 (81)
133 cd01894 EngA1 EngA1 subfamily. 99.1 9.9E-10 2.1E-14 80.9 8.5 80 131-211 28-115 (157)
134 PRK15494 era GTPase Era; Provi 99.0 1.9E-09 4.1E-14 90.1 8.5 102 109-211 60-170 (339)
135 COG0481 LepA Membrane GTPase L 99.0 4.4E-09 9.6E-14 89.0 10.3 102 2-106 176-281 (603)
136 TIGR03594 GTPase_EngA ribosome 99.0 1.9E-09 4.2E-14 92.8 8.0 80 131-211 30-117 (429)
137 TIGR00436 era GTP-binding prot 98.9 3.4E-09 7.3E-14 85.9 8.2 76 134-211 34-117 (270)
138 COG5258 GTPBP1 GTPase [General 98.9 4.3E-09 9.3E-14 86.9 8.2 91 120-211 150-265 (527)
139 PRK00093 GTP-binding protein D 98.9 5.7E-09 1.2E-13 90.1 9.1 102 109-211 181-294 (435)
140 COG2229 Predicted GTPase [Gene 98.9 9.2E-09 2E-13 76.9 8.6 80 131-211 50-131 (187)
141 cd01879 FeoB Ferrous iron tran 98.9 4.9E-09 1.1E-13 77.4 7.1 97 112-211 7-111 (158)
142 PRK00093 GTP-binding protein D 98.9 7.1E-09 1.5E-13 89.5 8.3 79 132-211 33-119 (435)
143 PRK00089 era GTPase Era; Revie 98.9 1E-08 2.2E-13 84.0 8.5 68 143-211 48-123 (292)
144 TIGR03594 GTPase_EngA ribosome 98.9 7.5E-09 1.6E-13 89.2 7.8 101 110-211 181-293 (429)
145 PF01926 MMR_HSR1: 50S ribosom 98.9 6.6E-09 1.4E-13 73.3 6.0 98 111-210 9-116 (116)
146 PF02421 FeoB_N: Ferrous iron 98.9 6.8E-09 1.5E-13 77.0 6.3 99 110-211 9-115 (156)
147 cd03690 Tet_II Tet_II: This su 98.8 2.6E-08 5.7E-13 66.5 8.6 80 19-105 1-84 (85)
148 PRK03003 GTP-binding protein D 98.8 1.4E-08 2.9E-13 88.7 8.9 103 108-211 45-156 (472)
149 KOG0466|consensus 98.8 2.9E-09 6.4E-14 85.5 4.3 90 122-211 62-189 (466)
150 PRK12298 obgE GTPase CgtA; Rev 98.8 3.1E-08 6.8E-13 84.1 10.3 164 41-211 102-285 (390)
151 PRK09518 bifunctional cytidyla 98.8 2.3E-08 4.9E-13 91.3 9.4 102 109-211 283-393 (712)
152 cd01895 EngA2 EngA2 subfamily. 98.8 3.3E-08 7.1E-13 73.8 8.1 79 132-211 34-123 (174)
153 TIGR00487 IF-2 translation ini 98.8 2.1E-07 4.6E-12 82.8 14.1 97 2-106 240-340 (587)
154 PRK09866 hypothetical protein; 98.8 1.9E-08 4.1E-13 88.7 7.2 64 147-211 229-299 (741)
155 cd03691 BipA_TypA_II BipA_TypA 98.8 1.1E-07 2.5E-12 63.5 9.5 80 22-105 1-85 (86)
156 TIGR00490 aEF-2 translation el 98.7 7.5E-08 1.6E-12 88.0 10.7 101 2-108 245-374 (720)
157 cd04092 mtEFG2_II_like mtEFG2_ 98.7 8.2E-08 1.8E-12 63.8 8.0 77 23-105 2-82 (83)
158 PRK07560 elongation factor EF- 98.7 6.9E-08 1.5E-12 88.4 9.7 100 2-107 246-374 (731)
159 COG1160 Predicted GTPases [Gen 98.7 4.9E-08 1.1E-12 82.6 7.9 101 110-211 187-299 (444)
160 cd04088 EFG_mtEFG_II EFG_mtEFG 98.7 1.5E-07 3.2E-12 62.5 8.2 77 23-105 2-82 (83)
161 cd03699 lepA_II lepA_II: This 98.7 1.9E-07 4.2E-12 62.4 8.7 81 22-105 1-85 (86)
162 cd04164 trmE TrmE (MnmE, ThdF, 98.7 9.8E-08 2.1E-12 70.1 7.6 77 132-211 33-117 (157)
163 PRK12740 elongation factor G; 98.6 1.7E-07 3.7E-12 85.2 10.0 100 2-107 252-372 (668)
164 cd01882 BMS1 Bms1. Bms1 is an 98.6 1.1E-07 2.3E-12 75.2 7.5 64 145-211 80-143 (225)
165 PRK03003 GTP-binding protein D 98.6 9.8E-08 2.1E-12 83.3 7.9 102 109-211 219-332 (472)
166 PRK13351 elongation factor G; 98.6 2.9E-07 6.2E-12 83.9 11.2 100 2-107 268-389 (687)
167 KOG1143|consensus 98.6 6.5E-08 1.4E-12 79.9 5.9 93 118-211 198-313 (591)
168 cd01864 Rab19 Rab19 subfamily. 98.6 1.9E-07 4.1E-12 69.7 7.5 100 111-211 13-118 (165)
169 TIGR03598 GTPase_YsxC ribosome 98.6 2.5E-07 5.5E-12 70.2 8.3 63 148-211 64-139 (179)
170 cd04160 Arfrp1 Arfrp1 subfamil 98.6 1.3E-07 2.7E-12 70.6 6.1 76 135-211 37-117 (167)
171 PRK12299 obgE GTPase CgtA; Rev 98.6 6.9E-07 1.5E-11 74.5 10.9 164 41-211 101-281 (335)
172 TIGR00450 mnmE_trmE_thdF tRNA 98.6 3.5E-07 7.6E-12 79.0 9.4 102 108-211 210-320 (442)
173 PRK09518 bifunctional cytidyla 98.5 2.5E-07 5.3E-12 84.6 8.0 102 109-211 458-571 (712)
174 TIGR00231 small_GTP small GTP- 98.5 1.3E-07 2.9E-12 68.9 5.0 99 111-211 11-118 (161)
175 cd01881 Obg_like The Obg-like 98.5 2.7E-07 5.8E-12 69.3 6.7 79 132-211 27-130 (176)
176 PRK05306 infB translation init 98.5 2.3E-06 5.1E-11 78.4 13.8 176 2-185 442-626 (787)
177 TIGR02729 Obg_CgtA Obg family 98.5 8.3E-07 1.8E-11 73.9 10.1 164 41-211 100-283 (329)
178 cd03689 RF3_II RF3_II: this su 98.5 7.8E-07 1.7E-11 59.3 8.0 69 32-106 12-84 (85)
179 cd01897 NOG NOG1 is a nucleola 98.5 4.3E-07 9.2E-12 67.8 7.6 78 133-211 32-123 (168)
180 PRK12297 obgE GTPase CgtA; Rev 98.5 1.1E-06 2.3E-11 75.4 10.8 165 40-211 100-284 (424)
181 cd01898 Obg Obg subfamily. Th 98.5 2.7E-07 5.8E-12 69.0 6.3 76 135-211 34-124 (170)
182 TIGR00437 feoB ferrous iron tr 98.5 5.9E-07 1.3E-11 80.3 9.2 81 128-211 21-109 (591)
183 PRK05291 trmE tRNA modificatio 98.5 3.2E-07 7E-12 79.5 7.4 100 109-211 223-331 (449)
184 cd01861 Rab6 Rab6 subfamily. 98.5 5.4E-07 1.2E-11 66.7 7.7 100 111-211 10-115 (161)
185 cd00880 Era_like Era (E. coli 98.5 8.9E-07 1.9E-11 64.5 8.4 78 133-211 29-114 (163)
186 cd04124 RabL2 RabL2 subfamily. 98.5 8E-07 1.7E-11 66.2 8.1 64 147-211 48-114 (161)
187 smart00175 RAB Rab subfamily o 98.5 8.2E-07 1.8E-11 65.8 7.8 100 111-211 10-115 (164)
188 cd04091 mtEFG1_II_like mtEFG1_ 98.5 1.6E-06 3.5E-11 57.2 8.3 64 35-105 13-80 (81)
189 PRK09554 feoB ferrous iron tra 98.4 8.1E-07 1.8E-11 81.5 8.6 99 110-211 12-122 (772)
190 cd00154 Rab Rab family. Rab G 98.4 1.3E-06 2.7E-11 63.9 7.8 99 112-211 11-115 (159)
191 COG0486 ThdF Predicted GTPase 98.4 1E-06 2.2E-11 74.9 7.5 109 101-211 217-334 (454)
192 PRK00741 prfC peptide chain re 98.4 2.9E-06 6.3E-11 74.9 10.6 101 2-108 264-380 (526)
193 cd04151 Arl1 Arl1 subfamily. 98.4 9.5E-07 2.1E-11 65.4 6.6 69 142-211 37-110 (158)
194 PRK00007 elongation factor G; 98.4 2.5E-06 5.5E-11 77.8 10.3 100 2-107 270-393 (693)
195 KOG0463|consensus 98.4 4.4E-07 9.5E-12 75.2 4.8 63 148-211 219-283 (641)
196 COG0218 Predicted GTPase [Gene 98.4 1.9E-06 4.2E-11 65.8 7.9 96 112-211 35-145 (200)
197 cd04163 Era Era subfamily. Er 98.4 2.7E-06 5.8E-11 62.7 8.7 68 143-211 46-121 (168)
198 KOG1423|consensus 98.4 1.1E-06 2.5E-11 70.9 6.9 103 108-211 79-195 (379)
199 cd00878 Arf_Arl Arf (ADP-ribos 98.4 7.1E-07 1.5E-11 66.0 5.4 71 140-211 35-110 (158)
200 cd01893 Miro1 Miro1 subfamily. 98.4 1.3E-06 2.8E-11 65.3 6.8 66 145-211 44-113 (166)
201 cd01878 HflX HflX subfamily. 98.4 1.4E-06 3.1E-11 67.4 7.2 102 109-211 49-163 (204)
202 cd04113 Rab4 Rab4 subfamily. 98.4 1.3E-06 2.8E-11 64.7 6.8 63 148-211 49-115 (161)
203 TIGR00484 EF-G translation elo 98.4 3.3E-06 7.1E-11 77.0 10.6 100 2-107 269-391 (689)
204 PRK12739 elongation factor G; 98.4 2.9E-06 6.4E-11 77.4 10.2 100 2-107 268-390 (691)
205 cd01860 Rab5_related Rab5-rela 98.4 1.4E-06 3.1E-11 64.6 6.8 69 142-211 44-116 (163)
206 cd04157 Arl6 Arl6 subfamily. 98.3 2E-06 4.4E-11 63.6 7.4 68 143-211 40-114 (162)
207 PRK12296 obgE GTPase CgtA; Rev 98.3 3.9E-06 8.5E-11 73.1 10.1 138 40-183 101-248 (500)
208 TIGR00503 prfC peptide chain r 98.3 3.8E-06 8.2E-11 74.2 10.1 100 2-107 265-380 (527)
209 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.3 1.6E-06 3.5E-11 65.4 6.6 72 139-211 50-126 (174)
210 PRK04004 translation initiatio 98.3 3.9E-06 8.4E-11 75.0 10.0 89 15-105 226-326 (586)
211 cd04105 SR_beta Signal recogni 98.3 2.5E-06 5.5E-11 66.2 7.5 65 146-211 46-119 (203)
212 cd04145 M_R_Ras_like M-Ras/R-R 98.3 1.3E-06 2.9E-11 64.7 5.7 63 148-211 50-117 (164)
213 PRK04213 GTP-binding protein; 98.3 3E-06 6.5E-11 65.3 7.7 95 112-211 20-140 (201)
214 cd04114 Rab30 Rab30 subfamily. 98.3 2.8E-06 6.1E-11 63.4 7.1 73 138-211 44-122 (169)
215 cd01866 Rab2 Rab2 subfamily. 98.3 3.7E-06 7.9E-11 63.0 7.7 63 148-211 53-119 (168)
216 cd04106 Rab23_lke Rab23-like s 98.3 3.7E-06 8.1E-11 62.2 7.6 64 147-211 50-116 (162)
217 cd04161 Arl2l1_Arl13_like Arl2 98.3 2.9E-06 6.3E-11 63.6 7.0 69 142-211 37-110 (167)
218 cd04115 Rab33B_Rab33A Rab33B/R 98.3 5.5E-06 1.2E-10 62.1 8.2 100 111-211 12-119 (170)
219 cd04147 Ras_dva Ras-dva subfam 98.3 1.7E-06 3.7E-11 66.8 5.5 63 148-211 47-114 (198)
220 cd01862 Rab7 Rab7 subfamily. 98.3 4.8E-06 1E-10 62.2 7.9 63 148-211 49-119 (172)
221 TIGR03156 GTP_HflX GTP-binding 98.3 2.3E-06 5E-11 71.9 6.6 78 133-211 221-311 (351)
222 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.3 5.2E-06 1.1E-10 61.8 7.9 64 147-211 50-117 (166)
223 cd04154 Arl2 Arl2 subfamily. 98.2 3.5E-06 7.6E-11 63.4 6.6 68 143-211 53-125 (173)
224 PRK11058 GTPase HflX; Provisio 98.2 3.4E-06 7.3E-11 72.6 7.1 103 108-211 204-319 (426)
225 smart00178 SAR Sar1p-like memb 98.2 3.7E-06 8.1E-11 64.1 6.6 69 142-211 55-128 (184)
226 PRK00454 engB GTP-binding prot 98.2 1E-05 2.2E-10 61.9 8.8 64 147-211 69-145 (196)
227 TIGR00491 aIF-2 translation in 98.2 8.6E-06 1.9E-10 72.7 9.3 59 16-74 225-283 (590)
228 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.2 4.4E-06 9.6E-11 63.6 6.5 65 146-211 50-119 (183)
229 cd01863 Rab18 Rab18 subfamily. 98.2 4E-06 8.6E-11 62.1 6.1 64 147-211 48-116 (161)
230 cd04158 ARD1 ARD1 subfamily. 98.2 5.2E-06 1.1E-10 62.3 6.4 70 141-211 36-110 (169)
231 cd04112 Rab26 Rab26 subfamily. 98.2 6.7E-06 1.5E-10 63.0 7.0 64 147-211 49-116 (191)
232 cd03700 eEF2_snRNP_like_II EF2 98.2 2.8E-05 6E-10 52.7 9.2 75 26-104 5-91 (93)
233 cd01852 AIG1 AIG1 (avrRpt2-ind 98.2 1.1E-05 2.4E-10 62.2 8.1 78 132-210 33-125 (196)
234 cd04159 Arl10_like Arl10-like 98.2 6.1E-06 1.3E-10 60.3 6.4 68 143-211 39-111 (159)
235 cd01867 Rab8_Rab10_Rab13_like 98.2 1E-05 2.2E-10 60.5 7.6 63 148-211 52-118 (167)
236 COG0480 FusA Translation elong 98.1 2.1E-05 4.6E-10 71.2 10.3 101 2-108 268-392 (697)
237 PRK15467 ethanolamine utilizat 98.1 4.9E-06 1.1E-10 62.0 5.3 57 152-211 41-101 (158)
238 cd01868 Rab11_like Rab11-like. 98.1 1.2E-05 2.7E-10 59.7 7.3 100 111-211 13-118 (165)
239 cd04162 Arl9_Arfrp2_like Arl9/ 98.1 8.4E-06 1.8E-10 61.0 6.2 69 142-211 38-109 (164)
240 cd04149 Arf6 Arf6 subfamily. 98.1 9.9E-06 2.1E-10 60.8 6.5 68 143-211 48-120 (168)
241 cd04119 RJL RJL (RabJ-Like) su 98.1 1.8E-05 4E-10 58.6 7.8 65 146-211 47-120 (168)
242 cd04108 Rab36_Rab34 Rab34/Rab3 98.1 2.1E-05 4.6E-10 59.2 8.0 64 148-211 49-116 (170)
243 CHL00189 infB translation init 98.1 0.00012 2.5E-09 66.9 14.0 195 2-209 400-601 (742)
244 cd04101 RabL4 RabL4 (Rab-like4 98.1 1.8E-05 3.9E-10 58.7 7.4 65 146-211 50-117 (164)
245 cd04150 Arf1_5_like Arf1-Arf5- 98.1 1.1E-05 2.5E-10 59.9 6.3 68 143-211 39-111 (159)
246 cd01876 YihA_EngB The YihA (En 98.1 2.6E-05 5.6E-10 57.5 8.1 62 149-211 46-120 (170)
247 PRK14845 translation initiatio 98.0 3E-05 6.6E-10 72.9 10.1 90 15-106 681-782 (1049)
248 cd04156 ARLTS1 ARLTS1 subfamil 98.0 1.2E-05 2.6E-10 59.4 6.0 64 147-211 43-111 (160)
249 smart00176 RAN Ran (Ras-relate 98.0 3E-05 6.5E-10 60.1 8.3 64 147-211 43-109 (200)
250 cd04120 Rab12 Rab12 subfamily. 98.0 3.3E-05 7.1E-10 60.0 8.6 69 142-211 41-115 (202)
251 smart00177 ARF ARF-like small 98.0 2.2E-05 4.8E-10 59.3 7.5 69 142-211 51-124 (175)
252 cd00882 Ras_like_GTPase Ras-li 98.0 1E-05 2.2E-10 58.1 5.4 64 147-211 44-112 (157)
253 PTZ00099 rab6; Provisional 98.0 1.7E-05 3.6E-10 60.2 6.8 65 146-211 27-95 (176)
254 TIGR02528 EutP ethanolamine ut 98.0 7.7E-06 1.7E-10 59.3 4.5 57 151-211 38-98 (142)
255 PF00350 Dynamin_N: Dynamin fa 98.0 1.9E-05 4.1E-10 59.0 6.7 65 147-211 100-168 (168)
256 cd01865 Rab3 Rab3 subfamily. 98.0 3.6E-05 7.9E-10 57.3 8.2 63 148-211 50-116 (165)
257 cd04107 Rab32_Rab38 Rab38/Rab3 98.0 3.2E-05 6.8E-10 59.8 8.0 64 147-211 49-120 (201)
258 cd04110 Rab35 Rab35 subfamily. 98.0 3E-05 6.5E-10 59.9 7.8 63 148-211 55-120 (199)
259 cd04123 Rab21 Rab21 subfamily. 98.0 2.9E-05 6.2E-10 57.2 7.3 63 148-211 49-115 (162)
260 cd04140 ARHI_like ARHI subfami 98.0 2.5E-05 5.3E-10 58.3 7.0 65 146-211 47-118 (165)
261 cd00879 Sar1 Sar1 subfamily. 98.0 1.3E-05 2.7E-10 61.2 5.5 70 141-211 56-130 (190)
262 cd00877 Ran Ran (Ras-related n 98.0 2.8E-05 6.2E-10 58.2 7.3 64 147-211 48-114 (166)
263 PTZ00133 ADP-ribosylation fact 98.0 1.6E-05 3.6E-10 60.5 6.1 69 142-211 55-128 (182)
264 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.0 1.7E-05 3.8E-10 59.7 6.1 63 148-211 50-117 (172)
265 COG1084 Predicted GTPase [Gene 98.0 2.8E-05 6E-10 63.6 7.4 102 107-211 174-290 (346)
266 PTZ00369 Ras-like protein; Pro 98.0 1.1E-05 2.4E-10 61.7 4.9 64 147-211 52-120 (189)
267 PF09439 SRPRB: Signal recogni 98.0 8.2E-06 1.8E-10 62.0 4.0 65 146-211 47-122 (181)
268 PLN00223 ADP-ribosylation fact 98.0 2.1E-05 4.6E-10 59.9 6.4 69 142-211 55-128 (181)
269 cd04090 eEF2_II_snRNP Loc2 eEF 98.0 0.0001 2.2E-09 50.0 9.0 65 24-88 3-79 (94)
270 cd01850 CDC_Septin CDC/Septin. 98.0 5.8E-05 1.3E-09 61.4 9.2 76 134-211 47-153 (276)
271 cd04116 Rab9 Rab9 subfamily. 98.0 5.6E-05 1.2E-09 56.4 8.5 63 148-211 54-124 (170)
272 cd04122 Rab14 Rab14 subfamily. 98.0 3.7E-05 8.1E-10 57.3 7.4 64 147-211 50-117 (166)
273 cd04142 RRP22 RRP22 subfamily. 98.0 3.3E-05 7.1E-10 59.7 7.2 63 148-211 49-126 (198)
274 cd04127 Rab27A Rab27a subfamil 97.9 4.1E-05 9E-10 57.7 7.6 63 148-211 63-130 (180)
275 cd04139 RalA_RalB RalA/RalB su 97.9 1.6E-05 3.6E-10 58.7 5.2 64 147-211 47-115 (164)
276 cd04137 RheB Rheb (Ras Homolog 97.9 1.2E-05 2.5E-10 60.8 4.4 64 147-211 48-116 (180)
277 PLN03118 Rab family protein; P 97.9 3.9E-05 8.4E-10 59.7 7.3 64 147-211 61-130 (211)
278 cd00157 Rho Rho (Ras homology) 97.9 2.8E-05 6E-10 58.0 6.1 64 147-211 47-114 (171)
279 cd04146 RERG_RasL11_like RERG/ 97.9 2E-05 4.2E-10 58.7 5.2 63 148-211 47-116 (165)
280 cd04121 Rab40 Rab40 subfamily. 97.9 7.1E-05 1.5E-09 57.5 8.1 63 148-211 55-120 (189)
281 cd01874 Cdc42 Cdc42 subfamily. 97.9 4.2E-05 9.2E-10 57.8 6.8 63 148-211 49-115 (175)
282 smart00053 DYNc Dynamin, GTPas 97.9 4.8E-05 1E-09 60.5 7.1 63 148-211 125-202 (240)
283 cd04136 Rap_like Rap-like subf 97.9 4E-05 8.7E-10 56.6 6.4 63 148-211 49-116 (163)
284 smart00174 RHO Rho (Ras homolo 97.9 4E-05 8.6E-10 57.4 6.3 63 148-211 46-112 (174)
285 PLN03110 Rab GTPase; Provision 97.9 8.6E-05 1.9E-09 58.2 8.4 63 148-211 61-127 (216)
286 cd04176 Rap2 Rap2 subgroup. T 97.9 4.5E-05 9.6E-10 56.5 6.3 63 148-211 49-116 (163)
287 cd04118 Rab24 Rab24 subfamily. 97.9 8.9E-05 1.9E-09 56.7 8.1 63 148-211 50-115 (193)
288 cd04175 Rap1 Rap1 subgroup. T 97.9 2.9E-05 6.3E-10 57.7 5.1 63 148-211 49-116 (164)
289 cd04132 Rho4_like Rho4-like su 97.8 8E-05 1.7E-09 56.6 7.6 63 148-211 49-115 (187)
290 smart00173 RAS Ras subfamily o 97.8 3.2E-05 7E-10 57.3 5.2 63 148-211 48-115 (164)
291 cd00876 Ras Ras family. The R 97.8 5.5E-05 1.2E-09 55.5 6.3 64 147-211 46-114 (160)
292 KOG1191|consensus 97.8 4.1E-05 9E-10 65.6 6.2 95 108-202 275-379 (531)
293 cd04138 H_N_K_Ras_like H-Ras/N 97.8 3.9E-05 8.4E-10 56.4 5.5 63 148-211 49-116 (162)
294 cd04109 Rab28 Rab28 subfamily. 97.8 0.00012 2.7E-09 57.1 8.1 64 148-211 50-119 (215)
295 cd04144 Ras2 Ras2 subfamily. 97.8 4.9E-05 1.1E-09 58.2 5.7 63 148-211 47-116 (190)
296 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 5.7E-05 1.2E-09 55.1 5.7 49 162-211 2-52 (141)
297 cd04155 Arl3 Arl3 subfamily. 97.8 6.4E-05 1.4E-09 56.3 5.7 69 142-211 52-125 (173)
298 cd01871 Rac1_like Rac1-like su 97.8 9.4E-05 2E-09 55.9 6.7 64 147-211 48-115 (174)
299 cd04125 RabA_like RabA-like su 97.8 0.00011 2.3E-09 56.0 7.0 63 148-211 49-115 (188)
300 cd04126 Rab20 Rab20 subfamily. 97.8 0.00012 2.6E-09 57.6 7.4 67 144-211 40-110 (220)
301 PLN03071 GTP-binding nuclear p 97.7 0.00014 3E-09 57.1 7.6 64 147-211 61-127 (219)
302 cd04177 RSR1 RSR1 subgroup. R 97.7 5.8E-05 1.3E-09 56.4 5.2 63 148-211 49-116 (168)
303 cd01892 Miro2 Miro2 subfamily. 97.7 0.00014 3.1E-09 54.5 7.2 63 148-211 54-118 (169)
304 cd04111 Rab39 Rab39 subfamily. 97.7 8.1E-05 1.8E-09 58.1 6.1 64 148-211 52-119 (211)
305 cd04130 Wrch_1 Wrch-1 subfamil 97.7 0.00012 2.7E-09 54.9 6.8 63 148-211 48-114 (173)
306 cd04135 Tc10 TC10 subfamily. 97.7 0.0001 2.2E-09 55.2 6.2 63 148-211 48-114 (174)
307 cd04143 Rhes_like Rhes_like su 97.7 0.00012 2.6E-09 58.6 6.8 63 148-211 48-123 (247)
308 KOG0466|consensus 97.7 1.3E-05 2.9E-10 64.8 1.2 89 3-91 232-339 (466)
309 cd01870 RhoA_like RhoA-like su 97.6 0.00014 3E-09 54.5 5.7 64 147-211 48-115 (175)
310 PLN03108 Rab family protein; P 97.6 0.00036 7.9E-09 54.3 8.0 63 148-211 55-121 (210)
311 cd04148 RGK RGK subfamily. Th 97.6 0.00025 5.4E-09 55.7 6.7 63 146-211 48-116 (221)
312 PF08477 Miro: Miro-like prote 97.6 4.1E-05 8.8E-10 53.8 2.0 71 140-211 42-118 (119)
313 cd04128 Spg1 Spg1p. Spg1p (se 97.5 0.00049 1.1E-08 52.4 7.9 63 148-211 49-114 (182)
314 PRK13768 GTPase; Provisional 97.5 0.00018 3.9E-09 57.8 5.5 63 148-211 97-172 (253)
315 cd04133 Rop_like Rop subfamily 97.5 0.00036 7.8E-09 52.9 6.5 64 147-211 48-115 (176)
316 cd04117 Rab15 Rab15 subfamily. 97.5 0.00078 1.7E-08 50.0 8.1 63 148-211 49-115 (161)
317 cd04134 Rho3 Rho3 subfamily. 97.5 0.00028 6.1E-09 53.9 5.8 63 148-211 48-114 (189)
318 PF10662 PduV-EutP: Ethanolami 97.5 0.00021 4.5E-09 52.1 4.7 57 151-211 39-99 (143)
319 cd04131 Rnd Rnd subfamily. Th 97.4 0.00058 1.3E-08 51.8 7.2 63 148-211 49-115 (178)
320 cd03110 Fer4_NifH_child This p 97.4 0.00043 9.3E-09 52.4 6.2 63 146-211 91-153 (179)
321 COG0532 InfB Translation initi 97.4 0.00099 2.1E-08 57.9 8.4 91 14-106 406-497 (509)
322 cd01875 RhoG RhoG subfamily. 97.3 0.00083 1.8E-08 51.5 7.1 63 148-211 51-117 (191)
323 cd03702 IF2_mtIF2_II This fami 97.3 0.0019 4.2E-08 43.8 7.9 74 25-106 4-79 (95)
324 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.3 0.00076 1.6E-08 53.1 6.6 63 148-211 49-115 (222)
325 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.3 0.001 2.2E-08 50.7 7.1 63 148-211 53-119 (182)
326 PRK09563 rbgA GTPase YlqF; Rev 97.3 0.00033 7.2E-09 57.3 4.6 54 155-211 7-61 (287)
327 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.3 0.0012 2.6E-08 52.4 7.6 63 148-211 61-127 (232)
328 cd04102 RabL3 RabL3 (Rab-like3 97.3 0.0016 3.4E-08 50.6 8.0 38 148-185 54-91 (202)
329 PLN00116 translation elongatio 97.3 0.0018 4E-08 60.5 9.7 87 2-88 331-454 (843)
330 cd04104 p47_IIGP_like p47 (47- 97.3 0.00074 1.6E-08 52.1 6.1 59 148-211 52-117 (197)
331 COG0370 FeoB Fe2+ transport sy 97.3 0.0015 3.3E-08 58.3 8.4 101 108-211 10-118 (653)
332 cd01853 Toc34_like Toc34-like 97.2 0.004 8.6E-08 49.9 9.5 78 134-211 65-159 (249)
333 PLN00023 GTP-binding protein; 97.1 0.0029 6.3E-08 52.5 8.2 63 148-211 83-161 (334)
334 PF00025 Arf: ADP-ribosylation 97.1 0.0024 5.2E-08 48.3 7.1 72 139-211 49-125 (175)
335 cd01896 DRG The developmentall 97.1 0.0016 3.5E-08 51.6 6.4 66 135-201 34-106 (233)
336 PTZ00416 elongation factor 2; 97.0 0.0052 1.1E-07 57.5 9.9 87 2-88 327-450 (836)
337 COG1100 GTPase SAR1 and relate 97.0 0.0036 7.7E-08 48.6 7.7 63 148-211 54-121 (219)
338 KOG0090|consensus 97.0 0.0034 7.5E-08 48.5 7.2 75 135-210 69-154 (238)
339 COG4108 PrfC Peptide chain rel 96.8 0.0026 5.5E-08 54.3 5.7 100 2-107 266-381 (528)
340 PTZ00132 GTP-binding nuclear p 96.8 0.0047 1E-07 48.1 6.9 65 146-211 56-123 (215)
341 COG3640 CooC CO dehydrogenase 96.8 0.002 4.3E-08 50.7 4.6 63 146-211 132-195 (255)
342 PF00071 Ras: Ras family; Int 96.8 0.0056 1.2E-07 45.0 6.8 66 146-211 46-114 (162)
343 cd03111 CpaE_like This protein 96.7 0.003 6.6E-08 43.7 4.5 60 149-210 44-106 (106)
344 cd04129 Rho2 Rho2 subfamily. 96.7 0.0051 1.1E-07 46.8 6.1 63 148-211 49-115 (187)
345 cd03701 IF2_IF5B_II IF2_IF5B_I 96.7 0.015 3.2E-07 39.5 7.4 60 25-88 4-64 (95)
346 cd03703 aeIF5B_II aeIF5B_II: T 96.6 0.028 6E-07 39.1 8.5 79 25-105 4-93 (110)
347 TIGR02836 spore_IV_A stage IV 96.6 0.0062 1.3E-07 52.1 6.2 63 148-211 91-190 (492)
348 TIGR00991 3a0901s02IAP34 GTP-b 96.6 0.016 3.5E-07 47.8 8.4 70 141-210 79-162 (313)
349 KOG0465|consensus 96.5 0.0073 1.6E-07 53.4 6.5 99 1-107 297-420 (721)
350 cd01873 RhoBTB RhoBTB subfamil 96.5 0.0081 1.8E-07 46.3 6.2 62 147-211 65-130 (195)
351 cd00066 G-alpha G protein alph 96.5 0.011 2.3E-07 49.2 6.9 75 136-211 149-238 (317)
352 COG2262 HflX GTPases [General 96.4 0.0078 1.7E-07 50.9 5.9 64 147-211 239-314 (411)
353 cd02036 MinD Bacterial cell di 96.4 0.0092 2E-07 44.7 5.7 61 149-211 64-124 (179)
354 KOG0052|consensus 96.3 0.0039 8.5E-08 52.3 3.4 111 26-144 186-297 (391)
355 smart00275 G_alpha G protein a 96.2 0.019 4.1E-07 48.2 7.3 77 134-211 170-261 (342)
356 PF04670 Gtr1_RagA: Gtr1/RagA 96.2 0.025 5.5E-07 44.8 7.6 78 133-211 32-121 (232)
357 COG3596 Predicted GTPase [Gene 96.2 0.016 3.5E-07 46.7 6.3 65 146-210 85-157 (296)
358 KOG1954|consensus 96.2 0.01 2.3E-07 49.7 5.3 63 148-211 147-221 (532)
359 KOG0078|consensus 96.2 0.044 9.5E-07 42.3 8.3 75 136-211 47-127 (207)
360 cd02037 MRP-like MRP (Multiple 96.1 0.02 4.4E-07 42.8 6.4 64 146-211 66-131 (169)
361 KOG0092|consensus 96.1 0.02 4.3E-07 43.6 6.1 64 148-211 54-120 (200)
362 KOG0084|consensus 96.0 0.066 1.4E-06 41.0 8.4 89 122-211 30-124 (205)
363 KOG0073|consensus 96.0 0.038 8.2E-07 41.1 6.9 81 126-211 42-127 (185)
364 cd01855 YqeH YqeH. YqeH is an 96.0 0.015 3.2E-07 44.4 5.1 51 158-211 21-71 (190)
365 COG1149 MinD superfamily P-loo 95.9 0.022 4.9E-07 45.7 6.0 60 148-210 164-223 (284)
366 PF06858 NOG1: Nucleolar GTP-b 95.9 0.044 9.5E-07 33.4 5.7 48 163-211 4-57 (58)
367 KOG0075|consensus 95.8 0.052 1.1E-06 39.7 6.8 71 140-211 57-132 (186)
368 PF03029 ATP_bind_1: Conserved 95.7 0.016 3.5E-07 46.1 4.5 62 149-211 92-166 (238)
369 cd02038 FleN-like FleN is a me 95.7 0.021 4.6E-07 41.4 4.7 62 148-211 45-107 (139)
370 PF04548 AIG1: AIG1 family; I 95.7 0.034 7.3E-07 43.4 6.1 69 140-209 41-124 (212)
371 TIGR01007 eps_fam capsular exo 95.7 0.036 7.9E-07 42.7 6.2 65 146-211 126-190 (204)
372 KOG1144|consensus 95.7 0.014 3E-07 53.0 4.2 72 21-92 935-1007(1064)
373 PTZ00258 GTP-binding protein; 95.5 0.019 4.2E-07 48.9 4.2 35 148-182 85-126 (390)
374 KOG0094|consensus 95.4 0.11 2.4E-06 39.8 7.6 74 137-210 60-137 (221)
375 TIGR01969 minD_arch cell divis 95.4 0.047 1E-06 43.3 6.0 64 146-211 107-170 (251)
376 cd04103 Centaurin_gamma Centau 95.3 0.065 1.4E-06 39.6 6.2 58 148-211 47-109 (158)
377 COG5192 BMS1 GTP-binding prote 95.3 0.054 1.2E-06 48.0 6.3 63 145-210 110-172 (1077)
378 PHA02518 ParA-like protein; Pr 95.2 0.053 1.1E-06 41.8 5.7 63 146-210 75-142 (211)
379 COG1163 DRG Predicted GTPase [ 95.2 0.032 7E-07 46.0 4.6 66 135-201 97-169 (365)
380 cd03112 CobW_like The function 95.2 0.025 5.4E-07 42.0 3.7 61 147-211 86-156 (158)
381 KOG0469|consensus 95.2 0.012 2.6E-07 51.2 2.0 87 17-105 373-471 (842)
382 TIGR01968 minD_bact septum sit 95.1 0.035 7.6E-07 44.2 4.6 63 147-211 111-173 (261)
383 cd01900 YchF YchF subfamily. 95.1 0.027 5.9E-07 45.8 3.9 34 149-182 63-103 (274)
384 KOG1489|consensus 95.1 0.078 1.7E-06 43.7 6.3 78 134-211 229-322 (366)
385 cd02035 ArsA ArsA ATPase funct 95.0 0.065 1.4E-06 41.9 5.6 64 148-211 114-180 (217)
386 CHL00175 minD septum-site dete 95.0 0.043 9.3E-07 44.6 4.8 63 147-211 126-188 (281)
387 KOG0087|consensus 95.0 0.087 1.9E-06 40.8 6.0 98 113-211 26-129 (222)
388 PRK09601 GTP-binding protein Y 94.9 0.038 8.3E-07 46.7 4.3 35 148-182 66-107 (364)
389 cd03115 SRP The signal recogni 94.8 0.1 2.2E-06 39.1 6.1 63 146-211 81-149 (173)
390 cd01856 YlqF YlqF. Proteins o 94.8 0.058 1.3E-06 40.4 4.7 48 155-204 2-50 (171)
391 KOG0070|consensus 94.7 0.068 1.5E-06 40.4 4.7 71 140-211 53-128 (181)
392 PRK01889 GTPase RsgA; Reviewed 94.4 0.087 1.9E-06 44.5 5.4 42 169-211 110-152 (356)
393 KOG0093|consensus 94.4 0.1 2.2E-06 38.2 4.9 62 149-211 71-136 (193)
394 KOG2484|consensus 94.3 0.093 2E-06 44.4 5.2 62 150-211 124-187 (435)
395 KOG1486|consensus 94.3 0.086 1.9E-06 42.2 4.6 61 140-201 101-168 (364)
396 PRK12289 GTPase RsgA; Reviewed 94.2 0.12 2.5E-06 43.7 5.6 42 169-211 87-130 (352)
397 cd03114 ArgK-like The function 94.2 0.12 2.6E-06 37.9 5.1 57 147-211 91-147 (148)
398 KOG1532|consensus 94.1 0.26 5.5E-06 40.1 7.0 64 147-211 115-191 (366)
399 COG4917 EutP Ethanolamine util 94.1 0.06 1.3E-06 38.3 3.1 35 152-186 41-79 (148)
400 KOG0098|consensus 94.1 0.27 5.9E-06 37.5 6.8 73 139-211 44-121 (216)
401 KOG0395|consensus 94.0 0.23 5E-06 38.3 6.6 66 145-211 48-118 (196)
402 KOG0076|consensus 94.0 0.071 1.5E-06 40.1 3.5 75 134-210 55-135 (197)
403 TIGR01425 SRP54_euk signal rec 93.8 0.18 3.9E-06 43.6 6.1 62 146-211 181-249 (429)
404 TIGR00064 ftsY signal recognit 93.8 0.17 3.7E-06 41.2 5.7 63 146-211 153-227 (272)
405 PF01656 CbiA: CobQ/CobB/MinD/ 93.8 0.041 8.8E-07 41.7 2.0 62 148-211 95-158 (195)
406 cd01854 YjeQ_engC YjeQ/EngC. 93.7 0.11 2.5E-06 42.4 4.6 42 169-211 76-119 (287)
407 PRK00098 GTPase RsgA; Reviewed 93.6 0.15 3.3E-06 41.9 5.3 42 169-211 78-121 (298)
408 PRK13849 putative crown gall t 93.6 0.13 2.9E-06 40.7 4.7 62 146-210 82-149 (231)
409 cd01859 MJ1464 MJ1464. This f 93.1 0.28 6E-06 36.0 5.5 38 166-203 7-44 (156)
410 cd02032 Bchl_like This family 93.1 0.24 5.2E-06 39.9 5.6 64 147-211 115-182 (267)
411 KOG2486|consensus 93.0 0.47 1E-05 38.5 6.9 65 146-211 181-258 (320)
412 KOG0082|consensus 92.7 0.5 1.1E-05 39.8 6.9 80 131-211 178-272 (354)
413 KOG0095|consensus 92.4 1 2.2E-05 33.1 7.3 70 141-211 47-122 (213)
414 TIGR03596 GTPase_YlqF ribosome 92.1 0.17 3.6E-06 41.2 3.4 42 155-196 4-46 (276)
415 PRK09435 membrane ATPase/prote 92.0 0.12 2.6E-06 43.2 2.6 32 146-180 147-178 (332)
416 smart00785 AARP2CN AARP2CN (NU 92.0 1.6 3.6E-05 28.7 7.4 70 2-74 4-80 (83)
417 PRK10416 signal recognition pa 91.8 0.47 1E-05 39.5 5.8 63 146-211 195-269 (318)
418 PF08142 AARP2CN: AARP2CN (NUC 91.7 2.1 4.5E-05 28.3 7.7 72 2-76 4-84 (85)
419 PF00448 SRP54: SRP54-type pro 91.6 0.38 8.2E-06 37.1 4.7 62 146-211 82-150 (196)
420 KOG0394|consensus 91.6 0.33 7.2E-06 36.9 4.2 60 151-211 61-128 (210)
421 TIGR00157 ribosome small subun 91.4 0.31 6.7E-06 38.9 4.3 43 168-211 33-77 (245)
422 TIGR03815 CpaE_hom_Actino heli 91.4 0.27 5.9E-06 40.8 4.1 61 147-210 204-264 (322)
423 TIGR00750 lao LAO/AO transport 91.4 0.44 9.5E-06 39.3 5.2 58 146-211 125-182 (300)
424 KOG0080|consensus 91.0 0.56 1.2E-05 35.0 4.8 79 133-211 45-127 (209)
425 KOG1424|consensus 90.9 0.41 8.8E-06 42.0 4.6 57 155-211 156-215 (562)
426 TIGR03029 EpsG chain length de 90.8 0.72 1.6E-05 37.3 5.9 63 147-210 212-274 (274)
427 KOG0077|consensus 90.8 0.28 6E-06 36.7 3.0 66 145-211 61-131 (193)
428 cd02042 ParA ParA and ParB of 90.7 0.46 1E-05 32.2 4.1 45 148-194 40-84 (104)
429 TIGR03597 GTPase_YqeH ribosome 90.3 0.61 1.3E-05 39.5 5.2 49 160-211 52-100 (360)
430 PRK10818 cell division inhibit 90.2 0.68 1.5E-05 37.2 5.3 49 147-197 113-161 (270)
431 KOG2423|consensus 90.2 0.77 1.7E-05 39.2 5.6 49 163-211 205-254 (572)
432 PRK13185 chlL protochlorophyll 90.1 0.56 1.2E-05 37.8 4.7 64 146-210 116-183 (270)
433 PRK00771 signal recognition pa 90.1 0.89 1.9E-05 39.6 6.1 37 148-184 176-218 (437)
434 cd01899 Ygr210 Ygr210 subfamil 90.0 0.56 1.2E-05 39.1 4.7 36 148-183 69-111 (318)
435 PRK14722 flhF flagellar biosyn 90.0 0.71 1.5E-05 39.3 5.3 52 146-197 214-271 (374)
436 KOG0448|consensus 89.9 0.55 1.2E-05 42.6 4.7 61 149-210 207-270 (749)
437 KOG0079|consensus 89.8 2 4.4E-05 31.6 6.8 72 139-211 46-122 (198)
438 KOG1490|consensus 89.8 0.53 1.1E-05 41.3 4.4 63 148-211 215-291 (620)
439 PRK14974 cell division protein 89.7 0.9 2E-05 38.1 5.7 61 147-211 222-289 (336)
440 TIGR00993 3a0901s04IAP86 chlor 89.7 1.5 3.3E-05 40.1 7.3 68 143-210 161-245 (763)
441 CHL00072 chlL photochlorophyll 89.5 0.68 1.5E-05 38.0 4.7 64 147-211 115-182 (290)
442 KOG1145|consensus 89.4 0.57 1.2E-05 41.6 4.4 69 16-88 322-391 (683)
443 PRK09602 translation-associate 89.3 0.55 1.2E-05 40.3 4.2 35 148-182 72-113 (396)
444 COG1161 Predicted GTPases [Gen 89.3 0.62 1.4E-05 38.8 4.4 57 152-211 14-71 (322)
445 PRK10037 cell division protein 89.2 0.9 2E-05 36.2 5.2 58 146-211 116-173 (250)
446 TIGR01281 DPOR_bchL light-inde 89.2 0.72 1.6E-05 37.1 4.7 65 146-211 114-182 (268)
447 cd02117 NifH_like This family 89.0 0.74 1.6E-05 35.7 4.5 65 146-211 115-185 (212)
448 PF00503 G-alpha: G-protein al 89.0 1.6 3.6E-05 37.2 6.9 77 134-211 221-313 (389)
449 COG0455 flhG Antiactivator of 88.5 1.1 2.4E-05 36.2 5.2 61 149-211 114-176 (262)
450 PRK13796 GTPase YqeH; Provisio 87.9 1.3 2.8E-05 37.6 5.5 46 163-211 60-106 (365)
451 PRK11670 antiporter inner memb 87.8 1.4 3E-05 37.5 5.7 65 146-210 214-278 (369)
452 TIGR01005 eps_transp_fam exopo 87.1 1.6 3.4E-05 40.7 6.1 64 147-211 655-718 (754)
453 KOG0083|consensus 86.2 0.87 1.9E-05 32.8 3.0 63 148-211 47-113 (192)
454 TIGR03371 cellulose_yhjQ cellu 85.9 1.2 2.6E-05 35.1 4.1 32 149-182 116-147 (246)
455 PF10609 ParA: ParA/MinD ATPas 85.9 2.7 5.8E-05 27.6 4.9 59 150-209 3-62 (81)
456 COG0536 Obg Predicted GTPase [ 85.3 4.7 0.0001 33.8 7.2 66 145-211 204-285 (369)
457 PF00735 Septin: Septin; Inte 85.2 3.9 8.5E-05 33.4 6.8 39 171-211 113-152 (281)
458 KOG0086|consensus 84.7 4.4 9.5E-05 30.0 6.1 63 148-210 58-123 (214)
459 PRK09841 cryptic autophosphory 84.4 3 6.5E-05 38.8 6.5 64 147-211 640-703 (726)
460 TIGR00959 ffh signal recogniti 84.4 2.5 5.3E-05 36.8 5.5 62 146-211 181-249 (428)
461 cd02040 NifH NifH gene encodes 84.2 1.8 3.9E-05 34.7 4.4 37 146-182 115-152 (270)
462 PRK10867 signal recognition pa 84.0 2.4 5.1E-05 36.9 5.3 38 146-183 182-225 (433)
463 PRK00090 bioD dithiobiotin syn 83.6 1.4 3E-05 34.3 3.4 64 146-211 102-172 (222)
464 TIGR00347 bioD dethiobiotin sy 83.0 3.8 8.3E-05 30.2 5.5 62 146-209 98-166 (166)
465 PRK12727 flagellar biosynthesi 82.9 2.9 6.4E-05 37.3 5.4 62 146-211 427-494 (559)
466 KOG2485|consensus 82.6 2.4 5.3E-05 35.0 4.5 61 148-211 22-83 (335)
467 cd00550 ArsA_ATPase Oxyanion-t 82.1 3.7 8.1E-05 32.9 5.4 65 147-211 124-199 (254)
468 KOG0088|consensus 81.9 1.7 3.7E-05 32.3 3.1 65 146-211 60-128 (218)
469 KOG0074|consensus 81.9 2.5 5.5E-05 30.9 3.8 63 147-210 61-128 (185)
470 PRK11519 tyrosine kinase; Prov 80.8 5.4 0.00012 37.1 6.7 64 147-211 635-698 (719)
471 TIGR03018 pepcterm_TyrKin exop 80.7 4.5 9.8E-05 31.2 5.3 58 149-209 150-207 (207)
472 PRK12726 flagellar biosynthesi 80.6 3 6.6E-05 35.7 4.6 61 147-211 285-352 (407)
473 PRK12288 GTPase RsgA; Reviewed 79.3 4.9 0.00011 33.9 5.4 41 170-211 119-160 (347)
474 KOG1547|consensus 79.2 18 0.0004 29.1 8.1 75 134-210 88-193 (336)
475 COG4963 CpaE Flp pilus assembl 79.0 3.2 7E-05 35.1 4.2 62 148-211 218-281 (366)
476 cd01851 GBP Guanylate-binding 78.9 2 4.2E-05 33.8 2.8 37 146-182 58-102 (224)
477 PRK06731 flhF flagellar biosyn 78.6 5.2 0.00011 32.5 5.2 62 147-211 154-221 (270)
478 KOG0780|consensus 78.5 4 8.6E-05 35.0 4.5 41 146-186 182-228 (483)
479 cd01983 Fer4_NifH The Fer4_Nif 77.2 7.6 0.00016 25.0 5.0 42 149-190 35-77 (99)
480 KOG0072|consensus 77.2 5.9 0.00013 29.1 4.5 65 146-211 60-129 (182)
481 PF03193 DUF258: Protein of un 77.1 1.4 3.1E-05 32.8 1.5 30 129-161 71-100 (161)
482 KOG0097|consensus 76.4 13 0.00028 27.1 6.1 63 148-210 60-125 (215)
483 PRK11889 flhF flagellar biosyn 76.3 5.2 0.00011 34.6 4.7 62 147-211 320-387 (436)
484 COG5019 CDC3 Septin family pro 76.0 23 0.0005 30.0 8.3 75 134-210 66-171 (373)
485 KOG0096|consensus 75.9 11 0.00024 29.1 5.8 63 148-211 59-124 (216)
486 PRK12723 flagellar biosynthesi 75.2 7.8 0.00017 33.3 5.6 63 146-211 253-322 (388)
487 PRK13231 nitrogenase reductase 75.1 5.6 0.00012 31.8 4.5 57 146-202 112-169 (264)
488 KOG0099|consensus 74.2 12 0.00026 30.4 6.0 50 134-183 188-237 (379)
489 KOG0071|consensus 74.1 32 0.0007 25.3 7.6 45 140-184 53-97 (180)
490 KOG3883|consensus 73.6 10 0.00022 28.2 5.0 63 148-211 60-128 (198)
491 PF05049 IIGP: Interferon-indu 73.3 5.3 0.00011 34.1 4.0 65 142-211 79-151 (376)
492 cd07021 Clp_protease_NfeD_like 73.1 7.4 0.00016 29.5 4.5 54 155-209 11-66 (178)
493 cd04178 Nucleostemin_like Nucl 72.5 3.1 6.8E-05 31.3 2.3 48 108-158 124-172 (172)
494 COG0541 Ffh Signal recognition 72.1 14 0.0003 32.1 6.3 40 146-185 181-226 (451)
495 PRK12724 flagellar biosynthesi 71.4 9.2 0.0002 33.2 5.1 63 146-211 298-369 (432)
496 TIGR01287 nifH nitrogenase iro 71.3 5.3 0.00011 32.2 3.6 37 147-183 115-152 (275)
497 KOG3022|consensus 71.2 7.3 0.00016 31.8 4.2 59 144-202 153-212 (300)
498 KOG1980|consensus 70.5 5.1 0.00011 36.2 3.4 52 155-208 127-178 (754)
499 KOG1707|consensus 70.0 7.3 0.00016 35.0 4.2 62 149-211 57-125 (625)
500 cd01849 YlqF_related_GTPase Yl 69.9 3.2 6.9E-05 30.3 1.8 48 108-158 107-155 (155)
No 1
>KOG0460|consensus
Probab=99.93 E-value=1.2e-26 Score=186.00 Aligned_cols=133 Identities=58% Similarity=0.917 Sum_probs=119.3
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
.|||++|+++|.|.|+.+.||.|||.++|.++|+|||++|+++.|.+|+||++.+...++..+..|+.||+|++.+++|.
T Consensus 235 kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~ 314 (449)
T KOG0460|consen 235 KLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQ 314 (449)
T ss_pred HHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcc
Confidence 69999999999999999999999999999999999999999999999999999998888778999999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEE
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITI 136 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv 136 (211)
|||++++++++++.++++||++++.+.. .....+|++.+++.+ +.|-+|...+
T Consensus 315 AGDn~G~LlRGik~~dvkRGmvl~~pGs-vk~~~k~ea~~YiLs-k~EGGR~~pf 367 (449)
T KOG0460|consen 315 AGDNLGALLRGIKREDVKRGMVLAKPGS-VKPHNKFEAQLYILS-KEEGGRHKPF 367 (449)
T ss_pred cccceehhhhcCCHHHHhcccEEecCCc-ccccceeeEEEEEEE-hhhCCCccch
Confidence 9999999999999999999999998875 555677887775543 4556665443
No 2
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.91 E-value=5.4e-24 Score=182.71 Aligned_cols=140 Identities=34% Similarity=0.503 Sum_probs=126.8
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|++ +++|.+..++||||||+++|++++.|++++|+|++|.+++||+|.++|++. .++|++|+++++++++|.
T Consensus 215 tLl~~l~~-i~~p~~~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~--~~~VksI~~~~~~v~~a~ 291 (447)
T PLN00043 215 TLLEALDQ-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGL--TTEVKSVEMHHESLQEAL 291 (447)
T ss_pred HHHHHHhh-cCCCccccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCC--EEEEEEEEECCeEeCEec
Confidence 58999998 778889999999999999999999999999999999999999999999975 899999999999999999
Q ss_pred ccCceehhccCCCccccccccccccc-chhhhhhhhcccccccccchhhcccceEEeEeEEEee
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKP-VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYA 144 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~-~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~ 144 (211)
|||+|+++|++++..+++||+++++. ..++.....|.+.+....++....+||+..+++++..
T Consensus 292 aGd~v~i~l~~~~~~~i~rG~vl~~~~~~p~~~~~~F~A~i~~l~~~~~i~~gy~~~~~~~t~~ 355 (447)
T PLN00043 292 PGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSH 355 (447)
T ss_pred CCCeEEEEECCCCHhhCCCccEEccCCCCCCccccEEEEEEEEECCCCCCCCCCeEEEEEccCE
Confidence 99999999999988999999999986 4555678889999987788999999998776655544
No 3
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.8e-24 Score=175.58 Aligned_cols=180 Identities=27% Similarity=0.390 Sum_probs=148.8
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+||++||. +++|.+..|+||||||+++|.+.+.|++..|||++|.+++||+|.++|++. ...|+||++++++.++|.
T Consensus 213 TLleaLd~-~~~p~~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~--~~evksie~~~~~~~~a~ 289 (428)
T COG5256 213 TLLEALDQ-LEPPERPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGV--VGEVKSIEMHHEEISQAE 289 (428)
T ss_pred hHHHHHhc-cCCCCCCCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcc--eEEEeeeeecccccccCC
Confidence 69999997 788999999999999999999999999999999999999999999999974 899999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeeeCCc---eeEeecCCcc
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENR---HYSHTDCPGH 158 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~---~~~~iDtPG~ 158 (211)
+||++++++++++.+|+++|+++.+...++..+..|.+.+....++.....|||..++.++....-. -+.++|. +-
T Consensus 290 ~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~~t~s~~f~a~i~vl~~p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~-~t 368 (428)
T COG5256 290 PGDNVGFNVRGVEKNDIRRGDVIGHSDNPPTVSPEFTAQIIVLWHPGIITSGYTPVLHAHTAQVACRIAELLSKLDP-RT 368 (428)
T ss_pred CCCeEEEEecCCchhccCCccEeccCCCCcccccceEEEEEEEecCccccCCCccEEEecccceeeeHHHHHHhhCc-cc
Confidence 9999999999999999999999999888888778999999999999999999999988776554321 1223443 11
Q ss_pred cccHhHHhhhccccceEEEEEeccCCC
Q psy9646 159 ADYIKNMITGTSQMDGAILVVAATDGA 185 (211)
Q Consensus 159 ~~~~~~~~~~~~~~d~~~~vvd~~~~~ 185 (211)
.+-..+--.-+...|.++..+.....+
T Consensus 369 ~k~~~~~p~f~k~g~~~iv~i~~~kP~ 395 (428)
T COG5256 369 GKKLEENPQFLKRGDAAIVKIEPEKPL 395 (428)
T ss_pred ccccccChhhhhcCceEEEEEEecCce
Confidence 111112223345567777777765444
No 4
>PRK12735 elongation factor Tu; Reviewed
Probab=99.90 E-value=2.6e-23 Score=176.58 Aligned_cols=143 Identities=46% Similarity=0.732 Sum_probs=124.1
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|++.+|+|.+..++||||+|+++|++++.|++++|+|++|.+++||++.++|.+.+.+++|++|+++++++++|.
T Consensus 193 ~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~ 272 (396)
T PRK12735 193 ELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQ 272 (396)
T ss_pred HHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEEC
Confidence 68999999888788889999999999999999999999999999999999999999975446899999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccc-----hhhcccceEEeEeEEEeee
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNA-----PEEKARGITINVAHVEYAT 145 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~-----~~e~~rg~tv~~~~~~~~~ 145 (211)
|||+++++|++++..++++|++++++.. ......|.+.+....+ +....+|++..+++++...
T Consensus 273 aGd~v~l~L~~i~~~~i~rG~vl~~~~~-~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~ 340 (396)
T PRK12735 273 AGDNVGVLLRGTKREDVERGQVLAKPGS-IKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDV 340 (396)
T ss_pred CCCEEEEEeCCCcHHHCCcceEEEcCCC-CCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceE
Confidence 9999999999999999999999998753 3446778888876655 3456678888777666653
No 5
>PRK00049 elongation factor Tu; Reviewed
Probab=99.90 E-value=4.3e-23 Score=175.17 Aligned_cols=143 Identities=45% Similarity=0.733 Sum_probs=123.8
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|++.++.|.+..++||||+|+++|++++.|++++|+|++|.+++||++.++|.+.+..++|+||+++++++++|.
T Consensus 193 ~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~ 272 (396)
T PRK00049 193 ELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQ 272 (396)
T ss_pred HHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEc
Confidence 68999999888788889999999999999999999999999999999999999999874345899999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccc-----hhhcccceEEeEeEEEeee
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNA-----PEEKARGITINVAHVEYAT 145 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~-----~~e~~rg~tv~~~~~~~~~ 145 (211)
+||+|+++|++++..++++|++++++.. ......|.+.+....+ +.....|++..+++++...
T Consensus 273 ~Gd~v~l~l~~i~~~~i~~G~vl~~~~~-~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~ 340 (396)
T PRK00049 273 AGDNVGALLRGIKREDVERGQVLAKPGS-ITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDV 340 (396)
T ss_pred CCCEEEEEeCCCCHHHCCcceEEecCCC-CCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcE
Confidence 9999999999998899999999998753 3345778888776655 4566778888777666553
No 6
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.2e-24 Score=169.30 Aligned_cols=134 Identities=51% Similarity=0.839 Sum_probs=115.4
Q ss_pred ChHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceeccee
Q psy9646 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEA 80 (211)
Q Consensus 1 ~~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a 80 (211)
.+|++++++++|.|.|+.++||+|||.++|++.++|++++|+|+.|.+++|+.+.+...++..++.+.+++++++..+++
T Consensus 190 ~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~ 269 (394)
T COG0050 190 EELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEG 269 (394)
T ss_pred HHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhcc
Confidence 37999999999999999999999999999999999999999999999999999999766555688999999999999999
Q ss_pred cccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEE
Q psy9646 81 QAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITI 136 (211)
Q Consensus 81 ~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv 136 (211)
.|||++++.|++..+.++.||++++.+.. ....++|.+.++.. .+.|.+|...+
T Consensus 270 ~AGdnvg~llRg~~r~~veRGqvLakpgs-i~ph~kfeaevyvL-~keeggrhtpf 323 (394)
T COG0050 270 QAGDNVGVLLRGVKREDVERGQVLAKPGS-IKPHTKFEAEVYVL-SKEEGGRHTPF 323 (394)
T ss_pred ccCCCcceEEEeccccceecceEeecCCc-ccccceeeEEEEEE-ecccCCCCCCc
Confidence 99999999999999999999999998753 33346677766543 34555555433
No 7
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.90 E-value=3.9e-23 Score=177.21 Aligned_cols=141 Identities=29% Similarity=0.467 Sum_probs=126.0
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|++ +++|.+..++||||+|+++|++++.|++++|+|++|.+++||+|.++|++. .++|++|+.+++++++|.
T Consensus 207 ~L~~~l~~-~~~~~~~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~--~~~VksI~~~~~~~~~a~ 283 (425)
T PRK12317 207 TLLEALDN-LKPPEKPTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGV--VGEVKSIEMHHEELPQAE 283 (425)
T ss_pred HHHHHHhc-CCCCccccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCC--eEEEEEEEECCcccCEEC
Confidence 58999988 788888889999999999999999999999999999999999999999975 899999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeee
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYAT 145 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~ 145 (211)
|||+|+++|++++..++++|++++.+..++..+..|.+.+....++.....|++..++.++...
T Consensus 284 aG~~v~i~l~~~~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~~~~~i~~G~~~~~~~~t~~~ 347 (425)
T PRK12317 284 PGDNIGFNVRGVGKKDIKRGDVCGHPDNPPTVAEEFTAQIVVLQHPSAITVGYTPVFHAHTAQV 347 (425)
T ss_pred CCCeEEEEECCCCHHHccCccEecCCCCCCCcccEEEEEEEEECCCCcCCCCCeEEEEEcCcEE
Confidence 9999999999999999999999998776666778899888777777777888887776655443
No 8
>PLN03126 Elongation factor Tu; Provisional
Probab=99.90 E-value=6.3e-23 Score=176.97 Aligned_cols=152 Identities=38% Similarity=0.598 Sum_probs=128.9
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|++++++|.|+.++||||+|+++|+++|.|+|++|+|++|.+++||+|.++|.+++..++|++|+.+++++++|.
T Consensus 270 ~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~ 349 (478)
T PLN03126 270 ELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEAL 349 (478)
T ss_pred HHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEe
Confidence 58999999777788889999999999999999999999999999999999999999987556799999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccch-----hhcccceEEeEeEEEeeeCCceeEeecC
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAP-----EEKARGITINVAHVEYATENRHYSHTDC 155 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~-----~e~~rg~tv~~~~~~~~~~~~~~~~iDt 155 (211)
+||+|+++|++++..++++|++++.+.. ......|.+.+....++ .....|+...+++++.... .++..++.
T Consensus 350 aG~~v~l~L~~i~~~di~rG~VL~~~~~-~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~-~~I~~i~~ 426 (478)
T PLN03126 350 AGDNVGLLLRGIQKADIQRGMVLAKPGS-ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVT-GKVTSIMN 426 (478)
T ss_pred CCceeeeeccCCcHHHcCCccEEecCCC-CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEE-EEEEEEec
Confidence 9999999999999999999999998753 34467788888766553 4567788887777765543 45665553
No 9
>PLN03127 Elongation factor Tu; Provisional
Probab=99.89 E-value=8.7e-23 Score=175.15 Aligned_cols=142 Identities=43% Similarity=0.706 Sum_probs=122.3
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCc--eeeEEEEEEEecceecce
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGR--QFKTTVTGIEMFHKILDE 79 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~--~~~~~v~~i~~~~~~~~~ 79 (211)
+|+++|++.+|.|.+..++||||+|+++|++++.|+|++|+|++|.+++||++.++|.+. +.+++|++|+++++++++
T Consensus 242 ~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~ 321 (447)
T PLN03127 242 KLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQ 321 (447)
T ss_pred HHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCE
Confidence 689999998888888999999999999999999999999999999999999999987532 358999999999999999
Q ss_pred ecccCceehhccCCCcccccccccccccchhhhhhhhcccccccccch-----hhcccceEEeEeEEEee
Q psy9646 80 AQAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAP-----EEKARGITINVAHVEYA 144 (211)
Q Consensus 80 a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~-----~e~~rg~tv~~~~~~~~ 144 (211)
|.|||+++++|++++..++++|++++++. .......|.+.+....++ .....|++..+++++..
T Consensus 322 a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~-~~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~ 390 (447)
T PLN03127 322 GQAGDNVGLLLRGLKREDVQRGQVICKPG-SIKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTAD 390 (447)
T ss_pred EcCCCEEEEEeCCCCHHHCCCccEEecCC-CCceeEEEEEEEEEEcccccccCcccccCceeEEEeeecc
Confidence 99999999999999999999999999874 345678898888765553 44566777776666554
No 10
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.89 E-value=4.4e-23 Score=176.96 Aligned_cols=141 Identities=29% Similarity=0.485 Sum_probs=125.3
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|++ +++|.+..++||||+|+++|+++|.|++++|+|++|.+++||+|.+.|.+. .++|++|+++++++++|.
T Consensus 209 ~l~~~l~~-~~~~~~~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~--~~~VksI~~~~~~~~~a~ 285 (426)
T TIGR00483 209 TLLEALDA-LEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGV--SGEVKSIEMHHEQIEQAE 285 (426)
T ss_pred HHHHHHhc-CCCCCCccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCc--EEEEEEEEECCcccCEEc
Confidence 69999988 777888889999999999999999999999999999999999999999974 899999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeee
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYAT 145 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~ 145 (211)
|||+|+++|++++..++++|++++.+..+++....|.+.+....++.....|++.-+++++...
T Consensus 286 aG~~v~i~l~~i~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~ 349 (426)
T TIGR00483 286 PGDNIGFNVRGVSKKDIRRGDVCGHPDNPPKVAKEFTAQIVVLQHPGAITVGYTPVFHCHTAQI 349 (426)
T ss_pred CCCEEEEEECCCChhhcccceEEecCCCCCceeeEEEEEEEEECCCCccCCCCeEEEEecCcEE
Confidence 9999999999999999999999998766666677899988777777777888777666655543
No 11
>PRK12736 elongation factor Tu; Reviewed
Probab=99.89 E-value=9e-23 Score=173.20 Aligned_cols=143 Identities=47% Similarity=0.712 Sum_probs=123.3
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|++++|+|.++.++||||+|+++|++++.|++++|+|++|.+++||++.++|.+.+.+++|++|+++++++++|.
T Consensus 191 ~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~ 270 (394)
T PRK12736 191 ELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQ 270 (394)
T ss_pred HHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEEC
Confidence 68999999888888999999999999999999999999999999999999999999974345799999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccc-----hhhcccceEEeEeEEEeee
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNA-----PEEKARGITINVAHVEYAT 145 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~-----~~e~~rg~tv~~~~~~~~~ 145 (211)
|||+++++|++++..++++|++++.+... .....|.+.+....+ +.....|++..+++++...
T Consensus 271 aGd~v~l~l~~i~~~~i~~G~vl~~~~~~-~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~ 338 (394)
T PRK12736 271 AGDNVGVLLRGVDRDEVERGQVLAKPGSI-KPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDV 338 (394)
T ss_pred CCCEEEEEECCCcHHhCCcceEEecCCCC-CcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeE
Confidence 99999999999988999999999987533 345778888876654 3456678888777666543
No 12
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.89 E-value=1.2e-22 Score=174.56 Aligned_cols=141 Identities=34% Similarity=0.509 Sum_probs=124.2
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|++ +++|.+..++||||+|+++|++++.|++++|+|++|.+++||+|.++|++. .++|++|+++++++++|.
T Consensus 215 tL~~~l~~-~~~~~~~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~--~~~VksI~~~~~~~~~a~ 291 (446)
T PTZ00141 215 TLLEALDT-LEPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGV--TTEVKSVEMHHEQLAEAV 291 (446)
T ss_pred HHHHHHhC-CCCCCcCCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCc--EEEEEEEEecCcccCEEC
Confidence 59999998 677888889999999999999999999999999999999999999999974 899999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccc-hhhhhhhhcccccccccchhhcccceEEeEeEEEeee
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPV-LADKKLAKVKQYADIDNAPEEKARGITINVAHVEYAT 145 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~-~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~ 145 (211)
|||+|+++|++++..+++||++++.+. .+......|.+.+....++....+|++..+++++...
T Consensus 292 aG~~v~i~L~~i~~~~v~rG~vl~~~~~~p~~~~~~f~a~i~~l~~~~~i~~G~~~vl~~~t~~~ 356 (446)
T PTZ00141 292 PGDNVGFNVKNVSVKDIKRGYVASDSKNDPAKECADFTAQVIVLNHPGQIKNGYTPVLDCHTAHI 356 (446)
T ss_pred CCCEEEEEECCCCHHHcCCceEEecCCCCCCccceEEEEEEEEECCCCccCCCCeEEEEEeceEE
Confidence 999999999999999999999999864 4445677899988777777777888877766665543
No 13
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.89 E-value=8.6e-23 Score=138.63 Aligned_cols=88 Identities=39% Similarity=0.676 Sum_probs=83.7
Q ss_pred CCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceecccCceehhccCCCcccc
Q psy9646 19 DKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEV 98 (211)
Q Consensus 19 ~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v 98 (211)
++||||||+++|++++.|++++|+|++|.+++||++.++|++. .++|++|+++++++++|.+||+++++|++++..++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~--~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v 79 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGV--TGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDI 79 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCc--EEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHc
Confidence 5799999999999999999999999999999999999999974 89999999999999999999999999999999999
Q ss_pred cccccccccc
Q psy9646 99 NRGLIMAKPV 108 (211)
Q Consensus 99 ~~G~ii~~~~ 108 (211)
++|++++++.
T Consensus 80 ~~G~vl~~~~ 89 (91)
T cd03693 80 KRGDVAGDSK 89 (91)
T ss_pred CCcCEEccCC
Confidence 9999999764
No 14
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.89 E-value=3.2e-22 Score=169.90 Aligned_cols=151 Identities=43% Similarity=0.683 Sum_probs=123.5
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+||++|++.+|+|.++.++||||+|+++|+++|.|++++|+|++|.+++||+|.++|.+...+++|++|+++++++++|.
T Consensus 191 ~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~ 270 (394)
T TIGR00485 191 ELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGR 270 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEEC
Confidence 68899999777788889999999999999999999999999999999999999999853335789999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccc-----hhhcccceEEeEeEEEeeeCCceeEeec
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNA-----PEEKARGITINVAHVEYATENRHYSHTD 154 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~-----~~e~~rg~tv~~~~~~~~~~~~~~~~iD 154 (211)
+||+++++|++++..++++|++++++.. ......|.+.+....+ +....+|++..+++++.... .++.+++
T Consensus 271 aGd~v~l~l~~i~~~~i~rG~vl~~~~~-~~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~-~~i~~~~ 346 (394)
T TIGR00485 271 AGDNVGLLLRGIKREEIERGMVLAKPGS-IKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVT-GSITLPE 346 (394)
T ss_pred CCCEEEEEeCCccHHHCCccEEEecCCC-CCcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEE-EEEEecC
Confidence 9999999999988889999999998753 3345778887765554 34556777777666555432 3444433
No 15
>CHL00071 tufA elongation factor Tu
Probab=99.88 E-value=3.4e-22 Score=170.44 Aligned_cols=150 Identities=38% Similarity=0.616 Sum_probs=124.5
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|++.+|+|.++.++||||+|+++|++++.|++++|+|++|.+++||+|.++|.+....++|++|+++++++++|.
T Consensus 201 ~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~ 280 (409)
T CHL00071 201 NLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGL 280 (409)
T ss_pred HHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEEC
Confidence 68999999887788889999999999999999999999999999999999999998753335789999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccc-----hhhcccceEEeEeEEEeeeCCceeEee
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNA-----PEEKARGITINVAHVEYATENRHYSHT 153 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~-----~~e~~rg~tv~~~~~~~~~~~~~~~~i 153 (211)
|||+|+++|++++..++++|++++++.. ......|.+.+....+ +.....|++..+++++.... .++..+
T Consensus 281 aGd~v~i~l~~i~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~-~~i~~i 355 (409)
T CHL00071 281 AGDNVGILLRGIQKEDIERGMVLAKPGT-ITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVT-GKIESF 355 (409)
T ss_pred CCceeEEEEcCCCHHHcCCeEEEecCCC-CCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEE-EEEEEE
Confidence 9999999999988899999999998753 3456788888865554 34566678777766655543 234433
No 16
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.87 E-value=6.3e-22 Score=132.17 Aligned_cols=83 Identities=28% Similarity=0.477 Sum_probs=79.1
Q ss_pred CeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceecccCceehhccCCCcccccc
Q psy9646 21 PFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNR 100 (211)
Q Consensus 21 p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~~ 100 (211)
||||||+++|+++ .|++++|+|++|.+++||+|.++|++. .++|++|+++++++++|.|||+++++|++++..++++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~--~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~ 77 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKE--SVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISP 77 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCc--EEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCC
Confidence 7999999999999 999999999999999999999999974 8999999999999999999999999999999999999
Q ss_pred cccccc
Q psy9646 101 GLIMAK 106 (211)
Q Consensus 101 G~ii~~ 106 (211)
|+++++
T Consensus 78 G~vl~~ 83 (83)
T cd03698 78 GDVLCS 83 (83)
T ss_pred CCEEeC
Confidence 999873
No 17
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=4.1e-22 Score=164.25 Aligned_cols=105 Identities=42% Similarity=0.658 Sum_probs=98.7
Q ss_pred cchhhhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCC--
Q psy9646 107 PVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDG-- 184 (211)
Q Consensus 107 ~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~-- 184 (211)
..+...++.+|...+.+|+.+.|+.||.|++.++..|+++.+.++++|||||++|+++|+.|+++||+++|||||..+
T Consensus 44 ~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~ef 123 (428)
T COG5256 44 KEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEF 123 (428)
T ss_pred HHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCcc
Confidence 344456778888888899999999999999999999999999999999999999999999999999999999999998
Q ss_pred -----CCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 185 -----AMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 185 -----~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.+|+++|+.+++.+|+.++|+++|||
T Consensus 124 E~g~~~~gQtrEH~~La~tlGi~~lIVavNKM 155 (428)
T COG5256 124 EAGFGVGGQTREHAFLARTLGIKQLIVAVNKM 155 (428)
T ss_pred ccccccCCchhHHHHHHHhcCCceEEEEEEcc
Confidence 789999999999999999999999997
No 18
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.87 E-value=2.3e-21 Score=158.09 Aligned_cols=143 Identities=25% Similarity=0.444 Sum_probs=128.1
Q ss_pred ChHHHHHhhhCCCC-CCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeec--CceeeEEEEEEEecceec
Q psy9646 1 MELLNQIDTYIPQP-VRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGY--GRQFKTTVTGIEMFHKIL 77 (211)
Q Consensus 1 ~~ll~~l~~~i~~p-~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~--~~~~~~~v~~i~~~~~~~ 77 (211)
|+||+.+.+++|+. .++.++||+|+|+.+|.+.|.|+|+.|+|.+|.+..||+|++.|. +++..++|+||++++-.+
T Consensus 327 ldlL~e~f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rv 406 (527)
T COG5258 327 LDLLDEFFLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRV 406 (527)
T ss_pred HHHHHHHHHhCCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEe
Confidence 46788887877643 235678999999999999999999999999999999999999775 568899999999999999
Q ss_pred ceecccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEee
Q psy9646 78 DEAQAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYA 144 (211)
Q Consensus 78 ~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~ 144 (211)
++|.||.++++.++++.+++++||++++.. .+++....|.+.++...||.-+..||.-.+++.+..
T Consensus 407 dsa~aG~iig~Al~gv~~e~lerGMVl~~~-~~pkaVref~AeV~vl~HPT~I~aGye~v~H~etI~ 472 (527)
T COG5258 407 DSAKAGSIIGIALKGVEKEELERGMVLSAG-ADPKAVREFDAEVLVLRHPTTIRAGYEPVFHYETIR 472 (527)
T ss_pred ccccCCcEEEEEecccCHHHHhcceEecCC-CCchhhheecceEEEEeCCcEEecCceeeeEeeEee
Confidence 999999999999999999999999999987 678888999999999999999999998887776554
No 19
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.86 E-value=3.8e-21 Score=128.04 Aligned_cols=82 Identities=26% Similarity=0.436 Sum_probs=77.3
Q ss_pred CeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceecccCceehhccCCCcccccc
Q psy9646 21 PFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNR 100 (211)
Q Consensus 21 p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~~ 100 (211)
||||||+++|+.. |++++|||++|.+++||++.++|++. .++|++|+++++++++|.+||+++++|++++..++++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~--~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~ 76 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKT--QVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISP 76 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCc--EEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCC
Confidence 7999999999864 89999999999999999999999974 8999999999999999999999999999999999999
Q ss_pred cccccc
Q psy9646 101 GLIMAK 106 (211)
Q Consensus 101 G~ii~~ 106 (211)
|+++++
T Consensus 77 G~vl~~ 82 (82)
T cd04089 77 GFVLCS 82 (82)
T ss_pred CCEEeC
Confidence 999863
No 20
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.86 E-value=3.3e-21 Score=129.70 Aligned_cols=85 Identities=24% Similarity=0.411 Sum_probs=80.0
Q ss_pred eeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeec--CceeeEEEEEEEecceecceecccCceehhccCCCccccc
Q psy9646 22 FYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGY--GRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVN 99 (211)
Q Consensus 22 ~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~--~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~ 99 (211)
|+|||+++|++++.|++++|||++|.+++||++.++|+ +++..++|++|+++++++++|.|||+++++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 68999999999999999999999999999999999998 4446899999999999999999999999999999999999
Q ss_pred ccccccc
Q psy9646 100 RGLIMAK 106 (211)
Q Consensus 100 ~G~ii~~ 106 (211)
+|+++++
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999874
No 21
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.85 E-value=1.9e-20 Score=160.72 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=125.0
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecC--------CcEEEEEEEEEEEEecCCEEEEeecCc-------e----
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPG--------RGTVVTGRLERGIVKKGMECEFTGYGR-------Q---- 62 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~--------~G~v~~G~v~~G~i~~g~~v~i~p~~~-------~---- 62 (211)
+|+++|++.+|+|.++.++||||+|+++|.+.+ .|+|++|+|.+|.+++||++.+.|++. +
T Consensus 223 ~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~ 302 (460)
T PTZ00327 223 VVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRP 302 (460)
T ss_pred HHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCcccccc
Confidence 588999977888888899999999999998864 799999999999999999999999741 1
Q ss_pred eeEEEEEEEecceecceecccCceehhcc---CCCcccccccccccccchhhhhhhhcccccccccc-------------
Q psy9646 63 FKTTVTGIEMFHKILDEAQAGDQLGALVK---GMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNA------------- 126 (211)
Q Consensus 63 ~~~~v~~i~~~~~~~~~a~~G~~v~~~l~---~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~------------- 126 (211)
..++|++|+++++++++|.|||+++++|+ +++..++.||++++.+...++....|.+.+....+
T Consensus 303 ~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~~~~~~~ 382 (460)
T PTZ00327 303 IRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQDGKKAT 382 (460)
T ss_pred ceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEeccccccccccccccc
Confidence 35899999999999999999999999987 67788999999999876666656678777754433
Q ss_pred -hhhcccceEEeEeEEEeeeCCceeEeecCC
Q psy9646 127 -PEEKARGITINVAHVEYATENRHYSHTDCP 156 (211)
Q Consensus 127 -~~e~~rg~tv~~~~~~~~~~~~~~~~iDtP 156 (211)
+.....++.+.+++++.... ..+..+|..
T Consensus 383 ~~~~l~~g~~~~l~~gt~~~~-~~i~~i~~~ 412 (460)
T PTZ00327 383 KVAKLKKGESLMINIGSTTTG-GRVVGIKDD 412 (460)
T ss_pred CCcccCCCCEEEEEecccEEE-EEEEEeCCC
Confidence 14567778888777766644 355555543
No 22
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.84 E-value=3.7e-21 Score=129.54 Aligned_cols=86 Identities=62% Similarity=1.116 Sum_probs=80.1
Q ss_pred eeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceecccCceehhccCCCccccccc
Q psy9646 22 FYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRG 101 (211)
Q Consensus 22 ~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~~G 101 (211)
|||||+++|++++.|++++|+|++|.+++||++.++|.+...+++|++|+++++++++|.|||+|+++|++.+..+++||
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 79999999999999999999999999999999999986433578999999999999999999999999999999999999
Q ss_pred cccccc
Q psy9646 102 LIMAKP 107 (211)
Q Consensus 102 ~ii~~~ 107 (211)
++++++
T Consensus 81 ~vl~~~ 86 (87)
T cd03697 81 MVLAKP 86 (87)
T ss_pred cEEecC
Confidence 999864
No 23
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.84 E-value=2.2e-20 Score=159.27 Aligned_cols=152 Identities=22% Similarity=0.303 Sum_probs=123.2
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecC--------CcEEEEEEEEEEEEecCCEEEEeecCc----------ee
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPG--------RGTVVTGRLERGIVKKGMECEFTGYGR----------QF 63 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~--------~G~v~~G~v~~G~i~~g~~v~i~p~~~----------~~ 63 (211)
+|++.|.+.++.|.++.++||||+|+++|++++ +|+|++|+|++|.+++||.|.++|+++ ..
T Consensus 191 ~L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~ 270 (411)
T PRK04000 191 ALIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPI 270 (411)
T ss_pred HHHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccc
Confidence 578899987887888889999999999998765 567999999999999999999999852 12
Q ss_pred eEEEEEEEecceecceecccCceehhcc---CCCcccccccccccccchhhhhhhhcccccccccc---------hhhcc
Q psy9646 64 KTTVTGIEMFHKILDEAQAGDQLGALVK---GMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNA---------PEEKA 131 (211)
Q Consensus 64 ~~~v~~i~~~~~~~~~a~~G~~v~~~l~---~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~---------~~e~~ 131 (211)
.++|++|+++++++++|.|||+|+++|+ +++..++++|++++.+..+++....|.+.+....+ +....
T Consensus 271 ~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~ 350 (411)
T PRK04000 271 TTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIK 350 (411)
T ss_pred eEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCC
Confidence 5799999999999999999999999986 67778999999999987776667788888765444 45677
Q ss_pred cceEEeEeEEEeeeCCceeEeec
Q psy9646 132 RGITINVAHVEYATENRHYSHTD 154 (211)
Q Consensus 132 rg~tv~~~~~~~~~~~~~~~~iD 154 (211)
.|+...+++++..... ++..+|
T Consensus 351 ~g~~~~l~~~t~~~~~-~i~~i~ 372 (411)
T PRK04000 351 TGEPLMLNVGTATTVG-VVTSAR 372 (411)
T ss_pred CCCEEEEEEeccEEEE-EEEEcC
Confidence 7777777666655432 344443
No 24
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.83 E-value=2.9e-20 Score=124.14 Aligned_cols=82 Identities=34% Similarity=0.630 Sum_probs=78.2
Q ss_pred eeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceecccCceehhccCCCccccccc
Q psy9646 22 FYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRG 101 (211)
Q Consensus 22 ~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~~G 101 (211)
|||||+++|++++.|++++|+|++|.+++|+++.++|++. .++|++|+.+++++++|.|||+++++|++.+..++++|
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~--~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G 78 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGE--ETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERG 78 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCc--eEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCc
Confidence 7999999999999999999999999999999999999864 89999999999999999999999999999888899999
Q ss_pred cccc
Q psy9646 102 LIMA 105 (211)
Q Consensus 102 ~ii~ 105 (211)
++++
T Consensus 79 ~vl~ 82 (83)
T cd03696 79 DVLS 82 (83)
T ss_pred cEEc
Confidence 9886
No 25
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.83 E-value=6.2e-20 Score=156.45 Aligned_cols=144 Identities=24% Similarity=0.342 Sum_probs=118.0
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecC--------CcEEEEEEEEEEEEecCCEEEEeecCc----------ee
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPG--------RGTVVTGRLERGIVKKGMECEFTGYGR----------QF 63 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~--------~G~v~~G~v~~G~i~~g~~v~i~p~~~----------~~ 63 (211)
+|+++|++.++.|.++.++||+|||+++|++++ +|+|++|+|++|.+++||++.++|++. +.
T Consensus 186 ~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~ 265 (406)
T TIGR03680 186 ALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPI 265 (406)
T ss_pred HHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCcccccccccccccc
Confidence 578999987787888889999999999998765 577999999999999999999999852 12
Q ss_pred eEEEEEEEecceecceecccCceehhcc---CCCcccccccccccccchhhhhhhhcccccccccc---------hhhcc
Q psy9646 64 KTTVTGIEMFHKILDEAQAGDQLGALVK---GMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNA---------PEEKA 131 (211)
Q Consensus 64 ~~~v~~i~~~~~~~~~a~~G~~v~~~l~---~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~---------~~e~~ 131 (211)
.++|++|+++++++++|.+||+|+++|+ +++..++.+|++++.+...+.....|.+.+....+ +....
T Consensus 266 ~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~ 345 (406)
T TIGR03680 266 YTEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIK 345 (406)
T ss_pred ceEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCC
Confidence 5799999999999999999999999884 67789999999999987666666777776654332 35567
Q ss_pred cceEEeEeEEEeee
Q psy9646 132 RGITINVAHVEYAT 145 (211)
Q Consensus 132 rg~tv~~~~~~~~~ 145 (211)
.|+...+++++...
T Consensus 346 ~g~~~~l~~gt~~~ 359 (406)
T TIGR03680 346 TGEVLMLNVGTATT 359 (406)
T ss_pred CCCEEEEEEccceE
Confidence 77777776665543
No 26
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.3e-20 Score=147.56 Aligned_cols=97 Identities=78% Similarity=1.220 Sum_probs=91.3
Q ss_pred hhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHH
Q psy9646 115 AKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLL 194 (211)
Q Consensus 115 ~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~ 194 (211)
..+..+-..|+.|.|+.||+|++.++..|++.+.++.++|+|||.||+++|+.|.+++|++|+||.|.+|+++||++|+.
T Consensus 42 ~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL 121 (394)
T COG0050 42 AEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 121 (394)
T ss_pred ccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh
Confidence 34455556889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEEeCC
Q psy9646 195 LAKQIGVTNIVVFINKF 211 (211)
Q Consensus 195 ~~~~~~~~~~i~~inK~ 211 (211)
+++..|+|.+++++||+
T Consensus 122 larqvGvp~ivvflnK~ 138 (394)
T COG0050 122 LARQVGVPYIVVFLNKV 138 (394)
T ss_pred hhhhcCCcEEEEEEecc
Confidence 99999999999999996
No 27
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.81 E-value=1.4e-19 Score=120.03 Aligned_cols=81 Identities=26% Similarity=0.378 Sum_probs=75.3
Q ss_pred eeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceecccCceehhccCCCccccccc
Q psy9646 22 FYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRG 101 (211)
Q Consensus 22 ~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~~G 101 (211)
|||||+++|+.++.|+.++|||++|.+++||++.++|.+. .++|++|+++++++++|.|||+++++|+ +..++++|
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~--~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G 76 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGK--TSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRG 76 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCC--eEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCC
Confidence 7999999999888888899999999999999999999974 8999999999999999999999999998 47789999
Q ss_pred ccccc
Q psy9646 102 LIMAK 106 (211)
Q Consensus 102 ~ii~~ 106 (211)
+++++
T Consensus 77 ~vl~~ 81 (81)
T cd03695 77 DVIVA 81 (81)
T ss_pred CEEeC
Confidence 99873
No 28
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.7e-19 Score=149.86 Aligned_cols=106 Identities=30% Similarity=0.517 Sum_probs=95.6
Q ss_pred HHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceecc
Q psy9646 3 LLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQA 82 (211)
Q Consensus 3 ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~~ 82 (211)
|-+.|.+....+.++.++|||++|++.|.++|.|||++|++.+|.+++||++++.|.++ .++|+||+.+++++++|.|
T Consensus 153 Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k--~v~VRsIq~~d~d~~~a~A 230 (447)
T COG3276 153 LKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINK--EVRVRSIQAHDVDVEEAKA 230 (447)
T ss_pred HHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCC--eEEEEeeeecCcchhhccc
Confidence 44455552224688999999999999999999999999999999999999999999975 9999999999999999999
Q ss_pred cCceehhccCCCcccccccccccccchh
Q psy9646 83 GDQLGALVKGMKRDEVNRGLIMAKPVLA 110 (211)
Q Consensus 83 G~~v~~~l~~~~~~~v~~G~ii~~~~~~ 110 (211)
|++|+++|++++.+++.||++++.+...
T Consensus 231 G~RVgLaL~~v~~eei~RG~~L~~~~~~ 258 (447)
T COG3276 231 GQRVGLALKGVEKEEIERGDWLLKPEPL 258 (447)
T ss_pred cceeeeecCCCCHHHhhcccEeccCCCC
Confidence 9999999999999999999999987644
No 29
>KOG0460|consensus
Probab=99.81 E-value=7.8e-20 Score=147.10 Aligned_cols=100 Identities=80% Similarity=1.202 Sum_probs=93.8
Q ss_pred hhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHH
Q psy9646 112 KKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTRE 191 (211)
Q Consensus 112 ~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~ 191 (211)
.+..++..+--+|+.|.|+.||+|++..+..|++...++.-+|+|||.||+++|+.|.++.|++++||.|.+|.++||++
T Consensus 81 ~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrE 160 (449)
T KOG0460|consen 81 KGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTRE 160 (449)
T ss_pred ccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHH
Confidence 34455666666899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEEeCC
Q psy9646 192 HLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 192 ~~~~~~~~~~~~~i~~inK~ 211 (211)
|+.+++..|++++++++||+
T Consensus 161 HlLLArQVGV~~ivvfiNKv 180 (449)
T KOG0460|consen 161 HLLLARQVGVKHIVVFINKV 180 (449)
T ss_pred HHHHHHHcCCceEEEEEecc
Confidence 99999999999999999995
No 30
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=5.4e-19 Score=156.94 Aligned_cols=136 Identities=21% Similarity=0.337 Sum_probs=108.5
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|.+ ++.|.+..++||||+|+++|.++|.|+|++|+|.+|++++||++.+.|.+. .++|++|+++++++++|.
T Consensus 156 ~L~~~L~~-~~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~--~~~VrsIq~~~~~v~~a~ 232 (614)
T PRK10512 156 ALREHLLQ-LPEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNK--PMRVRGLHAQNQPTEQAQ 232 (614)
T ss_pred HHHHHHHH-hhccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCCC--cEEEEEEecCCcCCCEEe
Confidence 57888888 455666788999999999999999999999999999999999999999864 789999999999999999
Q ss_pred ccCceehhccC-CCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEee
Q psy9646 82 AGDQLGALVKG-MKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYA 144 (211)
Q Consensus 82 ~G~~v~~~l~~-~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~ 144 (211)
|||+++++|++ ++..+++||++++.+... .....+ ............+..+.+++++.+
T Consensus 233 aG~rval~l~g~~~~~~i~rGdvl~~~~~~-~~~~~~---~~~l~~~~~l~~~~~~~~~~gt~~ 292 (614)
T PRK10512 233 AGQRIALNIAGDAEKEQINRGDWLLADAPP-EPFTRV---IVELQTHTPLTQWQPLHIHHAASH 292 (614)
T ss_pred CCCeEEEEecCCCChhhCCCcCEEeCCCCC-ccceeE---EEEEcCCccCCCCCEEEEEEcccE
Confidence 99999999997 888999999999976422 222222 122222334455667666655544
No 31
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.79 E-value=7.3e-19 Score=152.19 Aligned_cols=138 Identities=20% Similarity=0.220 Sum_probs=113.3
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|+. +++|.+..++||||||+++++.......++|+|++|.+++||+|.++|++. .++|++|++++.++++|.
T Consensus 227 tLl~~L~~-i~~~~~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~--~~~VksI~~~~~~v~~A~ 303 (474)
T PRK05124 227 TLLEVLET-VDIQRVVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGK--ESNVARIVTFDGDLEEAF 303 (474)
T ss_pred hHHHHHhh-cCCCCCCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCc--eEEEEEEEEcCccccCcC
Confidence 58898887 777888889999999999987654333378999999999999999999975 899999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeee
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYAT 145 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~ 145 (211)
+||+|+++|++ ..++++|++++.+..++.....|.+.+.... +.....|+...++.++...
T Consensus 304 aG~~V~l~L~~--~~~i~rG~VL~~~~~~~~~~~~f~a~i~~l~-~~~i~~G~~~~l~~gt~~~ 364 (474)
T PRK05124 304 AGEAITLVLED--EIDISRGDLLVAADEALQAVQHASADVVWMA-EQPLQPGQSYDIKIAGKKT 364 (474)
T ss_pred CCCEEEEEeCC--ccccCCccEEECCCCCCccceEEEEEEEEeC-CcccCCCCeEEEEeCCCEE
Confidence 99999999984 5789999999988766666778888776444 3456667777766555443
No 32
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.79 E-value=7.5e-19 Score=149.74 Aligned_cols=139 Identities=19% Similarity=0.188 Sum_probs=115.5
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|++ +++|.+..++||||||+++|+....+..++|+|++|.+++||+|.++|++. .++|++|+++++++++|.
T Consensus 199 tL~~~L~~-~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~--~~~VksI~~~~~~~~~a~ 275 (406)
T TIGR02034 199 TLLEILET-VEVERDAQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGR--SSRVARIVTFDGDLEQAR 275 (406)
T ss_pred HHHHHHHh-cCCCCCcCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCc--EEEEEEEEECCcccCEeC
Confidence 58899998 677888889999999999997654444489999999999999999999874 899999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeeeC
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATE 146 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~ 146 (211)
|||+|+++|++ ..+++||++++.+..++.....|.+.+..... .....|+...++.++.+..
T Consensus 276 ~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~~~~~f~a~i~~l~~-~~i~~g~~~~l~~gt~~~~ 337 (406)
T TIGR02034 276 AGQAVTLTLDD--EIDISRGDLLAAADSAPEVADQFAATLVWMAE-EPLLPGRSYDLKLGTRKVR 337 (406)
T ss_pred CCCEEEEEECC--ccccCCccEEEcCCCCCCcceEEEEEEEEeCh-hhcCCCCEEEEEeCCCEEE
Confidence 99999999984 57899999999987766667888887754443 4567788888776665543
No 33
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.79 E-value=5.1e-19 Score=143.10 Aligned_cols=136 Identities=20% Similarity=0.231 Sum_probs=119.9
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+||+.|++ ++.......+||||||+++.+.+.-.+.+.|+|.+|.+++||+|.++|+|. .++|++|..++.++.+|.
T Consensus 205 tLLe~LE~-v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~--~s~V~~Ivt~dg~~~~A~ 281 (431)
T COG2895 205 TLLEILET-VEIADDRSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGK--TSRVKRIVTFDGELAQAS 281 (431)
T ss_pred cHHHHHhh-ccccccccccceeeceEEecCCCCcccccceeeeccceecCCeEEEccCCC--eeeEEEEeccCCchhhcc
Confidence 68899998 666555667889999999999876556699999999999999999999986 899999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhccccc-ccccchhhcccceEEeEeEEE
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYA-DIDNAPEEKARGITINVAHVE 142 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i-~~~~~~~e~~rg~tv~~~~~~ 142 (211)
+|+.|++.|. ++.+++||++++....++.....|.+.+ |++..+.+.+|.|-++.....
T Consensus 282 aG~aVtl~L~--deidisRGd~i~~~~~~~~~~~~f~A~vvWm~~~pl~pGr~Y~lK~~t~~ 341 (431)
T COG2895 282 AGEAVTLVLA--DEIDISRGDLIVAADAPPAVADAFDADVVWMDEEPLLPGRSYDLKIATRT 341 (431)
T ss_pred CCceEEEEEc--ceeecccCcEEEccCCCcchhhhcceeEEEecCCCCCCCceEEEEecceE
Confidence 9999999998 7899999999999988888777877665 799999999999888876544
No 34
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.79 E-value=4.5e-19 Score=152.45 Aligned_cols=99 Identities=48% Similarity=0.665 Sum_probs=91.6
Q ss_pred hhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC------
Q psy9646 113 KLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM------ 186 (211)
Q Consensus 113 ~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~------ 186 (211)
++.++.+.+.+|..+.|+.||+|+++++..+++++++++|+|||||.+|+.++..+++.+|++++|||+.+|++
T Consensus 50 ~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~ 129 (446)
T PTZ00141 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISK 129 (446)
T ss_pred CCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCC
Confidence 33455556679999999999999999999999999999999999999999999999999999999999999984
Q ss_pred -cchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 187 -PQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 187 -~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+++|+.++..+|+|++|+++|||
T Consensus 130 ~~qT~eh~~~~~~~gi~~iiv~vNKm 155 (446)
T PTZ00141 130 DGQTREHALLAFTLGVKQMIVCINKM 155 (446)
T ss_pred CccHHHHHHHHHHcCCCeEEEEEEcc
Confidence 7999999999999999888999997
No 35
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=9e-19 Score=135.16 Aligned_cols=91 Identities=80% Similarity=1.237 Sum_probs=86.5
Q ss_pred cccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG 200 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~ 200 (211)
..+|..+.|+.||+|++.+...+++++.+++|+|||||++|+.++..++..+|++++|+|+.+|+.+++++++..+...+
T Consensus 38 ~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~ 117 (195)
T cd01884 38 DEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVG 117 (195)
T ss_pred ccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
+|++|+++||+
T Consensus 118 ~~~iIvviNK~ 128 (195)
T cd01884 118 VPYIVVFLNKA 128 (195)
T ss_pred CCcEEEEEeCC
Confidence 98788899997
No 36
>KOG0459|consensus
Probab=99.77 E-value=6.9e-19 Score=144.36 Aligned_cols=149 Identities=23% Similarity=0.289 Sum_probs=131.4
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
.+|+.|++ +|-.+|..++||+|||.+-|+ ..||++.|++++|.++.|+.+.++|.+. .+.|.+|...+.+++.+.
T Consensus 289 ~fl~~ld~-l~~~~R~~~GP~~~pI~~Kyk--dmGTvv~GKvEsGsi~kg~~lvvMPnk~--~veV~~I~~ddvE~~~~~ 363 (501)
T KOG0459|consen 289 IFLEYLDE-LPHLERILNGPIRCPVANKYK--DMGTVVGGKVESGSIKKGQQLVVMPNKT--NVEVLGIYSDDVETDRVA 363 (501)
T ss_pred ccceehhc-cCcccccCCCCEEeehhhhcc--ccceEEEEEecccceecCCeEEEccCCc--ceEEEEEecccceeeecc
Confidence 36788888 777889999999999999997 6779999999999999999999999975 889999999988999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeeeC--CceeEeecC
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATE--NRHYSHTDC 155 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~--~~~~~~iDt 155 (211)
+||++.+.|++++.+++..|.++|++..+.+....|.+.+.+..++.-+..||+--++.++.--+ -.-+..+|.
T Consensus 364 pGenvk~rlkgieeedi~~GfiL~~~~n~~~s~~~F~aqi~IlE~~sIi~~GY~~VlHIht~ieEv~i~li~~idk 439 (501)
T KOG0459|consen 364 PGENVKLRLKGIEEEDISPGFILCSPNNPCKSGRTFDAQIVILEHKSIICAGYSCVLHIHTAVEEVEIKLIHLIDK 439 (501)
T ss_pred CCcceEEEecccchhhccCceEEecCCCccccccEEEEEEEEEecCceeccCcceEeeeeeehhheeeeeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999988877664311 133445565
No 37
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.77 E-value=1.1e-18 Score=148.67 Aligned_cols=96 Identities=36% Similarity=0.616 Sum_probs=91.8
Q ss_pred hcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHH
Q psy9646 116 KVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLL 195 (211)
Q Consensus 116 ~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~ 195 (211)
+|.+.+.+|..+.|+.||+|+++++..+++++.+++|+|||||++|.+++..++..+|++++|+|+.+|+.+|+++|+.+
T Consensus 48 ~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~ 127 (406)
T TIGR02034 48 EIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYI 127 (406)
T ss_pred ceeeeeeccCChHHhcCCcCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHH
Confidence 57777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEEeCC
Q psy9646 196 AKQIGVTNIVVFINKF 211 (211)
Q Consensus 196 ~~~~~~~~~i~~inK~ 211 (211)
+...+++++|+++||+
T Consensus 128 ~~~~~~~~iivviNK~ 143 (406)
T TIGR02034 128 ASLLGIRHVVLAVNKM 143 (406)
T ss_pred HHHcCCCcEEEEEEec
Confidence 9999998888999996
No 38
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.77 E-value=7e-19 Score=142.33 Aligned_cols=95 Identities=40% Similarity=0.635 Sum_probs=90.5
Q ss_pred cccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHH
Q psy9646 117 VKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLA 196 (211)
Q Consensus 117 f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~ 196 (211)
+...+..|-+..|+++|+|++++|.+|.++..++++.|||||+.|.++|..|.+-||+++++|||.+|+..|+++|..++
T Consensus 55 ~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~ 134 (431)
T COG2895 55 IDLALLVDGLEAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIA 134 (431)
T ss_pred cchhhhhhhhHHHHhcCceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHH
Confidence 33445689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEEEeCC
Q psy9646 197 KQIGVTNIVVFINKF 211 (211)
Q Consensus 197 ~~~~~~~~i~~inK~ 211 (211)
.-+|++++++++|||
T Consensus 135 sLLGIrhvvvAVNKm 149 (431)
T COG2895 135 SLLGIRHVVVAVNKM 149 (431)
T ss_pred HHhCCcEEEEEEeee
Confidence 999999999999997
No 39
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.76 E-value=7.7e-18 Score=150.90 Aligned_cols=137 Identities=19% Similarity=0.165 Sum_probs=112.0
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|++ +++|.+..++||||||+++|+....+..++|+|++|.+++||+|.++|++. +++|++|+++++++++|.
T Consensus 223 tL~~~l~~-~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~--~~~VksI~~~~~~~~~a~ 299 (632)
T PRK05506 223 SLLEHLET-VEIASDRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGK--TSRVKRIVTPDGDLDEAF 299 (632)
T ss_pred HHHHHHhc-CCCCCCcCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCc--eEEEEEEEECCceeCEEc
Confidence 68899998 677777789999999999998543333478999999999999999999974 899999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEee
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYA 144 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~ 144 (211)
|||+|+++|++ ..++++|++++++..++.....|.+.+.....+ ....|+++.+++++..
T Consensus 300 aG~~v~i~l~~--~~~i~rG~vL~~~~~~~~~~~~f~a~i~~l~~~-~~~~g~~~~l~~gt~~ 359 (632)
T PRK05506 300 AGQAVTLTLAD--EIDISRGDMLARADNRPEVADQFDATVVWMAEE-PLLPGRPYLLKHGTRT 359 (632)
T ss_pred CCCeEEEEecC--ccccCCccEEecCCCCCcceeEEEEEEEEeccc-ccCCCCeEEEEeCCCE
Confidence 99999999984 568999999999876666677788877654433 3446777776655544
No 40
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.76 E-value=2.4e-18 Score=147.96 Aligned_cols=97 Identities=43% Similarity=0.632 Sum_probs=90.2
Q ss_pred hhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-------c
Q psy9646 115 AKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-------P 187 (211)
Q Consensus 115 ~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-------~ 187 (211)
.+|...+.+|..+.|+.||+|+++++..++++++.++|+|||||++|.++|..+++.+|++++|+|+.+|.+ +
T Consensus 52 ~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~ 131 (447)
T PLN00043 52 RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDG 131 (447)
T ss_pred cchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCc
Confidence 456666779999999999999999999999999999999999999999999999999999999999998843 7
Q ss_pred chHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 188 QTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 188 ~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+++|+.++..+|+|++|+++|||
T Consensus 132 qT~eh~~~~~~~gi~~iIV~vNKm 155 (447)
T PLN00043 132 QTREHALLAFTLGVKQMICCCNKM 155 (447)
T ss_pred hHHHHHHHHHHcCCCcEEEEEEcc
Confidence 999999999999999888999997
No 41
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.75 E-value=1e-17 Score=148.33 Aligned_cols=88 Identities=25% Similarity=0.470 Sum_probs=83.0
Q ss_pred CCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceecccCceehhccCCCccc
Q psy9646 18 LDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDE 97 (211)
Q Consensus 18 ~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~ 97 (211)
.++||||||+++|.++|.|+|++|+|.+|++++||++.++|++. .++|++|+.+++++++|.|||+|+++|++++..+
T Consensus 173 ~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~--~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~ 250 (581)
T TIGR00475 173 IQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINH--EVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPES 250 (581)
T ss_pred cCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCCc--eEEEeEEEECCccCCEEECCCEEEEEeCCCCHHH
Confidence 67899999999999999999999999999999999999999974 8999999999999999999999999999999999
Q ss_pred cccccccccc
Q psy9646 98 VNRGLIMAKP 107 (211)
Q Consensus 98 v~~G~ii~~~ 107 (211)
++||.+++.+
T Consensus 251 i~rG~~~~~~ 260 (581)
T TIGR00475 251 LKRGLLILTP 260 (581)
T ss_pred cCCceEEcCC
Confidence 9999766654
No 42
>PLN03127 Elongation factor Tu; Provisional
Probab=99.74 E-value=6.6e-18 Score=145.12 Aligned_cols=90 Identities=72% Similarity=1.208 Sum_probs=86.1
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.+|..+.|+.||+|+++.+..|++++.+++|+|||||++|+.++..++..+|++++|+|+.+|+++|+++|+.++...++
T Consensus 98 ~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gi 177 (447)
T PLN03127 98 EIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV 177 (447)
T ss_pred cccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
|.+|+++||+
T Consensus 178 p~iIvviNKi 187 (447)
T PLN03127 178 PSLVVFLNKV 187 (447)
T ss_pred CeEEEEEEee
Confidence 9777899996
No 43
>KOG0458|consensus
Probab=99.74 E-value=7.5e-18 Score=143.82 Aligned_cols=101 Identities=38% Similarity=0.612 Sum_probs=95.2
Q ss_pred hhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC----
Q psy9646 111 DKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM---- 186 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~---- 186 (211)
..++.+|.+.|.+|..+.|+.||+|.+....+|++..+.++++|+|||.+|+.+|+.|...||+++|||||..+.+
T Consensus 218 ~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gf 297 (603)
T KOG0458|consen 218 NLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGF 297 (603)
T ss_pred hcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhcc
Confidence 3466778888999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred ---cchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 187 ---PQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 187 ---~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+++|+.+++.+|+.++|+++|||
T Consensus 298 d~~gQtrEha~llr~Lgi~qlivaiNKm 325 (603)
T KOG0458|consen 298 DPGGQTREHALLLRSLGISQLIVAINKM 325 (603)
T ss_pred CCCCchHHHHHHHHHcCcceEEEEeecc
Confidence 7999999999999999999999997
No 44
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.73 E-value=8.3e-18 Score=145.67 Aligned_cols=96 Identities=40% Similarity=0.634 Sum_probs=90.5
Q ss_pred hcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHH
Q psy9646 116 KVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLL 195 (211)
Q Consensus 116 ~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~ 195 (211)
+|...+.+|..+.|+.||+|+++++..+++++.+++|+|||||++|.+++..++..+|++++|+|+.+|+.+|+++++.+
T Consensus 75 ~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l 154 (474)
T PRK05124 75 KLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFI 154 (474)
T ss_pred ccchhhhccCChHHhhcCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHH
Confidence 46666779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEEeCC
Q psy9646 196 AKQIGVTNIVVFINKF 211 (211)
Q Consensus 196 ~~~~~~~~~i~~inK~ 211 (211)
+..++++++|+++||+
T Consensus 155 ~~~lg~~~iIvvvNKi 170 (474)
T PRK05124 155 ATLLGIKHLVVAVNKM 170 (474)
T ss_pred HHHhCCCceEEEEEee
Confidence 9999988788999996
No 45
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.73 E-value=6.8e-18 Score=129.61 Aligned_cols=89 Identities=47% Similarity=0.810 Sum_probs=84.6
Q ss_pred ccccchhhcccceEEeEeEEEee--eCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHc
Q psy9646 122 DIDNAPEEKARGITINVAHVEYA--TENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQI 199 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~--~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~ 199 (211)
.++..+.|..+++|++++...+. ...++++|+|||||.+|.+++..++..+|++++|||+.+|+..+++++++.+...
T Consensus 42 ~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~ 121 (188)
T PF00009_consen 42 FLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL 121 (188)
T ss_dssp HHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT
T ss_pred cccccchhhhcccccccccccccccccccceeecccccccceeecccceecccccceeeeeccccccccccccccccccc
Confidence 37889999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCC
Q psy9646 200 GVTNIVVFINKF 211 (211)
Q Consensus 200 ~~~~~i~~inK~ 211 (211)
++| +|+|+||+
T Consensus 122 ~~p-~ivvlNK~ 132 (188)
T PF00009_consen 122 GIP-IIVVLNKM 132 (188)
T ss_dssp T-S-EEEEEETC
T ss_pred ccc-eEEeeeec
Confidence 999 88999997
No 46
>KOG0458|consensus
Probab=99.73 E-value=1.2e-17 Score=142.62 Aligned_cols=143 Identities=22% Similarity=0.335 Sum_probs=129.2
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+||++|++ +.+|.+..++||+|+|.+++..+..|..++|+|++|.+++|+++.++|+.+ .+.|++|.+++++..+|.
T Consensus 387 ~LL~~id~-~~~p~~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e--~~~vk~l~~~~~~~~~a~ 463 (603)
T KOG0458|consen 387 TLLSQIDS-FKIPERPIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSRE--DATVKGLTSNDEPKTWAV 463 (603)
T ss_pred hHHHHHhh-ccCCCCcccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcc--eEEEEeeecCCCcceeEe
Confidence 68999999 677999999999999999999999999999999999999999999999976 899999999999999999
Q ss_pred ccCceehhccCCCccccccccccc-ccchhhhhhhhcccccccccchhhcccceEEeEeEEEeeeCC
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMA-KPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN 147 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~-~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~ 147 (211)
|||+|.+.|.++.++.+..|++++ .+.-+.+....|.+.+.......++.+|+++.++++......
T Consensus 464 AGD~Vsl~L~~i~~n~v~~g~i~~~~~~~~i~~~~~f~~~~~~f~~~~Pi~~g~~l~l~~~~~~~pa 530 (603)
T KOG0458|consen 464 AGDNVSLKLPGILPNLVQVGDIADSGPQFPISKTTRFVARITTFDINLPITKGSPLILHFGSLSEPA 530 (603)
T ss_pred eCCEEEEecCccChhhcccceeeecCCCccccceeEEEEEEEEeeccccccCCcceEEEeccccchh
Confidence 999999999999999999999999 455555666778888888888889999999999888776543
No 47
>PRK12736 elongation factor Tu; Reviewed
Probab=99.72 E-value=1.6e-17 Score=141.17 Aligned_cols=91 Identities=77% Similarity=1.220 Sum_probs=86.6
Q ss_pred cccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG 200 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~ 200 (211)
..+|..+.|+.||+|++++...|++++.+++|+|||||++|+.++..++..+|++++|+|+.+|+.+|+++|+.++...+
T Consensus 48 ~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g 127 (394)
T PRK12736 48 DSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVG 127 (394)
T ss_pred hhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
+|++|+++||+
T Consensus 128 ~~~~IvviNK~ 138 (394)
T PRK12736 128 VPYLVVFLNKV 138 (394)
T ss_pred CCEEEEEEEec
Confidence 99778899996
No 48
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.9e-17 Score=147.69 Aligned_cols=89 Identities=33% Similarity=0.506 Sum_probs=85.9
Q ss_pred ccccchhhcccceEEeEeEEEeeeCC-ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATEN-RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG 200 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~-~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~ 200 (211)
.+|..+.|+.||+|+.++..++.|++ +++++||||||-||..++.++++.+|++++|+||.+|+++|++.+|+++.+.+
T Consensus 49 ~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~ 128 (697)
T COG0480 49 TMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYG 128 (697)
T ss_pred cCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcC
Confidence 58999999999999999999999995 99999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
+|+ |+++|||
T Consensus 129 vp~-i~fiNKm 138 (697)
T COG0480 129 VPR-ILFVNKM 138 (697)
T ss_pred CCe-EEEEECc
Confidence 995 5899997
No 49
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.71 E-value=2.9e-17 Score=139.65 Aligned_cols=95 Identities=78% Similarity=1.236 Sum_probs=87.8
Q ss_pred cccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHH
Q psy9646 117 VKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLA 196 (211)
Q Consensus 117 f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~ 196 (211)
+.....+|..+.|+.||+|+++++..+++++.+++|+|||||++|+.++..++..+|++++|+|+.+|+.+|+++++..+
T Consensus 44 ~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~ 123 (394)
T TIGR00485 44 ARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLA 123 (394)
T ss_pred ccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHH
Confidence 33344589999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEEEeCC
Q psy9646 197 KQIGVTNIVVFINKF 211 (211)
Q Consensus 197 ~~~~~~~~i~~inK~ 211 (211)
...++|++|+++||+
T Consensus 124 ~~~gi~~iIvvvNK~ 138 (394)
T TIGR00485 124 RQVGVPYIVVFLNKC 138 (394)
T ss_pred HHcCCCEEEEEEEec
Confidence 999999777789997
No 50
>CHL00071 tufA elongation factor Tu
Probab=99.71 E-value=3.4e-17 Score=139.79 Aligned_cols=90 Identities=80% Similarity=1.259 Sum_probs=86.0
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.+|..+.|+.||+|+++....|++++.+++|+|||||++|+++++.++..+|++++|+|+.+|+.+|+++++.++...++
T Consensus 49 ~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~ 128 (409)
T CHL00071 49 EIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGV 128 (409)
T ss_pred cccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
|++|+++||+
T Consensus 129 ~~iIvvvNK~ 138 (409)
T CHL00071 129 PNIVVFLNKE 138 (409)
T ss_pred CEEEEEEEcc
Confidence 9788899996
No 51
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=4.1e-17 Score=138.69 Aligned_cols=90 Identities=78% Similarity=1.238 Sum_probs=85.3
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.+|..+.|+.||+|+++++..+++++.+++|+|||||++|+.++..++..+|++++|+|+.+|+.+++++++.++...++
T Consensus 49 ~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~ 128 (396)
T PRK00049 49 QIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128 (396)
T ss_pred hccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
|.+|+++||+
T Consensus 129 p~iiVvvNK~ 138 (396)
T PRK00049 129 PYIVVFLNKC 138 (396)
T ss_pred CEEEEEEeec
Confidence 9666789996
No 52
>PLN03126 Elongation factor Tu; Provisional
Probab=99.71 E-value=4.1e-17 Score=141.03 Aligned_cols=90 Identities=76% Similarity=1.221 Sum_probs=86.2
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.+|..+.|+.||+|+++.+..+++++.+++|+|||||++|++++..++..+|++++|+|+.+|+.+|+++|+.++..+|+
T Consensus 118 ~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi 197 (478)
T PLN03126 118 EIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGV 197 (478)
T ss_pred cccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCC
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
|++|+++||+
T Consensus 198 ~~iIvvvNK~ 207 (478)
T PLN03126 198 PNMVVFLNKQ 207 (478)
T ss_pred CeEEEEEecc
Confidence 9888899997
No 53
>PRK12735 elongation factor Tu; Reviewed
Probab=99.71 E-value=4.2e-17 Score=138.66 Aligned_cols=91 Identities=77% Similarity=1.228 Sum_probs=85.7
Q ss_pred cccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG 200 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~ 200 (211)
..+|..+.|+.||+|++++...+++++.+++|+|||||++|++++..++..+|++++|+|+.+|+.+|+++++.++...+
T Consensus 48 ~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~g 127 (396)
T PRK12735 48 DQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127 (396)
T ss_pred hhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
+|.+|+++||+
T Consensus 128 i~~iivvvNK~ 138 (396)
T PRK12735 128 VPYIVVFLNKC 138 (396)
T ss_pred CCeEEEEEEec
Confidence 99766789996
No 54
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.70 E-value=3.3e-17 Score=136.81 Aligned_cols=91 Identities=37% Similarity=0.485 Sum_probs=86.7
Q ss_pred ccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHc
Q psy9646 120 YADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQI 199 (211)
Q Consensus 120 ~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~ 199 (211)
...||+...|+.||+|+-.......+++..|+++|||||.+|-.++.+.++.+|.++++|||.+|+++||+.+++.+.++
T Consensus 40 ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~ 119 (603)
T COG1217 40 ERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL 119 (603)
T ss_pred hhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHc
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCC
Q psy9646 200 GVTNIVVFINKF 211 (211)
Q Consensus 200 ~~~~~i~~inK~ 211 (211)
|.++| +|+||+
T Consensus 120 gL~PI-VVvNKi 130 (603)
T COG1217 120 GLKPI-VVINKI 130 (603)
T ss_pred CCCcE-EEEeCC
Confidence 99965 899997
No 55
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.69 E-value=7.7e-17 Score=126.58 Aligned_cols=90 Identities=31% Similarity=0.428 Sum_probs=82.2
Q ss_pred cccccchhhcccceEEeEeEEEeeeC----------CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchH
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATE----------NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTR 190 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~----------~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~ 190 (211)
..+|..+.|+.||+|+..+..++.+. +.+++|+|||||++|..++..++..+|++++|+|+.+|+..+++
T Consensus 36 ~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~ 115 (222)
T cd01885 36 RYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE 115 (222)
T ss_pred eeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH
Confidence 45899999999999999887665554 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEEeCC
Q psy9646 191 EHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 191 ~~~~~~~~~~~~~~i~~inK~ 211 (211)
++++.+...++| +|+++||+
T Consensus 116 ~~l~~~~~~~~p-~ilviNKi 135 (222)
T cd01885 116 TVLRQALKERVK-PVLVINKI 135 (222)
T ss_pred HHHHHHHHcCCC-EEEEEECC
Confidence 999999988988 78999997
No 56
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=4.2e-17 Score=135.26 Aligned_cols=87 Identities=28% Similarity=0.470 Sum_probs=83.5
Q ss_pred ccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCe
Q psy9646 124 DNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTN 203 (211)
Q Consensus 124 ~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~ 203 (211)
|=...|++||+++.++...|++.++.++++|||||+||...+++.|..+|.+++|+||.+|+.+||.++++.|+..++|
T Consensus 57 DWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP- 135 (528)
T COG4108 57 DWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP- 135 (528)
T ss_pred HHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCc-
Confidence 4456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCC
Q psy9646 204 IVVFINKF 211 (211)
Q Consensus 204 ~i~~inK~ 211 (211)
|+-++||+
T Consensus 136 I~TFiNKl 143 (528)
T COG4108 136 IFTFINKL 143 (528)
T ss_pred eEEEeecc
Confidence 88899996
No 57
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.69 E-value=9.7e-17 Score=129.68 Aligned_cols=90 Identities=31% Similarity=0.456 Sum_probs=85.4
Q ss_pred cccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG 200 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~ 200 (211)
..+|..+.|+.||+|++++...+++++++++|+|||||.+|..++..++..+|++++|+|+..|+..+++++++.+...+
T Consensus 37 ~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~ 116 (270)
T cd01886 37 ATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYN 116 (270)
T ss_pred cccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
+| +++++||+
T Consensus 117 ~p-~ivviNK~ 126 (270)
T cd01886 117 VP-RIAFVNKM 126 (270)
T ss_pred CC-EEEEEECC
Confidence 99 66899996
No 58
>KOG0463|consensus
Probab=99.67 E-value=1e-16 Score=130.96 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=135.1
Q ss_pred ChHHHHHhhhCCCC-CCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeec--CceeeEEEEEEEecceec
Q psy9646 1 MELLNQIDTYIPQP-VRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGY--GRQFKTTVTGIEMFHKIL 77 (211)
Q Consensus 1 ~~ll~~l~~~i~~p-~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~--~~~~~~~v~~i~~~~~~~ 77 (211)
|+||..+.+.+++. +...+.|..|.|+++|+++|.|+++.|+..+|.|+.+|.+.+.|+ +.+.+..||||++-+-++
T Consensus 346 L~LLkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV 425 (641)
T KOG0463|consen 346 LPLLKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPV 425 (641)
T ss_pred hHHHHHHHhhcCcccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccccc
Confidence 57899999966532 234567999999999999999999999999999999999999886 457789999999988899
Q ss_pred ceecccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEee-------------
Q psy9646 78 DEAQAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYA------------- 144 (211)
Q Consensus 78 ~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~------------- 144 (211)
..+.+|+.+.+.|+.+++.++++|+++.++...+.+++.|.+.+....+|..+..+|..-++.++..
T Consensus 426 ~~VrcGQtASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILVLHHPTTIsprYQAMvHcGSiRQTAtivsM~kdcL 505 (641)
T KOG0463|consen 426 GIVRCGQTASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILVLHHPTTISPRYQAMVHCGSIRQTATIVSMGKDCL 505 (641)
T ss_pred eEEeccchhhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEEEEecCCccCcchhheeeeccccceeeeeecChhhh
Confidence 9999999999999999999999999999999999999999999999999999988887766654432
Q ss_pred -eC---CceeEeecCCc
Q psy9646 145 -TE---NRHYSHTDCPG 157 (211)
Q Consensus 145 -~~---~~~~~~iDtPG 157 (211)
+. .-++.||-+|-
T Consensus 506 RTGDka~V~FrFIkqPE 522 (641)
T KOG0463|consen 506 RTGDKAKVQFRFIKQPE 522 (641)
T ss_pred hcCCcceEEEEEecCcc
Confidence 11 24688888875
No 59
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.66 E-value=1.6e-16 Score=142.44 Aligned_cols=97 Identities=37% Similarity=0.625 Sum_probs=91.1
Q ss_pred hhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHH
Q psy9646 115 AKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLL 194 (211)
Q Consensus 115 ~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~ 194 (211)
.+|...+.+|..+.|+.||+|+++++..+++++.+++|+|||||++|.+++..+++.+|++++|+|+.+|+.+|+++++.
T Consensus 71 ~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~ 150 (632)
T PRK05506 71 DEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF 150 (632)
T ss_pred CcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH
Confidence 45666677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEEeCC
Q psy9646 195 LAKQIGVTNIVVFINKF 211 (211)
Q Consensus 195 ~~~~~~~~~~i~~inK~ 211 (211)
++...+++++|+++||+
T Consensus 151 ~~~~~~~~~iivvvNK~ 167 (632)
T PRK05506 151 IASLLGIRHVVLAVNKM 167 (632)
T ss_pred HHHHhCCCeEEEEEEec
Confidence 99999988788999996
No 60
>KOG0462|consensus
Probab=99.66 E-value=1.4e-16 Score=135.24 Aligned_cols=89 Identities=31% Similarity=0.482 Sum_probs=84.7
Q ss_pred ccccchhhcccceEEeEeEEEeeeCC---ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHH
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATEN---RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQ 198 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~---~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~ 198 (211)
++|+...|++||+|+.....+..+.+ +.+++||||||.||-.++.++++.+|++++||||.+|++.||...+.++.+
T Consensus 96 ~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe 175 (650)
T KOG0462|consen 96 VLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE 175 (650)
T ss_pred hhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH
Confidence 58999999999999999988888877 889999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEeCC
Q psy9646 199 IGVTNIVVFINKF 211 (211)
Q Consensus 199 ~~~~~~i~~inK~ 211 (211)
.|.. +|.|+|||
T Consensus 176 ~~L~-iIpVlNKI 187 (650)
T KOG0462|consen 176 AGLA-IIPVLNKI 187 (650)
T ss_pred cCCe-EEEeeecc
Confidence 9998 88999997
No 61
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.66 E-value=3.3e-16 Score=122.15 Aligned_cols=96 Identities=38% Similarity=0.603 Sum_probs=87.3
Q ss_pred hcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHH
Q psy9646 116 KVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLL 195 (211)
Q Consensus 116 ~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~ 195 (211)
.+.....+|..+.|+.||+|++.....+++++.++.|+|||||.+|..++..++..+|++++|+|+.+++..++++++..
T Consensus 45 ~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~ 124 (208)
T cd04166 45 PLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYI 124 (208)
T ss_pred CcceeeeccCChhhhcCCcCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHH
Confidence 34455668999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHcCCCeEEEEEeCC
Q psy9646 196 AKQIGVTNIVVFINKF 211 (211)
Q Consensus 196 ~~~~~~~~~i~~inK~ 211 (211)
+...+.|++|+++||+
T Consensus 125 ~~~~~~~~iIvviNK~ 140 (208)
T cd04166 125 LSLLGIRHVVVAVNKM 140 (208)
T ss_pred HHHcCCCcEEEEEEch
Confidence 8888877787899996
No 62
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.66 E-value=1.1e-16 Score=137.59 Aligned_cols=105 Identities=30% Similarity=0.459 Sum_probs=87.0
Q ss_pred cchhhhhhhhccc---ccccccchhhcccceEEeEeEEEeee---------------C------------------Ccee
Q psy9646 107 PVLADKKLAKVKQ---YADIDNAPEEKARGITINVAHVEYAT---------------E------------------NRHY 150 (211)
Q Consensus 107 ~~~~~~~~~~f~~---~i~~~~~~~e~~rg~tv~~~~~~~~~---------------~------------------~~~~ 150 (211)
.++..++++.+.. ..+.+.++.|..||+|+++.|..+.. + ..++
T Consensus 40 ~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 119 (460)
T PTZ00327 40 IGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHV 119 (460)
T ss_pred EccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccccccceE
Confidence 3444555555332 33578899999999999998875521 1 2479
Q ss_pred EeecCCcccccHhHHhhhccccceEEEEEeccCC-CCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 151 SHTDCPGHADYIKNMITGTSQMDGAILVVAATDG-AMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 151 ~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~-~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+|||||++|+++|+.|++.+|++++||||.++ +++|+++|+..+..++++++|+++||+
T Consensus 120 ~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKi 181 (460)
T PTZ00327 120 SFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKI 181 (460)
T ss_pred eeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecc
Confidence 9999999999999999999999999999999986 789999999999999999888999997
No 63
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.66 E-value=3.1e-16 Score=134.69 Aligned_cols=99 Identities=48% Similarity=0.815 Sum_probs=90.9
Q ss_pred hhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccC--CCCcchH
Q psy9646 113 KLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATD--GAMPQTR 190 (211)
Q Consensus 113 ~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~--~~~~~~~ 190 (211)
++.++...+.+|..+.|+.||+|+++.+..+++++.++.|+|||||++|.+++..++..+|++++|+|+.+ ++.++++
T Consensus 49 g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~ 128 (425)
T PRK12317 49 GKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTR 128 (425)
T ss_pred CCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchH
Confidence 34446666779999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHHHcCCCeEEEEEeCC
Q psy9646 191 EHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 191 ~~~~~~~~~~~~~~i~~inK~ 211 (211)
+++.++...+++++++++||+
T Consensus 129 ~~~~~~~~~~~~~iivviNK~ 149 (425)
T PRK12317 129 EHVFLARTLGINQLIVAINKM 149 (425)
T ss_pred HHHHHHHHcCCCeEEEEEEcc
Confidence 999999999987788999996
No 64
>KOG0461|consensus
Probab=99.65 E-value=1.4e-16 Score=128.76 Aligned_cols=153 Identities=28% Similarity=0.448 Sum_probs=115.2
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|.++|.+.+-.|.|+.++||.|.|++||.++|.|||.+|+|.+|+++.|+.+.+...++ +.+|||++++++++.+|.
T Consensus 183 eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e--~rkVKslqmf~~~vtsa~ 260 (522)
T KOG0461|consen 183 ELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNE--KRKVKSLQMFKQRVTSAA 260 (522)
T ss_pred HHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccch--hhhhhhHHHHhhhhhhhh
Confidence 578999999989999999999999999999999999999999999999999999877765 778999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhh--hcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCccc
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLA--KVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHA 159 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~--~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~ 159 (211)
+||++++.+..+++.-++||.+.......+.... .+.. +.....+....+.+.+.+.+.++. ..--.|-||.|..
T Consensus 261 ~GdR~g~cVtqFd~klleRgi~~~pg~Lk~~~avl~~vep-I~yfr~~i~sk~K~Hi~VgheTVM--a~~~ff~d~d~~~ 337 (522)
T KOG0461|consen 261 AGDRAGFCVTQFDEKLLERGICGPPGTLKSTKAVLATVEP-IQYFRKSINSKSKIHIAVGHETVM--AECQFFKDTDGTT 337 (522)
T ss_pred cccceeeeeeccCHHHHhccccCCCcccceeeeeeEeecc-hHHHhhhhhhcceEEEEehhhhhh--hheEEeeccCCcc
Confidence 9999999999999999999976654332221110 1111 112233344444455554444332 2334456888843
No 65
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.65 E-value=5.9e-16 Score=121.69 Aligned_cols=96 Identities=44% Similarity=0.660 Sum_probs=86.3
Q ss_pred hcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccC-------CCCcc
Q psy9646 116 KVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATD-------GAMPQ 188 (211)
Q Consensus 116 ~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~-------~~~~~ 188 (211)
.+.+...+|..+.|+.||+|++.....+++.+..++|+|||||.+|..++..++..+|++++|+|+.+ +...+
T Consensus 45 ~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~ 124 (219)
T cd01883 45 SFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQ 124 (219)
T ss_pred chhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccc
Confidence 34444568999999999999999999999999999999999999999999999999999999999988 56678
Q ss_pred hHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 189 TREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 189 ~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.+++..+...+.+++|+++||+
T Consensus 125 ~~~~~~~~~~~~~~~iiivvNK~ 147 (219)
T cd01883 125 TREHALLARTLGVKQLIVAVNKM 147 (219)
T ss_pred hHHHHHHHHHcCCCeEEEEEEcc
Confidence 88888888888877788899996
No 66
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.65 E-value=5.1e-16 Score=138.06 Aligned_cols=104 Identities=36% Similarity=0.544 Sum_probs=89.1
Q ss_pred chhhhhhhhcccccc---cccchhhcccceEEeEeEEEeeeC-CceeEeecCCcccccHhHHhhhccccceEEEEEeccC
Q psy9646 108 VLADKKLAKVKQYAD---IDNAPEEKARGITINVAHVEYATE-NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATD 183 (211)
Q Consensus 108 ~~~~~~~~~f~~~i~---~~~~~~e~~rg~tv~~~~~~~~~~-~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~ 183 (211)
++...|++++...+. ++..+.|..||+|+++.+..+... +..+.|+|||||++|+++|..++..+|++++|+|+.+
T Consensus 7 GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~e 86 (614)
T PRK10512 7 GHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDD 86 (614)
T ss_pred CCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCC
Confidence 444555555544343 577888999999999998888764 5678999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 184 GAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+++|+++|+..+...++|.+|+|+||+
T Consensus 87 g~~~qT~ehl~il~~lgi~~iIVVlNKi 114 (614)
T PRK10512 87 GVMAQTREHLAILQLTGNPMLTVALTKA 114 (614)
T ss_pred CCcHHHHHHHHHHHHcCCCeEEEEEECC
Confidence 9999999999999999999778999997
No 67
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=7.8e-16 Score=128.21 Aligned_cols=90 Identities=41% Similarity=0.646 Sum_probs=87.3
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
..+..+.|.+||+|+++.+.++..++..+.|+|.|||.+|+++|..|+..+|+++|+||+.+|++.|+.+|+..+..+|+
T Consensus 24 ~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi 103 (447)
T COG3276 24 VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGI 103 (447)
T ss_pred ccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
++.|+|+||+
T Consensus 104 ~~giivltk~ 113 (447)
T COG3276 104 KNGIIVLTKA 113 (447)
T ss_pred CceEEEEecc
Confidence 9988999995
No 68
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=8.6e-16 Score=130.79 Aligned_cols=111 Identities=34% Similarity=0.382 Sum_probs=98.6
Q ss_pred ccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeeeC---CceeEeecCCcccccHhHHhhhccccceEE
Q psy9646 100 RGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATE---NRHYSHTDCPGHADYIKNMITGTSQMDGAI 176 (211)
Q Consensus 100 ~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~---~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~ 176 (211)
|-.+++-..+..++++++...+.-.+.......|+|.++....+... ...++|+|||||+.|.....+|.+.+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 44566667888888988888777667777777789999998888874 468999999999999999999999999999
Q ss_pred EEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 177 LVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 177 ~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
||||+.+|+++||.+-+.+++..++| +|+++|||
T Consensus 84 LVVa~dDGv~pQTiEAI~hak~a~vP-~iVAiNKi 117 (509)
T COG0532 84 LVVAADDGVMPQTIEAINHAKAAGVP-IVVAINKI 117 (509)
T ss_pred EEEEccCCcchhHHHHHHHHHHCCCC-EEEEEecc
Confidence 99999999999999999999999999 99999997
No 69
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.63 E-value=9e-16 Score=135.93 Aligned_cols=90 Identities=34% Similarity=0.489 Sum_probs=86.0
Q ss_pred cccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG 200 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~ 200 (211)
..+|..+.|+.||+|+......+.+.+++++++|||||.+|..++..+++.+|++++|+|+.+|+..|++.++..+...+
T Consensus 37 ~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ 116 (594)
T TIGR01394 37 RVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELG 116 (594)
T ss_pred ecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
+| +|+|+||+
T Consensus 117 ip-~IVviNKi 126 (594)
T TIGR01394 117 LK-PIVVINKI 126 (594)
T ss_pred CC-EEEEEECC
Confidence 99 67899997
No 70
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.63 E-value=4e-15 Score=102.02 Aligned_cols=91 Identities=24% Similarity=0.369 Sum_probs=80.0
Q ss_pred CCCCCeeEEEeeEEeec--------CCcEEEEEEEEEEEEecCCEEEEeec----------CceeeEEEEEEEecceecc
Q psy9646 17 DLDKPFYLPVEHTYSIP--------GRGTVVTGRLERGIVKKGMECEFTGY----------GRQFKTTVTGIEMFHKILD 78 (211)
Q Consensus 17 ~~~~p~~~~v~~~~~~~--------~~G~v~~G~v~~G~i~~g~~v~i~p~----------~~~~~~~v~~i~~~~~~~~ 78 (211)
+.++||+|+|-++|.++ .+|.|++|++++|.+++||++.|.|. .+...++|.||++++++++
T Consensus 1 d~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~ 80 (113)
T cd03688 1 DFTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQ 80 (113)
T ss_pred CCCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCcccc
Confidence 35789999999999999 89999999999999999999999976 1235789999999999999
Q ss_pred eecccCceeh---hccCCCccccccccccccc
Q psy9646 79 EAQAGDQLGA---LVKGMKRDEVNRGLIMAKP 107 (211)
Q Consensus 79 ~a~~G~~v~~---~l~~~~~~~v~~G~ii~~~ 107 (211)
+|.||+.+++ ....+.+.|..+|.++..+
T Consensus 81 ~a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 81 EAVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EEeCCCeEEEccccCccccccceeeEEEeecC
Confidence 9999999999 6667778889999887653
No 71
>PRK00007 elongation factor G; Reviewed
Probab=99.62 E-value=1.3e-15 Score=137.66 Aligned_cols=90 Identities=30% Similarity=0.441 Sum_probs=86.1
Q ss_pred cccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG 200 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~ 200 (211)
..+|..+.|..||+|++++...+.+.+++++|+|||||.+|..++..++..+|++++|+|+.+|+..|++.++.++...+
T Consensus 48 ~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~ 127 (693)
T PRK00007 48 ATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYK 127 (693)
T ss_pred ccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
+| .|+++||+
T Consensus 128 ~p-~iv~vNK~ 137 (693)
T PRK00007 128 VP-RIAFVNKM 137 (693)
T ss_pred CC-EEEEEECC
Confidence 99 56899997
No 72
>PRK12739 elongation factor G; Reviewed
Probab=99.60 E-value=1.9e-15 Score=136.78 Aligned_cols=90 Identities=32% Similarity=0.476 Sum_probs=86.1
Q ss_pred cccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG 200 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~ 200 (211)
..+|..+.|+.||+|++++..++++++++++|+|||||++|..++..++..+|++++|+|+.+|+..|++.++..+...+
T Consensus 46 ~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~ 125 (691)
T PRK12739 46 ATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYG 125 (691)
T ss_pred cccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
+| .|+++||+
T Consensus 126 ~p-~iv~iNK~ 135 (691)
T PRK12739 126 VP-RIVFVNKM 135 (691)
T ss_pred CC-EEEEEECC
Confidence 99 67899997
No 73
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.60 E-value=3.4e-15 Score=128.27 Aligned_cols=100 Identities=49% Similarity=0.773 Sum_probs=90.3
Q ss_pred hhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCC---CCcc
Q psy9646 112 KKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDG---AMPQ 188 (211)
Q Consensus 112 ~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~---~~~~ 188 (211)
.++.+|.+.+.+|..+.|+.||+|+++.+..+++++.++.|+|||||++|.+++..++..+|++++|+|+.++ ...+
T Consensus 49 ~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~ 128 (426)
T TIGR00483 49 KGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQ 128 (426)
T ss_pred cCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCc
Confidence 3444566677799999999999999999999999999999999999999999999999999999999999999 7788
Q ss_pred hHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 189 TREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 189 ~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.+++.++...+.+++|+++||+
T Consensus 129 t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 129 TREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred hHHHHHHHHHcCCCeEEEEEECh
Confidence 88888888888887788999996
No 74
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.59 E-value=5.6e-15 Score=117.38 Aligned_cols=89 Identities=35% Similarity=0.558 Sum_probs=84.0
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
+++..+.|..|++++......+++++.+++|+|||||.+|..++..+++.+|++++|+|+.+++..+++++++.+.+.++
T Consensus 38 ~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~ 117 (237)
T cd04168 38 RTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNI 117 (237)
T ss_pred cCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCC
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
| +++++||+
T Consensus 118 P-~iivvNK~ 126 (237)
T cd04168 118 P-TIIFVNKI 126 (237)
T ss_pred C-EEEEEECc
Confidence 9 67899996
No 75
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.59 E-value=3e-15 Score=137.77 Aligned_cols=90 Identities=29% Similarity=0.383 Sum_probs=82.6
Q ss_pred cccccchhhcccceEEeEeEEEeeeC----------------CceeEeecCCcccccHhHHhhhccccceEEEEEeccCC
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATE----------------NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDG 184 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~----------------~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~ 184 (211)
..+|..+.|+.||+|++++...+.+. ++.++|+|||||.+|..++..|++.+|++++||||.+|
T Consensus 55 ~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~G 134 (843)
T PLN00116 55 RMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134 (843)
T ss_pred eeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCC
Confidence 34799999999999999887666653 67899999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 185 AMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+..||+.+++++...++| +|+++|||
T Consensus 135 v~~~t~~~~~~~~~~~~p-~i~~iNK~ 160 (843)
T PLN00116 135 VCVQTETVLRQALGERIR-PVLTVNKM 160 (843)
T ss_pred CcccHHHHHHHHHHCCCC-EEEEEECC
Confidence 999999999999999999 67999997
No 76
>PTZ00416 elongation factor 2; Provisional
Probab=99.59 E-value=3.1e-15 Score=137.45 Aligned_cols=90 Identities=32% Similarity=0.421 Sum_probs=82.7
Q ss_pred cccccchhhcccceEEeEeEEEeeeC----------CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchH
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATE----------NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTR 190 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~----------~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~ 190 (211)
..+|..+.|+.||+|++.+...+.+. ++.++|+|||||++|..++..++..+|++++|+|+.+|+..|++
T Consensus 55 ~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~ 134 (836)
T PTZ00416 55 RFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE 134 (836)
T ss_pred eecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH
Confidence 34799999999999999887766665 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEEeCC
Q psy9646 191 EHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 191 ~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+++++...++| +|+++|||
T Consensus 135 ~~~~~~~~~~~p-~iv~iNK~ 154 (836)
T PTZ00416 135 TVLRQALQERIR-PVLFINKV 154 (836)
T ss_pred HHHHHHHHcCCC-EEEEEECh
Confidence 999999999988 77899997
No 77
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.58 E-value=5.6e-15 Score=130.96 Aligned_cols=102 Identities=34% Similarity=0.575 Sum_probs=89.4
Q ss_pred hhhhhhhcccccc---cccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC
Q psy9646 110 ADKKLAKVKQYAD---IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM 186 (211)
Q Consensus 110 ~~~~~~~f~~~i~---~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~ 186 (211)
...|++++...+. .+..+.|..+|+|+++.+..++.++..+.|+|||||++|.+++..++..+|++++|+|+.+|++
T Consensus 9 ~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~ 88 (581)
T TIGR00475 9 VDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVM 88 (581)
T ss_pred CCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc
Confidence 3445555444332 4667788899999999999999988999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 187 PQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+.+++..+...++|++|+++||+
T Consensus 89 ~qT~ehl~il~~lgi~~iIVVlNK~ 113 (581)
T TIGR00475 89 TQTGEHLAVLDLLGIPHTIVVITKA 113 (581)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEECC
Confidence 9999999999999999888999997
No 78
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.57 E-value=5e-15 Score=134.68 Aligned_cols=90 Identities=40% Similarity=0.546 Sum_probs=82.0
Q ss_pred cccccchhhcccceEEeEeEEEeee----CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHH
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYAT----ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLA 196 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~----~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~ 196 (211)
..+|..+.|+.||+|++++...+.+ .+++++|+|||||++|..++..++..+|++++|+|+.+|+..+++.+++++
T Consensus 56 ~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~ 135 (731)
T PRK07560 56 LALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA 135 (731)
T ss_pred eecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH
Confidence 4589999999999999998766554 578899999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEEEeCC
Q psy9646 197 KQIGVTNIVVFINKF 211 (211)
Q Consensus 197 ~~~~~~~~i~~inK~ 211 (211)
.+.++| .|+++||+
T Consensus 136 ~~~~~~-~iv~iNK~ 149 (731)
T PRK07560 136 LRERVK-PVLFINKV 149 (731)
T ss_pred HHcCCC-eEEEEECc
Confidence 889998 57899997
No 79
>KOG1145|consensus
Probab=99.56 E-value=9.6e-15 Score=124.23 Aligned_cols=111 Identities=31% Similarity=0.363 Sum_probs=95.2
Q ss_pred ccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeee-CCceeEeecCCcccccHhHHhhhccccceEEEE
Q psy9646 100 RGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYAT-ENRHYSHTDCPGHADYIKNMITGTSQMDGAILV 178 (211)
Q Consensus 100 ~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~-~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~v 178 (211)
|-.++.-+++..++++.+..++.-.........|+|.++.....+. .+..++|+|||||..|.....+|...+|.+++|
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLV 231 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLV 231 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEE
Confidence 4455555777788888877666655666666778999998877764 457899999999999999999999999999999
Q ss_pred EeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 179 VAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 179 vd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|.|.+|+++||.+.+++++..++| +|+++|||
T Consensus 232 VAadDGVmpQT~EaIkhAk~A~Vp-iVvAinKi 263 (683)
T KOG1145|consen 232 VAADDGVMPQTLEAIKHAKSANVP-IVVAINKI 263 (683)
T ss_pred EEccCCccHhHHHHHHHHHhcCCC-EEEEEecc
Confidence 999999999999999999999999 88999997
No 80
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.55 E-value=1.9e-14 Score=116.21 Aligned_cols=89 Identities=29% Similarity=0.521 Sum_probs=83.5
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.+|..+.|+.|++++..+...+++.+.+++++|||||.+|..+++.++..+|++++|+|+..++..+++.+++.+...++
T Consensus 45 ~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~ 124 (267)
T cd04169 45 TSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGI 124 (267)
T ss_pred cCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCC
Confidence 36788999999999999999999999999999999999999999999999999999999999998899999999988899
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
| +++++||+
T Consensus 125 P-~iivvNK~ 133 (267)
T cd04169 125 P-IITFINKL 133 (267)
T ss_pred C-EEEEEECC
Confidence 8 77899996
No 81
>KOG0459|consensus
Probab=99.55 E-value=6.6e-15 Score=121.16 Aligned_cols=104 Identities=38% Similarity=0.606 Sum_probs=96.0
Q ss_pred chhhhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-
Q psy9646 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM- 186 (211)
Q Consensus 108 ~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~- 186 (211)
.....++.++...|.+|....|+.+|-|+.....+|+++..+++++|+|||.-|..+|+.|+++||.+++|+.|+.|.+
T Consensus 117 eake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefe 196 (501)
T KOG0459|consen 117 EAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFE 196 (501)
T ss_pred HHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhh
Confidence 3445566778888889999999999999999999999999999999999999999999999999999999999987764
Q ss_pred ------cchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 187 ------PQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 187 ------~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+++|+.+++.+|+.++|+++|||
T Consensus 197 tgFerGgQTREha~Lakt~gv~~lVv~vNKM 227 (501)
T KOG0459|consen 197 TGFEKGGQTREHAMLAKTAGVKHLIVLINKM 227 (501)
T ss_pred cccccccchhHHHHHHHhhccceEEEEEEec
Confidence 6999999999999999999999997
No 82
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.54 E-value=1.7e-14 Score=113.71 Aligned_cols=68 Identities=32% Similarity=0.501 Sum_probs=62.3
Q ss_pred eeeCCceeEeecCCcccccHhHHhhhcc--ccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 143 YATENRHYSHTDCPGHADYIKNMITGTS--QMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 143 ~~~~~~~~~~iDtPG~~~~~~~~~~~~~--~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++..++.++|+|||||++|.+++..++. .+|++++|+|+.+++.+++++++.++...++| +++++||+
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~ 148 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKI 148 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECc
Confidence 3455678999999999999999999986 79999999999999999999999999999999 78999996
No 83
>KOG0465|consensus
Probab=99.54 E-value=8.3e-15 Score=125.79 Aligned_cols=89 Identities=31% Similarity=0.465 Sum_probs=85.4
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.+|....|+.||+|+..+..++.|.++.+++||||||-+|--++.+|++.-|++++++|+..|+.+|+..+++++++.++
T Consensus 78 ~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~v 157 (721)
T KOG0465|consen 78 TMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNV 157 (721)
T ss_pred eeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
|. |.++|||
T Consensus 158 P~-i~FiNKm 166 (721)
T KOG0465|consen 158 PR-ICFINKM 166 (721)
T ss_pred Ce-EEEEehh
Confidence 94 5789996
No 84
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.53 E-value=2.8e-14 Score=124.95 Aligned_cols=89 Identities=28% Similarity=0.480 Sum_probs=84.3
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.+|..+.|+.||+|+..+...+++++++++++|||||.+|...++.++..+|++++|+|+..++..+++.+++.+...++
T Consensus 53 ~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~i 132 (526)
T PRK00741 53 TSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDT 132 (526)
T ss_pred cCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
| +++++||+
T Consensus 133 P-iiv~iNK~ 141 (526)
T PRK00741 133 P-IFTFINKL 141 (526)
T ss_pred C-EEEEEECC
Confidence 9 78999996
No 85
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.4e-14 Score=116.24 Aligned_cols=93 Identities=41% Similarity=0.627 Sum_probs=81.7
Q ss_pred cccccccchhhcccceEEeEeEEEeee--------------C------------CceeEeecCCcccccHhHHhhhcccc
Q psy9646 119 QYADIDNAPEEKARGITINVAHVEYAT--------------E------------NRHYSHTDCPGHADYIKNMITGTSQM 172 (211)
Q Consensus 119 ~~i~~~~~~~e~~rg~tv~~~~~~~~~--------------~------------~~~~~~iDtPG~~~~~~~~~~~~~~~ 172 (211)
.-+|++++..|.+||+|+++.|..... . .+.+.|+|.|||+-++.+|++|.+..
T Consensus 31 sGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlM 110 (415)
T COG5257 31 SGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALM 110 (415)
T ss_pred hceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhh
Confidence 345899999999999999998754221 1 14689999999999999999999999
Q ss_pred ceEEEEEeccCC-CCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 173 DGAILVVAATDG-AMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 173 d~~~~vvd~~~~-~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|++++|++|++. +++||++|+..+.-.|++.+|++-||+
T Consensus 111 DgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKI 150 (415)
T COG5257 111 DGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKI 150 (415)
T ss_pred cceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccc
Confidence 999999999865 679999999999999999999999996
No 86
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.53 E-value=3.5e-14 Score=124.35 Aligned_cols=89 Identities=25% Similarity=0.443 Sum_probs=84.2
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.+|..+.|+.||+++.++...+++.+++++|+|||||.+|...++.++..+|++++|+|+..++..+++.+++.+...++
T Consensus 54 ~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~ 133 (527)
T TIGR00503 54 KSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDT 133 (527)
T ss_pred cCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 36888999999999999999999999999999999999999999999999999999999999999999999999988898
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
| +|+++||+
T Consensus 134 P-iivviNKi 142 (527)
T TIGR00503 134 P-IFTFMNKL 142 (527)
T ss_pred C-EEEEEECc
Confidence 8 78999996
No 87
>PRK10218 GTP-binding protein; Provisional
Probab=99.51 E-value=7.3e-14 Score=123.85 Aligned_cols=90 Identities=37% Similarity=0.426 Sum_probs=85.4
Q ss_pred cccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG 200 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~ 200 (211)
..+|..+.|..+|+|+......+.+++.+++++|||||.+|..++..+++.+|++++|+|+.+|+..+++.++..+...+
T Consensus 41 ~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~g 120 (607)
T PRK10218 41 RVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYG 120 (607)
T ss_pred eeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
+| .|+++||+
T Consensus 121 ip-~IVviNKi 130 (607)
T PRK10218 121 LK-PIVVINKV 130 (607)
T ss_pred CC-EEEEEECc
Confidence 99 56899997
No 88
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.51 E-value=5.6e-14 Score=127.22 Aligned_cols=90 Identities=31% Similarity=0.452 Sum_probs=85.2
Q ss_pred cccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG 200 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~ 200 (211)
..+|..+.|+.||+|+++....+++++.+++|+|||||.+|..++..+++.+|++++|+|+.+|+..+++.++.++...+
T Consensus 48 ~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~ 127 (689)
T TIGR00484 48 ATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYE 127 (689)
T ss_pred cccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
+| +++++||+
T Consensus 128 ~p-~ivviNK~ 137 (689)
T TIGR00484 128 VP-RIAFVNKM 137 (689)
T ss_pred CC-EEEEEECC
Confidence 99 66899997
No 89
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=2.4e-14 Score=120.19 Aligned_cols=89 Identities=31% Similarity=0.458 Sum_probs=81.0
Q ss_pred ccccchhhcccceEEeEeEEEeee-----CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHH
Q psy9646 122 DIDNAPEEKARGITINVAHVEYAT-----ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLA 196 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~-----~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~ 196 (211)
.+|+...|+.||+|++.....+.+ +.+.+++||||||.||.-++.++++.+.+++++|||.+|+..||..-..++
T Consensus 45 ~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlA 124 (603)
T COG0481 45 VLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA 124 (603)
T ss_pred hhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHH
Confidence 489999999999999988766554 337899999999999999999999999999999999999999999988999
Q ss_pred HHcCCCeEEEEEeCC
Q psy9646 197 KQIGVTNIVVFINKF 211 (211)
Q Consensus 197 ~~~~~~~~i~~inK~ 211 (211)
...+.. +|-|+|||
T Consensus 125 le~~Le-IiPViNKI 138 (603)
T COG0481 125 LENNLE-IIPVLNKI 138 (603)
T ss_pred HHcCcE-EEEeeecc
Confidence 999987 88899997
No 90
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.50 E-value=6.6e-14 Score=126.88 Aligned_cols=113 Identities=32% Similarity=0.384 Sum_probs=95.4
Q ss_pred ccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEE
Q psy9646 98 VNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAIL 177 (211)
Q Consensus 98 v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~ 177 (211)
..|-.+++-.++...|++++..++..........+++|.++....+.+.+.+++|+|||||.+|...+..++..+|+++|
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 45566666667777888887766543333444567899998888888888999999999999999999999999999999
Q ss_pred EEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 178 VVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 178 vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+|+.+|+.+++.+++.++...++| +|+++||+
T Consensus 367 VVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKi 399 (787)
T PRK05306 367 VVAADDGVMPQTIEAINHAKAAGVP-IIVAINKI 399 (787)
T ss_pred EEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECc
Confidence 9999999999999999999999999 88999996
No 91
>KOG0467|consensus
Probab=99.50 E-value=4.2e-14 Score=124.04 Aligned_cols=90 Identities=27% Similarity=0.427 Sum_probs=86.2
Q ss_pred cccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG 200 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~ 200 (211)
.++|..+.|..||+|.+++..++..+++.+++||+|||-||-.++.+|..-+|.++++||+.+|+.+||..+++++...|
T Consensus 45 rfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~ 124 (887)
T KOG0467|consen 45 RFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEG 124 (887)
T ss_pred eeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
.+ .|+|+|||
T Consensus 125 ~~-~~lvinki 134 (887)
T KOG0467|consen 125 LK-PILVINKI 134 (887)
T ss_pred Cc-eEEEEehh
Confidence 88 56999997
No 92
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.50 E-value=8.6e-14 Score=118.83 Aligned_cols=90 Identities=41% Similarity=0.638 Sum_probs=79.3
Q ss_pred ccccchhhcccceEEeEeEEEee--------------e------------CCceeEeecCCcccccHhHHhhhccccceE
Q psy9646 122 DIDNAPEEKARGITINVAHVEYA--------------T------------ENRHYSHTDCPGHADYIKNMITGTSQMDGA 175 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~--------------~------------~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~ 175 (211)
+++.++.|..||+|+.+.+..+. + ....+.|+|||||++|.+++..+++.+|++
T Consensus 28 ~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~a 107 (406)
T TIGR03680 28 WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGA 107 (406)
T ss_pred ecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEE
Confidence 47888999999999998865543 1 135799999999999999999999999999
Q ss_pred EEEEeccCCC-CcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 176 ILVVAATDGA-MPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 176 ~~vvd~~~~~-~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++|+|+.++. .+++++++..+...+++++|+++||+
T Consensus 108 IlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~ 144 (406)
T TIGR03680 108 LLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKI 144 (406)
T ss_pred EEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 9999999998 89999999999999988788999996
No 93
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.49 E-value=1.3e-13 Score=107.17 Aligned_cols=89 Identities=37% Similarity=0.597 Sum_probs=75.5
Q ss_pred cccchhhcccceEEeEeEEEeeeC---------------------------C------ceeEeecCCcccccHhHHhhhc
Q psy9646 123 IDNAPEEKARGITINVAHVEYATE---------------------------N------RHYSHTDCPGHADYIKNMITGT 169 (211)
Q Consensus 123 ~~~~~~e~~rg~tv~~~~~~~~~~---------------------------~------~~~~~iDtPG~~~~~~~~~~~~ 169 (211)
.+..+.|..|++++..++..+.+. + .++.|+|||||.+|..++..++
T Consensus 25 ~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~ 104 (203)
T cd01888 25 TVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGA 104 (203)
T ss_pred CCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhh
Confidence 567788888888888876665543 2 7899999999999999999999
Q ss_pred cccceEEEEEeccCC-CCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 170 SQMDGAILVVAATDG-AMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 170 ~~~d~~~~vvd~~~~-~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..+|++++|+|+.++ ...++.+++..+...+++++|+++||+
T Consensus 105 ~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 105 AVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred hcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 999999999999974 667888888888878887688899996
No 94
>KOG0468|consensus
Probab=99.49 E-value=7.9e-14 Score=120.85 Aligned_cols=93 Identities=28% Similarity=0.357 Sum_probs=82.9
Q ss_pred ccccccccchhhcccceEEeEeEEEeee-----CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHH
Q psy9646 118 KQYADIDNAPEEKARGITINVAHVEYAT-----ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREH 192 (211)
Q Consensus 118 ~~~i~~~~~~~e~~rg~tv~~~~~~~~~-----~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~ 192 (211)
....++|.+..|+.||.++++.-.++-. +.+-++++|||||.+|+.++..+++.+|++++++|+.+|++-+++++
T Consensus 162 ~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ 241 (971)
T KOG0468|consen 162 ADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI 241 (971)
T ss_pred ccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH
Confidence 3445689999999999999987666543 33568999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEEEeCC
Q psy9646 193 LLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 193 ~~~~~~~~~~~~i~~inK~ 211 (211)
++++-....| +++|+||+
T Consensus 242 ikhaiq~~~~-i~vviNKi 259 (971)
T KOG0468|consen 242 IKHAIQNRLP-IVVVINKV 259 (971)
T ss_pred HHHHHhccCc-EEEEEehh
Confidence 9999998888 88999996
No 95
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.48 E-value=3.8e-13 Score=119.32 Aligned_cols=104 Identities=28% Similarity=0.406 Sum_probs=90.6
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecC-ceeeEEEEEEEec----cee
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG-RQFKTTVTGIEMF----HKI 76 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~-~~~~~~v~~i~~~----~~~ 76 (211)
+||+.+.+++|.|..+.++||+|+|..+++.++.|+++.|||.+|++++||.|.+.|.+ +..+.+|++|+.+ +.+
T Consensus 181 ~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~ 260 (594)
T TIGR01394 181 PLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVE 260 (594)
T ss_pred HHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceE
Confidence 58899999899888888999999999999999999999999999999999999999873 2346789999876 479
Q ss_pred cceecccCceehhccCCCcccccccccccccch
Q psy9646 77 LDEAQAGDQLGALVKGMKRDEVNRGLIMAKPVL 109 (211)
Q Consensus 77 ~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~ 109 (211)
+++|.|||++++. +..++.+|++++....
T Consensus 261 v~~a~aGDiv~i~----gl~~i~~Gdtl~~~~~ 289 (594)
T TIGR01394 261 IDEAGAGDIVAVA----GLEDINIGETIADPEV 289 (594)
T ss_pred CCEECCCCEEEEe----CCcccCCCCEEeCCCc
Confidence 9999999999873 3467899999987654
No 96
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.45 E-value=2.9e-13 Score=119.82 Aligned_cols=111 Identities=30% Similarity=0.364 Sum_probs=91.3
Q ss_pred ccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeeeCCc-eeEeecCCcccccHhHHhhhccccceEEEE
Q psy9646 100 RGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENR-HYSHTDCPGHADYIKNMITGTSQMDGAILV 178 (211)
Q Consensus 100 ~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~-~~~~iDtPG~~~~~~~~~~~~~~~d~~~~v 178 (211)
|-.+++-.++...|++++..++..........+|+|.+.....+++.+. ++.|+|||||++|...+.+++..+|++++|
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILV 165 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLV 165 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEE
Confidence 4445555667778888876665444444444567888888877777655 899999999999999999999999999999
Q ss_pred EeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 179 VAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 179 vd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+.+|+.+|+.+++.+++..++| +|+++||+
T Consensus 166 Vda~dgv~~qT~e~i~~~~~~~vP-iIVviNKi 197 (587)
T TIGR00487 166 VAADDGVMPQTIEAISHAKAANVP-IIVAINKI 197 (587)
T ss_pred EECCCCCCHhHHHHHHHHHHcCCC-EEEEEECc
Confidence 999999999999999999999999 88999996
No 97
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.45 E-value=2.3e-13 Score=121.05 Aligned_cols=90 Identities=30% Similarity=0.441 Sum_probs=80.9
Q ss_pred cccccchhhcccceEEeEeEEEeeeC-----CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHH
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATE-----NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLL 195 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~-----~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~ 195 (211)
..+|..+.|+.||+|+......+.+. +++++|+|||||.+|..++..+++.+|++++|+|+.+++..++.+++..
T Consensus 42 ~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~ 121 (600)
T PRK05433 42 QVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL 121 (600)
T ss_pred ccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH
Confidence 45788999999999999877776553 5789999999999999999999999999999999999999999998888
Q ss_pred HHHcCCCeEEEEEeCC
Q psy9646 196 AKQIGVTNIVVFINKF 211 (211)
Q Consensus 196 ~~~~~~~~~i~~inK~ 211 (211)
+...++| +|+|+||+
T Consensus 122 ~~~~~lp-iIvViNKi 136 (600)
T PRK05433 122 ALENDLE-IIPVLNKI 136 (600)
T ss_pred HHHCCCC-EEEEEECC
Confidence 8888998 88999996
No 98
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.45 E-value=6e-13 Score=111.61 Aligned_cols=105 Identities=26% Similarity=0.351 Sum_probs=91.9
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeec-CceeeEEEEEEEecc----ee
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGY-GRQFKTTVTGIEMFH----KI 76 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~-~~~~~~~v~~i~~~~----~~ 76 (211)
.|+++|..++|.|..+.++||+|.|+...+.+|.|++..|||.+|++|+|+.|.+.-. +.....+|.++.-+. .+
T Consensus 185 pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~e 264 (603)
T COG1217 185 PLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIE 264 (603)
T ss_pred HHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeee
Confidence 5899999999999999999999999999999999999999999999999999977544 445578899987665 68
Q ss_pred cceecccCceehhccCCCcccccccccccccchh
Q psy9646 77 LDEAQAGDQLGALVKGMKRDEVNRGLIMAKPVLA 110 (211)
Q Consensus 77 ~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~ 110 (211)
+++|.|||+|++ ...+++..|+++|.+..+
T Consensus 265 i~eA~AGDIVai----aG~~~~~igdTi~d~~~~ 294 (603)
T COG1217 265 IEEAEAGDIVAI----AGLEDINIGDTICDPDNP 294 (603)
T ss_pred cccccccCEEEE----cCcccccccccccCCCCc
Confidence 999999999997 456789999999986543
No 99
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.44 E-value=1.1e-12 Score=87.42 Aligned_cols=79 Identities=15% Similarity=0.351 Sum_probs=71.2
Q ss_pred EEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCc-eeeEEEEEEEecceecceecccCceehhccCCCcccccccc
Q psy9646 24 LPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGR-QFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGL 102 (211)
Q Consensus 24 ~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~-~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~~G~ 102 (211)
.-|+++|++++.|+++.|+|++|.+++|+.+.++|+++ ....+|+|++.+++++++|.+|+.+++.|++++ ++++|+
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 46889998888899999999999999999999999974 136799999999999999999999999999766 999999
Q ss_pred cc
Q psy9646 103 IM 104 (211)
Q Consensus 103 ii 104 (211)
++
T Consensus 81 vi 82 (84)
T cd03692 81 II 82 (84)
T ss_pred EE
Confidence 76
No 100
>PRK10218 GTP-binding protein; Provisional
Probab=99.44 E-value=8.7e-13 Score=117.05 Aligned_cols=103 Identities=24% Similarity=0.290 Sum_probs=88.4
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeec-CceeeEEEEEEEec----cee
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGY-GRQFKTTVTGIEMF----HKI 76 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~-~~~~~~~v~~i~~~----~~~ 76 (211)
.||+++.+++|+|.++.++||+|+|+.+++.++.|++..|||.+|++++||.|.+.+. ++..+.+|++|... ..+
T Consensus 185 ~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~ 264 (607)
T PRK10218 185 PLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIE 264 (607)
T ss_pred HHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceE
Confidence 5789999999989888899999999999999999999999999999999999999876 43335778888655 478
Q ss_pred cceecccCceehhccCCCcccccccccccccc
Q psy9646 77 LDEAQAGDQLGALVKGMKRDEVNRGLIMAKPV 108 (211)
Q Consensus 77 ~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~ 108 (211)
+++|.|||++++ .+..++..|++++...
T Consensus 265 v~~a~AGdIvai----~gl~~~~~GdTl~~~~ 292 (607)
T PRK10218 265 TDLAEAGDIVAI----TGLGELNISDTVCDTQ 292 (607)
T ss_pred CCEEcCCCEEEE----ECccccccCcEEecCC
Confidence 999999999996 2456789999998654
No 101
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.43 E-value=2.6e-13 Score=123.33 Aligned_cols=90 Identities=40% Similarity=0.565 Sum_probs=81.4
Q ss_pred cccccchhhcccceEEeEeEEE----eeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHH
Q psy9646 121 ADIDNAPEEKARGITINVAHVE----YATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLA 196 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~----~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~ 196 (211)
..++..+.|+.|++|+..++.+ +++.+++++|+|||||++|..++..++..+|++++|+|+.+|+..+++++++.+
T Consensus 55 ~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~ 134 (720)
T TIGR00490 55 LYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQA 134 (720)
T ss_pred eecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHH
Confidence 3478889999999999887654 667889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEEEeCC
Q psy9646 197 KQIGVTNIVVFINKF 211 (211)
Q Consensus 197 ~~~~~~~~i~~inK~ 211 (211)
...++| .++++||+
T Consensus 135 ~~~~~p-~ivviNKi 148 (720)
T TIGR00490 135 LKENVK-PVLFINKV 148 (720)
T ss_pred HHcCCC-EEEEEECh
Confidence 888998 56899996
No 102
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.43 E-value=3.4e-13 Score=115.20 Aligned_cols=90 Identities=43% Similarity=0.657 Sum_probs=78.5
Q ss_pred ccccchhhcccceEEeEeEEEeee--------------C------------CceeEeecCCcccccHhHHhhhccccceE
Q psy9646 122 DIDNAPEEKARGITINVAHVEYAT--------------E------------NRHYSHTDCPGHADYIKNMITGTSQMDGA 175 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~--------------~------------~~~~~~iDtPG~~~~~~~~~~~~~~~d~~ 175 (211)
+++.++.|..||+|+.+++..+++ . ..+++|+|||||.+|..++..++..+|++
T Consensus 33 ~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~ 112 (411)
T PRK04000 33 WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGA 112 (411)
T ss_pred ecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEE
Confidence 578899999999999987644332 1 26899999999999999999999999999
Q ss_pred EEEEeccCCC-CcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 176 ILVVAATDGA-MPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 176 ~~vvd~~~~~-~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++|+|+.++. ..++.+++..+...+++++++++||+
T Consensus 113 llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~ 149 (411)
T PRK04000 113 ILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKI 149 (411)
T ss_pred EEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEee
Confidence 9999999987 78899999999888887788999996
No 103
>COG1159 Era GTPase [General function prediction only]
Probab=99.42 E-value=6.8e-13 Score=106.09 Aligned_cols=101 Identities=18% Similarity=0.123 Sum_probs=77.1
Q ss_pred hhhhhhhcccccccccc-hhhcccceEEeEeEEEeeeCCceeEeecCCcccc--------cHhHHhhhccccceEEEEEe
Q psy9646 110 ADKKLAKVKQYADIDNA-PEEKARGITINVAHVEYATENRHYSHTDCPGHAD--------YIKNMITGTSQMDGAILVVA 180 (211)
Q Consensus 110 ~~~~~~~f~~~i~~~~~-~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~--------~~~~~~~~~~~~d~~~~vvd 180 (211)
|..|++.+...+.-... -.....+.|.+.-.+-++.++.|++|+||||.|. |++++++++.++|+++||+|
T Consensus 15 PNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd 94 (298)
T COG1159 15 PNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVD 94 (298)
T ss_pred CCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEe
Confidence 44455555544432111 1122334555555667788899999999999663 68999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 181 ATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.+++.+.++.+++.++..+.| +|+++||+
T Consensus 95 ~~~~~~~~d~~il~~lk~~~~p-vil~iNKI 124 (298)
T COG1159 95 ADEGWGPGDEFILEQLKKTKTP-VILVVNKI 124 (298)
T ss_pred ccccCCccHHHHHHHHhhcCCC-eEEEEEcc
Confidence 9999999999999999997778 77999996
No 104
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.41 E-value=7.7e-13 Score=103.52 Aligned_cols=92 Identities=26% Similarity=0.439 Sum_probs=79.0
Q ss_pred cccccccchhhcccceEEeEeEEEeeeC-----CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHH
Q psy9646 119 QYADIDNAPEEKARGITINVAHVEYATE-----NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHL 193 (211)
Q Consensus 119 ~~i~~~~~~~e~~rg~tv~~~~~~~~~~-----~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~ 193 (211)
...+++..+.|..+++++......+.+. ...+.++|||||.+|...+..++..+|++++|+|+.++...++++++
T Consensus 37 ~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~ 116 (213)
T cd04167 37 PLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLI 116 (213)
T ss_pred ceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHH
Confidence 4456788899999999998877766543 36799999999999999999999999999999999999888888888
Q ss_pred HHHHHcCCCeEEEEEeCC
Q psy9646 194 LLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 194 ~~~~~~~~~~~i~~inK~ 211 (211)
+.+...+.| +++++||+
T Consensus 117 ~~~~~~~~p-~iiviNK~ 133 (213)
T cd04167 117 RHAILEGLP-IVLVINKI 133 (213)
T ss_pred HHHHHcCCC-EEEEEECc
Confidence 888777877 78999996
No 105
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.41 E-value=2.2e-12 Score=114.63 Aligned_cols=104 Identities=27% Similarity=0.403 Sum_probs=91.2
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc---eecc
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH---KILD 78 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~---~~~~ 78 (211)
+|+++|.+.+|.|.++.++||+++|.++++.++.|+++.|||.+|++++||+|.++|++. ..+|++|..+. .+++
T Consensus 170 ~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~--~~~v~~i~~~~~~~~~v~ 247 (595)
T TIGR01393 170 EILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGK--EYEVDEVGVFTPKLTKTD 247 (595)
T ss_pred HHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCC--eeEEeEEEEecCCceECC
Confidence 588999888988988899999999999999999999999999999999999999999875 67888998776 6789
Q ss_pred eecccCceehhccCCC-cccccccccccccc
Q psy9646 79 EAQAGDQLGALVKGMK-RDEVNRGLIMAKPV 108 (211)
Q Consensus 79 ~a~~G~~v~~~l~~~~-~~~v~~G~ii~~~~ 108 (211)
++.||| +++.+.+++ ..+++.|++++...
T Consensus 248 ~~~aGd-Ig~i~~~~~~~~~~~~Gdtl~~~~ 277 (595)
T TIGR01393 248 ELSAGE-VGYIIAGIKDVSDVRVGDTITHVK 277 (595)
T ss_pred EEcCCC-EEEEeccccccCccCCCCEEECCC
Confidence 999999 666666653 46799999998654
No 106
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.41 E-value=1.3e-12 Score=97.18 Aligned_cols=101 Identities=38% Similarity=0.606 Sum_probs=77.6
Q ss_pred hhhhhhcccccc---cccchhhcccceEEeEeEEEeeeC-CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC
Q psy9646 111 DKKLAKVKQYAD---IDNAPEEKARGITINVAHVEYATE-NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM 186 (211)
Q Consensus 111 ~~~~~~f~~~i~---~~~~~~e~~rg~tv~~~~~~~~~~-~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~ 186 (211)
..|++++...+. .+..+.+..++.++...+..+... +..+.++||||+++|...+..++..+|++++|+|+.+++.
T Consensus 10 ~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~ 89 (164)
T cd04171 10 DHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIM 89 (164)
T ss_pred CCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCcc
Confidence 344444443332 233344556678888877777766 7889999999999999888899999999999999999888
Q ss_pred cchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 187 PQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.+.+..++..+.+++++++||+
T Consensus 90 ~~~~~~~~~~~~~~~~~~ilv~NK~ 114 (164)
T cd04171 90 PQTREHLEILELLGIKRGLVVLTKA 114 (164)
T ss_pred HhHHHHHHHHHHhCCCcEEEEEECc
Confidence 8888877777777774488999996
No 107
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.40 E-value=9.3e-13 Score=101.35 Aligned_cols=88 Identities=34% Similarity=0.631 Sum_probs=76.1
Q ss_pred cccchhhcccceEEeEeEEEeeeC--------------CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc
Q psy9646 123 IDNAPEEKARGITINVAHVEYATE--------------NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ 188 (211)
Q Consensus 123 ~~~~~~e~~rg~tv~~~~~~~~~~--------------~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~ 188 (211)
++....+..|+.|+...+..+++. +.++.++|||||..|.+.++.+...+|++++|+|+.++...+
T Consensus 29 ~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~ 108 (192)
T cd01889 29 FDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQ 108 (192)
T ss_pred hccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHH
Confidence 567778889999999887777665 678999999999999999999999999999999999998888
Q ss_pred hHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 189 TREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 189 ~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.+.+..+...+.| +++++||+
T Consensus 109 ~~~~~~~~~~~~~~-~iiv~NK~ 130 (192)
T cd01889 109 TAECLVIGEILCKK-LIVVLNKI 130 (192)
T ss_pred HHHHHHHHHHcCCC-EEEEEECc
Confidence 87777777777887 77999996
No 108
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.40 E-value=1e-12 Score=116.80 Aligned_cols=89 Identities=30% Similarity=0.439 Sum_probs=79.2
Q ss_pred ccccchhhcccceEEeEeEEEeeeC-----CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHH
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATE-----NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLA 196 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~-----~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~ 196 (211)
.+|+.+.|+.||+|+......+.+. ..+++|+|||||.+|..++..++..+|++++|+|+.+++..++.+++..+
T Consensus 39 ~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~ 118 (595)
T TIGR01393 39 VLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLA 118 (595)
T ss_pred ccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHH
Confidence 4788899999999999887766553 26899999999999999999999999999999999999999999888888
Q ss_pred HHcCCCeEEEEEeCC
Q psy9646 197 KQIGVTNIVVFINKF 211 (211)
Q Consensus 197 ~~~~~~~~i~~inK~ 211 (211)
...++| +|+++||+
T Consensus 119 ~~~~ip-iIiViNKi 132 (595)
T TIGR01393 119 LENDLE-IIPVINKI 132 (595)
T ss_pred HHcCCC-EEEEEECc
Confidence 888888 88999996
No 109
>KOG0464|consensus
Probab=99.40 E-value=7.1e-14 Score=115.79 Aligned_cols=88 Identities=31% Similarity=0.413 Sum_probs=83.9
Q ss_pred cccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCC
Q psy9646 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVT 202 (211)
Q Consensus 123 ~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
.|....|+.||+|+.....+|.|+++++++||||||.+|--++.+.++..|+++.|+|+..|+.+|+..+|+++.+.++|
T Consensus 77 tdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip 156 (753)
T KOG0464|consen 77 TDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIP 156 (753)
T ss_pred HHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCc
Confidence 57778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCC
Q psy9646 203 NIVVFINKF 211 (211)
Q Consensus 203 ~~i~~inK~ 211 (211)
. +.++|||
T Consensus 157 ~-~~finkm 164 (753)
T KOG0464|consen 157 A-HCFINKM 164 (753)
T ss_pred h-hhhhhhh
Confidence 4 5889997
No 110
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.39 E-value=1.3e-12 Score=105.84 Aligned_cols=88 Identities=27% Similarity=0.423 Sum_probs=81.5
Q ss_pred cccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCC
Q psy9646 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVT 202 (211)
Q Consensus 123 ~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
.+..+.+..|+.++......+++++++++++||||+.+|...+..++..+|++++|+|+..+...++..+++.+...++|
T Consensus 39 ~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p 118 (268)
T cd04170 39 SDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIP 118 (268)
T ss_pred CCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC
Confidence 57778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCC
Q psy9646 203 NIVVFINKF 211 (211)
Q Consensus 203 ~~i~~inK~ 211 (211)
.++++||+
T Consensus 119 -~iivvNK~ 126 (268)
T cd04170 119 -RIIFINKM 126 (268)
T ss_pred -EEEEEECC
Confidence 66899996
No 111
>KOG1143|consensus
Probab=99.38 E-value=9.3e-13 Score=107.91 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=125.5
Q ss_pred ChHHHHHhhhCCCCCCC------CCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeec--CceeeEEEEEEEe
Q psy9646 1 MELLNQIDTYIPQPVRD------LDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGY--GRQFKTTVTGIEM 72 (211)
Q Consensus 1 ~~ll~~l~~~i~~p~~~------~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~--~~~~~~~v~~i~~ 72 (211)
|.||..+.+.+++.-.. ...|..|.|+++|.++..|+|+.|.+.+|.+..|+.+.+.|. |.+.+.+|-+|++
T Consensus 376 l~ll~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~R 455 (591)
T KOG1143|consen 376 LRLLRTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRR 455 (591)
T ss_pred hhHHHHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeec
Confidence 46788888877643221 245889999999999999999999999999999999999664 5678999999999
Q ss_pred cceecceecccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEee
Q psy9646 73 FHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYA 144 (211)
Q Consensus 73 ~~~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~ 144 (211)
+++++..++||+.+.+.+...+...+++|+++......+..+-.|.+.+.+..|.....+|+....+.++.-
T Consensus 456 nr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~lLfHaT~i~~GFQ~TVhiGsvr 527 (591)
T KOG1143|consen 456 NRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANLLLLFHATYICEGFQATVHIGSVR 527 (591)
T ss_pred cccceeeecCccceeeeccCCCccchhcceEEeecCCCCceEEEEeeeehhhhhhHhheecceEEEEEccee
Confidence 999999999999999999988888899999999999889999999999998899999999988887766543
No 112
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.37 E-value=9.8e-13 Score=118.46 Aligned_cols=111 Identities=30% Similarity=0.355 Sum_probs=87.2
Q ss_pred ccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeee----CCceeEeecCCcccccHhHHhhhccccceE
Q psy9646 100 RGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYAT----ENRHYSHTDCPGHADYIKNMITGTSQMDGA 175 (211)
Q Consensus 100 ~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~----~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~ 175 (211)
+..+++-.++...|++++...+..........+++|.++....+.+ .+..++|+|||||+.|...+..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 4444444556667777766555433344445567887766555444 347899999999999999999999999999
Q ss_pred EEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 176 ILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 176 ~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++|+|+.+|+.+|+.+++..++..++| +|+++||+
T Consensus 323 ILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKi 357 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKI 357 (742)
T ss_pred EEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECC
Confidence 999999999999999999999999998 88999996
No 113
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.34 E-value=9.2e-12 Score=110.85 Aligned_cols=105 Identities=27% Similarity=0.396 Sum_probs=90.0
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc---eecc
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH---KILD 78 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~---~~~~ 78 (211)
+|+++|.+.+|+|..+.++||+++|.++++.++.|+++.|||.+|.+++||++.++|++. ..+|++|...+ .+++
T Consensus 174 ~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~--~~~V~~i~~~~~~~~~v~ 251 (600)
T PRK05433 174 EVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGK--EYEVDEVGVFTPKMVPVD 251 (600)
T ss_pred HHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCc--eEEEEEeeccCCCceECc
Confidence 588999888988888889999999999999999999999999999999999999999875 67888988653 6899
Q ss_pred eecccCceehhccCC-Ccccccccccccccch
Q psy9646 79 EAQAGDQLGALVKGM-KRDEVNRGLIMAKPVL 109 (211)
Q Consensus 79 ~a~~G~~v~~~l~~~-~~~~v~~G~ii~~~~~ 109 (211)
++.||| ++..+.++ +..+++.|++++....
T Consensus 252 ~~~aGd-Ig~i~~~ik~~~~~~~Gdtl~~~~~ 282 (600)
T PRK05433 252 ELSAGE-VGYIIAGIKDVRDARVGDTITLAKN 282 (600)
T ss_pred EEcCCC-EEEEecccccccccCCCCEEECCCC
Confidence 999999 55545554 3467999999987543
No 114
>PRK12740 elongation factor G; Reviewed
Probab=99.34 E-value=3.5e-12 Score=115.42 Aligned_cols=90 Identities=33% Similarity=0.553 Sum_probs=84.2
Q ss_pred cccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG 200 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~ 200 (211)
..+|..+.|+.||+|+......+.+.+++++|+|||||.+|..++..++..+|++++++|+.++...++..++..+...+
T Consensus 33 ~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~ 112 (668)
T PRK12740 33 TTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYG 112 (668)
T ss_pred ccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcC
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
+| +++++||+
T Consensus 113 ~p-~iiv~NK~ 122 (668)
T PRK12740 113 VP-RIIFVNKM 122 (668)
T ss_pred CC-EEEEEECC
Confidence 98 67899996
No 115
>PRK13351 elongation factor G; Reviewed
Probab=99.32 E-value=4.4e-12 Score=115.08 Aligned_cols=89 Identities=34% Similarity=0.523 Sum_probs=83.6
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.+|..+.|..|++|+..++..+.+.+.+++|+|||||.+|...+..++..+|++++|+|+.++...++..+++.+...++
T Consensus 47 ~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~ 126 (687)
T PRK13351 47 VTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGI 126 (687)
T ss_pred cCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 46888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
| +++++||+
T Consensus 127 p-~iiviNK~ 135 (687)
T PRK13351 127 P-RLIFINKM 135 (687)
T ss_pred C-EEEEEECC
Confidence 8 67899996
No 116
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.32 E-value=8.5e-12 Score=96.14 Aligned_cols=88 Identities=36% Similarity=0.531 Sum_probs=77.4
Q ss_pred cccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCC
Q psy9646 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVT 202 (211)
Q Consensus 123 ~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
++..+.+..+|.++......+..++.++.++||||+.+|...+...+..+|++++|+|+.++...++..++..+...++|
T Consensus 40 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p 119 (194)
T cd01891 40 MDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK 119 (194)
T ss_pred cccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC
Confidence 45556677888998888888888899999999999999999999999999999999999998888888888888778888
Q ss_pred eEEEEEeCC
Q psy9646 203 NIVVFINKF 211 (211)
Q Consensus 203 ~~i~~inK~ 211 (211)
+++++||+
T Consensus 120 -~iiv~NK~ 127 (194)
T cd01891 120 -PIVVINKI 127 (194)
T ss_pred -EEEEEECC
Confidence 77899996
No 117
>KOG0469|consensus
Probab=99.31 E-value=4.7e-12 Score=107.18 Aligned_cols=91 Identities=26% Similarity=0.365 Sum_probs=81.8
Q ss_pred ccccccchhhcccceEEeEeEEEeee----------------CCceeEeecCCcccccHhHHhhhccccceEEEEEeccC
Q psy9646 120 YADIDNAPEEKARGITINVAHVEYAT----------------ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATD 183 (211)
Q Consensus 120 ~i~~~~~~~e~~rg~tv~~~~~~~~~----------------~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~ 183 (211)
..++|+.+.|.+|++|+..+..++.+ +++.+++||.|||.+|.+++..|++..|++++|||+.+
T Consensus 54 ~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~ 133 (842)
T KOG0469|consen 54 TRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 133 (842)
T ss_pred ccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccC
Confidence 45689999999999999998777543 24669999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 184 GAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+..||+.+++++....++++ +++||+
T Consensus 134 GvCVQTETVLrQA~~ERIkPv-lv~NK~ 160 (842)
T KOG0469|consen 134 GVCVQTETVLRQAIAERIKPV-LVMNKM 160 (842)
T ss_pred ceEechHHHHHHHHHhhccce-EEeehh
Confidence 999999999999998888866 889996
No 118
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.28 E-value=2.1e-11 Score=92.36 Aligned_cols=88 Identities=32% Similarity=0.476 Sum_probs=71.9
Q ss_pred cccchhhcccceEEeEeEEEee-----eCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHH
Q psy9646 123 IDNAPEEKARGITINVAHVEYA-----TENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAK 197 (211)
Q Consensus 123 ~~~~~~e~~rg~tv~~~~~~~~-----~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~ 197 (211)
.+..+.+..+|.+......... ..+.++.|+|||||++|...+..++..+|++++|+|+.++...++...+..+.
T Consensus 37 ~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~ 116 (179)
T cd01890 37 LDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL 116 (179)
T ss_pred ccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH
Confidence 5666677788888776554442 34567889999999999999999999999999999999888777777777777
Q ss_pred HcCCCeEEEEEeCC
Q psy9646 198 QIGVTNIVVFINKF 211 (211)
Q Consensus 198 ~~~~~~~i~~inK~ 211 (211)
..++| +++++||+
T Consensus 117 ~~~~~-iiiv~NK~ 129 (179)
T cd01890 117 ENNLE-IIPVINKI 129 (179)
T ss_pred HcCCC-EEEEEECC
Confidence 77888 78999996
No 119
>KOG0461|consensus
Probab=99.28 E-value=1.3e-11 Score=100.26 Aligned_cols=94 Identities=32% Similarity=0.566 Sum_probs=81.7
Q ss_pred cccccccccchhhcccceEEeEeEEEeeeC---------CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc
Q psy9646 117 VKQYADIDNAPEEKARGITINVAHVEYATE---------NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP 187 (211)
Q Consensus 117 f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~---------~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~ 187 (211)
.......|.+|....||+|+++.+.++... .-|+.++|+|||..++++++.|....|.+++|+|+..|...
T Consensus 30 ~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~Qt 109 (522)
T KOG0461|consen 30 LGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQT 109 (522)
T ss_pred hccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccccc
Confidence 333345799999999999999998887742 35789999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 188 QTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 188 ~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+.+++-+...+..+ .++++||+
T Consensus 110 QtAEcLiig~~~c~k-lvvvinki 132 (522)
T KOG0461|consen 110 QTAECLIIGELLCKK-LVVVINKI 132 (522)
T ss_pred ccchhhhhhhhhccc-eEEEEecc
Confidence 999998888777656 77899996
No 120
>KOG0052|consensus
Probab=99.25 E-value=8e-12 Score=103.19 Aligned_cols=106 Identities=43% Similarity=0.574 Sum_probs=95.7
Q ss_pred ccchhhhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC
Q psy9646 106 KPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA 185 (211)
Q Consensus 106 ~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~ 185 (211)
.+.+...++.+|++.+.++..+.|..|+++++.+...+.+..+.++.+|.|||.+|.++|..+.++||+++++|.+..|.
T Consensus 40 ~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~ge 119 (391)
T KOG0052|consen 40 EKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 119 (391)
T ss_pred chHHHhhccceeeeeeeechhhhccccceEEEEEeecccceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccc
Confidence 34555778889999988999999999999999999999999999999999999999999999999999999999985444
Q ss_pred -------CcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 186 -------MPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 186 -------~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+|+++|+.++..+|++++|+.+||+
T Consensus 120 fEagiskngqt~ehalla~tlgv~qliv~v~k~ 152 (391)
T KOG0052|consen 120 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 152 (391)
T ss_pred eeeeccccchhhhhhhhhccccceeeeEEeecc
Confidence 38999999999999999999999996
No 121
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.21 E-value=1.7e-10 Score=75.65 Aligned_cols=82 Identities=33% Similarity=0.473 Sum_probs=70.9
Q ss_pred eeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceecccCceehhccCCCccccccc
Q psy9646 22 FYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRG 101 (211)
Q Consensus 22 ~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~~G 101 (211)
|+++|.++++.++.|+++.|+|.+|.+++|+.+.+.|.+...+.+|++|+..+.+.+++.+||.+++.+...+ +++.|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~--~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD--DIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc--ccCCC
Confidence 5789999999999999999999999999999999988332457889999999999999999999999776433 78888
Q ss_pred cccc
Q psy9646 102 LIMA 105 (211)
Q Consensus 102 ~ii~ 105 (211)
++++
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 8764
No 122
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.19 E-value=4.9e-11 Score=105.71 Aligned_cols=107 Identities=24% Similarity=0.276 Sum_probs=78.2
Q ss_pred ccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeeeC------------------CceeEeecCCcccccHhHH
Q psy9646 104 MAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATE------------------NRHYSHTDCPGHADYIKNM 165 (211)
Q Consensus 104 i~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~------------------~~~~~~iDtPG~~~~~~~~ 165 (211)
++-.+++..|++++..++..........+++|.++.+..+... ..++.|+|||||+.|...+
T Consensus 7 V~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~ 86 (590)
T TIGR00491 7 VSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLR 86 (590)
T ss_pred EEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHHH
Confidence 3334556667777655553333333333456655443333221 1248899999999999988
Q ss_pred hhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 166 ITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 166 ~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..+++.+|++++|+|+.+|+.+++.+++.++...++| +|+++||+
T Consensus 87 ~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vp-iIVv~NK~ 131 (590)
T TIGR00491 87 KRGGALADLAILIVDINEGFKPQTQEALNILRMYKTP-FVVAANKI 131 (590)
T ss_pred HHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCC-EEEEEECC
Confidence 8999999999999999999999999999999989998 88999996
No 123
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.18 E-value=6.5e-11 Score=105.14 Aligned_cols=61 Identities=34% Similarity=0.413 Sum_probs=57.7
Q ss_pred eEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 150 YSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 150 ~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++|+|||||++|...+..+++.+|++++|+|+.+|+.+++.+++.++...++| +++++||+
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vp-iIvviNK~ 133 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTP-FVVAANKI 133 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECc
Confidence 78999999999998888899999999999999999999999999999999999 88999996
No 124
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.18 E-value=1.3e-10 Score=86.82 Aligned_cols=99 Identities=35% Similarity=0.434 Sum_probs=71.9
Q ss_pred hhhhhcccccccccchhhcccceEEeEeEEEeeeC---CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc
Q psy9646 112 KKLAKVKQYADIDNAPEEKARGITINVAHVEYATE---NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ 188 (211)
Q Consensus 112 ~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~---~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~ 188 (211)
.|++++...+..........++.+.+.....+... +..+.++||||+..|......++..+|++++|+|+.++...+
T Consensus 11 ~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~ 90 (168)
T cd01887 11 HGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQ 90 (168)
T ss_pred CCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHH
Confidence 34444443332222222233455666555555553 678999999999988877777889999999999999888788
Q ss_pred hHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 189 TREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 189 ~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.+.+..+...++| +++++||+
T Consensus 91 ~~~~~~~~~~~~~p-~ivv~NK~ 112 (168)
T cd01887 91 TIEAIKLAKAANVP-FIVALNKI 112 (168)
T ss_pred HHHHHHHHHHcCCC-EEEEEEce
Confidence 88888888888988 77899996
No 125
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.17 E-value=6.5e-11 Score=99.75 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=72.4
Q ss_pred ccceEEeEeEEEeeeCCceeEeecCCcccc---------cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 131 ARGITINVAHVEYATENRHYSHTDCPGHAD---------YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 131 ~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~---------~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
..|.|.+..|...++.+..+.+|||+|... +..++..|+..||+++||||+.+|++++++.+++.++..+.
T Consensus 34 ~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~k 113 (444)
T COG1160 34 TPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKK 113 (444)
T ss_pred CCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 458999999999999999999999999763 35778999999999999999999999999999999998778
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
| +|+|+||+
T Consensus 114 p-viLvvNK~ 122 (444)
T COG1160 114 P-VILVVNKI 122 (444)
T ss_pred C-EEEEEEcc
Confidence 8 88999996
No 126
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.17 E-value=1.3e-10 Score=75.56 Aligned_cols=70 Identities=30% Similarity=0.434 Sum_probs=60.5
Q ss_pred cEEEEEEEEEEEEecCCEEEEeecCce---eeEEEEEEEecceecceecccCceehhccCCCccc-cccccccc
Q psy9646 36 GTVVTGRLERGIVKKGMECEFTGYGRQ---FKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDE-VNRGLIMA 105 (211)
Q Consensus 36 G~v~~G~v~~G~i~~g~~v~i~p~~~~---~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~-v~~G~ii~ 105 (211)
|+++.|||.+|.+++||++.+.|.+.. ...+|++|++++....++.+|+.+++.+...+.++ +++|++++
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 789999999999999999999884322 34999999999988888888888888888778888 89999875
No 127
>KOG1144|consensus
Probab=99.16 E-value=4.6e-11 Score=105.04 Aligned_cols=113 Identities=29% Similarity=0.294 Sum_probs=95.8
Q ss_pred ccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeeeCC------------------ceeEeecCCccc
Q psy9646 98 VNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN------------------RHYSHTDCPGHA 159 (211)
Q Consensus 98 v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~------------------~~~~~iDtPG~~ 159 (211)
--|..++|-.++...+++.+...+.-.+.......|+|..+...+|...+ -.+.+||||||+
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 44667888888888888888776666666677777899888776665431 248899999999
Q ss_pred ccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 160 DYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 160 ~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.|..-..+|.+.+|.+|+|||..+|+.+|+.+.+.+++..+.| +|+++|||
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktp-FivALNKi 602 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTP-FIVALNKI 602 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCC-eEEeehhh
Confidence 9999999999999999999999999999999999999999998 99999996
No 128
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.15 E-value=1.3e-10 Score=108.01 Aligned_cols=96 Identities=27% Similarity=0.330 Sum_probs=79.6
Q ss_pred hhcccccccccchhhcccceEEeEeEEEeeeCC------------------ceeEeecCCcccccHhHHhhhccccceEE
Q psy9646 115 AKVKQYADIDNAPEEKARGITINVAHVEYATEN------------------RHYSHTDCPGHADYIKNMITGTSQMDGAI 176 (211)
Q Consensus 115 ~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~------------------~~~~~iDtPG~~~~~~~~~~~~~~~d~~~ 176 (211)
+++...+.-.+.+.....|+|.++.+..+..+. ..+.|+|||||+.|...+..+...+|+++
T Consensus 475 TtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivl 554 (1049)
T PRK14845 475 TTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAV 554 (1049)
T ss_pred ccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEE
Confidence 344444444455777788999999887776542 13899999999999888888999999999
Q ss_pred EEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 177 LVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 177 ~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+|+.+|+..++.+++..++..++| +|+++||+
T Consensus 555 LVVDa~~Gi~~qT~e~I~~lk~~~iP-iIVViNKi 588 (1049)
T PRK14845 555 LVVDINEGFKPQTIEAINILRQYKTP-FVVAANKI 588 (1049)
T ss_pred EEEECcccCCHhHHHHHHHHHHcCCC-EEEEEECC
Confidence 99999999999999999999999988 88999996
No 129
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=2.8e-10 Score=91.81 Aligned_cols=117 Identities=26% Similarity=0.424 Sum_probs=92.4
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCC--------cEEEEEEEEEEEEecCCEEEEeecCc----------ee
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGR--------GTVVTGRLERGIVKKGMECEFTGYGR----------QF 63 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~--------G~v~~G~v~~G~i~~g~~v~i~p~~~----------~~ 63 (211)
.|+++|.+++|.|+|+.++|++|.|-+.|.++.- |-|..|.+.+|.+++||++.+.|.-. ..
T Consensus 192 al~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi 271 (415)
T COG5257 192 ALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPI 271 (415)
T ss_pred HHHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEe
Confidence 3789999999999999999999999999999864 44899999999999999999998641 23
Q ss_pred eEEEEEEEecceecceecccCceehhccC---CCcccccccccccccchhhhhhhhcc
Q psy9646 64 KTTVTGIEMFHKILDEAQAGDQLGALVKG---MKRDEVNRGLIMAKPVLADKKLAKVK 118 (211)
Q Consensus 64 ~~~v~~i~~~~~~~~~a~~G~~v~~~l~~---~~~~~v~~G~ii~~~~~~~~~~~~f~ 118 (211)
.++|.|++....++++|.+|-.+++-.+- +.+-|--.|.++..+...++...++.
T Consensus 272 ~T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~pG~lPpv~~~~~ 329 (415)
T COG5257 272 TTEIVSLQAGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGKPGTLPPVWTSIR 329 (415)
T ss_pred eEEEEEEEeCCeeeeeccCCceEEEecccCcchhhhhhhccccccCCCCCCCceEEEE
Confidence 47899999999999999999999985441 22344455556655555555444443
No 130
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.12 E-value=3.8e-10 Score=85.80 Aligned_cols=87 Identities=46% Similarity=0.705 Sum_probs=74.2
Q ss_pred ccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCe
Q psy9646 124 DNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTN 203 (211)
Q Consensus 124 ~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~ 203 (211)
+....+..++.++......++..+..+.|+||||+.++......++..+|++++|+|+.++...+..+++..+...+.|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~- 116 (189)
T cd00881 38 DVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP- 116 (189)
T ss_pred cCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-
Confidence 3344566677788777777888888999999999999988888999999999999999998888888888888887877
Q ss_pred EEEEEeCC
Q psy9646 204 IVVFINKF 211 (211)
Q Consensus 204 ~i~~inK~ 211 (211)
+++++||+
T Consensus 117 i~iv~nK~ 124 (189)
T cd00881 117 IIVAINKI 124 (189)
T ss_pred eEEEEECC
Confidence 88999996
No 131
>KOG0462|consensus
Probab=99.09 E-value=2.1e-10 Score=98.17 Aligned_cols=106 Identities=25% Similarity=0.352 Sum_probs=83.2
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc-eeccee
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH-KILDEA 80 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~-~~~~~a 80 (211)
++|+++..++|+|....++||||.+.+.++..|+|.+..++|..|.+++||+|..+-+++...+++.++...+ .++...
T Consensus 225 ~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l 304 (650)
T KOG0462|consen 225 ELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVEL 304 (650)
T ss_pred HHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeee
Confidence 6899999999999999999999999999999999999999999999999999999888764455555555444 244444
Q ss_pred cccCceehhccCCC-cccccccccccccc
Q psy9646 81 QAGDQLGALVKGMK-RDEVNRGLIMAKPV 108 (211)
Q Consensus 81 ~~G~~v~~~l~~~~-~~~v~~G~ii~~~~ 108 (211)
.+|+ |+..+-++. ..+...|++++...
T Consensus 305 ~agq-vGyIi~~mr~~~ea~IGdTi~~~~ 332 (650)
T KOG0462|consen 305 DAGQ-VGYIICNMRNVKEAQIGDTIAHKS 332 (650)
T ss_pred cccc-cceeEecccccccccccceeeecc
Confidence 4444 333333455 56788999998654
No 132
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=99.07 E-value=2.9e-09 Score=69.46 Aligned_cols=77 Identities=25% Similarity=0.381 Sum_probs=62.0
Q ss_pred CCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceecccCceehhccCCCccccc
Q psy9646 20 KPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVN 99 (211)
Q Consensus 20 ~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~ 99 (211)
.|.++.|...|-.+..+ ++.|+|..|.+++|..+ .+. .-..|+||+..++++++|.+||.|++.+.+.. ++.
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G~-~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~ 74 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DGR-KIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIK 74 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CSS-CEEEEEEEEETTEEESEEETT-EEEEEEET----TB-
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CCE-EEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCC
Confidence 46788888888888888 88889999999999998 443 47899999999999999999999999999744 888
Q ss_pred ccccc
Q psy9646 100 RGLIM 104 (211)
Q Consensus 100 ~G~ii 104 (211)
.|+++
T Consensus 75 eGDiL 79 (81)
T PF14578_consen 75 EGDIL 79 (81)
T ss_dssp TT-EE
T ss_pred CCCEE
Confidence 88876
No 133
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.06 E-value=9.9e-10 Score=80.91 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=63.5
Q ss_pred ccceEEeEeEEEeeeCCceeEeecCCcccccH--------hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCC
Q psy9646 131 ARGITINVAHVEYATENRHYSHTDCPGHADYI--------KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVT 202 (211)
Q Consensus 131 ~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~--------~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
..+.+.+..+......+..+.++||||+.++. +.....+..+|++++++|+..+....+..+.+.++..+.|
T Consensus 28 ~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p 107 (157)
T cd01894 28 TPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKP 107 (157)
T ss_pred CCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCC
Confidence 33455555555666677889999999998743 3556678899999999999888877777888888888888
Q ss_pred eEEEEEeCC
Q psy9646 203 NIVVFINKF 211 (211)
Q Consensus 203 ~~i~~inK~ 211 (211)
+++++||+
T Consensus 108 -iiiv~nK~ 115 (157)
T cd01894 108 -VILVVNKV 115 (157)
T ss_pred -EEEEEECc
Confidence 78999996
No 134
>PRK15494 era GTPase Era; Provisional
Probab=98.99 E-value=1.9e-09 Score=90.08 Aligned_cols=102 Identities=10% Similarity=0.075 Sum_probs=70.2
Q ss_pred hhhhhhhhcccccccccch-hhcccceEEeEeEEEeeeCCceeEeecCCcccc--------cHhHHhhhccccceEEEEE
Q psy9646 109 LADKKLAKVKQYADIDNAP-EEKARGITINVAHVEYATENRHYSHTDCPGHAD--------YIKNMITGTSQMDGAILVV 179 (211)
Q Consensus 109 ~~~~~~~~f~~~i~~~~~~-~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~--------~~~~~~~~~~~~d~~~~vv 179 (211)
.+..|++++...+...... .....+.|.+.....++.++.++.|+||||.++ +.+.++.++..+|++++|+
T Consensus 60 ~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~Vv 139 (339)
T PRK15494 60 RPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLII 139 (339)
T ss_pred CCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEE
Confidence 3445555554444222111 112334454444556677889999999999753 4556677889999999999
Q ss_pred eccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 180 AATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 180 d~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+.++....+..++..++..+.| .|+++||+
T Consensus 140 D~~~s~~~~~~~il~~l~~~~~p-~IlViNKi 170 (339)
T PRK15494 140 DSLKSFDDITHNILDKLRSLNIV-PIFLLNKI 170 (339)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCC-EEEEEEhh
Confidence 99888877777788888778888 45799996
No 135
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.98 E-value=4.4e-09 Score=88.95 Aligned_cols=102 Identities=25% Similarity=0.334 Sum_probs=86.9
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc---eecc
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH---KILD 78 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~---~~~~ 78 (211)
++|+++.+.+|+|..+.++|++..|.++++.+|+|.++.-||..|.+++||++.++.+++ +..|..+.++. ...+
T Consensus 176 ~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~--~y~V~evGvftP~~~~~~ 253 (603)
T COG0481 176 DVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGK--EYEVDEVGIFTPKMVKVD 253 (603)
T ss_pred HHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCC--EEEEEEEeeccCCccccc
Confidence 689999999999999999999999999999999999999999999999999999999986 67777877765 4667
Q ss_pred eecccCceehhccCC-Ccccccccccccc
Q psy9646 79 EAQAGDQLGALVKGM-KRDEVNRGLIMAK 106 (211)
Q Consensus 79 ~a~~G~~v~~~l~~~-~~~~v~~G~ii~~ 106 (211)
+..+||.-.+ ..++ +..+.+.||++..
T Consensus 254 ~L~aGeVG~~-~a~iK~v~d~~VGDTiT~ 281 (603)
T COG0481 254 ELKAGEVGYI-IAGIKDVRDARVGDTITL 281 (603)
T ss_pred cccCCceeEE-EEeeeecccCcccceEec
Confidence 8899995444 3333 3567899999974
No 136
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.96 E-value=1.9e-09 Score=92.78 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=68.9
Q ss_pred ccceEEeEeEEEeeeCCceeEeecCCcc--------cccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCC
Q psy9646 131 ARGITINVAHVEYATENRHYSHTDCPGH--------ADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVT 202 (211)
Q Consensus 131 ~rg~tv~~~~~~~~~~~~~~~~iDtPG~--------~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
..|.|.+..+...++.+..+.++||||+ ..+...+..++..+|++++|+|+..+....+.++++.+++.+.|
T Consensus 30 ~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~p 109 (429)
T TIGR03594 30 TPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKP 109 (429)
T ss_pred CCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCC
Confidence 4567777777777888889999999997 34566788889999999999999999999999999999988988
Q ss_pred eEEEEEeCC
Q psy9646 203 NIVVFINKF 211 (211)
Q Consensus 203 ~~i~~inK~ 211 (211)
+++|+||+
T Consensus 110 -iilVvNK~ 117 (429)
T TIGR03594 110 -VILVANKI 117 (429)
T ss_pred -EEEEEECc
Confidence 88999996
No 137
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.94 E-value=3.4e-09 Score=85.92 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=56.2
Q ss_pred eEEeEeEEEeeeCCceeEeecCCcccc--------cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEE
Q psy9646 134 ITINVAHVEYATENRHYSHTDCPGHAD--------YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIV 205 (211)
Q Consensus 134 ~tv~~~~~~~~~~~~~~~~iDtPG~~~--------~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i 205 (211)
.|.......+...+.++.|+||||+++ +.+.+..++..+|++++|+|+....... ..++..++..+.| ++
T Consensus 34 TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p-~i 111 (270)
T TIGR00436 34 TTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRP-VV 111 (270)
T ss_pred cccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCC-EE
Confidence 343333333445677899999999754 3456778889999999999998765443 5677777788888 77
Q ss_pred EEEeCC
Q psy9646 206 VFINKF 211 (211)
Q Consensus 206 ~~inK~ 211 (211)
+++||+
T Consensus 112 lV~NK~ 117 (270)
T TIGR00436 112 LTRNKL 117 (270)
T ss_pred EEEECe
Confidence 999996
No 138
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.93 E-value=4.3e-09 Score=86.94 Aligned_cols=91 Identities=29% Similarity=0.487 Sum_probs=79.2
Q ss_pred ccccccchhhcccceEEeEeEEEeeeCC-----------------------ceeEeecCCcccccHhHHhhhcc--ccce
Q psy9646 120 YADIDNAPEEKARGITINVAHVEYATEN-----------------------RHYSHTDCPGHADYIKNMITGTS--QMDG 174 (211)
Q Consensus 120 ~i~~~~~~~e~~rg~tv~~~~~~~~~~~-----------------------~~~~~iDtPG~~~~~~~~~~~~~--~~d~ 174 (211)
+.+++.++.|..||.|-++++.-|-+.+ .-+.|+||-||+.++++++.|+- ..|+
T Consensus 150 R~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dY 229 (527)
T COG5258 150 RSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDY 229 (527)
T ss_pred hhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccce
Confidence 4456888888889988888876655442 45889999999999999999994 6899
Q ss_pred EEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 175 AILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 175 ~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+++|.|++|++..+++|+-++...+.| +|++++|+
T Consensus 230 glLvVaAddG~~~~tkEHLgi~~a~~lP-viVvvTK~ 265 (527)
T COG5258 230 GLLVVAADDGVTKMTKEHLGIALAMELP-VIVVVTKI 265 (527)
T ss_pred EEEEEEccCCcchhhhHhhhhhhhhcCC-EEEEEEec
Confidence 9999999999999999999999999999 77999996
No 139
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.92 E-value=5.7e-09 Score=90.08 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=76.6
Q ss_pred hhhhhhhhccccccc-ccchhhcccceEEeEeEEEeeeCCceeEeecCCccccc-----------HhHHhhhccccceEE
Q psy9646 109 LADKKLAKVKQYADI-DNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADY-----------IKNMITGTSQMDGAI 176 (211)
Q Consensus 109 ~~~~~~~~f~~~i~~-~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~-----------~~~~~~~~~~~d~~~ 176 (211)
.+..|++++...+.. ........++.|.+.....+...+..+.++||||+.+. ...+..++..+|+++
T Consensus 181 ~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i 260 (435)
T PRK00093 181 RPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVL 260 (435)
T ss_pred CCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEE
Confidence 344555665544321 22233445678888777777788889999999996431 234567888999999
Q ss_pred EEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 177 LVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 177 ~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+|+.++...++..++.++...+.| +|+++||+
T Consensus 261 lViD~~~~~~~~~~~i~~~~~~~~~~-~ivv~NK~ 294 (435)
T PRK00093 261 LVIDATEGITEQDLRIAGLALEAGRA-LVIVVNKW 294 (435)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCc-EEEEEECc
Confidence 99999999999999999999888988 77999996
No 140
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.91 E-value=9.2e-09 Score=76.86 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=69.1
Q ss_pred ccceEEeEeEEEeeeCC-ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC-CCeEEEEE
Q psy9646 131 ARGITINVAHVEYATEN-RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG-VTNIVVFI 208 (211)
Q Consensus 131 ~rg~tv~~~~~~~~~~~-~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~-~~~~i~~i 208 (211)
.|..|+...++..+..+ +.+.+.|||||.+|.-...-..+.+++++++||+..+.....+++++...... +| +++++
T Consensus 50 kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip-~vVa~ 128 (187)
T COG2229 50 KRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIP-VVVAI 128 (187)
T ss_pred ccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCC-EEEEe
Confidence 56789999999988776 89999999999998766666777899999999999998887788888888877 77 88999
Q ss_pred eCC
Q psy9646 209 NKF 211 (211)
Q Consensus 209 nK~ 211 (211)
||.
T Consensus 129 NK~ 131 (187)
T COG2229 129 NKQ 131 (187)
T ss_pred ecc
Confidence 994
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.90 E-value=4.9e-09 Score=77.41 Aligned_cols=97 Identities=15% Similarity=0.086 Sum_probs=62.5
Q ss_pred hhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhH------Hhhhc--cccceEEEEEeccC
Q psy9646 112 KKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKN------MITGT--SQMDGAILVVAATD 183 (211)
Q Consensus 112 ~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~------~~~~~--~~~d~~~~vvd~~~ 183 (211)
.|++++...+.-........++.|.+.....++.++..+.++||||+.++... ....+ ..+|++++|+|+..
T Consensus 7 ~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 86 (158)
T cd01879 7 VGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATN 86 (158)
T ss_pred CCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCc
Confidence 34444444332222222334566776666677777788999999998865421 12222 58999999999976
Q ss_pred CCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 184 GAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
. ......+..+...++| +++++||+
T Consensus 87 ~--~~~~~~~~~~~~~~~~-~iiv~NK~ 111 (158)
T cd01879 87 L--ERNLYLTLQLLELGLP-VVVALNMI 111 (158)
T ss_pred c--hhHHHHHHHHHHcCCC-EEEEEehh
Confidence 3 2334455566778888 77999995
No 142
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.88 E-value=7.1e-09 Score=89.49 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=65.5
Q ss_pred cceEEeEeEEEeeeCCceeEeecCCcccc--------cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCe
Q psy9646 132 RGITINVAHVEYATENRHYSHTDCPGHAD--------YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTN 203 (211)
Q Consensus 132 rg~tv~~~~~~~~~~~~~~~~iDtPG~~~--------~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~ 203 (211)
.+.|.+..+....+.+..+.++||||+.+ +...+..++..+|++++|+|+..+....+.++.++++..+.|
T Consensus 33 ~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~p- 111 (435)
T PRK00093 33 PGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKP- 111 (435)
T ss_pred CCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCc-
Confidence 45566666666777788999999999987 344466788999999999999999888888888999888988
Q ss_pred EEEEEeCC
Q psy9646 204 IVVFINKF 211 (211)
Q Consensus 204 ~i~~inK~ 211 (211)
+|+++||+
T Consensus 112 iilv~NK~ 119 (435)
T PRK00093 112 VILVVNKV 119 (435)
T ss_pred EEEEEECc
Confidence 88999996
No 143
>PRK00089 era GTPase Era; Reviewed
Probab=98.86 E-value=1e-08 Score=83.99 Aligned_cols=68 Identities=19% Similarity=0.270 Sum_probs=55.8
Q ss_pred eeeCCceeEeecCCcccc--------cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 143 YATENRHYSHTDCPGHAD--------YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 143 ~~~~~~~~~~iDtPG~~~--------~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+..++.++.|+||||+++ +...+..++..+|++++|+|+.++....+..+++.+...+.| +++++||+
T Consensus 48 ~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~p-vilVlNKi 123 (292)
T PRK00089 48 VTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTP-VILVLNKI 123 (292)
T ss_pred EEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCC-EEEEEECC
Confidence 334568999999999754 356677888999999999999987777778888888877788 77999996
No 144
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.86 E-value=7.5e-09 Score=89.15 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=75.0
Q ss_pred hhhhhhhcccccccc-cchhhcccceEEeEeEEEeeeCCceeEeecCCcccccH-----------hHHhhhccccceEEE
Q psy9646 110 ADKKLAKVKQYADID-NAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYI-----------KNMITGTSQMDGAIL 177 (211)
Q Consensus 110 ~~~~~~~f~~~i~~~-~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~-----------~~~~~~~~~~d~~~~ 177 (211)
+..|++++...+... ........+.|.+.....++..+..+.++||||+.++. ..+..++..+|++++
T Consensus 181 ~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~il 260 (429)
T TIGR03594 181 PNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLL 260 (429)
T ss_pred CCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEE
Confidence 344555554444322 12234456777777777777788899999999975432 234567889999999
Q ss_pred EEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 178 VVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 178 vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+|+.++...++.+++..+...+.| +|+++||+
T Consensus 261 V~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~ 293 (429)
T TIGR03594 261 VLDATEGITEQDLRIAGLILEAGKA-LVIVVNKW 293 (429)
T ss_pred EEECCCCccHHHHHHHHHHHHcCCc-EEEEEECc
Confidence 9999999999999999999888888 88999996
No 145
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.85 E-value=6.6e-09 Score=73.30 Aligned_cols=98 Identities=20% Similarity=0.215 Sum_probs=66.4
Q ss_pred hhhhhhcccccccc-cchhhcccceEEeEeEEEeeeCCceeEeecCCcccc---------cHhHHhhhccccceEEEEEe
Q psy9646 111 DKKLAKVKQYADID-NAPEEKARGITINVAHVEYATENRHYSHTDCPGHAD---------YIKNMITGTSQMDGAILVVA 180 (211)
Q Consensus 111 ~~~~~~f~~~i~~~-~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~---------~~~~~~~~~~~~d~~~~vvd 180 (211)
..|++++...+.-. ........+.|....+..++..+..+.|+||||..+ ........+..+|++++|+|
T Consensus 9 ~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~ 88 (116)
T PF01926_consen 9 NVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVD 88 (116)
T ss_dssp TSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEE
T ss_pred CCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEE
Confidence 34555554444321 123333445565655666777888999999999643 34456777789999999999
Q ss_pred ccCCCCcchHHHHHHHHHcCCCeEEEEEeC
Q psy9646 181 ATDGAMPQTREHLLLAKQIGVTNIVVFINK 210 (211)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~i~~inK 210 (211)
+..........+++.++ .+.| +++|+||
T Consensus 89 ~~~~~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 89 ASNPITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp TTSHSHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred CCCCCCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 87744455667777775 5666 8899999
No 146
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.85 E-value=6.8e-09 Score=76.98 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=67.5
Q ss_pred hhhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccH------hHHhhh--ccccceEEEEEec
Q psy9646 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYI------KNMITG--TSQMDGAILVVAA 181 (211)
Q Consensus 110 ~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~------~~~~~~--~~~~d~~~~vvd~ 181 (211)
|..|++.+-..+.-.+.....-.|.|++...+.+...+.++.|+|+||...+. +-+... ....|++++|+||
T Consensus 9 PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa 88 (156)
T PF02421_consen 9 PNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDA 88 (156)
T ss_dssp TTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEG
T ss_pred CCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCC
Confidence 44555555444433334444557899999999999999999999999955431 112222 2589999999999
Q ss_pred cCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 182 TDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.. ...+..++.++.++|+| +++++||+
T Consensus 89 ~~--l~r~l~l~~ql~e~g~P-~vvvlN~~ 115 (156)
T PF02421_consen 89 TN--LERNLYLTLQLLELGIP-VVVVLNKM 115 (156)
T ss_dssp GG--HHHHHHHHHHHHHTTSS-EEEEEETH
T ss_pred CC--HHHHHHHHHHHHHcCCC-EEEEEeCH
Confidence 76 35556677888899999 88999995
No 147
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.85 E-value=2.6e-08 Score=66.48 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=64.0
Q ss_pred CCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc----eecceecccCceehhccCCC
Q psy9646 19 DKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH----KILDEAQAGDQLGALVKGMK 94 (211)
Q Consensus 19 ~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~ 94 (211)
++||.+.|..+.+.++.|++..+||-+|.++.|+.+.... + .+.++.+|...+ .++++|.|||++++ ..
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai----~g 73 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-E--EKIKITELRVFNNGEVVTADTVTAGDIAIL----TG 73 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-C--cEEEeceeEEEeCCCeEECcEECCCCEEEE----EC
Confidence 4689999999999999999999999999999999997644 2 244566775554 58899999999987 23
Q ss_pred ccccccccccc
Q psy9646 95 RDEVNRGLIMA 105 (211)
Q Consensus 95 ~~~v~~G~ii~ 105 (211)
..++..|++++
T Consensus 74 l~~~~~Gdtl~ 84 (85)
T cd03690 74 LKGLRVGDVLG 84 (85)
T ss_pred CCCCcCccccC
Confidence 45677887764
No 148
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.84 E-value=1.4e-08 Score=88.65 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=76.2
Q ss_pred chhhhhhhhccccccccc-chhhcccceEEeEeEEEeeeCCceeEeecCCcccc--------cHhHHhhhccccceEEEE
Q psy9646 108 VLADKKLAKVKQYADIDN-APEEKARGITINVAHVEYATENRHYSHTDCPGHAD--------YIKNMITGTSQMDGAILV 178 (211)
Q Consensus 108 ~~~~~~~~~f~~~i~~~~-~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~--------~~~~~~~~~~~~d~~~~v 178 (211)
+.+..|++++..++.-.. .......|.|.+..+...++.+..+.++||||+.. +...+..++..+|++++|
T Consensus 45 G~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~V 124 (472)
T PRK03003 45 GRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFV 124 (472)
T ss_pred cCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEE
Confidence 334456666554443211 12234556777777777778888999999999763 445566788999999999
Q ss_pred EeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 179 VAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 179 vd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+..+....+..++..++..+.| +|+|+||+
T Consensus 125 vD~~~~~s~~~~~i~~~l~~~~~p-iilV~NK~ 156 (472)
T PRK03003 125 VDATVGATATDEAVARVLRRSGKP-VILAANKV 156 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHcCCC-EEEEEECc
Confidence 999999887778888888888888 88999996
No 149
>KOG0466|consensus
Probab=98.84 E-value=2.9e-09 Score=85.53 Aligned_cols=90 Identities=32% Similarity=0.548 Sum_probs=75.0
Q ss_pred ccccchhhcccceEEeEeEEEeee---C----------------------------------CceeEeecCCcccccHhH
Q psy9646 122 DIDNAPEEKARGITINVAHVEYAT---E----------------------------------NRHYSHTDCPGHADYIKN 164 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~---~----------------------------------~~~~~~iDtPG~~~~~~~ 164 (211)
.+...+.|..|++|+.+.|..... + -+++.|+|+|||.-++.+
T Consensus 62 ~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaT 141 (466)
T KOG0466|consen 62 HTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMAT 141 (466)
T ss_pred eEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHH
Confidence 356677788888888887655331 0 046899999999999999
Q ss_pred HhhhccccceEEEEEeccCC-CCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 165 MITGTSQMDGAILVVAATDG-AMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 165 ~~~~~~~~d~~~~vvd~~~~-~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+.|.+..|++++++.+++. +.+||.+|+....-...++++++-||+
T Consensus 142 MLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKi 189 (466)
T KOG0466|consen 142 MLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKI 189 (466)
T ss_pred HhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechh
Confidence 99999999999999999865 679999999988888999999999996
No 150
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.83 E-value=3.1e-08 Score=84.12 Aligned_cols=164 Identities=9% Similarity=0.053 Sum_probs=93.5
Q ss_pred EEEEEEEEecCCEEEEeecCcee---eEEEEEEEecceecceecccCceehhccCCCcccccccccccccchhhhhhhhc
Q psy9646 41 GRLERGIVKKGMECEFTGYGRQF---KTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKV 117 (211)
Q Consensus 41 G~v~~G~i~~g~~v~i~p~~~~~---~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f 117 (211)
|++..--.+.|+++.++..|.-- ..-.++........+...+|+...+.|. +. .-...+. -..+..+++++
T Consensus 102 ~~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~~~~~~p~~~~~g~~g~~~~~~le-lk-~iadVal----VG~PNaGKSTL 175 (390)
T PRK12298 102 GEVIGDLTEHGQRLLVAKGGWHGLGNTRFKSSVNRAPRQKTPGTPGEERELKLE-LK-LLADVGL----LGLPNAGKSTF 175 (390)
T ss_pred CcEEEEeccCCcEEEEecCCCCccchhhhccCccCCCcccCCCCCCceEEEEEe-ee-ccccEEE----EcCCCCCHHHH
Confidence 45555566788888886655200 0111122222233445667777666444 11 0011111 23345566666
Q ss_pred ccccccccchhhcccceEEeEeEEEeeeCCc-eeEeecCCcccc-------cHhHHhhhccccceEEEEEeccC----CC
Q psy9646 118 KQYADIDNAPEEKARGITINVAHVEYATENR-HYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATD----GA 185 (211)
Q Consensus 118 ~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~-~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~----~~ 185 (211)
...+.-...........|.......+...+. +++|+||||..+ +...+...++.+|++++|+|+.. ..
T Consensus 176 ln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~ 255 (390)
T PRK12298 176 IRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDP 255 (390)
T ss_pred HHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccCh
Confidence 5555322223333445676667777777654 599999999753 45567788999999999999862 22
Q ss_pred CcchHHHHHHHHHc-----CCCeEEEEEeCC
Q psy9646 186 MPQTREHLLLAKQI-----GVTNIVVFINKF 211 (211)
Q Consensus 186 ~~~~~~~~~~~~~~-----~~~~~i~~inK~ 211 (211)
..+...+.+.+... +.| +|+++||+
T Consensus 256 ~e~~~~l~~eL~~~~~~L~~kP-~IlVlNKi 285 (390)
T PRK12298 256 VENARIIINELEKYSPKLAEKP-RWLVFNKI 285 (390)
T ss_pred HHHHHHHHHHHHhhhhhhcCCC-EEEEEeCC
Confidence 23334455555543 466 77899996
No 151
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.80 E-value=2.3e-08 Score=91.29 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=77.2
Q ss_pred hhhhhhhhcccccccc-cchhhcccceEEeEeEEEeeeCCceeEeecCCcccc--------cHhHHhhhccccceEEEEE
Q psy9646 109 LADKKLAKVKQYADID-NAPEEKARGITINVAHVEYATENRHYSHTDCPGHAD--------YIKNMITGTSQMDGAILVV 179 (211)
Q Consensus 109 ~~~~~~~~f~~~i~~~-~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~--------~~~~~~~~~~~~d~~~~vv 179 (211)
.+..|++++...+.-. ....+...|.|.+..+...++.+.++.++||||+.. +..++..++..+|++++|+
T Consensus 283 ~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~Vv 362 (712)
T PRK09518 283 RPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVV 362 (712)
T ss_pred CCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEE
Confidence 3445666654433211 112233557777777777788888999999999763 5667778899999999999
Q ss_pred eccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 180 AATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 180 d~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+.++....+..+++.++..+.| +|+|+||+
T Consensus 363 Da~~~~~~~d~~i~~~Lr~~~~p-vIlV~NK~ 393 (712)
T PRK09518 363 DGQVGLTSTDERIVRMLRRAGKP-VVLAVNKI 393 (712)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCC-EEEEEECc
Confidence 99999988888898999888988 88999996
No 152
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.78 E-value=3.3e-08 Score=73.75 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=59.0
Q ss_pred cceEEeEeEEEeeeCCceeEeecCCcccccH-----------hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC
Q psy9646 132 RGITINVAHVEYATENRHYSHTDCPGHADYI-----------KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG 200 (211)
Q Consensus 132 rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~-----------~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~ 200 (211)
++.+.......+...+..+.++||||+.++. ..+...+..+|++++|+|+..+...+...+++.+...+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~ 113 (174)
T cd01895 34 AGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEG 113 (174)
T ss_pred CCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcC
Confidence 3444444445556677789999999975431 23455678999999999999888877777778877778
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
.| +++++||+
T Consensus 114 ~~-~iiv~nK~ 123 (174)
T cd01895 114 KA-LVIVVNKW 123 (174)
T ss_pred CC-EEEEEecc
Confidence 77 77899996
No 153
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.77 E-value=2.1e-07 Score=82.85 Aligned_cols=97 Identities=21% Similarity=0.140 Sum_probs=75.0
Q ss_pred hHHHHHhhh--CCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEec-ceecc
Q psy9646 2 ELLNQIDTY--IPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMF-HKILD 78 (211)
Q Consensus 2 ~ll~~l~~~--i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~-~~~~~ 78 (211)
+|+++|... +..+..+.+.|++++|.+++..++.|++++|+|.+|++++||.+.+.|. ..+|++++.. .+.++
T Consensus 240 eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~----~~kVr~l~~~~g~~v~ 315 (587)
T TIGR00487 240 ELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAA----YGRVRAMIDENGKSVK 315 (587)
T ss_pred HHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCC----ccEEEEEECCCCCCCC
Confidence 355555331 2223345668999999999999999999999999999999999999885 5789999984 47899
Q ss_pred eecccCceehhccCCCcccc-cccccccc
Q psy9646 79 EAQAGDQLGALVKGMKRDEV-NRGLIMAK 106 (211)
Q Consensus 79 ~a~~G~~v~~~l~~~~~~~v-~~G~ii~~ 106 (211)
+|.||+.|.+. ++ .++ ..|+.+..
T Consensus 316 ~a~~g~~v~i~--Gl--~~~p~aGd~~~~ 340 (587)
T TIGR00487 316 EAGPSKPVEIL--GL--SDVPAAGDEFIV 340 (587)
T ss_pred EECCCCEEEEe--CC--CCCCCCCCEEEE
Confidence 99999999863 32 233 66877763
No 154
>PRK09866 hypothetical protein; Provisional
Probab=98.76 E-value=1.9e-08 Score=88.69 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=55.3
Q ss_pred CceeEeecCCcccc-----cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC--CeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHAD-----YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV--TNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~-----~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~--~~~i~~inK~ 211 (211)
..|++|+||||.+. +.+.|..++..+|+++||+|+..+....++.+++.++..+. | +|+++||+
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~P-VILVVNKI 299 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVP-LYVLVNKF 299 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCC-EEEEEEcc
Confidence 47999999999754 45668889999999999999998888888899999988774 6 88999996
No 155
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.76 E-value=1.1e-07 Score=63.47 Aligned_cols=80 Identities=25% Similarity=0.326 Sum_probs=61.6
Q ss_pred eeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeec-CceeeEEEEEEEecc----eecceecccCceehhccCCCcc
Q psy9646 22 FYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGY-GRQFKTTVTGIEMFH----KILDEAQAGDQLGALVKGMKRD 96 (211)
Q Consensus 22 ~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~-~~~~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~~~ 96 (211)
|+|.|..+...++.|++..+||.+|.+++||+|.+... ++..+.+|.++.... .+++++.|||.+.+ .+ ..
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i--~g--l~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAI--AG--IE 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEE--EC--CC
Confidence 68899999999999999999999999999999987554 212245677774333 68999999999865 33 34
Q ss_pred ccccccccc
Q psy9646 97 EVNRGLIMA 105 (211)
Q Consensus 97 ~v~~G~ii~ 105 (211)
++..|++++
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 677887764
No 156
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.74 E-value=7.5e-08 Score=87.95 Aligned_cols=101 Identities=23% Similarity=0.379 Sum_probs=81.8
Q ss_pred hHHHHHhhhCCCCCC-------------------------CCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEE
Q psy9646 2 ELLNQIDTYIPQPVR-------------------------DLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEF 56 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~-------------------------~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i 56 (211)
.||++|..++|.|.. +.++||...|..+...++.|++..|||.+|.+++||.|.+
T Consensus 245 ~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~ 324 (720)
T TIGR00490 245 VVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYI 324 (720)
T ss_pred HHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEE
Confidence 478899888887731 2256899999999988999999999999999999999999
Q ss_pred eecCceeeEEEEEEEecc----eecceecccCceehhccCCCcccccccccccccc
Q psy9646 57 TGYGRQFKTTVTGIEMFH----KILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPV 108 (211)
Q Consensus 57 ~p~~~~~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~ 108 (211)
.+.+. +.+|..|.... .++++|.|||++++ .+ ..++.+|++++...
T Consensus 325 ~~~~~--~~kv~~l~~~~g~~~~~v~~a~aGdIv~i--~g--l~~~~~GdtL~~~~ 374 (720)
T TIGR00490 325 VDRKA--KARIQQVGVYMGPERVEVDEIPAGNIVAV--IG--LKDAVAGETICTTV 374 (720)
T ss_pred cCCCC--eeEeeEEEEeccCCccCccEECCCCEEEE--EC--ccccccCceeecCC
Confidence 88864 67788887653 58999999999987 33 33667899987543
No 157
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.73 E-value=8.2e-08 Score=63.76 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=59.8
Q ss_pred eEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc----eecceecccCceehhccCCCcccc
Q psy9646 23 YLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH----KILDEAQAGDQLGALVKGMKRDEV 98 (211)
Q Consensus 23 ~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v 98 (211)
...|..++..++.|.+..+||.+|.+++||.|.....++ +.++.+|...+ .++++|.|||++.+ .+ .+++
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g--l~~~ 75 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGK--KERISRLLQPFADQYQEIPSLSAGNIGVI--TG--LKQT 75 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCC--EEEeeEEEEEECCCceECCeeCCCCEEEE--EC--CCCc
Confidence 345667777788999999999999999999998765543 45666775443 68999999999986 33 3568
Q ss_pred ccccccc
Q psy9646 99 NRGLIMA 105 (211)
Q Consensus 99 ~~G~ii~ 105 (211)
..|++++
T Consensus 76 ~~Gdtl~ 82 (83)
T cd04092 76 RTGDTLV 82 (83)
T ss_pred ccCCEEe
Confidence 8888876
No 158
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.72 E-value=6.9e-08 Score=88.38 Aligned_cols=100 Identities=24% Similarity=0.441 Sum_probs=81.5
Q ss_pred hHHHHHhhhCCCCCC-------------------------CCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEE
Q psy9646 2 ELLNQIDTYIPQPVR-------------------------DLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEF 56 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~-------------------------~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i 56 (211)
.||+++.+++|.|.. +.++||.+.|..++..++.|++..|||.+|++++||.|.+
T Consensus 246 ~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~ 325 (731)
T PRK07560 246 VVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYL 325 (731)
T ss_pred HHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEE
Confidence 588999998887741 2356899999999999999999999999999999999999
Q ss_pred eecCceeeEEEEEEEec----ceecceecccCceehhccCCCccccccccccccc
Q psy9646 57 TGYGRQFKTTVTGIEMF----HKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107 (211)
Q Consensus 57 ~p~~~~~~~~v~~i~~~----~~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~ 107 (211)
.+.+. +.+|.+|... ..++++|.|||++++ .+ ..+...|++++..
T Consensus 326 ~~~~~--~~~v~~i~~~~g~~~~~v~~a~AGdIv~i--~g--l~~~~~GdtL~~~ 374 (731)
T PRK07560 326 VGAKK--KNRVQQVGIYMGPEREEVEEIPAGNIAAV--TG--LKDARAGETVVSV 374 (731)
T ss_pred cCCCC--ceEeheehhhhcCCCceeeeECCCCEEEE--Ec--ccccccCCEEeCC
Confidence 88764 5678888655 368999999999997 23 3456789888754
No 159
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.71 E-value=4.9e-08 Score=82.60 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=79.3
Q ss_pred hhhhhhhcccccccc-cchhhcccceEEeEeEEEeeeCCceeEeecCCcccc----------c-HhHHhhhccccceEEE
Q psy9646 110 ADKKLAKVKQYADID-NAPEEKARGITINVAHVEYATENRHYSHTDCPGHAD----------Y-IKNMITGTSQMDGAIL 177 (211)
Q Consensus 110 ~~~~~~~f~~~i~~~-~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~----------~-~~~~~~~~~~~d~~~~ 177 (211)
|..+++++...+.-. ..=.....|+|.+.-...+++++..+.++||.|.+. | +..+..++..+|.+++
T Consensus 187 PNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvll 266 (444)
T COG1160 187 PNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLL 266 (444)
T ss_pred CCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEE
Confidence 344555554444211 112233557899988999999999999999999653 2 3557789999999999
Q ss_pred EEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 178 VVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 178 vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+||.+|...|+..++.++.+.|.+ +|+++||.
T Consensus 267 viDa~~~~~~qD~~ia~~i~~~g~~-~vIvvNKW 299 (444)
T COG1160 267 VIDATEGISEQDLRIAGLIEEAGRG-IVIVVNKW 299 (444)
T ss_pred EEECCCCchHHHHHHHHHHHHcCCC-eEEEEEcc
Confidence 9999999999999999999999988 77899995
No 160
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.69 E-value=1.5e-07 Score=62.46 Aligned_cols=77 Identities=25% Similarity=0.233 Sum_probs=60.0
Q ss_pred eEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc----eecceecccCceehhccCCCcccc
Q psy9646 23 YLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH----KILDEAQAGDQLGALVKGMKRDEV 98 (211)
Q Consensus 23 ~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v 98 (211)
...|..+.+.++.|++..+||.+|.+++||.+.....++ ..++.+|.... .+++++.|||++.+ .+ ..++
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g--~~~~ 75 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGK--KERVGRLLRMHGKKQEEVEEAGAGDIGAV--AG--LKDT 75 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCc--EEEeeEEEEEcCCCceECCEeCCCCEEEE--EC--CCCC
Confidence 345677777788999999999999999999998876543 55677775443 68899999999987 33 3457
Q ss_pred ccccccc
Q psy9646 99 NRGLIMA 105 (211)
Q Consensus 99 ~~G~ii~ 105 (211)
+.|++++
T Consensus 76 ~~Gdtl~ 82 (83)
T cd04088 76 ATGDTLC 82 (83)
T ss_pred ccCCEee
Confidence 7888764
No 161
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.68 E-value=1.9e-07 Score=62.40 Aligned_cols=81 Identities=22% Similarity=0.321 Sum_probs=61.2
Q ss_pred eeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc---eecceecccCceehhccCC-Cccc
Q psy9646 22 FYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH---KILDEAQAGDQLGALVKGM-KRDE 97 (211)
Q Consensus 22 ~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~---~~~~~a~~G~~v~~~l~~~-~~~~ 97 (211)
|.+.|..+.+.++.|++..+||.+|.++.|+.+.....++ +.++..+.... .+++++.|||++.+. .++ +..+
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~--~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~ 77 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGK--EYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKD 77 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCC--eEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCc
Confidence 5788889999999999999999999999999998765543 44555665433 578999999998772 111 2345
Q ss_pred cccccccc
Q psy9646 98 VNRGLIMA 105 (211)
Q Consensus 98 v~~G~ii~ 105 (211)
+..|++++
T Consensus 78 ~~~Gdtl~ 85 (86)
T cd03699 78 ARVGDTIT 85 (86)
T ss_pred cccccEee
Confidence 77888775
No 162
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.67 E-value=9.8e-08 Score=70.07 Aligned_cols=77 Identities=21% Similarity=0.188 Sum_probs=54.5
Q ss_pred cceEEeEeEEEeeeCCceeEeecCCcccccHh--------HHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCe
Q psy9646 132 RGITINVAHVEYATENRHYSHTDCPGHADYIK--------NMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTN 203 (211)
Q Consensus 132 rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~--------~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~ 203 (211)
.+.+.......+...+..+.++||||+.++.. .+...+..+|++++|+|+...........+.. ..+.|
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~- 109 (157)
T cd04164 33 AGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKP- 109 (157)
T ss_pred CCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCC-
Confidence 34555555555666777899999999876532 35567789999999999987665555444333 34566
Q ss_pred EEEEEeCC
Q psy9646 204 IVVFINKF 211 (211)
Q Consensus 204 ~i~~inK~ 211 (211)
+++++||+
T Consensus 110 vi~v~nK~ 117 (157)
T cd04164 110 IIVVLNKS 117 (157)
T ss_pred EEEEEEch
Confidence 88999995
No 163
>PRK12740 elongation factor G; Reviewed
Probab=98.65 E-value=1.7e-07 Score=85.18 Aligned_cols=100 Identities=28% Similarity=0.397 Sum_probs=79.4
Q ss_pred hHHHHHhhhCCCCCC-----------------CCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceee
Q psy9646 2 ELLNQIDTYIPQPVR-----------------DLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFK 64 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~-----------------~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~ 64 (211)
.||++|..++|.|.. +.++|+.+.|..++..++.|++..+||.+|.+++||+|.+.+.++ +
T Consensus 252 ~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~~v~~~~~~~--~ 329 (668)
T PRK12740 252 RLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGDTLYNSGTGK--K 329 (668)
T ss_pred HHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCC--c
Confidence 489999998887742 346789999999999999999999999999999999999887653 3
Q ss_pred EEEEEEEec----ceecceecccCceehhccCCCccccccccccccc
Q psy9646 65 TTVTGIEMF----HKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107 (211)
Q Consensus 65 ~~v~~i~~~----~~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~ 107 (211)
.++.+|... ..++++|.|||++++. ++ ..+..|++++..
T Consensus 330 ~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--gl--~~~~~Gdtl~~~ 372 (668)
T PRK12740 330 ERVGRLYRMHGKQREEVDEAVAGDIVAVA--KL--KDAATGDTLCDK 372 (668)
T ss_pred EEecceeeecCCCccccCccCCCCEEEEe--cc--CccCCCCEEeCC
Confidence 444455432 3689999999999974 33 357899988643
No 164
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.64 E-value=1.1e-07 Score=75.16 Aligned_cols=64 Identities=20% Similarity=0.325 Sum_probs=55.8
Q ss_pred eCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 145 TENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 145 ~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..+.+++|+||||+. ..+..++..+|++++++|+..+...++..++..+...+.|.+|+++||+
T Consensus 80 ~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~ 143 (225)
T cd01882 80 GKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHL 143 (225)
T ss_pred cCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEecc
Confidence 367889999999964 6677788999999999999999999999999999889999666699996
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.64 E-value=9.8e-08 Score=83.30 Aligned_cols=102 Identities=13% Similarity=0.204 Sum_probs=72.6
Q ss_pred hhhhhhhhcccccccccc-hhhcccceEEeEeEEEeeeCCceeEeecCCccc---------ccHhH--HhhhccccceEE
Q psy9646 109 LADKKLAKVKQYADIDNA-PEEKARGITINVAHVEYATENRHYSHTDCPGHA---------DYIKN--MITGTSQMDGAI 176 (211)
Q Consensus 109 ~~~~~~~~f~~~i~~~~~-~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~---------~~~~~--~~~~~~~~d~~~ 176 (211)
.+..|++++...+..... ......++|.+.....++..+..+.++||||.. ++... ...++..+|+++
T Consensus 219 ~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vi 298 (472)
T PRK03003 219 KPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAV 298 (472)
T ss_pred CCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEE
Confidence 344556665544432221 233455677766666677788889999999963 22222 234678999999
Q ss_pred EEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 177 LVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 177 ~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+|+.++...++..++..+...+.| +|+|+||+
T Consensus 299 lV~Da~~~~s~~~~~~~~~~~~~~~p-iIiV~NK~ 332 (472)
T PRK03003 299 VLIDASEPISEQDQRVLSMVIEAGRA-LVLAFNKW 332 (472)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECc
Confidence 99999999998888888888888888 88999996
No 166
>PRK13351 elongation factor G; Reviewed
Probab=98.64 E-value=2.9e-07 Score=83.91 Aligned_cols=100 Identities=24% Similarity=0.366 Sum_probs=78.8
Q ss_pred hHHHHHhhhCCCCCC------------------CCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCcee
Q psy9646 2 ELLNQIDTYIPQPVR------------------DLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQF 63 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~------------------~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~ 63 (211)
.||++|..++|.|.. +.++|+.+.|..++..++.|++..+||.+|+++.||+|.+.+.+.
T Consensus 268 ~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~-- 345 (687)
T PRK13351 268 PLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGK-- 345 (687)
T ss_pred HHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCCC--
Confidence 489999999987742 346799999999999999999999999999999999999877653
Q ss_pred eEEEEEEEec----ceecceecccCceehhccCCCccccccccccccc
Q psy9646 64 KTTVTGIEMF----HKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107 (211)
Q Consensus 64 ~~~v~~i~~~----~~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~ 107 (211)
+.++.+|... ..++++|.|||++++ .+ ..+...|++++..
T Consensus 346 ~~~i~~i~~~~g~~~~~v~~~~aGdI~~i--~g--l~~~~~gdtl~~~ 389 (687)
T PRK13351 346 REKVGRLFRLQGNKREEVDRAKAGDIVAV--AG--LKELETGDTLHDS 389 (687)
T ss_pred ceEeeeEEEEccCCeeECCccCCCCEEEE--EC--cccCccCCEEeCC
Confidence 4555565443 268999999999876 33 2345678888654
No 167
>KOG1143|consensus
Probab=98.62 E-value=6.5e-08 Score=79.89 Aligned_cols=93 Identities=29% Similarity=0.380 Sum_probs=75.9
Q ss_pred ccccccccchhhcccceEEeEeEEEeeeC---------------------CceeEeecCCcccccHhHHhhhccc--cce
Q psy9646 118 KQYADIDNAPEEKARGITINVAHVEYATE---------------------NRHYSHTDCPGHADYIKNMITGTSQ--MDG 174 (211)
Q Consensus 118 ~~~i~~~~~~~e~~rg~tv~~~~~~~~~~---------------------~~~~~~iDtPG~~~~~~~~~~~~~~--~d~ 174 (211)
++++-+..++.|++.|.|-.+++-.+-++ ..-++|||-.||++|++..+.|+.. .|+
T Consensus 198 rARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~ 277 (591)
T KOG1143|consen 198 RARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHF 277 (591)
T ss_pred eeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCce
Confidence 45566778888887776655543322211 1458999999999999999999986 489
Q ss_pred EEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 175 AILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 175 ~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++++|.|..|+...+++|+.++..+++| ++++++|+
T Consensus 278 A~LvVsA~~Gi~~tTrEHLgl~~AL~iP-fFvlvtK~ 313 (591)
T KOG1143|consen 278 ACLVVSADRGITWTTREHLGLIAALNIP-FFVLVTKM 313 (591)
T ss_pred EEEEEEcCCCCccccHHHHHHHHHhCCC-eEEEEEee
Confidence 9999999999999999999999999999 88899996
No 168
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.60 E-value=1.9e-07 Score=69.70 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=61.1
Q ss_pred hhhhhhcccccccccchhhcccceEEeEeEEEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc
Q psy9646 111 DKKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ 188 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~ 188 (211)
..|++++..++.......+.......+.....+...+ .++.+.||||+..|.......+..+|++++++|+.....-+
T Consensus 13 ~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~ 92 (165)
T cd01864 13 NVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFE 92 (165)
T ss_pred CCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHH
Confidence 3455555444322222222222222333334444454 47889999999998887778888999999999997664322
Q ss_pred h-HHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 189 T-REHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 189 ~-~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
. +.++..+.. .++| +|++.||+
T Consensus 93 ~~~~~~~~i~~~~~~~~p-~ivv~nK~ 118 (165)
T cd01864 93 SVPHWIEEVEKYGASNVV-LLLIGNKC 118 (165)
T ss_pred hHHHHHHHHHHhCCCCCc-EEEEEECc
Confidence 2 334444433 3566 77899996
No 169
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.60 E-value=2.5e-07 Score=70.23 Aligned_cols=63 Identities=14% Similarity=0.323 Sum_probs=48.6
Q ss_pred ceeEeecCCccc----------ccH---hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHA----------DYI---KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~----------~~~---~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.++||||+. ++. ...+.....+|++++|+|+..+....+.++++.+...+.| +++++||+
T Consensus 64 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~ 139 (179)
T TIGR03598 64 DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIP-VLIVLTKA 139 (179)
T ss_pred CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEECc
Confidence 379999999963 122 2223333457899999999998888888888888888888 88999996
No 170
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.58 E-value=1.3e-07 Score=70.61 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=53.9
Q ss_pred EEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHH----HcCCCeEEEEEe
Q psy9646 135 TINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAK----QIGVTNIVVFIN 209 (211)
Q Consensus 135 tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~----~~~~~~~i~~in 209 (211)
|+...+..+...+.++.+.||||+.+|.......+..+|++++|+|+...-. ......+..+. ..++| +++++|
T Consensus 37 t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~N 115 (167)
T cd04160 37 TVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILAN 115 (167)
T ss_pred ccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEE
Confidence 3344445566678899999999999998888888999999999999865421 11222222222 24678 889999
Q ss_pred CC
Q psy9646 210 KF 211 (211)
Q Consensus 210 K~ 211 (211)
|+
T Consensus 116 K~ 117 (167)
T cd04160 116 KQ 117 (167)
T ss_pred cc
Confidence 96
No 171
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.57 E-value=6.9e-07 Score=74.52 Aligned_cols=164 Identities=10% Similarity=0.073 Sum_probs=91.1
Q ss_pred EEEEEEEEecCCEEEEeecCcee--e-EEEEEEEecceecceecccCceehhccCCCcccccccccccccchhhhhhhhc
Q psy9646 41 GRLERGIVKKGMECEFTGYGRQF--K-TTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKV 117 (211)
Q Consensus 41 G~v~~G~i~~g~~v~i~p~~~~~--~-~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f 117 (211)
|++..--.+.|+++.++..+.-- . .--++........+...+|+...+.|. +. .-...|.+ ..+..+++++
T Consensus 101 ~~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~le-lk-~~adVglV----G~PNaGKSTL 174 (335)
T PRK12299 101 GELIADLTEHGQRFLVAKGGKGGLGNAHFKSSTNRAPRYATPGEPGEERWLRLE-LK-LLADVGLV----GLPNAGKSTL 174 (335)
T ss_pred CcEEEEcCCCCcEEEEecCCCCcCCchhhccccCCCCccccCCCCCcEEEEEEE-Ec-ccCCEEEE----cCCCCCHHHH
Confidence 45666666788888887665200 0 111111111233455677777776544 11 01112221 2344566666
Q ss_pred ccccccccchhhcccceEEeEeEEEeee-CCceeEeecCCcccc-------cHhHHhhhccccceEEEEEeccCCC-Ccc
Q psy9646 118 KQYADIDNAPEEKARGITINVAHVEYAT-ENRHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATDGA-MPQ 188 (211)
Q Consensus 118 ~~~i~~~~~~~e~~rg~tv~~~~~~~~~-~~~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~~~-~~~ 188 (211)
...+.............|+......+.. ...++.+.||||..+ +....+.-++.+|++++|+|+...- ..+
T Consensus 175 ln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~ 254 (335)
T PRK12299 175 ISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVED 254 (335)
T ss_pred HHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHH
Confidence 5544222212222234566666666766 456799999999642 4455667778899999999987543 222
Q ss_pred hHHHHHHHHH-----cCCCeEEEEEeCC
Q psy9646 189 TREHLLLAKQ-----IGVTNIVVFINKF 211 (211)
Q Consensus 189 ~~~~~~~~~~-----~~~~~~i~~inK~ 211 (211)
-+.+.+.+.. .+.| +++|+||+
T Consensus 255 ~~~~~~EL~~~~~~L~~kp-~IIV~NKi 281 (335)
T PRK12299 255 YKTIRNELEKYSPELADKP-RILVLNKI 281 (335)
T ss_pred HHHHHHHHHHhhhhcccCC-eEEEEECc
Confidence 2334444443 2456 77899996
No 172
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.57 E-value=3.5e-07 Score=79.01 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=68.9
Q ss_pred chhhhhhhhccccccccc-chhhcccceEEeEeEEEeeeCCceeEeecCCcccccHh--------HHhhhccccceEEEE
Q psy9646 108 VLADKKLAKVKQYADIDN-APEEKARGITINVAHVEYATENRHYSHTDCPGHADYIK--------NMITGTSQMDGAILV 178 (211)
Q Consensus 108 ~~~~~~~~~f~~~i~~~~-~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~--------~~~~~~~~~d~~~~v 178 (211)
+.+..|++++...+.... .......+.|.+.....+..++..+.++||||+.++.. .+...+..+|++++|
T Consensus 210 G~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V 289 (442)
T TIGR00450 210 GSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYV 289 (442)
T ss_pred CCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 334455555544443221 11233456777777777788888999999999865432 245677899999999
Q ss_pred EeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 179 VAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 179 vd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+..+....+. ++..+...+.| +|+|+||+
T Consensus 290 ~D~s~~~s~~~~-~l~~~~~~~~p-iIlV~NK~ 320 (442)
T TIGR00450 290 LDASQPLTKDDF-LIIDLNKSKKP-FILVLNKI 320 (442)
T ss_pred EECCCCCChhHH-HHHHHhhCCCC-EEEEEECc
Confidence 999877654444 55666556777 78999996
No 173
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.54 E-value=2.5e-07 Score=84.59 Aligned_cols=102 Identities=13% Similarity=0.158 Sum_probs=72.4
Q ss_pred hhhhhhhhcccccccccc-hhhcccceEEeEeEEEeeeCCceeEeecCCcccc---------cHhH--HhhhccccceEE
Q psy9646 109 LADKKLAKVKQYADIDNA-PEEKARGITINVAHVEYATENRHYSHTDCPGHAD---------YIKN--MITGTSQMDGAI 176 (211)
Q Consensus 109 ~~~~~~~~f~~~i~~~~~-~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~---------~~~~--~~~~~~~~d~~~ 176 (211)
.+..|++++...+..... ......+.|.+.....++..+.++.|+||||+.+ +... ...++..+|+++
T Consensus 458 ~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvi 537 (712)
T PRK09518 458 RPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELAL 537 (712)
T ss_pred CCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEE
Confidence 344566665544432221 1223456666665566777888999999999642 2222 345678999999
Q ss_pred EEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 177 LVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 177 ~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+|+.++...++..++..+...+.| +|+|+||+
T Consensus 538 lViDat~~~s~~~~~i~~~~~~~~~p-iIiV~NK~ 571 (712)
T PRK09518 538 FLFDASQPISEQDLKVMSMAVDAGRA-LVLVFNKW 571 (712)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEEch
Confidence 99999999999998888888888888 88999996
No 174
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.53 E-value=1.3e-07 Score=68.92 Aligned_cols=99 Identities=20% Similarity=0.198 Sum_probs=60.5
Q ss_pred hhhhhhcccccccccchhhcccceEEeEeEEEeeeCC--ceeEeecCCccccc-------HhHHhhhccccceEEEEEec
Q psy9646 111 DKKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN--RHYSHTDCPGHADY-------IKNMITGTSQMDGAILVVAA 181 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~--~~~~~iDtPG~~~~-------~~~~~~~~~~~d~~~~vvd~ 181 (211)
..|++.+...+.....+.+..+..+.+.....+...+ ..+.++||||+.++ .+++...+...|..++++++
T Consensus 11 ~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~ 90 (161)
T TIGR00231 11 NVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDV 90 (161)
T ss_pred CCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhh
Confidence 3455555554444444444445555555554455566 67889999999888 44455555556666666666
Q ss_pred cCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 182 TDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..........+...+.. +.| +++++||+
T Consensus 91 ~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~ 118 (161)
T TIGR00231 91 EEILEKQTKEIIHHAES-NVP-IILVGNKI 118 (161)
T ss_pred hhHhHHHHHHHHHhccc-CCc-EEEEEEcc
Confidence 55544444555555543 777 78999995
No 175
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.53 E-value=2.7e-07 Score=69.26 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=51.3
Q ss_pred cceEEeEeEEEeeeC-CceeEeecCCcccc-------cHhHHhhhccccceEEEEEeccCCC-----Cc--chHHHHHHH
Q psy9646 132 RGITINVAHVEYATE-NRHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATDGA-----MP--QTREHLLLA 196 (211)
Q Consensus 132 rg~tv~~~~~~~~~~-~~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~~~-----~~--~~~~~~~~~ 196 (211)
.+.|.......+... +.++.|+||||+.+ +.......+..+|++++|+|+.... .. ....+...+
T Consensus 27 ~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 106 (176)
T cd01881 27 PFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAEL 106 (176)
T ss_pred CceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHH
Confidence 344555555556666 78899999999742 3345567778899999999997763 21 112222222
Q ss_pred HH----------cCCCeEEEEEeCC
Q psy9646 197 KQ----------IGVTNIVVFINKF 211 (211)
Q Consensus 197 ~~----------~~~~~~i~~inK~ 211 (211)
.. .+.| +++++||+
T Consensus 107 ~~~~~~~~~~~~~~~p-~ivv~NK~ 130 (176)
T cd01881 107 KLYDLETILGLLTAKP-VIYVLNKI 130 (176)
T ss_pred HHhhhhhHHHHHhhCC-eEEEEEch
Confidence 21 3567 77899996
No 176
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.53 E-value=2.3e-06 Score=78.37 Aligned_cols=176 Identities=16% Similarity=0.106 Sum_probs=104.4
Q ss_pred hHHHHHhhhC--CCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEec-ceecc
Q psy9646 2 ELLNQIDTYI--PQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMF-HKILD 78 (211)
Q Consensus 2 ~ll~~l~~~i--~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~-~~~~~ 78 (211)
+|+++|.... ..+..+.+.|++..|..++..++.|++++|+|.+|++++||.+.+.|. ..+|++++.. .++++
T Consensus 442 eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~~----~gkVr~m~~~~~~~v~ 517 (787)
T PRK05306 442 ELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGTT----YGRVRAMVDDNGKRVK 517 (787)
T ss_pred HHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEECCc----EEEEEEEECCCCCCCC
Confidence 3555554311 123445678999999999999999999999999999999999998653 6889999875 46899
Q ss_pred eecccCceehhccCCCcccc-cccccccccchhhhhhhhccccccccc-chhhcccceEEeEeEEEeeeCC-ce---eEe
Q psy9646 79 EAQAGDQLGALVKGMKRDEV-NRGLIMAKPVLADKKLAKVKQYADIDN-APEEKARGITINVAHVEYATEN-RH---YSH 152 (211)
Q Consensus 79 ~a~~G~~v~~~l~~~~~~~v-~~G~ii~~~~~~~~~~~~f~~~i~~~~-~~~e~~rg~tv~~~~~~~~~~~-~~---~~~ 152 (211)
+|.||+.|.+. +..++ ..|++++.......++.-...+..... ......+..++.--+.....++ .. ++=
T Consensus 518 ~A~pGd~V~I~----gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iik 593 (787)
T PRK05306 518 EAGPSTPVEIL----GLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIK 593 (787)
T ss_pred EEcCCCeEEEe----CCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEE
Confidence 99999999873 22344 788888743322211110000000000 0000000011100000000010 01 222
Q ss_pred ecCCcccccHhHHhhhccccceEEEEEeccCCC
Q psy9646 153 TDCPGHADYIKNMITGTSQMDGAILVVAATDGA 185 (211)
Q Consensus 153 iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~ 185 (211)
-|+-|-.+-+...+..+..-+.-+=++.+.-|.
T Consensus 594 ad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~ 626 (787)
T PRK05306 594 ADVQGSVEALKDSLEKLSTDEVKVNIIHSGVGA 626 (787)
T ss_pred eCCcchHHHHHHHHHhhcccCCceEEEeeccCC
Confidence 577777777777777777667777777765553
No 177
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.52 E-value=8.3e-07 Score=73.90 Aligned_cols=164 Identities=12% Similarity=0.090 Sum_probs=85.9
Q ss_pred EEEEEEEEecCCEEEEeecCce--eeEE-EEEEEecceecceecccCceehhccCCCcccccccccccccchhhhhhhhc
Q psy9646 41 GRLERGIVKKGMECEFTGYGRQ--FKTT-VTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKV 117 (211)
Q Consensus 41 G~v~~G~i~~g~~v~i~p~~~~--~~~~-v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f 117 (211)
|++..--.+.|+++.++..+.- -... -++-.......+...+|+...+.|. +. .-...+.+ ..+..+++++
T Consensus 100 ~~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~le-lk-~~adV~lv----G~pnaGKSTL 173 (329)
T TIGR02729 100 GELLADLTEPGQRFVVAKGGRGGLGNAHFKSSTNRAPRFATPGEPGEERWLRLE-LK-LLADVGLV----GLPNAGKSTL 173 (329)
T ss_pred CcEEeEeccCCcEEEecCCCCCCCCcccccCccCCCCcccCCCCCCcEEEEEEE-ee-ccccEEEE----cCCCCCHHHH
Confidence 4555566677888888665520 0111 1111111233455667776665443 11 00111111 2334555555
Q ss_pred ccccccccchhhcccceEEeEeEEEeeeCC-ceeEeecCCcccc-------cHhHHhhhccccceEEEEEeccCC----C
Q psy9646 118 KQYADIDNAPEEKARGITINVAHVEYATEN-RHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATDG----A 185 (211)
Q Consensus 118 ~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~-~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~~----~ 185 (211)
...+.............|.......+...+ .++.++||||+.+ +....+..++.+|++++|+|+... .
T Consensus 174 l~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~ 253 (329)
T TIGR02729 174 ISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDP 253 (329)
T ss_pred HHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCH
Confidence 544422111111112344444555556555 7899999999742 345566777889999999998754 1
Q ss_pred CcchHHHHHHHHH-----cCCCeEEEEEeCC
Q psy9646 186 MPQTREHLLLAKQ-----IGVTNIVVFINKF 211 (211)
Q Consensus 186 ~~~~~~~~~~~~~-----~~~~~~i~~inK~ 211 (211)
..+-..+.+.+.. .+.| +++|+||+
T Consensus 254 ~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK~ 283 (329)
T TIGR02729 254 IEDYEIIRNELKKYSPELAEKP-RIVVLNKI 283 (329)
T ss_pred HHHHHHHHHHHHHhhhhhccCC-EEEEEeCc
Confidence 1222223333332 2456 77899996
No 178
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.52 E-value=7.8e-07 Score=59.33 Aligned_cols=69 Identities=20% Similarity=0.380 Sum_probs=53.5
Q ss_pred ecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc----eecceecccCceehhccCCCcccccccccccc
Q psy9646 32 IPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH----KILDEAQAGDQLGALVKGMKRDEVNRGLIMAK 106 (211)
Q Consensus 32 ~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~ 106 (211)
.++.|++..+||.+|.++.||.|.....++ +.++..|...+ .++++|.|||++.+ ....++..|+++++
T Consensus 12 ~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~--~~kv~~l~~~~g~~~~~v~~a~aGdIv~v----~gl~~~~~Gdtl~~ 84 (85)
T cd03689 12 PAHRDRIAFVRVCSGKFERGMKVKHVRLGK--EVRLSNPQQFFAQDRETVDEAYPGDIIGL----VNPGNFQIGDTLTE 84 (85)
T ss_pred CCCCcEEEEEEEECCEEcCCCEEEEcCCCC--EEEeeEeEEEecCCeeEcCEECCCCEEEE----ECCCCccccCEeeC
Confidence 567899999999999999999998765543 45566665443 58899999999987 23456788988863
No 179
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.52 E-value=4.3e-07 Score=67.80 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=48.9
Q ss_pred ceEEeEeEEEeeeCCceeEeecCCccccc-------H-hHHhhhc-cccceEEEEEeccCCCC---cchHHHHHHHHHc-
Q psy9646 133 GITINVAHVEYATENRHYSHTDCPGHADY-------I-KNMITGT-SQMDGAILVVAATDGAM---PQTREHLLLAKQI- 199 (211)
Q Consensus 133 g~tv~~~~~~~~~~~~~~~~iDtPG~~~~-------~-~~~~~~~-~~~d~~~~vvd~~~~~~---~~~~~~~~~~~~~- 199 (211)
+.|.......+..++.++.++||||+.+. . .....++ ..+|++++|+|+..... .....++..++..
T Consensus 32 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~ 111 (168)
T cd01897 32 FTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF 111 (168)
T ss_pred CcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc
Confidence 34555555556666789999999998421 1 1222222 23689999999976432 2223445555544
Q ss_pred -CCCeEEEEEeCC
Q psy9646 200 -GVTNIVVFINKF 211 (211)
Q Consensus 200 -~~~~~i~~inK~ 211 (211)
+.| +|+++||+
T Consensus 112 ~~~p-vilv~NK~ 123 (168)
T cd01897 112 KNKP-VIVVLNKI 123 (168)
T ss_pred CcCC-eEEEEEcc
Confidence 677 88999996
No 180
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.52 E-value=1.1e-06 Score=75.43 Aligned_cols=165 Identities=15% Similarity=0.135 Sum_probs=88.6
Q ss_pred EEEEEEEEEecCCEEEEeecCcee---eEEEEEEEecceecceecccCceehhccCCCcccccccccccccchhhhhhhh
Q psy9646 40 TGRLERGIVKKGMECEFTGYGRQF---KTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAK 116 (211)
Q Consensus 40 ~G~v~~G~i~~g~~v~i~p~~~~~---~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~ 116 (211)
+|++..--.+.|+++.++..|.-- ..-.++......-.+...+|+.-.+.|. +. .-...|. -..+..++++
T Consensus 100 ~~~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s~~~~p~~~~~G~~ge~~~~~le-lk-~~adVgl----VG~pNaGKST 173 (424)
T PRK12297 100 TGEVIADLVEPGQEVVVAKGGRGGRGNAHFATSTNQAPRIAENGEPGEERELRLE-LK-LLADVGL----VGFPNVGKST 173 (424)
T ss_pred CCcEEeeeccCCcEEEEECCCCCCcCchhhcCCCCCCCCcCCCCCCCeEeEEEEe-ec-ccCcEEE----EcCCCCCHHH
Confidence 355666666778888886665200 1112222222223344556666665443 11 0011111 1234456666
Q ss_pred cccccccccchhhcccceEEeEeEEEeeeC-CceeEeecCCcccc-------cHhHHhhhccccceEEEEEeccCC----
Q psy9646 117 VKQYADIDNAPEEKARGITINVAHVEYATE-NRHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATDG---- 184 (211)
Q Consensus 117 f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~-~~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~~---- 184 (211)
+...+.-...+.......|....+..+... +.++.+.||||..+ +....+..++.+|++++|+|+...
T Consensus 174 LLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~d 253 (424)
T PRK12297 174 LLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRD 253 (424)
T ss_pred HHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCC
Confidence 655443222122222345555555656655 67899999999642 345556667889999999998643
Q ss_pred CCcchHHHHHHHHH-----cCCCeEEEEEeCC
Q psy9646 185 AMPQTREHLLLAKQ-----IGVTNIVVFINKF 211 (211)
Q Consensus 185 ~~~~~~~~~~~~~~-----~~~~~~i~~inK~ 211 (211)
.......+.+.+.. .+.| +++|+||+
T Consensus 254 p~e~~~~i~~EL~~y~~~L~~kP-~IVV~NK~ 284 (424)
T PRK12297 254 PIEDYEKINKELKLYNPRLLERP-QIVVANKM 284 (424)
T ss_pred hHHHHHHHHHHHhhhchhccCCc-EEEEEeCC
Confidence 22222334444443 3566 77899996
No 181
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.51 E-value=2.7e-07 Score=68.97 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=49.0
Q ss_pred EEeEeEEEeeeCCc-eeEeecCCccc-------ccHhHHhhhccccceEEEEEeccCCC-C-cchHHHHHHHHHc-----
Q psy9646 135 TINVAHVEYATENR-HYSHTDCPGHA-------DYIKNMITGTSQMDGAILVVAATDGA-M-PQTREHLLLAKQI----- 199 (211)
Q Consensus 135 tv~~~~~~~~~~~~-~~~~iDtPG~~-------~~~~~~~~~~~~~d~~~~vvd~~~~~-~-~~~~~~~~~~~~~----- 199 (211)
+.......+...+. ++.|+||||+. .+....+..+..+|++++|+|+.... . ..-..+.+.+...
T Consensus 34 t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (170)
T cd01898 34 TLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELL 113 (170)
T ss_pred ccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCcccc
Confidence 34434444555565 89999999964 24455666677899999999998762 1 2223343444332
Q ss_pred CCCeEEEEEeCC
Q psy9646 200 GVTNIVVFINKF 211 (211)
Q Consensus 200 ~~~~~i~~inK~ 211 (211)
+.| +++++||+
T Consensus 114 ~~p-~ivv~NK~ 124 (170)
T cd01898 114 EKP-RIVVLNKI 124 (170)
T ss_pred ccc-cEEEEEch
Confidence 456 77899995
No 182
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.50 E-value=5.9e-07 Score=80.31 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=59.0
Q ss_pred hhcccceEEeEeEEEeeeCCceeEeecCCcccccHhH-----H---hhhccccceEEEEEeccCCCCcchHHHHHHHHHc
Q psy9646 128 EEKARGITINVAHVEYATENRHYSHTDCPGHADYIKN-----M---ITGTSQMDGAILVVAATDGAMPQTREHLLLAKQI 199 (211)
Q Consensus 128 ~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~-----~---~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~ 199 (211)
....+|.|++.....++.++.++.++||||+.++... + ......+|++++|+|+... ........++.+.
T Consensus 21 v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~ 98 (591)
T TIGR00437 21 VGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLEL 98 (591)
T ss_pred ecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhc
Confidence 3445678888888888888889999999999876421 1 1233578999999999763 2233444556677
Q ss_pred CCCeEEEEEeCC
Q psy9646 200 GVTNIVVFINKF 211 (211)
Q Consensus 200 ~~~~~i~~inK~ 211 (211)
++| +++++||+
T Consensus 99 ~~P-iIIVlNK~ 109 (591)
T TIGR00437 99 GIP-MILALNLV 109 (591)
T ss_pred CCC-EEEEEehh
Confidence 888 78999996
No 183
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.50 E-value=3.2e-07 Score=79.50 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=65.4
Q ss_pred hhhhhhhhcccccccccc-hhhcccceEEeEeEEEeeeCCceeEeecCCcccccH--------hHHhhhccccceEEEEE
Q psy9646 109 LADKKLAKVKQYADIDNA-PEEKARGITINVAHVEYATENRHYSHTDCPGHADYI--------KNMITGTSQMDGAILVV 179 (211)
Q Consensus 109 ~~~~~~~~f~~~i~~~~~-~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~--------~~~~~~~~~~d~~~~vv 179 (211)
.+..|++++...+.-... ......+.|.+.....+...+..+.++||||++++. ..++..+..+|++++|+
T Consensus 223 ~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~Vv 302 (449)
T PRK05291 223 RPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVL 302 (449)
T ss_pred CCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 334455554443322211 123345667666666677788899999999987642 23455678899999999
Q ss_pred eccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 180 AATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 180 d~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+..+...+....+.. ..+.| +++|+||+
T Consensus 303 D~s~~~s~~~~~~l~~--~~~~p-iiiV~NK~ 331 (449)
T PRK05291 303 DASEPLTEEDDEILEE--LKDKP-VIVVLNKA 331 (449)
T ss_pred cCCCCCChhHHHHHHh--cCCCC-cEEEEEhh
Confidence 9988766555544443 34667 78999996
No 184
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.50 E-value=5.4e-07 Score=66.69 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=62.2
Q ss_pred hhhhhhcccccccccchhhcccceEEeEeEEEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-
Q psy9646 111 DKKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP- 187 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~- 187 (211)
..|++++...+.......+.....+.+.....+..++ .++.+.||||+..+.......+..+|++++|+|......-
T Consensus 10 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~ 89 (161)
T cd01861 10 SVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFD 89 (161)
T ss_pred CCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHH
Confidence 3455555444433333333344444444444444443 4689999999999888777888999999999998765432
Q ss_pred chHHHHHHH-HHcC--CCeEEEEEeCC
Q psy9646 188 QTREHLLLA-KQIG--VTNIVVFINKF 211 (211)
Q Consensus 188 ~~~~~~~~~-~~~~--~~~~i~~inK~ 211 (211)
....++... ...+ .| +++++||+
T Consensus 90 ~~~~~~~~~~~~~~~~~~-iilv~nK~ 115 (161)
T cd01861 90 NTDKWIDDVRDERGNDVI-IVLVGNKT 115 (161)
T ss_pred HHHHHHHHHHHhCCCCCE-EEEEEECh
Confidence 223333333 2333 66 88999996
No 185
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.49 E-value=8.9e-07 Score=64.51 Aligned_cols=78 Identities=19% Similarity=0.166 Sum_probs=55.9
Q ss_pred ceEEeEeEEEeeeC-CceeEeecCCcccccH-------hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeE
Q psy9646 133 GITINVAHVEYATE-NRHYSHTDCPGHADYI-------KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNI 204 (211)
Q Consensus 133 g~tv~~~~~~~~~~-~~~~~~iDtPG~~~~~-------~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~ 204 (211)
+.+.......+... ...+.++||||+.++. ..+...+..+|++++++|+..........+.......+.| +
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~-~ 107 (163)
T cd00880 29 GTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKP-V 107 (163)
T ss_pred CcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCe-E
Confidence 33433333333333 6789999999987653 3455677899999999999988776666556666677888 7
Q ss_pred EEEEeCC
Q psy9646 205 VVFINKF 211 (211)
Q Consensus 205 i~~inK~ 211 (211)
++++||+
T Consensus 108 ivv~nK~ 114 (163)
T cd00880 108 LLVLNKI 114 (163)
T ss_pred EEEEEcc
Confidence 8999995
No 186
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.48 E-value=8e-07 Score=66.18 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=48.4
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
...+.+.||||++.|.......+..+|++++|+|+.+...-+. +.++..++.. +.| ++++.||+
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-~ivv~nK~ 114 (161)
T cd04124 48 TILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIP-CIVVANKI 114 (161)
T ss_pred EEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEECc
Confidence 3467899999999998877788899999999999876644222 3344555443 567 78999995
No 187
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.47 E-value=8.2e-07 Score=65.80 Aligned_cols=100 Identities=14% Similarity=0.075 Sum_probs=61.2
Q ss_pred hhhhhhcccccccccchhhcccceEEeEeEEEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc
Q psy9646 111 DKKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ 188 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~ 188 (211)
..|++++...+..........+..+.+.....+...+ .++.+.||||+..|.......+..+|++++|+|+.+...-+
T Consensus 10 ~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~ 89 (164)
T smart00175 10 GVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFE 89 (164)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHH
Confidence 3455555444432322233333333333334444444 57889999999999888888889999999999997654332
Q ss_pred h-HHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 189 T-REHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 189 ~-~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
. ..++..+.. .++| +++++||+
T Consensus 90 ~~~~~l~~~~~~~~~~~p-ivvv~nK~ 115 (164)
T smart00175 90 NLKNWLKELREYADPNVV-IMLVGNKS 115 (164)
T ss_pred HHHHHHHHHHHhCCCCCe-EEEEEEch
Confidence 2 123333322 3466 88999995
No 188
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.46 E-value=1.6e-06 Score=57.22 Aligned_cols=64 Identities=28% Similarity=0.347 Sum_probs=50.2
Q ss_pred CcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc----eecceecccCceehhccCCCccccccccccc
Q psy9646 35 RGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH----KILDEAQAGDQLGALVKGMKRDEVNRGLIMA 105 (211)
Q Consensus 35 ~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~ 105 (211)
.|.+..+||.+|.+++||+|.....++ +.+|.+|.... .+++++.|||++++ .++ + ++.|++++
T Consensus 13 ~G~i~~~Rv~sG~lk~gd~v~~~~~~~--~~~v~~i~~~~g~~~~~~~~~~aGdI~~i--~g~--~-~~~Gdtl~ 80 (81)
T cd04091 13 FGQLTYMRIYQGKLKKGDTIYNVRTGK--KVRVPRLVRMHSNEMEEVEEAGAGDICAI--FGI--D-CASGDTFT 80 (81)
T ss_pred CCCEEEEEEecCEEcCCCEEEEcCCCC--EEEEeEEEEEeCCCceEccEECCCCEEEE--ECC--C-cccCCEec
Confidence 499999999999999999998877654 56677775443 58899999999884 433 3 77888775
No 189
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.44 E-value=8.1e-07 Score=81.47 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=67.1
Q ss_pred hhhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHh--------HH----hhhccccceEEE
Q psy9646 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIK--------NM----ITGTSQMDGAIL 177 (211)
Q Consensus 110 ~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~--------~~----~~~~~~~d~~~~ 177 (211)
+..||+++...+.-.+.....-.|.|++.....+.+++.++.++||||+.++.. +. .-....+|++++
T Consensus 12 pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~ 91 (772)
T PRK09554 12 PNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLIN 91 (772)
T ss_pred CCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEE
Confidence 344555544333222222333467888888888888999999999999987642 11 111247899999
Q ss_pred EEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 178 VVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 178 vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+|+.... ....+..++.+.++| +++++||+
T Consensus 92 VvDat~le--r~l~l~~ql~e~giP-vIvVlNK~ 122 (772)
T PRK09554 92 VVDASNLE--RNLYLTLQLLELGIP-CIVALNML 122 (772)
T ss_pred EecCCcch--hhHHHHHHHHHcCCC-EEEEEEch
Confidence 99997643 234456677888999 77999996
No 190
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.42 E-value=1.3e-06 Score=63.93 Aligned_cols=99 Identities=15% Similarity=0.075 Sum_probs=60.7
Q ss_pred hhhhhcccccccccchhhcccceEEeEeEEEeee--CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cc
Q psy9646 112 KKLAKVKQYADIDNAPEEKARGITINVAHVEYAT--ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQ 188 (211)
Q Consensus 112 ~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~--~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~ 188 (211)
.|++++...+.......+..+....+.....+.. ....+.+.|+||+..+.......++.+|++++++|+.+... ..
T Consensus 11 ~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~ 90 (159)
T cd00154 11 VGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFEN 90 (159)
T ss_pred CCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHH
Confidence 4455554444323222222233333333333333 33568899999999998888889999999999999976432 22
Q ss_pred hHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 189 TREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 189 ~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
...++..+... +.| +++++||+
T Consensus 91 ~~~~~~~~~~~~~~~~p-~ivv~nK~ 115 (159)
T cd00154 91 LDKWLKELKEYAPENIP-IILVGNKI 115 (159)
T ss_pred HHHHHHHHHHhCCCCCc-EEEEEEcc
Confidence 23344444443 366 78899995
No 191
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.39 E-value=1e-06 Score=74.94 Aligned_cols=109 Identities=16% Similarity=0.074 Sum_probs=79.3
Q ss_pred cccccccchhhhhhhhccccccc-ccchhhcccceEEeEeEEEeeeCCceeEeecCCcccc---c-----HhHHhhhccc
Q psy9646 101 GLIMAKPVLADKKLAKVKQYADI-DNAPEEKARGITINVAHVEYATENRHYSHTDCPGHAD---Y-----IKNMITGTSQ 171 (211)
Q Consensus 101 G~ii~~~~~~~~~~~~f~~~i~~-~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~---~-----~~~~~~~~~~ 171 (211)
|.-++-.+.|..|++++...+.- +..=..--.|+|.+.--..+..++..+.++||.|.++ . ++.++..+..
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ 296 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEE 296 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHh
Confidence 33333344555666665544421 1111222457888888889999999999999999774 2 4668899999
Q ss_pred cceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 172 MDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 172 ~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
||.+++|+|+.+.+..++..++. +...+.| +++++||+
T Consensus 297 ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~-~i~v~NK~ 334 (454)
T COG0486 297 ADLVLFVLDASQPLDKEDLALIE-LLPKKKP-IIVVLNKA 334 (454)
T ss_pred CCEEEEEEeCCCCCchhhHHHHH-hcccCCC-EEEEEech
Confidence 99999999999998888888877 4455667 78999995
No 192
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.39 E-value=2.9e-06 Score=74.86 Aligned_cols=101 Identities=21% Similarity=0.301 Sum_probs=75.9
Q ss_pred hHHHHHhhhCCCCCC-C--------CCCCeeEEEeeEE---eecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEE
Q psy9646 2 ELLNQIDTYIPQPVR-D--------LDKPFYLPVEHTY---SIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTG 69 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~-~--------~~~p~~~~v~~~~---~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~ 69 (211)
.||++|.+++|.|.. . .+.+|...|..+. ..+++|++...||.||+++.|++|.....++ +.++..
T Consensus 264 ~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k--~~ri~~ 341 (526)
T PRK00741 264 EFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGK--DVRISN 341 (526)
T ss_pred HHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCc--eEEecc
Confidence 589999999987742 1 1345666666665 3458999999999999999999998766654 555656
Q ss_pred EEecc----eecceecccCceehhccCCCcccccccccccccc
Q psy9646 70 IEMFH----KILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPV 108 (211)
Q Consensus 70 i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~ 108 (211)
+.... .++++|.|||++++ .+..+.+.|++++...
T Consensus 342 ~~~~~g~~~~~v~~a~aGDIv~v----~~l~~~~~GDTL~~~~ 380 (526)
T PRK00741 342 ALTFMAQDREHVEEAYAGDIIGL----HNHGTIQIGDTFTQGE 380 (526)
T ss_pred eEEEecCCceECceeCCCCEEEE----ECCCCCccCCCccCCC
Confidence 54332 68999999999987 3456788999998643
No 193
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.39 E-value=9.5e-07 Score=65.43 Aligned_cols=69 Identities=23% Similarity=0.214 Sum_probs=48.7
Q ss_pred EeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cc-hHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 142 EYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQ-TREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~-~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
.++..+.++.++||||+.+|.......+..+|++++|+|+..... .. .+.+...++. .+.| +++++||+
T Consensus 37 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~ 110 (158)
T cd04151 37 TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAV-LLVFANKQ 110 (158)
T ss_pred EEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCc-EEEEEeCC
Confidence 344567789999999999887766777899999999999876421 11 2223333332 3566 88999996
No 194
>PRK00007 elongation factor G; Reviewed
Probab=98.38 E-value=2.5e-06 Score=77.78 Aligned_cols=100 Identities=24% Similarity=0.342 Sum_probs=77.1
Q ss_pred hHHHHHhhhCCCCCC--------------------CCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCc
Q psy9646 2 ELLNQIDTYIPQPVR--------------------DLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGR 61 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~--------------------~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~ 61 (211)
.||++|..++|.|.. +.++||.+.|..+...++.|.+..+||.+|+++.||+|...-.+
T Consensus 270 ~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~- 348 (693)
T PRK00007 270 PLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKG- 348 (693)
T ss_pred HHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCC-
Confidence 589999999987741 23568999999999999999999999999999999999754333
Q ss_pred eeeEEEEEEEecc----eecceecccCceehhccCCCccccccccccccc
Q psy9646 62 QFKTTVTGIEMFH----KILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107 (211)
Q Consensus 62 ~~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~ 107 (211)
.+.+|.+|.... .+++++.|||++++ .+ ..++..|++++..
T Consensus 349 -~~eki~~l~~~~g~~~~~v~~~~aGdI~~i--~g--l~~~~~GdtL~~~ 393 (693)
T PRK00007 349 -KKERIGRILQMHANKREEIKEVRAGDIAAA--VG--LKDTTTGDTLCDE 393 (693)
T ss_pred -ceeEeceeEEeccCCcccccccCCCcEEEE--eC--CccCCcCCEeeCC
Confidence 245666665543 68999999999987 22 2356788888653
No 195
>KOG0463|consensus
Probab=98.38 E-value=4.4e-07 Score=75.18 Aligned_cols=63 Identities=30% Similarity=0.499 Sum_probs=58.0
Q ss_pred ceeEeecCCcccccHhHHhhhcc--ccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTS--QMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~--~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.-++|||-.||++|++.+..|+. ..|..++++.++.|+-+.+++|+.++..+.+| +++|++||
T Consensus 219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VP-VfvVVTKI 283 (641)
T KOG0463|consen 219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVP-VFVVVTKI 283 (641)
T ss_pred eeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCc-EEEEEEee
Confidence 45899999999999999999886 47999999999999999999999999999999 66899996
No 196
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.38 E-value=1.9e-06 Score=65.76 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=67.4
Q ss_pred hhhhhccccccccc--chhhcccceEEeEeEEEeeeCCceeEeecCCcccc-------------cHhHHhhhccccceEE
Q psy9646 112 KKLAKVKQYADIDN--APEEKARGITINVAHVEYATENRHYSHTDCPGHAD-------------YIKNMITGTSQMDGAI 176 (211)
Q Consensus 112 ~~~~~f~~~i~~~~--~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~-------------~~~~~~~~~~~~d~~~ 176 (211)
.|++++...+.... .......|.|..+.+..+.. ++.|+|-||... ++.+-+..=+.-.+++
T Consensus 35 VGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vv 111 (200)
T COG0218 35 VGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVV 111 (200)
T ss_pred ccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEE
Confidence 34455544443222 34556667777776654432 488999999542 2333333334467899
Q ss_pred EEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 177 LVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 177 ~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+++|++.++...+++.++++...++| +++++||+
T Consensus 112 lliD~r~~~~~~D~em~~~l~~~~i~-~~vv~tK~ 145 (200)
T COG0218 112 LLIDARHPPKDLDREMIEFLLELGIP-VIVVLTKA 145 (200)
T ss_pred EEEECCCCCcHHHHHHHHHHHHcCCC-eEEEEEcc
Confidence 99999999999999999999999999 77899996
No 197
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.38 E-value=2.7e-06 Score=62.70 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=52.0
Q ss_pred eeeCCceeEeecCCcccc--------cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 143 YATENRHYSHTDCPGHAD--------YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 143 ~~~~~~~~~~iDtPG~~~--------~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+...+..+.++||||+.. +.......+..+|++++++|+..........+.+.+...+.| +++++||+
T Consensus 46 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~ 121 (168)
T cd04163 46 YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKI 121 (168)
T ss_pred EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEch
Confidence 334456789999999754 233455668899999999999888666666777777777788 77899995
No 198
>KOG1423|consensus
Probab=98.37 E-value=1.1e-06 Score=70.88 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=69.7
Q ss_pred chhhhhhhhcccccccc-cchhhcccceEEeEeEEEeeeCCceeEeecCCc---------ccc---cHhHHhhhccccce
Q psy9646 108 VLADKKLAKVKQYADID-NAPEEKARGITINVAHVEYATENRHYSHTDCPG---------HAD---YIKNMITGTSQMDG 174 (211)
Q Consensus 108 ~~~~~~~~~f~~~i~~~-~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG---------~~~---~~~~~~~~~~~~d~ 174 (211)
+.|..|++.+..+..-. -.+...+-..|..-..+-++.++.|++|.|||| |+. +.++.+.|+..||+
T Consensus 79 G~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~ 158 (379)
T KOG1423|consen 79 GAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADC 158 (379)
T ss_pred cCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCE
Confidence 44555666665544322 234444556666767778889999999999999 222 45689999999999
Q ss_pred EEEEEeccCCCCcchHHHHHHHHHc-CCCeEEEEEeCC
Q psy9646 175 AILVVAATDGAMPQTREHLLLAKQI-GVTNIVVFINKF 211 (211)
Q Consensus 175 ~~~vvd~~~~~~~~~~~~~~~~~~~-~~~~~i~~inK~ 211 (211)
+++|+|+..--......++.-++.. .+| -|++.||+
T Consensus 159 vvVv~Das~tr~~l~p~vl~~l~~ys~ip-s~lvmnki 195 (379)
T KOG1423|consen 159 VVVVVDASATRTPLHPRVLHMLEEYSKIP-SILVMNKI 195 (379)
T ss_pred EEEEEeccCCcCccChHHHHHHHHHhcCC-ceeeccch
Confidence 9999999853223333444445443 577 56899996
No 199
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.37 E-value=7.1e-07 Score=65.97 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=49.5
Q ss_pred EEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-CcchHHHHHHH----HHcCCCeEEEEEeCC
Q psy9646 140 HVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLA----KQIGVTNIVVFINKF 211 (211)
Q Consensus 140 ~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-~~~~~~~~~~~----~~~~~~~~i~~inK~ 211 (211)
...+...+..+.+.||||+..+.......+..+|++++|+|+...- .......+... ...+.| ++++.||+
T Consensus 35 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~ 110 (158)
T cd00878 35 VETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVP-LLIFANKQ 110 (158)
T ss_pred eEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEeecc
Confidence 3445556778999999999988766667778999999999997652 12222222222 224667 88899996
No 200
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.37 E-value=1.3e-06 Score=65.33 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=47.7
Q ss_pred eCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 145 TENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 145 ~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
....++.++||||+..+.......+..+|++++|+|+.....-+. ..+...++. .+.| ++++.||+
T Consensus 44 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~ 113 (166)
T cd01893 44 PERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKS 113 (166)
T ss_pred CCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEch
Confidence 345678899999998887777777899999999999876544333 123343433 3566 88999996
No 201
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.36 E-value=1.4e-06 Score=67.38 Aligned_cols=102 Identities=13% Similarity=0.126 Sum_probs=57.1
Q ss_pred hhhhhhhhcccccccccchhhcccceEEeEeEEEeeeCCc-eeEeecCCccccc--------HhHHhhhccccceEEEEE
Q psy9646 109 LADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENR-HYSHTDCPGHADY--------IKNMITGTSQMDGAILVV 179 (211)
Q Consensus 109 ~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~-~~~~iDtPG~~~~--------~~~~~~~~~~~d~~~~vv 179 (211)
.+..|++++...+.............++......+...+. .+.|+||||+.+. ...+...+..+|++++|+
T Consensus 49 ~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~ 128 (204)
T cd01878 49 YTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVV 128 (204)
T ss_pred CCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3445666655444322211111122334444444444454 8999999997321 122334466899999999
Q ss_pred eccCCCCcch-HHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 180 AATDGAMPQT-REHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 180 d~~~~~~~~~-~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
|+........ ..+...+... +.| +++|+||+
T Consensus 129 D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~ 163 (204)
T cd01878 129 DASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKI 163 (204)
T ss_pred ECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEcc
Confidence 9987654433 2333444333 456 78999996
No 202
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.36 E-value=1.3e-06 Score=64.75 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=46.6
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHH---HcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAK---QIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~---~~~~~~~i~~inK~ 211 (211)
..+.+.||||+.+|.......+..+|++++|+|+.+...-+. ..++...+ ..++| ++++.||+
T Consensus 49 ~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~ 115 (161)
T cd04113 49 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKS 115 (161)
T ss_pred EEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEch
Confidence 467899999999988877788899999999999977544322 23333332 23666 88999995
No 203
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.36 E-value=3.3e-06 Score=77.04 Aligned_cols=100 Identities=25% Similarity=0.373 Sum_probs=76.6
Q ss_pred hHHHHHhhhCCCCCC-------------------CCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCce
Q psy9646 2 ELLNQIDTYIPQPVR-------------------DLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQ 62 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~-------------------~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~ 62 (211)
.||++|..++|.|.. +.++||.+.|..+...++.|.+..+||-+|.++.||+|...-.++
T Consensus 269 ~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~- 347 (689)
T TIGR00484 269 LLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNK- 347 (689)
T ss_pred HHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCCc-
Confidence 589999998887641 225789999999999999999999999999999999998643332
Q ss_pred eeEEEEEEEecc----eecceecccCceehhccCCCccccccccccccc
Q psy9646 63 FKTTVTGIEMFH----KILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107 (211)
Q Consensus 63 ~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~ 107 (211)
+.++..+.... .+++++.|||++++ .+ ..+...|++++..
T Consensus 348 -~~~i~~l~~~~g~~~~~v~~~~aGdI~~i--~g--l~~~~~gdtl~~~ 391 (689)
T TIGR00484 348 -KERVGRLVKMHANNREEIKEVRAGDICAA--IG--LKDTTTGDTLCDP 391 (689)
T ss_pred -eEEecceEEeecCCcccccccCCCCEEEE--cC--CCCCCCCCEEeCC
Confidence 34555664443 58899999999987 22 2356778888643
No 204
>PRK12739 elongation factor G; Reviewed
Probab=98.36 E-value=2.9e-06 Score=77.37 Aligned_cols=100 Identities=24% Similarity=0.361 Sum_probs=76.8
Q ss_pred hHHHHHhhhCCCCCC-------------------CCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCce
Q psy9646 2 ELLNQIDTYIPQPVR-------------------DLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQ 62 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~-------------------~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~ 62 (211)
.||++|..++|.|.. +.++||.+.|..++..++.|++..+||-+|.++.||.|.....++
T Consensus 268 ~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~- 346 (691)
T PRK12739 268 PLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGK- 346 (691)
T ss_pred HHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCc-
Confidence 589999998887631 246789999999999999999999999999999999987544432
Q ss_pred eeEEEEEEEecc----eecceecccCceehhccCCCccccccccccccc
Q psy9646 63 FKTTVTGIEMFH----KILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107 (211)
Q Consensus 63 ~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~ 107 (211)
+.+|.+|.... .+++++.|||++++. + ..++..|++++..
T Consensus 347 -~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~~~gdtl~~~ 390 (691)
T PRK12739 347 -KERIGRLLQMHANKREEIKEVYAGDIAAAV--G--LKDTTTGDTLCDE 390 (691)
T ss_pred -eEEecceEEEecCCcccccccCCCCEEEEe--C--CCcccCCCEEeCC
Confidence 45566664432 689999999999873 2 2346788888643
No 205
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.36 E-value=1.4e-06 Score=64.55 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=48.3
Q ss_pred EeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 142 EYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
.+......+.++||||+..+.......+..+|++++++|+..... ...+.++..+... ++| +++++||+
T Consensus 44 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~ 116 (163)
T cd01860 44 NLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNII-IALVGNKA 116 (163)
T ss_pred EECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECc
Confidence 333334567789999999887777777889999999999875432 3334444555444 355 77899995
No 206
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.34 E-value=2e-06 Score=63.58 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=48.8
Q ss_pred eeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHH------HcCCCeEEEEEeCC
Q psy9646 143 YATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAK------QIGVTNIVVFINKF 211 (211)
Q Consensus 143 ~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~------~~~~~~~i~~inK~ 211 (211)
+...+..+.+.||||+.+|.......+..+|++++|+|+.+... ......++.+. ..++| +++++||+
T Consensus 40 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~ 114 (162)
T cd04157 40 FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVP-ILFFANKM 114 (162)
T ss_pred EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCC-EEEEEeCc
Confidence 44567789999999999988777777899999999999976542 11122222221 23677 88999995
No 207
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.34 E-value=3.9e-06 Score=73.11 Aligned_cols=138 Identities=11% Similarity=0.082 Sum_probs=78.3
Q ss_pred EEEEEEEEEecCCEEEEeecCcee--eEEEE-EEEecceecceecccCceehhccCCCcccccccccccccchhhhhhhh
Q psy9646 40 TGRLERGIVKKGMECEFTGYGRQF--KTTVT-GIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAK 116 (211)
Q Consensus 40 ~G~v~~G~i~~g~~v~i~p~~~~~--~~~v~-~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~ 116 (211)
.|.+..--.+.|+++.++..|.-- ...-+ +-.....-.+...+|+.-.+.|. ++ .....+. -..+..++++
T Consensus 101 ~~~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~le-Lk-~~adV~L----VG~PNAGKST 174 (500)
T PRK12296 101 DGEVLADLVGAGTRFVAAAGGRGGLGNAALASKARKAPGFALLGEPGEERDLVLE-LK-SVADVGL----VGFPSAGKSS 174 (500)
T ss_pred CCcEEeeeccCCCEEEEEccCCCcCCCcccCCccCCCCccccCCCCCceEEEEEE-ec-ccceEEE----EEcCCCCHHH
Confidence 356666667888888887765300 11111 11111123345667777666554 11 0111111 1334556666
Q ss_pred cccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccc-------cHhHHhhhccccceEEEEEeccC
Q psy9646 117 VKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATD 183 (211)
Q Consensus 117 f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~ 183 (211)
+...+.-...+.......|+......+...+.++.+.||||..+ +....+..+..+|++++|+|+..
T Consensus 175 Lln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~ 248 (500)
T PRK12296 175 LISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCAT 248 (500)
T ss_pred HHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcc
Confidence 65544322222223345666666777777888999999999632 23445666788999999999964
No 208
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.34 E-value=3.8e-06 Score=74.16 Aligned_cols=100 Identities=21% Similarity=0.300 Sum_probs=76.6
Q ss_pred hHHHHHhhhCCCCCC-C--------CCCCeeEEEeeEEe--e-cCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEE
Q psy9646 2 ELLNQIDTYIPQPVR-D--------LDKPFYLPVEHTYS--I-PGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTG 69 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~-~--------~~~p~~~~v~~~~~--~-~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~ 69 (211)
.||+.|..++|.|.. . .+.+|.-.|..+.. . +++|++...||.||+++.|++|.....++ +.++..
T Consensus 265 ~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k--~~ri~~ 342 (527)
T TIGR00503 265 HFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGK--DVVISD 342 (527)
T ss_pred HHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCC--cEEecc
Confidence 589999999987742 1 23567777666665 3 58999999999999999999998766654 566666
Q ss_pred EEecc----eecceecccCceehhccCCCccccccccccccc
Q psy9646 70 IEMFH----KILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107 (211)
Q Consensus 70 i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~ 107 (211)
+.... .++++|.|||++++ .+..+.+.|++++..
T Consensus 343 ~~~~~g~~~~~v~~a~aGDI~~~----~~~~~~~~GDtl~~~ 380 (527)
T TIGR00503 343 ALTFMAGDREHVEEAYAGDIIGL----HNHGTIQIGDTFTQG 380 (527)
T ss_pred hhhhhcCCceEcceeCCCCEEEE----ECCCCcccCCEecCC
Confidence 64432 68999999999987 345678899999763
No 209
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.33 E-value=1.6e-06 Score=65.43 Aligned_cols=72 Identities=22% Similarity=0.212 Sum_probs=50.6
Q ss_pred eEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cc-hHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 139 AHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQ-TREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 139 ~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~-~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
.+..+...+.++.+.||||+..|.......+..+|++++|+|+.+... .. ..++.+.+.. .+.| +++++||+
T Consensus 50 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~ 126 (174)
T cd04153 50 NVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQ 126 (174)
T ss_pred ceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECC
Confidence 344566667889999999999887777777899999999999876532 11 1223333322 2466 88999996
No 210
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.33 E-value=3.9e-06 Score=74.98 Aligned_cols=89 Identities=20% Similarity=0.154 Sum_probs=66.7
Q ss_pred CCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc------------eecceecc
Q psy9646 15 VRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH------------KILDEAQA 82 (211)
Q Consensus 15 ~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~------------~~~~~a~~ 82 (211)
.++.+.|++++|.+++..++.|++++|+|.+|++++||.+.+.|.+....++|+++...+ +.+++|.|
T Consensus 226 ~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~ 305 (586)
T PRK04004 226 KIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVA 305 (586)
T ss_pred ccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCC
Confidence 345678999999999999999999999999999999999999998644567999998762 34556666
Q ss_pred cCceehhccCCCccccccccccc
Q psy9646 83 GDQLGALVKGMKRDEVNRGLIMA 105 (211)
Q Consensus 83 G~~v~~~l~~~~~~~v~~G~ii~ 105 (211)
...|-+...+++ .+..|+.+.
T Consensus 306 ~~~v~i~~~gl~--~~~~g~~~~ 326 (586)
T PRK04004 306 AAGVKISAPDLE--DALAGSPLR 326 (586)
T ss_pred CCceEEEeCCcc--ccCCCCeEE
Confidence 555554323332 335565543
No 211
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.31 E-value=2.5e-06 Score=66.21 Aligned_cols=65 Identities=17% Similarity=0.313 Sum_probs=46.3
Q ss_pred CCceeEeecCCcccccHhHHhhhcccc-ceEEEEEeccCCCC--cchHHHHHH-H---HH--cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQM-DGAILVVAATDGAM--PQTREHLLL-A---KQ--IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~-d~~~~vvd~~~~~~--~~~~~~~~~-~---~~--~~~~~~i~~inK~ 211 (211)
.+..+.++|||||.+|.......+..+ +++++|+|+..... ....+.+.. + .. .++| +++++||+
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~p-vliv~NK~ 119 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIP-VLIACNKQ 119 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCC-EEEEecch
Confidence 356789999999999988888888888 99999999977631 112222221 1 11 3677 88999995
No 212
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.31 E-value=1.3e-06 Score=64.70 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=45.2
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
.++.++||||+++|.......+..+|++++|+|+.+...-+ ...++..+.+ .++| +++++||+
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~ 117 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP-MILVGNKA 117 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCC-EEEEeeCc
Confidence 46888999999999887777888999999999987643211 1222222222 3667 88899996
No 213
>PRK04213 GTP-binding protein; Provisional
Probab=98.30 E-value=3e-06 Score=65.34 Aligned_cols=95 Identities=19% Similarity=0.248 Sum_probs=55.5
Q ss_pred hhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCccc-----------ccHhH----HhhhccccceEE
Q psy9646 112 KKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHA-----------DYIKN----MITGTSQMDGAI 176 (211)
Q Consensus 112 ~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~-----------~~~~~----~~~~~~~~d~~~ 176 (211)
.|++++...+.....+....++.+...... ... .+.++||||+. .|... +..++..+|+++
T Consensus 20 ~GKSsLin~l~~~~~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 95 (201)
T PRK04213 20 VGKSTLVRELTGKKVRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAV 95 (201)
T ss_pred CCHHHHHHHHhCCCCccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEE
Confidence 344444433322222233344555554332 222 68999999952 22111 223566789999
Q ss_pred EEEeccCC-----------CCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 177 LVVAATDG-----------AMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 177 ~vvd~~~~-----------~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+|+... ....+.+++..+...++| +++++||+
T Consensus 96 ~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~ 140 (201)
T PRK04213 96 LVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP-PIVAVNKM 140 (201)
T ss_pred EEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC-eEEEEECc
Confidence 99998642 122456677777778888 77999996
No 214
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.29 E-value=2.8e-06 Score=63.39 Aligned_cols=73 Identities=14% Similarity=0.015 Sum_probs=48.8
Q ss_pred EeEEEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHH---HcCCCeEEEEEeCC
Q psy9646 138 VAHVEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAK---QIGVTNIVVFINKF 211 (211)
Q Consensus 138 ~~~~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~---~~~~~~~i~~inK~ 211 (211)
.....+...+ ..+.+.||||+..|.......+..+|++++++|...+..... ..++..++ ..++| ++++.||+
T Consensus 44 ~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-~i~v~NK~ 122 (169)
T cd04114 44 FMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVI-TILVGNKI 122 (169)
T ss_pred EEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECc
Confidence 3333444444 346778999999998888888999999999999875532211 22322222 23566 67899995
No 215
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.28 E-value=3.7e-06 Score=63.00 Aligned_cols=63 Identities=22% Similarity=0.140 Sum_probs=45.9
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
.++.+.||||+++|.......+..+|++++|+|+.....-+ -..++..++. .+.| ++++.||+
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~ 119 (168)
T cd01866 53 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKC 119 (168)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECc
Confidence 56889999999998887888889999999999987533222 2223333433 2566 78999995
No 216
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.28 E-value=3.7e-06 Score=62.21 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=45.3
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
...+.+.||||+++|.......++.+|++++|.|+.+...-+. ..++..+.. .++| ++++.||+
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~ 116 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKI 116 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECh
Confidence 3568899999999888777778899999999999865432221 122222221 3677 78999995
No 217
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.28 E-value=2.9e-06 Score=63.62 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=49.6
Q ss_pred EeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 142 EYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
.+...+..+.+.||||+..|......-+..+|++++|+|+...-. ...+..+..+.. .+.| +++++||+
T Consensus 37 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~ 110 (167)
T cd04161 37 KLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQ 110 (167)
T ss_pred EEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCc-EEEEEeCC
Confidence 455577889999999999887776777889999999999876432 222333333322 3566 88999995
No 218
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.26 E-value=5.5e-06 Score=62.15 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=58.6
Q ss_pred hhhhhhcccccccccchhhcccceEEeEeEEEeeeCC--ceeEeecCCcccccHhH-HhhhccccceEEEEEeccCCCCc
Q psy9646 111 DKKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN--RHYSHTDCPGHADYIKN-MITGTSQMDGAILVVAATDGAMP 187 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~--~~~~~iDtPG~~~~~~~-~~~~~~~~d~~~~vvd~~~~~~~ 187 (211)
..|++++..++.....+.+.......+.....+...+ ..+.+.||||+.+|... ....+..+|++++|+|+.....-
T Consensus 12 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 91 (170)
T cd04115 12 NVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASF 91 (170)
T ss_pred CCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHH
Confidence 3455555544433333222222233333333344444 57889999999888644 44456789999999999765543
Q ss_pred ch-HHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 188 QT-REHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 188 ~~-~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
+. ..++..+.. .++| ++++.||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~p-~iiv~nK~ 119 (170)
T cd04115 92 HSLPSWIEECEQHSLPNEVP-RILVGNKC 119 (170)
T ss_pred HhHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 33 234444443 2467 78999995
No 219
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.26 E-value=1.7e-06 Score=66.78 Aligned_cols=63 Identities=21% Similarity=0.028 Sum_probs=44.1
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHH----HcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAK----QIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~----~~~~~~~i~~inK~ 211 (211)
..+.++||||+..|-......+..+|++++|+|+.+...-+ ...++..+. ..++| +|+++||+
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~ 114 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVP-IVVVGNKA 114 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEcc
Confidence 46789999999988766667788999999999987643211 222222222 24677 78999996
No 220
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.26 E-value=4.8e-06 Score=62.20 Aligned_cols=63 Identities=17% Similarity=0.068 Sum_probs=43.7
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchH-HHHH-HHHH------cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTR-EHLL-LAKQ------IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~-~~~~-~~~~------~~~~~~i~~inK~ 211 (211)
.++.+.||||+..|.......++.+|++++++|+.....-+.. .+.. .... .++| +++++||+
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 119 (172)
T cd01862 49 VTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFP-FVVLGNKI 119 (172)
T ss_pred EEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCce-EEEEEECc
Confidence 4567899999998887777788999999999998765421111 1111 1222 1567 78899995
No 221
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.26 E-value=2.3e-06 Score=71.91 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=50.1
Q ss_pred ceEEeEeEEEeee-CCceeEeecCCcc-cc----c---HhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHHc---
Q psy9646 133 GITINVAHVEYAT-ENRHYSHTDCPGH-AD----Y---IKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQI--- 199 (211)
Q Consensus 133 g~tv~~~~~~~~~-~~~~~~~iDtPG~-~~----~---~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~~--- 199 (211)
+.|.+.....+.. .+.++.|+||||. .+ + .+.++..+..||++++|+|+.+...... ..+...++..
T Consensus 221 ~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~ 300 (351)
T TIGR03156 221 FATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAE 300 (351)
T ss_pred ccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccC
Confidence 3455555555555 4578999999997 22 1 2334455778999999999987654322 2223344433
Q ss_pred CCCeEEEEEeCC
Q psy9646 200 GVTNIVVFINKF 211 (211)
Q Consensus 200 ~~~~~i~~inK~ 211 (211)
+.| +++|+||+
T Consensus 301 ~~p-iIlV~NK~ 311 (351)
T TIGR03156 301 DIP-QLLVYNKI 311 (351)
T ss_pred CCC-EEEEEEee
Confidence 566 78999996
No 222
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.25 E-value=5.2e-06 Score=61.83 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=45.4
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
..++.+.||||+++|......-+..+|++++|+|+.+... ..-..++..+.. .+.| ++++.||+
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~ 117 (166)
T cd01869 50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKC 117 (166)
T ss_pred EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECh
Confidence 3468899999999988777777889999999999875421 112223333333 2466 78899995
No 223
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.23 E-value=3.5e-06 Score=63.41 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=47.1
Q ss_pred eeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHH-HHHHH---HHcCCCeEEEEEeCC
Q psy9646 143 YATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTRE-HLLLA---KQIGVTNIVVFINKF 211 (211)
Q Consensus 143 ~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~-~~~~~---~~~~~~~~i~~inK~ 211 (211)
+...+..+.+.||||++.|.......+..+|++++|+|+...-. ..... +...+ ...+.| +++++||+
T Consensus 53 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~ 125 (173)
T cd04154 53 LEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT-LLILANKQ 125 (173)
T ss_pred EEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECc
Confidence 34456788999999999887666677889999999999876521 11122 22222 224666 88999996
No 224
>PRK11058 GTPase HflX; Provisional
Probab=98.23 E-value=3.4e-06 Score=72.61 Aligned_cols=103 Identities=13% Similarity=0.038 Sum_probs=58.8
Q ss_pred chhhhhhhhcccccccccchhhcccceEEeEeEEEeeeCC-ceeEeecCCccccc--------HhHHhhhccccceEEEE
Q psy9646 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN-RHYSHTDCPGHADY--------IKNMITGTSQMDGAILV 178 (211)
Q Consensus 108 ~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~-~~~~~iDtPG~~~~--------~~~~~~~~~~~d~~~~v 178 (211)
+.+..|++++...+.-.........+.|++.....+...+ ..+.++||||.... +..+......+|++++|
T Consensus 204 G~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~V 283 (426)
T PRK11058 204 GYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHV 283 (426)
T ss_pred CCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEE
Confidence 3344555554443322111111222345554444555444 37899999997321 23345567889999999
Q ss_pred EeccCCCCcchH----HHHHHHHHcCCCeEEEEEeCC
Q psy9646 179 VAATDGAMPQTR----EHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 179 vd~~~~~~~~~~----~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+.+....... .++..+...+.| +++|+||+
T Consensus 284 vDaS~~~~~e~l~~v~~iL~el~~~~~p-vIiV~NKi 319 (426)
T PRK11058 284 VDAADVRVQENIEAVNTVLEEIDAHEIP-TLLVMNKI 319 (426)
T ss_pred EeCCCccHHHHHHHHHHHHHHhccCCCC-EEEEEEcc
Confidence 999876443322 233444334567 77999996
No 225
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.22 E-value=3.7e-06 Score=64.11 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=48.2
Q ss_pred EeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHH-HHHHHH---HcCCCeEEEEEeCC
Q psy9646 142 EYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTRE-HLLLAK---QIGVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~-~~~~~~---~~~~~~~i~~inK~ 211 (211)
.+...+.++.++||||++.+.......+..+|++++|+|+.+... ...+. +.+.+. ..+.| +++++||+
T Consensus 55 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~ 128 (184)
T smart00178 55 ELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP-FLILGNKI 128 (184)
T ss_pred EEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCc
Confidence 344567789999999999887767777889999999999975421 12222 222222 24677 88999995
No 226
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.21 E-value=1e-05 Score=61.92 Aligned_cols=64 Identities=16% Similarity=0.364 Sum_probs=46.6
Q ss_pred CceeEeecCCccc----------cc---HhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHA----------DY---IKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~----------~~---~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.++.++||||+. .+ ....+.....++++++++|+..+....+.++.+.+...+.| +++++||+
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~-~iiv~nK~ 145 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIP-VLIVLTKA 145 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCc-EEEEEECc
Confidence 4689999999963 22 22233444456789999998887766666677788888888 77899996
No 227
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.20 E-value=8.6e-06 Score=72.70 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=52.5
Q ss_pred CCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc
Q psy9646 16 RDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH 74 (211)
Q Consensus 16 ~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~ 74 (211)
...++|++++|.+++..+|.|++++|.|.+|.+++||.+.+.|.+....++|+++...+
T Consensus 225 ~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~ 283 (590)
T TIGR00491 225 LEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPR 283 (590)
T ss_pred cCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCC
Confidence 35678999999999999999999999999999999999999998655578999997654
No 228
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.19 E-value=4.4e-06 Score=63.62 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=44.6
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chH----HHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTR----EHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~----~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+..+.+.||||++.|.......+..+|++++|+|+...-.- ... ++.......+.| +++++||+
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~ 119 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQ 119 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc-EEEEEECc
Confidence 446789999999988866555557789999999998764211 111 122222335677 78999996
No 229
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.19 E-value=4e-06 Score=62.06 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=45.3
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHH----HcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAK----QIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~----~~~~~~~i~~inK~ 211 (211)
..++.+.||||+..|.......++.+|++++++|+.....-+. ..++..+. ..+.| ++++.||+
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~ 116 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKI 116 (161)
T ss_pred EEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECC
Confidence 3568899999999888777777889999999999865443222 22333332 23566 77899995
No 230
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.17 E-value=5.2e-06 Score=62.30 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=48.8
Q ss_pred EEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-CcchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 141 VEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 141 ~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-~~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..++..+.++.+.||||++++.......+..+|++++|+|+.+.. .......+..+.+ .+.| ++++.||+
T Consensus 36 ~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~ 110 (169)
T cd04158 36 ETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL-LLIFANKQ 110 (169)
T ss_pred EEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCC-EEEEEeCc
Confidence 345567788999999999988777767788999999999986542 1222232232321 2355 88999995
No 231
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.17 E-value=6.7e-06 Score=63.03 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=45.9
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
..++.+.||||+..|.......+..+|++++|+|+.....- ..+.++..+... ++| ++++.||+
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~ 116 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKA 116 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcc
Confidence 35788999999998877777778899999999998764321 123334444332 466 88999995
No 232
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=98.16 E-value=2.8e-05 Score=52.69 Aligned_cols=75 Identities=24% Similarity=0.387 Sum_probs=52.5
Q ss_pred EeeEEeec-CCcEEEEEEEEEEEEecCCEEEEeecC-------ceeeEEEEEEEecc----eecceecccCceehhccCC
Q psy9646 26 VEHTYSIP-GRGTVVTGRLERGIVKKGMECEFTGYG-------RQFKTTVTGIEMFH----KILDEAQAGDQLGALVKGM 93 (211)
Q Consensus 26 v~~~~~~~-~~G~v~~G~v~~G~i~~g~~v~i~p~~-------~~~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~ 93 (211)
|.-+...+ +.|++..+||.+|.++.|+.+.+...+ +..+.++..+.... .++++|.|||++.+. +
T Consensus 5 v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~--g- 81 (93)
T cd03700 5 VTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV--G- 81 (93)
T ss_pred EEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE--C-
Confidence 44444455 789999999999999999999875411 12345677775544 688999999999872 2
Q ss_pred Ccccccccccc
Q psy9646 94 KRDEVNRGLIM 104 (211)
Q Consensus 94 ~~~~v~~G~ii 104 (211)
..++..|++.
T Consensus 82 -~~~~~~g~~~ 91 (93)
T cd03700 82 -LDQLKSGTTA 91 (93)
T ss_pred -CccCceEeEe
Confidence 2345566543
No 233
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.16 E-value=1.1e-05 Score=62.18 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=55.0
Q ss_pred cceEEeEeEEEeeeCCceeEeecCCccccc-----------HhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHc-
Q psy9646 132 RGITINVAHVEYATENRHYSHTDCPGHADY-----------IKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQI- 199 (211)
Q Consensus 132 rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~-----------~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~- 199 (211)
++.|........++.+.+++++||||..+. .+.+..+...+|++++|+++.. ....++..++.+++.
T Consensus 33 ~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~f 111 (196)
T cd01852 33 SSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELF 111 (196)
T ss_pred CCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHh
Confidence 345555556666778899999999997653 1223334567899999999987 777778888877663
Q ss_pred C---CCeEEEEEeC
Q psy9646 200 G---VTNIVVFINK 210 (211)
Q Consensus 200 ~---~~~~i~~inK 210 (211)
| .+++|+++||
T Consensus 112 g~~~~~~~ivv~T~ 125 (196)
T cd01852 112 GEKVLDHTIVLFTR 125 (196)
T ss_pred ChHhHhcEEEEEEC
Confidence 3 2346677776
No 234
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.16 E-value=6.1e-06 Score=60.32 Aligned_cols=68 Identities=18% Similarity=0.158 Sum_probs=48.5
Q ss_pred eeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 143 YATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 143 ~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
...+...+.+.||||+..|.......+..+|++++|+|+..... .+.+..+..+.. .+.| +++++||+
T Consensus 39 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~ 111 (159)
T cd04159 39 VTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIP-LLVLGNKN 111 (159)
T ss_pred EEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCc
Confidence 44456788999999999988888888899999999999865321 222233333221 4667 77899995
No 235
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.15 E-value=1e-05 Score=60.50 Aligned_cols=63 Identities=19% Similarity=0.093 Sum_probs=44.8
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
..+.+.||||+++|.......+..+|+++++.|+.+...- .-..++..+.. .+.| ++++.||+
T Consensus 52 ~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~ 118 (167)
T cd01867 52 IKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKC 118 (167)
T ss_pred EEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECc
Confidence 4678899999999887777778999999999998654321 11233333333 3466 77899995
No 236
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=2.1e-05 Score=71.19 Aligned_cols=101 Identities=24% Similarity=0.332 Sum_probs=79.0
Q ss_pred hHHHHHhhhCCCCCC--------------------CCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCc
Q psy9646 2 ELLNQIDTYIPQPVR--------------------DLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGR 61 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~--------------------~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~ 61 (211)
.||+++..++|.|.. +.++||.+.+..+...++.|....+||-||.++.|+.+.....+
T Consensus 268 ~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~- 346 (697)
T COG0480 268 PLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKG- 346 (697)
T ss_pred HHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCC-
Confidence 588999998887721 23689999999999999999988899999999999977765544
Q ss_pred eeeEEEEEEEecc----eecceecccCceehhccCCCcccccccccccccc
Q psy9646 62 QFKTTVTGIEMFH----KILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPV 108 (211)
Q Consensus 62 ~~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~ 108 (211)
.+.+|..|...+ .+++++.|||++++ .+..+...|+++++..
T Consensus 347 -~~erv~~l~~~~~~~~~~v~~~~AG~I~a~----~Gl~~~~tGdTl~~~~ 392 (697)
T COG0480 347 -KKERVGRLLLMHGNEREEVDEVPAGDIVAL----VGLKDATTGDTLCDEN 392 (697)
T ss_pred -ccEEEEEEEEccCCceeecccccCccEEEE----EcccccccCCeeecCC
Confidence 367777776554 68999999999987 2334556777777544
No 237
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.12 E-value=4.9e-06 Score=62.01 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=43.5
Q ss_pred eecCCcc----cccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 152 HTDCPGH----ADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 152 ~iDtPG~----~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++||||. .++.+++..++..+|++++|+|+.++.......+++. ..+.| +++++||+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~-ii~v~nK~ 101 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKR-QIAVISKT 101 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCC-eEEEEEcc
Confidence 6999996 4677888888999999999999987765555444432 23556 78999995
No 238
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.11 E-value=1.2e-05 Score=59.68 Aligned_cols=100 Identities=14% Similarity=0.056 Sum_probs=57.9
Q ss_pred hhhhhhcccccccccchhhcccceEEeEeEEEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc
Q psy9646 111 DKKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ 188 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~ 188 (211)
..|++.+...+.......+..+....+.....+..++ ..+.+.||||+..+.......+..+|++++|.|+.+...-+
T Consensus 13 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~ 92 (165)
T cd01868 13 GVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFE 92 (165)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHH
Confidence 4455555544432222222222233333333333444 46789999999988777777788999999999987533221
Q ss_pred -hHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 189 -TREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 189 -~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
-.+++..+.. .+.| ++++.||+
T Consensus 93 ~~~~~~~~~~~~~~~~~p-i~vv~nK~ 118 (165)
T cd01868 93 NVERWLKELRDHADSNIV-IMLVGNKS 118 (165)
T ss_pred HHHHHHHHHHHhCCCCCe-EEEEEECc
Confidence 1223333333 2455 88899995
No 239
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.10 E-value=8.4e-06 Score=60.96 Aligned_cols=69 Identities=23% Similarity=0.257 Sum_probs=49.5
Q ss_pred EeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHH-HH-cCCCeEEEEEeCC
Q psy9646 142 EYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLA-KQ-IGVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~-~~-~~~~~~i~~inK~ 211 (211)
.+..++.++.+.||||+.+|.......+..+|++++|+|+.+... ...+..+..+ .. .++| ++++.||+
T Consensus 38 ~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~ 109 (164)
T cd04162 38 AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQ 109 (164)
T ss_pred EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCc
Confidence 345567789999999999987777777899999999999876532 2222222333 22 4666 88999995
No 240
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.10 E-value=9.9e-06 Score=60.85 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=47.4
Q ss_pred eeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-CcchHHHH-HHHHH---cCCCeEEEEEeCC
Q psy9646 143 YATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-MPQTREHL-LLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 143 ~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-~~~~~~~~-~~~~~---~~~~~~i~~inK~ 211 (211)
+...+..+.+.||||++.|-......+..+|++++|+|+.+.. .......+ +.+.. .++| ++++.||+
T Consensus 48 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~ 120 (168)
T cd04149 48 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL-LLVFANKQ 120 (168)
T ss_pred EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCc-EEEEEECc
Confidence 3446678999999999988766666778999999999987642 12222222 33321 3466 88999995
No 241
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.09 E-value=1.8e-05 Score=58.58 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=45.4
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH--------cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ--------IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~--------~~~~~~i~~inK~ 211 (211)
....+.+.||||++.|.......+..+|++++|+|..+... .....++..+.. .+.| ++++.||+
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 120 (168)
T cd04119 47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIV-VVVCANKI 120 (168)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCce-EEEEEEch
Confidence 34578899999999888777777889999999999876432 112223333322 2345 88999995
No 242
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.08 E-value=2.1e-05 Score=59.17 Aligned_cols=64 Identities=20% Similarity=0.074 Sum_probs=45.3
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-CcchHHHHHHHHHcC---CCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQIG---VTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-~~~~~~~~~~~~~~~---~~~~i~~inK~ 211 (211)
.++.+.||||+++|.......+..+|++++|.|+.... ......++....+.. .+++|+|.||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~ 116 (170)
T cd04108 49 FSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKK 116 (170)
T ss_pred EEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEECh
Confidence 56889999999999877777789999999999996532 222233444433322 23378899995
No 243
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.07 E-value=0.00012 Score=66.93 Aligned_cols=195 Identities=14% Similarity=0.102 Sum_probs=109.6
Q ss_pred hHHHHHhhhCC--CCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc-eecc
Q psy9646 2 ELLNQIDTYIP--QPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH-KILD 78 (211)
Q Consensus 2 ~ll~~l~~~i~--~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~-~~~~ 78 (211)
+|+++|....+ .+..+.+.|+...|-+.+..++.|++++|+|.+|++++||.+.+.|. .++|+++...+ +++.
T Consensus 400 eLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~~----~gkVr~m~~~~~~~v~ 475 (742)
T CHL00189 400 KLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGTS----YAKIRGMINSLGNKIN 475 (742)
T ss_pred HHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECCc----ceEEEEEEcCCCcCcc
Confidence 35555544221 12234557888889888888999999999999999999999998874 57899998554 7899
Q ss_pred eecccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeee-CCce---eEeec
Q psy9646 79 EAQAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYAT-ENRH---YSHTD 154 (211)
Q Consensus 79 ~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~-~~~~---~~~iD 154 (211)
+|.||+.|.+ .++. .....|+.+..-.....++.-........ .....+..+.+-.+..... .... ++=-|
T Consensus 476 ~a~pgdiV~I--~gl~-~~~~~Gd~l~v~~~e~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad 550 (742)
T CHL00189 476 LATPSSVVEI--WGLS-SVPATGEHFQVFNSEKEAKLKIIKNKENN--KKDTTKRITLSTTKTINKKDNKKQINLIIKTD 550 (742)
T ss_pred EEcCCCceEe--cCcc-cCCCCCCEEEEeCCHHHHHHHHHHHHHHH--HHhhhcccchHHHHHHhhhcCCceeeEEEEeC
Confidence 9999999976 2221 23456777764322222111111000000 0000001110000000000 0111 23368
Q ss_pred CCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEe
Q psy9646 155 CPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFIN 209 (211)
Q Consensus 155 tPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~in 209 (211)
+-|--+-+.+.+..+..-.+-+=++.+.-|. -++.=..++...+ . +|+..|
T Consensus 551 ~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~--it~~Dv~lA~~~~-a-~ii~Fn 601 (742)
T CHL00189 551 TQGSIEAIINSISQIPQKKVQLNILYASLGE--VTETDVEFASTTN-A-EILAFN 601 (742)
T ss_pred CcchHHHHHHHHHhcCCCcEEEEEEEeecCC--CCHHHHHHHHhcC-C-EEEEee
Confidence 8887777777777776666777777775443 3333334444444 2 444444
No 244
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.07 E-value=1.8e-05 Score=58.66 Aligned_cols=65 Identities=15% Similarity=0.028 Sum_probs=46.6
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
...++.+.||||++.+.......+..+|++++|+|......- .-+.+++.+... +.| +++++||+
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 117 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKM 117 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECc
Confidence 346788999999988877777888999999999998654321 123344444333 466 78899995
No 245
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.07 E-value=1.1e-05 Score=59.90 Aligned_cols=68 Identities=22% Similarity=0.264 Sum_probs=47.0
Q ss_pred eeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-CcchHHHH-HHHHH---cCCCeEEEEEeCC
Q psy9646 143 YATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-MPQTREHL-LLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 143 ~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-~~~~~~~~-~~~~~---~~~~~~i~~inK~ 211 (211)
++....++.+.||||+..|.......+..+|++++|+|+...- ..+..+.+ +++.. .+.| ++++.||+
T Consensus 39 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~ 111 (159)
T cd04150 39 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV-LLVFANKQ 111 (159)
T ss_pred EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCC-EEEEEECC
Confidence 4446778999999999988776666789999999999986532 12222222 22221 2355 88999996
No 246
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.05 E-value=2.6e-05 Score=57.54 Aligned_cols=62 Identities=19% Similarity=0.405 Sum_probs=47.1
Q ss_pred eeEeecCCccccc-------------HhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 149 HYSHTDCPGHADY-------------IKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 149 ~~~~iDtPG~~~~-------------~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++.++||||+... ..........++++++++|..........++.+.+...+.| +++++||+
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~-vi~v~nK~ 120 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIP-FLVVLTKA 120 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCC-EEEEEEch
Confidence 8999999996542 12223444567889999999887777777788888888888 77899995
No 247
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.05 E-value=3e-05 Score=72.94 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=68.6
Q ss_pred CCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc------------eecceecc
Q psy9646 15 VRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH------------KILDEAQA 82 (211)
Q Consensus 15 ~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~------------~~~~~a~~ 82 (211)
....++|++++|.+++..+|.|++++|.|.+|.+++||.+.+.|.+....++|+++...+ +.+.++.|
T Consensus 681 ~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~ 760 (1049)
T PRK14845 681 KLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTA 760 (1049)
T ss_pred ccCCCCceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccC
Confidence 344678999999999999999999999999999999999999998655678999997421 35667777
Q ss_pred cCceehhccCCCcccccccccccc
Q psy9646 83 GDQLGALVKGMKRDEVNRGLIMAK 106 (211)
Q Consensus 83 G~~v~~~l~~~~~~~v~~G~ii~~ 106 (211)
+.-|.+...++ +.+..|+.+..
T Consensus 761 a~~vki~a~gl--~~~~aG~~~~v 782 (1049)
T PRK14845 761 AAGVKIAAPGL--EEVLAGSPIRI 782 (1049)
T ss_pred CCceEEecCCc--cccCCCCeEEE
Confidence 76666543333 34466766543
No 248
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.04 E-value=1.2e-05 Score=59.37 Aligned_cols=64 Identities=22% Similarity=0.244 Sum_probs=45.8
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHH-HHHHHHH---cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTRE-HLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~-~~~~~~~---~~~~~~i~~inK~ 211 (211)
...+.+.||||+..+.......+..+|++++|+|+.+... ..... +.+.++. .+.| +++++||+
T Consensus 43 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 111 (160)
T cd04156 43 HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP-VVLLANKQ 111 (160)
T ss_pred ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECc
Confidence 4678999999999887777777889999999999976541 11122 2222221 4667 88999995
No 249
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.04 E-value=3e-05 Score=60.10 Aligned_cols=64 Identities=16% Similarity=0.015 Sum_probs=47.8
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
...+.+.||||+++|.......+..+|++++|.|......-+ .+.++..+.+ .++| +++|.||+
T Consensus 43 ~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~p-iilvgNK~ 109 (200)
T smart00176 43 PIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIP-IVLCGNKV 109 (200)
T ss_pred EEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC-EEEEEECc
Confidence 457889999999999877777889999999999998765322 2234443443 3577 88999996
No 250
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.04 E-value=3.3e-05 Score=59.96 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=48.4
Q ss_pred EeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 142 EYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
.+..++ ..+.+.||+|++.|......-++.+|++++|.|..+...-+ ...++..+.. .++| ++++.||+
T Consensus 41 ~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~p-iilVgNK~ 115 (202)
T cd04120 41 TVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKL 115 (202)
T ss_pred EEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECc
Confidence 344444 56789999999998877777788999999999987654322 2233344433 2466 88999995
No 251
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.04 E-value=2.2e-05 Score=59.29 Aligned_cols=69 Identities=23% Similarity=0.240 Sum_probs=47.5
Q ss_pred EeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-CcchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 142 EYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-~~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
.+...+..+.+.||||+..+......-+..+|++++|+|+.+.. .....+.+..+.. .+.| ++++.||+
T Consensus 51 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~ 124 (175)
T smart00177 51 TVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVFANKQ 124 (175)
T ss_pred EEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCc-EEEEEeCc
Confidence 34456778999999999988765555578999999999986542 1222333333321 2456 88999995
No 252
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.03 E-value=1e-05 Score=58.09 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=48.7
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHH-----HHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREH-----LLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~-----~~~~~~~~~~~~i~~inK~ 211 (211)
...+.++|+||+..+.......+..+|++++|+|+..+........ .......+.| +++++||+
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~ 112 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIP-IILVGNKI 112 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCc-EEEEEecc
Confidence 5679999999999888877888899999999999987654443332 2233445666 88999995
No 253
>PTZ00099 rab6; Provisional
Probab=98.03 E-value=1.7e-05 Score=60.23 Aligned_cols=65 Identities=17% Similarity=0.104 Sum_probs=45.9
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHH-HHc--CCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLA-KQI--GVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~-~~~--~~~~~i~~inK~ 211 (211)
...++.|.||||++.|.......+..+|++++|+|...... .....++..+ ... ++| +|++.||+
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~p-iilVgNK~ 95 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVI-IALVGNKT 95 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECc
Confidence 34678899999999988777777899999999999876432 2222333333 322 345 78899995
No 254
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.02 E-value=7.7e-06 Score=59.34 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=42.1
Q ss_pred EeecCCccc----ccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 151 SHTDCPGHA----DYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 151 ~~iDtPG~~----~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++||||.. .+.+.+...+..+|++++|+|+.++...++..+.+. .+.| +|+++||+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p-~ilv~NK~ 98 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKP-VIGLVTKI 98 (142)
T ss_pred eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCC-eEEEEEee
Confidence 689999973 445555567889999999999988876665544433 2346 77899996
No 255
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.01 E-value=1.9e-05 Score=59.00 Aligned_cols=65 Identities=20% Similarity=0.152 Sum_probs=47.9
Q ss_pred CceeEeecCCcccccH----hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYI----KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~----~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
...+.|+||||..... ..+..-+..+|++++|+++.......+.+.+........+.+|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 4569999999975422 3456666899999999999988876666666656555556688899995
No 256
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.01 E-value=3.6e-05 Score=57.32 Aligned_cols=63 Identities=16% Similarity=0.108 Sum_probs=45.3
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
..+.+.||||+.+|.......+..+|++++|+|...... .....+++.+... ..| ++++.||+
T Consensus 50 ~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~ 116 (165)
T cd01865 50 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VILVGNKC 116 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCC-EEEEEECc
Confidence 568899999999988777778899999999999865422 1223334444332 345 88999996
No 257
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.01 E-value=3.2e-05 Score=59.77 Aligned_cols=64 Identities=14% Similarity=0.015 Sum_probs=44.3
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHH-------HcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAK-------QIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~-------~~~~~~~i~~inK~ 211 (211)
...+.+.||||++.|......-+..+|++++|+|......-+ ...+...+. ..++| ++++.||+
T Consensus 49 ~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~ 120 (201)
T cd04107 49 VVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKC 120 (201)
T ss_pred EEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCc-EEEEEECC
Confidence 456789999999988776677788999999999986543211 112222222 13567 88999995
No 258
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.01 E-value=3e-05 Score=59.86 Aligned_cols=63 Identities=22% Similarity=0.134 Sum_probs=44.5
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
..+.+.||||++.|......-+..+|++++|+|+.+...-+ ...++..+... ..| ++++.||+
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~p-iivVgNK~ 120 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVC-KVLVGNKN 120 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECc
Confidence 45789999999988777777788899999999987643211 22333433332 355 77899995
No 259
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.00 E-value=2.9e-05 Score=57.17 Aligned_cols=63 Identities=27% Similarity=0.233 Sum_probs=43.6
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
..+.+.||||+..+.......+..+|++++|+|..++..-+. +.+++.+.. .++| +++++||+
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~ 115 (162)
T cd04123 49 IDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKI 115 (162)
T ss_pred EEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECc
Confidence 468899999998877666666789999999999876543222 223233322 2466 78899995
No 260
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.00 E-value=2.5e-05 Score=58.26 Aligned_cols=65 Identities=18% Similarity=0.097 Sum_probs=47.5
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH------cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ------IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~------~~~~~~i~~inK~ 211 (211)
....+.+.||||+++|.......+..+|++++|.|......- ..+.+++.++. .++| ++++.||+
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~ 118 (165)
T cd04140 47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP-IMLVGNKC 118 (165)
T ss_pred EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECc
Confidence 345688999999999887777778899999999998765432 23344444443 3567 78999995
No 261
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.99 E-value=1.3e-05 Score=61.21 Aligned_cols=70 Identities=21% Similarity=0.251 Sum_probs=48.0
Q ss_pred EEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHH----HcCCCeEEEEEeCC
Q psy9646 141 VEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAK----QIGVTNIVVFINKF 211 (211)
Q Consensus 141 ~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~----~~~~~~~i~~inK~ 211 (211)
..+...+..+.+.||||+..+.......+..+|++++|+|+.+... ......+..+. ..+.| ++++.||+
T Consensus 56 ~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-vivv~NK~ 130 (190)
T cd00879 56 EELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP-FLILGNKI 130 (190)
T ss_pred EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC-EEEEEeCC
Confidence 4455566788899999998887666677789999999999875421 11222222222 24567 78899995
No 262
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.99 E-value=2.8e-05 Score=58.15 Aligned_cols=64 Identities=14% Similarity=0.041 Sum_probs=44.2
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
...+.+.||||++++......-+..+|++++|+|......-+. +.++..+.+. ++| ++++.||+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iiiv~nK~ 114 (166)
T cd00877 48 KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIP-IVLCGNKV 114 (166)
T ss_pred EEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEch
Confidence 3567889999998876555556678999999999876543222 2233333332 577 88999995
No 263
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.99 E-value=1.6e-05 Score=60.49 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=47.5
Q ss_pred EeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-CcchHH-HHHHHHH---cCCCeEEEEEeCC
Q psy9646 142 EYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-MPQTRE-HLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-~~~~~~-~~~~~~~---~~~~~~i~~inK~ 211 (211)
.+...+..+.+.||||++.+......-+..+|++++|+|+.+.- ...... +.+.+.. ...| ++++.||.
T Consensus 55 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~ 128 (182)
T PTZ00133 55 TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQ 128 (182)
T ss_pred EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCC
Confidence 34556788999999999988776677789999999999986432 111222 3223222 2355 88999995
No 264
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.99 E-value=1.7e-05 Score=59.74 Aligned_cols=63 Identities=21% Similarity=0.158 Sum_probs=45.7
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+.+.||||..+|.......+..+|++++|.|..+...-+. ..+.+.+.. .++| ++++.||+
T Consensus 50 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~ 117 (172)
T cd04141 50 ALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKV 117 (172)
T ss_pred EEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEECh
Confidence 467889999999887777777889999999999876654332 223233322 3567 88999995
No 265
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.98 E-value=2.8e-05 Score=63.57 Aligned_cols=102 Identities=17% Similarity=0.135 Sum_probs=62.7
Q ss_pred cchhhhhhhhcccccccccchhhcc-cc-eEEeEeEEEeeeCCceeEeecCCcccc--------cHhHHhhhccc-cceE
Q psy9646 107 PVLADKKLAKVKQYADIDNAPEEKA-RG-ITINVAHVEYATENRHYSHTDCPGHAD--------YIKNMITGTSQ-MDGA 175 (211)
Q Consensus 107 ~~~~~~~~~~f~~~i~~~~~~~e~~-rg-~tv~~~~~~~~~~~~~~~~iDtPG~~~--------~~~~~~~~~~~-~d~~ 175 (211)
.+.|..|+++|...+ ...+.|.. -. +|=.+..+.++.+..++=+|||||.-| -..++..|+.. .+++
T Consensus 174 aG~PNVGKSSlv~~l--T~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~I 251 (346)
T COG1084 174 AGYPNVGKSSLVRKL--TTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVI 251 (346)
T ss_pred ecCCCCcHHHHHHHH--hcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeE
Confidence 355667777776544 22222222 12 233455667777888899999999543 24667788875 5799
Q ss_pred EEEEeccCC--CCcchH-HHHHHHHH-cCCCeEEEEEeCC
Q psy9646 176 ILVVAATDG--AMPQTR-EHLLLAKQ-IGVTNIVVFINKF 211 (211)
Q Consensus 176 ~~vvd~~~~--~~~~~~-~~~~~~~~-~~~~~~i~~inK~ 211 (211)
+|++|..+. ..-..+ .+++..+. .+.| +++|+||+
T Consensus 252 lF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p-~v~V~nK~ 290 (346)
T COG1084 252 LFLFDPSETCGYSLEEQISLLEEIKELFKAP-IVVVINKI 290 (346)
T ss_pred EEEEcCccccCCCHHHHHHHHHHHHHhcCCC-eEEEEecc
Confidence 999998743 332222 23444433 4444 88999996
No 266
>PTZ00369 Ras-like protein; Provisional
Probab=97.98 E-value=1.1e-05 Score=61.74 Aligned_cols=64 Identities=14% Similarity=0.048 Sum_probs=45.5
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
...+.+.||||+++|.......+..+|++++|+|+..... .....+...+.+ .++| ++++.||+
T Consensus 52 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~ 120 (189)
T PTZ00369 52 TCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVP-MILVGNKC 120 (189)
T ss_pred EEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 3457789999999998777777889999999999875532 122233333322 2567 88899995
No 267
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.98 E-value=8.2e-06 Score=61.97 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=41.7
Q ss_pred CCceeEeecCCcccccHhHHhhh---ccccceEEEEEeccCCCCcchHHHHHHHHH--------cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITG---TSQMDGAILVVAATDGAMPQTREHLLLAKQ--------IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~---~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~--------~~~~~~i~~inK~ 211 (211)
....+.++|+|||.++-...... +..+.+++||||+.. ...+-++.++.+.. .+.+++.+++||.
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~ 122 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQ 122 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-T
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCc
Confidence 44678999999999987777766 788999999999863 11222333333311 1334488899994
No 268
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.97 E-value=2.1e-05 Score=59.86 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=46.8
Q ss_pred EeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHH-HHHHHHH---cCCCeEEEEEeCC
Q psy9646 142 EYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTRE-HLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~-~~~~~~~---~~~~~~i~~inK~ 211 (211)
.++..+..+.+.||||+..|......-+..+|++++|+|+.+... ..... +...+.. .+.| ++++.||+
T Consensus 55 ~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~p-iilv~NK~ 128 (181)
T PLN00223 55 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQ 128 (181)
T ss_pred EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCC-EEEEEECC
Confidence 455667789999999998887655556789999999999875432 11122 2222211 2456 88999996
No 269
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.97 E-value=0.0001 Score=50.05 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=47.0
Q ss_pred EEEeeEEeecCC-cEEEEEEEEEEEEecCCEEEEeecC-------ceeeEEEEEEEecc----eecceecccCceeh
Q psy9646 24 LPVEHTYSIPGR-GTVVTGRLERGIVKKGMECEFTGYG-------RQFKTTVTGIEMFH----KILDEAQAGDQLGA 88 (211)
Q Consensus 24 ~~v~~~~~~~~~-G~v~~G~v~~G~i~~g~~v~i~p~~-------~~~~~~v~~i~~~~----~~~~~a~~G~~v~~ 88 (211)
..|..+...++. |.+..|||-+|.++.|+.|.+.-.+ .....+|..|.... .++++|.|||++++
T Consensus 3 a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v 79 (94)
T cd04090 3 VHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLI 79 (94)
T ss_pred EEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEE
Confidence 345555555665 6689999999999999999773211 11246677776554 68999999999987
No 270
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.97 E-value=5.8e-05 Score=61.42 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=50.3
Q ss_pred eEEeEeEEEeeeCC--ceeEeecCCcccccHh---------------------HHh-----hhcc--ccceEEEEEecc-
Q psy9646 134 ITINVAHVEYATEN--RHYSHTDCPGHADYIK---------------------NMI-----TGTS--QMDGAILVVAAT- 182 (211)
Q Consensus 134 ~tv~~~~~~~~~~~--~~~~~iDtPG~~~~~~---------------------~~~-----~~~~--~~d~~~~vvd~~- 182 (211)
..+......++..+ .++.++||||..++.. +.. .... .+|++++++++.
T Consensus 47 ~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~ 126 (276)
T cd01850 47 VEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG 126 (276)
T ss_pred eEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC
Confidence 33444444444444 4689999999665421 111 1222 478999999876
Q ss_pred CCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 183 DGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++...+.+.++.+.. ++| +|+|+||+
T Consensus 127 ~~l~~~D~~~lk~l~~-~v~-vi~VinK~ 153 (276)
T cd01850 127 HGLKPLDIEFMKRLSK-RVN-IIPVIAKA 153 (276)
T ss_pred CCCCHHHHHHHHHHhc-cCC-EEEEEECC
Confidence 4777777888888875 778 78999996
No 271
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.96 E-value=5.6e-05 Score=56.43 Aligned_cols=63 Identities=17% Similarity=0.009 Sum_probs=42.4
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHH-------HcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAK-------QIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~-------~~~~~~~i~~inK~ 211 (211)
..+.+.||||++.|.......+..+|+++++.|......-+ -..+...+. ..++| ++++.||+
T Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 124 (170)
T cd04116 54 VTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKN 124 (170)
T ss_pred EEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECc
Confidence 45677899999988777777788999999999876543211 112222221 13467 88999995
No 272
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.96 E-value=3.7e-05 Score=57.28 Aligned_cols=64 Identities=17% Similarity=0.101 Sum_probs=45.4
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
...+.+.||||+..|......-++.+|++++|+|..+...- .-..++..... .+.| ++++.||+
T Consensus 50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iiiv~nK~ 117 (166)
T cd04122 50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKA 117 (166)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECc
Confidence 34678899999999988887888999999999998764321 12233333322 2345 88899995
No 273
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.95 E-value=3.3e-05 Score=59.74 Aligned_cols=63 Identities=19% Similarity=0.089 Sum_probs=41.1
Q ss_pred ceeEeecCCccccc--------HhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHH------HcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADY--------IKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAK------QIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~--------~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~------~~~~~~~i~~inK~ 211 (211)
..+.++||||+++| ......++..+|++++|+|+.....-+ ...+++.+. ..++| ++++.||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~ 126 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKR 126 (198)
T ss_pred EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECc
Confidence 56779999997654 122445678999999999997643221 122223222 23567 88999995
No 274
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.95 E-value=4.1e-05 Score=57.72 Aligned_cols=63 Identities=17% Similarity=0.095 Sum_probs=44.7
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+.+.||||++.|......-+..+|++++|.|+.+...-+ -+.++..+.. .+.| +++|.||+
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~ 130 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKA 130 (180)
T ss_pred EEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCc
Confidence 56789999999998877777889999999999987533211 1223333333 2445 88899995
No 275
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.94 E-value=1.6e-05 Score=58.67 Aligned_cols=64 Identities=22% Similarity=0.170 Sum_probs=45.9
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
...+.++||||+.++.......++.+|++++++|....-. ......+..... .++| +++++||+
T Consensus 47 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~ 115 (164)
T cd04139 47 DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP-LLLVGNKC 115 (164)
T ss_pred EEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEcc
Confidence 3468889999999999999899999999999999764321 111222222222 4677 88999996
No 276
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.94 E-value=1.2e-05 Score=60.82 Aligned_cols=64 Identities=22% Similarity=0.151 Sum_probs=44.8
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHH----HcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAK----QIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~----~~~~~~~i~~inK~ 211 (211)
...+.++||||+.+|.......+..+|+++++.|......-+ .+..+..+. ..+.| +|+++||+
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~ 116 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKS 116 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEch
Confidence 356789999999998777777888999999999987653222 122222222 23567 77999995
No 277
>PLN03118 Rab family protein; Provisional
Probab=97.93 E-value=3.9e-05 Score=59.74 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=44.6
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchH-HHH-HHHHH----cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTR-EHL-LLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~-~~~-~~~~~----~~~~~~i~~inK~ 211 (211)
..++.+.||||+++|.......+..+|++++|+|+.....-+.. ..+ ..+.. .+.| ++++.||+
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~ 130 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKV 130 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 35788999999999987777888899999999998764322221 122 22221 3456 77889995
No 278
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.92 E-value=2.8e-05 Score=57.95 Aligned_cols=64 Identities=11% Similarity=0.122 Sum_probs=44.1
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc--hHHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ--TREHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~--~~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
...+.+.||||+.++.......+..+|++++++|+.....-+ ...++..+... +.| ++++.||+
T Consensus 47 ~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~ 114 (171)
T cd00157 47 QVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVP-IILVGTKI 114 (171)
T ss_pred EEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEccH
Confidence 346889999999987666556678899999999987643211 12233333332 366 88999995
No 279
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.92 E-value=2e-05 Score=58.70 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=42.9
Q ss_pred ceeEeecCCcccc-cHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH-----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHAD-YIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ-----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~-~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~-----~~~~~~i~~inK~ 211 (211)
..+.+.||||+.. +.......+..+|++++++|+.....-+ .+.++..+.. .+.| +|++.||+
T Consensus 47 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 116 (165)
T cd04146 47 VSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKA 116 (165)
T ss_pred EEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECC
Confidence 4578999999985 3444566778899999999997653322 2223333332 2577 88999996
No 280
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.90 E-value=7.1e-05 Score=57.46 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=45.6
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
..+.+.||||++.|......-...+|++++|.|...... ...+.++..+.. .++| +|++.||+
T Consensus 55 ~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~p-iilVGNK~ 120 (189)
T cd04121 55 VKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVP-KILVGNRL 120 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECc
Confidence 567889999999888666566689999999999876543 222334444443 3566 88999995
No 281
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.89 E-value=4.2e-05 Score=57.81 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=44.7
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hH-HHHHHHHH--cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TR-EHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~-~~~~~~~~--~~~~~~i~~inK~ 211 (211)
.++.+.||||+++|.......+..+|++++|.|......-+ .. .++..+.. .++| +|++.||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~p-iilvgnK~ 115 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP-FLLVGTQI 115 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECH
Confidence 56789999999998766666788999999999987654322 22 23333332 2566 88999995
No 282
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.88 E-value=4.8e-05 Score=60.50 Aligned_cols=63 Identities=14% Similarity=0.022 Sum_probs=48.8
Q ss_pred ceeEeecCCcccc-------------cHhHHhhhcc-ccceEEEEEeccCCCCcch-HHHHHHHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHAD-------------YIKNMITGTS-QMDGAILVVAATDGAMPQT-REHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~-------------~~~~~~~~~~-~~d~~~~vvd~~~~~~~~~-~~~~~~~~~~~~~~~i~~inK~ 211 (211)
-.++++||||... +.+.+...++ ..+.+++|+||..++..++ .++++.+...+.+ .|+|+||+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~r-ti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGER-TIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCc-EEEEEECC
Confidence 4699999999752 1133555666 4569999999999988877 5788888888887 77899996
No 283
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.88 E-value=4e-05 Score=56.61 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=43.4
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+.+.||||+++|......-+..+|++++|+|...... .....+++.+.. .+.| ++++.||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 116 (163)
T cd04136 49 CMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVP-MVLVGNKC 116 (163)
T ss_pred EEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 456789999999887666666788999999999865432 222233333332 2566 88899995
No 284
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.87 E-value=4e-05 Score=57.43 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=44.0
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
..+.+.||||+.+|.......+..+|+++++.|......-+. ..++..... .+.| +|++.||+
T Consensus 46 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~ 112 (174)
T smart00174 46 VELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP-IILVGTKL 112 (174)
T ss_pred EEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEecCh
Confidence 457899999999887766667889999999999865422111 123333332 2567 88999995
No 285
>PLN03110 Rab GTPase; Provisional
Probab=97.87 E-value=8.6e-05 Score=58.16 Aligned_cols=63 Identities=19% Similarity=0.091 Sum_probs=45.9
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
..+.+.||||++.|.......+..+|++++|.|..+...-+ ...++..+.. .++| ++++.||+
T Consensus 61 ~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~ 127 (216)
T PLN03110 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKS 127 (216)
T ss_pred EEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEECh
Confidence 46778999999998877777788999999999987543322 2334444443 3566 78899995
No 286
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.86 E-value=4.5e-05 Score=56.54 Aligned_cols=63 Identities=14% Similarity=0.063 Sum_probs=43.9
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+.+.||||++.|......-+..+|++++|.|..+... ..-..++..+.. .++| ++++.||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~ 116 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVP-IILVGNKV 116 (163)
T ss_pred EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 346789999999887666666789999999999866432 122333333333 3577 88899995
No 287
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.86 E-value=8.9e-05 Score=56.66 Aligned_cols=63 Identities=14% Similarity=0.021 Sum_probs=43.7
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
..+.+.||||...+.......+..+|++++|+|..+...-+ .+.+++.+... +.| +++|.||+
T Consensus 50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~ 115 (193)
T cd04118 50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKS 115 (193)
T ss_pred EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcc
Confidence 34668999999887665556677899999999986543221 23344444433 567 88999995
No 288
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.85 E-value=2.9e-05 Score=57.66 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=44.0
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+.+.||||++.|.......+..+|++++|.|...... .....++..+.. .+.| ++++.||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 116 (164)
T cd04175 49 CMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKC 116 (164)
T ss_pred EEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECC
Confidence 446689999999988777777889999999999764432 112223333322 3567 88999995
No 289
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.85 E-value=8e-05 Score=56.59 Aligned_cols=63 Identities=13% Similarity=0.091 Sum_probs=44.0
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchH--HHHHHHHH--cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTR--EHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~--~~~~~~~~--~~~~~~i~~inK~ 211 (211)
..+.+.||||+++|.......+..+|++++|.|......-+.. .++..... .++| +|++.||.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 115 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTP-IMLVGLKT 115 (187)
T ss_pred EEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCh
Confidence 4578899999998877666778899999999998764432221 12222221 3567 88999995
No 290
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.84 E-value=3.2e-05 Score=57.31 Aligned_cols=63 Identities=19% Similarity=0.106 Sum_probs=44.2
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+.+.||||+++|.......+..+|++++|.|+.....- ....+.+.+.+ .+.| ++++.||+
T Consensus 48 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~ 115 (164)
T smart00173 48 CLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP-IVLVGNKC 115 (164)
T ss_pred EEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 4677899999999987777778899999999998754321 11222222222 3567 88899995
No 291
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.83 E-value=5.5e-05 Score=55.53 Aligned_cols=64 Identities=22% Similarity=0.143 Sum_probs=45.4
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
...+.++|+||+.++.......+..+|++++|+|...... .....++..... .+.| +++++||+
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~ 114 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKC 114 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECC
Confidence 3568899999999988888888899999999999865432 112223333322 2566 88999996
No 292
>KOG1191|consensus
Probab=97.83 E-value=4.1e-05 Score=65.56 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=70.8
Q ss_pred chhhhhhhhcccccccc-cchhhcccceEEeEeEEEeeeCCceeEeecCCcccc---------cHhHHhhhccccceEEE
Q psy9646 108 VLADKKLAKVKQYADID-NAPEEKARGITINVAHVEYATENRHYSHTDCPGHAD---------YIKNMITGTSQMDGAIL 177 (211)
Q Consensus 108 ~~~~~~~~~f~~~i~~~-~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~---------~~~~~~~~~~~~d~~~~ 177 (211)
+.|..+++++...+.-+ ..=.....|.|.+.--..++..+..+.++||.|..+ -+..+..++..||++++
T Consensus 275 GrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~ 354 (531)
T KOG1191|consen 275 GRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILL 354 (531)
T ss_pred cCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEE
Confidence 33445566655444321 122233557788877778889999999999999876 24667888999999999
Q ss_pred EEeccCCCCcchHHHHHHHHHcCCC
Q psy9646 178 VVAATDGAMPQTREHLLLAKQIGVT 202 (211)
Q Consensus 178 vvd~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
|+|+.++.+.++..+.+.+...+.-
T Consensus 355 vvda~~~~t~sd~~i~~~l~~~~~g 379 (531)
T KOG1191|consen 355 VVDAEESDTESDLKIARILETEGVG 379 (531)
T ss_pred EecccccccccchHHHHHHHHhccc
Confidence 9999999999998888888876654
No 293
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.83 E-value=3.9e-05 Score=56.44 Aligned_cols=63 Identities=17% Similarity=0.058 Sum_probs=43.1
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHH----HcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAK----QIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~----~~~~~~~i~~inK~ 211 (211)
..+.+.||||+++|......-+..+|++++|+|..+...-+. ..++.... ..+.| ++++.||+
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~ 116 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP-MVLVGNKC 116 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 456789999999987777777788999999999865332111 12222222 23567 88999995
No 294
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.80 E-value=0.00012 Score=57.13 Aligned_cols=64 Identities=14% Similarity=0.039 Sum_probs=43.5
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc-----CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI-----GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~-----~~~~~i~~inK~ 211 (211)
..+.+.||||++.|......-+..+|++++|+|...... .....+...+... ..+++++|.||+
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~ 119 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKT 119 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECc
Confidence 567899999998876666666789999999999865432 2222333444332 123478899995
No 295
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.80 E-value=4.9e-05 Score=58.16 Aligned_cols=63 Identities=19% Similarity=0.149 Sum_probs=45.3
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH------cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ------IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~------~~~~~~i~~inK~ 211 (211)
..+.+.||||+++|.......+..+|++++|.|......-. -..++..+.. .+.| +|++.||+
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~ 116 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP-IMIVGNKC 116 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC-EEEEEECh
Confidence 45788999999998877777888999999999986543212 2334343432 2466 88899995
No 296
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.79 E-value=5.7e-05 Score=55.07 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=42.0
Q ss_pred HhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 162 IKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 162 ~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
.++++.++..+|++++|+|+.++...++..+.+.+... +.| +++++||+
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~-~iivlNK~ 52 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKK-NILLLNKA 52 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCc-EEEEEech
Confidence 35788999999999999999998888888888888776 777 77899996
No 297
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.76 E-value=6.4e-05 Score=56.25 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=47.5
Q ss_pred EeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHH----HHHcCCCeEEEEEeCC
Q psy9646 142 EYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLL----AKQIGVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~----~~~~~~~~~i~~inK~ 211 (211)
.++..+..+.++||||+..+.......+..+|++++|+|+.+... ......+.. ....++| +++++||+
T Consensus 52 ~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~ 125 (173)
T cd04155 52 TVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP-VLVFANKQ 125 (173)
T ss_pred EEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECC
Confidence 344567789999999998887777777889999999999865321 111222211 2234677 77899995
No 298
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.76 E-value=9.4e-05 Score=55.86 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=45.1
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
..++.+.||||+++|.......+..+|++++|.|......-+. ..++..+.. .++| +|++.||+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilvgnK~ 115 (174)
T cd01871 48 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKL 115 (174)
T ss_pred EEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeCh
Confidence 3567899999999887766677889999999999976432222 123333332 2466 88999995
No 299
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.75 E-value=0.00011 Score=56.03 Aligned_cols=63 Identities=17% Similarity=0.089 Sum_probs=44.2
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
..+.+.||||+.+|......-+..+|++++|+|...... ..-..++..+... ..| ++++.||+
T Consensus 49 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~ 115 (188)
T cd04125 49 IKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVI-KVIVANKS 115 (188)
T ss_pred EEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECC
Confidence 456789999999888777788899999999999875432 1112233333332 345 78899995
No 300
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.75 E-value=0.00012 Score=57.56 Aligned_cols=67 Identities=13% Similarity=0.024 Sum_probs=46.3
Q ss_pred eeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 144 ATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 144 ~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
......+.+.||||++.|......-+..+|++++|.|..+...-.. ...+..+.. .++| +|+|.||+
T Consensus 40 ~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~ 110 (220)
T cd04126 40 QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKL 110 (220)
T ss_pred EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECc
Confidence 3455678999999999887666666789999999999876533222 222332322 2456 88999995
No 301
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.74 E-value=0.00014 Score=57.13 Aligned_cols=64 Identities=14% Similarity=-0.010 Sum_probs=44.4
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
...+.+.||||++.|......-...+|++|+|.|......-+. ..++..+.. .++| +++|.||+
T Consensus 61 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~p-iilvgNK~ 127 (219)
T PLN03071 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKV 127 (219)
T ss_pred EEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEch
Confidence 3578899999999886555555789999999999876543222 223333322 3567 88999995
No 302
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.73 E-value=5.8e-05 Score=56.37 Aligned_cols=63 Identities=19% Similarity=0.062 Sum_probs=43.8
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHH----HcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAK----QIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~----~~~~~~~i~~inK~ 211 (211)
..+.++||||+.+|.......+..+|++++|+|......-+ ...+..... ..+.| ++++.||+
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~ 116 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVP-MVLVGNKA 116 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC-EEEEEECh
Confidence 45678999999999877777788899999999986543211 122222222 24677 77899995
No 303
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.73 E-value=0.00014 Score=54.53 Aligned_cols=63 Identities=13% Similarity=-0.108 Sum_probs=42.4
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH-cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ-IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~-~~~~~~i~~inK~ 211 (211)
..+.+.|++|...+.......+..+|++++|+|+.+...- ...++++.+.. .++| +++++||+
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p-~iiv~NK~ 118 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIP-CLFVAAKA 118 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCe-EEEEEEcc
Confidence 4577889999988866555567899999999998654211 11133333322 2566 88999995
No 304
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.73 E-value=8.1e-05 Score=58.08 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=43.2
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
..+.+.||||++.|......-+..+|++++|.|..+... ..-..++...... ..++++++.||+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~ 119 (211)
T cd04111 52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKC 119 (211)
T ss_pred EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcc
Confidence 468899999999887777777889999999999875432 1112233333221 223377889995
No 305
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.72 E-value=0.00012 Score=54.93 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=45.1
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc--hHHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ--TREHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~--~~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
.++.+.||||+.+|.......++.+|++++|.|..+...-+ ...++..+.. .+.| ++++.||+
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilv~nK~ 114 (173)
T cd04130 48 VRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAP-IILVGTQA 114 (173)
T ss_pred EEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeCh
Confidence 46788999999988776666788999999999987554222 2234444433 3566 88999995
No 306
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.71 E-value=0.0001 Score=55.19 Aligned_cols=63 Identities=16% Similarity=0.078 Sum_probs=43.6
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchH--HHHHHHH--HcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTR--EHLLLAK--QIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~--~~~~~~~--~~~~~~~i~~inK~ 211 (211)
..+.++||||+.+|.......+..+|+++++.|..+.-.-+.. .+...+. ..+.| ++++.||+
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~p-iivv~nK~ 114 (174)
T cd04135 48 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-YLLVGTQI 114 (174)
T ss_pred EEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeEch
Confidence 4577899999998876666677899999999998655332211 2233332 24677 78899995
No 307
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.70 E-value=0.00012 Score=58.59 Aligned_cols=63 Identities=14% Similarity=0.053 Sum_probs=42.9
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH------------cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ------------IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~------------~~~~~~i~~inK~ 211 (211)
.++.+.||+|+++|.......+..+|++++|.|...... .....+++.+.. .++| +|++.||+
T Consensus 48 ~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~ 123 (247)
T cd04143 48 YQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKA 123 (247)
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECc
Confidence 567899999999886555556788999999999875432 111223333322 2466 88999996
No 308
>KOG0466|consensus
Probab=97.69 E-value=1.3e-05 Score=64.84 Aligned_cols=89 Identities=26% Similarity=0.333 Sum_probs=72.3
Q ss_pred HHHHHhhhCCCCCCCCCCCeeEEEeeEEeecC--------CcEEEEEEEEEEEEecCCEEEEeecCc------ee-----
Q psy9646 3 LLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPG--------RGTVVTGRLERGIVKKGMECEFTGYGR------QF----- 63 (211)
Q Consensus 3 ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~--------~G~v~~G~v~~G~i~~g~~v~i~p~~~------~~----- 63 (211)
+.|+|.+.+|.|.|+...|.||-|-+.|.++. .|-+..|.+..|.+++|+.+.+.|.-- ..
T Consensus 232 v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi 311 (466)
T KOG0466|consen 232 VCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPI 311 (466)
T ss_pred HHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeH
Confidence 57889999999999999999999999999875 455889999999999999999998631 01
Q ss_pred eEEEEEEEecceecceecccCceehhcc
Q psy9646 64 KTTVTGIEMFHKILDEAQAGDQLGALVK 91 (211)
Q Consensus 64 ~~~v~~i~~~~~~~~~a~~G~~v~~~l~ 91 (211)
-.+|.|+...+.+++.|.+|..+++-.+
T Consensus 312 ~SrI~sL~AE~n~L~~AvPGGLIGVGT~ 339 (466)
T KOG0466|consen 312 FSRIVSLFAEQNDLQFAVPGGLIGVGTK 339 (466)
T ss_pred HHHHHHHHhhhccceeecCCceeeeccc
Confidence 1245555566678899999999998554
No 309
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.62 E-value=0.00014 Score=54.55 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=42.6
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cch-HHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQT-REHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~-~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
..++.+.||||++++.......+..+|+++++.|...... ..- ..+...+.. .+.| ++++.||+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 115 (175)
T cd01870 48 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKK 115 (175)
T ss_pred EEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeCh
Confidence 3467899999999887665567789999999988764321 111 112222222 3667 88999995
No 310
>PLN03108 Rab family protein; Provisional
Probab=97.59 E-value=0.00036 Score=54.33 Aligned_cols=63 Identities=22% Similarity=0.143 Sum_probs=43.7
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
..+.+.||||++.|......-+..+|++++|.|......-+ ...++..+.. .+.| ++++.||+
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~ 121 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKC 121 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECc
Confidence 35778999999988777777778999999999986543222 1223332322 2466 88999995
No 311
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.57 E-value=0.00025 Score=55.75 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=41.8
Q ss_pred CCceeEeecCCcccccHhHHhhhcc-ccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTS-QMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~-~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
....+.++||||++.+... ..+. .+|++++|+|+.+... .....++..+.. .++| +|+|.||+
T Consensus 48 ~~~~l~i~Dt~G~~~~~~~--~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~ 116 (221)
T cd04148 48 EESTLVVIDHWEQEMWTED--SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP-IILVGNKS 116 (221)
T ss_pred EEEEEEEEeCCCcchHHHh--HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECh
Confidence 4467889999999844333 2344 8999999999876532 112334444433 3567 88999995
No 312
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.56 E-value=4.1e-05 Score=53.75 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=45.1
Q ss_pred EEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH-----cCCCeEEEEEeCC
Q psy9646 140 HVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ-----IGVTNIVVFINKF 211 (211)
Q Consensus 140 ~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~-----~~~~~~i~~inK~ 211 (211)
..........+.|.|++|...+.......+..+|++++|.|..+... ....++++.+.. ..+| +|++.||.
T Consensus 42 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~ 118 (119)
T PF08477_consen 42 VIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIP-IILVGNKS 118 (119)
T ss_dssp EEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSE-EEEEEE-T
T ss_pred EEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCC-EEEEEecc
Confidence 33333344458899999998877654445899999999999876542 222223222322 2477 88999995
No 313
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.54 E-value=0.00049 Score=52.39 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=43.1
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
..+.+.||+|++.|.......+..+|++++|+|..+...-+. .+++..+... ..++ |++.||+
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~ 114 (182)
T cd04128 49 ITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKY 114 (182)
T ss_pred EEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEch
Confidence 457889999999987766677889999999999866533222 2344444332 2232 4789995
No 314
>PRK13768 GTPase; Provisional
Probab=97.52 E-value=0.00018 Score=57.81 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=43.6
Q ss_pred ceeEeecCCccccc------HhHHhhhccc--cceEEEEEeccCCCCcchHHHHHHHH-----HcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADY------IKNMITGTSQ--MDGAILVVAATDGAMPQTREHLLLAK-----QIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~------~~~~~~~~~~--~d~~~~vvd~~~~~~~~~~~~~~~~~-----~~~~~~~i~~inK~ 211 (211)
..++++||||+.++ .......+.. ++++++|+|+..+..+.+.....++. ..+.| +++++||+
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~-~i~v~nK~ 172 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLP-QIPVLNKA 172 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCC-EEEEEEhH
Confidence 36899999997653 2223333333 89999999998877766655444332 56888 67899995
No 315
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.50 E-value=0.00036 Score=52.93 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=46.7
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
..++.+.||+|++.|.......+..+|++++|.|......-+. +.++..++. .++| +|+|.||+
T Consensus 48 ~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgnK~ 115 (176)
T cd04133 48 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVP-IVLVGTKL 115 (176)
T ss_pred EEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCh
Confidence 3567899999999998777778899999999999875543222 234444443 3566 88999995
No 316
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.48 E-value=0.00078 Score=49.98 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=43.4
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
.++.+.||||...|..........+|++++|.|....-. .....++...... +.| ++++.||.
T Consensus 49 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~-iilvgnK~ 115 (161)
T cd04117 49 VRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQ-KILIGNKA 115 (161)
T ss_pred EEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECc
Confidence 457789999999887777777889999999999765422 1122233333232 355 78899995
No 317
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.47 E-value=0.00028 Score=53.90 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=43.0
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
..+.+.||||++.|..........+|++++|.|......-+. ..++..+.. .+.| +|+|.||+
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~p-iilvgNK~ 114 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVK-LVLVALKC 114 (189)
T ss_pred EEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECh
Confidence 467899999998876555556788999999998765532222 123344433 2566 88999995
No 318
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.47 E-value=0.00021 Score=52.13 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=41.3
Q ss_pred EeecCCc----ccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 151 SHTDCPG----HADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 151 ~~iDtPG----~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+||||| +..|.+..+....+||.++++.||.+....-... ++.....| +|=||||+
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~---fa~~f~~p-vIGVITK~ 99 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPG---FASMFNKP-VIGVITKI 99 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCch---hhcccCCC-EEEEEECc
Confidence 4699999 5567888888889999999999998765433222 23344556 66788885
No 319
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.45 E-value=0.00058 Score=51.80 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=44.4
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
..+.+.||||++.|..........+|++++|.|......-+. ..+...++.. ..| +|+|.||+
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~-iilVgnK~ 115 (178)
T cd04131 49 IELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTK-VLLVGCKT 115 (178)
T ss_pred EEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCC-EEEEEECh
Confidence 457789999999887666667789999999999865543222 2343444332 456 88999995
No 320
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.42 E-value=0.00043 Score=52.38 Aligned_cols=63 Identities=24% Similarity=0.329 Sum_probs=48.9
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..+.++++|||+.. ...+..++..+|.+++++.....-.....+.++.+++.+.+ +.+++||+
T Consensus 91 ~~~d~viiDtpp~~--~~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~-~~vV~N~~ 153 (179)
T cd03110 91 EGAELIIIDGPPGI--GCPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIP-VGVVINKY 153 (179)
T ss_pred cCCCEEEEECcCCC--cHHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCC-EEEEEeCC
Confidence 56789999999653 23566778899999999998655445567788888888888 66889985
No 321
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.00099 Score=57.88 Aligned_cols=91 Identities=16% Similarity=0.344 Sum_probs=74.0
Q ss_pred CCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCc-eeeEEEEEEEecceecceecccCceehhccC
Q psy9646 14 PVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGR-QFKTTVTGIEMFHKILDEAQAGDQLGALVKG 92 (211)
Q Consensus 14 p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~-~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~ 92 (211)
|.....---..-+..+|..++.|.++...|..|.++.|..+.+.-++. -...+|.|++.+++++.++.+|..|++.+++
T Consensus 406 p~~~e~~~g~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~ 485 (509)
T COG0532 406 PEKKERVIGLAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN 485 (509)
T ss_pred hhhhhhcccceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC
Confidence 433333333456778888899999999999999999999998874443 2258999999999999999999999999996
Q ss_pred CCcccccccccccc
Q psy9646 93 MKRDEVNRGLIMAK 106 (211)
Q Consensus 93 ~~~~~v~~G~ii~~ 106 (211)
-.+++.||++-.
T Consensus 486 --~~di~~gD~le~ 497 (509)
T COG0532 486 --YRDIKEGDILEV 497 (509)
T ss_pred --cccCCCCCEEEE
Confidence 678999988753
No 322
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.35 E-value=0.00083 Score=51.46 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=43.1
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-H-HHHHHHHH--cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-R-EHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~-~~~~~~~~--~~~~~~i~~inK~ 211 (211)
..+.+.||||++.|......-...+|++++|.|......-+. + .+...+.. .++| ++++.||.
T Consensus 51 ~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~ 117 (191)
T cd01875 51 VSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVP-ILLVGTKK 117 (191)
T ss_pred EEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEeCh
Confidence 457789999999987665566789999999999865432111 1 12222222 3567 88999994
No 323
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.33 E-value=0.0019 Score=43.78 Aligned_cols=74 Identities=23% Similarity=0.154 Sum_probs=57.5
Q ss_pred EEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc-eecceecccCceehhccCCCcccc-cccc
Q psy9646 25 PVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH-KILDEAQAGDQLGALVKGMKRDEV-NRGL 102 (211)
Q Consensus 25 ~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~-~~~~~a~~G~~v~~~l~~~~~~~v-~~G~ 102 (211)
.|-+....++.|.+.+.-|.+|++++||.+..... ..+|+++...+ +++.+|.||+.|.+. ++ .++ ..|+
T Consensus 4 ~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~----~gkVr~l~d~~g~~v~~a~Ps~~V~I~--G~--~~~P~aGd 75 (95)
T cd03702 4 VVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTT----YGKVRAMFDENGKRVKEAGPSTPVEIL--GL--KGVPQAGD 75 (95)
T ss_pred EEEEEEecCCCCccEEEEEEcCeEeCCCEEEEccc----ccEEEEEECCCCCCCCEECCCCcEEEc--CC--CCCCCCCC
Confidence 45566667889999999999999999999887654 56899998777 799999999999872 22 233 5566
Q ss_pred cccc
Q psy9646 103 IMAK 106 (211)
Q Consensus 103 ii~~ 106 (211)
.+..
T Consensus 76 ~~~~ 79 (95)
T cd03702 76 KFLV 79 (95)
T ss_pred EEEE
Confidence 6554
No 324
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.31 E-value=0.00076 Score=53.14 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=44.2
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HH-HHHHHHH--cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-RE-HLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~-~~~~~~~--~~~~~~i~~inK~ 211 (211)
..+.+.||+|++.|..........+|++++|.|..+...-+. .. +...... .++| +|+|.||+
T Consensus 49 v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~p-iiLVgnK~ 115 (222)
T cd04173 49 IELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAK-VVLVGCKL 115 (222)
T ss_pred EEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEECc
Confidence 457789999999888777778899999999999876532111 11 2222222 3567 88999995
No 325
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.30 E-value=0.001 Score=50.67 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=44.4
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
..+.+.||+|.+.|.......+..+|++++|.|......-+. ..++..++.. +.| +|+|.||+
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~ 119 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKS 119 (182)
T ss_pred EEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEeECh
Confidence 457789999999887766677889999999999865533222 2233333332 456 88999995
No 326
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.30 E-value=0.00033 Score=57.32 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=43.2
Q ss_pred CCcccc-cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 155 CPGHAD-YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 155 tPG~~~-~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
-|||.. -.+++...+..+|++++|+|+..+.......+.+... +.| +++++||+
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp-~iiVlNK~ 61 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKP-RLLILNKS 61 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCC-EEEEEEch
Confidence 589863 5688999999999999999998887777766655543 566 77999995
No 327
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.30 E-value=0.0012 Score=52.40 Aligned_cols=63 Identities=14% Similarity=0.033 Sum_probs=44.9
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
..+.+.||+|.+.|.......+..+|++++|.|......-+. ..++..+.. .+.| +|+|.||+
T Consensus 61 v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~ 127 (232)
T cd04174 61 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTR-ILLIGCKT 127 (232)
T ss_pred EEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCC-EEEEEECc
Confidence 457789999999887766677899999999999875543221 223344433 2456 88999995
No 328
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.29 E-value=0.0016 Score=50.59 Aligned_cols=38 Identities=21% Similarity=0.113 Sum_probs=31.8
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA 185 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~ 185 (211)
..+.+.||+|++.|......-+..+|++++|.|....-
T Consensus 54 ~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~ 91 (202)
T cd04102 54 FFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRK 91 (202)
T ss_pred EEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChH
Confidence 45789999999998776666788999999999987654
No 329
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.28 E-value=0.0018 Score=60.55 Aligned_cols=87 Identities=23% Similarity=0.397 Sum_probs=61.9
Q ss_pred hHHHHHhhhCCCCCC-------------------------CCCCCeeEEEeeEEeecCCcE-EEEEEEEEEEEecCCEEE
Q psy9646 2 ELLNQIDTYIPQPVR-------------------------DLDKPFYLPVEHTYSIPGRGT-VVTGRLERGIVKKGMECE 55 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~-------------------------~~~~p~~~~v~~~~~~~~~G~-v~~G~v~~G~i~~g~~v~ 55 (211)
.||+++.+++|.|.. +.++|+...|.-++..++.|. +..+||-+|+++.|+.|.
T Consensus 331 ~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~ 410 (843)
T PLN00116 331 ALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVR 410 (843)
T ss_pred HHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEE
Confidence 578888888877731 113578777777776677787 899999999999999997
Q ss_pred EeecCce--ee-----EEEEEEEecc----eecceecccCceeh
Q psy9646 56 FTGYGRQ--FK-----TTVTGIEMFH----KILDEAQAGDQLGA 88 (211)
Q Consensus 56 i~p~~~~--~~-----~~v~~i~~~~----~~~~~a~~G~~v~~ 88 (211)
+...+.. .+ .+|..|.... .+++++.|||++++
T Consensus 411 v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai 454 (843)
T PLN00116 411 IMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAM 454 (843)
T ss_pred EeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEE
Confidence 6433210 01 2454444332 68999999999987
No 330
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.28 E-value=0.00074 Score=52.05 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=44.1
Q ss_pred ceeEeecCCcccc-------cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..+.++||||..+ |++. .++..+|+.+++.+ ......+..+++.++..+.| +++|+||+
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~--~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~-~ilV~nK~ 117 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEE--MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKK-FYFVRTKV 117 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHH--hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCC-EEEEEecc
Confidence 4689999999753 3322 24567898888754 45677777888888888877 88999996
No 331
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.0015 Score=58.35 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=70.7
Q ss_pred chhhhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccH----hH--Hhhh--ccccceEEEEE
Q psy9646 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYI----KN--MITG--TSQMDGAILVV 179 (211)
Q Consensus 108 ~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~----~~--~~~~--~~~~d~~~~vv 179 (211)
+.|..+|+.+-..+--.+...--=.|.|++..-+.+...++++.++|.||...+. ++ +..- =...|+++-|+
T Consensus 10 GNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVv 89 (653)
T COG0370 10 GNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVV 89 (653)
T ss_pred cCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEc
Confidence 4456677766555544555555567899999999999999999999999965442 11 1111 24679999999
Q ss_pred eccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 180 AATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 180 d~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
||..= +..-.+.-++.+.|+| +|+++|++
T Consensus 90 DAtnL--eRnLyltlQLlE~g~p-~ilaLNm~ 118 (653)
T COG0370 90 DATNL--ERNLYLTLQLLELGIP-MILALNMI 118 (653)
T ss_pred ccchH--HHHHHHHHHHHHcCCC-eEEEeccH
Confidence 98432 2223345567789999 88999975
No 332
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.18 E-value=0.004 Score=49.94 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=47.6
Q ss_pred eEEeEeEEEeeeCCceeEeecCCcccccH------hHHhh----hc--cccceEEEEEeccC-CCCcchHHHHHHHHH-c
Q psy9646 134 ITINVAHVEYATENRHYSHTDCPGHADYI------KNMIT----GT--SQMDGAILVVAATD-GAMPQTREHLLLAKQ-I 199 (211)
Q Consensus 134 ~tv~~~~~~~~~~~~~~~~iDtPG~~~~~------~~~~~----~~--~~~d~~~~vvd~~~-~~~~~~~~~~~~~~~-~ 199 (211)
.|........+..+..+.++||||..+.. +.+.. -+ ...|+++++..... .....+..+++.+.. .
T Consensus 65 ~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~f 144 (249)
T cd01853 65 ETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSF 144 (249)
T ss_pred ceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 45555555566778899999999977651 12222 22 25688888865432 344555566666654 4
Q ss_pred CC---CeEEEEEeCC
Q psy9646 200 GV---TNIVVFINKF 211 (211)
Q Consensus 200 ~~---~~~i~~inK~ 211 (211)
|. .++|+|+||+
T Consensus 145 G~~i~~~~ivV~T~~ 159 (249)
T cd01853 145 GPSIWRNAIVVLTHA 159 (249)
T ss_pred ChhhHhCEEEEEeCC
Confidence 42 2477889885
No 333
>PLN00023 GTP-binding protein; Provisional
Probab=97.12 E-value=0.0029 Score=52.49 Aligned_cols=63 Identities=21% Similarity=0.136 Sum_probs=44.3
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc---------------CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI---------------GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~---------------~~~~~i~~inK~ 211 (211)
..+.+.||+|++.|......-+..+|++|+|.|....-. ..-..+++.+... .+| +|+|.||+
T Consensus 83 v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ip-IILVGNK~ 161 (334)
T PLN00023 83 FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVP-YIVIGNKA 161 (334)
T ss_pred EEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCc-EEEEEECc
Confidence 458899999999987666666889999999999865332 1222344444432 255 88999995
No 334
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.10 E-value=0.0024 Score=48.26 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=48.5
Q ss_pred eEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-CcchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 139 AHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 139 ~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-~~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
....+...+..+.+.|.+|+..+...-..-+..+|+++||+|+.+.- ..+.++.+..+.. .++| +++++||.
T Consensus 49 ~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~ 125 (175)
T PF00025_consen 49 NIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIP-ILILANKQ 125 (175)
T ss_dssp EEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSE-EEEEEEST
T ss_pred ccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccce-EEEEeccc
Confidence 34456668889999999998776544444557899999999997542 2333333333322 3566 77899994
No 335
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.09 E-value=0.0016 Score=51.63 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=46.4
Q ss_pred EEeEeEEEeeeCCceeEeecCCcccc-------cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 135 TINVAHVEYATENRHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 135 tv~~~~~~~~~~~~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
|.......+..++.++.++||||+.+ +..++...+..+|++++|+|+.... .+-..+.+.+...|+
T Consensus 34 T~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~-~~~~~~~~~l~~~gi 106 (233)
T cd01896 34 TLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPE-GHREILERELEGVGI 106 (233)
T ss_pred cccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcch-hHHHHHHHHHHHcCc
Confidence 44444455666788999999999753 3456677889999999999986543 244456666766654
No 336
>PTZ00416 elongation factor 2; Provisional
Probab=97.02 E-value=0.0052 Score=57.54 Aligned_cols=87 Identities=18% Similarity=0.371 Sum_probs=61.6
Q ss_pred hHHHHHhhhCCCCCC-------------------------CCCCCeeEEEeeEEeecCCcE-EEEEEEEEEEEecCCEEE
Q psy9646 2 ELLNQIDTYIPQPVR-------------------------DLDKPFYLPVEHTYSIPGRGT-VVTGRLERGIVKKGMECE 55 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~-------------------------~~~~p~~~~v~~~~~~~~~G~-v~~G~v~~G~i~~g~~v~ 55 (211)
.||+++..++|.|.. +.++|+...|.-+...++.|. +...||-+|+++.|++|.
T Consensus 327 ~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~ 406 (836)
T PTZ00416 327 TLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVR 406 (836)
T ss_pred HHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEE
Confidence 588999998887731 113467666776666678888 799999999999999997
Q ss_pred EeecCce---ee----EEEEEEEecc----eecceecccCceeh
Q psy9646 56 FTGYGRQ---FK----TTVTGIEMFH----KILDEAQAGDQLGA 88 (211)
Q Consensus 56 i~p~~~~---~~----~~v~~i~~~~----~~~~~a~~G~~v~~ 88 (211)
+...+.. .. .+|..+.... .++++|.||+++++
T Consensus 407 v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i 450 (836)
T PTZ00416 407 IQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGL 450 (836)
T ss_pred EeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEE
Confidence 6433210 01 1355554333 68999999999987
No 337
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.02 E-value=0.0036 Score=48.65 Aligned_cols=63 Identities=21% Similarity=0.188 Sum_probs=48.4
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccC--CCCcchHHHHHHHHHcC---CCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATD--GAMPQTREHLLLAKQIG---VTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~--~~~~~~~~~~~~~~~~~---~~~~i~~inK~ 211 (211)
..+.+.||+|+.+|..-+..-...+++++++.|... ......+.+...+.... .| ++++.||+
T Consensus 54 ~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~-iilv~nK~ 121 (219)
T COG1100 54 IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVP-ILLVGNKI 121 (219)
T ss_pred EEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCce-EEEEeccc
Confidence 457789999999998888788899999999999874 33444555665665544 66 88999995
No 338
>KOG0090|consensus
Probab=97.01 E-value=0.0034 Score=48.54 Aligned_cols=75 Identities=15% Similarity=0.225 Sum_probs=48.5
Q ss_pred EEeEeEEEeeeCCceeEeecCCcccccHhHHhhhcc---ccceEEEEEeccCCCCcchHHHH----HHHHH----cCCCe
Q psy9646 135 TINVAHVEYATENRHYSHTDCPGHADYIKNMITGTS---QMDGAILVVAATDGAMPQTREHL----LLAKQ----IGVTN 203 (211)
Q Consensus 135 tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~---~~d~~~~vvd~~~~~~~~~~~~~----~~~~~----~~~~~ 203 (211)
++.-....|-.+.....++|-|||.+.-.....=+. .+-+++||||+..-.. .-+... ..+.. .+.|+
T Consensus 69 Siepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k-~vrdvaefLydil~~~~~~~~~~~ 147 (238)
T KOG0090|consen 69 SIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLK-NVRDVAEFLYDILLDSRVKKNKPP 147 (238)
T ss_pred eeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccch-hhHHHHHHHHHHHHhhccccCCCC
Confidence 344444555566666899999999988766666665 7889999999865442 222222 22211 23444
Q ss_pred EEEEEeC
Q psy9646 204 IVVFINK 210 (211)
Q Consensus 204 ~i~~inK 210 (211)
+.++.||
T Consensus 148 vLIaCNK 154 (238)
T KOG0090|consen 148 VLIACNK 154 (238)
T ss_pred EEEEecc
Confidence 8889998
No 339
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.0026 Score=54.25 Aligned_cols=100 Identities=20% Similarity=0.381 Sum_probs=73.1
Q ss_pred hHHHHHhhhCCCCC-CCCC-----------CCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEE
Q psy9646 2 ELLNQIDTYIPQPV-RDLD-----------KPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTG 69 (211)
Q Consensus 2 ~ll~~l~~~i~~p~-~~~~-----------~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~ 69 (211)
.+|+++....|.|. +..+ ..|-|-|+--...+.+.++.--||.||+...|+++...-.|+ +.+++.
T Consensus 266 ~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK--~~~ls~ 343 (528)
T COG4108 266 HFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGK--DVKLSD 343 (528)
T ss_pred HHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccCCceeeeeecCC--ceEecc
Confidence 57889988777663 2221 136666666666678999999999999999999999887775 555544
Q ss_pred EEec----ceecceecccCceehhccCCCccccccccccccc
Q psy9646 70 IEMF----HKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107 (211)
Q Consensus 70 i~~~----~~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~ 107 (211)
-+.+ ++.+++|.|||++++. +.--++.||+++..
T Consensus 344 ~~~f~A~dRe~ve~A~aGDIIGl~----nhG~~~IGDT~t~G 381 (528)
T COG4108 344 ALTFMAQDRETVEEAYAGDIIGLH----NHGTIQIGDTFTEG 381 (528)
T ss_pred hHhhhhhhhhhhhhccCCCeEecc----CCCceeecceeecC
Confidence 4322 2678999999999983 33457888888754
No 340
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.83 E-value=0.0047 Score=48.11 Aligned_cols=65 Identities=14% Similarity=-0.003 Sum_probs=42.8
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchH-HHHHHHHH--cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTR-EHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~-~~~~~~~~--~~~~~~i~~inK~ 211 (211)
....+.+.||||+.+|-.....-...+|+++++.|..+...-+.. .++..+.. .++| ++++.||+
T Consensus 56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-i~lv~nK~ 123 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIP-IVLVGNKV 123 (215)
T ss_pred eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECc
Confidence 445788899999988765555556788999999998765432221 22222221 3466 77889995
No 341
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.82 E-value=0.002 Score=50.66 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=50.7
Q ss_pred CCceeEeecC-CcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDC-PGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDt-PG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.+.++++|| .|.+-|-+-+ ...+|.++.|+|....-....+++-+++...|++++.+++||+
T Consensus 132 ~~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv 195 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKV 195 (255)
T ss_pred ccCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeec
Confidence 3467899999 6666665433 4678999999998766667788899999999988899999996
No 342
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=96.79 E-value=0.0056 Score=45.01 Aligned_cols=66 Identities=18% Similarity=0.086 Sum_probs=44.8
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHcC--CCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQIG--VTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~~--~~~~i~~inK~ 211 (211)
....+.+.|++|+..|......-+..+|+++++.|....-. ..-+.++..+.... -++++++.||.
T Consensus 46 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~ 114 (162)
T PF00071_consen 46 KPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKS 114 (162)
T ss_dssp EEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence 33468889999999887766677889999999999754422 22233444443332 24488888984
No 343
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.70 E-value=0.003 Score=43.67 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=45.0
Q ss_pred eeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCC---eEEEEEeC
Q psy9646 149 HYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVT---NIVVFINK 210 (211)
Q Consensus 149 ~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~---~~i~~inK 210 (211)
.++++|||+... ......+..+|.+++++++...-.....+.++.+++.+.+ ++.+++|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 689999998654 3345677889999999998655556667777777776654 57788986
No 344
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=96.69 E-value=0.0051 Score=46.78 Aligned_cols=63 Identities=11% Similarity=0.065 Sum_probs=40.5
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
..+.+.||||+..+.......+..+|+++++.|......-+. ..++..+.. ..+| +|++.||+
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~p-iilvgnK~ 115 (187)
T cd04129 49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVP-VILVGLKK 115 (187)
T ss_pred EEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeCh
Confidence 357789999988775444445688999999988754322111 123333332 2466 88999995
No 345
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.65 E-value=0.015 Score=39.49 Aligned_cols=60 Identities=25% Similarity=0.180 Sum_probs=49.4
Q ss_pred EEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc-eecceecccCceeh
Q psy9646 25 PVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH-KILDEAQAGDQLGA 88 (211)
Q Consensus 25 ~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~-~~~~~a~~G~~v~~ 88 (211)
.|-+.-..++.|++.+.-|.+|++++||.+..... ..+|+++...+ +.+.+|.|++.|.+
T Consensus 4 ~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~----~GkVr~~~d~~g~~v~~a~Ps~~v~i 64 (95)
T cd03701 4 TVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGT----YGKIRTMVDENGKALLEAGPSTPVEI 64 (95)
T ss_pred EEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCc----cceEEEEECCCCCCccccCCCCCEEE
Confidence 45566667899999999999999999999887654 57788987665 68999999998843
No 346
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=96.59 E-value=0.028 Score=39.08 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=58.8
Q ss_pred EEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecce-----------ecceecccCceehhccCC
Q psy9646 25 PVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHK-----------ILDEAQAGDQLGALVKGM 93 (211)
Q Consensus 25 ~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~-----------~~~~a~~G~~v~~~l~~~ 93 (211)
.|-++-..++.|++..--+.+|++++||.+.+........++|+++...+. .+.++.|..-+-+...++
T Consensus 4 tVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~gL 83 (110)
T cd03703 4 TVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPDL 83 (110)
T ss_pred EEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCCC
Confidence 455667778999999999999999999999997765556789999987763 677787666555544433
Q ss_pred Cccccccccccc
Q psy9646 94 KRDEVNRGLIMA 105 (211)
Q Consensus 94 ~~~~v~~G~ii~ 105 (211)
+++..|+.+.
T Consensus 84 --~~v~aG~~~~ 93 (110)
T cd03703 84 --EKAIAGSPLL 93 (110)
T ss_pred --ccccCCCEEE
Confidence 3456676654
No 347
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.58 E-value=0.0062 Score=52.05 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=47.6
Q ss_pred ceeEeecCCcccc-------------------------cHhHHh----hhcc-ccceEEEEE-ecc------CCCCcchH
Q psy9646 148 RHYSHTDCPGHAD-------------------------YIKNMI----TGTS-QMDGAILVV-AAT------DGAMPQTR 190 (211)
Q Consensus 148 ~~~~~iDtPG~~~-------------------------~~~~~~----~~~~-~~d~~~~vv-d~~------~~~~~~~~ 190 (211)
..+.++||+|..+ |..++. ..+. .+|.+++|. |+. +.....++
T Consensus 91 ~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe 170 (492)
T TIGR02836 91 FKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEE 170 (492)
T ss_pred ccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHH
Confidence 5788999999442 333333 3444 789999998 875 55566778
Q ss_pred HHHHHHHHcCCCeEEEEEeCC
Q psy9646 191 EHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 191 ~~~~~~~~~~~~~~i~~inK~ 211 (211)
++++.+++.++| +|+++||.
T Consensus 171 ~~i~eLk~~~kP-fiivlN~~ 190 (492)
T TIGR02836 171 RVIEELKELNKP-FIILLNST 190 (492)
T ss_pred HHHHHHHhcCCC-EEEEEECc
Confidence 899999999999 88999985
No 348
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=96.56 E-value=0.016 Score=47.75 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=42.4
Q ss_pred EEeeeCCceeEeecCCccccc---HhHHhhhcc------ccceEEEEEecc-CCCCcchHHHHHHHHHc-C---CCeEEE
Q psy9646 141 VEYATENRHYSHTDCPGHADY---IKNMITGTS------QMDGAILVVAAT-DGAMPQTREHLLLAKQI-G---VTNIVV 206 (211)
Q Consensus 141 ~~~~~~~~~~~~iDtPG~~~~---~~~~~~~~~------~~d~~~~vvd~~-~~~~~~~~~~~~~~~~~-~---~~~~i~ 206 (211)
......+.++.++||||..+. .++....++ ..|++++|.... ......++.+++.+... | -.+.|+
T Consensus 79 ~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IV 158 (313)
T TIGR00991 79 VSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLV 158 (313)
T ss_pred EEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEE
Confidence 334457889999999997753 122222222 589999995432 23555666666666542 3 133677
Q ss_pred EEeC
Q psy9646 207 FINK 210 (211)
Q Consensus 207 ~inK 210 (211)
++++
T Consensus 159 VfTh 162 (313)
T TIGR00991 159 VLTH 162 (313)
T ss_pred EEEC
Confidence 7775
No 349
>KOG0465|consensus
Probab=96.53 E-value=0.0073 Score=53.43 Aligned_cols=99 Identities=24% Similarity=0.310 Sum_probs=66.3
Q ss_pred ChHHHHHhhhCCCCCC--------------------CCCC-CeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeec
Q psy9646 1 MELLNQIDTYIPQPVR--------------------DLDK-PFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGY 59 (211)
Q Consensus 1 ~~ll~~l~~~i~~p~~--------------------~~~~-p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~ 59 (211)
+.|||++.+++|-|.- ..++ ||.-...-+...++ |..-.-||-+|.++.||.+.=.-+
T Consensus 297 QPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~f-GqLTyvRvYqG~L~kG~~iyN~rt 375 (721)
T KOG0465|consen 297 QPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGRF-GQLTYVRVYQGTLSKGDTIYNVRT 375 (721)
T ss_pred chHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecCc-cceEEEEEeeeeecCCcEEEecCC
Confidence 3688998888876621 0122 55555444444455 888889999999999998876555
Q ss_pred CceeeEEEEEEEecc----eecceecccCceehhccCCCccccccccccccc
Q psy9646 60 GRQFKTTVTGIEMFH----KILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107 (211)
Q Consensus 60 ~~~~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~ 107 (211)
++ +.++..+-..| ++++++.|||++++ -|+ +...|+++.+.
T Consensus 376 gK--Kvrv~RL~rmHa~~medV~~v~AG~I~al--fGi---dcasGDTftd~ 420 (721)
T KOG0465|consen 376 GK--KVRVGRLVRMHANDMEDVNEVLAGDICAL--FGI---DCASGDTFTDK 420 (721)
T ss_pred Cc--eeEhHHHhHhcccccchhhhhhccceeee--ecc---ccccCceeccC
Confidence 54 66666654333 68999999999986 222 55566666543
No 350
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=96.52 E-value=0.0081 Score=46.26 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=41.3
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hH-HHHHHHHH--cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TR-EHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~-~~~~~~~~--~~~~~~i~~inK~ 211 (211)
...+.+.||+|+++... ......+|++++|.|......-+ .+ .++..++. .++| +|++.||+
T Consensus 65 ~v~l~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~ 130 (195)
T cd01873 65 SVSLRLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP-VILVGCKL 130 (195)
T ss_pred EEEEEEEeCCCChhhhh--cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCC-EEEEEEch
Confidence 45678999999976432 23568999999999986554322 22 23343433 2566 88999995
No 351
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.45 E-value=0.011 Score=49.23 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=51.1
Q ss_pred EeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-----------CcchHHHHHHHHH----cC
Q psy9646 136 INVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-----------MPQTREHLLLAKQ----IG 200 (211)
Q Consensus 136 v~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-----------~~~~~~~~~~~~~----~~ 200 (211)
.......+..++..+.++|++|++..-+.-..-..++++++||+|..+-- ...+...++.+.. .+
T Consensus 149 ~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~ 228 (317)
T cd00066 149 TGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFAN 228 (317)
T ss_pred CCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccC
Confidence 34445556677888999999999876666666678999999999987531 1222233333322 35
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
.| +++++||.
T Consensus 229 ~p-ill~~NK~ 238 (317)
T cd00066 229 TS-IILFLNKK 238 (317)
T ss_pred CC-EEEEccCh
Confidence 67 88999994
No 352
>COG2262 HflX GTPases [General function prediction only]
Probab=96.43 E-value=0.0078 Score=50.93 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=44.9
Q ss_pred CceeEeecCCcccc-----c---HhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHAD-----Y---IKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~-----~---~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
+.++.+.||-|+-. + .+.+......||+.+.|||+.+.-. .+-....+.+... ..| +|+|.||+
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p-~i~v~NKi 314 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIP-IILVLNKI 314 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCC-EEEEEecc
Confidence 57899999999442 2 3455566678999999999987732 3333455555554 456 88999995
No 353
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.38 E-value=0.0092 Score=44.71 Aligned_cols=61 Identities=21% Similarity=0.341 Sum_probs=45.5
Q ss_pred eeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 149 HYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 149 ~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++++|||+.... ....++..+|.+++++++...-.......++.++..+.+.+.+++|++
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~ 124 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRV 124 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCC
Confidence 7899999986433 455678899999999998765555566677777776766566788974
No 354
>KOG0052|consensus
Probab=96.29 E-value=0.0039 Score=52.34 Aligned_cols=111 Identities=24% Similarity=0.349 Sum_probs=91.1
Q ss_pred EeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceecccCceehhccCCCccccccccccc
Q psy9646 26 VEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMA 105 (211)
Q Consensus 26 v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~ 105 (211)
.+++|+..+.| +..|.++.++.+...|... +.++++.++++..-.++.+|++++++..+++..++.+|.++.
T Consensus 186 ~~~~~~~~g~~------~~t~iie~~~~v~~~~~~~--~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~ 257 (391)
T KOG0052|consen 186 LQDVYKIGGIG------VETGISEPGMDVTFAPSGV--TTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVG 257 (391)
T ss_pred hccceeeccee------eeeeeccCccceecccccc--ccccccEEEEeccCccCCCcceeeeecccCccCcccccceec
Confidence 44555544444 8889999999999888864 888999999998888999999999999999999999998776
Q ss_pred c-cchhhhhhhhcccccccccchhhcccceEEeEeEEEee
Q psy9646 106 K-PVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYA 144 (211)
Q Consensus 106 ~-~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~ 144 (211)
. +..++.....|.++.....++-.+..+++-.+.+++.+
T Consensus 258 dsK~~p~~~~~g~t~qviilnhpgqis~gy~pvldcht~h 297 (391)
T KOG0052|consen 258 DSKNDPPVEAAGFTAQVIILNHPGQISVGYAPVLDCHTAH 297 (391)
T ss_pred ccccCCccccccceeeEEEecCccccCCCccccccccccc
Confidence 4 55667777888888888999999999998888766654
No 355
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.24 E-value=0.019 Score=48.24 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=52.9
Q ss_pred eEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-----------CcchHHHHHHHHH----
Q psy9646 134 ITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-----------MPQTREHLLLAKQ---- 198 (211)
Q Consensus 134 ~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-----------~~~~~~~~~~~~~---- 198 (211)
-|.......+...+..+.++|.+|++.+-+.-..-..++++++||+|..+-- ...+...++.+..
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 3444455567778888999999999877666666778999999999987521 1223333333332
Q ss_pred cCCCeEEEEEeCC
Q psy9646 199 IGVTNIVVFINKF 211 (211)
Q Consensus 199 ~~~~~~i~~inK~ 211 (211)
.+.| +++++||.
T Consensus 250 ~~~p-iil~~NK~ 261 (342)
T smart00275 250 ANTS-IILFLNKI 261 (342)
T ss_pred cCCc-EEEEEecH
Confidence 3566 88999994
No 356
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=96.24 E-value=0.025 Score=44.80 Aligned_cols=78 Identities=23% Similarity=0.292 Sum_probs=45.9
Q ss_pred ceEEeEeEEEeee-CCceeEeecCCcccccHhH-----HhhhccccceEEEEEeccCCCCcchHH----HHHHHHHc--C
Q psy9646 133 GITINVAHVEYAT-ENRHYSHTDCPGHADYIKN-----MITGTSQMDGAILVVAATDGAMPQTRE----HLLLAKQI--G 200 (211)
Q Consensus 133 g~tv~~~~~~~~~-~~~~~~~iDtPG~~~~~~~-----~~~~~~~~d~~~~vvd~~~~~~~~~~~----~~~~~~~~--~ 200 (211)
+.|.+.....+.. ..-.+.+.|+||+.+|+.. ...-++.+++.|+|+|+...-...+.. .++.+.+. +
T Consensus 32 ~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~ 111 (232)
T PF04670_consen 32 EPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPN 111 (232)
T ss_dssp ----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT
T ss_pred CCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCC
Confidence 3455555555543 3458999999999987665 455678999999999998333333222 33334333 3
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
++ +.+++.||
T Consensus 112 ~~-v~vfiHK~ 121 (232)
T PF04670_consen 112 IK-VFVFIHKM 121 (232)
T ss_dssp -E-EEEEEE-C
T ss_pred Ce-EEEEEeec
Confidence 44 66789986
No 357
>COG3596 Predicted GTPase [General function prediction only]
Probab=96.21 E-value=0.016 Score=46.66 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=51.1
Q ss_pred CCceeEeecCCcccc-------cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC-CeEEEEEeC
Q psy9646 146 ENRHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV-TNIVVFINK 210 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~-~~~i~~inK 210 (211)
.++.+++.||||..+ +.+....-+...|.+++++++.+.--..+...+......+. .+++++||-
T Consensus 85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ 157 (296)
T COG3596 85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQ 157 (296)
T ss_pred cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEeh
Confidence 457899999999776 55667777788999999999988877777777777766555 558888884
No 358
>KOG1954|consensus
Probab=96.19 E-value=0.01 Score=49.70 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=48.3
Q ss_pred ceeEeecCCccc-----------ccHhHHhhhccccceEEEEEeccC-CCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHA-----------DYIKNMITGTSQMDGAILVVAATD-GAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~-----------~~~~~~~~~~~~~d~~~~vvd~~~-~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+++++||||.- +|......=++.+|.++++.|+.. .+.+...+++..++...-+ +=+|+||.
T Consensus 147 e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edk-iRVVLNKA 221 (532)
T KOG1954|consen 147 ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDK-IRVVLNKA 221 (532)
T ss_pred hheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcce-eEEEeccc
Confidence 478999999943 466666566678999999999863 4667788899999876654 55789994
No 359
>KOG0078|consensus
Probab=96.18 E-value=0.044 Score=42.29 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=52.6
Q ss_pred EeEeEEEeeeCCce--eEeecCCcccccHhHHhhhccccceEEEEEeccCCC-CcchHHHHHHHHH---cCCCeEEEEEe
Q psy9646 136 INVAHVEYATENRH--YSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQ---IGVTNIVVFIN 209 (211)
Q Consensus 136 v~~~~~~~~~~~~~--~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-~~~~~~~~~~~~~---~~~~~~i~~in 209 (211)
++...-+.+.++.+ .-+.||.|++.|-.-.-+-...|+++++|.|..... +...+.+++..++ .+++ +++|-|
T Consensus 47 IDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~-~~LvGN 125 (207)
T KOG0078|consen 47 IDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVV-KILVGN 125 (207)
T ss_pred EEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCc-EEEeec
Confidence 34444444444443 457999999999988888889999999999986543 3444445555544 3577 779999
Q ss_pred CC
Q psy9646 210 KF 211 (211)
Q Consensus 210 K~ 211 (211)
|+
T Consensus 126 K~ 127 (207)
T KOG0078|consen 126 KC 127 (207)
T ss_pred cc
Confidence 96
No 360
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.14 E-value=0.02 Score=42.80 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=47.1
Q ss_pred CCceeEeecCCcccccHhHHhhhc--cccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGT--SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~--~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.++++|||+... ......+ ..+|.+++++.+...-.....+.++.+.+.+.+.+-+++|++
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~ 131 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMS 131 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 456799999998632 2233333 678999999987655556677888999999988666788874
No 361
>KOG0092|consensus
Probab=96.12 E-value=0.02 Score=43.58 Aligned_cols=64 Identities=20% Similarity=0.191 Sum_probs=49.5
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-CcchHHHHHHHHHcCCCeEEE--EEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQIGVTNIVV--FINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-~~~~~~~~~~~~~~~~~~~i~--~inK~ 211 (211)
-++.+=||.|+++|-.-+-.=.++|+++|+|-|..+.- +...+.+++.+++..-|.+++ |-||+
T Consensus 54 ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~ 120 (200)
T KOG0092|consen 54 IKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKA 120 (200)
T ss_pred EEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchh
Confidence 56778999999998777666778999999999987554 355667888888877676655 67874
No 362
>KOG0084|consensus
Probab=96.00 E-value=0.066 Score=40.98 Aligned_cols=89 Identities=13% Similarity=0.103 Sum_probs=61.9
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCc--eeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENR--HYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ 198 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~--~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~ 198 (211)
.-+..+.+-...+-++....+++..+. .+-+=||.|+++|-.-+.+=.+.|+++|+|-|..+... ..-..++..+.+
T Consensus 30 ~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~ 109 (205)
T KOG0084|consen 30 KDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDR 109 (205)
T ss_pred ccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhh
Confidence 345555555555666666666666654 45678999999999888888899999999999876543 333334444544
Q ss_pred c---CCCeEEEEEeCC
Q psy9646 199 I---GVTNIVVFINKF 211 (211)
Q Consensus 199 ~---~~~~~i~~inK~ 211 (211)
. ++| .++|-||+
T Consensus 110 ~~~~~v~-~lLVGNK~ 124 (205)
T KOG0084|consen 110 YASENVP-KLLVGNKC 124 (205)
T ss_pred hccCCCC-eEEEeecc
Confidence 3 456 56899995
No 363
>KOG0073|consensus
Probab=95.99 E-value=0.038 Score=41.10 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=53.3
Q ss_pred chhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHH----HHcC
Q psy9646 126 APEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLA----KQIG 200 (211)
Q Consensus 126 ~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~----~~~~ 200 (211)
.......|+.++ +++.+++++++-|..|+..+...=..=.+.+|+.++|+|+.+..- .+....+..+ +..|
T Consensus 42 ~~i~pt~gf~Ik----tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG 117 (185)
T KOG0073|consen 42 DTISPTLGFQIK----TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAG 117 (185)
T ss_pred cccCCccceeeE----EEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcC
Confidence 333444444444 677899999999999987765544445578899999999865542 2223333333 3357
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
.| ++++.||.
T Consensus 118 ~~-~Lvlank~ 127 (185)
T KOG0073|consen 118 AP-LLVLANKQ 127 (185)
T ss_pred Cc-eEEEEecC
Confidence 67 67889983
No 364
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.99 E-value=0.015 Score=44.41 Aligned_cols=51 Identities=10% Similarity=-0.093 Sum_probs=35.3
Q ss_pred ccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 158 HADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+..|.......+..+|++++|+|+.+........+. ....+.| +++++||+
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~-~ilV~NK~ 71 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFGGNNP-VILVGNKI 71 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCCccchhHH--HhcCCCc-EEEEEEch
Confidence 333566677777999999999999876544444442 2234566 77999996
No 365
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.94 E-value=0.022 Score=45.73 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=48.5
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK 210 (211)
....++|+|=- --..+.+++..+|++++|...+..-....++++++++.+++| ..+++||
T Consensus 164 ~~~~IIDsaaG--~gCpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr 223 (284)
T COG1149 164 ADLLIIDSAAG--TGCPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINR 223 (284)
T ss_pred cceeEEecCCC--CCChHHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEec
Confidence 36788999632 125688999999999999998766666778899999999999 5578998
No 366
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.88 E-value=0.044 Score=33.38 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=25.8
Q ss_pred hHHhhhccc-cceEEEEEeccCCCC--cch-HHHHHHHHH-c-CCCeEEEEEeCC
Q psy9646 163 KNMITGTSQ-MDGAILVVAATDGAM--PQT-REHLLLAKQ-I-GVTNIVVFINKF 211 (211)
Q Consensus 163 ~~~~~~~~~-~d~~~~vvd~~~~~~--~~~-~~~~~~~~~-~-~~~~~i~~inK~ 211 (211)
.++..|++. .++++|++|..+.-. -.+ ..+++..+. . +.| +++|+||+
T Consensus 4 ~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P-~i~V~nK~ 57 (58)
T PF06858_consen 4 MQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKP-VIVVLNKI 57 (58)
T ss_dssp HHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS--EEEEE--T
T ss_pred HHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCC-EEEEEecc
Confidence 456677764 579999999874433 222 223444443 3 566 77999996
No 367
>KOG0075|consensus
Probab=95.80 E-value=0.052 Score=39.72 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=46.7
Q ss_pred EEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHH----HHHHHHHcCCCeEEEEEeCC
Q psy9646 140 HVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTRE----HLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 140 ~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~----~~~~~~~~~~~~~i~~inK~ 211 (211)
...++-+.-.+.+-|.||+..|-..-..=-..+|+++++|||.+.-. +..+. ++..-.-.|+| +.+.-||+
T Consensus 57 mrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip-~LVLGnK~ 132 (186)
T KOG0075|consen 57 MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIP-LLVLGNKI 132 (186)
T ss_pred eEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCc-EEEecccc
Confidence 34455556678889999998886544444578999999999986322 22222 22222346888 66778885
No 368
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.74 E-value=0.016 Score=46.10 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=33.5
Q ss_pred eeEeecCCccccc------HhHHhhhccc--cceEEEEEeccCCCCcchHH-----HHHHHHHcCCCeEEEEEeCC
Q psy9646 149 HYSHTDCPGHADY------IKNMITGTSQ--MDGAILVVAATDGAMPQTRE-----HLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 149 ~~~~iDtPG~~~~------~~~~~~~~~~--~d~~~~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~i~~inK~ 211 (211)
.+.++||||+.++ .......+.. .=++++++|+..--.+..-- .+....+.+.| .|.++||+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP-~vnvlsK~ 166 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELP-HVNVLSKI 166 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSE-EEEEE--G
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCC-EEEeeecc
Confidence 6889999997764 4445555553 33788899987554432211 11123447899 66899995
No 369
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.72 E-value=0.021 Score=41.40 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=42.4
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHc-CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQI-GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~-~~~~~i~~inK~ 211 (211)
+.++++|||+. +.......+..+|.++++++....-...+...++.+... +.+.+.+++|++
T Consensus 45 yd~VIiD~p~~--~~~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~ 107 (139)
T cd02038 45 YDYIIIDTGAG--ISDNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRA 107 (139)
T ss_pred CCEEEEECCCC--CCHHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 67899999985 344556788999999999997544333444555555432 334466889985
No 370
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=95.71 E-value=0.034 Score=43.39 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=42.0
Q ss_pred EEEeeeCCceeEeecCCccccc-------HhHHhh----hccccceEEEEEeccCCCCcchHHHHHHHHH-cC---CCeE
Q psy9646 140 HVEYATENRHYSHTDCPGHADY-------IKNMIT----GTSQMDGAILVVAATDGAMPQTREHLLLAKQ-IG---VTNI 204 (211)
Q Consensus 140 ~~~~~~~~~~~~~iDtPG~~~~-------~~~~~~----~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~-~~---~~~~ 204 (211)
.......+.++.++||||..+- .+++.. .....+++++|+... .++..++..++.+.. .| .+.+
T Consensus 41 ~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ 119 (212)
T PF04548_consen 41 KYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHT 119 (212)
T ss_dssp EEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGE
T ss_pred eeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHh
Confidence 3344678899999999996542 233333 334679999999987 677777777766654 33 2345
Q ss_pred EEEEe
Q psy9646 205 VVFIN 209 (211)
Q Consensus 205 i~~in 209 (211)
|++.+
T Consensus 120 ivvfT 124 (212)
T PF04548_consen 120 IVVFT 124 (212)
T ss_dssp EEEEE
T ss_pred hHHhh
Confidence 55554
No 371
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=95.69 E-value=0.036 Score=42.75 Aligned_cols=65 Identities=20% Similarity=0.149 Sum_probs=46.2
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..+.++++|||....... ...-...+|.+++++++...-.....+.++.+...+.+.+-+++||+
T Consensus 126 ~~yD~ViiD~pp~~~~~~-~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~ 190 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTVTD-AAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKV 190 (204)
T ss_pred hcCCEEEEeCCCccccch-HHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCc
Confidence 346789999997432222 22233568999999998666556667778888888888666789984
No 372
>KOG1144|consensus
Probab=95.69 E-value=0.014 Score=52.96 Aligned_cols=72 Identities=22% Similarity=0.230 Sum_probs=52.7
Q ss_pred CeeEEEeeEEeecCCcEE-EEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceecccCceehhccC
Q psy9646 21 PFYLPVEHTYSIPGRGTV-VTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQAGDQLGALVKG 92 (211)
Q Consensus 21 p~~~~v~~~~~~~~~G~v-~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~ 92 (211)
|+.+.|-.-+-.+.++++ +.-.|+.|.+++|..+.+..-..-.-.+|.||++++++++.|..|+-|++.|.+
T Consensus 935 Pc~L~ilpn~ifN~RdPiv~GV~V~~GilkiGTPiCv~~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~ 1007 (1064)
T KOG1144|consen 935 PCVLQILPNCIFNKRDPIVLGVDVEEGILKIGTPICVPKREFIDLGRVASIENNHKPVDYAKKGQEVAIKIEA 1007 (1064)
T ss_pred eeehhhhhHhhccCCCCeEEEEEeecCeeecCCceEEeccceeeeeeeeeecccCcccchhhcCCeEEEEEec
Confidence 444444442222456665 466899999999999886543222357899999999999999999999998875
No 373
>PTZ00258 GTP-binding protein; Provisional
Probab=95.46 E-value=0.019 Score=48.92 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=28.8
Q ss_pred ceeEeecCCcccc-------cHhHHhhhccccceEEEEEecc
Q psy9646 148 RHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAAT 182 (211)
Q Consensus 148 ~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~ 182 (211)
.++.|+||||... +....+..++.+|++++|||+.
T Consensus 85 aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 85 AQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 4699999999542 4556788889999999999984
No 374
>KOG0094|consensus
Probab=95.40 E-value=0.11 Score=39.84 Aligned_cols=74 Identities=14% Similarity=0.074 Sum_probs=51.8
Q ss_pred eEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCC-CCcchHHHHHHHHHcCCC--e-EEEEEeC
Q psy9646 137 NVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDG-AMPQTREHLLLAKQIGVT--N-IVVFINK 210 (211)
Q Consensus 137 ~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~-~~~~~~~~~~~~~~~~~~--~-~i~~inK 210 (211)
.+....++.....+-+=||.|+++|-.-+-+=+++++++++|-|..+. -+.++..+++-+.+.+-. . +++|-||
T Consensus 60 lskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnK 137 (221)
T KOG0094|consen 60 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNK 137 (221)
T ss_pred EEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccc
Confidence 333344444445566799999999998888888999999999997643 457777777777654322 2 4456777
No 375
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=95.37 E-value=0.047 Score=43.27 Aligned_cols=64 Identities=17% Similarity=0.377 Sum_probs=44.3
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.++++|||+... ..+..++..+|.+++++++...-........+.+...+.+.+-+++|+.
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~ 170 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRV 170 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECC
Confidence 346799999998643 3455667789999999987544333444555666677777555788974
No 376
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=95.30 E-value=0.065 Score=39.64 Aligned_cols=58 Identities=17% Similarity=0.078 Sum_probs=38.4
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHHc----CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQI----GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~~----~~~~~i~~inK~ 211 (211)
..+.+-||+|.... .-...+|++++|.|....-.-+. ..++..+... ++| ++++.||.
T Consensus 47 ~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~p-iilvgnK~ 109 (158)
T cd04103 47 HLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIP-LILVGTQD 109 (158)
T ss_pred EEEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeeHH
Confidence 45778999999752 22367899999999876543333 3344444332 356 88999994
No 377
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.26 E-value=0.054 Score=47.96 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=53.2
Q ss_pred eCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeC
Q psy9646 145 TENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210 (211)
Q Consensus 145 ~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK 210 (211)
.+..+++|+.+| +=+.+|+.-...||++++++|+.-|..-.|.+.+.++...|.|++.-|++.
T Consensus 110 gK~RRiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~Th 172 (1077)
T COG5192 110 GKTRRITFLECP---SDLHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTH 172 (1077)
T ss_pred cceeEEEEEeCh---HHHHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEee
Confidence 355789999999 335677788899999999999999999999999999999999987556653
No 378
>PHA02518 ParA-like protein; Provisional
Probab=95.23 E-value=0.053 Score=41.79 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=39.6
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHH-----cCCCeEEEEEeC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQ-----IGVTNIVVFINK 210 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~-----~~~~~~i~~inK 210 (211)
..+.++++||||.. ...+..++..+|.+++++.....-.....+.++.+.. .+.+.+.++.|+
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~ 142 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISR 142 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEec
Confidence 34679999999974 3446678889999999998754333333333333332 245544456665
No 379
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=95.23 E-value=0.032 Score=46.02 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=48.1
Q ss_pred EEeEeEEEeeeCCceeEeecCCcccc-------cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 135 TINVAHVEYATENRHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 135 tv~~~~~~~~~~~~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
|...-.+-+++++.+|=++|+||.-. .-+++++.++.||++++|+|+.+.... -..+.+.+...|+
T Consensus 97 Tl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GI 169 (365)
T COG1163 97 TLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGI 169 (365)
T ss_pred ecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCe
Confidence 44444556778899999999999542 346788999999999999999766532 3346666666664
No 380
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.22 E-value=0.025 Score=42.01 Aligned_cols=61 Identities=20% Similarity=0.153 Sum_probs=38.8
Q ss_pred CceeEeecCCccccc---H-----hHHhhhccccceEEEEEeccCCCCc--chHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADY---I-----KNMITGTSQMDGAILVVAATDGAMP--QTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~---~-----~~~~~~~~~~d~~~~vvd~~~~~~~--~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..+++|+||||..+- + +..+.+....|.+++++|+...... .......++... . + +++||+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a--d-~-ivlnk~ 156 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA--D-R-ILLNKT 156 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC--C-E-EEEecc
Confidence 357899999997642 2 3345667788999999998644321 122344455443 3 4 578995
No 381
>KOG0469|consensus
Probab=95.16 E-value=0.012 Score=51.16 Aligned_cols=87 Identities=22% Similarity=0.382 Sum_probs=60.1
Q ss_pred CCCCCeeEEEeeEEeecCCcEEE-EEEEEEEEEecCCEEEEeecC----ceeeEEEEEEE-------ecceecceecccC
Q psy9646 17 DLDKPFYLPVEHTYSIPGRGTVV-TGRLERGIVKKGMECEFTGYG----RQFKTTVTGIE-------MFHKILDEAQAGD 84 (211)
Q Consensus 17 ~~~~p~~~~v~~~~~~~~~G~v~-~G~v~~G~i~~g~~v~i~p~~----~~~~~~v~~i~-------~~~~~~~~a~~G~ 84 (211)
+.++|+.|.|+.....+..|+-+ -|||-+|++..|+++.+...+ +.....+|+|+ ++-++++...+|.
T Consensus 373 D~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGN 452 (842)
T KOG0469|consen 373 DPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGN 452 (842)
T ss_pred CCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCc
Confidence 56789999999998888888865 899999999999999994322 11123344443 2237899999999
Q ss_pred ceehhccCCCccccccccccc
Q psy9646 85 QLGALVKGMKRDEVNRGLIMA 105 (211)
Q Consensus 85 ~v~~~l~~~~~~~v~~G~ii~ 105 (211)
++++ -+++.--++.|.+-.
T Consensus 453 IiGl--vGvDqfLvKtGTiTt 471 (842)
T KOG0469|consen 453 IIGL--VGVDQFLVKTGTITT 471 (842)
T ss_pred EEEE--eehhHhhhccCceee
Confidence 9986 233333344454433
No 382
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=95.13 E-value=0.035 Score=44.24 Aligned_cols=63 Identities=21% Similarity=0.378 Sum_probs=44.5
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+.++++|||+... .....++..+|.+++++.+...-.......++.+...+...+.+++|++
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~ 173 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRL 173 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCc
Confidence 46789999998643 2345667889999999987544444556677777777754466788874
No 383
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=95.12 E-value=0.027 Score=45.77 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=27.4
Q ss_pred eeEeecCCcccc-------cHhHHhhhccccceEEEEEecc
Q psy9646 149 HYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAAT 182 (211)
Q Consensus 149 ~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~ 182 (211)
++.|+|+||..+ +.......++.+|++++|||+.
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 689999999542 4456777789999999999984
No 384
>KOG1489|consensus
Probab=95.07 E-value=0.078 Score=43.68 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=47.1
Q ss_pred eEEeEeEEEeeeCCc-eeEeecCCcccc-------cHhHHhhhccccceEEEEEeccCCC----CcchHHHHHHHHH---
Q psy9646 134 ITINVAHVEYATENR-HYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATDGA----MPQTREHLLLAKQ--- 198 (211)
Q Consensus 134 ~tv~~~~~~~~~~~~-~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~~~----~~~~~~~~~~~~~--- 198 (211)
+|+.-+..+...+++ |+.+-|.||.-+ +--+.+.=++.++..+||||...+. +.+-+.+++.+..
T Consensus 229 TTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek 308 (366)
T KOG1489|consen 229 TTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK 308 (366)
T ss_pred eeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh
Confidence 444445555555554 499999999331 2334445567789999999998762 2222333333322
Q ss_pred -cCCCeEEEEEeCC
Q psy9646 199 -IGVTNIVVFINKF 211 (211)
Q Consensus 199 -~~~~~~i~~inK~ 211 (211)
+.-++.++|+|||
T Consensus 309 ~L~~rp~liVaNKi 322 (366)
T KOG1489|consen 309 GLADRPALIVANKI 322 (366)
T ss_pred hhccCceEEEEecc
Confidence 2333366899997
No 385
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=94.99 E-value=0.065 Score=41.93 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=46.7
Q ss_pred ceeEeecCCcccccHhH-Hhhhccc--cceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKN-MITGTSQ--MDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~-~~~~~~~--~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.++++|||-....... +...+.+ +|.+++|+.....-..+.++.++.++..+.+..-+++|++
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~ 180 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRV 180 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 77999999854333222 3344444 4899999998766667788899999999988666789984
No 386
>CHL00175 minD septum-site determining protein; Validated
Probab=94.98 E-value=0.043 Score=44.58 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=44.4
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+.++++|||+.. ......++..+|.++++++....--......++.+...+.+.+-+++|++
T Consensus 126 ~yD~VIiDtpp~~--~~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~ 188 (281)
T CHL00175 126 GYDYILIDCPAGI--DVGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRV 188 (281)
T ss_pred CCCEEEEeCCCCC--CHHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEecc
Confidence 4679999999863 33455667789999999886543334555667777777766566788974
No 387
>KOG0087|consensus
Probab=94.98 E-value=0.087 Score=40.78 Aligned_cols=98 Identities=15% Similarity=0.088 Sum_probs=62.4
Q ss_pred hhhhcccccccccchhhcccceEEeEeEEEeeeCCce--eEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cch
Q psy9646 113 KLAKVKQYADIDNAPEEKARGITINVAHVEYATENRH--YSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQT 189 (211)
Q Consensus 113 ~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~--~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~ 189 (211)
|++.+..+...+....+....+-++....+...++.. ..+=||.|+++|-.-.-+=.+.|-++++|-|.....+ ..-
T Consensus 26 GKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv 105 (222)
T KOG0087|consen 26 GKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENV 105 (222)
T ss_pred chhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHH
Confidence 4444444443444455555555566666666655544 4578999999987444344478899999999865543 444
Q ss_pred HHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 190 REHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 190 ~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
.++++.|+.. +++ ++++-||+
T Consensus 106 ~rWL~ELRdhad~niv-imLvGNK~ 129 (222)
T KOG0087|consen 106 ERWLKELRDHADSNIV-IMLVGNKS 129 (222)
T ss_pred HHHHHHHHhcCCCCeE-EEEeecch
Confidence 5566777654 355 67788985
No 388
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=94.91 E-value=0.038 Score=46.66 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=28.4
Q ss_pred ceeEeecCCcccc-------cHhHHhhhccccceEEEEEecc
Q psy9646 148 RHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAAT 182 (211)
Q Consensus 148 ~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~ 182 (211)
.++.++|+||..+ +....+..++.+|++++|||+.
T Consensus 66 a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 66 ATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 3689999999542 4456777889999999999985
No 389
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.82 E-value=0.1 Score=39.10 Aligned_cols=63 Identities=22% Similarity=0.310 Sum_probs=37.1
Q ss_pred CCceeEeecCCcccc----cHhHHhhhc--cccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHAD----YIKNMITGT--SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~----~~~~~~~~~--~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.++++||||... .+.++.... ...|.+++|+|+..+.. .-+...+..+..++. -+++||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~-~~~~~~~~~~~~~~~--~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD-AVNQAKAFNEALGIT--GVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH-HHHHHHHHHhhCCCC--EEEEECC
Confidence 345688999999753 333332221 24799999999854322 223344444455654 3567985
No 390
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=94.78 E-value=0.058 Score=40.43 Aligned_cols=48 Identities=17% Similarity=0.073 Sum_probs=35.6
Q ss_pred CCccc-ccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeE
Q psy9646 155 CPGHA-DYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNI 204 (211)
Q Consensus 155 tPG~~-~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~ 204 (211)
-|||- +.+.++...++.||++++|+|+.++....+..+++.+ .+.|.+
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~i 50 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRI 50 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEE
Confidence 47865 4678899999999999999999887766665555544 245633
No 391
>KOG0070|consensus
Probab=94.69 E-value=0.068 Score=40.39 Aligned_cols=71 Identities=18% Similarity=0.157 Sum_probs=47.6
Q ss_pred EEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC--cchHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 140 HVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM--PQTREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 140 ~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~--~~~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
...+++++..+.+-|..|+..+..--..=....++++||||+.+..- ..-.++.+.+.. .+.| ++++.||.
T Consensus 53 VE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~-llv~aNKq 128 (181)
T KOG0070|consen 53 VETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAP-LLVFANKQ 128 (181)
T ss_pred eeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCce-EEEEechh
Confidence 34566678899999999997766555555678899999999975542 222223333322 2455 77889984
No 392
>PRK01889 GTPase RsgA; Reviewed
Probab=94.43 E-value=0.087 Score=44.54 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=33.5
Q ss_pred ccccceEEEEEeccCCCCc-chHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 169 TSQMDGAILVVAATDGAMP-QTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 169 ~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++.+|.+++|+++...... ...+++..+...++++ ++++||+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~p-iIVLNK~ 152 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEP-VIVLTKA 152 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCE-EEEEECh
Confidence 5778999999999766655 4566788888999995 5799996
No 393
>KOG0093|consensus
Probab=94.39 E-value=0.1 Score=38.21 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=43.1
Q ss_pred eeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHH---HcCCCeEEEEEeCC
Q psy9646 149 HYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAK---QIGVTNIVVFINKF 211 (211)
Q Consensus 149 ~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~---~~~~~~~i~~inK~ 211 (211)
.+-+-||.|++.+-.-+..-.+++++.+++-|...... ..-+.+.-+.+ ..+.+ +|++-||+
T Consensus 71 klQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naq-vilvgnKC 136 (193)
T KOG0093|consen 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQ-VILVGNKC 136 (193)
T ss_pred EEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCce-EEEEeccc
Confidence 45578999999977666667789999999999864432 11222333332 34666 88999996
No 394
>KOG2484|consensus
Probab=94.33 E-value=0.093 Score=44.43 Aligned_cols=62 Identities=18% Similarity=0.134 Sum_probs=45.0
Q ss_pred eEeecCCccc-ccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHH-HHcCCCeEEEEEeCC
Q psy9646 150 YSHTDCPGHA-DYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLA-KQIGVTNIVVFINKF 211 (211)
Q Consensus 150 ~~~iDtPG~~-~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~-~~~~~~~~i~~inK~ 211 (211)
..-.|.+++. .|.++...-++.+|++|-|+||++.......+.=++. ...|-+.+|+++||+
T Consensus 124 ~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~ 187 (435)
T KOG2484|consen 124 ENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKI 187 (435)
T ss_pred hhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehh
Confidence 3446666655 3678888899999999999999998875544443333 245546689999996
No 395
>KOG1486|consensus
Probab=94.26 E-value=0.086 Score=42.15 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=42.3
Q ss_pred EEEeeeCCceeEeecCCcccc-------cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 140 HVEYATENRHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 140 ~~~~~~~~~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.+-.++++..|-++|-||.-. --+++++..+-||.+++|+||..... |-..+-+.+...|+
T Consensus 101 pGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~-qr~~le~ELe~vGi 168 (364)
T KOG1486|consen 101 PGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSED-QREILEKELEAVGI 168 (364)
T ss_pred cceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchh-HHHHHHHHHHHhce
Confidence 344667888999999999543 34678888889999999999977642 22223344555443
No 396
>PRK12289 GTPase RsgA; Reviewed
Probab=94.18 E-value=0.12 Score=43.69 Aligned_cols=42 Identities=29% Similarity=0.415 Sum_probs=30.3
Q ss_pred ccccceEEEEEeccCCCCc--chHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 169 TSQMDGAILVVAATDGAMP--QTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 169 ~~~~d~~~~vvd~~~~~~~--~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++.+|.+++|+|+.+.... ...+++..+...++| +|+|+||+
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip-~ILVlNK~ 130 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLSRFLVKAESTGLE-IVLCLNKA 130 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEch
Confidence 6789999999998754322 224455556667888 67899996
No 397
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.16 E-value=0.12 Score=37.95 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=35.7
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++.++|+||||.. ......+..||.++++.... ......+++. .-...-.+ +++||+
T Consensus 91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe---~~D~y~~~k~-~~~~~~~~-~~~~k~ 147 (148)
T cd03114 91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPG---AGDDIQAIKA-GIMEIADI-VVVNKA 147 (148)
T ss_pred CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCC---chhHHHHhhh-hHhhhcCE-EEEeCC
Confidence 5679999999964 34456888999999988764 1222223222 22222324 789996
No 398
>KOG1532|consensus
Probab=94.10 E-value=0.26 Score=40.06 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=39.9
Q ss_pred CceeEeecCCcccc-cHhH-----Hhhhc--cccceEEEEEeccCCCCcchHH--HHH---HHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHAD-YIKN-----MITGT--SQMDGAILVVAATDGAMPQTRE--HLL---LAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~-~~~~-----~~~~~--~~~d~~~~vvd~~~~~~~~~~~--~~~---~~~~~~~~~~i~~inK~ 211 (211)
..++.+|||||+-+ |... ...++ ..--++++++|....-.+.+-. .+. ++.+.+.| +|++.||.
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp-~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLP-FIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCC-eEEEEecc
Confidence 35689999999654 3222 22222 2335888899986665544322 223 34567899 88999995
No 399
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=94.09 E-value=0.06 Score=38.33 Aligned_cols=35 Identities=34% Similarity=0.460 Sum_probs=29.1
Q ss_pred eecCCc----ccccHhHHhhhccccceEEEEEeccCCCC
Q psy9646 152 HTDCPG----HADYIKNMITGTSQMDGAILVVAATDGAM 186 (211)
Q Consensus 152 ~iDtPG----~~~~~~~~~~~~~~~d~~~~vvd~~~~~~ 186 (211)
.||||| |..+.+.......++|+++++-.+.++..
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s 79 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPES 79 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccc
Confidence 589999 55666778888899999999999988853
No 400
>KOG0098|consensus
Probab=94.09 E-value=0.27 Score=37.50 Aligned_cols=73 Identities=19% Similarity=0.142 Sum_probs=50.8
Q ss_pred eEEEeeeCCce--eEeecCCcccccHhHHhhhccccceEEEEEeccCCC-CcchHHHHHHHHHcCCCe--EEEEEeCC
Q psy9646 139 AHVEYATENRH--YSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQIGVTN--IVVFINKF 211 (211)
Q Consensus 139 ~~~~~~~~~~~--~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-~~~~~~~~~~~~~~~~~~--~i~~inK~ 211 (211)
....++..+++ +.+-||.||+.|-.-+-+-.+.+-++|||-|..... +..-..++.-++..+.+. ++++-||+
T Consensus 44 g~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKs 121 (216)
T KOG0098|consen 44 GARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKS 121 (216)
T ss_pred ceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchh
Confidence 34445555554 567999999999988888899999999999976443 233344556666654333 45567884
No 401
>KOG0395|consensus
Probab=94.03 E-value=0.23 Score=38.29 Aligned_cols=66 Identities=20% Similarity=0.148 Sum_probs=45.7
Q ss_pred eCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-CcchHHHHHHHH----HcCCCeEEEEEeCC
Q psy9646 145 TENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAK----QIGVTNIVVFINKF 211 (211)
Q Consensus 145 ~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-~~~~~~~~~~~~----~~~~~~~i~~inK~ 211 (211)
.+...+.++||+|.++|.......+..+|+-++|.+..+.- +.....+.+++. ...+| +++|.||+
T Consensus 48 ~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~P-ivlVGNK~ 118 (196)
T KOG0395|consen 48 GEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVP-IILVGNKC 118 (196)
T ss_pred CEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCC-EEEEEEcc
Confidence 34456679999999888877777788889999998876443 233333434432 23467 88999995
No 402
>KOG0076|consensus
Probab=93.99 E-value=0.071 Score=40.07 Aligned_cols=75 Identities=21% Similarity=0.199 Sum_probs=51.2
Q ss_pred eEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhc-cccceEEEEEeccCCC-C----cchHHHHHHHHHcCCCeEEEE
Q psy9646 134 ITINVAHVEYATENRHYSHTDCPGHADYIKNMITGT-SQMDGAILVVAATDGA-M----PQTREHLLLAKQIGVTNIVVF 207 (211)
Q Consensus 134 ~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~-~~~d~~~~vvd~~~~~-~----~~~~~~~~~~~~~~~~~~i~~ 207 (211)
.|+.+...+....+..+.|.|-.|++.. +.++..+ +.++++++++||.+.. . .+.+.+.+.=...|+| +++.
T Consensus 55 ~tvgLnig~i~v~~~~l~fwdlgGQe~l-rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p-~L~l 132 (197)
T KOG0076|consen 55 PTVGLNIGTIEVCNAPLSFWDLGGQESL-RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAP-VLVL 132 (197)
T ss_pred cccceeecceeeccceeEEEEcCChHHH-HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCc-hhhh
Confidence 3555556666667889999999998644 4555554 7899999999998632 2 2223344444557899 5577
Q ss_pred EeC
Q psy9646 208 INK 210 (211)
Q Consensus 208 inK 210 (211)
+||
T Consensus 133 ank 135 (197)
T KOG0076|consen 133 ANK 135 (197)
T ss_pred cch
Confidence 887
No 403
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.78 E-value=0.18 Score=43.64 Aligned_cols=62 Identities=24% Similarity=0.289 Sum_probs=37.7
Q ss_pred CCceeEeecCCcccc----cHhHHhhh--ccccceEEEEEeccCCCCcchHHHHHHHH-HcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHAD----YIKNMITG--TSQMDGAILVVAATDGAMPQTREHLLLAK-QIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~----~~~~~~~~--~~~~d~~~~vvd~~~~~~~~~~~~~~~~~-~~~~~~~i~~inK~ 211 (211)
.++.++|+||||... ++.++..- ....|-++||+||..|... ...++... ..++. -+++||+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~--g~IlTKl 249 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVG--SVIITKL 249 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCc--EEEEECc
Confidence 357899999999553 34443332 2346889999999766432 22333332 23444 3568985
No 404
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.76 E-value=0.17 Score=41.15 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=36.7
Q ss_pred CCceeEeecCCcccccHhH-------Hhhhcc-----ccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKN-------MITGTS-----QMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~-------~~~~~~-----~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.++++||||....... +..... ..|..++|+|+..+-... .......+..++.. +++||+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~f~~~~~~~g--~IlTKl 227 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL-EQAKVFNEAVGLTG--IILTKL 227 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH-HHHHHHHhhCCCCE--EEEEcc
Confidence 4567999999996542222 222222 389999999996442211 22333334456553 568885
No 405
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=93.76 E-value=0.041 Score=41.73 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=44.4
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC--CeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV--TNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~--~~~i~~inK~ 211 (211)
+.++++|||+..... +..++..+|.+++++++..--......+++.++..+. +.+-+++||+
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v 158 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRV 158 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEE
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeee
Confidence 679999999864433 6678889999999999754333455667777777773 3345688874
No 406
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=93.68 E-value=0.11 Score=42.44 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=30.8
Q ss_pred ccccceEEEEEeccCCC-C-cchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 169 TSQMDGAILVVAATDGA-M-PQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 169 ~~~~d~~~~vvd~~~~~-~-~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++.+|.+++|+|+.+.. . ....+++..+...++| +++++||+
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip-~iIVlNK~ 119 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIE-PVIVLTKA 119 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCC-EEEEEEHH
Confidence 46789999999998775 2 2223456666777888 67899995
No 407
>PRK00098 GTPase RsgA; Reviewed
Probab=93.61 E-value=0.15 Score=41.94 Aligned_cols=42 Identities=29% Similarity=0.491 Sum_probs=30.4
Q ss_pred ccccceEEEEEeccCCCCcc--hHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 169 TSQMDGAILVVAATDGAMPQ--TREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 169 ~~~~d~~~~vvd~~~~~~~~--~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++.+|.+++|+|+.+..... ..+++..+...++| +++++||+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip-~iIVlNK~ 121 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIK-PIIVLNKI 121 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEhH
Confidence 67899999999996543322 23455556778888 66899995
No 408
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=93.60 E-value=0.13 Score=40.72 Aligned_cols=62 Identities=8% Similarity=0.074 Sum_probs=38.4
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHH------HcCCCeEEEEEeC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAK------QIGVTNIVVFINK 210 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~------~~~~~~~i~~inK 210 (211)
+++.++||||||+.. ..+..++..+|.+|+.+.+...-.....+.++.+. +.+.| ..+++|.
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~-~~iv~~~ 149 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIP-TAILRQR 149 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEEEe
Confidence 457899999999764 44667888999998877664322222333332222 23566 4467775
No 409
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=93.11 E-value=0.28 Score=35.98 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=28.7
Q ss_pred hhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCe
Q psy9646 166 ITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTN 203 (211)
Q Consensus 166 ~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~ 203 (211)
...+..+|++++|+|+.++...++.++...+...+.|.
T Consensus 7 ~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~ 44 (156)
T cd01859 7 RRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKL 44 (156)
T ss_pred HHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcE
Confidence 34445699999999998887777777766666677773
No 410
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=93.07 E-value=0.24 Score=39.86 Aligned_cols=64 Identities=11% Similarity=0.005 Sum_probs=38.6
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHH----HcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAK----QIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~----~~~~~~~i~~inK~ 211 (211)
++-+++|||||.... ..+..++..||.+++++.+...-.....+.++.++ ..+++..-+++|++
T Consensus 115 ~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~ 182 (267)
T cd02032 115 EYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRT 182 (267)
T ss_pred cCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCC
Confidence 567999999986422 12445688999999998875332223333333332 33555334578874
No 411
>KOG2486|consensus
Probab=93.01 E-value=0.47 Score=38.53 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=47.3
Q ss_pred CCceeEeecCCccc----------ccHhHHhhhcc---ccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHA----------DYIKNMITGTS---QMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~----------~~~~~~~~~~~---~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
-+..+..+|-||.. ++.+-+.+-+. .-=.+.+++|+..++.+.+-..+..|.+.++| +.++.|||
T Consensus 181 v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP-~t~vfTK~ 258 (320)
T KOG2486|consen 181 VGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVP-MTSVFTKC 258 (320)
T ss_pred ccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCC-eEEeeehh
Confidence 45678999999922 22222222222 22356678999999999999999999999999 77899996
No 412
>KOG0082|consensus
Probab=92.68 E-value=0.5 Score=39.76 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=54.4
Q ss_pred ccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCC--CC---------cchHHHHHHHHH-
Q psy9646 131 ARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDG--AM---------PQTREHLLLAKQ- 198 (211)
Q Consensus 131 ~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~--~~---------~~~~~~~~~~~~- 198 (211)
.|--|.-+.-..|+.++..+.++|.+|++--.+.-..-..++++++|+++-.+- +. .++..+++-..+
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~ 257 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNN 257 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcC
Confidence 344455566677888889999999999886666666788999999999986522 11 123333333322
Q ss_pred ---cCCCeEEEEEeCC
Q psy9646 199 ---IGVTNIVVFINKF 211 (211)
Q Consensus 199 ---~~~~~~i~~inK~ 211 (211)
...+ +|+++||.
T Consensus 258 ~~F~~ts-iiLFLNK~ 272 (354)
T KOG0082|consen 258 KWFANTS-IILFLNKK 272 (354)
T ss_pred cccccCc-EEEEeecH
Confidence 2345 89999994
No 413
>KOG0095|consensus
Probab=92.41 E-value=1 Score=33.14 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=47.7
Q ss_pred EEeeeCCce--eEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 141 VEYATENRH--YSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 141 ~~~~~~~~~--~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
-+++.++.+ +-+-||.|+++|-.-+.+=.+.|++.+++-|....+. .--.+++...... ++- -|+|-||+
T Consensus 47 ktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvl-kilvgnk~ 122 (213)
T KOG0095|consen 47 KTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVL-KILVGNKI 122 (213)
T ss_pred EEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceE-EEeecccc
Confidence 345555544 5578999999999888888899999999999875543 3334444444332 222 35788985
No 414
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=92.06 E-value=0.17 Score=41.20 Aligned_cols=42 Identities=17% Similarity=0.087 Sum_probs=31.8
Q ss_pred CCccc-ccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHH
Q psy9646 155 CPGHA-DYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLA 196 (211)
Q Consensus 155 tPG~~-~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~ 196 (211)
-|||. +..+++...++.+|++++|+||..+.......+.+.+
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l 46 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR 46 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH
Confidence 48986 4678899999999999999999877655444444433
No 415
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.00 E-value=0.12 Score=43.18 Aligned_cols=32 Identities=9% Similarity=-0.024 Sum_probs=23.8
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEe
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVA 180 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd 180 (211)
.++.++|+||+|...-. ......||.++++++
T Consensus 147 ~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~ 178 (332)
T PRK09435 147 AGYDVILVETVGVGQSE---TAVAGMVDFFLLLQL 178 (332)
T ss_pred cCCCEEEEECCCCccch---hHHHHhCCEEEEEec
Confidence 45789999999987322 224667999999976
No 416
>smart00785 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU PUBMED:15112237.
Probab=91.96 E-value=1.6 Score=28.68 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=51.1
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecC------Cc-EEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPG------RG-TVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH 74 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~------~G-~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~ 74 (211)
.|+..|-..-+.|-...+....|.++++...+. .+ ..++|.|....++++..|.|...| ...|++|+...
T Consensus 4 nL~R~i~~~k~~~l~WR~~rpY~lad~~e~~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G---Dfqi~~I~~~~ 80 (83)
T smart00785 4 NLLRFLSVMKPRPLSWRDQHPYMLADRVEDITDEEDPKVDRTLVVYGYVRGTGLNANQLVHIPGLG---DFQISKIEALP 80 (83)
T ss_pred HHHHHHHhccCCCCcccCCCCeEEEEEeEecCCCCCCccCcEEEEEEEEcCCCCCCCCEEEeCCcC---CeEeeEEeecC
Confidence 466667664444556667777888998887542 23 458999999999999999987776 47788887644
No 417
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.81 E-value=0.47 Score=39.52 Aligned_cols=63 Identities=16% Similarity=0.240 Sum_probs=36.2
Q ss_pred CCceeEeecCCcccc----cHhH---Hhhhc-----cccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHAD----YIKN---MITGT-----SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~----~~~~---~~~~~-----~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.++++||||... .+.+ +...+ ...+..++|+||..+..... +........++. - +++||+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a~~f~~~~~~~-g-iIlTKl 269 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QAKAFHEAVGLT-G-IILTKL 269 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HHHHHHhhCCCC-E-EEEECC
Confidence 456799999999643 2222 22221 24678899999986543322 222223334544 2 568885
No 418
>PF08142 AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012948 This domain is the central domain of AARP2 (asparagine and aspartate rich protein 2). It is weakly similar to the GTP-binding domain of elongation factor TU []. PfAARP2 is an antigen from Plasmodium falciparum of 150 kDa, which is encoded by a unique gene on chromosome 1 []. The central region of Pfaarp2 contains blocks of repetitions encoding asparagine and aspartate residues. ; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=91.65 E-value=2.1 Score=28.33 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=52.6
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCC--------cE-EEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEe
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGR--------GT-VVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEM 72 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~--------G~-v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~ 72 (211)
.|+..|-..-+.|-...+....|.++++...+.. |+ .++|.|....++++..|.|..-| ...+++|+.
T Consensus 4 nl~R~i~~~k~~~i~WR~~r~y~lad~~e~~~~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G---DFqi~~I~~ 80 (85)
T PF08142_consen 4 NLLRFISVQKPRPISWRDQRPYMLADRVEFVPDPEDESENEDGTLKVYGYVRGSPLSVNQLVHIPGVG---DFQISKIES 80 (85)
T ss_pred HHHHHHHhCccCCCccccCCCeEEEEEEEecCCccccccCCceEEEEEEEEccccccCCCEEEeCCcC---CeEeeEeee
Confidence 4667777744445556677779999998887653 24 57999999999999999987766 467777776
Q ss_pred ccee
Q psy9646 73 FHKI 76 (211)
Q Consensus 73 ~~~~ 76 (211)
...+
T Consensus 81 ~~DP 84 (85)
T PF08142_consen 81 LPDP 84 (85)
T ss_pred cCCC
Confidence 5443
No 419
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=91.61 E-value=0.38 Score=37.12 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=38.0
Q ss_pred CCceeEeecCCcccccH-------hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYI-------KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~-------~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+++.+++|||||..... ++....+ ..+-+++|+++..+.... ..........++..+ +++|+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~~-~~~~~~~~~~~~~~l--IlTKl 150 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMGQEDL-EQALAFYEAFGIDGL--ILTKL 150 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGGGHHH-HHHHHHHHHSSTCEE--EEEST
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccChHHH-HHHHHHhhcccCceE--EEEee
Confidence 44679999999965432 2233333 567899999997764332 245455555677744 47874
No 420
>KOG0394|consensus
Probab=91.56 E-value=0.33 Score=36.93 Aligned_cols=60 Identities=15% Similarity=0.042 Sum_probs=40.8
Q ss_pred EeecCCcccccHhHHhhhccccceEEEEEeccCC--CCcchHHHHHHHHH------cCCCeEEEEEeCC
Q psy9646 151 SHTDCPGHADYIKNMITGTSQMDGAILVVAATDG--AMPQTREHLLLAKQ------IGVTNIVVFINKF 211 (211)
Q Consensus 151 ~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~--~~~~~~~~~~~~~~------~~~~~~i~~inK~ 211 (211)
-+=||.|+++|-+--..-.+.||+++++-|.... ....+..+-+++.. ...| +|++-||+
T Consensus 61 QiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FP-FVilGNKi 128 (210)
T KOG0394|consen 61 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFP-FVILGNKI 128 (210)
T ss_pred EEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCccc-EEEEcccc
Confidence 3579999999987777778999999999776533 22333333333333 2356 88889986
No 421
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=91.42 E-value=0.31 Score=38.93 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=31.1
Q ss_pred hccccceEEEEEeccCCCC--cchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 168 GTSQMDGAILVVAATDGAM--PQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 168 ~~~~~d~~~~vvd~~~~~~--~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
-++.+|.+++|.|+.+... ..-.+++..+...++| +++++||+
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~-~vIV~NK~ 77 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIE-PIIVLNKI 77 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECc
Confidence 4678899999999876542 2334455566667888 67899996
No 422
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=91.39 E-value=0.27 Score=40.78 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=41.4
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK 210 (211)
.+.++++|||+.... .+...+..+|.++++++....-.....++++.+...+.+ +-+++|+
T Consensus 204 ~~D~VIID~p~~~~~--~~~~~L~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~-~~lVv~~ 264 (322)
T TIGR03815 204 GGDLVVVDLPRRLTP--AAETALESADLVLVVVPADVRAVAAAARVCPELGRRNPD-LRLVVRG 264 (322)
T ss_pred cCCEEEEeCCCCCCH--HHHHHHHHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCC-eEEEEeC
Confidence 467899999987543 367788999999999986433334455566666655533 4455664
No 423
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.38 E-value=0.44 Score=39.26 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=34.7
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.++|+||||... .....+..+|.++++..... ..+....... -.+.| .++++||+
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~---~~el~~~~~~-l~~~~-~ivv~NK~ 182 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGT---GDDLQGIKAG-LMEIA-DIYVVNKA 182 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCc---cHHHHHHHHH-Hhhhc-cEEEEEcc
Confidence 467899999999652 22345667898888865321 1221221211 13566 46899996
No 424
>KOG0080|consensus
Probab=90.99 E-value=0.56 Score=34.97 Aligned_cols=79 Identities=15% Similarity=0.105 Sum_probs=52.7
Q ss_pred ceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHcCCCe---EEEEE
Q psy9646 133 GITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQIGVTN---IVVFI 208 (211)
Q Consensus 133 g~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~~~~~---~i~~i 208 (211)
|..+++..........++.+-||.|+++|-.-+-+=.+.|-++++|-|....-. ..-..+++.+..+...+ .++|-
T Consensus 45 GvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVg 124 (209)
T KOG0080|consen 45 GVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVG 124 (209)
T ss_pred eeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhc
Confidence 455566677777777889999999999998777777889999999999754322 11122333343332111 23577
Q ss_pred eCC
Q psy9646 209 NKF 211 (211)
Q Consensus 209 nK~ 211 (211)
|||
T Consensus 125 NKi 127 (209)
T KOG0080|consen 125 NKI 127 (209)
T ss_pred ccc
Confidence 875
No 425
>KOG1424|consensus
Probab=90.86 E-value=0.41 Score=42.01 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=40.5
Q ss_pred CCcccc--cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC-CeEEEEEeCC
Q psy9646 155 CPGHAD--YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV-TNIVVFINKF 211 (211)
Q Consensus 155 tPG~~~--~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~-~~~i~~inK~ 211 (211)
||--++ +-++.|+.++.+|+++.+|||+....--...+-...+...- +..++++||+
T Consensus 156 TpFErNLE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKa 215 (562)
T KOG1424|consen 156 TPFERNLEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKA 215 (562)
T ss_pred chhhhCHHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehh
Confidence 776443 46889999999999999999998876444444344444332 4467899995
No 426
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=90.80 E-value=0.72 Score=37.25 Aligned_cols=63 Identities=11% Similarity=0.167 Sum_probs=45.3
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK 210 (211)
.+-++++|||-.... ..+..-...+|.+++|+.+..--....++.++.++..+.+.+=+|+|+
T Consensus 212 ~yD~ViiD~pp~~~~-~d~~~~~~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 212 DYDVVIVDTPSAEHS-SDAQIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred cCCEEEEeCCCcccc-cHHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 467999999965332 233344567899999999866555666778888888888855557885
No 427
>KOG0077|consensus
Probab=90.78 E-value=0.28 Score=36.74 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=43.3
Q ss_pred eCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 145 TENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 145 ~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+-.+.-+|-.||..--+--..-+..+|++++++|+.+..- ...++.++.+.. ..+| +++..|||
T Consensus 61 Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp-~lilgnKI 131 (193)
T KOG0077|consen 61 IGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVP-FLILGNKI 131 (193)
T ss_pred ecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCc-ceeecccc
Confidence 445566778999996544444445567899999999975543 333444444422 4678 55778996
No 428
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=90.74 E-value=0.46 Score=32.16 Aligned_cols=45 Identities=13% Similarity=0.054 Sum_probs=30.7
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHH
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLL 194 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~ 194 (211)
+.++++|+|+... .....++..+|.+++++++...-.....+.++
T Consensus 40 ~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCC--HHHHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 6789999999743 33447788899999999875443333344433
No 429
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=90.28 E-value=0.61 Score=39.50 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=32.3
Q ss_pred ccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 160 DYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 160 ~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|.+.+..-...+|++++|+|+.+....-..++.+.+. +.| +++++||+
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~--~~p-iilV~NK~ 100 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG--GNP-VLLVGNKI 100 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC--CCC-EEEEEEch
Confidence 45554433346788999999997766554445544432 456 78999996
No 430
>PRK10818 cell division inhibitor MinD; Provisional
Probab=90.23 E-value=0.68 Score=37.25 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=34.6
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHH
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAK 197 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~ 197 (211)
.+.++++|+|+... .....++..+|.+++++++...-......+++.+.
T Consensus 113 ~yd~viiD~p~~~~--~~~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~ 161 (270)
T PRK10818 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILA 161 (270)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHhCCeEEEEcCCCchHHHhHHHHHHHHH
Confidence 46789999998754 34556788999999999986444444455555553
No 431
>KOG2423|consensus
Probab=90.22 E-value=0.77 Score=39.22 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=38.9
Q ss_pred hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC-CCeEEEEEeCC
Q psy9646 163 KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG-VTNIVVFINKF 211 (211)
Q Consensus 163 ~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~-~~~~i~~inK~ 211 (211)
.+.+.-+..+|+++-|+||++.+...-..+-+.++... -+++|+++||+
T Consensus 205 ~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKv 254 (572)
T KOG2423|consen 205 GELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKV 254 (572)
T ss_pred HHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeecc
Confidence 45677788899999999999998777666766676543 56689999996
No 432
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=90.14 E-value=0.56 Score=37.75 Aligned_cols=64 Identities=14% Similarity=0.031 Sum_probs=37.2
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHH----HcCCCeEEEEEeC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAK----QIGVTNIVVFINK 210 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~----~~~~~~~i~~inK 210 (211)
+++-+++|||||..... .+..++..||.+++++.+...-.......++.++ ..+++..-+++|+
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~ 183 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANR 183 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEec
Confidence 45779999999864222 2345678899999998764322222233333322 3455533357786
No 433
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=90.11 E-value=0.89 Score=39.56 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=26.5
Q ss_pred ceeEeecCCcccccHhH------HhhhccccceEEEEEeccCC
Q psy9646 148 RHYSHTDCPGHADYIKN------MITGTSQMDGAILVVAATDG 184 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~------~~~~~~~~d~~~~vvd~~~~ 184 (211)
+.++++||||......+ ...++..+|.+++|+|+..+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 36899999996654322 22445568999999999775
No 434
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=90.02 E-value=0.56 Score=39.06 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=28.4
Q ss_pred ceeEeecCCcc----cc---cHhHHhhhccccceEEEEEeccC
Q psy9646 148 RHYSHTDCPGH----AD---YIKNMITGTSQMDGAILVVAATD 183 (211)
Q Consensus 148 ~~~~~iDtPG~----~~---~~~~~~~~~~~~d~~~~vvd~~~ 183 (211)
.++.++||||. +. +....+..++.||++++|+|+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 46899999997 22 33456777999999999999963
No 435
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.01 E-value=0.71 Score=39.31 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=32.6
Q ss_pred CCceeEeecCCccc---ccHhHHhhhccc---cceEEEEEeccCCCCcchHHHHHHHH
Q psy9646 146 ENRHYSHTDCPGHA---DYIKNMITGTSQ---MDGAILVVAATDGAMPQTREHLLLAK 197 (211)
Q Consensus 146 ~~~~~~~iDtPG~~---~~~~~~~~~~~~---~d~~~~vvd~~~~~~~~~~~~~~~~~ 197 (211)
.++.+++|||||.. .+..+....+.. .+-.++|+++..+....++.+.....
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~ 271 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRS 271 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHH
Confidence 45689999999966 333344444433 34569999998776555544444433
No 436
>KOG0448|consensus
Probab=89.95 E-value=0.55 Score=42.57 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=41.3
Q ss_pred eeEeecCCccc---ccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeC
Q psy9646 149 HYSHTDCPGHA---DYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210 (211)
Q Consensus 149 ~~~~iDtPG~~---~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK 210 (211)
-+.++|.||.. .+-..+-.-..++|+.+||+.|..-.+-..+..+..+ ..+.|.++++.||
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~v-s~~KpniFIlnnk 270 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKV-SEEKPNIFILNNK 270 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHh-hccCCcEEEEech
Confidence 58899999954 2334444555789999999998666554444444444 4457877666776
No 437
>KOG0079|consensus
Probab=89.82 E-value=2 Score=31.60 Aligned_cols=72 Identities=18% Similarity=0.120 Sum_probs=46.6
Q ss_pred eEEEeeeCCc--eeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 139 AHVEYATENR--HYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 139 ~~~~~~~~~~--~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
...+...++. .+-+-||.|++.|-.-.-.=.+..+++++|-|...+.. ..-+++++.+... .+| -++|-||.
T Consensus 46 kirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~-~vLVGNK~ 122 (198)
T KOG0079|consen 46 KIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVP-KVLVGNKN 122 (198)
T ss_pred EEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcccc-ceecccCC
Confidence 3444444444 45678999998886444444456789999999876653 4556666666553 356 45888883
No 438
>KOG1490|consensus
Probab=89.75 E-value=0.53 Score=41.32 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=34.0
Q ss_pred ceeEeecCCcccc-----cH---hHHhhhcccc-ceEEEEEeccCCCC--cchHH-HHHHHHH--cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHAD-----YI---KNMITGTSQM-DGAILVVAATDGAM--PQTRE-HLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~-----~~---~~~~~~~~~~-d~~~~vvd~~~~~~--~~~~~-~~~~~~~--~~~~~~i~~inK~ 211 (211)
.++-.+||||.-+ .+ -+.+.|++.- -++|++.|-.+.-. ...+- ++.-.+. .+.| .|+|+||+
T Consensus 215 lrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~-~IlvlNK~ 291 (620)
T KOG1490|consen 215 LRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKV-TILVLNKI 291 (620)
T ss_pred eeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCc-eEEEeecc
Confidence 3567899999543 21 2344555544 46778888754332 22221 2222221 2445 77999996
No 439
>PRK14974 cell division protein FtsY; Provisional
Probab=89.72 E-value=0.9 Score=38.12 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=35.4
Q ss_pred CceeEeecCCcccc----cHhHHhhh--ccccceEEEEEeccCCCCcchHHHHHH-HHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHAD----YIKNMITG--TSQMDGAILVVAATDGAMPQTREHLLL-AKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~----~~~~~~~~--~~~~d~~~~vvd~~~~~~~~~~~~~~~-~~~~~~~~~i~~inK~ 211 (211)
++.+++|||||... ++.++..- ....|..++|+|+..|- ...+.++. ....++.. +++||+
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~g--iIlTKl 289 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGIDG--VILTKV 289 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCCE--EEEeee
Confidence 45699999999653 33332211 23468999999996653 22222222 23456663 467885
No 440
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=89.70 E-value=1.5 Score=40.10 Aligned_cols=68 Identities=13% Similarity=0.046 Sum_probs=37.4
Q ss_pred eeeCCceeEeecCCccccc----------HhHHhhhcc--ccceEEEEEeccCC-CCcchHHHHHHHHH-cC---CCeEE
Q psy9646 143 YATENRHYSHTDCPGHADY----------IKNMITGTS--QMDGAILVVAATDG-AMPQTREHLLLAKQ-IG---VTNIV 205 (211)
Q Consensus 143 ~~~~~~~~~~iDtPG~~~~----------~~~~~~~~~--~~d~~~~vvd~~~~-~~~~~~~~~~~~~~-~~---~~~~i 205 (211)
....+.++.+|||||..+. ++.+...++ ..|++|+|...... ...++...++.+.. .| .+..|
T Consensus 161 ~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tI 240 (763)
T TIGR00993 161 GLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAI 240 (763)
T ss_pred EEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEE
Confidence 3456788999999997753 122322333 47888888754322 22234445555532 22 33456
Q ss_pred EEEeC
Q psy9646 206 VFINK 210 (211)
Q Consensus 206 ~~inK 210 (211)
|+.+.
T Consensus 241 VVFTh 245 (763)
T TIGR00993 241 VTLTH 245 (763)
T ss_pred EEEeC
Confidence 66653
No 441
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=89.50 E-value=0.68 Score=37.98 Aligned_cols=64 Identities=9% Similarity=-0.036 Sum_probs=37.9
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHc----CCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQI----GVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~----~~~~~i~~inK~ 211 (211)
++.++++||||.-. ...+..++..||.+++++++...-......+++.++.. +.+..-+++|+.
T Consensus 115 ~yD~IiIDt~~~l~-~~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~ 182 (290)
T CHL00072 115 EYDIILFDVLGDVV-CGGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRT 182 (290)
T ss_pred cCCEEEEecCCcce-echhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCC
Confidence 46799999998621 12234567889999999886433223333444444332 344344677874
No 442
>KOG1145|consensus
Probab=89.43 E-value=0.57 Score=41.57 Aligned_cols=69 Identities=26% Similarity=0.180 Sum_probs=59.2
Q ss_pred CCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc-eecceecccCceeh
Q psy9646 16 RDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH-KILDEAQAGDQLGA 88 (211)
Q Consensus 16 ~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~-~~~~~a~~G~~v~~ 88 (211)
-+.++|+.-.|-+..-.+++|.+.+--|..|+++.|+-+...-+ =++|+.+.-.+ +++++|.|++.|.+
T Consensus 322 A~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G~~----w~KVr~l~D~nGk~i~~A~Ps~pv~V 391 (683)
T KOG1145|consen 322 ADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAGKS----WCKVRALFDHNGKPIDEATPSQPVEV 391 (683)
T ss_pred cCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEech----hhhhhhhhhcCCCCccccCCCCceEe
Confidence 34678899999999999999999999999999999998876655 36788887666 79999999999986
No 443
>PRK09602 translation-associated GTPase; Reviewed
Probab=89.34 E-value=0.55 Score=40.33 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=28.1
Q ss_pred ceeEeecCCccc-------ccHhHHhhhccccceEEEEEecc
Q psy9646 148 RHYSHTDCPGHA-------DYIKNMITGTSQMDGAILVVAAT 182 (211)
Q Consensus 148 ~~~~~iDtPG~~-------~~~~~~~~~~~~~d~~~~vvd~~ 182 (211)
.++.|+||||.. .+....+..++.+|++++|+|+.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 467899999953 24446777899999999999996
No 444
>COG1161 Predicted GTPases [General function prediction only]
Probab=89.28 E-value=0.62 Score=38.83 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=44.0
Q ss_pred eecCCccc-ccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 152 HTDCPGHA-DYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 152 ~iDtPG~~-~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+-+.|||. ++.++...-+..+|+++-|+||.+........+-+.... .+ .++++||+
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~--k~-~i~vlNK~ 71 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKE--KP-KLLVLNKA 71 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHcc--CC-cEEEEehh
Confidence 44569976 467888899999999999999999988777766665543 23 36889995
No 445
>PRK10037 cell division protein; Provisional
Probab=89.24 E-value=0.9 Score=36.21 Aligned_cols=58 Identities=19% Similarity=0.155 Sum_probs=37.6
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.+++||||+... ..+..++..||.+++++.+.. ..+++..+....+.+.+++|++
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~~------~~~i~~~~~~~~~~~~i~~n~~ 173 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVDA------NCHIRLHQQALPAGAHILINDL 173 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcCH------HHHHhhhccccCCCeEEEEecC
Confidence 457899999999854 457788899999999998631 1233444332222344567763
No 446
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=89.23 E-value=0.72 Score=37.07 Aligned_cols=65 Identities=15% Similarity=0.020 Sum_probs=37.3
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
.++.++++||||.-... .+..++..||.+++++.....-......+++.+.. .+++..-+++|++
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~ 182 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRS 182 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCC
Confidence 45789999999853211 12245788999999876532211223334333332 3455444678874
No 447
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=89.02 E-value=0.74 Score=35.70 Aligned_cols=65 Identities=12% Similarity=-0.018 Sum_probs=37.3
Q ss_pred CCceeEeecCCcccccHhHHhhhcc--ccceEEEEEeccCCCCcchHHHHHHHHHc----CCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTS--QMDGAILVVAATDGAMPQTREHLLLAKQI----GVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~--~~d~~~~vvd~~~~~~~~~~~~~~~~~~~----~~~~~i~~inK~ 211 (211)
+++.++++||||...... ....+. .||.++++++...--......+++.++.. +.+..-+++||+
T Consensus 115 ~~yD~ilID~~g~~~~~~-~~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~ 185 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGG-FAMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSR 185 (212)
T ss_pred cCCCEEEEecCCCceecc-cccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCC
Confidence 467899999988642111 112333 79999999986432222233344444443 444344678874
No 448
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=88.98 E-value=1.6 Score=37.21 Aligned_cols=77 Identities=17% Similarity=0.269 Sum_probs=49.0
Q ss_pred eEEeEeEEEeee-CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-----------cchHHHHHHHHH---
Q psy9646 134 ITINVAHVEYAT-ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-----------PQTREHLLLAKQ--- 198 (211)
Q Consensus 134 ~tv~~~~~~~~~-~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-----------~~~~~~~~~~~~--- 198 (211)
.|.-+.-..+.. .+..+.++|..|++.--+.-..-+.++++++|+++-.+-=. .++..+++.+..
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 344444556667 88899999999998666666666789999999999642111 122333333322
Q ss_pred -cCCCeEEEEEeCC
Q psy9646 199 -IGVTNIVVFINKF 211 (211)
Q Consensus 199 -~~~~~~i~~inK~ 211 (211)
.+.| +||++||+
T Consensus 301 ~~~~~-iil~lnK~ 313 (389)
T PF00503_consen 301 FKNTP-IILFLNKI 313 (389)
T ss_dssp GTTSE-EEEEEE-H
T ss_pred cccCc-eEEeeecH
Confidence 2345 89999994
No 449
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=88.46 E-value=1.1 Score=36.24 Aligned_cols=61 Identities=11% Similarity=0.237 Sum_probs=41.8
Q ss_pred eeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEE--EEEeCC
Q psy9646 149 HYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIV--VFINKF 211 (211)
Q Consensus 149 ~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i--~~inK~ 211 (211)
-++++|||+- +...+..++..+|..++|......--.+.-..++++...+.+... +++|++
T Consensus 114 D~iliD~~aG--l~~~~~~~~~~sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v 176 (262)
T COG0455 114 DYILIDTGAG--LSRDTLSFILSSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLNRV 176 (262)
T ss_pred CEEEEeCCCC--ccHHHHHHHHhcCcEEEEeCCCcchHHHHHHHHHHHHHcCCccccceEEEEec
Confidence 6899999875 445566777777999988875322223345567888888877433 788975
No 450
>PRK13796 GTPase YqeH; Provisional
Probab=87.91 E-value=1.3 Score=37.62 Aligned_cols=46 Identities=15% Similarity=0.022 Sum_probs=30.6
Q ss_pred hHHhhhccccc-eEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 163 KNMITGTSQMD-GAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 163 ~~~~~~~~~~d-~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..+...+..+| .+++|+|+.+........+.+.. .+.| +++++||+
T Consensus 60 ~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kp-viLViNK~ 106 (365)
T PRK13796 60 LKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNP-VLLVGNKA 106 (365)
T ss_pred HHHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCC-EEEEEEch
Confidence 34677777777 88999999876544433333322 2456 77899996
No 451
>PRK11670 antiporter inner membrane protein; Provisional
Probab=87.79 E-value=1.4 Score=37.50 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=40.8
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK 210 (211)
+++-++++|||-...-......++..+|.+++++....--.....+.++.+.+.+++.+-++.|+
T Consensus 214 ~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm 278 (369)
T PRK11670 214 PDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENM 278 (369)
T ss_pred ccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcC
Confidence 45679999997543333234455667899988886533222334455566667788854467886
No 452
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.07 E-value=1.6 Score=40.71 Aligned_cols=64 Identities=13% Similarity=-0.032 Sum_probs=44.6
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+.+++||||......... .-...+|.+++++....-......+.++.++..+.+..-+++|++
T Consensus 655 ~yD~IiID~pp~~~~~d~~-~l~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~ 718 (754)
T TIGR01005 655 YSDCVVVDVGTADPVRDMR-AAARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNML 718 (754)
T ss_pred hCCEEEEcCCCcchhHHHH-HhhhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 4678999999975543322 223468999999886544445667777888888877555788874
No 453
>KOG0083|consensus
Probab=86.20 E-value=0.87 Score=32.81 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=42.8
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-CcchHHHHHHHHHcC---CCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQIG---VTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-~~~~~~~~~~~~~~~---~~~~i~~inK~ 211 (211)
-++-+-||.|++.|-+-..+=.+++|+.+++-|..... +..-+.++...++.+ +. +.++-||+
T Consensus 47 vklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~-l~llgnk~ 113 (192)
T KOG0083|consen 47 VKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVA-LMLLGNKC 113 (192)
T ss_pred EEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHh-Hhhhcccc
Confidence 45667899999999988888889999999999975433 344444544444433 22 33455664
No 454
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=85.87 E-value=1.2 Score=35.12 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=25.5
Q ss_pred eeEeecCCcccccHhHHhhhccccceEEEEEecc
Q psy9646 149 HYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT 182 (211)
Q Consensus 149 ~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~ 182 (211)
.++++|||+. +......++..+|.+++++.+.
T Consensus 116 D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~ 147 (246)
T TIGR03371 116 DWVLIDVPRG--PSPITRQALAAADLVLVVVNAD 147 (246)
T ss_pred CEEEEECCCC--chHHHHHHHHhCCeEEEEeCCC
Confidence 6899999994 3345667778999999999874
No 455
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=85.86 E-value=2.7 Score=27.55 Aligned_cols=59 Identities=25% Similarity=0.374 Sum_probs=33.1
Q ss_pred eEeecC-CcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEe
Q psy9646 150 YSHTDC-PGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFIN 209 (211)
Q Consensus 150 ~~~iDt-PG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~in 209 (211)
+.++|+ ||-.|---++...+. .|.+++|--..+--....++.+..+++.++|.+=++-|
T Consensus 3 ~LiiD~PPGTgD~~l~~~~~~~-~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVEN 62 (81)
T PF10609_consen 3 YLIIDLPPGTGDEHLTLMQYLP-IDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVEN 62 (81)
T ss_dssp EEEEE--SCSSSHHHHHHHHH---SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEEC
T ss_pred EEEEeCCCCCCcHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 567888 576655445555555 67777766543333345577888999999994334444
No 456
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=85.29 E-value=4.7 Score=33.83 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=39.1
Q ss_pred eCCceeEeecCCcccc-------cHhHHhhhccccceEEEEEeccCCCC----cchHHHHHHHHH-----cCCCeEEEEE
Q psy9646 145 TENRHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATDGAM----PQTREHLLLAKQ-----IGVTNIVVFI 208 (211)
Q Consensus 145 ~~~~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~~~~----~~~~~~~~~~~~-----~~~~~~i~~i 208 (211)
.....+++-|.||.-+ +-...+.=++.+.+.+.|||....-. ..-+.+...++. .+.| .++|+
T Consensus 204 ~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~-~ivv~ 282 (369)
T COG0536 204 DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKP-RIVVL 282 (369)
T ss_pred cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCc-eEEEE
Confidence 4566799999999331 22223344456689999999864321 122223333333 3456 56899
Q ss_pred eCC
Q psy9646 209 NKF 211 (211)
Q Consensus 209 nK~ 211 (211)
|||
T Consensus 283 NKi 285 (369)
T COG0536 283 NKI 285 (369)
T ss_pred ecc
Confidence 997
No 457
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=85.24 E-value=3.9 Score=33.40 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=26.6
Q ss_pred ccceEEEEEecc-CCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 171 QMDGAILVVAAT-DGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 171 ~~d~~~~vvd~~-~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+|++|+.+++. .++.+.+.+.++.+.. .++ +|-+|.|.
T Consensus 113 RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vN-vIPvIaKa 152 (281)
T PF00735_consen 113 RVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVN-VIPVIAKA 152 (281)
T ss_dssp -EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSE-EEEEESTG
T ss_pred CcceEEEEEcCCCccchHHHHHHHHHhcc-ccc-EEeEEecc
Confidence 458999999975 6788888777777654 355 77788773
No 458
>KOG0086|consensus
Probab=84.74 E-value=4.4 Score=30.02 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=41.6
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHcCCCeE--EEEEeC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQIGVTNI--VVFINK 210 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~~~~~~--i~~inK 210 (211)
-++-+-||.|+++|-.-+.+=.+.|-++++|-|....-. ..-..++.-++.+.-|.| |++-||
T Consensus 58 vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnK 123 (214)
T KOG0086|consen 58 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNK 123 (214)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCCh
Confidence 345678999999998888888888999999999854322 222234444555554444 334455
No 459
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=84.43 E-value=3 Score=38.79 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=44.0
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+-+++||||-.-........+ ..+|.+++|+....--.....+.++.+...+.+.+=+|+|++
T Consensus 640 ~yD~IIIDtPP~~~~~Da~~la-~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~ 703 (726)
T PRK09841 640 HYDLVIVDTPPMLAVSDAAVVG-RSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGV 703 (726)
T ss_pred cCCEEEEeCCCccccchHHHHH-HhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCc
Confidence 4668999999765554443333 678999999876444445556677777788887555688974
No 460
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=84.40 E-value=2.5 Score=36.78 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=34.6
Q ss_pred CCceeEeecCCcccc----cHhHH--hhhccccceEEEEEeccCCCCcchHHHHHHHH-HcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHAD----YIKNM--ITGTSQMDGAILVVAATDGAMPQTREHLLLAK-QIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~----~~~~~--~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~-~~~~~~~i~~inK~ 211 (211)
.++.++++||||... .+.++ +......|-++||+|+..+ .....+++... ..++.. +++||+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~g--iIlTKl 249 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTG--VVLTKL 249 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCCCE--EEEeCc
Confidence 445689999999542 23222 1112346888999998643 22233333332 345553 457884
No 461
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=84.25 E-value=1.8 Score=34.66 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=23.6
Q ss_pred CCceeEeecCCcccccHhH-HhhhccccceEEEEEecc
Q psy9646 146 ENRHYSHTDCPGHADYIKN-MITGTSQMDGAILVVAAT 182 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~-~~~~~~~~d~~~~vvd~~ 182 (211)
+++.+++|||||....... ...++..||.+++++.+.
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~ 152 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE 152 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCc
Confidence 4578999999986422111 112233689999988864
No 462
>PRK10867 signal recognition particle protein; Provisional
Probab=84.00 E-value=2.4 Score=36.94 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=23.9
Q ss_pred CCceeEeecCCccc----ccHhHHhh--hccccceEEEEEeccC
Q psy9646 146 ENRHYSHTDCPGHA----DYIKNMIT--GTSQMDGAILVVAATD 183 (211)
Q Consensus 146 ~~~~~~~iDtPG~~----~~~~~~~~--~~~~~d~~~~vvd~~~ 183 (211)
.++.++++||||.. ..+.++.. .....|-+++|+|+..
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 34668999999954 23333211 1224677899999854
No 463
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=83.55 E-value=1.4 Score=34.35 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=35.6
Q ss_pred CCceeEeecCCcccccHhHHhhhccccce-------EEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDG-------AILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~-------~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++-++++|+||.-. .-+..++..+|. +++|.+...+...++...++.++..+.+..-+++|++
T Consensus 102 ~~~D~viIEg~gg~~--~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~l~~~~~~i~gvIlN~~ 172 (222)
T PRK00090 102 QQYDLVLVEGAGGLL--VPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEAIRARGLPLAGWVANGI 172 (222)
T ss_pred hhCCEEEEECCCcee--ccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEEccC
Confidence 346788999998421 011122333343 5667766444334444555666677877444577874
No 464
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=82.96 E-value=3.8 Score=30.18 Aligned_cols=62 Identities=23% Similarity=0.193 Sum_probs=38.2
Q ss_pred CCceeEeecCCcccc-------cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEe
Q psy9646 146 ENRHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFIN 209 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~in 209 (211)
.++-++++|+||... ........ -.+-+++|++...+.........+.+++.+++..-+++|
T Consensus 98 ~~~D~viid~~g~~~~~~~~~~~~~dl~~~--~~~~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 98 QKYDFVLVEGAGGLCVPITEEYTTADLIKL--LQLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred hcCCEEEEEcCCccccCCCCCCcHHHHHHH--hCCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 345688999998521 12222222 234578888876665555666677788888884444565
No 465
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.92 E-value=2.9 Score=37.32 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=34.4
Q ss_pred CCceeEeecCCcccccH----hHH--hhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYI----KNM--ITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~----~~~--~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.++||||||..... .++ +.+.. ....++|+++..+.... .+.++.....+. .-+++||+
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl-~eii~~f~~~~~--~gvILTKl 494 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDL-DEVVRRFAHAKP--QGVVLTKL 494 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHH-HHHHHHHHhhCC--eEEEEecC
Confidence 35689999999964321 111 12222 23567888886543332 234444444443 33678995
No 466
>KOG2485|consensus
Probab=82.64 E-value=2.4 Score=35.04 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=44.8
Q ss_pred ceeEeecCCccc-ccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHA-DYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~-~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++-..-+-|||- .-++++..-+..+|+++-|=||+-...+.-...-+.+. ..|+ |+|+||+
T Consensus 22 ~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~r-iiVlNK~ 83 (335)
T KOG2485|consen 22 YNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPR-IIVLNKM 83 (335)
T ss_pred cCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC--CCce-EEEEecc
Confidence 344556789985 34677888889999999999999888776655544443 4454 5789996
No 467
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=82.08 E-value=3.7 Score=32.88 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=43.4
Q ss_pred CceeEeecCCc--ccc-cHh--H----Hhhhccc--cceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPG--HAD-YIK--N----MITGTSQ--MDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG--~~~-~~~--~----~~~~~~~--~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++-++++|||- |.- ++. . +...+.+ .+.+++|+....-.....++.++.+...|++..-+++||+
T Consensus 124 ~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v 199 (254)
T cd00550 124 EYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQL 199 (254)
T ss_pred CCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecC
Confidence 56789999985 321 111 1 1223333 4577888887655556778888999999998656789985
No 468
>KOG0088|consensus
Probab=81.93 E-value=1.7 Score=32.35 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=39.0
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHH-HcC--CCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAK-QIG--VTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~-~~~--~~~~i~~inK~ 211 (211)
...++.+-||.|+++|-.-=--=..++|++++|-|..+.-.-|- +.+...++ -+| +. +++|-||+
T Consensus 60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~-l~IVGNKi 128 (218)
T KOG0088|consen 60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIE-LLIVGNKI 128 (218)
T ss_pred ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeE-EEEecCcc
Confidence 33467789999998874322223468899999999865432222 22222232 234 33 56678886
No 469
>KOG0074|consensus
Probab=81.88 E-value=2.5 Score=30.91 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=38.5
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC--cchHHHHHHHH---HcCCCeEEEEEeC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM--PQTREHLLLAK---QIGVTNIVVFINK 210 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~--~~~~~~~~~~~---~~~~~~~i~~inK 210 (211)
..++++-|..|+...-.--..=.+..|..++|+|+.+.-. ...+++.+++. ...+| +.++.||
T Consensus 61 ~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vp-vlIfank 128 (185)
T KOG0074|consen 61 TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVP-VLIFANK 128 (185)
T ss_pred cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccc-eeehhhh
Confidence 3788999999976432222222357899999999865432 23344455553 34577 4456665
No 470
>PRK11519 tyrosine kinase; Provisional
Probab=80.79 E-value=5.4 Score=37.12 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=44.9
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+-++++|||-.-...... .-...+|++++|+....-....-...++.+...+.+.+=+|+|++
T Consensus 635 ~yD~ViiDtpP~~~v~Da~-~l~~~~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v 698 (719)
T PRK11519 635 NYDLVLIDTPPILAVTDAA-IVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSI 698 (719)
T ss_pred cCCEEEEeCCCcccchHHH-HHHHHCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 4679999999765443333 334678999999987544445555667777888888554688975
No 471
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=80.68 E-value=4.5 Score=31.17 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=37.4
Q ss_pred eeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEe
Q psy9646 149 HYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFIN 209 (211)
Q Consensus 149 ~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~in 209 (211)
.++++|||...... .+..-+..+|.+++++.+..--.....+.++.++ +.+.+=+++|
T Consensus 150 D~IiiD~pp~~~~~-~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 150 RIIIIDTPPLLVFS-EARALARLVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CEEEEECCCCcchh-HHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 58999999755421 2222235689999999987666566677777776 4452323555
No 472
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=80.65 E-value=3 Score=35.72 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=32.5
Q ss_pred CceeEeecCCcccc----cHhHHhhhc--cccceEEEEEeccCCCCcch-HHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHAD----YIKNMITGT--SQMDGAILVVAATDGAMPQT-REHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~----~~~~~~~~~--~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++.+++|||||... .+.++..-. ...|..++|+++ +...++ .+++......++.. ++++|+
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsa--g~~~~d~~~i~~~f~~l~i~g--lI~TKL 352 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSS--GMKSADVMTILPKLAEIPIDG--FIITKM 352 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCC--cccHHHHHHHHHhcCcCCCCE--EEEEcc
Confidence 46789999999743 333333222 234676777776 222222 22333333455553 457774
No 473
>PRK12288 GTPase RsgA; Reviewed
Probab=79.27 E-value=4.9 Score=33.94 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=23.6
Q ss_pred cccceEEEEEeccCCCCc-chHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 170 SQMDGAILVVAATDGAMP-QTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 170 ~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.+|.+++|.+....... .-..++..+...++| .++++||+
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~-~VIVlNK~ 160 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLGIE-PLIVLNKI 160 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCC-EEEEEECc
Confidence 556777777665433321 223344456666777 45778885
No 474
>KOG1547|consensus
Probab=79.19 E-value=18 Score=29.08 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=42.3
Q ss_pred eEEeEeEEEeeeCC--ceeEeecCCccccc---------------------HhH-----Hhhhcc--ccceEEEEEecc-
Q psy9646 134 ITINVAHVEYATEN--RHYSHTDCPGHADY---------------------IKN-----MITGTS--QMDGAILVVAAT- 182 (211)
Q Consensus 134 ~tv~~~~~~~~~~~--~~~~~iDtPG~~~~---------------------~~~-----~~~~~~--~~d~~~~vvd~~- 182 (211)
..++...+..+.++ -+++.+||||..|+ +++ ...-+. .+.++++.+.+.
T Consensus 88 ~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG 167 (336)
T KOG1547|consen 88 TEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG 167 (336)
T ss_pred EEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC
Confidence 34444444444433 46889999996642 211 111122 346888877664
Q ss_pred CCCCcchHHHHHHHHHcCCCeEEEEEeC
Q psy9646 183 DGAMPQTREHLLLAKQIGVTNIVVFINK 210 (211)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~i~~inK 210 (211)
+.+.+.+.+.++.+.+. +. +|-||-|
T Consensus 168 hsLrplDieflkrLt~v-vN-vvPVIak 193 (336)
T KOG1547|consen 168 HSLRPLDIEFLKRLTEV-VN-VVPVIAK 193 (336)
T ss_pred CccCcccHHHHHHHhhh-he-eeeeEee
Confidence 66778888877776543 22 4445554
No 475
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=78.96 E-value=3.2 Score=35.09 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=47.9
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC--CCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG--VTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~--~~~~i~~inK~ 211 (211)
+-++++|-| +....-...-+..+|.+++|++-.-.-....++++..|++.+ -++.++++||.
T Consensus 218 ~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl~slR~ak~lld~l~~~r~~~~~p~lv~n~~ 281 (366)
T COG4963 218 FDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPSLASLRNAKELLDELKRLRPNDPKPILVLNRV 281 (366)
T ss_pred CCeEEEcCC--CccchHHHHHHhcCCeEEEEecccHHHHHHHHHHHHHHHHhCCCCCCceEEeeec
Confidence 557889999 555666677889999999999976555677888999998865 33356889984
No 476
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=78.93 E-value=2 Score=33.84 Aligned_cols=37 Identities=11% Similarity=-0.065 Sum_probs=28.0
Q ss_pred CCceeEeecCCcccc------cHhHHhhhccc--cceEEEEEecc
Q psy9646 146 ENRHYSHTDCPGHAD------YIKNMITGTSQ--MDGAILVVAAT 182 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~------~~~~~~~~~~~--~d~~~~vvd~~ 182 (211)
.+.+++++||||..+ ..+..+.++.. +|+.++.+++.
T Consensus 58 ~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 58 KEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWET 102 (224)
T ss_pred CcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCc
Confidence 457899999999654 34456677776 89999988863
No 477
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=78.58 E-value=5.2 Score=32.52 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=36.0
Q ss_pred CceeEeecCCcccc----cHhHHhhhc--cccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHAD----YIKNMITGT--SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~----~~~~~~~~~--~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++.++++||||... .++++..-+ ...|-.+||++|..... +..++++.-...++..+ +++|+
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~~~~~~~--I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHIDGI--VFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCCCCCCEE--EEEee
Confidence 46789999999652 344433322 24567899999854432 22334444445666643 46764
No 478
>KOG0780|consensus
Probab=78.47 E-value=4 Score=34.95 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=28.0
Q ss_pred CCceeEeecCCcccc----cHhHHhhhcc--ccceEEEEEeccCCCC
Q psy9646 146 ENRHYSHTDCPGHAD----YIKNMITGTS--QMDGAILVVAATDGAM 186 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~----~~~~~~~~~~--~~d~~~~vvd~~~~~~ 186 (211)
+++-++++||-|-|. +..++..-.. ..|-++||+||.-|..
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 567799999999553 3344333222 3599999999977643
No 479
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=77.24 E-value=7.6 Score=24.98 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=29.0
Q ss_pred eeEeecCCcccccHhH-HhhhccccceEEEEEeccCCCCcchH
Q psy9646 149 HYSHTDCPGHADYIKN-MITGTSQMDGAILVVAATDGAMPQTR 190 (211)
Q Consensus 149 ~~~~iDtPG~~~~~~~-~~~~~~~~d~~~~vvd~~~~~~~~~~ 190 (211)
.++++|+|+....... ....+..+|.++++++....-.....
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~ 77 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGAR 77 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHH
Confidence 7899999986543321 25677788999999987655444333
No 480
>KOG0072|consensus
Probab=77.23 E-value=5.9 Score=29.14 Aligned_cols=65 Identities=20% Similarity=0.177 Sum_probs=32.0
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCC--CCcchHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDG--AMPQTREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~--~~~~~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
++-.+.+-|-.|+.-+----..=.++.|.+++|||+.+. +.....++...+.+ ++.. ++++.||+
T Consensus 60 KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~-llv~anKq 129 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAK-LLVFANKQ 129 (182)
T ss_pred ccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCce-EEEEeccc
Confidence 344444455555433222222334677899999997533 22222223233322 3433 66788884
No 481
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=77.13 E-value=1.4 Score=32.81 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=14.1
Q ss_pred hcccceEEeEeEEEeeeCCceeEeecCCccccc
Q psy9646 129 EKARGITINVAHVEYATENRHYSHTDCPGHADY 161 (211)
Q Consensus 129 e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~ 161 (211)
.+++++|.......+ .....+|||||..+|
T Consensus 71 ~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 71 GRGKHTTTHRELFPL---PDGGYIIDTPGFRSF 100 (161)
T ss_dssp --------SEEEEEE---TTSEEEECSHHHHT-
T ss_pred CCCcccCCCeeEEec---CCCcEEEECCCCCcc
Confidence 445555555544444 235789999997765
No 482
>KOG0097|consensus
Probab=76.35 E-value=13 Score=27.11 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=42.3
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHcCCCe--EEEEEeC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQIGVTN--IVVFINK 210 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~~~~~--~i~~inK 210 (211)
-++-+-||.|+++|-.-..+=.+.+-++++|-|....-+ ..-..++.-++.+-.|. ++++-||
T Consensus 60 iklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignk 125 (215)
T KOG0097|consen 60 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNK 125 (215)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecch
Confidence 345678999999998777777788899999999765443 22233444555555454 3445566
No 483
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=76.32 E-value=5.2 Score=34.59 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=37.0
Q ss_pred CceeEeecCCcccc----cHhHHhhhc--cccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHAD----YIKNMITGT--SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~----~~~~~~~~~--~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++.++||||||... .+.++..-+ ...|..+||+||..+.. ...++++.....++..+ +++|+
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~~~idgl--I~TKL 387 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHIDGI--VFTKF 387 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcCCCCCEE--EEEcc
Confidence 35789999999543 344443333 23577889999854431 22445555555677644 46774
No 484
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=75.97 E-value=23 Score=30.05 Aligned_cols=75 Identities=19% Similarity=0.379 Sum_probs=44.2
Q ss_pred eEEeEeEEEeeeCCc--eeEeecCCcccccHhH------------------------Hhhh--c--cccceEEEEEec-c
Q psy9646 134 ITINVAHVEYATENR--HYSHTDCPGHADYIKN------------------------MITG--T--SQMDGAILVVAA-T 182 (211)
Q Consensus 134 ~tv~~~~~~~~~~~~--~~~~iDtPG~~~~~~~------------------------~~~~--~--~~~d~~~~vvd~-~ 182 (211)
+.+......+.-++. ++++|||||..+++.+ ..+. . ..++++|+.+.. .
T Consensus 66 ~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg 145 (373)
T COG5019 66 LEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG 145 (373)
T ss_pred eEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC
Confidence 334444444444443 5778999997654211 1122 1 235788887775 4
Q ss_pred CCCCcchHHHHHHHHHcCCCeEEEEEeC
Q psy9646 183 DGAMPQTREHLLLAKQIGVTNIVVFINK 210 (211)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~i~~inK 210 (211)
+|+.+.+-+..+.+.. .+. +|-||-|
T Consensus 146 h~l~~~DIe~Mk~ls~-~vN-lIPVI~K 171 (373)
T COG5019 146 HGLKPLDIEAMKRLSK-RVN-LIPVIAK 171 (373)
T ss_pred CCCCHHHHHHHHHHhc-ccC-eeeeeec
Confidence 8888888877666643 344 6667766
No 485
>KOG0096|consensus
Probab=75.92 E-value=11 Score=29.06 Aligned_cols=63 Identities=21% Similarity=0.041 Sum_probs=41.2
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc--chHHHHHHHHH-cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP--QTREHLLLAKQ-IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~--~~~~~~~~~~~-~~~~~~i~~inK~ 211 (211)
-.+..-||.|.+.+..---...-.+-+++++.|.....+- -.+.|-..++. .++| |+++-||+
T Consensus 59 irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiP-iv~cGNKv 124 (216)
T KOG0096|consen 59 IRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIP-IVLCGNKV 124 (216)
T ss_pred EEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCC-eeeeccce
Confidence 3566699999988765554445567899999997655542 22333333333 3468 88999985
No 486
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=75.17 E-value=7.8 Score=33.25 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=36.3
Q ss_pred CCceeEeecCCccccc----HhHHhhhccc--cc-eEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADY----IKNMITGTSQ--MD-GAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~----~~~~~~~~~~--~d-~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.++++||||.... +.++..-+.. .+ -.+||+||..+..... +++......+...+ +++|+
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~~~~~--I~TKl 322 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFSYKTV--IFTKL 322 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCCCCEE--EEEec
Confidence 4567999999995421 2333232222 23 5889999987743332 44455545566643 46774
No 487
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=75.06 E-value=5.6 Score=31.84 Aligned_cols=57 Identities=11% Similarity=-0.078 Sum_probs=31.9
Q ss_pred CCceeEeecCCcccccHhHH-hhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNM-ITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVT 202 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~-~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
.++.+++|||||........ ...+..+|.+++++.+..--.......++.++..+.+
T Consensus 112 ~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~~~~~~i~~~~~~ 169 (264)
T PRK13231 112 EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAANNIARGIKKLKGK 169 (264)
T ss_pred CCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHHHHHHHHHHcCCc
Confidence 45679999999864221110 0112578999998876433223344455555555444
No 488
>KOG0099|consensus
Probab=74.20 E-value=12 Score=30.44 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=37.3
Q ss_pred eEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccC
Q psy9646 134 ITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATD 183 (211)
Q Consensus 134 ~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~ 183 (211)
+|--+.-..|....-.+-..|..|+++--..-++...++-+++||+.+..
T Consensus 188 lTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSs 237 (379)
T KOG0099|consen 188 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSS 237 (379)
T ss_pred hccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccc
Confidence 33333344455555556678999999888888899999999999999863
No 489
>KOG0071|consensus
Probab=74.05 E-value=32 Score=25.25 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=31.1
Q ss_pred EEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCC
Q psy9646 140 HVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDG 184 (211)
Q Consensus 140 ~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~ 184 (211)
..++++.+-.++.-|..|+.+.-.--..=....-+.+||+|+...
T Consensus 53 vetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~ 97 (180)
T KOG0071|consen 53 VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADR 97 (180)
T ss_pred EEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccch
Confidence 345666778889999999765443333334566789999998655
No 490
>KOG3883|consensus
Probab=73.59 E-value=10 Score=28.22 Aligned_cols=63 Identities=24% Similarity=0.131 Sum_probs=38.1
Q ss_pred ceeEeecCCcccccHhHHh-hhccccceEEEEEeccCCCCcchHHHHHH----H-HHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMI-TGTSQMDGAILVVAATDGAMPQTREHLLL----A-KQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~-~~~~~~d~~~~vvd~~~~~~~~~~~~~~~----~-~~~~~~~~i~~inK~ 211 (211)
.++.|-||.|..+.-.+.- .-+..+|+-++|-+..+...-+--+.++. - ..-.+| |++..||.
T Consensus 60 E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvp-iVVLaN~r 128 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVP-IVVLANKR 128 (198)
T ss_pred heEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcccccccc-EEEEechh
Confidence 6789999999888743333 34467899999988654432222222111 1 113467 77778874
No 491
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=73.29 E-value=5.3 Score=34.09 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=39.5
Q ss_pred EeeeCC-ceeEeecCCccc-------ccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 142 EYATEN-RHYSHTDCPGHA-------DYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~-~~~~~iDtPG~~-------~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.|.++. -.+.+-|.||.. +|.+++ .+...|+.+++.+ ......+..+++.++..|.| +.+|-+|+
T Consensus 79 ~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~--~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~-fyfVRTKv 151 (376)
T PF05049_consen 79 PYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV--KFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKK-FYFVRTKV 151 (376)
T ss_dssp EEE-SS-TTEEEEEE--GGGSS--HHHHHHHT--TGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-E-EEEEE--H
T ss_pred eCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc--cccccCEEEEEeC--CCCchhhHHHHHHHHHcCCc-EEEEEecc
Confidence 344444 358899999954 244444 5778898777665 45567778889999999988 77888884
No 492
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=73.12 E-value=7.4 Score=29.51 Aligned_cols=54 Identities=17% Similarity=0.364 Sum_probs=40.6
Q ss_pred CCcccccHhHHh-hhccc-cceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEe
Q psy9646 155 CPGHADYIKNMI-TGTSQ-MDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFIN 209 (211)
Q Consensus 155 tPG~~~~~~~~~-~~~~~-~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~in 209 (211)
+|+..+|+...+ .+..+ ++.+++.+|+.-|.......+.+.+....+| ++.++|
T Consensus 11 ~~~~~~~l~~~l~~a~~~~~~~ivl~inspGG~v~~~~~I~~~l~~~~~p-vva~V~ 66 (178)
T cd07021 11 DPGLAAFVERALKEAKEEGADAVVLDIDTPGGRVDSALEIVDLILNSPIP-TIAYVN 66 (178)
T ss_pred CHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCCHHHHHHHHHHHHhCCCC-EEEEEC
Confidence 366666766544 33333 6899999999888888888899999888888 667776
No 493
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=72.47 E-value=3.1 Score=31.26 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=27.9
Q ss_pred chhhhhhhhccccccc-ccchhhcccceEEeEeEEEeeeCCceeEeecCCcc
Q psy9646 108 VLADKKLAKVKQYADI-DNAPEEKARGITINVAHVEYATENRHYSHTDCPGH 158 (211)
Q Consensus 108 ~~~~~~~~~f~~~i~~-~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~ 158 (211)
+.+..|++++...+.- ...+.....|.|.......+ +.++.++||||.
T Consensus 124 G~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 124 GFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 3455566665554432 22244455677776544443 347899999994
No 494
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=72.12 E-value=14 Score=32.13 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=27.7
Q ss_pred CCceeEeecCCccc----ccHhHH--hhhccccceEEEEEeccCCC
Q psy9646 146 ENRHYSHTDCPGHA----DYIKNM--ITGTSQMDGAILVVAATDGA 185 (211)
Q Consensus 146 ~~~~~~~iDtPG~~----~~~~~~--~~~~~~~d~~~~vvd~~~~~ 185 (211)
..+.++++||.|-+ +++.++ +......|=++||+||.-|-
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 44679999999944 344443 33445668999999986654
No 495
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.41 E-value=9.2 Score=33.24 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=35.7
Q ss_pred CCceeEeecCCccccc----H---hHHhhhcc--ccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADY----I---KNMITGTS--QMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~----~---~~~~~~~~--~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.+++|||||.... + ..+..... ...-.+||+||..+... ....++.-...++..+ +++|+
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~-~~~~~~~f~~~~~~gl--IlTKL 369 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH-TLTVLKAYESLNYRRI--LLTKL 369 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH-HHHHHHHhcCCCCCEE--EEEcc
Confidence 3567899999996422 2 22333222 22367889998766432 2334444455666643 46764
No 496
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=71.29 E-value=5.3 Score=32.19 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=23.2
Q ss_pred CceeEeecCCcccccHhH-HhhhccccceEEEEEeccC
Q psy9646 147 NRHYSHTDCPGHADYIKN-MITGTSQMDGAILVVAATD 183 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~-~~~~~~~~d~~~~vvd~~~ 183 (211)
++.+++|||||....... ...++..||.+++++.+..
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~ 152 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 152 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchH
Confidence 568999999985421110 1122346899999888753
No 497
>KOG3022|consensus
Probab=71.22 E-value=7.3 Score=31.76 Aligned_cols=59 Identities=20% Similarity=0.368 Sum_probs=36.2
Q ss_pred eeCCceeEeecCC-cccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCC
Q psy9646 144 ATENRHYSHTDCP-GHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVT 202 (211)
Q Consensus 144 ~~~~~~~~~iDtP-G~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
.|++--+.+|||| |..+---.+..-+..+|+|++|--..+--....++-+.+|++.++|
T Consensus 153 dwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ 212 (300)
T KOG3022|consen 153 DWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIP 212 (300)
T ss_pred CCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhhcCCc
Confidence 3455668899995 5443222333444555888777654333233445567899999999
No 498
>KOG1980|consensus
Probab=70.48 E-value=5.1 Score=36.23 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=42.0
Q ss_pred CCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEE
Q psy9646 155 CPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFI 208 (211)
Q Consensus 155 tPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~i 208 (211)
|| . .-.-.++.++..+|.++|+..+.+....-.+.++..++.+|+|.++.++
T Consensus 127 ~P-~-~n~~~~lD~~kv~D~~~f~~s~~~~~~e~ge~i~~~~~~qGi~s~v~~v 178 (754)
T KOG1980|consen 127 TP-K-TNFLNILDAAKVSDFVVFLLSAVEEDDEFGEQIIRALEAQGIPSYVSVV 178 (754)
T ss_pred cc-c-cchhhhhhhhhhcceeeeecchhhhhhHHHHHHHHHHhhcCCccceeee
Confidence 67 3 3334677899999999999999877777778899999999999776554
No 499
>KOG1707|consensus
Probab=70.01 E-value=7.3 Score=35.00 Aligned_cols=62 Identities=21% Similarity=0.127 Sum_probs=39.5
Q ss_pred eeEeecCCcccccHhHHhhhccccceEEEEEeccCCC--CcchHHHHHHHHH-----cCCCeEEEEEeCC
Q psy9646 149 HYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA--MPQTREHLLLAKQ-----IGVTNIVVFINKF 211 (211)
Q Consensus 149 ~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~--~~~~~~~~~~~~~-----~~~~~~i~~inK~ 211 (211)
...++||+--.+-.......++.||++.++-+..+.. ..-+..++=+.+. .++| +|+|-||+
T Consensus 57 pt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~P-VILvGNK~ 125 (625)
T KOG1707|consen 57 PTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETP-VILVGNKS 125 (625)
T ss_pred ceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCC-EEEEeecc
Confidence 3778999855554455667788999999887655432 2222233333333 3578 88999995
No 500
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=69.94 E-value=3.2 Score=30.32 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=27.9
Q ss_pred chhhhhhhhcccccccc-cchhhcccceEEeEeEEEeeeCCceeEeecCCcc
Q psy9646 108 VLADKKLAKVKQYADID-NAPEEKARGITINVAHVEYATENRHYSHTDCPGH 158 (211)
Q Consensus 108 ~~~~~~~~~f~~~i~~~-~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~ 158 (211)
+.+..|++.+...+.-. ..+....++.|.......+ +.++.++||||.
T Consensus 107 G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 107 GYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred ccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 34455666655444322 1234445667776655444 257999999994
Done!