Query psy9646
Match_columns 211
No_of_seqs 252 out of 2093
Neff 9.2
Searched_HMMs 29240
Date Sat Aug 17 01:00:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e1y_E Eukaryotic peptide chai 99.9 9.1E-24 3.1E-28 163.0 5.7 124 17-144 2-125 (204)
2 3j2k_7 ERF3, eukaryotic polype 99.9 7.4E-22 2.5E-26 168.8 13.2 138 2-144 226-363 (439)
3 1d2e_A Elongation factor TU (E 99.8 4.7E-21 1.6E-25 161.9 10.9 139 2-141 184-327 (397)
4 1f60_A Elongation factor EEF1A 99.8 2.8E-21 9.6E-26 166.0 9.6 140 2-144 225-365 (458)
5 1jny_A EF-1-alpha, elongation 99.8 4.6E-21 1.6E-25 163.8 9.2 141 2-145 214-354 (435)
6 2c78_A Elongation factor TU-A; 99.8 8.1E-21 2.8E-25 160.9 10.3 140 2-142 201-346 (405)
7 3p26_A Elongation factor 1 alp 99.8 7.9E-21 2.7E-25 164.3 9.4 142 3-146 243-401 (483)
8 3mca_A HBS1, elongation factor 99.8 1.6E-20 5.5E-25 165.7 11.5 140 2-145 386-526 (592)
9 3izq_1 HBS1P, elongation facto 99.8 2E-20 6.7E-25 165.6 8.3 143 2-146 376-535 (611)
10 3vqt_A RF-3, peptide chain rel 99.8 6.2E-20 2.1E-24 160.5 7.6 90 121-211 73-162 (548)
11 1r5b_A Eukaryotic peptide chai 99.8 2.7E-20 9.3E-25 160.3 4.9 135 2-142 255-390 (467)
12 3sjy_A Translation initiation 99.8 4E-19 1.4E-23 150.4 11.2 143 2-144 181-353 (403)
13 1s0u_A EIF-2-gamma, translatio 99.8 6.2E-19 2.1E-23 149.4 10.9 143 2-144 187-359 (408)
14 3j25_A Tetracycline resistance 99.8 5.9E-20 2E-24 163.5 2.6 89 122-211 41-129 (638)
15 3avx_A Elongation factor TS, e 99.8 9E-19 3.1E-23 161.7 9.0 122 2-124 475-596 (1289)
16 1kk1_A EIF2gamma; initiation o 99.8 6.1E-18 2.1E-22 143.4 12.1 143 2-144 189-361 (410)
17 4fn5_A EF-G 1, elongation fact 99.7 2E-18 6.7E-23 155.5 8.6 89 122-211 52-147 (709)
18 1zun_B Sulfate adenylate trans 99.7 2.2E-18 7.4E-23 147.2 7.6 135 3-143 226-360 (434)
19 2elf_A Protein translation elo 99.7 1.4E-18 4.7E-23 145.4 5.1 140 2-146 169-312 (370)
20 3j2k_7 ERF3, eukaryotic polype 99.7 2.3E-17 8E-22 140.9 9.6 100 112-211 59-165 (439)
21 1wb1_A Translation elongation 99.7 7.1E-19 2.4E-23 151.9 -1.2 141 2-145 178-322 (482)
22 1r5b_A Eukaryotic peptide chai 99.6 6.2E-16 2.1E-20 133.1 6.7 92 120-211 93-191 (467)
23 1d2e_A Elongation factor TU (E 99.6 3.4E-15 1.2E-19 126.0 9.7 90 122-211 40-129 (397)
24 1zun_B Sulfate adenylate trans 99.6 2.9E-15 9.9E-20 127.8 8.5 95 117-211 73-167 (434)
25 1jny_A EF-1-alpha, elongation 99.6 1.9E-15 6.5E-20 129.0 7.0 96 116-211 52-154 (435)
26 3p26_A Elongation factor 1 alp 99.6 3.8E-15 1.3E-19 128.7 9.0 99 113-211 76-181 (483)
27 1f60_A Elongation factor EEF1A 99.6 8E-16 2.7E-20 132.1 4.3 97 115-211 52-155 (458)
28 3mca_A HBS1, elongation factor 99.6 4.2E-16 1.4E-20 137.6 0.7 98 114-211 221-325 (592)
29 2c78_A Elongation factor TU-A; 99.6 8.3E-15 2.8E-19 123.9 8.5 90 122-211 49-138 (405)
30 2elf_A Protein translation elo 99.5 7.3E-15 2.5E-19 122.8 7.3 96 107-211 27-123 (370)
31 1kk1_A EIF2gamma; initiation o 99.5 6.8E-15 2.3E-19 124.7 7.0 102 110-211 19-147 (410)
32 1wb1_A Translation elongation 99.5 1.3E-14 4.5E-19 125.2 6.4 88 123-211 48-135 (482)
33 1s0u_A EIF-2-gamma, translatio 99.5 2.5E-14 8.7E-19 121.1 7.4 101 111-211 18-145 (408)
34 3izq_1 HBS1P, elongation facto 99.5 1.1E-14 3.9E-19 128.8 5.0 97 115-211 212-315 (611)
35 3avx_A Elongation factor TS, e 99.5 6.2E-14 2.1E-18 129.9 8.5 89 123-211 334-422 (1289)
36 3cb4_D GTP-binding protein LEP 99.5 1E-13 3.5E-18 122.1 8.7 90 121-211 39-133 (599)
37 2ywe_A GTP-binding protein LEP 99.5 8.3E-14 2.8E-18 122.6 7.7 89 122-211 42-135 (600)
38 3tr5_A RF-3, peptide chain rel 99.5 5.2E-14 1.8E-18 122.6 6.1 89 122-211 56-144 (528)
39 1zo1_I IF2, translation initia 99.5 1.5E-14 5.1E-19 124.9 2.6 102 109-211 12-113 (501)
40 2rdo_7 EF-G, elongation factor 99.4 4.2E-13 1.4E-17 120.6 9.4 89 122-211 49-144 (704)
41 2h5e_A Peptide chain release f 99.4 2.6E-13 9E-18 118.2 7.7 88 123-211 57-144 (529)
42 1xe1_A Hypothetical protein PF 99.4 3.3E-12 1.1E-16 87.7 10.7 82 19-106 32-113 (116)
43 3izy_P Translation initiation 99.3 9.9E-14 3.4E-18 120.7 -0.1 104 107-211 10-114 (537)
44 1dar_A EF-G, elongation factor 99.3 2.5E-12 8.6E-17 115.4 8.8 89 122-211 51-139 (691)
45 2xex_A Elongation factor G; GT 99.3 2.6E-12 8.9E-17 115.3 7.9 89 122-211 49-137 (693)
46 1n0u_A EF-2, elongation factor 99.3 1.9E-12 6.5E-17 118.4 6.4 89 122-211 56-160 (842)
47 2dy1_A Elongation factor G; tr 99.2 1.3E-11 4.3E-16 110.5 7.8 88 123-211 49-136 (665)
48 1g7s_A Translation initiation 99.2 3.6E-12 1.2E-16 112.3 4.1 62 149-211 71-132 (594)
49 3sjy_A Translation initiation 99.2 1.9E-11 6.4E-16 103.3 7.7 64 148-211 75-139 (403)
50 2ywe_A GTP-binding protein LEP 99.2 9.4E-11 3.2E-15 103.3 10.7 105 2-109 173-281 (600)
51 1wf3_A GTP-binding protein; GT 99.1 1.4E-10 4.6E-15 94.3 8.0 69 142-211 49-127 (301)
52 3cb4_D GTP-binding protein LEP 99.1 5.9E-10 2E-14 98.3 11.1 105 2-109 171-279 (599)
53 3iev_A GTP-binding protein ERA 99.1 1.2E-10 4E-15 95.0 6.1 100 111-211 20-132 (308)
54 2lkc_A Translation initiation 99.0 2.8E-10 9.6E-15 84.3 4.6 77 134-211 41-117 (178)
55 1ega_A Protein (GTP-binding pr 99.0 3.8E-10 1.3E-14 91.6 5.3 70 140-211 48-126 (301)
56 2rdo_7 EF-G, elongation factor 99.0 3.1E-09 1.1E-13 95.5 11.2 101 2-108 277-401 (704)
57 2h5e_A Peptide chain release f 98.9 9.1E-10 3.1E-14 95.9 6.7 101 2-108 267-383 (529)
58 1mky_A Probable GTP-binding pr 98.9 2.4E-09 8.3E-14 91.3 8.1 82 129-211 30-120 (439)
59 4dhe_A Probable GTP-binding pr 98.9 3.3E-09 1.1E-13 81.6 7.9 101 110-211 38-154 (223)
60 2dyk_A GTP-binding protein; GT 98.9 7E-09 2.4E-13 75.3 8.8 79 132-211 33-118 (161)
61 1dar_A EF-G, elongation factor 98.9 7.4E-09 2.5E-13 92.9 10.6 101 2-108 271-393 (691)
62 2hjg_A GTP-binding protein ENG 98.9 1.4E-09 4.9E-14 92.6 5.4 82 129-211 32-121 (436)
63 3izy_P Translation initiation 98.9 2.3E-09 7.8E-14 93.3 6.4 102 2-110 157-261 (537)
64 3qq5_A Small GTP-binding prote 98.9 3.7E-09 1.3E-13 89.6 7.5 98 111-211 44-150 (423)
65 2dy1_A Elongation factor G; tr 98.9 1.6E-09 5.6E-14 96.8 5.2 100 2-109 263-367 (665)
66 2hjg_A GTP-binding protein ENG 98.9 1.6E-09 5.3E-14 92.4 4.8 101 110-211 184-296 (436)
67 2xex_A Elongation factor G; GT 98.8 1.1E-08 3.7E-13 91.9 9.3 101 2-108 269-393 (693)
68 4dcu_A GTP-binding protein ENG 98.8 2.9E-09 1E-13 91.2 5.1 81 130-211 53-141 (456)
69 2xtp_A GTPase IMAP family memb 98.8 1.3E-08 4.4E-13 80.5 7.5 76 134-211 57-149 (260)
70 3i8s_A Ferrous iron transport 98.7 1.1E-08 3.7E-13 82.0 6.0 98 111-211 13-122 (274)
71 4dcu_A GTP-binding protein ENG 98.7 7.4E-09 2.5E-13 88.7 4.8 101 110-211 204-316 (456)
72 3tr5_A RF-3, peptide chain rel 98.7 1.8E-08 6.2E-13 87.7 7.2 99 2-106 266-380 (528)
73 3iby_A Ferrous iron transport 98.7 1.5E-08 5.3E-13 80.3 5.8 98 111-211 11-120 (256)
74 3lxw_A GTPase IMAP family memb 98.7 2.5E-08 8.7E-13 78.5 5.8 76 134-211 56-149 (247)
75 3clv_A RAB5 protein, putative; 98.6 4.9E-08 1.7E-12 73.4 6.2 63 148-211 93-157 (208)
76 2gj8_A MNME, tRNA modification 98.6 8.2E-08 2.8E-12 71.1 7.1 78 133-211 37-125 (172)
77 2efe_B Small GTP-binding prote 98.6 5.9E-08 2E-12 71.8 6.2 64 147-211 60-127 (181)
78 3k53_A Ferrous iron transport 98.6 7E-08 2.4E-12 76.9 6.8 98 111-211 13-119 (271)
79 3vqt_A RF-3, peptide chain rel 98.6 6.9E-08 2.4E-12 84.5 7.1 101 2-108 284-400 (548)
80 4bas_A ADP-ribosylation factor 98.6 9.8E-08 3.4E-12 71.8 7.1 72 139-211 54-137 (199)
81 3tw8_B RAS-related protein RAB 98.6 5.5E-08 1.9E-12 71.8 5.4 100 111-211 19-123 (181)
82 3a1s_A Iron(II) transport prot 98.6 8.7E-08 3E-12 76.0 6.9 98 111-211 15-120 (258)
83 1g7s_A Translation initiation 98.6 1.1E-07 3.7E-12 83.9 8.1 105 2-110 207-330 (594)
84 3bc1_A RAS-related protein RAB 98.6 1.2E-07 4.1E-12 70.7 7.3 63 148-211 70-137 (195)
85 3tkl_A RAS-related protein RAB 98.6 7.5E-08 2.6E-12 72.2 6.0 100 111-211 26-131 (196)
86 2bme_A RAB4A, RAS-related prot 98.5 9.7E-08 3.3E-12 71.0 5.9 100 111-211 20-125 (186)
87 2fu5_C RAS-related protein RAB 98.5 5.7E-08 2E-12 72.2 4.5 70 141-211 48-123 (183)
88 3cph_A RAS-related protein SEC 98.5 7.8E-08 2.7E-12 73.2 5.3 74 137-211 56-135 (213)
89 3gee_A MNME, tRNA modification 98.5 6.3E-08 2.2E-12 83.3 5.3 79 130-211 263-353 (476)
90 2hxs_A RAB-26, RAS-related pro 98.5 7.1E-08 2.4E-12 71.2 4.7 64 148-211 56-125 (178)
91 2h57_A ADP-ribosylation factor 98.5 1.3E-07 4.6E-12 70.7 6.0 73 138-211 57-136 (190)
92 1upt_A ARL1, ADP-ribosylation 98.5 1.5E-07 5.3E-12 68.8 6.2 71 140-211 43-118 (171)
93 3pqc_A Probable GTP-binding pr 98.5 2.6E-07 8.9E-12 69.0 7.4 64 147-211 67-143 (195)
94 1svi_A GTP-binding protein YSX 98.5 1.9E-07 6.4E-12 70.0 6.6 64 147-211 68-144 (195)
95 1ek0_A Protein (GTP-binding pr 98.5 1.9E-07 6.5E-12 68.1 6.3 65 146-211 50-118 (170)
96 4fn5_A EF-G 1, elongation fact 98.5 5.9E-08 2E-12 87.4 4.1 101 2-108 280-404 (709)
97 1ksh_A ARF-like protein 2; sma 98.5 1.6E-07 5.4E-12 70.0 5.8 71 140-211 54-129 (186)
98 1xzp_A Probable tRNA modificat 98.5 1.3E-07 4.3E-12 81.5 5.9 101 108-211 250-360 (482)
99 1r8s_A ADP-ribosylation factor 98.5 1.3E-07 4.4E-12 68.8 5.1 70 141-211 37-111 (164)
100 1wms_A RAB-9, RAB9, RAS-relate 98.5 3.8E-07 1.3E-11 67.1 7.7 71 140-211 46-126 (177)
101 2y8e_A RAB-protein 6, GH09086P 98.5 1.5E-07 5.3E-12 69.2 5.6 99 112-211 25-129 (179)
102 2il1_A RAB12; G-protein, GDP, 98.5 8.6E-08 3E-12 72.1 4.2 70 141-211 66-141 (192)
103 1jwy_B Dynamin A GTPase domain 98.5 3.5E-07 1.2E-11 74.2 7.8 65 146-211 129-208 (315)
104 2yc2_C IFT27, small RAB-relate 98.5 1.7E-07 5.7E-12 70.9 5.5 64 147-211 72-142 (208)
105 1g16_A RAS-related protein SEC 98.5 1.2E-07 4.3E-12 69.1 4.6 63 148-211 52-118 (170)
106 1zo1_I IF2, translation initia 98.5 3E-07 1E-11 79.4 7.6 100 2-108 156-258 (501)
107 2hup_A RAS-related protein RAB 98.5 3.4E-07 1.2E-11 69.4 6.9 70 141-211 69-144 (201)
108 1z06_A RAS-related protein RAB 98.5 1.4E-07 5E-12 70.5 4.7 63 148-211 69-137 (189)
109 3t1o_A Gliding protein MGLA; G 98.5 1.7E-07 5.7E-12 70.2 4.9 64 147-211 73-145 (198)
110 2gf9_A RAS-related protein RAB 98.4 1.9E-07 6.5E-12 69.9 5.2 68 143-211 66-137 (189)
111 1z2a_A RAS-related protein RAB 98.4 1.8E-07 6.3E-12 68.1 5.0 64 147-211 53-119 (168)
112 1r2q_A RAS-related protein RAB 98.4 2.7E-07 9.2E-12 67.2 5.8 68 143-211 50-121 (170)
113 2g6b_A RAS-related protein RAB 98.4 2.6E-07 9E-12 68.2 5.7 63 148-211 60-126 (180)
114 2h17_A ADP-ribosylation factor 98.4 1.1E-07 3.7E-12 70.8 3.6 69 142-211 59-132 (181)
115 1zbd_A Rabphilin-3A; G protein 98.4 3.2E-07 1.1E-11 69.3 6.3 65 146-211 55-123 (203)
116 2fg5_A RAB-22B, RAS-related pr 98.4 3.2E-07 1.1E-11 68.9 6.1 78 133-211 57-138 (192)
117 1zd9_A ADP-ribosylation factor 98.4 1.8E-07 6E-12 70.1 4.6 72 139-211 58-134 (188)
118 2qu8_A Putative nucleolar GTP- 98.4 7.6E-07 2.6E-11 68.8 8.3 78 133-211 61-152 (228)
119 2bcg_Y Protein YP2, GTP-bindin 98.4 2.4E-07 8.3E-12 70.2 5.4 71 140-211 47-123 (206)
120 1z0f_A RAB14, member RAS oncog 98.4 2E-07 6.7E-12 68.6 4.7 64 147-211 63-130 (179)
121 2p5s_A RAS and EF-hand domain 98.4 2.5E-07 8.5E-12 69.9 5.4 64 147-211 76-143 (199)
122 3o47_A ADP-ribosylation factor 98.4 1.4E-07 4.8E-12 77.4 4.1 76 135-211 196-276 (329)
123 3llu_A RAS-related GTP-binding 98.4 2.3E-07 7.8E-12 70.0 4.9 65 146-211 67-139 (196)
124 2qpt_A EH domain-containing pr 98.4 1.4E-07 4.7E-12 82.6 4.2 63 148-211 154-228 (550)
125 1zj6_A ADP-ribosylation factor 98.4 1.4E-07 4.9E-12 70.4 3.7 70 141-211 53-127 (187)
126 2ew1_A RAS-related protein RAB 98.4 5.7E-07 1.9E-11 68.4 7.0 70 141-211 66-141 (201)
127 2wji_A Ferrous iron transport 98.4 4.8E-07 1.6E-11 66.3 6.3 75 134-211 36-118 (165)
128 2a5j_A RAS-related protein RAB 98.4 2E-07 6.8E-12 69.9 4.3 63 148-211 70-136 (191)
129 3l0i_B RAS-related protein RAB 98.4 8.1E-08 2.8E-12 72.6 2.1 99 112-211 44-148 (199)
130 1vg8_A RAS-related protein RAB 98.4 2.9E-07 9.8E-12 69.7 5.0 63 148-211 57-127 (207)
131 2x77_A ADP-ribosylation factor 98.4 9E-08 3.1E-12 71.6 2.2 70 141-211 59-133 (189)
132 1ky3_A GTP-binding protein YPT 98.4 3.5E-07 1.2E-11 67.5 5.4 64 147-211 57-128 (182)
133 1z0j_A RAB-22, RAS-related pro 98.4 5.3E-07 1.8E-11 65.7 6.3 77 134-211 41-121 (170)
134 2wjg_A FEOB, ferrous iron tran 98.4 5.2E-07 1.8E-11 67.2 6.4 77 132-211 38-122 (188)
135 3cpj_B GTP-binding protein YPT 98.4 2E-07 6.9E-12 71.8 4.0 69 142-211 54-128 (223)
136 1m2o_B GTP-binding protein SAR 98.4 7E-07 2.4E-11 67.0 6.6 71 140-211 59-134 (190)
137 4djt_A GTP-binding nuclear pro 98.4 3.8E-07 1.3E-11 69.7 5.2 63 148-211 61-127 (218)
138 3geh_A MNME, tRNA modification 98.4 1.2E-07 4.2E-12 81.2 2.4 77 132-211 256-340 (462)
139 1z08_A RAS-related protein RAB 98.4 4E-07 1.4E-11 66.5 4.9 63 148-211 55-121 (170)
140 3dz8_A RAS-related protein RAB 98.4 2.7E-07 9.2E-12 69.2 3.9 72 139-211 63-138 (191)
141 2o52_A RAS-related protein RAB 98.3 2.7E-07 9.3E-12 69.8 3.9 63 148-211 74-140 (200)
142 3t5g_A GTP-binding protein RHE 98.3 4.6E-07 1.6E-11 67.0 4.8 63 148-211 54-121 (181)
143 3kkq_A RAS-related protein M-R 98.3 5.3E-07 1.8E-11 66.8 5.1 62 149-211 67-133 (183)
144 4gzl_A RAS-related C3 botulinu 98.3 5.1E-07 1.7E-11 68.6 5.0 63 148-211 78-144 (204)
145 3def_A T7I23.11 protein; chlor 98.3 5.6E-07 1.9E-11 71.3 5.4 79 132-211 68-161 (262)
146 2f7s_A C25KG, RAS-related prot 98.3 2.7E-07 9.2E-12 70.5 3.4 64 147-211 83-151 (217)
147 2oil_A CATX-8, RAS-related pro 98.3 5.1E-07 1.7E-11 67.6 4.7 70 141-211 67-140 (193)
148 3r7w_A Gtpase1, GTP-binding pr 98.3 8.6E-07 2.9E-11 72.0 6.4 80 131-211 34-125 (307)
149 3lxx_A GTPase IMAP family memb 98.3 7.9E-07 2.7E-11 69.3 6.0 77 133-211 63-155 (239)
150 3gj0_A GTP-binding nuclear pro 98.3 4.8E-07 1.6E-11 69.5 4.5 79 132-211 48-129 (221)
151 1h65_A Chloroplast outer envel 98.3 1.2E-06 4.2E-11 69.6 7.0 78 133-211 72-164 (270)
152 2b6h_A ADP-ribosylation factor 98.3 6.1E-07 2.1E-11 67.5 5.0 71 140-211 65-140 (192)
153 1x3s_A RAS-related protein RAB 98.3 8E-07 2.7E-11 66.4 5.5 71 140-211 56-131 (195)
154 1kao_A RAP2A; GTP-binding prot 98.3 7.7E-07 2.6E-11 64.5 5.2 63 148-211 51-118 (167)
155 1moz_A ARL1, ADP-ribosylation 98.3 5.6E-07 1.9E-11 66.6 4.4 70 141-211 55-129 (183)
156 3b1v_A Ferrous iron uptake tra 98.3 7.8E-07 2.7E-11 71.0 5.5 76 132-211 34-117 (272)
157 1mh1_A RAC1; GTP-binding, GTPa 98.3 6.4E-07 2.2E-11 66.3 4.7 63 148-211 53-119 (186)
158 2fh5_B SR-beta, signal recogni 98.3 1E-06 3.5E-11 67.1 5.9 63 147-211 53-125 (214)
159 1mky_A Probable GTP-binding pr 98.3 1E-06 3.5E-11 75.0 6.3 80 131-211 211-302 (439)
160 2erx_A GTP-binding protein DI- 98.3 1.2E-06 4.2E-11 63.8 6.0 64 147-211 50-119 (172)
161 2gco_A H9, RHO-related GTP-bin 98.3 5.4E-07 1.8E-11 68.2 3.9 63 148-211 73-139 (201)
162 2atx_A Small GTP binding prote 98.3 1.1E-06 3.6E-11 65.9 5.4 63 148-211 66-132 (194)
163 3reg_A RHO-like small GTPase; 98.3 1.1E-06 3.8E-11 65.9 5.6 63 148-211 71-137 (194)
164 1n0u_A EF-2, elongation factor 98.3 3.5E-06 1.2E-10 77.3 9.6 87 2-88 333-456 (842)
165 1f6b_A SAR1; gtpases, N-termin 98.2 1.3E-06 4.4E-11 66.1 5.4 70 141-211 62-136 (198)
166 1fzq_A ADP-ribosylation factor 98.2 2.1E-06 7.3E-11 63.8 6.3 69 142-211 54-127 (181)
167 1c1y_A RAS-related protein RAP 98.2 1.2E-06 4.1E-11 63.6 4.7 65 146-211 49-118 (167)
168 2fn4_A P23, RAS-related protei 98.2 1.1E-06 3.8E-11 64.7 4.5 63 148-211 57-124 (181)
169 2fv8_A H6, RHO-related GTP-bin 98.2 1.5E-06 5.1E-11 66.0 5.3 63 148-211 73-139 (207)
170 1u8z_A RAS-related protein RAL 98.2 9.7E-07 3.3E-11 64.0 3.8 63 148-211 52-119 (168)
171 3t5d_A Septin-7; GTP-binding p 98.2 2.7E-06 9.1E-11 67.8 6.7 38 172-211 116-154 (274)
172 3lvq_E ARF-GAP with SH3 domain 98.2 1.2E-06 4.2E-11 75.5 4.9 76 135-211 353-433 (497)
173 2ce2_X GTPase HRAS; signaling 98.2 1.9E-06 6.4E-11 62.2 5.0 64 147-211 50-118 (166)
174 3oes_A GTPase rhebl1; small GT 98.2 7.8E-07 2.7E-11 67.2 2.9 67 144-211 68-139 (201)
175 2a9k_A RAS-related protein RAL 98.1 1.4E-06 4.9E-11 64.4 4.0 63 148-211 66-133 (187)
176 2nzj_A GTP-binding protein REM 98.1 3.3E-06 1.1E-10 61.8 5.6 63 148-211 52-121 (175)
177 3q3j_B RHO-related GTP-binding 98.1 3.2E-06 1.1E-10 64.7 5.5 66 145-211 72-141 (214)
178 3bwd_D RAC-like GTP-binding pr 98.1 2E-06 7E-11 63.4 4.2 64 147-211 55-122 (182)
179 2j0v_A RAC-like GTP-binding pr 98.1 2.1E-06 7.1E-11 65.3 4.3 63 148-211 57-123 (212)
180 1m7b_A RND3/RHOE small GTP-bin 98.1 2.6E-06 9E-11 63.3 4.7 64 147-211 54-121 (184)
181 3q72_A GTP-binding protein RAD 98.1 3.4E-06 1.1E-10 61.3 5.0 65 146-211 47-116 (166)
182 2bov_A RAla, RAS-related prote 98.1 5.3E-06 1.8E-10 62.4 6.3 63 148-211 62-129 (206)
183 2q3h_A RAS homolog gene family 98.1 3.7E-06 1.3E-10 63.3 5.3 63 148-211 68-134 (201)
184 4dsu_A GTPase KRAS, isoform 2B 98.1 3.3E-06 1.1E-10 62.5 4.9 63 148-211 52-119 (189)
185 1nrj_B SR-beta, signal recogni 98.1 4.9E-06 1.7E-10 63.5 6.0 65 146-211 53-130 (218)
186 2aka_B Dynamin-1; fusion prote 98.1 9E-06 3.1E-10 65.1 7.6 64 147-211 124-202 (299)
187 1d1n_A Initiation factor 2; be 98.1 2.4E-06 8.3E-11 57.0 3.3 81 23-105 8-89 (99)
188 3j25_A Tetracycline resistance 98.1 9.5E-08 3.2E-12 85.1 -4.7 85 2-89 228-316 (638)
189 3zvr_A Dynamin-1; hydrolase, D 98.1 1.1E-05 3.8E-10 72.8 8.5 64 147-211 149-227 (772)
190 2j1l_A RHO-related GTP-binding 98.1 5E-06 1.7E-10 63.5 5.4 63 148-211 82-148 (214)
191 3con_A GTPase NRAS; structural 98.1 6.9E-06 2.3E-10 61.1 6.1 63 148-211 69-136 (190)
192 1gwn_A RHO-related GTP-binding 98.0 3.7E-06 1.3E-10 64.0 4.6 64 147-211 75-142 (205)
193 2atv_A RERG, RAS-like estrogen 98.0 4.9E-06 1.7E-10 62.4 4.8 63 147-211 75-142 (196)
194 3q85_A GTP-binding protein REM 98.0 7.3E-06 2.5E-10 59.6 5.5 64 147-211 50-119 (169)
195 1lnz_A SPO0B-associated GTP-bi 98.0 2.3E-06 8E-11 70.5 3.0 101 110-211 167-284 (342)
196 2gf0_A GTP-binding protein DI- 98.0 6.5E-06 2.2E-10 61.6 5.1 64 147-211 55-124 (199)
197 3th5_A RAS-related C3 botulinu 97.2 8.4E-07 2.9E-11 67.2 0.0 63 148-211 78-144 (204)
198 2wkq_A NPH1-1, RAS-related C3 98.0 7.1E-06 2.4E-10 66.5 5.2 68 143-211 196-269 (332)
199 2crv_A IF-2MT, translation ini 98.0 2E-05 6.8E-10 54.4 6.5 83 22-106 11-98 (120)
200 2cxx_A Probable GTP-binding pr 98.0 1.1E-05 3.8E-10 59.8 5.8 62 149-211 45-132 (190)
201 2j69_A Bacterial dynamin-like 98.0 6.4E-06 2.2E-10 74.0 5.1 63 148-211 174-240 (695)
202 1pui_A ENGB, probable GTP-bind 97.9 5E-05 1.7E-09 57.4 7.9 110 98-211 23-147 (210)
203 3ihw_A Centg3; RAS, centaurin, 97.9 1.3E-05 4.4E-10 59.7 4.5 58 148-211 67-129 (184)
204 3t34_A Dynamin-related protein 97.8 2.7E-05 9.1E-10 64.4 6.4 65 146-211 134-213 (360)
205 2qtf_A Protein HFLX, GTP-bindi 97.8 4E-05 1.4E-09 63.6 6.7 101 110-211 188-302 (364)
206 3c5c_A RAS-like protein 12; GD 97.8 2E-05 6.8E-10 58.8 4.4 63 147-211 68-137 (187)
207 1wxq_A GTP-binding protein; st 97.8 2.2E-05 7.5E-10 65.9 4.9 37 148-184 71-114 (397)
208 2ged_A SR-beta, signal recogni 97.7 1.8E-05 6.2E-10 58.9 3.5 65 146-211 89-166 (193)
209 2iwr_A Centaurin gamma 1; ANK 97.7 3.6E-05 1.2E-09 56.5 4.8 58 148-211 54-118 (178)
210 2x2e_A Dynamin-1; nitration, h 97.7 9.6E-05 3.3E-09 60.9 7.7 64 147-211 129-207 (353)
211 2e87_A Hypothetical protein PH 97.7 0.00011 3.7E-09 60.7 8.0 77 134-211 200-290 (357)
212 3cbq_A GTP-binding protein REM 97.7 0.0001 3.4E-09 55.4 6.7 63 148-211 72-140 (195)
213 4a9a_A Ribosome-interacting GT 97.7 5.2E-05 1.8E-09 63.1 5.4 101 109-211 80-192 (376)
214 1yrb_A ATP(GTP)binding protein 97.6 9.9E-05 3.4E-09 57.8 6.3 62 148-211 109-181 (262)
215 3dpu_A RAB family protein; roc 97.6 7.4E-05 2.5E-09 65.1 5.9 62 147-211 97-160 (535)
216 1cip_A Protein (guanine nucleo 97.5 0.00016 5.4E-09 59.8 6.4 76 135-211 180-270 (353)
217 2zej_A Dardarin, leucine-rich 97.5 6.9E-05 2.3E-09 55.6 3.6 65 146-211 54-122 (184)
218 2qag_A Septin-2, protein NEDD5 97.4 0.00017 5.9E-09 59.7 5.8 37 173-211 147-184 (361)
219 4dkx_A RAS-related protein RAB 97.4 0.00024 8.2E-09 54.5 5.9 63 148-211 62-128 (216)
220 1zcb_A G alpha I/13; GTP-bindi 97.4 0.00013 4.5E-09 60.4 4.4 76 135-211 188-278 (362)
221 2p67_A LAO/AO transport system 97.3 4.7E-05 1.6E-09 62.6 1.3 59 145-211 146-204 (341)
222 1udx_A The GTP-binding protein 97.3 0.00064 2.2E-08 57.3 7.5 113 98-211 154-279 (416)
223 2f9l_A RAB11B, member RAS onco 97.2 0.00042 1.4E-08 51.9 5.4 69 142-211 46-120 (199)
224 1puj_A YLQF, conserved hypothe 97.2 0.00036 1.2E-08 55.8 5.2 56 153-211 4-60 (282)
225 4fid_A G protein alpha subunit 97.1 0.00073 2.5E-08 55.4 6.1 77 134-211 147-238 (340)
226 2j37_W Signal recognition part 97.0 0.00055 1.9E-08 59.1 4.9 63 146-211 182-250 (504)
227 3r7w_B Gtpase2, GTP-binding pr 97.0 0.00069 2.3E-08 55.3 5.2 63 147-211 45-116 (331)
228 1azs_C GS-alpha; complex (lyas 97.0 0.0011 3.6E-08 55.7 6.3 76 135-211 204-294 (402)
229 3p32_A Probable GTPase RV1496/ 96.9 0.00043 1.5E-08 57.1 2.6 58 146-211 170-227 (355)
230 3ohm_A Guanine nucleotide-bind 96.8 0.0037 1.3E-07 51.0 7.2 77 134-211 153-244 (327)
231 1oix_A RAS-related protein RAB 96.6 0.0024 8.4E-08 47.4 5.0 71 140-211 68-144 (191)
232 2xtz_A Guanine nucleotide-bind 96.5 0.0028 9.5E-08 52.3 5.1 64 147-211 182-260 (354)
233 2g3y_A GTP-binding protein GEM 96.5 0.0044 1.5E-07 47.2 5.7 63 148-211 87-155 (211)
234 1j8m_F SRP54, signal recogniti 96.4 0.0079 2.7E-07 48.3 6.8 63 146-211 179-249 (297)
235 1u0l_A Probable GTPase ENGC; p 96.3 0.0035 1.2E-07 50.4 4.4 60 149-211 64-125 (301)
236 2v3c_C SRP54, signal recogniti 96.2 0.014 4.7E-07 49.4 7.6 63 146-211 179-248 (432)
237 2www_A Methylmalonic aciduria 96.1 0.0055 1.9E-07 50.3 4.6 58 146-211 165-222 (349)
238 4dzz_A Plasmid partitioning pr 96.0 0.011 3.8E-07 44.0 5.5 61 147-211 75-140 (206)
239 2ph1_A Nucleotide-binding prot 95.8 0.018 6.2E-07 45.0 6.3 66 146-211 127-192 (262)
240 2cjw_A GTP-binding protein GEM 95.8 0.011 3.7E-07 43.9 4.6 63 148-211 56-124 (192)
241 3kjh_A CO dehydrogenase/acetyl 95.7 0.0042 1.4E-07 47.8 2.3 64 146-211 130-193 (254)
242 3c5h_A Glucocorticoid receptor 95.7 0.0067 2.3E-07 47.4 3.3 40 171-211 162-208 (255)
243 1g3q_A MIND ATPase, cell divis 95.5 0.0094 3.2E-07 45.6 3.4 63 147-211 111-173 (237)
244 2wsm_A Hydrogenase expression/ 95.4 0.007 2.4E-07 45.7 2.5 58 146-211 107-164 (221)
245 2ohf_A Protein OLA1, GTP-bindi 95.4 0.0071 2.4E-07 50.6 2.5 36 148-183 86-128 (396)
246 1jal_A YCHF protein; nucleotid 95.3 0.0069 2.4E-07 50.1 2.2 36 148-183 66-108 (363)
247 2yv5_A YJEQ protein; hydrolase 95.2 0.013 4.4E-07 47.1 3.6 44 167-211 75-120 (302)
248 2xxa_A Signal recognition part 95.2 0.04 1.4E-06 46.6 6.7 62 146-211 182-250 (433)
249 1hyq_A MIND, cell division inh 95.0 0.013 4.3E-07 45.7 2.9 64 146-211 109-172 (263)
250 3ec1_A YQEH GTPase; atnos1, at 95.0 0.0008 2.7E-08 55.8 -4.3 62 149-211 213-284 (369)
251 3dm5_A SRP54, signal recogniti 94.9 0.054 1.8E-06 45.9 6.7 63 146-211 181-249 (443)
252 3cio_A ETK, tyrosine-protein k 94.5 0.078 2.7E-06 42.4 6.5 63 148-211 214-276 (299)
253 3kl4_A SRP54, signal recogniti 94.5 0.051 1.7E-06 45.9 5.5 62 146-211 178-248 (433)
254 3la6_A Tyrosine-protein kinase 94.5 0.052 1.8E-06 43.2 5.2 63 148-211 202-264 (286)
255 3h2y_A GTPase family protein; 94.4 0.0022 7.5E-08 53.2 -3.2 62 149-211 212-283 (368)
256 3cwq_A Para family chromosome 94.2 0.025 8.6E-07 42.7 2.8 63 146-211 66-130 (209)
257 3ea0_A ATPase, para family; al 94.2 0.033 1.1E-06 42.6 3.5 63 147-211 118-182 (245)
258 3k9g_A PF-32 protein; ssgcid, 94.0 0.056 1.9E-06 42.1 4.5 63 146-211 143-207 (267)
259 2qag_C Septin-7; cell cycle, c 94.0 0.043 1.5E-06 46.2 4.0 38 172-211 139-177 (418)
260 2qag_B Septin-6, protein NEDD5 93.7 0.1 3.4E-06 44.0 5.6 36 174-211 151-186 (427)
261 3bfv_A CAPA1, CAPB2, membrane 93.6 0.067 2.3E-06 42.2 4.3 63 148-211 192-254 (271)
262 2qm8_A GTPase/ATPase; G protei 93.3 0.048 1.7E-06 44.4 3.0 37 145-184 145-181 (337)
263 1t9h_A YLOQ, probable GTPase E 93.0 0.12 4.1E-06 41.6 4.9 43 168-211 83-127 (307)
264 3q9l_A Septum site-determining 92.6 0.047 1.6E-06 42.2 1.9 63 147-211 113-183 (260)
265 2oze_A ORF delta'; para, walke 92.5 0.11 3.8E-06 41.1 4.1 63 147-211 154-222 (298)
266 1ni3_A YCHF GTPase, YCHF GTP-b 92.4 0.1 3.4E-06 43.6 3.8 36 148-183 85-127 (392)
267 2dby_A GTP-binding protein; GD 92.0 0.13 4.4E-06 42.5 3.9 37 147-183 68-111 (368)
268 1wcv_1 SOJ, segregation protei 91.8 0.17 5.7E-06 39.2 4.3 64 146-211 110-179 (257)
269 4he6_A Peptidase family U32; u 91.6 0.092 3.2E-06 34.0 2.2 56 45-104 27-85 (89)
270 3end_A Light-independent proto 91.4 0.15 5.3E-06 40.5 3.7 65 146-211 155-223 (307)
271 2ffh_A Protein (FFH); SRP54, s 90.9 0.48 1.7E-05 39.9 6.4 62 146-211 179-247 (425)
272 1zu4_A FTSY; GTPase, signal re 90.2 0.33 1.1E-05 39.2 4.7 39 146-184 190-240 (320)
273 3ec1_A YQEH GTPase; atnos1, at 89.7 0.13 4.6E-06 42.3 2.0 51 158-211 58-108 (369)
274 1ls1_A Signal recognition part 87.0 1.1 3.7E-05 35.6 5.7 39 146-184 179-223 (295)
275 1f5n_A Interferon-induced guan 86.7 0.14 4.7E-06 45.1 0.2 52 146-197 89-146 (592)
276 1byi_A Dethiobiotin synthase; 86.5 1.1 3.6E-05 33.6 5.1 66 146-211 107-177 (224)
277 3l82_B F-box only protein 4; T 86.4 1.2 4E-05 34.0 5.1 40 170-210 124-171 (227)
278 2afh_E Nitrogenase iron protei 86.2 0.48 1.6E-05 37.2 3.1 66 146-211 117-187 (289)
279 1cp2_A CP2, nitrogenase iron p 86.1 0.51 1.7E-05 36.5 3.2 66 146-211 114-184 (269)
280 3h2y_A GTPase family protein; 85.6 0.21 7.1E-06 41.2 0.8 48 159-211 57-106 (368)
281 1vma_A Cell division protein F 85.1 1 3.4E-05 36.1 4.6 62 146-211 185-259 (306)
282 2xj4_A MIPZ; replication, cell 84.7 0.13 4.4E-06 40.6 -0.9 34 147-182 103-136 (286)
283 2woj_A ATPase GET3; tail-ancho 83.4 0.97 3.3E-05 36.9 3.8 41 171-211 234-274 (354)
284 3sop_A Neuronal-specific septi 82.5 1.4 4.7E-05 34.5 4.2 39 171-211 111-150 (270)
285 3ez9_A Para; DNA binding, wing 82.3 0.77 2.6E-05 38.0 2.9 62 147-210 247-319 (403)
286 2qnr_A Septin-2, protein NEDD5 81.5 1.4 4.8E-05 35.0 4.0 37 173-211 128-165 (301)
287 3l2o_B F-box only protein 4; s 79.4 2.4 8.2E-05 33.9 4.6 40 170-210 209-256 (312)
288 1ihu_A Arsenical pump-driving 79.0 1.1 3.7E-05 39.1 2.8 39 173-211 199-237 (589)
289 3zq6_A Putative arsenical pump 77.0 2.1 7.3E-05 34.3 3.8 39 173-211 223-261 (324)
290 3cnl_A YLQF, putative uncharac 76.4 1.8 6.1E-05 33.7 3.1 32 155-186 4-36 (262)
291 1ihu_A Arsenical pump-driving 76.2 0.88 3E-05 39.7 1.4 41 171-211 489-529 (589)
292 2px0_A Flagellar biosynthesis 75.6 1.7 5.8E-05 34.5 2.8 39 146-184 181-225 (296)
293 3of5_A Dethiobiotin synthetase 75.0 1.5 5E-05 33.5 2.2 63 146-211 109-179 (228)
294 2rcn_A Probable GTPase ENGC; Y 74.4 4.2 0.00014 33.3 4.9 42 167-211 126-170 (358)
295 3ug7_A Arsenical pump-driving 72.9 3 0.0001 33.8 3.7 40 172-211 237-276 (349)
296 2woo_A ATPase GET3; tail-ancho 71.7 3.1 0.00011 33.4 3.5 39 173-211 222-260 (329)
297 1tq4_A IIGP1, interferon-induc 70.9 12 0.0004 31.3 6.9 60 148-210 120-184 (413)
298 3szr_A Interferon-induced GTP- 70.6 8.5 0.00029 33.8 6.3 64 147-211 146-224 (608)
299 3e70_C DPA, signal recognition 66.5 8.8 0.0003 30.9 5.2 60 148-211 212-278 (328)
300 3ez2_A Plasmid partition prote 66.5 3.3 0.00011 34.0 2.7 34 146-181 243-276 (398)
301 3iqw_A Tail-anchored protein t 64.7 5.9 0.0002 32.0 3.8 39 173-211 223-261 (334)
302 2yhs_A FTSY, cell division pro 62.7 14 0.00048 31.6 5.9 61 147-211 375-448 (503)
303 3io3_A DEHA2D07832P; chaperone 62.3 5.1 0.00017 32.6 3.0 39 173-211 232-270 (348)
304 3zyz_A Beta-D-glucoside glucoh 56.6 22 0.00075 31.9 6.3 47 162-209 418-481 (713)
305 3pg5_A Uncharacterized protein 55.4 6.5 0.00022 31.9 2.5 34 147-182 153-186 (361)
306 3abz_A Beta-glucosidase I; gly 54.3 24 0.00081 32.4 6.2 48 161-209 563-622 (845)
307 2f62_A Nucleoside 2-deoxyribos 53.9 12 0.00042 26.8 3.5 46 162-208 58-105 (161)
308 3fgn_A Dethiobiotin synthetase 53.0 18 0.00063 27.8 4.7 66 146-211 125-196 (251)
309 3qxc_A Dethiobiotin synthetase 52.1 18 0.00062 27.6 4.4 65 146-211 130-199 (242)
310 1rj9_A FTSY, signal recognitio 51.6 45 0.0015 26.3 6.9 59 149-211 186-257 (304)
311 1s2d_A Purine trans deoxyribos 50.1 25 0.00086 25.2 4.7 43 163-207 73-115 (167)
312 2hf9_A Probable hydrogenase ni 49.4 15 0.00052 26.9 3.6 56 148-211 119-174 (226)
313 3q5d_A Atlastin-1; G protein, 47.1 8.1 0.00028 32.6 1.9 48 147-196 139-193 (447)
314 3fkq_A NTRC-like two-domain pr 45.4 16 0.00054 29.7 3.4 34 146-181 258-291 (373)
315 3ehd_A Uncharacterized conserv 45.3 30 0.001 24.8 4.4 44 162-207 60-103 (162)
316 2khz_A C-MYC-responsive protei 44.4 28 0.00097 24.7 4.3 43 163-209 69-111 (165)
317 1f8y_A Nucleoside 2-deoxyribos 40.8 28 0.00095 24.7 3.7 43 163-207 70-112 (157)
318 4fyk_A Deoxyribonucleoside 5'- 38.6 40 0.0014 23.8 4.1 42 161-206 58-99 (152)
319 3j20_R 30S ribosomal protein S 37.3 91 0.0031 20.8 5.6 52 35-88 30-88 (113)
320 3imk_A Putative molybdenum car 34.6 1E+02 0.0035 21.9 5.6 41 161-203 63-103 (158)
321 1eiw_A Hypothetical protein MT 34.5 32 0.0011 22.9 2.9 39 167-206 34-72 (111)
322 2x41_A Beta-glucosidase; hydro 34.3 58 0.002 29.1 5.4 46 163-209 436-498 (721)
323 3v7e_A Ribosome-associated pro 32.1 59 0.002 20.1 3.8 45 163-209 17-61 (82)
324 1at0_A 17-hedgehog; developmen 28.7 47 0.0016 23.0 3.2 32 41-72 85-118 (145)
325 3u5c_L RP41, S18, YS12, 40S ri 26.9 1.7E+02 0.0058 20.7 5.7 52 35-88 67-125 (156)
326 3do6_A Formate--tetrahydrofola 26.1 54 0.0019 28.1 3.5 53 157-211 295-370 (543)
327 2aif_A Ribosomal protein L7A; 26.0 79 0.0027 21.6 3.9 46 163-209 47-92 (135)
328 2ale_A SNU13, NHP2/L7AE family 25.9 71 0.0024 21.9 3.6 46 163-209 38-83 (134)
329 1rlg_A 50S ribosomal protein L 25.1 65 0.0022 21.4 3.3 46 163-209 33-78 (119)
330 2lbw_A H/ACA ribonucleoprotein 23.4 71 0.0024 21.4 3.2 44 163-207 26-69 (121)
331 3pzx_A Formate--tetrahydrofola 23.3 58 0.002 28.0 3.2 52 158-211 310-384 (557)
332 2xzm_U Ribosomal protein L7AE 22.9 1.1E+02 0.0037 20.7 4.0 46 163-209 30-75 (126)
333 2xzm_Q Ribosomal protein S17 c 21.9 1.2E+02 0.0041 21.5 4.2 52 35-88 66-124 (157)
334 1y7o_A ATP-dependent CLP prote 21.9 1.8E+02 0.0061 21.5 5.5 37 172-209 75-111 (218)
335 3gv0_A Transcriptional regulat 21.6 1.9E+02 0.0066 21.5 5.9 27 170-202 65-91 (288)
336 2pn0_A Prokaryotic transcripti 20.2 1E+02 0.0035 21.2 3.6 24 49-72 105-129 (141)
337 3r4v_A Putative uncharacterize 20.0 2.4E+02 0.0083 22.4 5.9 47 161-208 70-117 (315)
No 1
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=99.89 E-value=9.1e-24 Score=162.97 Aligned_cols=124 Identities=23% Similarity=0.284 Sum_probs=105.2
Q ss_pred CCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceecccCceehhccCCCcc
Q psy9646 17 DLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRD 96 (211)
Q Consensus 17 ~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~ 96 (211)
+.++||||||+++|+ +.|++++|+|++|.+++||+|.++|++. +++|++|+++++++++|.|||+|+++|++++..
T Consensus 2 ~~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~--~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~ 77 (204)
T 3e1y_E 2 PLGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKH--NVEVLGILSDDVETDTVAPGENLKIRLKGIEEE 77 (204)
T ss_dssp -----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTE--EEEEEEECSSSSCBSEECTTSEEEEEEEESSSS
T ss_pred CCCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCC--EEEEEEEEECCEEeEEECCCCEEEEEEcCCCHH
Confidence 357899999999998 7999999999999999999999999974 899999999999999999999999999999999
Q ss_pred cccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEee
Q psy9646 97 EVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYA 144 (211)
Q Consensus 97 ~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~ 144 (211)
+++||++++++..++.....|.+.+....++.....|+...+++++..
T Consensus 78 di~rG~vl~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~l~~~t~~ 125 (204)
T 3e1y_E 78 EILPGFILCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCI 125 (204)
T ss_dssp CCCTTCEEBCSSSCCCCCSEEEEEEECCSCCSCCCTTEEEEEESSSCE
T ss_pred HCccceEEECCCCCCchhEEEEEEEEEeCCCCccCCCceEEEEEeCCE
Confidence 999999999988777778889998876666656667777766554443
No 2
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=7.4e-22 Score=168.77 Aligned_cols=138 Identities=23% Similarity=0.301 Sum_probs=122.2
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|++.|++ +++|.+..++||+|+|+++|+ +.|++++|+|++|.+++||.|.++|++. +++|++|+++++++++|.
T Consensus 226 ~L~~~l~~-i~~~~~~~~~p~r~~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~--~~~V~~i~~~~~~~~~a~ 300 (439)
T 3j2k_7 226 PFIPYLDN-LPNFNRSVDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKH--NVEVLGILSDDTETDFVA 300 (439)
T ss_pred HHHHHHHh-CCCCccCCCCCeEEEEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCCc--eEEEEEEEECCeEcCEec
Confidence 47888888 788888899999999999986 7899999999999999999999999974 899999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEee
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYA 144 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~ 144 (211)
|||+|+++|++++..+++||++++++..++.....|.+.+....++.....|++..+++++..
T Consensus 301 aG~~v~~~l~gi~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~ 363 (439)
T 3j2k_7 301 PGENLKIRLKGIEEEEILPGFILCDPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCI 363 (439)
T ss_pred CCCcceEEEeccchhhcCCcEEecCCCCCCceeeEEEEEEEEeCCCCcCCCCCEEEEEEeceE
Confidence 999999999999999999999999988777777889998877777766677777766655543
No 3
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.84 E-value=4.7e-21 Score=161.90 Aligned_cols=139 Identities=55% Similarity=0.876 Sum_probs=117.1
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|.+.+|+|.++.++||+|+|+++|++++.|++++|+|.+|.+++||+|.+.|.+...+++|++|+++++++++|.
T Consensus 184 ~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~ 263 (397)
T 1d2e_A 184 KLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAE 263 (397)
T ss_dssp HHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEE
T ss_pred HHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEec
Confidence 58899999899899999999999999999999999999999999999999999999975345899999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccch-----hhcccceEEeEeEE
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAP-----EEKARGITINVAHV 141 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~-----~e~~rg~tv~~~~~ 141 (211)
|||+|+++|++++..++++|++++.+.. +.....|.+.+....++ .....|+...++.+
T Consensus 264 aG~~v~~~l~~i~~~~i~~G~~l~~~~~-~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~ 327 (397)
T 1d2e_A 264 AGDNLGALVRGLKREDLRRGLVMAKPGS-IQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSL 327 (397)
T ss_dssp TTCEEEEEESSCCGGGCCTTCEEESTTS-CCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEET
T ss_pred CCCceEEEecccchhccCceeEEeCCCC-CCcccEEEEEEEEeccccccCccccCCCCEEEEEEe
Confidence 9999999999999999999999998663 45567788776544432 23445555444433
No 4
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.84 E-value=2.8e-21 Score=166.02 Aligned_cols=140 Identities=34% Similarity=0.506 Sum_probs=123.8
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|+. +++|.+..+.||+|+|+++|++++.|++++|+|++|.+++||+|.++|.+ ..++|++|+++++++++|.
T Consensus 225 ~Ll~~l~~-~~~p~~~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~a~ 301 (458)
T 1f60_A 225 TLLEAIDA-IEQPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG--VTTEVKSVEMHHEQLEQGV 301 (458)
T ss_dssp SHHHHHHT-SCCCCCCTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTT--EEEEEEEEEETTEECSCBC
T ss_pred HHHHHhhc-cCCCcccCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCC--ceEEEeEEEECCeEEEEEc
Confidence 58999998 78888899999999999999999999999999999999999999999996 4899999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccch-hhhhhhhcccccccccchhhcccceEEeEeEEEee
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVL-ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYA 144 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~-~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~ 144 (211)
|||+|++.|++++..++++|++++.+.. ++.....|.+.+....++.....|++..+++++..
T Consensus 302 aG~~v~i~l~gi~~~~i~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~ 365 (458)
T 1f60_A 302 PGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAH 365 (458)
T ss_dssp TTCEEEEEESSCCTTTSCTTCEEEETTSSCCCCCSEEEEEEEECSCSCCBCTTCCCEEEETTEE
T ss_pred CCCEEEEEEcCCcccccCceeEEecCCCCCCceeeEEEEEEEEeCCCCCCCCCCEEEEEeccce
Confidence 9999999999998999999999998764 67778889988876666667777777666655444
No 5
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.84 E-value=4.6e-21 Score=163.78 Aligned_cols=141 Identities=28% Similarity=0.470 Sum_probs=122.6
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|+. +++|.+..++||+|||+++|++++.|++++|+|.+|.+++||.|.+.|++. .++|++|+++++++++|.
T Consensus 214 ~Ll~~l~~-~~~p~~~~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~--~~~V~~i~~~~~~~~~a~ 290 (435)
T 1jny_A 214 TLEEYLDQ-LELPPKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGK--VGEVRSIETHHTKMDKAE 290 (435)
T ss_dssp CHHHHHTT-CCCCCCGGGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTE--EEEEEEEEETTEEESEEC
T ss_pred hHHHHHhc-cCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCcee--EEEEEEEEECCcEEeEEc
Confidence 68999988 677888788999999999999999999999999999999999999999874 899999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeee
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYAT 145 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~ 145 (211)
|||+|+++|++++..++++|++++.+..++.....|.+.+....++.....|+...+++++...
T Consensus 291 aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~~~~~t~~~ 354 (435)
T 1jny_A 291 PGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVVWHPTALANGYTPVLHVHTASV 354 (435)
T ss_dssp TTCEEEEEEESSCGGGCCTTCEEECTTSCCCEESEEEEEEEECCCSSCBCTTCCCEEEETTEEE
T ss_pred CCCEEEEEEecCCHHHcCCccEecCCCCCceEeEEEEEEEEEECCCCcCCCCCEEEEEeCCcEE
Confidence 9999999999999999999999998876677778888887666555666777776666555443
No 6
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.84 E-value=8.1e-21 Score=160.86 Aligned_cols=140 Identities=45% Similarity=0.694 Sum_probs=117.5
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCc-eeeEEEEEEEecceeccee
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGR-QFKTTVTGIEMFHKILDEA 80 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~-~~~~~v~~i~~~~~~~~~a 80 (211)
+|+++|++++|+|.+..++||+|+|+++|++++.|++++|+|.+|.+++||+|.+.|.+. ..+++|++|+++++++++|
T Consensus 201 ~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a 280 (405)
T 2c78_A 201 ELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEG 280 (405)
T ss_dssp HHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEE
T ss_pred HHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEE
Confidence 588999998988888999999999999999999999999999999999999999999862 2478999999999999999
Q ss_pred cccCceehhccCCCcccccccccccccchhhhhhhhcccccccccch-----hhcccceEEeEeEEE
Q psy9646 81 QAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAP-----EEKARGITINVAHVE 142 (211)
Q Consensus 81 ~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~-----~e~~rg~tv~~~~~~ 142 (211)
.|||+|+++|++++..++++|++++.+.. +.....|.+.+....++ .....|+...++.++
T Consensus 281 ~aG~~v~~~l~g~~~~~i~~G~~l~~~~~-~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t 346 (405)
T 2c78_A 281 IAGDNVGVLLRGVSREEVERGQVLAKPGS-ITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRT 346 (405)
T ss_dssp ETTCEEEEEESSCCTTTCCTTCEEESTTS-SEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETT
T ss_pred cCCCEEEEEECCCcHhhcCceEEEEcCCC-CceeEEEEEEEEEecccCCCccccccCCceEEEEEcc
Confidence 99999999999999999999999998763 45567788777544432 234555555554443
No 7
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.83 E-value=7.9e-21 Score=164.29 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=118.6
Q ss_pred HHHHHhhh---CCC--CCCCCCCCeeEEEeeEEeec---CCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc
Q psy9646 3 LLNQIDTY---IPQ--PVRDLDKPFYLPVEHTYSIP---GRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH 74 (211)
Q Consensus 3 ll~~l~~~---i~~--p~~~~~~p~~~~v~~~~~~~---~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~ 74 (211)
|++.|+.. +|. |.+..+.||+|+|+++|+++ +.|++++|+|++|.+++||.|.++|++. +++|++|++++
T Consensus 243 L~~~L~~i~~~~~~~~p~~~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~--~~~V~~i~~~~ 320 (483)
T 3p26_A 243 LMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQ--SCIVDKIQVGS 320 (483)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTE--EEEEEEEEETT
T ss_pred HHHHHHHHHhhcccccccccCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCC--eEEEEEEEEcC
Confidence 55555553 333 66788999999999999988 5899999999999999999999999975 89999999995
Q ss_pred --------eecceecccCceehhccCCCcccccccccccccch-hhhhhhhcccccccccchhhcccceEEeEeEEEeee
Q psy9646 75 --------KILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPVL-ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYAT 145 (211)
Q Consensus 75 --------~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~-~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~ 145 (211)
+++++|.|||+|+++|++.+..+++||++++.+.. ++.....|.+.+....++.....|++..+.+++...
T Consensus 321 ~~~~~~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~ 400 (483)
T 3p26_A 321 QQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQ 400 (483)
T ss_dssp TC-----CCEESCEETTCEEEEEEESCCGGGCCTTCEEECTTCCCCEECSEEEEEEEECSCSSCBCTTCEEEEEETTEEE
T ss_pred ccccccccccccEECCCCEEEEEEEecccccCCceEEEEcCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEeCceEE
Confidence 89999999999999999999999999999998876 777888899888765566677788888776665544
Q ss_pred C
Q psy9646 146 E 146 (211)
Q Consensus 146 ~ 146 (211)
.
T Consensus 401 ~ 401 (483)
T 3p26_A 401 P 401 (483)
T ss_dssp E
T ss_pred E
Confidence 3
No 8
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.83 E-value=1.6e-20 Score=165.67 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=123.0
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecc-ee
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILD-EA 80 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~-~a 80 (211)
+|+++|++.. +|.+..++||+|+|+++|++ +.|++++|+|.+|.+++||.|.++|++. .++|++|++++++++ +|
T Consensus 386 ~Lle~l~~~~-pp~~~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~--~~~V~~i~~~~~~~~~~a 461 (592)
T 3mca_A 386 TLLSALDQLV-PPEKPYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQE--DAYVKNVIRNSDPSSTWA 461 (592)
T ss_dssp CHHHHHHTSC-CCSCTTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTE--EEEEEEEECSSSCSCCEE
T ss_pred HHHHHHHhhc-cccccccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCc--eEEEEEEEEcCccCccee
Confidence 6899999954 47788899999999999999 9999999999999999999999999975 899999999999999 99
Q ss_pred cccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeee
Q psy9646 81 QAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYAT 145 (211)
Q Consensus 81 ~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~ 145 (211)
.|||+|+++|++++..++++|++++.+..++.....|.+.+....++.....|+...+++++...
T Consensus 462 ~aG~~v~~~l~~i~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~~~~~~pi~~g~~~~l~~~t~~~ 526 (592)
T 3mca_A 462 VAGDTVTLQLADIEVNQLRPGDILSNYENPVRRVRSFVAEIQTFDIHGPILSGSTLVLHLGRTVT 526 (592)
T ss_dssp ETTCEEEEEESSSCGGGCCTTCEEECSSSCCEEESEEEEEEEECSCSSCEETTEEEEEECSSCEE
T ss_pred cCCCEEEEEEccccccccceEEEeccCCCCccccCeEEEEEEEECCCccCCCCCEEEEEEcCcEE
Confidence 99999999999999999999999999877777778888877666666667777777776655443
No 9
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2e-20 Score=165.61 Aligned_cols=143 Identities=14% Similarity=0.114 Sum_probs=121.9
Q ss_pred hHHHHHhhhC---CC--CCCCCCCCeeEEEeeEEeec---CCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEec
Q psy9646 2 ELLNQIDTYI---PQ--PVRDLDKPFYLPVEHTYSIP---GRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMF 73 (211)
Q Consensus 2 ~ll~~l~~~i---~~--p~~~~~~p~~~~v~~~~~~~---~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~ 73 (211)
+|++.|+... |. |.+..+.||||+|+++|+++ +.|++++|+|++|.+++||.|.++|++. +++|++|+++
T Consensus 376 ~L~~~L~~l~~~~p~~~p~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~--~~~VksI~~~ 453 (611)
T 3izq_1 376 NLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQ--SCIVDKIQVG 453 (611)
T ss_dssp CHHHHHTTSCCCCCCSSSCCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTE--EEEEEEEECS
T ss_pred cHHHHHHHHhhcccccCcccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCc--eEEEEEEEEc
Confidence 4677777732 22 45678899999999999988 5899999999999999999999999975 8999999999
Q ss_pred c--------eecceecccCceehhccCCCcccccccccccccch-hhhhhhhcccccccccchhhcccceEEeEeEEEee
Q psy9646 74 H--------KILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPVL-ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYA 144 (211)
Q Consensus 74 ~--------~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~-~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~ 144 (211)
+ +++++|.|||+|+++|++.+..+++||++++.+.. ++..+..|.+.+....++.....|++..+++++..
T Consensus 454 ~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~ 533 (611)
T 3izq_1 454 SQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKE 533 (611)
T ss_dssp SCCSCSSSCCCCCCEETTCEEEEEESSCCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECSCSSCBCTTEEEEEESSSCE
T ss_pred ccccccccccccceecCCCcceEEeeeccHhhCcceEEccCCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEECCeE
Confidence 4 79999999999999999999999999999999877 77888889998876666777788888887766655
Q ss_pred eC
Q psy9646 145 TE 146 (211)
Q Consensus 145 ~~ 146 (211)
..
T Consensus 534 ~~ 535 (611)
T 3izq_1 534 QP 535 (611)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 10
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.80 E-value=6.2e-20 Score=160.54 Aligned_cols=90 Identities=26% Similarity=0.470 Sum_probs=73.4
Q ss_pred cccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG 200 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~ 200 (211)
..+|..+.|+.||+|+.++..++.++++++++||||||.||..++.++++.+|+||+||||.+|+++||+.+|++|.+.+
T Consensus 73 ~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~ 152 (548)
T 3vqt_A 73 ATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRA 152 (548)
T ss_dssp ---------------CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTT
T ss_pred cccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
+| .|++||||
T Consensus 153 lp-~i~fINK~ 162 (548)
T 3vqt_A 153 TP-VMTFVNKM 162 (548)
T ss_dssp CC-EEEEEECT
T ss_pred Cc-eEEEEecc
Confidence 99 66899997
No 11
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.79 E-value=2.7e-20 Score=160.25 Aligned_cols=135 Identities=21% Similarity=0.340 Sum_probs=116.7
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEec-ceeccee
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMF-HKILDEA 80 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~-~~~~~~a 80 (211)
+|++.|++ +++|.++.++||+|||+++|+ +.|++++|+|++|.+++||.|.++|++. .++|++|+++ ++++++|
T Consensus 255 ~L~~~l~~-i~~~~~~~~~p~~~~v~~~~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~~--~~~V~~i~~~~~~~~~~a 329 (467)
T 1r5b_A 255 SLLEYLDS-MTHLERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQ--TLEVTAIYDEADEEISSS 329 (467)
T ss_dssp CHHHHHHH-CCCCHHHHTSCCEEECCEEEE--SSSEEEEEECCBSEEETTEEEEEETTTE--EEEEEEEECTTCCEESEE
T ss_pred hHHHHHHh-CCCCcCCCCCCcEEEEEEEEe--CCCeEEEEEEeeeEEeeCCEEEEccCCe--eEEEEEEeccCCcEeeEE
Confidence 47888888 888888889999999999987 5789999999999999999999999974 8899999998 8999999
Q ss_pred cccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEE
Q psy9646 81 QAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVE 142 (211)
Q Consensus 81 ~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~ 142 (211)
.|||+|+++|++ +..++++|++++.+..++.....|.+.+....++.....|+...+++++
T Consensus 330 ~aG~~v~i~l~g-~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~g~~~~~~~~t 390 (467)
T 1r5b_A 330 ICGDQVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHT 390 (467)
T ss_dssp ETTCEEEEEEES-CCTTCCTTCEEECSSSCCCEEEEEEEEEEECSSCCCBSSCCCBEEESSS
T ss_pred cCCCEEEEEEec-cHhhCCceEEEeCCCCCCccceEEEEEEEEeCCCCccCCCCEEEEEEeC
Confidence 999999999998 8899999999999877777888899888766666556667655554444
No 12
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.79 E-value=4e-19 Score=150.35 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=117.8
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecC--------CcEEEEEEEEEEEEecCCEEEEeecCce----------e
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPG--------RGTVVTGRLERGIVKKGMECEFTGYGRQ----------F 63 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~--------~G~v~~G~v~~G~i~~g~~v~i~p~~~~----------~ 63 (211)
+|+++|.+.++.|.++.++||+|+|+++|++++ +|++++|+|.+|.+++||+|.+.|++.. .
T Consensus 181 ~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~ 260 (403)
T 3sjy_A 181 SLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPI 260 (403)
T ss_dssp HHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccc
Confidence 588999988888888899999999999998766 8999999999999999999999997631 2
Q ss_pred eEEEEEEEecceecceecccCceehhcc---CCCcccccccccccccchhhhhhhhcccccccccc---------hhhcc
Q psy9646 64 KTTVTGIEMFHKILDEAQAGDQLGALVK---GMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNA---------PEEKA 131 (211)
Q Consensus 64 ~~~v~~i~~~~~~~~~a~~G~~v~~~l~---~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~---------~~e~~ 131 (211)
.++|++|+++++++++|.|||+|+++++ +++..++.+|++++.+...+.....|.+.+....+ +....
T Consensus 261 ~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~ 340 (403)
T 3sjy_A 261 FTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIR 340 (403)
T ss_dssp EEEEEEEEETTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCC
T ss_pred cEEEEEEEECCEEcCEEeCCCEEEEEeccccccchhhhccccEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCC
Confidence 5799999999999999999999999886 55678999999999988777767778877764432 34455
Q ss_pred cceEEeEeEEEee
Q psy9646 132 RGITINVAHVEYA 144 (211)
Q Consensus 132 rg~tv~~~~~~~~ 144 (211)
.|+.+.+++.+.+
T Consensus 341 ~~~~~~~~~gt~~ 353 (403)
T 3sjy_A 341 AKETLMLSVGSST 353 (403)
T ss_dssp TTCEEEEEETTEE
T ss_pred CCCEEEEEECccE
Confidence 5666666555444
No 13
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.78 E-value=6.2e-19 Score=149.45 Aligned_cols=143 Identities=22% Similarity=0.297 Sum_probs=118.0
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecC--------CcEEEEEEEEEEEEecCCEEEEeecCc----------ee
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPG--------RGTVVTGRLERGIVKKGMECEFTGYGR----------QF 63 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~--------~G~v~~G~v~~G~i~~g~~v~i~p~~~----------~~ 63 (211)
+|+++|.+.++.|.++.++||+|+|+++|++++ +|++++|+|.+|.+++||.|.+.|++. ..
T Consensus 187 ~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~ 266 (408)
T 1s0u_A 187 VLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPL 266 (408)
T ss_dssp HHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEE
T ss_pred HHHHHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccc
Confidence 588999988888888999999999999998764 788999999999999999999999642 13
Q ss_pred eEEEEEEEecceecceecccCceehhcc---CCCcccccccccccccchhhhhhhhcccccccccch---------hhcc
Q psy9646 64 KTTVTGIEMFHKILDEAQAGDQLGALVK---GMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAP---------EEKA 131 (211)
Q Consensus 64 ~~~v~~i~~~~~~~~~a~~G~~v~~~l~---~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~---------~e~~ 131 (211)
.++|++|+++++++++|.|||+|+++++ +++..++++|++++.+..++.....|.+.+....++ ....
T Consensus 267 ~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~ 346 (408)
T 1s0u_A 267 TTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLR 346 (408)
T ss_dssp EEECCEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCC
T ss_pred eeEEEEEEECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCC
Confidence 6899999999999999999999999887 567789999999998877666667787776554442 4566
Q ss_pred cceEEeEeEEEee
Q psy9646 132 RGITINVAHVEYA 144 (211)
Q Consensus 132 rg~tv~~~~~~~~ 144 (211)
.|+...++.++..
T Consensus 347 ~g~~~~~~~~t~~ 359 (408)
T 1s0u_A 347 TGEVLMLNIGTAT 359 (408)
T ss_dssp TTCEEEEEETTEE
T ss_pred CCCEEEEEEcCCE
Confidence 6777666655443
No 14
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.77 E-value=5.9e-20 Score=163.49 Aligned_cols=89 Identities=36% Similarity=0.594 Sum_probs=86.1
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.+|.++.|+.||+|+.++..++.++++++++||||||.||..++.++++.+|++|+||||.+|+++||+.+|++|.+.++
T Consensus 41 ~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~l 120 (638)
T 3j25_A 41 RTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 120 (638)
T ss_dssp STTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTC
T ss_pred ccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
| .|++||||
T Consensus 121 p-~i~~INKm 129 (638)
T 3j25_A 121 P-TIFFINKI 129 (638)
T ss_dssp S-CEECCEEC
T ss_pred C-eEEEEecc
Confidence 9 56899997
No 15
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.76 E-value=9e-19 Score=161.73 Aligned_cols=122 Identities=51% Similarity=0.859 Sum_probs=108.6
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~ 81 (211)
+|+++|++.+|.|.++.++||+|||+++|++++.|++++|+|.+|.+++||+|.+.|.+...+++|++|+++++++++|.
T Consensus 475 eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~ 554 (1289)
T 3avx_A 475 ELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGR 554 (1289)
T ss_dssp HHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEE
T ss_pred hhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEe
Confidence 58899999888888888999999999999999999999999999999999999999986335789999999999999999
Q ss_pred ccCceehhccCCCcccccccccccccchhhhhhhhcccccccc
Q psy9646 82 AGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADID 124 (211)
Q Consensus 82 ~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~ 124 (211)
|||+|+++|++++..++++|++++.+.. +.....|.+.+...
T Consensus 555 AGd~Vgl~L~GI~~~dI~RGdVL~~~~~-~~~~~~F~A~V~~L 596 (1289)
T 3avx_A 555 AGENVGVLLRGIKREEIERGQVLAKPGT-IKPHTKFESEVYIL 596 (1289)
T ss_dssp TTCEEEEEESSCCGGGCCTTCEEESTTS-CCEEEEEEEEEEEC
T ss_pred cCCcceeEeeecchhcCCcccEEecCCC-CccceeEEEEEEEE
Confidence 9999999999999999999999998664 34456677766443
No 16
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.75 E-value=6.1e-18 Score=143.40 Aligned_cols=143 Identities=20% Similarity=0.274 Sum_probs=116.7
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecC--------CcEEEEEEEEEEEEecCCEEEEeecCc----------ee
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPG--------RGTVVTGRLERGIVKKGMECEFTGYGR----------QF 63 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~--------~G~v~~G~v~~G~i~~g~~v~i~p~~~----------~~ 63 (211)
+|+++|.+.++.|.++.+.||+|+|+++|++++ +|++++|+|.+|.+++||+|.++|+++ ..
T Consensus 189 ~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~ 268 (410)
T 1kk1_A 189 VLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPI 268 (410)
T ss_dssp HHHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccc
Confidence 588999988888888889999999999998753 788999999999999999999999742 12
Q ss_pred eEEEEEEEecceecceecccCceehhcc---CCCcccccccccccccchhhhhhhhcccccccccch---------hhcc
Q psy9646 64 KTTVTGIEMFHKILDEAQAGDQLGALVK---GMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAP---------EEKA 131 (211)
Q Consensus 64 ~~~v~~i~~~~~~~~~a~~G~~v~~~l~---~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~---------~e~~ 131 (211)
.++|++|+++++++++|.|||++++.++ +....++.+|++++.+..++.....|.+.+....++ ....
T Consensus 269 ~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~ 348 (410)
T 1kk1_A 269 TTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIK 348 (410)
T ss_dssp EEEEEEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCC
T ss_pred eeEEEEEEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCC
Confidence 6899999999999999999999999886 455688999999998877766677788776554442 4556
Q ss_pred cceEEeEeEEEee
Q psy9646 132 RGITINVAHVEYA 144 (211)
Q Consensus 132 rg~tv~~~~~~~~ 144 (211)
.|+...+++++..
T Consensus 349 ~g~~~~~~~~t~~ 361 (410)
T 1kk1_A 349 RKEVLLLNVGTAR 361 (410)
T ss_dssp TTCEEEEEETTEE
T ss_pred CCCEEEEEEcCCE
Confidence 6666666655443
No 17
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.75 E-value=2e-18 Score=155.46 Aligned_cols=89 Identities=33% Similarity=0.477 Sum_probs=69.2
Q ss_pred ccccchhhcccceEEeEeEEEeeeC-------CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHH
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATE-------NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLL 194 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~-------~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~ 194 (211)
.+|.++.|+.||+|+.++..++.++ ++.+++||||||.||..++.++++.+|+||+||||.+|++.||+.+|+
T Consensus 52 ~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~ 131 (709)
T 4fn5_A 52 TTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWR 131 (709)
T ss_dssp ----------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH
T ss_pred cCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHH
Confidence 5899999999999999999888775 578999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEEeCC
Q psy9646 195 LAKQIGVTNIVVFINKF 211 (211)
Q Consensus 195 ~~~~~~~~~~i~~inK~ 211 (211)
+|.+.++| .|++||||
T Consensus 132 ~a~~~~lp-~i~~iNKi 147 (709)
T 4fn5_A 132 QANKYGVP-RIVYVNKM 147 (709)
T ss_dssp HHHHHTCC-EEEEEECS
T ss_pred HHHHcCCC-eEEEEccc
Confidence 99999999 66899997
No 18
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.74 E-value=2.2e-18 Score=147.18 Aligned_cols=135 Identities=17% Similarity=0.184 Sum_probs=112.8
Q ss_pred HHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceecc
Q psy9646 3 LLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQA 82 (211)
Q Consensus 3 ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~~ 82 (211)
|++.|+. +++|.+..+.||+|||+++++.++.|+.+.|+|.+|.+++||+|.++|++. .++|++|++++.++++|.|
T Consensus 226 L~~~l~~-i~~~~~~~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~--~~~V~~i~~~~~~~~~a~a 302 (434)
T 1zun_B 226 LMEILET-VEIASDRNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGK--SSRVKSIVTFEGELEQAGP 302 (434)
T ss_dssp TTHHHHH-SCCTTCCCSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCC--EEEEEEEEETTEEESEECT
T ss_pred HHHHHhc-CCCcccCCCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCe--EEEEEEEEEcCcceeEecC
Confidence 7787777 788888889999999999999888888899999999999999999999874 8899999999999999999
Q ss_pred cCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEe
Q psy9646 83 GDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEY 143 (211)
Q Consensus 83 G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~ 143 (211)
||+|+++++ +..++++|++++.+..++.....|.+.+.... +.....|+...+++++.
T Consensus 303 G~~v~~~l~--~~~~i~~G~~l~~~~~~~~~~~~f~a~~~~l~-~~~l~~g~~~~~~~~t~ 360 (434)
T 1zun_B 303 GQAVTLTME--DEIDISRGDLLVHADNVPQVSDAFDAMLVWMA-EEPMLPGKKYDIKRATS 360 (434)
T ss_dssp TCEEEEEES--SCCCCCTTCEEEETTSCCCEEEEEEEEEEECC-SSCBCTTCCEEEECSSC
T ss_pred CCEEEEEeC--CccccCCccEEECCCCCCCcccEEEEEEEEec-cccCCCCCEEEEEEcCC
Confidence 999999998 35689999999988777677778888775442 33455566555554443
No 19
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.73 E-value=1.4e-18 Score=145.44 Aligned_cols=140 Identities=17% Similarity=0.287 Sum_probs=111.1
Q ss_pred hHHHHHhhhCCCC---CCC-CCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceec
Q psy9646 2 ELLNQIDTYIPQP---VRD-LDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKIL 77 (211)
Q Consensus 2 ~ll~~l~~~i~~p---~~~-~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~ 77 (211)
+|+++|.+.++.| ... ...|++++|+++|++++.|++++|+|++|.+++||+|.+.|.+. .++|++|+++++++
T Consensus 169 ~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~--~~~V~~i~~~~~~v 246 (370)
T 2elf_A 169 ELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDR--DIEIRSIQSHDVDI 246 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEEETTTE--EEEEEEEEETTEEE
T ss_pred HHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCc--EEEEeEEEECCCCc
Confidence 3566666654432 112 34567888999999999999999999999999999999999974 89999999999999
Q ss_pred ceecccCceehhccCCCcccccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeeeC
Q psy9646 78 DEAQAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATE 146 (211)
Q Consensus 78 ~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~ 146 (211)
++|.|||+|++.|++++..++++|++++. .+ .....|.+.+....++.....|+...+.+++....
T Consensus 247 ~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~--~~-~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~ 312 (370)
T 2elf_A 247 DSAPAGTRVGMRLKNVQAKDIERGFIISD--KE-IVTTDYTLECTVSKFTKKIEPASVLHLFVGLQSEP 312 (370)
T ss_dssp SEEETTCEEEEEEESCCGGGCCTTCEEES--CC-EEEEEEEEEEEECTTSCCBCTTCEEEEEETTEEEE
T ss_pred cEEcCCCcceEEEeccCHHHcCCceEEEC--CC-ceeEEEEEEEEEECCCCCCCCCCEEEEEEcCCEEE
Confidence 99999999999999999999999999998 34 66777888776655566677788877766555443
No 20
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.71 E-value=2.3e-17 Score=140.93 Aligned_cols=100 Identities=40% Similarity=0.646 Sum_probs=92.8
Q ss_pred hhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-----
Q psy9646 112 KKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM----- 186 (211)
Q Consensus 112 ~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~----- 186 (211)
.++.+|...+.++..+.|+.+|+|++..+..+++++.+++|+|||||++|.+++..+++.+|++++|+|+.+|++
T Consensus 59 ~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~ 138 (439)
T 3j2k_7 59 KNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFE 138 (439)
T ss_pred ccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccC
Confidence 345567777789999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --cchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 187 --PQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 187 --~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+++|+.++...++|++|+++||+
T Consensus 139 ~~~qt~e~l~~~~~~~v~~iIvviNK~ 165 (439)
T 3j2k_7 139 KGGQTREHAMLAKTAGVKHLIVLINKM 165 (439)
T ss_pred CCchHHHHHHHHHHcCCCeEEEEeecC
Confidence 7999999999999999888999997
No 21
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.70 E-value=7.1e-19 Score=151.89 Aligned_cols=141 Identities=28% Similarity=0.445 Sum_probs=116.8
Q ss_pred hHHHHHhhhCCCC--CCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecce
Q psy9646 2 ELLNQIDTYIPQP--VRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDE 79 (211)
Q Consensus 2 ~ll~~l~~~i~~p--~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~ 79 (211)
+|+++|.+.++.| .++.++||+|||+++|++++.|++++|+|.+|.+++||.+.+.|.+. .++|++|+++++++++
T Consensus 178 ~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~--~~~V~~i~~~~~~v~~ 255 (482)
T 1wb1_A 178 ELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINM--STKVRSIQYFKESVME 255 (482)
T ss_dssp HHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCC--CEEECCBCGGGSCBCC
T ss_pred HHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCc--EEEEeEEEECCeEeeE
Confidence 4778888866555 77888899999999999999999999999999999999999999874 7899999999999999
Q ss_pred ecccCceehhccCCCcccccccccc-cccchhhhhhhhcccccccc-cchhhcccceEEeEeEEEeee
Q psy9646 80 AQAGDQLGALVKGMKRDEVNRGLIM-AKPVLADKKLAKVKQYADID-NAPEEKARGITINVAHVEYAT 145 (211)
Q Consensus 80 a~~G~~v~~~l~~~~~~~v~~G~ii-~~~~~~~~~~~~f~~~i~~~-~~~~e~~rg~tv~~~~~~~~~ 145 (211)
|.+||+|++.+++++..++++|+++ +.+ .++.....|.+.+... ..+.....++...+++++.+.
T Consensus 256 a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~-~~~~~~~~~~a~v~~l~~~~~~l~~g~~~~l~~~t~~~ 322 (482)
T 1wb1_A 256 AKAGDRVGMAIQGVDAKQIYRGXILTSKD-TKLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIV 322 (482)
T ss_dssp CCSSCCCCEECSSCCSSCCCSSCBCCCTT-CCCCCEEEEEECCCCCSSCCSCCCSSCEEEEEETTEEE
T ss_pred ecCCCEEEEEecCCCHhhccccceEecCC-CCCceeeEEEEEEEEeccCCcccCCCCEEEEEEcccEE
Confidence 9999999999999988999999999 544 3445567788777544 344566667777666555443
No 22
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.61 E-value=6.2e-16 Score=133.06 Aligned_cols=92 Identities=42% Similarity=0.710 Sum_probs=57.0
Q ss_pred ccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-------cchHHH
Q psy9646 120 YADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-------PQTREH 192 (211)
Q Consensus 120 ~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-------~~~~~~ 192 (211)
.+.+|..+.|+.+|+|++..+..+++++.++.|+|||||++|.+++..+++.+|++++|+|+.+|++ +|++++
T Consensus 93 ~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~ 172 (467)
T 1r5b_A 93 SWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREH 172 (467)
T ss_dssp --------------------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHH
T ss_pred hhhcccchhhhhcCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHH
Confidence 3457788889999999999999999999999999999999999999999999999999999999873 799999
Q ss_pred HHHHHHcCCCeEEEEEeCC
Q psy9646 193 LLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 193 ~~~~~~~~~~~~i~~inK~ 211 (211)
+.++...++|++|+++||+
T Consensus 173 l~~~~~~~vp~iivviNK~ 191 (467)
T 1r5b_A 173 AVLARTQGINHLVVVINKM 191 (467)
T ss_dssp HHHHHHTTCSSEEEEEECT
T ss_pred HHHHHHcCCCEEEEEEECc
Confidence 9999999998788999997
No 23
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.59 E-value=3.4e-15 Score=126.03 Aligned_cols=90 Identities=77% Similarity=1.241 Sum_probs=83.9
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.++..+.|..+|+|++..+..++..+.++.|+|||||++|..++..+++.+|++++|+|+.++.+.|+++++.++...++
T Consensus 40 ~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~v 119 (397)
T 1d2e_A 40 EIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGV 119 (397)
T ss_dssp HHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTC
T ss_pred hhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 36777888999999999998899888999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
|.+|+++||+
T Consensus 120 p~iivviNK~ 129 (397)
T 1d2e_A 120 EHVVVYVNKA 129 (397)
T ss_dssp CCEEEEEECG
T ss_pred CeEEEEEECc
Confidence 9777899996
No 24
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.58 E-value=2.9e-15 Score=127.83 Aligned_cols=95 Identities=41% Similarity=0.597 Sum_probs=81.9
Q ss_pred cccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHH
Q psy9646 117 VKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLA 196 (211)
Q Consensus 117 f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~ 196 (211)
+...+.+|..+.|+.||+|++..+..+.+.+.++.|+|||||++|..++..+++.+|++++|+|+.++++.|+++++..+
T Consensus 73 ~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~ 152 (434)
T 1zun_B 73 VDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIA 152 (434)
T ss_dssp --CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHH
T ss_pred hhhhhhhccChhHHHCCcEEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHH
Confidence 33334578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEEEeCC
Q psy9646 197 KQIGVTNIVVFINKF 211 (211)
Q Consensus 197 ~~~~~~~~i~~inK~ 211 (211)
...++|++|+++||+
T Consensus 153 ~~~~~~~iIvviNK~ 167 (434)
T 1zun_B 153 SLLGIKHIVVAINKM 167 (434)
T ss_dssp HHTTCCEEEEEEECT
T ss_pred HHcCCCeEEEEEEcC
Confidence 999998788999996
No 25
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.58 E-value=1.9e-15 Score=129.01 Aligned_cols=96 Identities=45% Similarity=0.723 Sum_probs=77.0
Q ss_pred hcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCC-------CCcc
Q psy9646 116 KVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDG-------AMPQ 188 (211)
Q Consensus 116 ~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~-------~~~~ 188 (211)
++...+.+|..+.|+.+|+|++..+..+++.+.++.|+|||||++|..++..+++.+|++++|+|+.++ +.+|
T Consensus 52 ~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~q 131 (435)
T 1jny_A 52 SEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQ 131 (435)
T ss_dssp HHHHHHHHHHHHHC-----------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCH
T ss_pred chhhhhhhccChHHHhcCceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchH
Confidence 344445578899999999999999999999999999999999999999999999999999999999999 8889
Q ss_pred hHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 189 TREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 189 ~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+++++..+...++|++|+++||+
T Consensus 132 t~~~~~~~~~~~~~~iivviNK~ 154 (435)
T 1jny_A 132 TREHIILAKTMGLDQLIVAVNKM 154 (435)
T ss_dssp HHHHHHHHHHTTCTTCEEEEECG
T ss_pred HHHHHHHHHHcCCCeEEEEEEcc
Confidence 99999999999987788999996
No 26
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.58 E-value=3.8e-15 Score=128.68 Aligned_cols=99 Identities=34% Similarity=0.588 Sum_probs=75.2
Q ss_pred hhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCC-------C
Q psy9646 113 KLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDG-------A 185 (211)
Q Consensus 113 ~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~-------~ 185 (211)
++.+|...+.++..+.|..+|+|++..+..+++++.++.|+|||||++|.+++..+++.+|++++|+|+.++ +
T Consensus 76 g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~ 155 (483)
T 3p26_A 76 GKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDL 155 (483)
T ss_dssp -------------------CCSSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCC
T ss_pred CCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccch
Confidence 445566667789999999999999999999999999999999999999999999999999999999999988 5
Q ss_pred CcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 186 MPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..|+++++..+...+++++|+++||+
T Consensus 156 ~~qt~e~~~~~~~~~~~~iIvviNK~ 181 (483)
T 3p26_A 156 DGQTKEHMLLASSLGIHNLIIAMNKM 181 (483)
T ss_dssp CHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred hhhHHHHHHHHHHcCCCcEEEEEECc
Confidence 68999999999999988799999996
No 27
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.57 E-value=8e-16 Score=132.08 Aligned_cols=97 Identities=45% Similarity=0.655 Sum_probs=86.9
Q ss_pred hhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-------
Q psy9646 115 AKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP------- 187 (211)
Q Consensus 115 ~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~------- 187 (211)
.+|...+.++..+.|+.+|+|++..+..+++++.++.|+|||||++|.+++..+++.+|++++|+|+.+++++
T Consensus 52 ~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~ 131 (458)
T 1f60_A 52 GSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDG 131 (458)
T ss_dssp SCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTS
T ss_pred cchhhhhhhccchhHHhcCcEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcch
Confidence 3444445578888999999999999999999999999999999999999999999999999999999988755
Q ss_pred chHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 188 QTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 188 ~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+++++.++...++|++|+++||+
T Consensus 132 qt~~~~~~~~~~~v~~iivviNK~ 155 (458)
T 1f60_A 132 QTREHALLAFTLGVRQLIVAVNKM 155 (458)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECG
T ss_pred hHHHHHHHHHHcCCCeEEEEEEcc
Confidence 899999999999998788999996
No 28
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.55 E-value=4.2e-16 Score=137.57 Aligned_cols=98 Identities=38% Similarity=0.615 Sum_probs=49.9
Q ss_pred hhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-------C
Q psy9646 114 LAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-------M 186 (211)
Q Consensus 114 ~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-------~ 186 (211)
+.+|...+.++..+.|..+|+|++..+..+.+++.+++|+|||||++|..++..+++.+|++|+|+|+.+|. .
T Consensus 221 ~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~ 300 (592)
T 3mca_A 221 KGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLEN 300 (592)
T ss_dssp --------------------------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSC
T ss_pred CcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccc
Confidence 344555567889999999999999999999999999999999999999999999999999999999999864 8
Q ss_pred cchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 187 PQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+++|+.++...++|++|+|+||+
T Consensus 301 ~qt~e~l~~~~~lgip~iIvviNKi 325 (592)
T 3mca_A 301 GQTREHAYLLRALGISEIVVSVNKL 325 (592)
T ss_dssp SSHHHHHHHHHHSSCCCEEEEEECG
T ss_pred hHHHHHHHHHHHcCCCeEEEEEecc
Confidence 9999999999999998888999996
No 29
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.55 E-value=8.3e-15 Score=123.93 Aligned_cols=90 Identities=79% Similarity=1.247 Sum_probs=84.2
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.++..+.|..+|+|++..+..+...+.++.|+|||||++|.+++..+++.+|++++|+|+.++.+.|+++++..+...++
T Consensus 49 ~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~i 128 (405)
T 2c78_A 49 DIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128 (405)
T ss_dssp HHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTC
T ss_pred hccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCC
Confidence 36788889999999999988899889999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
|++|+++||+
T Consensus 129 p~iivviNK~ 138 (405)
T 2c78_A 129 PYIVVFMNKV 138 (405)
T ss_dssp CCEEEEEECG
T ss_pred CEEEEEEECc
Confidence 9778899996
No 30
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.54 E-value=7.3e-15 Score=122.80 Aligned_cols=96 Identities=15% Similarity=0.197 Sum_probs=84.3
Q ss_pred cchhhhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC
Q psy9646 107 PVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM 186 (211)
Q Consensus 107 ~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~ 186 (211)
-+....+++++...+. .+++|++..+..+++++.++.|+|||||++|.+++..+++.+|++++|+| .+++.
T Consensus 27 iG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~ 97 (370)
T 2elf_A 27 IGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLD 97 (370)
T ss_dssp EESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCC
T ss_pred ECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCc
Confidence 3445566666655443 78899999999999999999999999999999999999999999999999 99999
Q ss_pred cchHHHHHHHHHcCCCeEEEEEe-CC
Q psy9646 187 PQTREHLLLAKQIGVTNIVVFIN-KF 211 (211)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~i~~in-K~ 211 (211)
+|+++++..+...++|.+|+++| |+
T Consensus 98 ~qt~e~~~~~~~~~i~~~ivvvNNK~ 123 (370)
T 2elf_A 98 AHTGECIIALDLLGFKHGIIALTRSD 123 (370)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCGG
T ss_pred HHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 99999999999999996578999 96
No 31
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.54 E-value=6.8e-15 Score=124.65 Aligned_cols=102 Identities=39% Similarity=0.592 Sum_probs=81.7
Q ss_pred hhhhhhhcccccc---cccchhhcccceEEeEeEEEeeeC-----------------------CceeEeecCCcccccHh
Q psy9646 110 ADKKLAKVKQYAD---IDNAPEEKARGITINVAHVEYATE-----------------------NRHYSHTDCPGHADYIK 163 (211)
Q Consensus 110 ~~~~~~~f~~~i~---~~~~~~e~~rg~tv~~~~~~~~~~-----------------------~~~~~~iDtPG~~~~~~ 163 (211)
...+++++...+. .+..+.|..+|+|+++.+..+... ..++.|+|||||++|.+
T Consensus 19 ~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~ 98 (410)
T 1kk1_A 19 VDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMT 98 (410)
T ss_dssp TTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHHHHH
Confidence 3344555444332 566788888999998876654431 16799999999999999
Q ss_pred HHhhhccccceEEEEEeccCCC-CcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 164 NMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 164 ~~~~~~~~~d~~~~vvd~~~~~-~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++..++..+|++++|+|+.++. .+|+++++..+..++++++|+++||+
T Consensus 99 ~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~ 147 (410)
T 1kk1_A 99 TMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKI 147 (410)
T ss_dssp HHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECG
T ss_pred HHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECc
Confidence 9999999999999999999997 89999999999988987798999996
No 32
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.51 E-value=1.3e-14 Score=125.20 Aligned_cols=88 Identities=35% Similarity=0.605 Sum_probs=68.9
Q ss_pred cccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCC
Q psy9646 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVT 202 (211)
Q Consensus 123 ~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
++..+.|..+|+|++..+..+++++.++.|+|||||++|.+++..+++.+|++++|+|+.+|+++|+.+++..+...++|
T Consensus 48 ~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip 127 (482)
T 1wb1_A 48 HDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP 127 (482)
T ss_dssp ----------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCC
T ss_pred cccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCC
Confidence 56678899999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCC
Q psy9646 203 NIVVFINKF 211 (211)
Q Consensus 203 ~~i~~inK~ 211 (211)
. |+++||+
T Consensus 128 ~-IvviNK~ 135 (482)
T 1wb1_A 128 I-IVVITKS 135 (482)
T ss_dssp B-CEEEECT
T ss_pred E-EEEEECC
Confidence 5 7899996
No 33
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.50 E-value=2.5e-14 Score=121.07 Aligned_cols=101 Identities=36% Similarity=0.588 Sum_probs=76.1
Q ss_pred hhhhhhcccccc---cccchhhcccceEEeEeEEEeee---------------C--------CceeEeecCCcccccHhH
Q psy9646 111 DKKLAKVKQYAD---IDNAPEEKARGITINVAHVEYAT---------------E--------NRHYSHTDCPGHADYIKN 164 (211)
Q Consensus 111 ~~~~~~f~~~i~---~~~~~~e~~rg~tv~~~~~~~~~---------------~--------~~~~~~iDtPG~~~~~~~ 164 (211)
..+++++...+. .+..+.|..+|+|+++.+..... + ...+.|+|||||++|.++
T Consensus 18 d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~ 97 (408)
T 1s0u_A 18 DHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMAT 97 (408)
T ss_dssp TSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHHHHHH
Confidence 344444443332 56677888899998877654432 1 167999999999999999
Q ss_pred HhhhccccceEEEEEeccCCC-CcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 165 MITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 165 ~~~~~~~~d~~~~vvd~~~~~-~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+..+++.+|++++|+|+.++. .+|+.+++..+..++++++|+++||+
T Consensus 98 ~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~ 145 (408)
T 1s0u_A 98 MLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKI 145 (408)
T ss_dssp HHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECT
T ss_pred HHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEcc
Confidence 999999999999999999997 89999999999888987788999996
No 34
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.1e-14 Score=128.80 Aligned_cols=97 Identities=35% Similarity=0.611 Sum_probs=88.1
Q ss_pred hhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCC-------CCc
Q psy9646 115 AKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDG-------AMP 187 (211)
Q Consensus 115 ~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~-------~~~ 187 (211)
.+|...+.++..+.|..+|+|++..+..+.+.+.++.|+|||||++|.+++..+++.+|++|+|+|+..| +.+
T Consensus 212 ~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~ 291 (611)
T 3izq_1 212 SSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDG 291 (611)
T ss_dssp SCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTS
T ss_pred cccceeeeeccchhhhhCCeeEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhh
Confidence 4455556678888899999999999999999999999999999999999999999999999999999876 568
Q ss_pred chHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 188 QTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 188 ~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+++++..+...++|++|+|+||+
T Consensus 292 qt~e~l~~~~~lgi~~iIVVvNKi 315 (611)
T 3izq_1 292 QTKEHMLLASSLGIHNLIIAMNKM 315 (611)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEECT
T ss_pred HHHHHHHHHHHcCCCeEEEEEecc
Confidence 999999999999998899999997
No 35
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.48 E-value=6.2e-14 Score=129.86 Aligned_cols=89 Identities=78% Similarity=1.241 Sum_probs=71.6
Q ss_pred cccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCC
Q psy9646 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVT 202 (211)
Q Consensus 123 ~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
++..+.|..+|+|+++.+..++..+.++.|+|||||++|..++..+++.+|++++|+|+.++.+.|+++++..+...++|
T Consensus 334 lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP 413 (1289)
T 3avx_A 334 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 413 (1289)
T ss_dssp --------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCS
T ss_pred cccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCC
Confidence 56677889999999998888998899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCC
Q psy9646 203 NIVVFINKF 211 (211)
Q Consensus 203 ~~i~~inK~ 211 (211)
++|+++||+
T Consensus 414 ~IIVVINKi 422 (1289)
T 3avx_A 414 YIIVFLNKC 422 (1289)
T ss_dssp CEEEEEECC
T ss_pred eEEEEEeec
Confidence 878899997
No 36
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.46 E-value=1e-13 Score=122.14 Aligned_cols=90 Identities=29% Similarity=0.439 Sum_probs=66.1
Q ss_pred cccccchhhcccceEEeEeEEEeeeC-----CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHH
Q psy9646 121 ADIDNAPEEKARGITINVAHVEYATE-----NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLL 195 (211)
Q Consensus 121 i~~~~~~~e~~rg~tv~~~~~~~~~~-----~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~ 195 (211)
..++..+.|+.||+|+......+.+. ++.++|+|||||.+|..++..+++.+|++++|+|+.+|+..|+.+++..
T Consensus 39 ~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~ 118 (599)
T 3cb4_D 39 QVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYT 118 (599)
T ss_dssp ------------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHH
T ss_pred cccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH
Confidence 34688899999999999887777654 3789999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEEeCC
Q psy9646 196 AKQIGVTNIVVFINKF 211 (211)
Q Consensus 196 ~~~~~~~~~i~~inK~ 211 (211)
+...++| +|+++||+
T Consensus 119 ~~~~~ip-iIvViNKi 133 (599)
T 3cb4_D 119 AMEMDLE-VVPVLNKI 133 (599)
T ss_dssp HHHTTCE-EEEEEECT
T ss_pred HHHCCCC-EEEeeecc
Confidence 9999998 78999996
No 37
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.46 E-value=8.3e-14 Score=122.64 Aligned_cols=89 Identities=27% Similarity=0.419 Sum_probs=67.8
Q ss_pred ccccchhhcccceEEeEeEEEeeeC-----CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHH
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATE-----NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLA 196 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~-----~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~ 196 (211)
.+|..+.|+.||+|+......+.+. .+.++|+|||||.+|..++..+++.+|++++|+|+.+|+..|+.+++..+
T Consensus 42 ~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a 121 (600)
T 2ywe_A 42 LLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKA 121 (600)
T ss_dssp --------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHH
T ss_pred ccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHH
Confidence 4688889999999998776666543 36899999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEEEeCC
Q psy9646 197 KQIGVTNIVVFINKF 211 (211)
Q Consensus 197 ~~~~~~~~i~~inK~ 211 (211)
...++| +|+++||+
T Consensus 122 ~~~~ip-iIvviNKi 135 (600)
T 2ywe_A 122 VEQDLV-IIPVINKI 135 (600)
T ss_dssp HHTTCE-EEEEEECT
T ss_pred HHCCCC-EEEEEecc
Confidence 999999 88999997
No 38
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.46 E-value=5.2e-14 Score=122.59 Aligned_cols=89 Identities=27% Similarity=0.466 Sum_probs=83.3
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
..+..+.|..+|+|+......+.+.+.+++++|||||.+|...+..++..+|++++|+|+..++..++..++..+...++
T Consensus 56 ~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~i 135 (528)
T 3tr5_A 56 TSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHT 135 (528)
T ss_dssp HHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTC
T ss_pred ecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCC
Confidence 45677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
| +|+++||+
T Consensus 136 P-iivviNK~ 144 (528)
T 3tr5_A 136 P-IMTFINKM 144 (528)
T ss_dssp C-EEEEEECT
T ss_pred C-EEEEEeCC
Confidence 8 78999996
No 39
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.45 E-value=1.5e-14 Score=124.90 Aligned_cols=102 Identities=34% Similarity=0.448 Sum_probs=82.7
Q ss_pred hhhhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc
Q psy9646 109 LADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ 188 (211)
Q Consensus 109 ~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~ 188 (211)
+...|++++...+..........+++|.++....+++++.+++|+|||||++|...+..++..+|++++|+|+.+|+++|
T Consensus 12 hvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~q 91 (501)
T 1zo1_I 12 HVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQ 91 (501)
T ss_dssp STTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTT
T ss_pred CCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHH
Confidence 34445555444332222222334678888877778888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 189 TREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 189 ~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.+++.+++..++| +|+++||+
T Consensus 92 T~e~l~~~~~~~vP-iIVviNKi 113 (501)
T 1zo1_I 92 TIEAIQHAKAAQVP-VVVAVNKI 113 (501)
T ss_dssp THHHHHHHHHTTCC-EEEEEECS
T ss_pred HHHHHHHHHhcCce-EEEEEEec
Confidence 99999999999999 88999996
No 40
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.42 E-value=4.2e-13 Score=120.62 Aligned_cols=89 Identities=29% Similarity=0.441 Sum_probs=82.0
Q ss_pred ccccchhhcccceEEeEeEEEeeeCC-------ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHH
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATEN-------RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLL 194 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~-------~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~ 194 (211)
.+|..+.|..|++|+......+.+.+ +.++++|||||.+|..++..++..+|++++|+|+.+++..++..+++
T Consensus 49 ~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~ 128 (704)
T 2rdo_7 49 TMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR 128 (704)
T ss_pred eecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH
Confidence 46777888999999999888888777 89999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEEeCC
Q psy9646 195 LAKQIGVTNIVVFINKF 211 (211)
Q Consensus 195 ~~~~~~~~~~i~~inK~ 211 (211)
++...++| +++++||+
T Consensus 129 ~~~~~~ip-~ilviNKi 144 (704)
T 2rdo_7 129 QANKYKVP-RIAFVNKM 144 (704)
T ss_pred HHHHcCCC-EEEEEeCC
Confidence 99999999 67899996
No 41
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.41 E-value=2.6e-13 Score=118.21 Aligned_cols=88 Identities=25% Similarity=0.440 Sum_probs=71.4
Q ss_pred cccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCC
Q psy9646 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVT 202 (211)
Q Consensus 123 ~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
++..+.|..+|+|+......+.+.+..++++|||||.+|...+..++..+|++++|+|+.+++..+++++++.+...++|
T Consensus 57 ~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip 136 (529)
T 2h5e_A 57 SDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP 136 (529)
T ss_dssp -------------CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC
T ss_pred eccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC
Confidence 56677888999999998889999999999999999999999999999999999999999999999999999999888999
Q ss_pred eEEEEEeCC
Q psy9646 203 NIVVFINKF 211 (211)
Q Consensus 203 ~~i~~inK~ 211 (211)
+++++||+
T Consensus 137 -iivviNK~ 144 (529)
T 2h5e_A 137 -ILTFMNKL 144 (529)
T ss_dssp -EEEEEECT
T ss_pred -EEEEEcCc
Confidence 78999996
No 42
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.40 E-value=3.3e-12 Score=87.69 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=68.9
Q ss_pred CCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecceecceecccCceehhccCCCcccc
Q psy9646 19 DKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEV 98 (211)
Q Consensus 19 ~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v 98 (211)
-.|..+.|-.++..-+ |+++.|+|++|.+++|+.| |.++ ..+.|+||+++++++++|.+||+|++++++... ++
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~-~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I 105 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPS-GIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KV 105 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSS-CEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CC
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCc-eEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-cc
Confidence 3477777766444334 8999999999999999999 8751 378999999999999999999999999999777 89
Q ss_pred cccccccc
Q psy9646 99 NRGLIMAK 106 (211)
Q Consensus 99 ~~G~ii~~ 106 (211)
++|+++..
T Consensus 106 ~~GdVLyv 113 (116)
T 1xe1_A 106 KKGDVLEI 113 (116)
T ss_dssp CTTCEEEE
T ss_pred CCCcEEEE
Confidence 99998754
No 43
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.33 E-value=9.9e-14 Score=120.70 Aligned_cols=104 Identities=32% Similarity=0.327 Sum_probs=84.7
Q ss_pred cchhhhhhhhcccccccccchhhcccceEEeEeEEEeee-CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC
Q psy9646 107 PVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYAT-ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA 185 (211)
Q Consensus 107 ~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~-~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~ 185 (211)
.+.+..|++++...+..........+++|.+..+..+.. .+..+.|+|||||++|...+..++..+|++++|+|+.++.
T Consensus 10 vG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~ 89 (537)
T 3izy_P 10 MGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGV 89 (537)
T ss_dssp EESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCC
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCc
Confidence 344556677766555433344445567777776666665 4568999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 186 MPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++|+.+++.++...++| +|+++||+
T Consensus 90 ~~qt~e~l~~~~~~~vP-iIVViNKi 114 (537)
T 3izy_P 90 MKQTVESIQHAKDAHVP-IVLAINKC 114 (537)
T ss_dssp CHHHHHHHHHHHTTTCC-EEECCBSG
T ss_pred cHHHHHHHHHHHHcCCc-EEEEEecc
Confidence 99999999999999999 88999996
No 44
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.33 E-value=2.5e-12 Score=115.40 Aligned_cols=89 Identities=29% Similarity=0.452 Sum_probs=69.5
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.++..+.|..+++|+......+.+.+.+++++|||||.+|...+..++..+|++++|+|+.++...++..+++.+...++
T Consensus 51 ~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~ 130 (691)
T 1dar_A 51 TMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKV 130 (691)
T ss_dssp ----------------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTC
T ss_pred eccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCC
Confidence 35677788899999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
| +++++||+
T Consensus 131 p-~ivviNKi 139 (691)
T 1dar_A 131 P-RIAFANKM 139 (691)
T ss_dssp C-EEEEEECT
T ss_pred C-EEEEEECC
Confidence 9 77899996
No 45
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.31 E-value=2.6e-12 Score=115.34 Aligned_cols=89 Identities=35% Similarity=0.498 Sum_probs=70.3
Q ss_pred ccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.++..+.|+.+++|+......+.+.+.+++++|||||.+|..++..++..+|++++|+|+.+++..++..+++.+...++
T Consensus 49 ~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~ 128 (693)
T 2xex_A 49 QMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGV 128 (693)
T ss_dssp ---------------CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTC
T ss_pred ecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCC
Confidence 35667788889999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
| +|+++||+
T Consensus 129 p-~ilviNK~ 137 (693)
T 2xex_A 129 P-RIVFVNKM 137 (693)
T ss_dssp C-EEEEEECT
T ss_pred C-EEEEEECC
Confidence 8 77899996
No 46
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.30 E-value=1.9e-12 Score=118.44 Aligned_cols=89 Identities=31% Similarity=0.412 Sum_probs=70.5
Q ss_pred ccccchhhcccceEEeEeEEEeeeC----------------CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC
Q psy9646 122 DIDNAPEEKARGITINVAHVEYATE----------------NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA 185 (211)
Q Consensus 122 ~~~~~~~e~~rg~tv~~~~~~~~~~----------------~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~ 185 (211)
++|..+.|..|++|+......+.+. +..++++|||||.+|..++..++..+|++++|+|+.+++
T Consensus 56 ~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~ 135 (842)
T 1n0u_A 56 FTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 135 (842)
T ss_dssp -----------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBS
T ss_pred eecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCC
Confidence 4677788899999998877666554 678999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 186 MPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..|+..++..+...++| +|+++||+
T Consensus 136 ~~qt~~~~~~~~~~~~p-~ilviNK~ 160 (842)
T 1n0u_A 136 CVQTETVLRQALGERIK-PVVVINKV 160 (842)
T ss_dssp CHHHHHHHHHHHHTTCE-EEEEEECH
T ss_pred CHHHHHHHHHHHHcCCC-eEEEEECC
Confidence 99999999999888998 67899995
No 47
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.23 E-value=1.3e-11 Score=110.47 Aligned_cols=88 Identities=22% Similarity=0.345 Sum_probs=80.9
Q ss_pred cccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCC
Q psy9646 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVT 202 (211)
Q Consensus 123 ~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
.+..+.|..+++++......+.+....++++|||||.+|..++..+++.+|++++|+|+.+++..+++++++.+...++|
T Consensus 49 ~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip 128 (665)
T 2dy1_A 49 TDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP 128 (665)
T ss_dssp SCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC
T ss_pred ccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCC
Confidence 56667788889999888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCC
Q psy9646 203 NIVVFINKF 211 (211)
Q Consensus 203 ~~i~~inK~ 211 (211)
+|+++||+
T Consensus 129 -~ilv~NKi 136 (665)
T 2dy1_A 129 -RMVVVTKL 136 (665)
T ss_dssp -EEEEEECG
T ss_pred -EEEEecCC
Confidence 77899996
No 48
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.23 E-value=3.6e-12 Score=112.33 Aligned_cols=62 Identities=32% Similarity=0.409 Sum_probs=59.0
Q ss_pred eeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 149 HYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 149 ~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+++|+|||||.+|...+..++..+|++++|+|+.+|+++|+.+++.+++..++| +|+++||+
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKi 132 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKI 132 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECG
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEeccc
Confidence 599999999999999998999999999999999999999999999999999999 88999996
No 49
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.22 E-value=1.9e-11 Score=103.26 Aligned_cols=64 Identities=47% Similarity=0.730 Sum_probs=60.2
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-CcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..+.|+|||||++|.+++..+++.+|++++|+|+.++. .+|+++++..+...+.+++|+++||+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~ 139 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKV 139 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECG
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECc
Confidence 67999999999999999999999999999999999997 89999999999999986699999996
No 50
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.19 E-value=9.4e-11 Score=103.28 Aligned_cols=105 Identities=26% Similarity=0.300 Sum_probs=89.4
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc---eecc
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH---KILD 78 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~---~~~~ 78 (211)
+||++|.+.+|.|..+.++||++.|.++++.++.|+++.|+|.+|.+++||.|.++|+++ ..+|+++..++ .+++
T Consensus 173 ~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~--~~~v~~i~~~~~~~~~v~ 250 (600)
T 2ywe_A 173 EILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGK--EYEVTEVGAQTPKMTKFD 250 (600)
T ss_dssp HHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTE--EEECCEEEEESSSEEEES
T ss_pred HHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccc--eEeeecccccCCCceECC
Confidence 588999998998888889999999999999999999999999999999999999999875 67788887654 6889
Q ss_pred eecccCceehhccCC-Ccccccccccccccch
Q psy9646 79 EAQAGDQLGALVKGM-KRDEVNRGLIMAKPVL 109 (211)
Q Consensus 79 ~a~~G~~v~~~l~~~-~~~~v~~G~ii~~~~~ 109 (211)
++.+||.+.+. .++ +..++++|++++....
T Consensus 251 ~~~aGdi~~v~-~gi~~~~~~~~GDtl~~~~~ 281 (600)
T 2ywe_A 251 KLSAGDVGYIA-ASIKDVRDIRIGDTITHAKN 281 (600)
T ss_dssp CEETTCEEEEE-SSCCCTTSSCTTCEEEESSS
T ss_pred EEecCceeeee-ccccchhhccCCCEEEeCCC
Confidence 99999966553 343 4668999999987554
No 51
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.12 E-value=1.4e-10 Score=94.34 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=59.5
Q ss_pred EeeeCCceeEeecCCcccc--------cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 142 EYATENRHYSHTDCPGHAD--------YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~~~~~~iDtPG~~~--------~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
.+..++.++.|+||||+++ |...+..++..+|++++|+|+..+....+..+++.++.. +.| +|+++||+
T Consensus 49 i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~ 127 (301)
T 1wf3_A 49 ILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKL 127 (301)
T ss_dssp EEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECG
T ss_pred EEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECc
Confidence 3456788999999999887 677888999999999999999998888887787888777 788 78999996
No 52
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.08 E-value=5.9e-10 Score=98.28 Aligned_cols=105 Identities=17% Similarity=0.205 Sum_probs=89.0
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc---eecc
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH---KILD 78 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~---~~~~ 78 (211)
+|+++|.+.+|.|..+.++||++.|.++++.++.|++..|+|.+|+++.||++.+.+++. ..+|+++...+ .+++
T Consensus 171 ~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~--~~~v~~i~~~~~~~~~~~ 248 (599)
T 3cb4_D 171 DVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQ--TYNADRLGIFTPKQVDRT 248 (599)
T ss_dssp HHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCC--EEECCEEEEESSSEEECS
T ss_pred hHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEeccccc--eeEEeeeeeccCCceECC
Confidence 588999998998888889999999999999999999999999999999999999999875 66777887653 5789
Q ss_pred eecccCceehhccCC-Ccccccccccccccch
Q psy9646 79 EAQAGDQLGALVKGM-KRDEVNRGLIMAKPVL 109 (211)
Q Consensus 79 ~a~~G~~v~~~l~~~-~~~~v~~G~ii~~~~~ 109 (211)
++.+||.+.+ +.++ +..++++|++++....
T Consensus 249 ~~~aGdi~~~-~~gi~~~~~~~~GDtl~~~~~ 279 (599)
T 3cb4_D 249 ELKCGEVGWL-VCAIKDIHGAPVGDTLTLARN 279 (599)
T ss_dssp EECTTCEEEE-ECCCSSGGGSCTTCEEEESSS
T ss_pred EEcCCCeeEe-eccccccccCccCCEeeecCC
Confidence 9999996554 3344 4668999999987554
No 53
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.08 E-value=1.2e-10 Score=94.96 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=72.8
Q ss_pred hhhhhhcccccccccch-hhcccceEEeEeEEEeeeC-CceeEeecCCcccc----------cHhHHhhhccccceEEEE
Q psy9646 111 DKKLAKVKQYADIDNAP-EEKARGITINVAHVEYATE-NRHYSHTDCPGHAD----------YIKNMITGTSQMDGAILV 178 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~~-~e~~rg~tv~~~~~~~~~~-~~~~~~iDtPG~~~----------~~~~~~~~~~~~d~~~~v 178 (211)
..|++++...+...... .....+.|.......+..+ +.+++|+||||+++ |...+..++..+|++++|
T Consensus 20 nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~V 99 (308)
T 3iev_A 20 NVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFM 99 (308)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEE
Confidence 34555544433322211 2334455555555666677 89999999999854 447788889999999999
Q ss_pred EeccCCCCcchHHH-HHHHHHcCCCeEEEEEeCC
Q psy9646 179 VAATDGAMPQTREH-LLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 179 vd~~~~~~~~~~~~-~~~~~~~~~~~~i~~inK~ 211 (211)
+|+.++...++..+ ++.++..++| +++|+||+
T Consensus 100 vD~~~~~~~~~~~~~~~~l~~~~~p-vilV~NK~ 132 (308)
T 3iev_A 100 IDATEGWRPRDEEIYQNFIKPLNKP-VIVVINKI 132 (308)
T ss_dssp EETTTBSCHHHHHHHHHHTGGGCCC-EEEEEECG
T ss_pred EeCCCCCCchhHHHHHHHHHhcCCC-EEEEEECc
Confidence 99999988888887 7888888888 78999996
No 54
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.99 E-value=2.8e-10 Score=84.35 Aligned_cols=77 Identities=38% Similarity=0.520 Sum_probs=63.0
Q ss_pred eEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 134 ITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 134 ~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+.+.....+...+..+.++||||+++|.......+..+|++++|+|+..+...++.+.+..+...++| +++++||+
T Consensus 41 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~ 117 (178)
T 2lkc_A 41 ITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKM 117 (178)
T ss_dssp SSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETT
T ss_pred eeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECc
Confidence 333444445566778899999999999887777888999999999999988888888888877777888 88999996
No 55
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.98 E-value=3.8e-10 Score=91.64 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=58.6
Q ss_pred EEEeeeCCceeEeecCCccc---------ccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeC
Q psy9646 140 HVEYATENRHYSHTDCPGHA---------DYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210 (211)
Q Consensus 140 ~~~~~~~~~~~~~iDtPG~~---------~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK 210 (211)
...+..++.+++|+||||++ .|...+..++..+|++++|+|+.. +..+++.+++.+...+.| +|+++||
T Consensus 48 ~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P-~ilvlNK 125 (301)
T 1ega_A 48 VGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAP-VILAVNK 125 (301)
T ss_dssp EEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSC-EEEEEES
T ss_pred EEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCC-EEEEEEC
Confidence 34456678899999999998 455667888999999999999988 888888888888777888 7789999
Q ss_pred C
Q psy9646 211 F 211 (211)
Q Consensus 211 ~ 211 (211)
+
T Consensus 126 ~ 126 (301)
T 1ega_A 126 V 126 (301)
T ss_dssp T
T ss_pred c
Confidence 6
No 56
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.97 E-value=3.1e-09 Score=95.53 Aligned_cols=101 Identities=24% Similarity=0.339 Sum_probs=84.6
Q ss_pred hHHHHHhhhCCCCCC--------------------CCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCc
Q psy9646 2 ELLNQIDTYIPQPVR--------------------DLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGR 61 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~--------------------~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~ 61 (211)
.||++|.+++|.|.. +.++||.+.|..++..++.|++..|||.+|+++.|++|...+.++
T Consensus 277 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~ 356 (704)
T 2rdo_7 277 AMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAA 356 (704)
T ss_pred HHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCc
Confidence 589999999987743 156899999999999999999999999999999999999877764
Q ss_pred eeeEEEEEEEec----ceecceecccCceehhccCCCcccccccccccccc
Q psy9646 62 QFKTTVTGIEMF----HKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPV 108 (211)
Q Consensus 62 ~~~~~v~~i~~~----~~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~ 108 (211)
+.+|.++... ..++++|.|||++++. + ..+++.|++++...
T Consensus 357 --~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--g--l~~~~~GdTl~~~~ 401 (704)
T 2rdo_7 357 --RERFGRIVQMHANKREEIKEVRAGDIAAAI--G--LKDVTTGDTLCDPD 401 (704)
T ss_pred --EEEeceEEEEeCCCceEcceeCCCCEEEEe--C--cccCccCCEEeCCC
Confidence 6788888754 3689999999999983 3 44678899998644
No 57
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.95 E-value=9.1e-10 Score=95.93 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=78.7
Q ss_pred hHHHHHhhhCCCCCCC---------CCCCeeEEEeeEEe---ecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEE
Q psy9646 2 ELLNQIDTYIPQPVRD---------LDKPFYLPVEHTYS---IPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTG 69 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~---------~~~p~~~~v~~~~~---~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~ 69 (211)
+||++|.+++|.|... .+.||...|..+.. .+++|++..|||.+|+++.||+|...+.++ +.+|++
T Consensus 267 ~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~--~~~v~~ 344 (529)
T 2h5e_A 267 HMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAK--DVVISD 344 (529)
T ss_dssp HHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEEESCEETTCEEEETTTTE--EEECSC
T ss_pred HHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEecCeEcCCCEEEEeeCCC--EEEece
Confidence 5899999999877532 14677777665543 356899999999999999999999999875 788999
Q ss_pred EEec----ceecceecccCceehhccCCCcccccccccccccc
Q psy9646 70 IEMF----HKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPV 108 (211)
Q Consensus 70 i~~~----~~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~ 108 (211)
+..+ .+++++|.|||++++. +..+++.|++++...
T Consensus 345 i~~~~g~~~~~v~~a~aGdiv~i~----~l~~~~~Gdtl~~~~ 383 (529)
T 2h5e_A 345 ALTFMAGDRSHVEEAYPGDILGLH----NHGTIQIGDTFTQGE 383 (529)
T ss_dssp EECCCC-----CCEECTTCEEEEC----CSSCCCTTCEEESSC
T ss_pred eeEEeCCCceEcceECCCCEEEEe----ccCCCccCCEeecCC
Confidence 9865 4689999999999882 345788899998754
No 58
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.92 E-value=2.4e-09 Score=91.26 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=63.7
Q ss_pred hcccceEEeEeEEEeeeCCceeEeecCCcccc---------cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHc
Q psy9646 129 EKARGITINVAHVEYATENRHYSHTDCPGHAD---------YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQI 199 (211)
Q Consensus 129 e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~---------~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~ 199 (211)
+...|.|.+..+..+++.+.++.++||||... +...+..++..+|++++|+|+..+....+..+.+.+...
T Consensus 30 ~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~ 109 (439)
T 1mky_A 30 EDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKS 109 (439)
T ss_dssp --------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH
T ss_pred cCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc
Confidence 34557777777888888999999999999764 345567788999999999999999988888888888888
Q ss_pred CCCeEEEEEeCC
Q psy9646 200 GVTNIVVFINKF 211 (211)
Q Consensus 200 ~~~~~i~~inK~ 211 (211)
+.| +++|+||+
T Consensus 110 ~~p-~ilv~NK~ 120 (439)
T 1mky_A 110 TVD-TILVANKA 120 (439)
T ss_dssp TCC-EEEEEESC
T ss_pred CCC-EEEEEeCC
Confidence 888 78999996
No 59
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.91 E-value=3.3e-09 Score=81.64 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=70.7
Q ss_pred hhhhhhhccccccccc--chhhcccceEEeEeEEEee-eCCceeEeecCCcccc-------------cHhHHhhhccccc
Q psy9646 110 ADKKLAKVKQYADIDN--APEEKARGITINVAHVEYA-TENRHYSHTDCPGHAD-------------YIKNMITGTSQMD 173 (211)
Q Consensus 110 ~~~~~~~f~~~i~~~~--~~~e~~rg~tv~~~~~~~~-~~~~~~~~iDtPG~~~-------------~~~~~~~~~~~~d 173 (211)
...|++++...+.... .......+.+....+..+. ..+..+.++||||+.+ +....+.....+|
T Consensus 38 ~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 117 (223)
T 4dhe_A 38 SNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLC 117 (223)
T ss_dssp CHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEE
T ss_pred CCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcC
Confidence 4456666555443222 1233344556665555555 5568899999999632 3445566667789
Q ss_pred eEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 174 GAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 174 ~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++++|+|+.++....+..+++.+...++| +++|+||+
T Consensus 118 ~vi~v~d~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~ 154 (223)
T 4dhe_A 118 GMILMMDARRPLTELDRRMIEWFAPTGKP-IHSLLTKC 154 (223)
T ss_dssp EEEEEEETTSCCCHHHHHHHHHHGGGCCC-EEEEEECG
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEecc
Confidence 99999999998888888888888888888 88999995
No 60
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.89 E-value=7e-09 Score=75.34 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=60.2
Q ss_pred cceEEeEeEEEeeeCCceeEeecCCcccc-------cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeE
Q psy9646 132 RGITINVAHVEYATENRHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNI 204 (211)
Q Consensus 132 rg~tv~~~~~~~~~~~~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~ 204 (211)
.+.+.+.....+...+..+.++||||+.. +.......+..+|++++++|+..+.......+.+.+...+.| +
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ 111 (161)
T 2dyk_A 33 PGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-V 111 (161)
T ss_dssp -----CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-E
T ss_pred CCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-E
Confidence 34445555556666778999999999887 345566778899999999999988777777788888878888 8
Q ss_pred EEEEeCC
Q psy9646 205 VVFINKF 211 (211)
Q Consensus 205 i~~inK~ 211 (211)
++++||+
T Consensus 112 ilv~nK~ 118 (161)
T 2dyk_A 112 ILVATKV 118 (161)
T ss_dssp EEEEECC
T ss_pred EEEEECc
Confidence 8999996
No 61
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.89 E-value=7.4e-09 Score=92.94 Aligned_cols=101 Identities=25% Similarity=0.306 Sum_probs=83.4
Q ss_pred hHHHHHhhhCCCCCC------------------CCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCcee
Q psy9646 2 ELLNQIDTYIPQPVR------------------DLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQF 63 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~------------------~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~ 63 (211)
+||++|.+++|.|.. +.++||.+.|..++..++.|++..|||.+|+++.||+|.....++
T Consensus 271 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~-- 348 (691)
T 1dar_A 271 LLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGR-- 348 (691)
T ss_dssp HHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEESSCEEEETTTTE--
T ss_pred HHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecCCCc--
Confidence 589999999987754 257899999999999999999999999999999999999876653
Q ss_pred eEEEEEEEecc----eecceecccCceehhccCCCcccccccccccccc
Q psy9646 64 KTTVTGIEMFH----KILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPV 108 (211)
Q Consensus 64 ~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~ 108 (211)
+.+|..+...+ .++++|.|||++++. + ..+...|++++...
T Consensus 349 ~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~~~Gdtl~~~~ 393 (691)
T 1dar_A 349 KERVARLLRMHANHREEVEELKAGDLGAVV--G--LKETITGDTLVGED 393 (691)
T ss_dssp EEECCEEEEECSSCEEEESEEETTCEEEEE--C--CSSCCTTCEEEETT
T ss_pred EEEEceEEEEeCCCceEcceecCCCEEEEe--C--cccCccCCEEecCC
Confidence 56777776543 689999999999983 3 34567899988644
No 62
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.88 E-value=1.4e-09 Score=92.60 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=59.9
Q ss_pred hcccceEEeEeEEEeeeCCceeEeecCCccc--------ccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC
Q psy9646 129 EKARGITINVAHVEYATENRHYSHTDCPGHA--------DYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG 200 (211)
Q Consensus 129 e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~--------~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~ 200 (211)
+...|.|.+..+...++.+..+.++||||+. .|...+..++..+|++++|+|+..+....+.++++.+...+
T Consensus 32 ~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~ 111 (436)
T 2hjg_A 32 EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTK 111 (436)
T ss_dssp ---------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCC
T ss_pred cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcC
Confidence 3455777777788888888999999999986 56677788899999999999999999988888888888888
Q ss_pred CCeEEEEEeCC
Q psy9646 201 VTNIVVFINKF 211 (211)
Q Consensus 201 ~~~~i~~inK~ 211 (211)
.| +++++||+
T Consensus 112 ~p-vilv~NK~ 121 (436)
T 2hjg_A 112 KP-VVLAVNKL 121 (436)
T ss_dssp SC-EEEEEECC
T ss_pred CC-EEEEEECc
Confidence 88 88999996
No 63
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.87 E-value=2.3e-09 Score=93.33 Aligned_cols=102 Identities=19% Similarity=0.140 Sum_probs=81.0
Q ss_pred hHHHHHhhhC--CCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc-eecc
Q psy9646 2 ELLNQIDTYI--PQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH-KILD 78 (211)
Q Consensus 2 ~ll~~l~~~i--~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~-~~~~ 78 (211)
+|++.|.... +.+..+.+.|++++|.+++..++.|++.+|+|.+|.+++||.+. +.. ..++|++++.++ ++++
T Consensus 157 eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~--~g~--~~~kVr~i~~~~g~~v~ 232 (537)
T 3izy_P 157 ALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILV--AGK--SWAKVRLMFDENGRAVN 232 (537)
T ss_dssp HHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEEC--CSS--CCEEEEEEEECCCCCSC
T ss_pred hHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEE--eCC--ceEEEEEEEcCCCCCCc
Confidence 3666666543 23555678899999999999999999999999999999999873 332 368999999886 7999
Q ss_pred eecccCceehhccCCCcccccccccccccchh
Q psy9646 79 EAQAGDQLGALVKGMKRDEVNRGLIMAKPVLA 110 (211)
Q Consensus 79 ~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~~ 110 (211)
+|.||++|++. +++ ....+|++++....+
T Consensus 233 ~A~~G~~V~i~--g~~-~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 233 EAYPSMPVGII--GWR-DLPSAGDEILEVESE 261 (537)
T ss_dssp CSCCSTTCCCC--SSE-EEEEEESSCCSCCSS
T ss_pred EEcCCCEEEEE--CCC-CCCCCCCEEEecCCh
Confidence 99999999873 444 335999999876544
No 64
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.87 E-value=3.7e-09 Score=89.60 Aligned_cols=98 Identities=18% Similarity=0.169 Sum_probs=68.5
Q ss_pred hhhhhhcccccccccc-hhhcccceEEeEeEEEeeeCCc-eeEeecCCccccc-------HhHHhhhccccceEEEEEec
Q psy9646 111 DKKLAKVKQYADIDNA-PEEKARGITINVAHVEYATENR-HYSHTDCPGHADY-------IKNMITGTSQMDGAILVVAA 181 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~-~~e~~rg~tv~~~~~~~~~~~~-~~~~iDtPG~~~~-------~~~~~~~~~~~d~~~~vvd~ 181 (211)
..|++++..++..... ..+..++.|.+..+..++..+. .+.++||||+.+| .+.+...+..+|++++|+|+
T Consensus 44 ~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~ 123 (423)
T 3qq5_A 44 NVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS 123 (423)
T ss_dssp STTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS
T ss_pred CCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC
Confidence 4455665554432222 3445667777777777777665 8999999999876 34467788899999999998
Q ss_pred cCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 182 TDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+...++..+++.++..++| +|+|+||+
T Consensus 124 --~~~~~~~~~l~~l~~~~~p-iIvV~NK~ 150 (423)
T 3qq5_A 124 --APTPYEDDVVNLFKEMEIP-FVVVVNKI 150 (423)
T ss_dssp --SCCHHHHHHHHHHHHTTCC-EEEECCCC
T ss_pred --CChHHHHHHHHHHHhcCCC-EEEEEeCc
Confidence 7788889999999999998 88999996
No 65
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.86 E-value=1.6e-09 Score=96.80 Aligned_cols=100 Identities=26% Similarity=0.249 Sum_probs=82.9
Q ss_pred hHHHHHhhhCCCCCCC-CCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEec----cee
Q psy9646 2 ELLNQIDTYIPQPVRD-LDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMF----HKI 76 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~-~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~----~~~ 76 (211)
+||++|.+++|.|... .++||.+.|..++..++.|++..|||.+|+++.||+|...+ ...+|++|... ..+
T Consensus 263 ~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~----~~~~v~~l~~~~g~~~~~ 338 (665)
T 2dy1_A 263 PLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA----GQVRLPHLYVPMGKDLLE 338 (665)
T ss_dssp HHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTT----SCEEESSEEEEETTEEEE
T ss_pred HHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEcCC----CeEEEeEEEEEeCCCeeE
Confidence 5899999988877543 67899999999999999999999999999999999998766 25677787653 368
Q ss_pred cceecccCceehhccCCCcccccccccccccch
Q psy9646 77 LDEAQAGDQLGALVKGMKRDEVNRGLIMAKPVL 109 (211)
Q Consensus 77 ~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~~ 109 (211)
+++|.|||++++. +..++.+|++++....
T Consensus 339 v~~a~aG~iv~i~----gl~~~~~Gdtl~~~~~ 367 (665)
T 2dy1_A 339 VEEAEAGFVLGVP----KAEGLHRGMVLWQGEK 367 (665)
T ss_dssp ESCEETTCEEEES----SCTTCCTTCEEESSSC
T ss_pred CCEECCCCEEEEe----CCccCccCCEEecCCC
Confidence 9999999999983 3346789999986443
No 66
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.86 E-value=1.6e-09 Score=92.40 Aligned_cols=101 Identities=13% Similarity=0.232 Sum_probs=68.8
Q ss_pred hhhhhhhcccccccccc-hhhcccceEEeEeEEEeeeCCceeEeecCCcccc----------cHh-HHhhhccccceEEE
Q psy9646 110 ADKKLAKVKQYADIDNA-PEEKARGITINVAHVEYATENRHYSHTDCPGHAD----------YIK-NMITGTSQMDGAIL 177 (211)
Q Consensus 110 ~~~~~~~f~~~i~~~~~-~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~----------~~~-~~~~~~~~~d~~~~ 177 (211)
+..|++++...+..... ..+...+.|.+.....++..+..+.++||||+.+ |.. ....++..+|++++
T Consensus 184 ~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ll 263 (436)
T 2hjg_A 184 PNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAV 263 (436)
T ss_dssp TTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEE
Confidence 44556665544432221 1334456777777777888888999999999843 321 24467889999999
Q ss_pred EEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 178 VVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 178 vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+|+.++...++.+++..+...+.| +|+|+||+
T Consensus 264 v~D~~~~~s~~~~~~~~~~~~~~~~-iiiv~NK~ 296 (436)
T 2hjg_A 264 VLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKW 296 (436)
T ss_dssp EEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECG
T ss_pred EEcCCcCCcHHHHHHHHHHHHcCCc-EEEEEECc
Confidence 9999999999999998888888887 88999995
No 67
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.82 E-value=1.1e-08 Score=91.88 Aligned_cols=101 Identities=20% Similarity=0.278 Sum_probs=83.3
Q ss_pred hHHHHHhhhCCCCCC--------------------CCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCc
Q psy9646 2 ELLNQIDTYIPQPVR--------------------DLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGR 61 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~--------------------~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~ 61 (211)
.||++|..++|.|.. +.++||.+.|..++..++.|++..|||.+|+++.|++|.....+
T Consensus 269 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~- 347 (693)
T 2xex_A 269 LMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKG- 347 (693)
T ss_dssp HHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTT-
T ss_pred HHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecCCC-
Confidence 589999999987743 25789999999999999999999999999999999999976554
Q ss_pred eeeEEEEEEEecc----eecceecccCceehhccCCCcccccccccccccc
Q psy9646 62 QFKTTVTGIEMFH----KILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPV 108 (211)
Q Consensus 62 ~~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~ 108 (211)
.+.+|.++...+ .++++|.|||++++. + ..+...|++++...
T Consensus 348 -~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~~~GdTl~~~~ 393 (693)
T 2xex_A 348 -KRERVGRLLQMHANSRQEIDTVYSGDIAAAV--G--LKDTGTGDTLCGEK 393 (693)
T ss_dssp -EEEEECCEEEECSSCEEECSEEETTCEEEEE--S--CSSCCTTCEEEETT
T ss_pred -ceEEeceEEEEeCCCceEccccCcCCEEEEe--C--cccCccCCEEecCC
Confidence 367788886553 689999999999983 3 34567898887643
No 68
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.81 E-value=2.9e-09 Score=91.20 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=65.8
Q ss_pred cccceEEeEeEEEeeeCCceeEeecCCc--------ccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC
Q psy9646 130 KARGITINVAHVEYATENRHYSHTDCPG--------HADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV 201 (211)
Q Consensus 130 ~~rg~tv~~~~~~~~~~~~~~~~iDtPG--------~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~ 201 (211)
...|.|.+..+...++.+..+.++|||| ++.+...+..++..+|++++|+|+..+....+.++++.+...+.
T Consensus 53 ~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~ 132 (456)
T 4dcu_A 53 DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKK 132 (456)
T ss_dssp --------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCS
T ss_pred CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCC
Confidence 3457777777788888889999999999 66777888889999999999999999999999999999988888
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
| +++|+||+
T Consensus 133 p-vilV~NK~ 141 (456)
T 4dcu_A 133 P-VVLAVNKL 141 (456)
T ss_dssp C-EEEEEECC
T ss_pred C-EEEEEECc
Confidence 8 88999996
No 69
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.78 E-value=1.3e-08 Score=80.52 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=56.1
Q ss_pred eEEeEeEEEeeeCCceeEeecCCccccc-----------HhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHc---
Q psy9646 134 ITINVAHVEYATENRHYSHTDCPGHADY-----------IKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQI--- 199 (211)
Q Consensus 134 ~tv~~~~~~~~~~~~~~~~iDtPG~~~~-----------~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~--- 199 (211)
.|.......+.+.+.++.++||||+.++ .+.+..++..+|++++|+|+.. +..++..+++.+...
T Consensus 57 ~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~ 135 (260)
T 2xtp_A 57 LTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGE 135 (260)
T ss_dssp CCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCG
T ss_pred eeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCc
Confidence 4555555566778899999999998765 3344557889999999999975 666777777777665
Q ss_pred --CCCeEEEEEe-CC
Q psy9646 200 --GVTNIVVFIN-KF 211 (211)
Q Consensus 200 --~~~~~i~~in-K~ 211 (211)
+.| .|+++| |+
T Consensus 136 ~~~~~-~i~vv~nK~ 149 (260)
T 2xtp_A 136 DAMGH-TIVLFTHKE 149 (260)
T ss_dssp GGGGG-EEEEEECGG
T ss_pred hhhcc-EEEEEEccc
Confidence 567 456666 85
No 70
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.74 E-value=1.1e-08 Score=81.95 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=66.8
Q ss_pred hhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHh------------HHhhhccccceEEEE
Q psy9646 111 DKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIK------------NMITGTSQMDGAILV 178 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~------------~~~~~~~~~d~~~~v 178 (211)
..|++++...+.-.........+.|++.....+...+..+.++||||+.++.. ..+.....+|++++|
T Consensus 13 n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~V 92 (274)
T 3i8s_A 13 NSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINV 92 (274)
T ss_dssp TSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEE
Confidence 34555544433222222334456777777788888888999999999887641 122233789999999
Q ss_pred EeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 179 VAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 179 vd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+.. ......+...+...++| +++|+||+
T Consensus 93 vD~~~--~~~~~~~~~~l~~~~~p-~ivv~NK~ 122 (274)
T 3i8s_A 93 VDASN--LERNLYLTLQLLELGIP-CIVALNML 122 (274)
T ss_dssp EEGGG--HHHHHHHHHHHHHHTCC-EEEEEECH
T ss_pred ecCCC--hHHHHHHHHHHHhcCCC-EEEEEECc
Confidence 99976 23445566777788998 88999995
No 71
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.73 E-value=7.4e-09 Score=88.67 Aligned_cols=101 Identities=13% Similarity=0.237 Sum_probs=70.3
Q ss_pred hhhhhhhcccccccc-cchhhcccceEEeEeEEEeeeCCceeEeecCCc----------ccccHh-HHhhhccccceEEE
Q psy9646 110 ADKKLAKVKQYADID-NAPEEKARGITINVAHVEYATENRHYSHTDCPG----------HADYIK-NMITGTSQMDGAIL 177 (211)
Q Consensus 110 ~~~~~~~f~~~i~~~-~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG----------~~~~~~-~~~~~~~~~d~~~~ 177 (211)
+..|++++...+... ........+++.+.....++..+..+.++|||| ++.|.. ....++..+|++++
T Consensus 204 ~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ll 283 (456)
T 4dcu_A 204 PNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAV 283 (456)
T ss_dssp TTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEE
Confidence 344555554433211 122333445666666667777888999999999 444543 34567889999999
Q ss_pred EEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 178 VVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 178 vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+|+.++...++.+++..+...+.| +|+|+||+
T Consensus 284 viD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~ 316 (456)
T 4dcu_A 284 VLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKW 316 (456)
T ss_dssp EEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECG
T ss_pred EEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEECh
Confidence 9999999999999999999999988 88999996
No 72
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.72 E-value=1.8e-08 Score=87.73 Aligned_cols=99 Identities=21% Similarity=0.280 Sum_probs=79.9
Q ss_pred hHHHHHhhhCCCCCCC---------CCCCeeEEEeeEEe--ec-CCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEE
Q psy9646 2 ELLNQIDTYIPQPVRD---------LDKPFYLPVEHTYS--IP-GRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTG 69 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~---------~~~p~~~~v~~~~~--~~-~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~ 69 (211)
+||++|.+.+|.|... .+.||...|..+.. .+ ++|++..+||.+|+++.|+.|...+.++ +.+|.+
T Consensus 266 ~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g~~v~~~~~~~--~~rv~~ 343 (528)
T 3tr5_A 266 ELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMKAYHVRLKK--EIQINN 343 (528)
T ss_dssp HHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEETTEEEEETTTTE--EEEESS
T ss_pred HHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEcCCCEEEecCCCc--eEEEee
Confidence 5899999988877532 25789998888764 45 8999999999999999999999988874 778888
Q ss_pred EEec----ceecceecccCceehhccCCCcccccccccccc
Q psy9646 70 IEMF----HKILDEAQAGDQLGALVKGMKRDEVNRGLIMAK 106 (211)
Q Consensus 70 i~~~----~~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~ 106 (211)
+... ..++++|.|||++++ .+..+++.|++++.
T Consensus 344 ~~~~~~~~~~~v~~a~aGdI~~~----~~l~~~~~GDtl~~ 380 (528)
T 3tr5_A 344 ALTFMAGKRENAEEAWPGDIIGL----HNHGTIQIGDTFTQ 380 (528)
T ss_dssp CBCCBTTCSSCCSEECTTCEEEE----EESSSCCTTCEEES
T ss_pred eEEEeCCCeeECCEECCCCEEEE----cCCCCCccCCEEcC
Confidence 8764 358999999999987 23456789999986
No 73
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.71 E-value=1.5e-08 Score=80.29 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=65.8
Q ss_pred hhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHh------------HHhhhccccceEEEE
Q psy9646 111 DKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIK------------NMITGTSQMDGAILV 178 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~------------~~~~~~~~~d~~~~v 178 (211)
..|++++...+.-.........+.|++.....+...+..+.++||||+..+.. ..+.....+|++++|
T Consensus 11 n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~V 90 (256)
T 3iby_A 11 NCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINV 90 (256)
T ss_dssp TSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEE
T ss_pred CCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEE
Confidence 34455544433222222333456777777788888888999999999887643 112222789999999
Q ss_pred EeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 179 VAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 179 vd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+.. ......+..++...++| +++++||+
T Consensus 91 vDas~--~~~~~~l~~~l~~~~~p-vilv~NK~ 120 (256)
T 3iby_A 91 IDACH--LERHLYLTSQLFELGKP-VVVALNMM 120 (256)
T ss_dssp EEGGG--HHHHHHHHHHHTTSCSC-EEEEEECH
T ss_pred eeCCC--chhHHHHHHHHHHcCCC-EEEEEECh
Confidence 99976 23344566677778888 88999995
No 74
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.66 E-value=2.5e-08 Score=78.54 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=57.1
Q ss_pred eEEeEeEEEeeeCCceeEeecCCcc--------cccHhHHhhhc----cccceEEEEEeccCCCCcchHHHHHHHHHc--
Q psy9646 134 ITINVAHVEYATENRHYSHTDCPGH--------ADYIKNMITGT----SQMDGAILVVAATDGAMPQTREHLLLAKQI-- 199 (211)
Q Consensus 134 ~tv~~~~~~~~~~~~~~~~iDtPG~--------~~~~~~~~~~~----~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~-- 199 (211)
.|.......+...+.++.++||||. +++.+.+..++ ..+|++|+|+|+.. ....+...++.+...
T Consensus 56 ~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~ 134 (247)
T 3lxw_A 56 VTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFG 134 (247)
T ss_dssp -CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHC
T ss_pred ccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhC
Confidence 4444445566778899999999997 55666666665 89999999999974 666677777777664
Q ss_pred ----CCCeEEEEEeCC
Q psy9646 200 ----GVTNIVVFINKF 211 (211)
Q Consensus 200 ----~~~~~i~~inK~ 211 (211)
+.| +|++.||+
T Consensus 135 ~~~~~~~-iilv~nK~ 149 (247)
T 3lxw_A 135 EDVLKWM-VIVFTRKE 149 (247)
T ss_dssp GGGGGGE-EEEEECGG
T ss_pred hhhhccE-EEEEEchH
Confidence 566 88899995
No 75
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.62 E-value=4.9e-08 Score=73.39 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=48.1
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHH-cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQ-IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~-~~~~~~i~~inK~ 211 (211)
..+.++||||+..|.......+..+|++++|+|+..+...+. +.++..+.. .+.| +++|+||+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p-iilv~NK~ 157 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI-IILVANKI 157 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCE-EEEEEECT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCc-EEEEEECC
Confidence 678999999999998888888999999999999977643222 233444433 4555 88999996
No 76
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.62 E-value=8.2e-08 Score=71.13 Aligned_cols=78 Identities=19% Similarity=0.129 Sum_probs=53.8
Q ss_pred ceEEeEeEEEeeeCCceeEeecCCccccc--------HhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHc---CC
Q psy9646 133 GITINVAHVEYATENRHYSHTDCPGHADY--------IKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQI---GV 201 (211)
Q Consensus 133 g~tv~~~~~~~~~~~~~~~~iDtPG~~~~--------~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~---~~ 201 (211)
+.+.+.....+...+..+.++||||++++ +..++..+..+|++++|+|+..........++..+... ++
T Consensus 37 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~ 116 (172)
T 2gj8_A 37 GTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKL 116 (172)
T ss_dssp TCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTC
T ss_pred CceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCC
Confidence 33444334455566778899999998753 12244567899999999999877665555555555443 57
Q ss_pred CeEEEEEeCC
Q psy9646 202 TNIVVFINKF 211 (211)
Q Consensus 202 ~~~i~~inK~ 211 (211)
| +++|+||+
T Consensus 117 p-~ilv~NK~ 125 (172)
T 2gj8_A 117 P-ITVVRNKA 125 (172)
T ss_dssp C-EEEEEECH
T ss_pred C-EEEEEECc
Confidence 7 88999995
No 77
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.61 E-value=5.9e-08 Score=71.80 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=48.6
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
..++.++||||+..|.......+..+|++++|+|+..... .....++..+... ++| +++++||+
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~i~v~nK~ 127 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKS 127 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECC
Confidence 4578999999999998888888899999999999876543 2234444555443 555 88999996
No 78
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.60 E-value=7e-08 Score=76.93 Aligned_cols=98 Identities=13% Similarity=0.053 Sum_probs=66.2
Q ss_pred hhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHh--------HHhhhccccceEEEEEecc
Q psy9646 111 DKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIK--------NMITGTSQMDGAILVVAAT 182 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~--------~~~~~~~~~d~~~~vvd~~ 182 (211)
..|++++...+...........+.+++.....+...+..+.++||||+..|.. ..+.....+|++++|+|+.
T Consensus 13 g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~ 92 (271)
T 3k53_A 13 NVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDST 92 (271)
T ss_dssp SSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGG
T ss_pred CCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCC
Confidence 34445544333222223334456777777778888888999999999887643 2223336799999999997
Q ss_pred CCCCcchHHHHHHHHHcC-CCeEEEEEeCC
Q psy9646 183 DGAMPQTREHLLLAKQIG-VTNIVVFINKF 211 (211)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~-~~~~i~~inK~ 211 (211)
.. .....++..+...+ .| +++++||+
T Consensus 93 ~~--~~~~~~~~~~~~~~~~p-~ilv~NK~ 119 (271)
T 3k53_A 93 CL--MRNLFLTLELFEMEVKN-IILVLNKF 119 (271)
T ss_dssp GH--HHHHHHHHHHHHTTCCS-EEEEEECH
T ss_pred cc--hhhHHHHHHHHhcCCCC-EEEEEECh
Confidence 75 34445566667777 77 88999995
No 79
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.60 E-value=6.9e-08 Score=84.45 Aligned_cols=101 Identities=21% Similarity=0.298 Sum_probs=77.8
Q ss_pred hHHHHHhhhCCCCCC---------CCCCCeeEEEeeEEee---cCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEE
Q psy9646 2 ELLNQIDTYIPQPVR---------DLDKPFYLPVEHTYSI---PGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTG 69 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~---------~~~~p~~~~v~~~~~~---~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~ 69 (211)
+||+++.+++|.|.. +.+.||...|..++.. ++.|++..+||.+|+++.|++|.....++ +.++..
T Consensus 284 ~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~--~~rv~~ 361 (548)
T 3vqt_A 284 EMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGK--DVTVAN 361 (548)
T ss_dssp HHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESCEETTCEEEETTTTE--EEECTT
T ss_pred HHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecceecCCCEEEeecccc--ccccch
Confidence 589999999987742 2367899988888765 68999999999999999999999876654 566666
Q ss_pred EEecc----eecceecccCceehhccCCCcccccccccccccc
Q psy9646 70 IEMFH----KILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPV 108 (211)
Q Consensus 70 i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~ 108 (211)
+.... .++++|.|||++++ .+..+...|++++...
T Consensus 362 l~~~~g~~~~~v~~a~AGdIvai----~gl~~~~~GDTl~~~~ 400 (548)
T 3vqt_A 362 ATIFMAQDRTGVEEAFPGDIIGI----PNHGTIKIGDTFTESK 400 (548)
T ss_dssp CEECCCSSCCSSCEECTTCEEEE----ECSSCCCTTCEEESSS
T ss_pred hhhhccccccccCEEecCCEEEe----cCCccCccCCEecCCC
Confidence 66543 57999999999987 3455788999998654
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.60 E-value=9.8e-08 Score=71.76 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=53.8
Q ss_pred eEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc-----------CCCeEEE
Q psy9646 139 AHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI-----------GVTNIVV 206 (211)
Q Consensus 139 ~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~-----------~~~~~i~ 206 (211)
....+......+.++||||+++|.......+..+|++++|+|+.+... ......+..+... ++| +|+
T Consensus 54 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iil 132 (199)
T 4bas_A 54 NVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLF 132 (199)
T ss_dssp EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEE
T ss_pred eEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-EEE
Confidence 344556778899999999999998888888999999999999986642 2222333333332 777 889
Q ss_pred EEeCC
Q psy9646 207 FINKF 211 (211)
Q Consensus 207 ~inK~ 211 (211)
|+||+
T Consensus 133 v~NK~ 137 (199)
T 4bas_A 133 FANKM 137 (199)
T ss_dssp EEECT
T ss_pred EEECc
Confidence 99996
No 81
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.59 E-value=5.5e-08 Score=71.83 Aligned_cols=100 Identities=13% Similarity=0.009 Sum_probs=61.7
Q ss_pred hhhhhhcccccccccchhhcccceEEeEeEEEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc
Q psy9646 111 DKKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ 188 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~ 188 (211)
..|++++...+.......+.....+.+.....+...+ ..+.++||||++++.......+..+|++++|+|+.......
T Consensus 19 ~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 98 (181)
T 3tw8_B 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFV 98 (181)
T ss_dssp TSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHH
Confidence 3445555444433333333334444455455555555 67889999999999888888889999999999997653222
Q ss_pred h-HHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 189 T-REHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 189 ~-~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
. ..++..+... ++| +++|+||+
T Consensus 99 ~~~~~~~~~~~~~~~~p-~ilv~nK~ 123 (181)
T 3tw8_B 99 NVKRWLHEINQNCDDVC-RILVGNKN 123 (181)
T ss_dssp HHHHHHHHHHHHCTTSE-EEEEEECT
T ss_pred HHHHHHHHHHHhCCCCC-EEEEEECC
Confidence 2 2233333332 355 78999996
No 82
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.59 E-value=8.7e-08 Score=75.99 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=64.5
Q ss_pred hhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccccHh--------HHhhhccccceEEEEEecc
Q psy9646 111 DKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIK--------NMITGTSQMDGAILVVAAT 182 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~--------~~~~~~~~~d~~~~vvd~~ 182 (211)
..|++++...+...........|.|+......+...+..+.++||||+..|.. ..+.....+|++++|+|+.
T Consensus 15 nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t 94 (258)
T 3a1s_A 15 NVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSV 94 (258)
T ss_dssp TSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETT
T ss_pred CCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCC
Confidence 34455544333222222233457777777777888888999999999887642 1111126899999999987
Q ss_pred CCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 183 DGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.. .....++..+...++| +++++||+
T Consensus 95 ~~--~~~~~~~~~l~~~~~p-vilv~NK~ 120 (258)
T 3a1s_A 95 NP--EQSLYLLLEILEMEKK-VILAMTAI 120 (258)
T ss_dssp SC--HHHHHHHHHHHTTTCC-EEEEEECH
T ss_pred ch--hhHHHHHHHHHhcCCC-EEEEEECc
Confidence 63 2334456667778888 88999995
No 83
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.59 E-value=1.1e-07 Score=83.88 Aligned_cols=105 Identities=19% Similarity=0.143 Sum_probs=79.9
Q ss_pred hHHHHHhhhCCCC-----CCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEec---
Q psy9646 2 ELLNQIDTYIPQP-----VRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMF--- 73 (211)
Q Consensus 2 ~ll~~l~~~i~~p-----~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~--- 73 (211)
+|+++|....+.| ..+.++|++++|.+++..++.|+++.|+|.+|++++||.+.+.|.+....++|++|...
T Consensus 207 eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~ 286 (594)
T 1g7s_A 207 ELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPL 286 (594)
T ss_dssp HHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCC
T ss_pred hHHHHHHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEecccc
Confidence 4666666543311 22457899999999999999999999999999999999999998875456789999753
Q ss_pred ---------ceecceec--ccCceehhccCCCcccccccccccccchh
Q psy9646 74 ---------HKILDEAQ--AGDQLGALVKGMKRDEVNRGLIMAKPVLA 110 (211)
Q Consensus 74 ---------~~~~~~a~--~G~~v~~~l~~~~~~~v~~G~ii~~~~~~ 110 (211)
..++++|. +|+.+.+ . +..++..|+.++....+
T Consensus 287 ~elr~~~~~~~~v~ea~~~aG~~v~~--~--~l~~~~~Gd~l~~~~~~ 330 (594)
T 1g7s_A 287 EEMRESRKKFQKVDEVVAAAGIKIVA--P--GIDDVMAGSPLRVVTDP 330 (594)
T ss_dssp C----CCCSEEECSEEESSEEEEEEC--S--SCTTBCTTCEEEECSSH
T ss_pred chhhhccCCceEccEEcCCCCcEEEE--c--ccCCCCCCCEEEecCCH
Confidence 24677887 8887765 2 33466889999875543
No 84
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.58 E-value=1.2e-07 Score=70.75 Aligned_cols=63 Identities=17% Similarity=0.067 Sum_probs=48.4
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+.++||||++.|.......+..+|++++|+|+........ +.++..+.. .+.| +++++||+
T Consensus 70 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 137 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKS 137 (195)
T ss_dssp EEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 479999999999999888899999999999999876543222 334444433 4667 88999996
No 85
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.58 E-value=7.5e-08 Score=72.24 Aligned_cols=100 Identities=14% Similarity=0.058 Sum_probs=63.7
Q ss_pred hhhhhhcccccccccchhhcccceEEeEeEEEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-c
Q psy9646 111 DKKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-P 187 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~ 187 (211)
..|++++...+.......+.....+.+.....+...+ ..+.++||||++.+.......+..+|++++|+|+.+... .
T Consensus 26 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 105 (196)
T 3tkl_A 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 105 (196)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHH
Confidence 3445555444433333333334444455555555555 568899999999998888888899999999999876432 2
Q ss_pred chHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 188 QTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 188 ~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
....++..+... ++| +++++||+
T Consensus 106 ~~~~~~~~i~~~~~~~~p-~ilv~nK~ 131 (196)
T 3tkl_A 106 NVKQWLQEIDRYASENVN-KLLVGNKC 131 (196)
T ss_dssp THHHHHHHHHHHSCTTCE-EEEEEECT
T ss_pred HHHHHHHHHHHhcCCCCC-EEEEEECc
Confidence 223344444433 566 78999996
No 86
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.55 E-value=9.7e-08 Score=71.01 Aligned_cols=100 Identities=13% Similarity=0.051 Sum_probs=61.2
Q ss_pred hhhhhhcccccccccchhhcccceEEeEeEEEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc
Q psy9646 111 DKKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ 188 (211)
Q Consensus 111 ~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~ 188 (211)
..|++++...+.............+.+.....+...+ ..+.++||||+++|.......+..+|++++|+|+.....-+
T Consensus 20 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 99 (186)
T 2bme_A 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN 99 (186)
T ss_dssp TSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHH
Confidence 3444554443332222222233334344344444444 57889999999999888888899999999999987643222
Q ss_pred h-HHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 189 T-REHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 189 ~-~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
. ..++..+.. .++| +++++||+
T Consensus 100 ~~~~~~~~~~~~~~~~~p-iilv~nK~ 125 (186)
T 2bme_A 100 ALTNWLTDARMLASQNIV-IILCGNKK 125 (186)
T ss_dssp THHHHHHHHHHHSCTTCE-EEEEEECG
T ss_pred HHHHHHHHHHHhcCCCCc-EEEEEECc
Confidence 1 223333332 4566 88999995
No 87
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.54 E-value=5.7e-08 Score=72.16 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=41.1
Q ss_pred EEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 141 VEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 141 ~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
..+...+ ..+.++||||+++|.......+..+|++++|+|+..... .....++..+... ++| ++++.||+
T Consensus 48 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~ 123 (183)
T 2fu5_C 48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKC 123 (183)
T ss_dssp EEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC-
T ss_pred EEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECc
Confidence 3344444 678999999999988777778889999999999876432 2223344444442 566 88999995
No 88
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.54 E-value=7.8e-08 Score=73.18 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=51.7
Q ss_pred eEeEEEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc---CCCeEEEEEeC
Q psy9646 137 NVAHVEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI---GVTNIVVFINK 210 (211)
Q Consensus 137 ~~~~~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~---~~~~~i~~inK 210 (211)
+.....+...+ .++.++||||++.|.......+..+|++++|+|+..... .....++..+... +.| +++|+||
T Consensus 56 ~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK 134 (213)
T 3cph_A 56 DFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNK 134 (213)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEEC
T ss_pred eEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEEC
Confidence 33334444455 578999999999988777788899999999999875432 1223344444432 566 8899999
Q ss_pred C
Q psy9646 211 F 211 (211)
Q Consensus 211 ~ 211 (211)
+
T Consensus 135 ~ 135 (213)
T 3cph_A 135 S 135 (213)
T ss_dssp T
T ss_pred C
Confidence 6
No 89
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.54 E-value=6.3e-08 Score=83.27 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=43.6
Q ss_pred cccceEEeEeEEEeeeCCceeEeecCCcccccH--------hHHhhhccccceEEEEEeccCCCCc----chHHHHHHHH
Q psy9646 130 KARGITINVAHVEYATENRHYSHTDCPGHADYI--------KNMITGTSQMDGAILVVAATDGAMP----QTREHLLLAK 197 (211)
Q Consensus 130 ~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~--------~~~~~~~~~~d~~~~vvd~~~~~~~----~~~~~~~~~~ 197 (211)
...+.|.+.....+...+..+.++||||+.++. +.+...+..+|++++|+|+..+... ....+++.+.
T Consensus 263 ~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~ 342 (476)
T 3gee_A 263 HMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP 342 (476)
T ss_dssp ----------CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT
T ss_pred CCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC
Confidence 344566666666777788899999999987753 2345577899999999999988765 3333433332
Q ss_pred HcCCCeEEEEEeCC
Q psy9646 198 QIGVTNIVVFINKF 211 (211)
Q Consensus 198 ~~~~~~~i~~inK~ 211 (211)
+.| +|+|+||+
T Consensus 343 --~~p-iIvV~NK~ 353 (476)
T 3gee_A 343 --AAK-FLTVANKL 353 (476)
T ss_dssp --TSE-EEEEEECT
T ss_pred --CCC-EEEEEECc
Confidence 455 88999996
No 90
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.53 E-value=7.1e-08 Score=71.18 Aligned_cols=64 Identities=16% Similarity=0.005 Sum_probs=47.4
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH-----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ-----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~-----~~~~~~i~~inK~ 211 (211)
.++.+.||||++.|.......+..+|++++|+|+.....- ....++..+.. .+.|+++++.||+
T Consensus 56 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~ 125 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125 (178)
T ss_dssp EEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECG
T ss_pred EEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcc
Confidence 6789999999999887778888999999999998765321 22233344433 2567678899995
No 91
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.52 E-value=1.3e-07 Score=70.75 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=52.6
Q ss_pred EeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHH-HH-----cCCCeEEEEEeC
Q psy9646 138 VAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLA-KQ-----IGVTNIVVFINK 210 (211)
Q Consensus 138 ~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~-~~-----~~~~~~i~~inK 210 (211)
.....+..++..+.++||||++++.......+..+|++++|+|+..... ......+..+ .. .+.| +++++||
T Consensus 57 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK 135 (190)
T 2h57_A 57 FSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANK 135 (190)
T ss_dssp EEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEEC
T ss_pred eeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeC
Confidence 3344556667899999999999998888888899999999999876421 1222233333 32 3667 8899999
Q ss_pred C
Q psy9646 211 F 211 (211)
Q Consensus 211 ~ 211 (211)
+
T Consensus 136 ~ 136 (190)
T 2h57_A 136 M 136 (190)
T ss_dssp T
T ss_pred c
Confidence 6
No 92
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.52 E-value=1.5e-07 Score=68.79 Aligned_cols=71 Identities=21% Similarity=0.142 Sum_probs=51.9
Q ss_pred EEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 140 HVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 140 ~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
...+...+..+.++||||++++.......+..+|++++|+|+.....- .....+..... .+.| +++++||+
T Consensus 43 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 118 (171)
T 1upt_A 43 VETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQ 118 (171)
T ss_dssp EEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECT
T ss_pred eEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECC
Confidence 344556688999999999999888888888999999999999766432 22223333322 3666 88999996
No 93
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.51 E-value=2.6e-07 Score=69.03 Aligned_cols=64 Identities=14% Similarity=0.245 Sum_probs=51.4
Q ss_pred CceeEeecCCcc----------c---ccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGH----------A---DYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~----------~---~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.++.++||||. . .+....+.....+|++++|+|+..+.......+++.+...++| +++++||+
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~ 143 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIP-FTIVLTKM 143 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECG
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEECh
Confidence 457889999992 2 2345566666778999999999888887778888888888988 88999995
No 94
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.51 E-value=1.9e-07 Score=70.03 Aligned_cols=64 Identities=17% Similarity=0.310 Sum_probs=49.0
Q ss_pred CceeEeecCCc----------ccccH---hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPG----------HADYI---KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG----------~~~~~---~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.++.++|||| ++.|. ...+.....+|++++|+|+..+....+.++++.+...+.| +++++||+
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~ 144 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP-VIVIATKA 144 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECG
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECc
Confidence 34799999999 44443 3334444556999999999988877777777888888888 88999995
No 95
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.50 E-value=1.9e-07 Score=68.07 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=47.2
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
....+.++||||+..+.......+..+|++++|+|+.....-. ...++..+.. .+.| +++++||+
T Consensus 50 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 118 (170)
T 1ek0_A 50 HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKI 118 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECG
T ss_pred EEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECC
Confidence 3357899999999999888888899999999999987653222 2223333332 2566 88899995
No 96
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.50 E-value=5.9e-08 Score=87.42 Aligned_cols=101 Identities=24% Similarity=0.333 Sum_probs=80.0
Q ss_pred hHHHHHhhhCCCCC--------------------CCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCc
Q psy9646 2 ELLNQIDTYIPQPV--------------------RDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGR 61 (211)
Q Consensus 2 ~ll~~l~~~i~~p~--------------------~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~ 61 (211)
.||+++.+++|.|. .+.++||.+.|..+...++.|++..|||-+|+++.|++|.....++
T Consensus 280 ~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~ 359 (709)
T 4fn5_A 280 LVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGK 359 (709)
T ss_dssp HHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCC
T ss_pred HHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCc
Confidence 48999999998773 3457899999999999999999999999999999999998655443
Q ss_pred eeeEEEEEEEecc----eecceecccCceehhccCCCcccccccccccccc
Q psy9646 62 QFKTTVTGIEMFH----KILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPV 108 (211)
Q Consensus 62 ~~~~~v~~i~~~~----~~~~~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~ 108 (211)
+.++..+.... .++++|.|||++++ .+ ..++..|+++++..
T Consensus 360 --~~~v~~l~~~~g~~~~~v~~~~aGdIv~i--~G--l~~~~~gdTl~~~~ 404 (709)
T 4fn5_A 360 --KERVGRMVQMHANQREEIKEVRAGDIAAL--IG--MKDVTTGDTLCSIE 404 (709)
T ss_dssp --CCBCCCEECCCSSCCCEESEECTTCEEEE--CS--CSSCCTTCEEECSS
T ss_pred --EEeecceeEeecceeeEeeeecCCCeeee--cC--CCcCccCCEecCCC
Confidence 44555664433 68999999999987 33 34678888887543
No 97
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.50 E-value=1.6e-07 Score=69.99 Aligned_cols=71 Identities=20% Similarity=0.167 Sum_probs=51.9
Q ss_pred EEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 140 HVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 140 ~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
...+..++..+.+.||||++++.......+..+|++++|+|+..... ......+..+.. .+.| +++++||+
T Consensus 54 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 129 (186)
T 1ksh_A 54 IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQ 129 (186)
T ss_dssp EEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECT
T ss_pred eEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCc
Confidence 34455578899999999999998888888999999999999876542 222233333322 3566 88999996
No 98
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.49 E-value=1.3e-07 Score=81.51 Aligned_cols=101 Identities=16% Similarity=0.100 Sum_probs=69.7
Q ss_pred chhhhhhhhccccccccc-chhhcccceEEeEeEEEeeeCCceeEeecCCccc-ccH--------hHHhhhccccceEEE
Q psy9646 108 VLADKKLAKVKQYADIDN-APEEKARGITINVAHVEYATENRHYSHTDCPGHA-DYI--------KNMITGTSQMDGAIL 177 (211)
Q Consensus 108 ~~~~~~~~~f~~~i~~~~-~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~-~~~--------~~~~~~~~~~d~~~~ 177 (211)
+.+..||+++...+.-.. .......+.|.+.....+...+..+.++||||+. ++. +.++..+..+|++++
T Consensus 250 G~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~ 329 (482)
T 1xzp_A 250 GKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLF 329 (482)
T ss_dssp CCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEE
T ss_pred CcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEE
Confidence 344556666554443221 1123344566666666677788899999999998 542 446677889999999
Q ss_pred EEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 178 VVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 178 vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+|+..+...++.++++.+ .+.| +|+|+||+
T Consensus 330 VvD~s~~~s~~~~~il~~l--~~~p-iivV~NK~ 360 (482)
T 1xzp_A 330 VLDASSPLDEEDRKILERI--KNKR-YLVVINKV 360 (482)
T ss_dssp EEETTSCCCHHHHHHHHHH--TTSS-EEEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHh--cCCC-EEEEEECc
Confidence 9999888776666676655 3667 88999996
No 99
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.49 E-value=1.3e-07 Score=68.80 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=50.6
Q ss_pred EEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 141 VEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 141 ~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+...+..+.+.||||+++|.......+..+|++++|+|+..... ......+..+.. .+.| ++++.||+
T Consensus 37 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 111 (164)
T 1r8s_A 37 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQ 111 (164)
T ss_dssp EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECT
T ss_pred EEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECc
Confidence 3455677899999999999998877788899999999999876532 112223333322 2566 88999996
No 100
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.49 E-value=3.8e-07 Score=67.13 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=50.0
Q ss_pred EEEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHH-------cCCCeEEEEEe
Q psy9646 140 HVEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQ-------IGVTNIVVFIN 209 (211)
Q Consensus 140 ~~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~-------~~~~~~i~~in 209 (211)
...+...+ ..+.++||||++.+.......+..+|++++|+|+.....-+. ..++..+.. .+.| +++++|
T Consensus 46 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~n 124 (177)
T 1wms_A 46 NKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGN 124 (177)
T ss_dssp EEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEE
T ss_pred EEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEE
Confidence 33444444 478999999999998888888899999999999876542221 223333322 4567 889999
Q ss_pred CC
Q psy9646 210 KF 211 (211)
Q Consensus 210 K~ 211 (211)
|+
T Consensus 125 K~ 126 (177)
T 1wms_A 125 KI 126 (177)
T ss_dssp CT
T ss_pred CC
Confidence 96
No 101
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.49 E-value=1.5e-07 Score=69.22 Aligned_cols=99 Identities=15% Similarity=0.051 Sum_probs=59.3
Q ss_pred hhhhhcccccccccchhhcccceEEeEeEEEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cc
Q psy9646 112 KKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQ 188 (211)
Q Consensus 112 ~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~ 188 (211)
.|++++...+.............+.+.....+...+ ..+.++||||+++|.......+..+|++++|+|+..... ..
T Consensus 25 ~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 104 (179)
T 2y8e_A 25 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQ 104 (179)
T ss_dssp SSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHH
Confidence 444554443332222222223333333333444444 578999999999998888888899999999999875432 22
Q ss_pred hHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 189 TREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 189 ~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
...++..+.. .++| +++++||+
T Consensus 105 ~~~~~~~i~~~~~~~~p-iilv~nK~ 129 (179)
T 2y8e_A 105 TSKWIDDVRTERGSDVI-IMLVGNKT 129 (179)
T ss_dssp HHHHHHHHHHHHTTSSE-EEEEEECG
T ss_pred HHHHHHHHHHhcCCCCc-EEEEEECC
Confidence 2233333332 3566 88999995
No 102
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.49 E-value=8.6e-08 Score=72.12 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=50.3
Q ss_pred EEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 141 VEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 141 ~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
..+...+ ..+.++||||+.+|.......+..+|++++|+|+......+. ..++..+... +.| +++++||+
T Consensus 66 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~ 141 (192)
T 2il1_A 66 KTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKL 141 (192)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECG
T ss_pred EEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECc
Confidence 3344444 578999999999998888888899999999999876543222 2333444432 566 88999995
No 103
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.47 E-value=3.5e-07 Score=74.15 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=51.1
Q ss_pred CCceeEeecCCcccc-------------cHhHHhhhccccceEEEEEec-cCCCCcch-HHHHHHHHHcCCCeEEEEEeC
Q psy9646 146 ENRHYSHTDCPGHAD-------------YIKNMITGTSQMDGAILVVAA-TDGAMPQT-REHLLLAKQIGVTNIVVFINK 210 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~-------------~~~~~~~~~~~~d~~~~vvd~-~~~~~~~~-~~~~~~~~~~~~~~~i~~inK 210 (211)
...++.|+||||+.+ +...+...+..+|++++++|+ ..+...++ ..+++.+...+.| +++|+||
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~-~i~v~NK 207 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKR-TIGVITK 207 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSS-EEEEEEC
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCc-EEEEEcC
Confidence 457899999999764 566777888999999999997 56665444 4677777777888 7899999
Q ss_pred C
Q psy9646 211 F 211 (211)
Q Consensus 211 ~ 211 (211)
+
T Consensus 208 ~ 208 (315)
T 1jwy_B 208 L 208 (315)
T ss_dssp T
T ss_pred c
Confidence 6
No 104
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.47 E-value=1.7e-07 Score=70.89 Aligned_cols=64 Identities=19% Similarity=0.100 Sum_probs=48.5
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH------cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ------IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~------~~~~~~i~~inK~ 211 (211)
...+.++||||+++|.......+..+|++++|+|+..... .....++..+.. .++| +++|+||+
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~ 142 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKT 142 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECc
Confidence 4578999999999998888888999999999999876543 222334444444 3566 88999996
No 105
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.47 E-value=1.2e-07 Score=69.14 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=46.5
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
..+.++||||++++.......+..+|++++|+|+..... .....++..+... +.| +++++||+
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~ 118 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKS 118 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECT
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECc
Confidence 478899999999988777788899999999999875432 1223344444432 566 88999996
No 106
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.47 E-value=3e-07 Score=79.36 Aligned_cols=100 Identities=19% Similarity=0.036 Sum_probs=77.4
Q ss_pred hHHHHHhhhC--CCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEec-ceecc
Q psy9646 2 ELLNQIDTYI--PQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMF-HKILD 78 (211)
Q Consensus 2 ~ll~~l~~~i--~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~-~~~~~ 78 (211)
+|++.|.... ..+....+.|++++|.+++..++.|++.+|+|.+|++++||.+.+.+. ..+|+++... ..+++
T Consensus 156 eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~~----~~kVr~i~~~~g~~v~ 231 (501)
T 1zo1_I 156 ELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFE----YGRVRAMRNELGQEVL 231 (501)
T ss_dssp THHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEBS----SCEEEEECCTTTTSEE
T ss_pred hhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEccc----eeEEEEEEecCCCcCc
Confidence 4677776532 223445678999999999999999999999999999999999987653 5789999865 46899
Q ss_pred eecccCceehhccCCCcccccccccccccc
Q psy9646 79 EAQAGDQLGALVKGMKRDEVNRGLIMAKPV 108 (211)
Q Consensus 79 ~a~~G~~v~~~l~~~~~~~v~~G~ii~~~~ 108 (211)
+|.+|+.+.+. +++ .....|++++...
T Consensus 232 ~a~~g~~V~i~--gl~-~~~~~Gd~~~~~~ 258 (501)
T 1zo1_I 232 EAGPSIPVEIL--GLS-GVPAAGDEVTVVR 258 (501)
T ss_dssp EECCSSCSSSE--EEC-SCCCTTEEEEEEC
T ss_pred EeccCCcEEEe--CCC-CCCCCCCEEEecC
Confidence 99999999874 333 1247788887543
No 107
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.46 E-value=3.4e-07 Score=69.39 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=50.1
Q ss_pred EEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 141 VEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 141 ~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
..+...+ .++.+.||||+++|.......+..+|++++|+|+.+... .....++..+.. .++| ++++.||+
T Consensus 69 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~ 144 (201)
T 2hup_A 69 KTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKS 144 (201)
T ss_dssp EEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECT
T ss_pred EEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECC
Confidence 3344444 578999999999998888888899999999999865432 222334444443 3466 78999996
No 108
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.46 E-value=1.4e-07 Score=70.51 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=44.6
Q ss_pred ceeEeecCCcccccH-hHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYI-KNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~-~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+.++||||+++|. ......+..+|++++|+|+.....- ....++..+.. .+.| +++++||+
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 137 (189)
T 1z06_A 69 IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKC 137 (189)
T ss_dssp EEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECT
T ss_pred EEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 578999999999887 5566667899999999998754321 12223333322 3567 88999996
No 109
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.45 E-value=1.7e-07 Score=70.21 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=49.1
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHH---------cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQ---------IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~---------~~~~~~i~~inK~ 211 (211)
..++.+.||||+++|.......+..+|++++|+|+.++...++.+.++.+.. .++| +++|.||+
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~ 145 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKR 145 (198)
T ss_dssp EEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECT
T ss_pred ceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEch
Confidence 4578899999999998888888999999999999986554444444433322 4667 88999996
No 110
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.45 E-value=1.9e-07 Score=69.86 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=50.1
Q ss_pred eeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 143 YATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 143 ~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
+......+.++||||+.+|.......+..+|++++|+|+..... .....++..+... +.| +++++||+
T Consensus 66 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~ 137 (189)
T 2gf9_A 66 RHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKC 137 (189)
T ss_dssp ETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECT
T ss_pred ECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECc
Confidence 33344678999999999988888888899999999999865432 2233455555543 566 88999996
No 111
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.45 E-value=1.8e-07 Score=68.08 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=46.4
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
...+.++||||+.++.......+..+|++++|+|+..... .....++..+.. .+.| +++++||+
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~ 119 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKI 119 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECG
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECc
Confidence 3578899999999888777788889999999999876432 222233333332 3677 88999995
No 112
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.44 E-value=2.7e-07 Score=67.23 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=48.7
Q ss_pred eeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 143 YATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 143 ~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
+......+.++||||+.+|.......+..+|++++|+|+..... .....++..+... ++| ++++.||+
T Consensus 50 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~ 121 (170)
T 1r2q_A 50 LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV-IALSGNKA 121 (170)
T ss_dssp ETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECG
T ss_pred ECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECc
Confidence 33345678999999999998888888899999999999876532 2223344444433 455 77888995
No 113
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.44 E-value=2.6e-07 Score=68.18 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=40.2
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
..+.++||||+++|.......+..+|++++|+|+.....-. ...++..+.. .+.| +++++||+
T Consensus 60 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~ 126 (180)
T 2g6b_A 60 VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKV 126 (180)
T ss_dssp EEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECC
T ss_pred EEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECc
Confidence 47889999999999888888889999999999987653222 2334444443 4566 88999996
No 114
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.44 E-value=1.1e-07 Score=70.78 Aligned_cols=69 Identities=25% Similarity=0.216 Sum_probs=51.2
Q ss_pred EeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 142 EYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
.+..++..+.++||||+++|.......+..+|++++|+|+.....- .....+..+.. .+.| +++++||+
T Consensus 59 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~ 132 (181)
T 2h17_A 59 EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQ 132 (181)
T ss_dssp EEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECT
T ss_pred EEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECC
Confidence 3445678899999999999888778888999999999999876432 22333333332 4566 88999996
No 115
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.44 E-value=3.2e-07 Score=69.34 Aligned_cols=65 Identities=15% Similarity=0.072 Sum_probs=48.5
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
....+.++||||+++|.......+..+|++++|+|+..... .....++..+.. .+.| +++++||+
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~ 123 (203)
T 1zbd_A 55 KRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKC 123 (203)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECT
T ss_pred eEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECc
Confidence 34578999999999998888888999999999999876532 122334444444 3566 88999996
No 116
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.43 E-value=3.2e-07 Score=68.90 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=54.5
Q ss_pred ceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHHc---CCCeEEEEE
Q psy9646 133 GITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQI---GVTNIVVFI 208 (211)
Q Consensus 133 g~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~~---~~~~~i~~i 208 (211)
+.+.......+......+.++||||+.+|.......+..+|++++|+|+.....- ....++..+... ++| +++++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~ 135 (192)
T 2fg5_A 57 GASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV-MAIAG 135 (192)
T ss_dssp SEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCE-EEEEE
T ss_pred ceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEE
Confidence 3444443444444556899999999999988888888999999999998765322 223344444443 566 88999
Q ss_pred eCC
Q psy9646 209 NKF 211 (211)
Q Consensus 209 nK~ 211 (211)
||+
T Consensus 136 NK~ 138 (192)
T 2fg5_A 136 NKC 138 (192)
T ss_dssp ECG
T ss_pred ECc
Confidence 995
No 117
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.43 E-value=1.8e-07 Score=70.09 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=52.2
Q ss_pred eEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 139 AHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 139 ~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
.+..+...+..+.++||||+++|.......+..+|++++|+|+..... ......+..+.. .++| +++++||+
T Consensus 58 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~ 134 (188)
T 1zd9_A 58 NMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKR 134 (188)
T ss_dssp EEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECT
T ss_pred eEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECC
Confidence 344466678899999999999988888788899999999999875432 122223333322 4677 88999996
No 118
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.43 E-value=7.6e-07 Score=68.82 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=49.8
Q ss_pred ceEEeEeEEEeeeCCceeEeecCCccc------cc---HhHHhhhccccceEEEEEeccCCCCcc---hHHHHHHHHHc-
Q psy9646 133 GITINVAHVEYATENRHYSHTDCPGHA------DY---IKNMITGTSQMDGAILVVAATDGAMPQ---TREHLLLAKQI- 199 (211)
Q Consensus 133 g~tv~~~~~~~~~~~~~~~~iDtPG~~------~~---~~~~~~~~~~~d~~~~vvd~~~~~~~~---~~~~~~~~~~~- 199 (211)
+.+.......+...+..+.++||||+. .. ......-...+|++++|+|+.....-. ...++..+...
T Consensus 61 ~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~ 140 (228)
T 2qu8_A 61 FTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF 140 (228)
T ss_dssp ----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC
T ss_pred CcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh
Confidence 345555555666677889999999983 21 122223356789999999998765422 23455555554
Q ss_pred -CCCeEEEEEeCC
Q psy9646 200 -GVTNIVVFINKF 211 (211)
Q Consensus 200 -~~~~~i~~inK~ 211 (211)
+.| +++|+||+
T Consensus 141 ~~~p-iilv~nK~ 152 (228)
T 2qu8_A 141 SNKS-IVIGFNKI 152 (228)
T ss_dssp -CCC-EEEEEECG
T ss_pred cCCc-EEEEEeCc
Confidence 677 88999995
No 119
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.43 E-value=2.4e-07 Score=70.24 Aligned_cols=71 Identities=15% Similarity=0.061 Sum_probs=49.6
Q ss_pred EEEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 140 HVEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 140 ~~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
...+...+ ..+.++||||+++|.......+..+|++++|+|+.....-+ ...++..+.. .+.| +++++||+
T Consensus 47 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~ 123 (206)
T 2bcg_Y 47 IKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKC 123 (206)
T ss_dssp EEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECT
T ss_pred EEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECC
Confidence 33444444 47899999999998887888889999999999987653222 2223444433 2455 78999996
No 120
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.43 E-value=2e-07 Score=68.64 Aligned_cols=64 Identities=17% Similarity=0.119 Sum_probs=47.5
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
...+.++||||++++.......+..+|++++|+|+........ ..++..+.. .+.| +++++||+
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 130 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKA 130 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECT
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECc
Confidence 4578999999999998888888999999999999876533222 233333333 4566 88999996
No 121
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.42 E-value=2.5e-07 Score=69.90 Aligned_cols=64 Identities=19% Similarity=0.128 Sum_probs=47.2
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
...+.++||||+.+|.......+..+|++++|+|+.....-+ ...++..+.. .++| +++|+||+
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~ 143 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKA 143 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECG
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECc
Confidence 356899999999999888888889999999999987654322 2334444443 2677 88999995
No 122
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.42 E-value=1.4e-07 Score=77.41 Aligned_cols=76 Identities=20% Similarity=0.178 Sum_probs=50.8
Q ss_pred EEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC--cchHHHHHHHHHc---CCCeEEEEEe
Q psy9646 135 TINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM--PQTREHLLLAKQI---GVTNIVVFIN 209 (211)
Q Consensus 135 tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~--~~~~~~~~~~~~~---~~~~~i~~in 209 (211)
|+...+..+...+.++.|+||||++.|.......+..+|++++|+|+.+... .....+...+... ++| +|+|+|
T Consensus 196 T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilV~N 274 (329)
T 3o47_A 196 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFAN 274 (329)
T ss_dssp ETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE-EEEEEE
T ss_pred ccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe-EEEEEE
Confidence 4445556677788899999999999998888888899999999999965433 2222333333332 666 889999
Q ss_pred CC
Q psy9646 210 KF 211 (211)
Q Consensus 210 K~ 211 (211)
|+
T Consensus 275 K~ 276 (329)
T 3o47_A 275 KQ 276 (329)
T ss_dssp CT
T ss_pred Cc
Confidence 96
No 123
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.41 E-value=2.3e-07 Score=70.00 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=48.5
Q ss_pred CCceeEeecCCcccccHhHH---hhhccccceEEEEEeccCCCCcchHHHHHHHHHc-----CCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNM---ITGTSQMDGAILVVAATDGAMPQTREHLLLAKQI-----GVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~---~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~-----~~~~~i~~inK~ 211 (211)
...++.+.||||+++|.... ...+..+|++++|+|+.+........+...+... ++| +++|.||+
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~ 139 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKV 139 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECG
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEecc
Confidence 44689999999999987777 5778899999999999887333334444444432 566 88999995
No 124
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.41 E-value=1.4e-07 Score=82.59 Aligned_cols=63 Identities=21% Similarity=0.134 Sum_probs=53.2
Q ss_pred ceeEeecCCcccc-----------cHhHHhhhccccceEEEEEeccC-CCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHAD-----------YIKNMITGTSQMDGAILVVAATD-GAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~-----------~~~~~~~~~~~~d~~~~vvd~~~-~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.|+||||+.+ |...+...+..+|++++|+|+.. +...++..+++.+...+.| +++|+||+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-vilVlNK~ 228 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-IRVVLNKA 228 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-EEEEEECG
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-EEEEEECC
Confidence 4799999999875 56677788899999999999987 5777788888888777777 88999996
No 125
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.41 E-value=1.4e-07 Score=70.39 Aligned_cols=70 Identities=24% Similarity=0.218 Sum_probs=47.8
Q ss_pred EEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 141 VEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 141 ~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+..++..+.++||||++++.......+..+|++++|+|+..... ......+..+.. .+.| +++++||+
T Consensus 53 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~ 127 (187)
T 1zj6_A 53 EEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQ 127 (187)
T ss_dssp EEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECT
T ss_pred EEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCe-EEEEEECC
Confidence 3445567899999999999888777778899999999999987643 222333333433 3566 88999996
No 126
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.41 E-value=5.7e-07 Score=68.39 Aligned_cols=70 Identities=17% Similarity=0.018 Sum_probs=49.6
Q ss_pred EEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 141 VEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 141 ~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
..+..++ .++.+.||||++.|.......+..+|++++|+|+.....- ....++..+.. .++| +++|.||+
T Consensus 66 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~ 141 (201)
T 2ew1_A 66 KTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKI 141 (201)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECG
T ss_pred EEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECC
Confidence 3444444 4788999999999988888889999999999998754321 12334444433 2455 78899995
No 127
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.40 E-value=4.8e-07 Score=66.30 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=48.7
Q ss_pred eEEeEeEEEeeeCCceeEeecCCcccccH-----hHH---hhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEE
Q psy9646 134 ITINVAHVEYATENRHYSHTDCPGHADYI-----KNM---ITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIV 205 (211)
Q Consensus 134 ~tv~~~~~~~~~~~~~~~~iDtPG~~~~~-----~~~---~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i 205 (211)
.+++.....+...+..+.++||||+.+|. +.+ +.....+|++++++|+... .....++..+...+.| ++
T Consensus 36 ~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p-~i 112 (165)
T 2wji_A 36 VTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGAN-LL 112 (165)
T ss_dssp -CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCC-EE
T ss_pred cceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCC-EE
Confidence 34443444455667889999999988763 111 1122478999999998652 2233355556667888 88
Q ss_pred EEEeCC
Q psy9646 206 VFINKF 211 (211)
Q Consensus 206 ~~inK~ 211 (211)
++.||+
T Consensus 113 lv~nK~ 118 (165)
T 2wji_A 113 LALNKM 118 (165)
T ss_dssp EEEECH
T ss_pred EEEEch
Confidence 999995
No 128
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.40 E-value=2e-07 Score=69.92 Aligned_cols=63 Identities=21% Similarity=0.117 Sum_probs=46.7
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
..+.++||||+..|.......+..+|++++|+|+.....- ....++..+... +.| +++++||+
T Consensus 70 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~ 136 (191)
T 2a5j_A 70 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKS 136 (191)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECT
T ss_pred EEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECc
Confidence 5789999999999887777888899999999998764322 223344444432 566 88999996
No 129
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.40 E-value=8.1e-08 Score=72.62 Aligned_cols=99 Identities=14% Similarity=0.049 Sum_probs=56.6
Q ss_pred hhhhhcccccccccchhhcccceEEeEeEEEeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-c
Q psy9646 112 KKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-Q 188 (211)
Q Consensus 112 ~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~ 188 (211)
.|++++...+.......+.....+.+.....+...+ ..+.++||||+++|.......+..+|++++|+|+.+...- .
T Consensus 44 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 123 (199)
T 3l0i_B 44 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 123 (199)
T ss_dssp SCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHH
Confidence 344454444432222222222333333334444444 5788999999999888777888999999999998765332 2
Q ss_pred hHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 189 TREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 189 ~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
...++..+... ++| +++++||+
T Consensus 124 ~~~~~~~i~~~~~~~~p-~ilv~nK~ 148 (199)
T 3l0i_B 124 VKQWLQEIDRYASENVN-KLLVGNKC 148 (199)
T ss_dssp HHHHHHHHHSCC-CCSE-EEEC-CCS
T ss_pred HHHHHHHHHHhccCCCC-EEEEEECc
Confidence 23344444433 566 78899996
No 130
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.39 E-value=2.9e-07 Score=69.69 Aligned_cols=63 Identities=16% Similarity=0.004 Sum_probs=45.4
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH-------cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ-------IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~-------~~~~~~i~~inK~ 211 (211)
..+.++||||+.+|.......+..+|++++|+|+.....-. ...++..+.. .++| +++++||+
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 127 (207)
T 1vg8_A 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKI 127 (207)
T ss_dssp EEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECT
T ss_pred EEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECC
Confidence 57899999999998877777888999999999987653211 1222222222 3667 88999996
No 131
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.39 E-value=9e-08 Score=71.59 Aligned_cols=70 Identities=20% Similarity=0.142 Sum_probs=50.4
Q ss_pred EEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 141 VEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 141 ~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+...+.++.++||||++++.......+..+|++++|+|+.+...- .....+..+.. .+.| +++++||+
T Consensus 59 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 133 (189)
T 2x77_A 59 ETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQ 133 (189)
T ss_dssp EEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECT
T ss_pred EEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECC
Confidence 34555678999999999998877777778899999999999766432 22223333322 2566 88999996
No 132
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.39 E-value=3.5e-07 Score=67.49 Aligned_cols=64 Identities=14% Similarity=0.034 Sum_probs=37.9
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH-------cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ-------IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~-------~~~~~~i~~inK~ 211 (211)
...+.++||||+..|.......+..+|++++|+|+.....-. ...++..+.. .++| +++++||+
T Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 128 (182)
T 1ky3_A 57 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKI 128 (182)
T ss_dssp CEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECT
T ss_pred EEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECC
Confidence 357899999999998888888889999999999987653211 2223333322 4667 88999996
No 133
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.39 E-value=5.3e-07 Score=65.74 Aligned_cols=77 Identities=17% Similarity=0.127 Sum_probs=52.4
Q ss_pred eEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHHc---CCCeEEEEEe
Q psy9646 134 ITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQI---GVTNIVVFIN 209 (211)
Q Consensus 134 ~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~~---~~~~~i~~in 209 (211)
.+.......+......+.++||||++++.......+..+|++++|+|+.....-.. ..++..+... ++| ++++.|
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-iilv~n 119 (170)
T 1z0j_A 41 ASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIV-VAIAGN 119 (170)
T ss_dssp EEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSE-EEEEEE
T ss_pred EEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEE
Confidence 33333333333344678999999999998888888899999999999876543222 3344555443 344 778899
Q ss_pred CC
Q psy9646 210 KF 211 (211)
Q Consensus 210 K~ 211 (211)
|+
T Consensus 120 K~ 121 (170)
T 1z0j_A 120 KC 121 (170)
T ss_dssp CT
T ss_pred CC
Confidence 96
No 134
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.39 E-value=5.2e-07 Score=67.19 Aligned_cols=77 Identities=18% Similarity=0.296 Sum_probs=52.6
Q ss_pred cceEEeEeEEEeeeCCceeEeecCCcccccHh-----HHhhh---ccccceEEEEEeccCCCCcchHHHHHHHHHcCCCe
Q psy9646 132 RGITINVAHVEYATENRHYSHTDCPGHADYIK-----NMITG---TSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTN 203 (211)
Q Consensus 132 rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~-----~~~~~---~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~ 203 (211)
.+.+.+.....+...+..+.++||||+.+|.. .+... ...+|++++++|+.. ......++..+...+.|
T Consensus 38 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~p- 114 (188)
T 2wjg_A 38 PGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGAN- 114 (188)
T ss_dssp TTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCC-
T ss_pred CCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCC-
Confidence 34555555666777788999999999987631 11111 145899999999864 23334455666667777
Q ss_pred EEEEEeCC
Q psy9646 204 IVVFINKF 211 (211)
Q Consensus 204 ~i~~inK~ 211 (211)
++++.||+
T Consensus 115 iilv~nK~ 122 (188)
T 2wjg_A 115 LLLALNKM 122 (188)
T ss_dssp EEEEEECH
T ss_pred EEEEEEhh
Confidence 78999995
No 135
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.38 E-value=2e-07 Score=71.78 Aligned_cols=69 Identities=16% Similarity=0.087 Sum_probs=47.9
Q ss_pred EeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 142 EYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
.+...+ ..+.++||||++.|.......+..+|++++|+|+.....-+ ...++..+... ++| +++|+||+
T Consensus 54 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~ 128 (223)
T 3cpj_B 54 TLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKS 128 (223)
T ss_dssp EEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCG
T ss_pred EEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECc
Confidence 344444 57899999999998877778889999999999987654322 22334444433 566 88899995
No 136
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.37 E-value=7e-07 Score=67.04 Aligned_cols=71 Identities=23% Similarity=0.232 Sum_probs=51.7
Q ss_pred EEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 140 HVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 140 ~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
...+..++..+.+.||||++.+.......+..+|++++|+|+..... ......+..+.. .+.| ++++.||+
T Consensus 59 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~ 134 (190)
T 1m2o_B 59 SEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKI 134 (190)
T ss_dssp EEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECT
T ss_pred eEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECC
Confidence 45566677899999999999887777777889999999999976542 222233333322 4666 88999996
No 137
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.36 E-value=3.8e-07 Score=69.74 Aligned_cols=63 Identities=21% Similarity=0.088 Sum_probs=45.8
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
..+.++||||++++.......+..+|++++|+|+..+...+. ..++..+.. .+.| +++|+||+
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 127 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAP-IVVCANKI 127 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSC-EEEEEECT
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECC
Confidence 568999999999887666667788999999999986654332 223333333 3567 88999996
No 138
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.36 E-value=1.2e-07 Score=81.22 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=49.4
Q ss_pred cceEEeEeEEEeeeCCceeEeecCCcccccH--------hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCe
Q psy9646 132 RGITINVAHVEYATENRHYSHTDCPGHADYI--------KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTN 203 (211)
Q Consensus 132 rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~--------~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~ 203 (211)
.+.|.+.....+..++..+.++||||+.++. +.+...+..+|++++|+|+..+...+..++++.+.. .|
T Consensus 256 ~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~p- 332 (462)
T 3geh_A 256 PGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RP- 332 (462)
T ss_dssp TTCCHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SC-
T ss_pred CCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--Cc-
Confidence 3444444444556678889999999987653 334557788999999999999888777777766643 46
Q ss_pred EEEEEeCC
Q psy9646 204 IVVFINKF 211 (211)
Q Consensus 204 ~i~~inK~ 211 (211)
+++|+||+
T Consensus 333 iivV~NK~ 340 (462)
T 3geh_A 333 LILVMNKI 340 (462)
T ss_dssp EEEEEECT
T ss_pred EEEEEECC
Confidence 88999996
No 139
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.35 E-value=4e-07 Score=66.46 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=39.3
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
..+.++||||++++.......+..+|++++|+|+.+...- ....++..+.. .+.| +++++||+
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 121 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKI 121 (170)
T ss_dssp EEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECG
T ss_pred EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECc
Confidence 4678889999999887777788899999999998764321 12223333332 4566 88999995
No 140
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.35 E-value=2.7e-07 Score=69.19 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=52.8
Q ss_pred eEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 139 AHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 139 ~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
....+......+.++||||++.|.......+..+|++++|+|+.+... .....++..+.. .++| ++++.||+
T Consensus 63 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~ 138 (191)
T 3dz8_A 63 KTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKC 138 (191)
T ss_dssp EEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECT
T ss_pred EEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECC
Confidence 333444456789999999999999888888999999999999875422 223345555544 3566 88999996
No 141
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.35 E-value=2.7e-07 Score=69.84 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=45.9
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
..+.++||||+.+|.......+..+|++++|+|+.....-+ ...++..+.. .++| +++++||+
T Consensus 74 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 140 (200)
T 2o52_A 74 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKK 140 (200)
T ss_dssp EEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECG
T ss_pred eEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECC
Confidence 67899999999988777777788999999999987643222 2233333333 3566 88999995
No 142
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.33 E-value=4.6e-07 Score=67.03 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=42.1
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHH----HHHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHL----LLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~----~~~~~~~~~~~i~~inK~ 211 (211)
.++.++||||+++|.......+..+|++++|+|+.....-. ...++ +.+...++| +++++||+
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 121 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKK 121 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECT
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 56789999999998766667778899999999986532211 11122 222234677 88999996
No 143
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.33 E-value=5.3e-07 Score=66.84 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=43.9
Q ss_pred eeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHH----HHcCCCeEEEEEeCC
Q psy9646 149 HYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLA----KQIGVTNIVVFINKF 211 (211)
Q Consensus 149 ~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~----~~~~~~~~i~~inK~ 211 (211)
.+.++||||+++|.......+..+|++++|+|+.+...- ....++..+ ...++| ++++.||+
T Consensus 67 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 133 (183)
T 3kkq_A 67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKV 133 (183)
T ss_dssp EEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECT
T ss_pred EEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECC
Confidence 456799999999887777788899999999998765221 112222222 235677 88999996
No 144
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.33 E-value=5.1e-07 Score=68.60 Aligned_cols=63 Identities=14% Similarity=0.087 Sum_probs=47.8
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchH--HHHHHHHHc--CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTR--EHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~--~~~~~~~~~--~~~~~i~~inK~ 211 (211)
..+.++||||+++|.......+..+|++++|+|+.+...-+.. .++..+... +.| +++|+||+
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 144 (204)
T 4gzl_A 78 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKL 144 (204)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECH
T ss_pred EEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEech
Confidence 4566999999999988888889999999999998765433322 344455544 677 88999995
No 145
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.32 E-value=5.6e-07 Score=71.32 Aligned_cols=79 Identities=10% Similarity=0.055 Sum_probs=51.3
Q ss_pred cceEEeEeEEEeeeCCceeEeecCCcccccH-------hHHhhhc--cccceEEEEEeccC-CCCcchHHHHHHHHHc-C
Q psy9646 132 RGITINVAHVEYATENRHYSHTDCPGHADYI-------KNMITGT--SQMDGAILVVAATD-GAMPQTREHLLLAKQI-G 200 (211)
Q Consensus 132 rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~-------~~~~~~~--~~~d~~~~vvd~~~-~~~~~~~~~~~~~~~~-~ 200 (211)
.+.+.......+...+..+.++||||+.+|. +.+...+ ..+|++++|++... .....+..+++.+... +
T Consensus 68 ~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~ 147 (262)
T 3def_A 68 QAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFG 147 (262)
T ss_dssp CC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHC
T ss_pred CCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhc
Confidence 3445555556677788899999999998763 2222222 27899999977654 3444455666666553 2
Q ss_pred ----CCeEEEEEeCC
Q psy9646 201 ----VTNIVVFINKF 211 (211)
Q Consensus 201 ----~~~~i~~inK~ 211 (211)
.| +++++||+
T Consensus 148 ~~~~~~-~ivv~nK~ 161 (262)
T 3def_A 148 KEIWCK-TLLVLTHA 161 (262)
T ss_dssp GGGGGG-EEEEEECT
T ss_pred hhhhcC-EEEEEeCc
Confidence 25 78999996
No 146
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.32 E-value=2.7e-07 Score=70.54 Aligned_cols=64 Identities=17% Similarity=0.093 Sum_probs=45.9
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..++.|+||||+.+|.......+..+|++++|+|+.....-+. +.++..+.. .++| +++|+||+
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~ 151 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD-IVLIGNKA 151 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCE-EEEEEECT
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCC-EEEEEECC
Confidence 4579999999999998888888999999999999866432211 122222221 3455 88999996
No 147
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.31 E-value=5.1e-07 Score=67.64 Aligned_cols=70 Identities=19% Similarity=0.052 Sum_probs=49.7
Q ss_pred EEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHHc---CCCeEEEEEeCC
Q psy9646 141 VEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQI---GVTNIVVFINKF 211 (211)
Q Consensus 141 ~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~~---~~~~~i~~inK~ 211 (211)
..+.....++.++||||+++|.......+..+|++++|+|+.....- ....++..+... +.| +++++||+
T Consensus 67 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~ 140 (193)
T 2oil_A 67 VMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIV-VMLVGNKS 140 (193)
T ss_dssp EEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCE-EEEEEECG
T ss_pred EEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECC
Confidence 33333456789999999999887778888999999999998764321 223344444432 555 88999995
No 148
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.31 E-value=8.6e-07 Score=71.95 Aligned_cols=80 Identities=23% Similarity=0.221 Sum_probs=54.0
Q ss_pred ccceEEeEeEEEeee-CCceeEeecCCcccccH-----hHHhhhccccceEEEEEeccCCCCcchHH-HHHHHHH-----
Q psy9646 131 ARGITINVAHVEYAT-ENRHYSHTDCPGHADYI-----KNMITGTSQMDGAILVVAATDGAMPQTRE-HLLLAKQ----- 198 (211)
Q Consensus 131 ~rg~tv~~~~~~~~~-~~~~~~~iDtPG~~~~~-----~~~~~~~~~~d~~~~vvd~~~~~~~~~~~-~~~~~~~----- 198 (211)
..+.|+...+..+.. ++.++.+.||||+++|. ......+..+|++++|+|+.....-+... +.+.+..
T Consensus 34 ~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~ 113 (307)
T 3r7w_A 34 RLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS 113 (307)
T ss_dssp GCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhC
Confidence 445666666666654 56789999999999884 33444557899999999998765433322 2222222
Q ss_pred cCCCeEEEEEeCC
Q psy9646 199 IGVTNIVVFINKF 211 (211)
Q Consensus 199 ~~~~~~i~~inK~ 211 (211)
.++| +++++||+
T Consensus 114 ~~~p-iilv~NK~ 125 (307)
T 3r7w_A 114 PDAK-IFVLLHKM 125 (307)
T ss_dssp TTCE-EEEEEECG
T ss_pred CCCe-EEEEEecc
Confidence 2667 88999995
No 149
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.31 E-value=7.9e-07 Score=69.29 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=51.2
Q ss_pred ceEEeEeEEEeeeCCceeEeecCCccc-----------ccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHH----
Q psy9646 133 GITINVAHVEYATENRHYSHTDCPGHA-----------DYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAK---- 197 (211)
Q Consensus 133 g~tv~~~~~~~~~~~~~~~~iDtPG~~-----------~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~---- 197 (211)
+.+.......+...+..+.++||||+. .+.+.+......+|++++|+|+.. ....+...++.+.
T Consensus 63 ~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~ 141 (239)
T 3lxx_A 63 SITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFG 141 (239)
T ss_dssp --CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHH
T ss_pred ceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhh
Confidence 445555555667788899999999954 344555566678899999999864 4444444444442
Q ss_pred -HcCCCeEEEEEeCC
Q psy9646 198 -QIGVTNIVVFINKF 211 (211)
Q Consensus 198 -~~~~~~~i~~inK~ 211 (211)
....| +++++||+
T Consensus 142 ~~~~~~-~iiv~nK~ 155 (239)
T 3lxx_A 142 ERARSF-MILIFTRK 155 (239)
T ss_dssp HHHGGG-EEEEEECG
T ss_pred hhccce-EEEEEeCC
Confidence 23346 78899995
No 150
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.31 E-value=4.8e-07 Score=69.45 Aligned_cols=79 Identities=14% Similarity=0.071 Sum_probs=54.3
Q ss_pred cceEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHHc--CCCeEEEEE
Q psy9646 132 RGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQI--GVTNIVVFI 208 (211)
Q Consensus 132 rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~~--~~~~~i~~i 208 (211)
.+.+.......+......+.++||||++.|.......+..+|++++|+|+.....-+. ..++..+... ++| +++|+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~ 126 (221)
T 3gj0_A 48 LGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCG 126 (221)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEE
T ss_pred cceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEE
Confidence 3455554444444455678999999999887777777889999999999976543222 2333333332 677 88999
Q ss_pred eCC
Q psy9646 209 NKF 211 (211)
Q Consensus 209 nK~ 211 (211)
||+
T Consensus 127 nK~ 129 (221)
T 3gj0_A 127 NKV 129 (221)
T ss_dssp ECT
T ss_pred ECC
Confidence 996
No 151
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.30 E-value=1.2e-06 Score=69.64 Aligned_cols=78 Identities=10% Similarity=-0.022 Sum_probs=50.6
Q ss_pred ceEEeEeEEEeeeCCceeEeecCCcccccH---hHHhhh------ccccceEEEEEeccC-CCCcchHHHHHHHHHc-C-
Q psy9646 133 GITINVAHVEYATENRHYSHTDCPGHADYI---KNMITG------TSQMDGAILVVAATD-GAMPQTREHLLLAKQI-G- 200 (211)
Q Consensus 133 g~tv~~~~~~~~~~~~~~~~iDtPG~~~~~---~~~~~~------~~~~d~~~~vvd~~~-~~~~~~~~~~~~~~~~-~- 200 (211)
+.+.......+...+..+.++||||+.++. ...... ...+|++++|+|... .....+.++++.+... +
T Consensus 72 ~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~ 151 (270)
T 1h65_A 72 SEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK 151 (270)
T ss_dssp CCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCG
T ss_pred CcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCc
Confidence 344444445566678889999999997653 222222 236899999987654 3444555666666443 4
Q ss_pred ---CCeEEEEEeCC
Q psy9646 201 ---VTNIVVFINKF 211 (211)
Q Consensus 201 ---~~~~i~~inK~ 211 (211)
.| +++++||+
T Consensus 152 ~~~~~-iivV~nK~ 164 (270)
T 1h65_A 152 GIWNK-AIVALTHA 164 (270)
T ss_dssp GGGGG-EEEEEECC
T ss_pred ccccC-EEEEEECc
Confidence 35 88999996
No 152
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.30 E-value=6.1e-07 Score=67.51 Aligned_cols=71 Identities=20% Similarity=0.165 Sum_probs=46.2
Q ss_pred EEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 140 HVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 140 ~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
...+...+..+.++||||+++|.......+..+|++++|+|+.+... ......+..+.. .+.| +++++||+
T Consensus 65 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~ 140 (192)
T 2b6h_A 65 VETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQ 140 (192)
T ss_dssp EEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECT
T ss_pred EEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECC
Confidence 34456677899999999999887777778889999999999976532 112223333322 2566 88999996
No 153
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.30 E-value=8e-07 Score=66.40 Aligned_cols=71 Identities=14% Similarity=0.082 Sum_probs=49.7
Q ss_pred EEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 140 HVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 140 ~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
...+......+.++||||+++|.......+..+|++++|+|+...... ....++..+.. .++| +++++||+
T Consensus 56 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~ 131 (195)
T 1x3s_A 56 TISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV-NMLVGNKI 131 (195)
T ss_dssp EEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCE-EEEEEECT
T ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEEECC
Confidence 333333446789999999999888788888999999999998765322 22233344433 2455 78999996
No 154
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.30 E-value=7.7e-07 Score=64.49 Aligned_cols=63 Identities=14% Similarity=0.027 Sum_probs=45.2
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHH----HcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAK----QIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~----~~~~~~~i~~inK~ 211 (211)
..+.++||||++++.......+..+|++++|+|+.....- .....+..+. ..+.| +++++||+
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 118 (167)
T 1kao_A 51 SVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKV 118 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECG
T ss_pred EEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECC
Confidence 4588999999999988777888899999999998754321 1122222222 23677 88999995
No 155
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.29 E-value=5.6e-07 Score=66.64 Aligned_cols=70 Identities=21% Similarity=0.178 Sum_probs=47.2
Q ss_pred EEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 141 VEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 141 ~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+..++.++.+.||||++++.......+..+|++++|+|+..... ......+..+.. .+.| +++++||+
T Consensus 55 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 129 (183)
T 1moz_A 55 ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQ 129 (183)
T ss_dssp EEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECT
T ss_pred EEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECC
Confidence 3445567889999999999988777788899999999999876643 222233333322 4566 88999996
No 156
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.29 E-value=7.8e-07 Score=71.05 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=51.7
Q ss_pred cceEEeEeEEEeeeCCceeEeecCCcccccHh-----HH---hhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCe
Q psy9646 132 RGITINVAHVEYATENRHYSHTDCPGHADYIK-----NM---ITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTN 203 (211)
Q Consensus 132 rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~-----~~---~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~ 203 (211)
.|.|++.....+.. +..+.++||||+..|.. .+ +.....+|++++|+|+... .....+...+...++|
T Consensus 34 pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p- 109 (272)
T 3b1v_A 34 PGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIP- 109 (272)
T ss_dssp SCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSC-
T ss_pred CCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCC-
Confidence 35666655555655 77899999999887631 11 1111469999999999652 2233455566677888
Q ss_pred EEEEEeCC
Q psy9646 204 IVVFINKF 211 (211)
Q Consensus 204 ~i~~inK~ 211 (211)
+++++||+
T Consensus 110 ~ilv~NK~ 117 (272)
T 3b1v_A 110 VTIALNMI 117 (272)
T ss_dssp EEEEEECH
T ss_pred EEEEEECh
Confidence 78999995
No 157
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.29 E-value=6.4e-07 Score=66.35 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=46.7
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchH--HHHHHHHHc--CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTR--EHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~--~~~~~~~~~--~~~~~i~~inK~ 211 (211)
..+.++||||+++|.......+..+|++++|+|+.....-+.. .++..+... +.| +++++||+
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 119 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKL 119 (186)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECH
T ss_pred EEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEcc
Confidence 4577999999999887777788999999999998765332222 244445443 677 88999995
No 158
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.29 E-value=1e-06 Score=67.12 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=42.9
Q ss_pred CceeEeecCCcccccHhHH-hhhccccceEEEEEeccCCCCcchHHHHHHHH---------HcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNM-ITGTSQMDGAILVVAATDGAMPQTREHLLLAK---------QIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~-~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~---------~~~~~~~i~~inK~ 211 (211)
...+.++||||+.+|...+ ..-+..+|++++|+|+.. .........+.+. ..++| ++++.||+
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 125 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQ 125 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECT
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCC-EEEEEECC
Confidence 5679999999999987744 344789999999999865 1122222222221 12466 88999996
No 159
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.28 E-value=1e-06 Score=74.99 Aligned_cols=80 Identities=24% Similarity=0.317 Sum_probs=57.0
Q ss_pred ccceEEeEeEEEeeeCCceeEeecCCcccccHh------------HHhhhccccceEEEEEeccCCCCcchHHHHHHHHH
Q psy9646 131 ARGITINVAHVEYATENRHYSHTDCPGHADYIK------------NMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQ 198 (211)
Q Consensus 131 ~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~------------~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~ 198 (211)
..+.|.+.....+...+..+.++||||+..+.. .....+..+|++++++|+..+...++..+...+..
T Consensus 211 ~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~ 290 (439)
T 1mky_A 211 IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMER 290 (439)
T ss_dssp CC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH
T ss_pred CCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 345666666667777888899999999854321 23456788999999999999888888778888888
Q ss_pred cCCCeEEEEEeCC
Q psy9646 199 IGVTNIVVFINKF 211 (211)
Q Consensus 199 ~~~~~~i~~inK~ 211 (211)
.+.| +++++||+
T Consensus 291 ~~~~-~ilv~NK~ 302 (439)
T 1mky_A 291 RGRA-SVVVFNKW 302 (439)
T ss_dssp TTCE-EEEEEECG
T ss_pred cCCC-EEEEEECc
Confidence 8887 88999995
No 160
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.28 E-value=1.2e-06 Score=63.79 Aligned_cols=64 Identities=17% Similarity=0.078 Sum_probs=47.2
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH-----cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ-----IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~-----~~~~~~i~~inK~ 211 (211)
...+.++||||++++.......+..+|++++|+|+..... .....++..+.. .+.| +++++||+
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~ 119 (172)
T 2erx_A 50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKC 119 (172)
T ss_dssp EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECG
T ss_pred EEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEcc
Confidence 3568999999999998888888889999999999875432 223334444443 2577 88999995
No 161
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.27 E-value=5.4e-07 Score=68.19 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=47.1
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
..+.++||||+++|.......+..+|++++|+|+.....-+. ..++..+... +.| +++++||+
T Consensus 73 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 139 (201)
T 2gco_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKK 139 (201)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECG
T ss_pred EEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecH
Confidence 478899999999988777788899999999999865422111 3344555544 677 88999995
No 162
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.26 E-value=1.1e-06 Score=65.94 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=47.7
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hH-HHHHHHHHc--CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TR-EHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~-~~~~~~~~~--~~~~~i~~inK~ 211 (211)
..+.+.||||+++|.......+..+|++++|+|+.....-. .. .++..+... ++| ++++.||+
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 132 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQI 132 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECT
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECh
Confidence 57889999999999888888889999999999987653211 12 344555544 677 88999996
No 163
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.26 E-value=1.1e-06 Score=65.85 Aligned_cols=63 Identities=14% Similarity=0.031 Sum_probs=46.9
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
..+.+.||||+++|.......+..+|++++|+|+.+...-.. ..++..+... ++| +++|.||+
T Consensus 71 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 137 (194)
T 3reg_A 71 FILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKV 137 (194)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECG
T ss_pred EEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECh
Confidence 456899999999998888888999999999999876533222 2344444433 456 88999995
No 164
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.25 E-value=3.5e-06 Score=77.26 Aligned_cols=87 Identities=24% Similarity=0.395 Sum_probs=70.3
Q ss_pred hHHHHHhhhCCCCC-------------------------CCCCCCeeEEEeeEEeecCCcE-EEEEEEEEEEEecCCEEE
Q psy9646 2 ELLNQIDTYIPQPV-------------------------RDLDKPFYLPVEHTYSIPGRGT-VVTGRLERGIVKKGMECE 55 (211)
Q Consensus 2 ~ll~~l~~~i~~p~-------------------------~~~~~p~~~~v~~~~~~~~~G~-v~~G~v~~G~i~~g~~v~ 55 (211)
.||+++.+++|.|. .+.++||.+.|..++..++.|+ +..+||-+|+++.|++|.
T Consensus 333 ~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~ 412 (842)
T 1n0u_A 333 ALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVR 412 (842)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEE
T ss_pred HHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEE
Confidence 58899999888774 1457899999999999999995 999999999999999998
Q ss_pred EeecC----cee---eEEEEEEEecc----eecceecccCceeh
Q psy9646 56 FTGYG----RQF---KTTVTGIEMFH----KILDEAQAGDQLGA 88 (211)
Q Consensus 56 i~p~~----~~~---~~~v~~i~~~~----~~~~~a~~G~~v~~ 88 (211)
+...+ +.. ..+|..|...+ .++++|.|||++++
T Consensus 413 v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai 456 (842)
T 1n0u_A 413 IQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGL 456 (842)
T ss_dssp EECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEE
T ss_pred eccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEE
Confidence 75322 111 46778886653 68999999999886
No 165
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.23 E-value=1.3e-06 Score=66.07 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=46.4
Q ss_pred EEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 141 VEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 141 ~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+..++.++.+.||||++++.......+..+|++++|+|+..... ......+..+.. .++| ++++.||+
T Consensus 62 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~ 136 (198)
T 1f6b_A 62 EELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKI 136 (198)
T ss_dssp EEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECT
T ss_pred EEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECC
Confidence 4455667889999999999887666677889999999999976532 222233333322 4677 88999996
No 166
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.22 E-value=2.1e-06 Score=63.80 Aligned_cols=69 Identities=17% Similarity=0.112 Sum_probs=49.6
Q ss_pred EeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHH-H---HcCCCeEEEEEeCC
Q psy9646 142 EYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLA-K---QIGVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~-~---~~~~~~~i~~inK~ 211 (211)
.+...+..+.+.||||++.|.......+..+|++++|+|+.+...- .....+..+ . ..+.| ++++.||+
T Consensus 54 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~ 127 (181)
T 1fzq_A 54 SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQ 127 (181)
T ss_dssp EEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECT
T ss_pred EEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECc
Confidence 3455678899999999999988777888999999999998765321 122222222 2 13567 88999996
No 167
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.21 E-value=1.2e-06 Score=63.61 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=46.4
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
....+.++||||++++.......+..+|++++|+|+..... .....++..+.. .+.| +++++||+
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 118 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKC 118 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECT
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECc
Confidence 34578899999999988777778889999999999865422 112223333332 3677 88999996
No 168
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.21 E-value=1.1e-06 Score=64.67 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=44.3
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHH----HHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLA----KQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~----~~~~~~~~i~~inK~ 211 (211)
..+.++||||+++|.......+..+|++++|+|+..... .....++..+ ...++| +++++||+
T Consensus 57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 124 (181)
T 2fn4_A 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKA 124 (181)
T ss_dssp EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECG
T ss_pred EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 478899999999887777777788999999999875422 1112222222 224667 88999995
No 169
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.21 E-value=1.5e-06 Score=66.02 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=47.1
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC--cchHHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM--PQTREHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~--~~~~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
..+.++||||+++|.......+..+|++++|+|+..... .....++..+... ++| +++++||+
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 139 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKK 139 (207)
T ss_dssp EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECG
T ss_pred EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEch
Confidence 468899999999988777788899999999999865422 1113344555444 677 88999995
No 170
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.19 E-value=9.7e-07 Score=64.01 Aligned_cols=63 Identities=17% Similarity=0.066 Sum_probs=42.7
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+.++||||++++.......+..+|++++|+|+.....- ....++..+.. .+.| +++++||+
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 119 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKS 119 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECG
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECc
Confidence 4788999999999988888888899999999998754321 11222233322 2667 88999995
No 171
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.19 E-value=2.7e-06 Score=67.82 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=30.4
Q ss_pred cceEEEEEecc-CCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 172 MDGAILVVAAT-DGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 172 ~d~~~~vvd~~-~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+|+++++++.. .+....+.++++.+.. ++| +|+|+||+
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~p-vi~V~nK~ 154 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKA 154 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTT-TSC-EEEEESSG
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhc-cCC-EEEEEecc
Confidence 67888888554 5788888888888876 788 88999995
No 172
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.19 E-value=1.2e-06 Score=75.55 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=55.4
Q ss_pred EEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc--hHHHHHHHHH---cCCCeEEEEEe
Q psy9646 135 TINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ--TREHLLLAKQ---IGVTNIVVFIN 209 (211)
Q Consensus 135 tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~--~~~~~~~~~~---~~~~~~i~~in 209 (211)
|+...+..+...+..+.++||||++.|.......+..+|++++|+|+.....-+ ...+.+++.. .++| +|+|+|
T Consensus 353 T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~N 431 (497)
T 3lvq_E 353 TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFAN 431 (497)
T ss_dssp CSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEE
T ss_pred ccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc-EEEEEE
Confidence 444555667778889999999999999888888899999999999997653211 2222222221 3667 889999
Q ss_pred CC
Q psy9646 210 KF 211 (211)
Q Consensus 210 K~ 211 (211)
|+
T Consensus 432 K~ 433 (497)
T 3lvq_E 432 KQ 433 (497)
T ss_dssp CC
T ss_pred CC
Confidence 96
No 173
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.17 E-value=1.9e-06 Score=62.23 Aligned_cols=64 Identities=17% Similarity=0.103 Sum_probs=45.8
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHHc----CCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQI----GVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~~----~~~~~i~~inK~ 211 (211)
...+.++||||+.++.......+..+|++++++|+.....- ....++..+... +.| +++++||+
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~ 118 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKS 118 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECT
T ss_pred EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEch
Confidence 34578999999998887777788899999999998654321 123333333332 677 88999996
No 174
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.16 E-value=7.8e-07 Score=67.24 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=46.3
Q ss_pred eeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 144 ATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 144 ~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
......+.++||||+++|.......+..+|++++|+|+.....- ....++..+.. .++| +++|+||+
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 139 (201)
T 3oes_A 68 GKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKA 139 (201)
T ss_dssp ---CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECT
T ss_pred CCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 34556789999999999887788888999999999998754321 11223333322 3667 88999996
No 175
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.15 E-value=1.4e-06 Score=64.38 Aligned_cols=63 Identities=17% Similarity=0.066 Sum_probs=45.5
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+.++||||+.+|.......+..+|++++|+|+.....- ....++..+.. .++| +++++||+
T Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 133 (187)
T 2a9k_A 66 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKS 133 (187)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECG
T ss_pred EEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 4788999999999988888888999999999998754321 11222222222 2677 88999995
No 176
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.13 E-value=3.3e-06 Score=61.79 Aligned_cols=63 Identities=13% Similarity=0.032 Sum_probs=37.8
Q ss_pred ceeEeecCCccccc--HhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHHc----CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADY--IKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI----GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~--~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~----~~~~~i~~inK~ 211 (211)
.++.++||||+..+ ......-+..+|++++|+|...... .....++..+... ++| +++++||+
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~ 121 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKA 121 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECT
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEECh
Confidence 47889999999874 3333445677999999999865432 1223344444443 677 88999996
No 177
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.12 E-value=3.2e-06 Score=64.69 Aligned_cols=66 Identities=12% Similarity=0.042 Sum_probs=48.4
Q ss_pred eCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 145 TENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 145 ~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
.....+.+.||||++.|.......+..+|++++|+|+.....-.. ..++..+... ++| +++|.||+
T Consensus 72 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~ 141 (214)
T 3q3j_B 72 EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKT 141 (214)
T ss_dssp -CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECG
T ss_pred CEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECh
Confidence 334578899999999988777778899999999999976543222 3344555444 566 88999995
No 178
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.11 E-value=2e-06 Score=63.41 Aligned_cols=64 Identities=22% Similarity=0.172 Sum_probs=44.4
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchH--HHHHHHHHc--CCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTR--EHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~--~~~~~~~~~--~~~~~i~~inK~ 211 (211)
...+.++||||+++|.......+..+|++++|+|+.....-+.. .++..+... +.| +++++||+
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 122 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKL 122 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECH
T ss_pred EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEech
Confidence 34577999999999988888888999999999998654322221 244444442 677 88999995
No 179
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.11 E-value=2.1e-06 Score=65.27 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=45.3
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHHc--CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~~--~~~~~i~~inK~ 211 (211)
..+.+.||||+++|.......+..+|++++|+|+.....-.. ..++..+... ++| ++++.||+
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 123 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKL 123 (212)
T ss_dssp EEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECH
T ss_pred EEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCH
Confidence 578899999999988777778899999999999865432222 1344444443 677 88999994
No 180
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.10 E-value=2.6e-06 Score=63.30 Aligned_cols=64 Identities=9% Similarity=0.015 Sum_probs=45.9
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
..++.+.||||++.|.......+..+|++++|+|+.....-.. ..++..+.. .+.| ++++.||+
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~ 121 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKS 121 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECG
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcc
Confidence 4578899999999987777778899999999999875432221 223333433 2566 88999995
No 181
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.10 E-value=3.4e-06 Score=61.26 Aligned_cols=65 Identities=17% Similarity=0.009 Sum_probs=33.5
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
....+.+.||||++.|.......+..+|++++|+|...... .....++..+.. .++| ++++.||+
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 116 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKS 116 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECT
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEecc
Confidence 34567899999999987777777889999999999875432 122233344433 3677 88999996
No 182
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.10 E-value=5.3e-06 Score=62.43 Aligned_cols=63 Identities=17% Similarity=0.066 Sum_probs=45.8
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+.++||||+++|.......+..+|++++|+|+.....- ....++..+.. .++| +++++||+
T Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 129 (206)
T 2bov_A 62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKS 129 (206)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECT
T ss_pred EEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEecc
Confidence 4788999999999988888888899999999998654321 12223333333 2677 88999996
No 183
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.09 E-value=3.7e-06 Score=63.27 Aligned_cols=63 Identities=11% Similarity=0.023 Sum_probs=45.1
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchH--HHHHHHHHc--CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTR--EHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~--~~~~~~~~~--~~~~~i~~inK~ 211 (211)
..+.+.||||+++|.......+..+|++++|+|+.....-... .++..+... ++| ++++.||+
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 134 (201)
T 2q3h_A 68 VRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP-IILVGTQS 134 (201)
T ss_dssp EEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSC-EEEEEECG
T ss_pred EEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECH
Confidence 3567999999998877666778899999999998754322221 233334432 677 88999995
No 184
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.09 E-value=3.3e-06 Score=62.54 Aligned_cols=63 Identities=17% Similarity=0.075 Sum_probs=42.2
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc-chHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP-QTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~-~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+.++||||+++|.......+..+|++++|+|+.....- ....++..+.. .+.| +++++||+
T Consensus 52 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~ 119 (189)
T 4dsu_A 52 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKC 119 (189)
T ss_dssp EEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECT
T ss_pred EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECc
Confidence 4477899999999887777788899999999998754321 12223333333 3677 88999996
No 185
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.08 E-value=4.9e-06 Score=63.46 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=43.8
Q ss_pred CCceeEeecCCcccccHhHHhhhccc----cceEEEEEecc---CCCCcchHHHHHHHHH------cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQ----MDGAILVVAAT---DGAMPQTREHLLLAKQ------IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~----~d~~~~vvd~~---~~~~~~~~~~~~~~~~------~~~~~~i~~inK~ 211 (211)
....+.++||||++.+.......+.. +|++++|+|+. +........+.+.+.. .++| +++++||+
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 130 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKS 130 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECT
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCC-EEEEEEch
Confidence 45678999999999886655555554 89999999997 2222222233333322 3677 88999996
No 186
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.08 E-value=9e-06 Score=65.14 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=47.1
Q ss_pred CceeEeecCCccc-------------ccHhHHhhhccccceEE-EEEeccCCCCcchH-HHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHA-------------DYIKNMITGTSQMDGAI-LVVAATDGAMPQTR-EHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~-------------~~~~~~~~~~~~~d~~~-~vvd~~~~~~~~~~-~~~~~~~~~~~~~~i~~inK~ 211 (211)
..++.|+||||+. .+...+...+..+|.++ +|+|+..+...++. .+++.+...+.| +++|+||+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~-~i~V~NK~ 202 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQR-TIGVITKL 202 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSS-EEEEEECG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCe-EEEEEEcc
Confidence 4689999999964 23344556666777665 79999888776664 466777667777 78999995
No 187
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=98.07 E-value=2.4e-06 Score=56.97 Aligned_cols=81 Identities=14% Similarity=0.341 Sum_probs=71.0
Q ss_pred eEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCc-eeeEEEEEEEecceecceecccCceehhccCCCccccccc
Q psy9646 23 YLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGR-QFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRG 101 (211)
Q Consensus 23 ~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~-~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~v~~G 101 (211)
+.-|.++|+++..|++...+|.+|.++.+..+.+.-++. -...++.|+..+.+++.++.+|.-+++.+.+. .|++.|
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~--~dik~G 85 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNF--NDIKEG 85 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTC--SSCSSC
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCc--CCCCCC
Confidence 456788899999999999999999999999999987774 23578999999999999999999999999865 489999
Q ss_pred cccc
Q psy9646 102 LIMA 105 (211)
Q Consensus 102 ~ii~ 105 (211)
|++-
T Consensus 86 D~Ie 89 (99)
T 1d1n_A 86 DVIE 89 (99)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9874
No 188
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.06 E-value=9.5e-08 Score=85.06 Aligned_cols=85 Identities=15% Similarity=0.040 Sum_probs=70.8
Q ss_pred hHHHHHhhhCCCCCCCCCCCeeEEEeeEEeecCCcEEEEEEEEEEEEecCCEEEEeecCceeeEEEEEEEecc----eec
Q psy9646 2 ELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFH----KIL 77 (211)
Q Consensus 2 ~ll~~l~~~i~~p~~~~~~p~~~~v~~~~~~~~~G~v~~G~v~~G~i~~g~~v~i~p~~~~~~~~v~~i~~~~----~~~ 77 (211)
.||+++.+++|.|....+.||.+.|..+...++.|++..+||.+|+++.||+|.+...+ +.++..+.... .++
T Consensus 228 ~LLd~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~---~~~v~~l~~~~g~~~~~v 304 (638)
T 3j25_A 228 NLIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKE---KIKVTEMYTSINGELCKI 304 (638)
T ss_dssp HHHHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCC---CSSBCCCCSSCCCCBSCC
T ss_pred hHhhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCc---ceeEEeeecccccccccc
Confidence 58999999898888888899999999999999999999999999999999999776544 34455554332 578
Q ss_pred ceecccCceehh
Q psy9646 78 DEAQAGDQLGAL 89 (211)
Q Consensus 78 ~~a~~G~~v~~~ 89 (211)
++|.|||++++.
T Consensus 305 ~~a~aGdIv~i~ 316 (638)
T 3j25_A 305 DRAYSGEIVILQ 316 (638)
T ss_dssp CTTBCCCCSCCC
T ss_pred cccccceEEEEe
Confidence 999999999873
No 189
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.06 E-value=1.1e-05 Score=72.77 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=49.0
Q ss_pred CceeEeecCCcccc-------------cHhHHhhhc-cccceEEEEEeccCCCCcchH-HHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHAD-------------YIKNMITGT-SQMDGAILVVAATDGAMPQTR-EHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~-------------~~~~~~~~~-~~~d~~~~vvd~~~~~~~~~~-~~~~~~~~~~~~~~i~~inK~ 211 (211)
..+++|+||||... +...+...+ ..+|++++|+|+..++..++. .+++.+...+.| +|+|+||+
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~p-vIlVlNKi 227 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQR-TIGVITKL 227 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSS-EEEEEECT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCC-EEEEEeCc
Confidence 45899999999654 111222222 578999999999999888887 688888888888 77999996
No 190
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.05 E-value=5e-06 Score=63.50 Aligned_cols=63 Identities=17% Similarity=0.050 Sum_probs=32.8
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
..+.+.||||+++|.......+..+|++++|+|+.....-.. ..++..+.. .++| +++|+||+
T Consensus 82 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 148 (214)
T 2j1l_A 82 VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKT 148 (214)
T ss_dssp EEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECG
T ss_pred EEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECh
Confidence 468899999999988777777889999999999875432211 123344433 2677 88999995
No 191
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.05 E-value=6.9e-06 Score=61.14 Aligned_cols=63 Identities=17% Similarity=0.053 Sum_probs=36.9
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+.++||||+.++.......+..+|++++|+|+.....-. ...++..+.. .++| +++++||+
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~ 136 (190)
T 3con_A 69 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKC 136 (190)
T ss_dssp EEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECT
T ss_pred EEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECC
Confidence 45889999999998888888889999999999987653222 2223333333 3677 88999996
No 192
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.05 E-value=3.7e-06 Score=63.98 Aligned_cols=64 Identities=9% Similarity=0.015 Sum_probs=45.8
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch--HHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT--REHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
..++.+.||||+++|.......+..+|++++|+|+.....-.. ..++..+.. .+.| ++++.||+
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~ 142 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKS 142 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECG
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEech
Confidence 4578899999999887777777889999999999875432121 223344433 2556 88999995
No 193
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.02 E-value=4.9e-06 Score=62.45 Aligned_cols=63 Identities=19% Similarity=0.115 Sum_probs=43.2
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
...+.++||||+.+ .......+..+|++++|+|+..... .....++..+.. .++| ++++.||+
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~ 142 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKA 142 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECG
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECc
Confidence 45688999999988 4455566778999999999875322 122223333332 4677 88999995
No 194
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.02 E-value=7.3e-06 Score=59.61 Aligned_cols=64 Identities=17% Similarity=0.074 Sum_probs=37.5
Q ss_pred CceeEeecCCcccccHhHHh-hhccccceEEEEEeccCCCC-cchHHHHHHHHHc----CCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMI-TGTSQMDGAILVVAATDGAM-PQTREHLLLAKQI----GVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~-~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~~----~~~~~i~~inK~ 211 (211)
..++.+.||||++++...+. ..+..+|++++|+|+..... ......+..+... ++| ++++.||+
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 119 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKS 119 (169)
T ss_dssp EEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECT
T ss_pred EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCc
Confidence 35678999999998765333 33567899999999876322 1222333333332 677 88999996
No 195
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.01 E-value=2.3e-06 Score=70.48 Aligned_cols=101 Identities=9% Similarity=0.023 Sum_probs=60.4
Q ss_pred hhhhhhhcccccccccchhhcccceEEeEeEEEeeeCC-ceeEeecCCcccc-------cHhHHhhhccccceEEEEEec
Q psy9646 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN-RHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAA 181 (211)
Q Consensus 110 ~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~-~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~ 181 (211)
+..+++++...+.-...........|.......+...+ ..+.+.||||+.+ +....+..+..+|++++|+|+
T Consensus 167 ~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~ 246 (342)
T 1lnz_A 167 PSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDM 246 (342)
T ss_dssp TTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEES
T ss_pred CCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEEC
Confidence 44555665544432221112222344444445566554 7899999999643 445566667789999999999
Q ss_pred cCC----CCcchHHHHHHHHHc-----CCCeEEEEEeCC
Q psy9646 182 TDG----AMPQTREHLLLAKQI-----GVTNIVVFINKF 211 (211)
Q Consensus 182 ~~~----~~~~~~~~~~~~~~~-----~~~~~i~~inK~ 211 (211)
... .......+...+... +.| +++|+||+
T Consensus 247 s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p-~ilV~NK~ 284 (342)
T 1lnz_A 247 SGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIVANKM 284 (342)
T ss_dssp SCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBEEECT
T ss_pred CcccccChHHHHHHHHHHHHHhhhhhcCCC-EEEEEECc
Confidence 752 112233455555552 566 77899996
No 196
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.00 E-value=6.5e-06 Score=61.60 Aligned_cols=64 Identities=19% Similarity=0.109 Sum_probs=46.4
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH-----cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ-----IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~-----~~~~~~i~~inK~ 211 (211)
...+.++||||+++|.......+..+|++++|+|+..... .....++..+.. .++| +++++||+
T Consensus 55 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~ 124 (199)
T 2gf0_A 55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKC 124 (199)
T ss_dssp EEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECT
T ss_pred EEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 3578899999999998877788889999999999865422 122233333333 2567 88999996
No 197
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.24 E-value=8.4e-07 Score=67.17 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=46.6
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchH--HHHHHHHHc--CCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTR--EHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~--~~~~~~~~~--~~~~~i~~inK~ 211 (211)
..+.++||||+.+|.......+..+|++++|+|+.....-... .++..+... ++| +++++||+
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~ 144 (204)
T 3th5_A 78 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKL 144 (204)
Confidence 4566999999999987777888899999999998765433222 344444433 667 78899995
No 198
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.97 E-value=7.1e-06 Score=66.51 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=48.3
Q ss_pred eeeCCc--eeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchH--HHHHHHHHc--CCCeEEEEEeCC
Q psy9646 143 YATENR--HYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTR--EHLLLAKQI--GVTNIVVFINKF 211 (211)
Q Consensus 143 ~~~~~~--~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~--~~~~~~~~~--~~~~~i~~inK~ 211 (211)
+...+. .+.+.||||+++|.......+..+|++++|+|+.....-... .++..+... ++| ++++.||+
T Consensus 196 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 269 (332)
T 2wkq_A 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP-IILVGTKL 269 (332)
T ss_dssp EEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSC-EEEEEECH
T ss_pred EEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCc-EEEEEEch
Confidence 334444 455999999999988888888999999999998765432221 233444443 677 88999995
No 199
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.97 E-value=2e-05 Score=54.37 Aligned_cols=83 Identities=13% Similarity=0.215 Sum_probs=71.8
Q ss_pred eeEEEeeEEeecCCcE---EEEEEEEEEEEecCCEEEEeecCce-eeEEEEEEEecceecceecccCceehhccCCCcc-
Q psy9646 22 FYLPVEHTYSIPGRGT---VVTGRLERGIVKKGMECEFTGYGRQ-FKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRD- 96 (211)
Q Consensus 22 ~~~~v~~~~~~~~~G~---v~~G~v~~G~i~~g~~v~i~p~~~~-~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~- 96 (211)
=+.-|.++|+++..|+ +...+|..|.++.+..+.+.-++.. ...++.|+..+.+++.++.+|.-+++.+.+ ..
T Consensus 11 G~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~--fni 88 (120)
T 2crv_A 11 GEASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDE--EKV 88 (120)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSC--TTS
T ss_pred EEEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEcc--CCC
Confidence 3577899999998888 9999999999999999999887742 256899999999999999999999999984 45
Q ss_pred cccccccccc
Q psy9646 97 EVNRGLIMAK 106 (211)
Q Consensus 97 ~v~~G~ii~~ 106 (211)
|++.||++-.
T Consensus 89 Dik~GDiIE~ 98 (120)
T 2crv_A 89 EFKPGDQVIC 98 (120)
T ss_dssp CCCTTEEEEE
T ss_pred CCCCCCEEEE
Confidence 8999998853
No 200
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.96 E-value=1.1e-05 Score=59.76 Aligned_cols=62 Identities=24% Similarity=0.439 Sum_probs=41.1
Q ss_pred eeEeecCCcc-----------cccHhH---Hhhh-ccccceEEEEEeccC-----------CCCcchHHHHHHHHHcCCC
Q psy9646 149 HYSHTDCPGH-----------ADYIKN---MITG-TSQMDGAILVVAATD-----------GAMPQTREHLLLAKQIGVT 202 (211)
Q Consensus 149 ~~~~iDtPG~-----------~~~~~~---~~~~-~~~~d~~~~vvd~~~-----------~~~~~~~~~~~~~~~~~~~ 202 (211)
.+.++||||+ +.+... .... ...++++++++|+.. +...++.++...+...++|
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 7889999994 333322 2333 566788888888743 2233445566666677888
Q ss_pred eEEEEEeCC
Q psy9646 203 NIVVFINKF 211 (211)
Q Consensus 203 ~~i~~inK~ 211 (211)
+++++||+
T Consensus 125 -iilv~nK~ 132 (190)
T 2cxx_A 125 -TIVAVNKL 132 (190)
T ss_dssp -EEEEEECG
T ss_pred -eEEEeehH
Confidence 88999995
No 201
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.96 E-value=6.4e-06 Score=74.01 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=49.5
Q ss_pred ceeEeecCCcccc---cHhHHhhhccccceEEEEEeccCCCCcchHHHHH-HHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHAD---YIKNMITGTSQMDGAILVVAATDGAMPQTREHLL-LAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~---~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~-~~~~~~~~~~i~~inK~ 211 (211)
..+.++||||+.+ +...+...+..+|++++|+|+..+....+...+. .+...+.| +++|+||+
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~ 240 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAW 240 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECc
Confidence 4699999999765 4556667778999999999998888776666554 45556777 88999995
No 202
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.86 E-value=5e-05 Score=57.37 Aligned_cols=110 Identities=12% Similarity=0.179 Sum_probs=62.7
Q ss_pred ccccccccccchhhhhhhhccccccccc--chhhcccceEEeEeEEEeeeCCceeEeecCCcccc----------c---H
Q psy9646 98 VNRGLIMAKPVLADKKLAKVKQYADIDN--APEEKARGITINVAHVEYATENRHYSHTDCPGHAD----------Y---I 162 (211)
Q Consensus 98 v~~G~ii~~~~~~~~~~~~f~~~i~~~~--~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~----------~---~ 162 (211)
+.+|..++--+.+..|++++...+.-.. .......|.+..... +...+ ++.++||||+.. + +
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 4555555544555566666655443221 111222333332222 22233 678999999842 1 2
Q ss_pred hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 163 KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 163 ~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.........+|++++++|+..+....+.++.+++...++| ++++.||+
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~nK~ 147 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIA-VLVLLTKA 147 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECG
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEecc
Confidence 2333444678999999999887766566677777778888 66789995
No 203
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.86 E-value=1.3e-05 Score=59.74 Aligned_cols=58 Identities=17% Similarity=0.056 Sum_probs=40.9
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+.+.||||++.|. .+..+|++++|+|+.+...-+. ..++..+.. .++| ++++.||+
T Consensus 67 ~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 129 (184)
T 3ihw_A 67 YLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQD 129 (184)
T ss_dssp EEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECT
T ss_pred EEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 456779999998876 4567899999999876543222 334444444 3567 88999995
No 204
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.83 E-value=2.7e-05 Score=64.45 Aligned_cols=65 Identities=11% Similarity=0.074 Sum_probs=45.5
Q ss_pred CCceeEeecCCccccc-------------HhHHhhhccccceEEEEEeccC-CCC-cchHHHHHHHHHcCCCeEEEEEeC
Q psy9646 146 ENRHYSHTDCPGHADY-------------IKNMITGTSQMDGAILVVAATD-GAM-PQTREHLLLAKQIGVTNIVVFINK 210 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~-------------~~~~~~~~~~~d~~~~vvd~~~-~~~-~~~~~~~~~~~~~~~~~~i~~inK 210 (211)
....+.++||||..++ ...+...+..+|++++++|+.. ... .....+++.+...+.| +|+|+||
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~nK 212 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDR-TFGVLTK 212 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTT-EEEEEEC
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCC-EEEEEeC
Confidence 3457999999998776 4556677789999999998643 222 2224444555455777 7799999
Q ss_pred C
Q psy9646 211 F 211 (211)
Q Consensus 211 ~ 211 (211)
+
T Consensus 213 ~ 213 (360)
T 3t34_A 213 I 213 (360)
T ss_dssp G
T ss_pred C
Confidence 5
No 205
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.79 E-value=4e-05 Score=63.63 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=56.0
Q ss_pred hhhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCccc-----cc---HhHHhhhccccceEEEEEec
Q psy9646 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHA-----DY---IKNMITGTSQMDGAILVVAA 181 (211)
Q Consensus 110 ~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~-----~~---~~~~~~~~~~~d~~~~vvd~ 181 (211)
+..|++++...+.-.....+...+.|.+.....+..++..+.++||||+. ++ .+.+...+..+|++++|+|+
T Consensus 188 ~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~ 267 (364)
T 2qtf_A 188 TNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDS 267 (364)
T ss_dssp TTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEET
T ss_pred CCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEEC
Confidence 44455555443322222222223445445555666677889999999972 22 24455678899999999998
Q ss_pred cCCC--C-cchHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 182 TDGA--M-PQTREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 182 ~~~~--~-~~~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
.... . .+...+.+.+.. .+.| +|+|.||+
T Consensus 268 s~~~~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~ 302 (364)
T 2qtf_A 268 TFSENLLIETLQSSFEILREIGVSGKP-ILVTLNKI 302 (364)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCSCC-EEEEEECG
T ss_pred CCCcchHHHHHHHHHHHHHHhCcCCCC-EEEEEECC
Confidence 7653 1 122223344444 3566 78999995
No 206
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.78 E-value=2e-05 Score=58.76 Aligned_cols=63 Identities=11% Similarity=0.015 Sum_probs=40.2
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH------cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ------IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~------~~~~~~i~~inK~ 211 (211)
...+.+.||||++.|.. +...+..+|++++|+|...... .....++..+.. .++| ++++.||+
T Consensus 68 ~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~ 137 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKL 137 (187)
T ss_dssp EEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECG
T ss_pred EEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECc
Confidence 35678899999987754 3456778999999999875422 112223333333 3677 88999995
No 207
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.77 E-value=2.2e-05 Score=65.94 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=24.9
Q ss_pred ceeEeecCCcccc-------cHhHHhhhccccceEEEEEeccCC
Q psy9646 148 RHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATDG 184 (211)
Q Consensus 148 ~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~~ 184 (211)
.++.|+||||+.+ +..+.+..+..+|++++|+|+.++
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 4799999999854 223445677899999999999775
No 208
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.73 E-value=1.8e-05 Score=58.94 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=40.8
Q ss_pred CCceeEeecCCcccccHhHHhhhc----cccceEEEEEeccCCCCc--chHHHH-HHHHH------cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGT----SQMDGAILVVAATDGAMP--QTREHL-LLAKQ------IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~----~~~d~~~~vvd~~~~~~~--~~~~~~-~~~~~------~~~~~~i~~inK~ 211 (211)
....+.++||||+..+.......+ ..+|++++|+|+...... .....+ ..+.. .+.| +++++||+
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 166 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKS 166 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECT
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEch
Confidence 566889999999987754433333 448999999998622111 111222 22211 3677 88999996
No 209
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.71 E-value=3.6e-05 Score=56.48 Aligned_cols=58 Identities=14% Similarity=0.021 Sum_probs=38.1
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHH------cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQ------IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~------~~~~~~i~~inK~ 211 (211)
.++.+.||||++.+ ..+..+|++++|+|+.....-.. ..+++.+.. .++| ++++.||+
T Consensus 54 ~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~ 118 (178)
T 2iwr_A 54 HLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQD 118 (178)
T ss_dssp EEEEEEECSSSCCH-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCE-EEEEEECT
T ss_pred EEEEEEECCCCchh-----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 46788999999872 34567999999999875432222 222222322 2566 88999995
No 210
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.70 E-value=9.6e-05 Score=60.94 Aligned_cols=64 Identities=14% Similarity=0.097 Sum_probs=43.7
Q ss_pred CceeEeecCCcccc------------cHhH-Hhhhc-cccceEEEEEeccCCCCcchHH-HHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHAD------------YIKN-MITGT-SQMDGAILVVAATDGAMPQTRE-HLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~------------~~~~-~~~~~-~~~d~~~~vvd~~~~~~~~~~~-~~~~~~~~~~~~~i~~inK~ 211 (211)
..++.|+||||... .... +..-+ ...+++++++|+..++..++.. +++.+...+.| +++|+||+
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~-~i~V~NK~ 207 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQR-TIGVITKL 207 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTT-EEEEEECG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCc-eEEEeccc
Confidence 46899999999643 2222 22333 3456777788888777666653 66766667888 77999995
No 211
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.70 E-value=0.00011 Score=60.74 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=47.9
Q ss_pred eEEeEeEEEeeeCCceeEeecCCccccc--------HhHHhhhcc-ccceEEEEEeccCCC--Ccch-HHHHHHHHH-c-
Q psy9646 134 ITINVAHVEYATENRHYSHTDCPGHADY--------IKNMITGTS-QMDGAILVVAATDGA--MPQT-REHLLLAKQ-I- 199 (211)
Q Consensus 134 ~tv~~~~~~~~~~~~~~~~iDtPG~~~~--------~~~~~~~~~-~~d~~~~vvd~~~~~--~~~~-~~~~~~~~~-~- 199 (211)
.|.......+...+..+.++||||+.++ ......++. .+|++++|+|+.... .... ..++..+.. .
T Consensus 200 ~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~ 279 (357)
T 2e87_A 200 TTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK 279 (357)
T ss_dssp CSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT
T ss_pred eeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC
Confidence 3444444455556778999999997543 123333443 589999999986543 2222 334444433 2
Q ss_pred CCCeEEEEEeCC
Q psy9646 200 GVTNIVVFINKF 211 (211)
Q Consensus 200 ~~~~~i~~inK~ 211 (211)
+.| +|++.||+
T Consensus 280 ~~p-iilV~NK~ 290 (357)
T 2e87_A 280 DLP-FLVVINKI 290 (357)
T ss_dssp TSC-EEEEECCT
T ss_pred CCC-EEEEEECc
Confidence 677 88999996
No 212
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.66 E-value=0.0001 Score=55.37 Aligned_cols=63 Identities=17% Similarity=0.077 Sum_probs=41.2
Q ss_pred ceeEeecCCcccccHhHH-hhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNM-ITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~-~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
.++.+.||||+.++...+ ...+..+|++++|+|...... .....++..+.. .++| ++++.||+
T Consensus 72 ~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 140 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKS 140 (195)
T ss_dssp EEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECT
T ss_pred EEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeech
Confidence 456788999998765433 334567999999999865322 122333333433 3677 88999996
No 213
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.65 E-value=5.2e-05 Score=63.13 Aligned_cols=101 Identities=9% Similarity=-0.013 Sum_probs=65.7
Q ss_pred hhhhhhhhcccccccccchhhcccceEEeEeEEEeeeCCceeEeecCCcccc-------cHhHHhhhccccceEEEEEec
Q psy9646 109 LADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAA 181 (211)
Q Consensus 109 ~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~ 181 (211)
.|..|++++...+.-.........+.|++...+.+..++.++.|+||||..+ +..+++..++.+|++++|+|+
T Consensus 80 ~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~ 159 (376)
T 4a9a_A 80 FPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDV 159 (376)
T ss_dssp CCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEET
T ss_pred CCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCcccccccc
Confidence 3455666655444322333344456777777788888999999999999643 456678888999999999999
Q ss_pred cCCCCcchHHHHHHHHHc-----CCCeEEEEEeCC
Q psy9646 182 TDGAMPQTREHLLLAKQI-----GVTNIVVFINKF 211 (211)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~-----~~~~~i~~inK~ 211 (211)
.+.+. +.+.+...+... ..| .++++||+
T Consensus 160 ~~p~~-~~~~i~~EL~~~~~~l~~k~-~~i~~nK~ 192 (376)
T 4a9a_A 160 NKPLH-HKQIIEKELEGVGIRLNKTP-PDILIKKK 192 (376)
T ss_dssp TSHHH-HHHHHHHHHHHTTEEETCCC-CCEEEEEC
T ss_pred CccHH-HHHHHHHHHHHhhHhhccCC-hhhhhhHh
Confidence 75432 222233334332 335 45788985
No 214
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.62 E-value=9.9e-05 Score=57.81 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=41.9
Q ss_pred ceeEeecCCcccccH------hHHhhhccccceEEEEEeccCCCCcchHH-H----HHHHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYI------KNMITGTSQMDGAILVVAATDGAMPQTRE-H----LLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~------~~~~~~~~~~d~~~~vvd~~~~~~~~~~~-~----~~~~~~~~~~~~i~~inK~ 211 (211)
+.++++||||..++. ..+...+.+ +++++++|+.......+.. . .......+.| +++++||+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGAT-TIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSC-EEEEECCG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCC-eEEEEecc
Confidence 578999999987653 234456677 8999999997665544322 1 1223345778 77899995
No 215
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.60 E-value=7.4e-05 Score=65.05 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=48.9
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC--CCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG--VTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~--~~~~i~~inK~ 211 (211)
+..+.+.||||++.|.......+..+|++++|+|+... .....++..+...+ .| +|+|.||+
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~p-vilV~NK~ 160 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSP-VIVVMNKI 160 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCC-EEEEECCT
T ss_pred eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCC-EEEEEECC
Confidence 46799999999988876666667789999999999764 44555666776654 77 78999996
No 216
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.51 E-value=0.00016 Score=59.76 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=54.3
Q ss_pred EEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-----------CcchHHHHHHHHH----c
Q psy9646 135 TINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-----------MPQTREHLLLAKQ----I 199 (211)
Q Consensus 135 tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-----------~~~~~~~~~~~~~----~ 199 (211)
|+.+....+..++..+.+.||+|++.|-+....-..+++++|||+|..+.- +.....+++.... .
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~ 259 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT 259 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence 444445566677888999999999999888788889999999999987631 1222333443333 3
Q ss_pred CCCeEEEEEeCC
Q psy9646 200 GVTNIVVFINKF 211 (211)
Q Consensus 200 ~~~~~i~~inK~ 211 (211)
++| +|++.||+
T Consensus 260 ~~p-iiLv~NK~ 270 (353)
T 1cip_A 260 DTS-IILFLNKK 270 (353)
T ss_dssp TSE-EEEEEECH
T ss_pred CCc-EEEEEECc
Confidence 566 88999994
No 217
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.49 E-value=6.9e-05 Score=55.57 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=42.5
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC--cchHHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM--PQTREHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~--~~~~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
....+.+.||||+++|......-+..+|++++|.|...+.. .....++..+.. .+.| ++++.||+
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~nK~ 122 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTHL 122 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCE-EEEEEECG
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCc-EEEEEECC
Confidence 35578899999998876554555677899999999876531 222233333332 2566 88889995
No 218
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.44 E-value=0.00017 Score=59.69 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=25.5
Q ss_pred ceEEEEEec-cCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 173 DGAILVVAA-TDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 173 d~~~~vvd~-~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|+++++|++ ..+....+..+++.+. .++| +|+|+||+
T Consensus 147 ~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~p-iIlV~NK~ 184 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAKA 184 (361)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHTC-S-SC-EEEEEECC
T ss_pred EEEEEEEecCCCCcchhHHHHHHHhc-cCCC-EEEEEECC
Confidence 578888876 5666666655656553 5677 88999996
No 219
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.41 E-value=0.00024 Score=54.52 Aligned_cols=63 Identities=17% Similarity=0.097 Sum_probs=45.2
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
..+.+.||+|+++|......-+..+|+++++.|...... ..-..++..+.. .++| +|||.||+
T Consensus 62 v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~ 128 (216)
T 4dkx_A 62 IRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKT 128 (216)
T ss_dssp EEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECT
T ss_pred EEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeecc
Confidence 457789999999998777777899999999999764432 222334444432 3455 88999995
No 220
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.39 E-value=0.00013 Score=60.45 Aligned_cols=76 Identities=14% Similarity=0.263 Sum_probs=47.3
Q ss_pred EEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCC---------C--CcchHHHHHHHHH----c
Q psy9646 135 TINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDG---------A--MPQTREHLLLAKQ----I 199 (211)
Q Consensus 135 tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~---------~--~~~~~~~~~~~~~----~ 199 (211)
|+.+....+..++..+.+.||+|++.+-.....-+.++++++||+|..+- . +.....+++.... .
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 33444455666788899999999998887777778899999999998762 1 1122333333332 3
Q ss_pred CCCeEEEEEeCC
Q psy9646 200 GVTNIVVFINKF 211 (211)
Q Consensus 200 ~~~~~i~~inK~ 211 (211)
++| +|++.||+
T Consensus 268 ~~p-iILv~NK~ 278 (362)
T 1zcb_A 268 NVS-IILFLNKT 278 (362)
T ss_dssp TSE-EEEEEECH
T ss_pred CCC-EEEEEECh
Confidence 566 88999994
No 221
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.35 E-value=4.7e-05 Score=62.58 Aligned_cols=59 Identities=17% Similarity=0.062 Sum_probs=37.6
Q ss_pred eCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 145 TENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 145 ~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..+++++|+||||+.++...+ ...+|++++|+|+..+...+.. +. ...+.| .++|+||+
T Consensus 146 ~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~~~~l---~~-~~~~~p-~ivv~NK~ 204 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDDLQGI---KK-GLMEVA-DLIVINKD 204 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC------CCC---CH-HHHHHC-SEEEECCC
T ss_pred ccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHHHHHH---HH-hhhccc-CEEEEECC
Confidence 456789999999988765543 4899999999998755322211 11 112456 56899996
No 222
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.28 E-value=0.00064 Score=57.34 Aligned_cols=113 Identities=9% Similarity=-0.007 Sum_probs=56.2
Q ss_pred ccccccccccchhhhhhhhcccccccccchhhcccceEEeEeEEEeeeCC-ceeEeecCCcccc-------cHhHHhhhc
Q psy9646 98 VNRGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATEN-RHYSHTDCPGHAD-------YIKNMITGT 169 (211)
Q Consensus 98 v~~G~ii~~~~~~~~~~~~f~~~i~~~~~~~e~~rg~tv~~~~~~~~~~~-~~~~~iDtPG~~~-------~~~~~~~~~ 169 (211)
++.|..++--..+..+++++...+.-...........|.......+...+ ..+.+.||||+.+ +.......+
T Consensus 154 lk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~ 233 (416)
T 1udx_A 154 LMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI 233 (416)
T ss_dssp ECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH
Confidence 44444444444455566665443322111111111122222333444444 6789999999743 223344556
Q ss_pred cccceEEEEEeccCCCCcchHHHHHHHHH-----cCCCeEEEEEeCC
Q psy9646 170 SQMDGAILVVAATDGAMPQTREHLLLAKQ-----IGVTNIVVFINKF 211 (211)
Q Consensus 170 ~~~d~~~~vvd~~~~~~~~~~~~~~~~~~-----~~~~~~i~~inK~ 211 (211)
..+|.+++++|+......+-....+.+.. ...| .++++||+
T Consensus 234 era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P-~ILVlNKl 279 (416)
T 1udx_A 234 ARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRP-SLVALNKV 279 (416)
T ss_dssp TSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSC-EEEEEECC
T ss_pred HHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCC-EEEEEECC
Confidence 78999999999861111111111222221 2467 56788996
No 223
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.24 E-value=0.00042 Score=51.91 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=44.4
Q ss_pred EeeeCC--ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcc-hHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 142 EYATEN--RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ-TREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 142 ~~~~~~--~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~-~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
.+...+ ..+.+.||||++.+..........+|++++|.|......-. ...++..+.. .+.| +++++||+
T Consensus 46 ~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~ 120 (199)
T 2f9l_A 46 SIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKS 120 (199)
T ss_dssp EEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECT
T ss_pred EEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECc
Confidence 344444 35678999999887655555567889999999986543222 2233333332 2455 78899996
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.23 E-value=0.00036 Score=55.79 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=39.8
Q ss_pred ecCCccc-ccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 153 TDCPGHA-DYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 153 iDtPG~~-~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
-+.|||. +..+++...++.+|+++.|+||..+.......+.+.+ .+.| .++++||+
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp-~ilVlNK~ 60 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKP-RIMLLNKA 60 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSC-EEEEEECG
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCC-EEEEEECc
Confidence 3579997 5678999999999999999999988776554444433 3556 77899995
No 225
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.13 E-value=0.00073 Score=55.43 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=53.7
Q ss_pred eEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccC-------CCC----cchHHHHHHHHH----
Q psy9646 134 ITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATD-------GAM----PQTREHLLLAKQ---- 198 (211)
Q Consensus 134 ~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~-------~~~----~~~~~~~~~~~~---- 198 (211)
-|+......+..++..+.+.||+|++.|-+....-..++++++||+|..+ .-. ......++.+..
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 34444556677778889999999999988877788899999999999862 111 122233333332
Q ss_pred cCCCeEEEEEeCC
Q psy9646 199 IGVTNIVVFINKF 211 (211)
Q Consensus 199 ~~~~~~i~~inK~ 211 (211)
.++| ++++.||+
T Consensus 227 ~~~p-iiLv~NK~ 238 (340)
T 4fid_A 227 KGAV-KLIFLNKM 238 (340)
T ss_dssp TTSE-EEEEEECH
T ss_pred CCCe-EEEEEECc
Confidence 3566 88999994
No 226
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.05 E-value=0.00055 Score=59.14 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=40.6
Q ss_pred CCceeEeecCCcccc----cHhHHhhhc--cccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHAD----YIKNMITGT--SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~----~~~~~~~~~--~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.++|+||||... +..++.... ..+|.+++|+|+..+.. ....++..... +|..++++||+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~ 250 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKL 250 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCC
Confidence 567899999999763 443432222 27899999999988753 33344444332 45225789996
No 227
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.05 E-value=0.00069 Score=55.30 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=43.3
Q ss_pred CceeEeecCCcccccHh---HHhhhccccceEEEEEeccCCCCcchHHHH----HHHHH--cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIK---NMITGTSQMDGAILVVAATDGAMPQTREHL----LLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~---~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~----~~~~~--~~~~~~i~~inK~ 211 (211)
...+.+-||||+++|.. ....-.+.++++++|+|+.+. .......+ ..+.. .++| ++++.||+
T Consensus 45 ~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ip-illvgNK~ 116 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSIN-IEVLIHKV 116 (331)
T ss_dssp SSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCE-EEEECCCC
T ss_pred EEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCc-EEEEEECc
Confidence 35788999999999853 223446889999999999877 43333322 22222 3566 78899996
No 228
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.03 E-value=0.0011 Score=55.73 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=53.2
Q ss_pred EEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCC---------CC--cchHHHHHHHHH----c
Q psy9646 135 TINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDG---------AM--PQTREHLLLAKQ----I 199 (211)
Q Consensus 135 tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~---------~~--~~~~~~~~~~~~----~ 199 (211)
|+.+....+...+..+.+.||+|++.|-.....-...+++++||+|..+- .. .....+++.+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 33344455666778899999999999988777788999999999998751 11 122334443332 2
Q ss_pred CCCeEEEEEeCC
Q psy9646 200 GVTNIVVFINKF 211 (211)
Q Consensus 200 ~~~~~i~~inK~ 211 (211)
++| +||+.||+
T Consensus 284 ~~p-iiLvgNK~ 294 (402)
T 1azs_C 284 TIS-VILFLNKQ 294 (402)
T ss_dssp SCC-EEEEEECH
T ss_pred CCe-EEEEEECh
Confidence 466 88999994
No 229
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.87 E-value=0.00043 Score=57.09 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=38.1
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+..++|+||||...- ....+..+|++++|+|+..+...+. +... ....| .++|+||+
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~--l~~~--~~~~p-~ivVlNK~ 227 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQG--IKKG--VLELA-DIVVVNKA 227 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTT--CCTT--SGGGC-SEEEEECC
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHH--HHHh--HhhcC-CEEEEECC
Confidence 5678999999996542 2233488999999999865533221 1111 12346 66899996
No 230
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.75 E-value=0.0037 Score=50.99 Aligned_cols=77 Identities=12% Similarity=0.213 Sum_probs=53.0
Q ss_pred eEEeEeEEEeeeCCceeEeecCCcccccHhHHhhhccccceEEEEEecc-------CCCCc----chHHHHHHHHH----
Q psy9646 134 ITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT-------DGAMP----QTREHLLLAKQ---- 198 (211)
Q Consensus 134 ~tv~~~~~~~~~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~-------~~~~~----~~~~~~~~~~~---- 198 (211)
-|+......+..++..+.+.||.|++.+-+....-..++++++||+|.. +.-.. .....++.+..
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 3444455566777888999999999988877777889999999999765 22211 12233333322
Q ss_pred cCCCeEEEEEeCC
Q psy9646 199 IGVTNIVVFINKF 211 (211)
Q Consensus 199 ~~~~~~i~~inK~ 211 (211)
.++| ++++.||+
T Consensus 233 ~~~~-iiL~~NK~ 244 (327)
T 3ohm_A 233 QNSS-VILFLNKK 244 (327)
T ss_dssp TTCE-EEEEEECH
T ss_pred CCce-EEEEEECc
Confidence 3466 88999994
No 231
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.62 E-value=0.0024 Score=47.41 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=44.3
Q ss_pred EEEeeeCCc--eeEeecCCcccccHhHHhhhccccceEEEEEeccCCCC-cchHHHHHHHHH---cCCCeEEEEEeCC
Q psy9646 140 HVEYATENR--HYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ---IGVTNIVVFINKF 211 (211)
Q Consensus 140 ~~~~~~~~~--~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~---~~~~~~i~~inK~ 211 (211)
...+...+. .+.+.||||++.+...+......+|++++|.|...... .....++..+.. .+.| +++++||+
T Consensus 68 ~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~ 144 (191)
T 1oix_A 68 TRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKS 144 (191)
T ss_dssp EEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECG
T ss_pred EEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECc
Confidence 344444554 34569999998876666666678899999999754422 111223333332 2445 78899995
No 232
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.52 E-value=0.0028 Score=52.29 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=44.2
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEecc-------CCCC----cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT-------DGAM----PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~-------~~~~----~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
...+.+.||+|++.|-.....-...+|++++|+|.. +... ......++.+.. .++| +|++.||+
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiLvgNK~ 260 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNKF 260 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE-EEEEEECH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe-EEEEEECc
Confidence 457889999999999887778889999999999986 1111 122233333332 3566 88999994
No 233
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.48 E-value=0.0044 Score=47.16 Aligned_cols=63 Identities=16% Similarity=0.057 Sum_probs=38.5
Q ss_pred ceeEeecCCcccccHhHHhh-hccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMIT-GTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~-~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
.++.++||+|.+.....+.. -...+|++++|.|...... .....++..+.. .++| +|+|.||+
T Consensus 87 ~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~ 155 (211)
T 2g3y_A 87 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKS 155 (211)
T ss_dssp EEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECT
T ss_pred eEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECh
Confidence 35678999998763222222 2467899999999754321 112223333432 2577 88999996
No 234
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.37 E-value=0.0079 Score=48.32 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=39.6
Q ss_pred CCceeEeecCCcccc--cHhHHh------hhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHAD--YIKNMI------TGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~--~~~~~~------~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.++++||||... ....+. ..+..+|.+++|+|+..+ ......++.... ..+...+++||+
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~ 249 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKM 249 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCC
Confidence 456799999999766 322222 244578999999999754 233333343333 455345789985
No 235
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.32 E-value=0.0035 Score=50.41 Aligned_cols=60 Identities=20% Similarity=0.136 Sum_probs=42.9
Q ss_pred eeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCc--chHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 149 HYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMP--QTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 149 ~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~--~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+.+.|| ++.|..-....++.+|++++|+|+...... .-..++..++..++| +++|+||+
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~p-iilv~NK~ 125 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELE-TVMVINKM 125 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCE-EEEEECCG
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEeHH
Confidence 5667777 666665555678999999999999876422 223455555667777 77999995
No 236
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.19 E-value=0.014 Score=49.44 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=39.6
Q ss_pred CCceeEeecCCcccc----cHhHH--hhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC-CeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHAD----YIKNM--ITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV-TNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~----~~~~~--~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~-~~~i~~inK~ 211 (211)
.++.++++||||... ++.++ ...+..+|.+++|+|+..+. .....++.. ..++ +...+++||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~-~~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAF-KEAVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHH-HTTSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHH-hhcccCCeEEEEeCC
Confidence 456789999999664 33333 22334689999999997764 222233322 2235 5456789995
No 237
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.10 E-value=0.0055 Score=50.33 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=33.5
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+..+.|+||||..... ..-...+|++++|+|+..+...+. + +. .-...| .++++||+
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~--i-~~-~il~~~-~ivVlNK~ 222 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQG--I-KR-GIIEMA-DLVAVTKS 222 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSC-SEEEECCC
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHH--h-HH-HHHhcC-CEEEEeee
Confidence 56789999999975322 222468999999999876532221 1 11 123556 56889996
No 238
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.98 E-value=0.011 Score=44.03 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=45.9
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC-----CCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG-----VTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~-----~~~~i~~inK~ 211 (211)
.+.++++|||+.. ......++..+|.+++++.....- ......++.++..+ .+ +.+++||+
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVE-ARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCE-EEEEECSB
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCc-EEEEEecc
Confidence 4678999999875 345567778899999999987666 66677777777653 45 56789984
No 239
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.83 E-value=0.018 Score=45.00 Aligned_cols=66 Identities=9% Similarity=0.050 Sum_probs=43.7
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..+.++++|||+..........++..+|.+++++.....-.......++.++..+.+.+-+++|++
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~ 192 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMS 192 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 456789999998643221122233368999999987655445556677778778888333788974
No 240
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.76 E-value=0.011 Score=43.87 Aligned_cols=63 Identities=16% Similarity=0.047 Sum_probs=34.9
Q ss_pred ceeEeecCCcccccHhHH-hhhccccceEEEEEeccCCCC-cchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNM-ITGTSQMDGAILVVAATDGAM-PQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~-~~~~~~~d~~~~vvd~~~~~~-~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
.++.++||+|.+.....+ ..-...+|++++|.|...... .....++..+.. .++| ++++.||+
T Consensus 56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p-iilV~NK~ 124 (192)
T 2cjw_A 56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKS 124 (192)
T ss_dssp EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECT
T ss_pred EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCe-EEEEEech
Confidence 356789999976521111 112346799999999764321 112223333332 2567 88999996
No 241
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.73 E-value=0.0042 Score=47.79 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=46.4
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..+.++++|||+.... ....++..+|.+++++.+...-......+.+.+...+++.+.+++||+
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~ 193 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKV 193 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEE
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCC
Confidence 4567999999885433 455667889999999987533334455666777788887677889974
No 242
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=95.70 E-value=0.0067 Score=47.39 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=25.2
Q ss_pred ccceEEEEEeccCC--CC-cchHHHHHHHH----HcCCCeEEEEEeCC
Q psy9646 171 QMDGAILVVAATDG--AM-PQTREHLLLAK----QIGVTNIVVFINKF 211 (211)
Q Consensus 171 ~~d~~~~vvd~~~~--~~-~~~~~~~~~~~----~~~~~~~i~~inK~ 211 (211)
.+|++++|+|+... .. .....++..+. ..++| +++|.||+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~ 208 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKC 208 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECG
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCC-EEEEEEcc
Confidence 68999999999875 22 22223333332 24677 88999995
No 243
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.46 E-value=0.0094 Score=45.58 Aligned_cols=63 Identities=16% Similarity=0.307 Sum_probs=45.0
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+.++++|||+... ..+..++..+|.+++++.+...-.......++.+...+.+.+-+++||+
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~ 173 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRY 173 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecC
Confidence 45689999998644 4556777889999999987543334455667777777777566788973
No 244
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.44 E-value=0.007 Score=45.73 Aligned_cols=58 Identities=14% Similarity=0.058 Sum_probs=35.0
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+..++++||||.... ..... ...+.+++|+|+..+... .+......+.| .++++||+
T Consensus 107 ~~~d~iiidt~G~~~~--~~~~~-~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~-~iiv~NK~ 164 (221)
T 2wsm_A 107 SDCDLLLIENVGNLIC--PVDFD-LGENYRVVMVSVTEGDDV----VEKHPEIFRVA-DLIVINKV 164 (221)
T ss_dssp TTCSEEEEEEEEBSSG--GGGCC-CSCSEEEEEEEGGGCTTH----HHHCHHHHHTC-SEEEEECG
T ss_pred CCCCEEEEeCCCCCCC--Cchhc-cccCcEEEEEeCCCcchh----hhhhhhhhhcC-CEEEEecc
Confidence 4567889999995110 00011 245789999999876422 22233334677 56899995
No 245
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.36 E-value=0.0071 Score=50.57 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=24.5
Q ss_pred ceeEeecCCcccccHh-------HHhhhccccceEEEEEeccC
Q psy9646 148 RHYSHTDCPGHADYIK-------NMITGTSQMDGAILVVAATD 183 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~-------~~~~~~~~~d~~~~vvd~~~ 183 (211)
.++.|+||||+..+.. .....++.+|++++|+|+.+
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 4689999999876433 55677889999999999864
No 246
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.30 E-value=0.0069 Score=50.07 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=28.7
Q ss_pred ceeEeecCCcccccH-------hHHhhhccccceEEEEEeccC
Q psy9646 148 RHYSHTDCPGHADYI-------KNMITGTSQMDGAILVVAATD 183 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~-------~~~~~~~~~~d~~~~vvd~~~ 183 (211)
.++.|+||||+.++. ...+..++.+|++++|+|+.+
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 479999999987653 234456789999999999976
No 247
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.25 E-value=0.013 Score=47.11 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=32.8
Q ss_pred hhccccceEEEEEeccCCCCcch--HHHHHHHHHcCCCeEEEEEeCC
Q psy9646 167 TGTSQMDGAILVVAATDGAMPQT--REHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 167 ~~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..++.+|++++|+|+.+...... .+++..+...++| +++|+||+
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~-~ilV~NK~ 120 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVE-PVIVFNKI 120 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCE-EEEEECCG
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCC-EEEEEEcc
Confidence 35789999999999987643322 3455666777888 67899996
No 248
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.21 E-value=0.04 Score=46.59 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=37.0
Q ss_pred CCceeEeecCCcccccHhHHhh------hccccceEEEEEeccCCCCcchHHHHHHHH-HcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMIT------GTSQMDGAILVVAATDGAMPQTREHLLLAK-QIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~------~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~-~~~~~~~i~~inK~ 211 (211)
.++.++++||||...+...+.. .+..+|.+++|+|+..+. .....++... ..++. -+++||+
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~~l~i~--gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFNEALPLT--GVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHHHHSCCC--CEEEECT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHhccCCCe--EEEEecC
Confidence 4567999999996554322222 234678999999997652 2222223222 23433 2578985
No 249
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.01 E-value=0.013 Score=45.68 Aligned_cols=64 Identities=16% Similarity=0.300 Sum_probs=44.7
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..+.++++|||+... .....++..+|.+++++.+...-.......++.+...+.+.+-+++|++
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~ 172 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRI 172 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEE
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccC
Confidence 346789999998644 4556677889999999886433334455566777777776565788873
No 250
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.00 E-value=0.0008 Score=55.84 Aligned_cols=62 Identities=10% Similarity=0.010 Sum_probs=37.5
Q ss_pred eeEeecCCccccc-------HhHHhhhc---cccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 149 HYSHTDCPGHADY-------IKNMITGT---SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 149 ~~~~iDtPG~~~~-------~~~~~~~~---~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+.++||||..+. ..+....+ ...|.+++++++.+.........+..+...+.| +++++||+
T Consensus 213 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~-~~~v~~k~ 284 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRS-FVCYMANE 284 (369)
T ss_dssp TCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTT
T ss_pred CeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCce-EEEEecCC
Confidence 4899999995432 12222223 678999999998533221111113344455666 88899985
No 251
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.93 E-value=0.054 Score=45.91 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=37.8
Q ss_pred CCceeEeecCCcccc----cHhHH--hhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHAD----YIKNM--ITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~----~~~~~--~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.++++||||... ++.++ +.....+|.++||+||..|. .....++.... ..+...+++||+
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~-~~~i~gVIlTKl 249 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKE-ATPIGSIIVTKL 249 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHH-SCTTEEEEEECC
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHh-hCCCeEEEEECC
Confidence 346789999999543 22222 12334579999999998752 22334343332 234345789996
No 252
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.54 E-value=0.078 Score=42.40 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=46.7
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+-++++|||+....... ......+|.+++|+.+...........++.+...+.+.+=+++|++
T Consensus 214 yD~VIIDtpp~~~~~d~-~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~ 276 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSDA-AVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGV 276 (299)
T ss_dssp CSEEEEECCCTTTCTHH-HHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEEC
T ss_pred CCEEEEcCCCCchhHHH-HHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 56899999987543322 2334678999999998777777778888888888877444678974
No 253
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.51 E-value=0.051 Score=45.94 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=38.0
Q ss_pred CCceeEeecCCcccc------cHhHHhh--hccccceEEEEEeccCCCCcchHHHHHHHH-HcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHAD------YIKNMIT--GTSQMDGAILVVAATDGAMPQTREHLLLAK-QIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~------~~~~~~~--~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~-~~~~~~~i~~inK~ 211 (211)
.++.++++||||... ++.++.. .....|.++||+|+..|. .....++... ..+ + ..+++||+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~~-~-~gVIlTKl 248 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDLASRFHQASP-I-GSVIITKM 248 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHCS-S-EEEEEECG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch--HHHHHHHHHhcccC-C-cEEEEecc
Confidence 356789999999544 3444322 222458999999998752 2333444443 333 3 45789995
No 254
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=94.48 E-value=0.052 Score=43.23 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=46.3
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+-++++|||....... +......+|.+++|+.+...-.....+.++.+...+.+.+=+|+||+
T Consensus 202 yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v 264 (286)
T 3la6_A 202 YDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSI 264 (286)
T ss_dssp CSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred CCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCc
Confidence 4589999998754432 33445678999999998665556666778888888887666788974
No 255
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.36 E-value=0.0022 Score=53.19 Aligned_cols=62 Identities=10% Similarity=0.036 Sum_probs=37.2
Q ss_pred eeEeecCCccccc-------HhHHhh---hccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 149 HYSHTDCPGHADY-------IKNMIT---GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 149 ~~~~iDtPG~~~~-------~~~~~~---~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+.++||||..+. ..+... .....+..++++++...........+..+...+.| +++++||+
T Consensus 212 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~-~~~v~nk~ 283 (368)
T 3h2y_A 212 ESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRA-FTCHFSNR 283 (368)
T ss_dssp SCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTT
T ss_pred CeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCce-EEEEecCc
Confidence 4899999996432 122222 24678999999998533222221123334445666 88899985
No 256
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.23 E-value=0.025 Score=42.69 Aligned_cols=63 Identities=6% Similarity=0.018 Sum_probs=43.6
Q ss_pred CCceeEeecCCcc-cccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHc-CCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGH-ADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQI-GVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~-~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~-~~~~~i~~inK~ 211 (211)
..+.++++|||+. ... .+..++..+|.+++++.+...-.......++.+... +.+ +.+++|++
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~ 130 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTII 130 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSB
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEec
Confidence 3467999999987 433 344567789999999987543334455666777664 566 66789974
No 257
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.20 E-value=0.033 Score=42.62 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=44.2
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC--CCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG--VTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~--~~~~i~~inK~ 211 (211)
.+.++++|||+.... ....++..+|.+++++.....-.......++.+...+ .+.+-+++|++
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~ 182 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRA 182 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEEST
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecC
Confidence 456899999986432 4556678899999999875433345566777777766 34466789984
No 258
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.01 E-value=0.056 Score=42.12 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=42.5
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcC--CCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIG--VTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~--~~~~i~~inK~ 211 (211)
..+-++++|||+... .....++..+|.+++++.+...-.......++.+...+ .+ +.+++|++
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~-~~vv~N~~ 207 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLP-IFLIITRF 207 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCC-EEEEEEEE
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCC-EEEEEecc
Confidence 346689999998643 33556677799999999874433334455666776664 34 56788973
No 259
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.01 E-value=0.043 Score=46.21 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=27.6
Q ss_pred cceEEEEEecc-CCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 172 MDGAILVVAAT-DGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 172 ~d~~~~vvd~~-~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++++++++++. .+..+.+..+++.+.. +++ +|+|+||+
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~-iIlVinK~ 177 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKA 177 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSE-EEEEEEST
T ss_pred eeEEEEEecCcccCCCHHHHHHHHHHhc-cCc-EEEEEEcc
Confidence 44677777765 6888877777777754 777 88999996
No 260
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.66 E-value=0.1 Score=44.02 Aligned_cols=36 Identities=11% Similarity=0.035 Sum_probs=27.0
Q ss_pred eEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 174 GAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 174 ~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+++|++|+..++...+.++++.+. .++| +|+++||+
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~-~~~~-vI~Vi~Kt 186 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLD-SKVN-IIPIIAKA 186 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTC-SCSE-EEEEESCG
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHh-hCCC-EEEEEcch
Confidence 577889999999998888888776 5666 88999995
No 261
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.61 E-value=0.067 Score=42.16 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=44.2
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.++++|||+...... +......+|.+++++.+...-.......++.+...+.+.+=+++|++
T Consensus 192 yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~ 254 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRM 254 (271)
T ss_dssp CSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEE
T ss_pred CCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 5689999998654322 22233568999999998666556667777888878887443688974
No 262
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.28 E-value=0.048 Score=44.44 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=26.8
Q ss_pred eCCceeEeecCCcccccHhHHhhhccccceEEEEEeccCC
Q psy9646 145 TENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDG 184 (211)
Q Consensus 145 ~~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~ 184 (211)
..+.+++|+||||..+-.. .....+|++++++|+..+
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~ 181 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAG 181 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC-
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCc
Confidence 3577899999999764322 223689999999997543
No 263
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.99 E-value=0.12 Score=41.63 Aligned_cols=43 Identities=21% Similarity=0.364 Sum_probs=31.6
Q ss_pred hccccceEEEEEeccCCCCcch--HHHHHHHHHcCCCeEEEEEeCC
Q psy9646 168 GTSQMDGAILVVAATDGAMPQT--REHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 168 ~~~~~d~~~~vvd~~~~~~~~~--~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.+|.+++|+|+..+..... .+++..+...++| .++++||+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~-~vivlnK~ 127 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQ-PIICITKM 127 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCE-EEEEEECG
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECC
Confidence 5789999999999987776554 2233344557888 56899995
No 264
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.59 E-value=0.047 Score=42.16 Aligned_cols=63 Identities=10% Similarity=0.160 Sum_probs=41.5
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCC--------CeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGV--------TNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~--------~~~i~~inK~ 211 (211)
.+.++++|||+... .....++..+|.+++++++...-.......++.+...+. ..+-+++|++
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~ 183 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRY 183 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEE
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecC
Confidence 56799999998543 356677789999999998743333344445555554431 2355788873
No 265
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=92.50 E-value=0.11 Score=41.06 Aligned_cols=63 Identities=8% Similarity=-0.014 Sum_probs=40.3
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHH------cCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQ------IGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~------~~~~~~i~~inK~ 211 (211)
.+.++++|||+..... ...++..+|.+++++.+...-.......++.+.. .+.+.+-+++|++
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~ 222 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLV 222 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEES
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEE
Confidence 4568999999865432 2345556999999999865544444555555544 2555333678874
No 266
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=92.42 E-value=0.1 Score=43.56 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=28.2
Q ss_pred ceeEeecCCcccc-------cHhHHhhhccccceEEEEEeccC
Q psy9646 148 RHYSHTDCPGHAD-------YIKNMITGTSQMDGAILVVAATD 183 (211)
Q Consensus 148 ~~~~~iDtPG~~~-------~~~~~~~~~~~~d~~~~vvd~~~ 183 (211)
.++.++|+||... +.......+..+|++++|+|+..
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4688999999653 34456777789999999999864
No 267
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=91.97 E-value=0.13 Score=42.53 Aligned_cols=37 Identities=11% Similarity=0.102 Sum_probs=29.7
Q ss_pred CceeEeecCCccccc-------HhHHhhhccccceEEEEEeccC
Q psy9646 147 NRHYSHTDCPGHADY-------IKNMITGTSQMDGAILVVAATD 183 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~-------~~~~~~~~~~~d~~~~vvd~~~ 183 (211)
..++.++||||+.++ ....+..+..+|++++|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 357899999998754 3456677899999999999975
No 268
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.84 E-value=0.17 Score=39.20 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=38.4
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHH------cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQ------IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~------~~~~~~i~~inK~ 211 (211)
..+.++++|||+..... ...++..+|.+++++.+...-.......++.+.. .+.+.+-+++|++
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~ 179 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMY 179 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESB
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeE
Confidence 45679999999864432 3455677999999998743322223334444432 2455223678874
No 269
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=91.64 E-value=0.092 Score=34.04 Aligned_cols=56 Identities=23% Similarity=0.115 Sum_probs=39.8
Q ss_pred EEEEecCCEEEE-eecCceeeEEEEEEEe-cceeccee-cccCceehhccCCCcccccccccc
Q psy9646 45 RGIVKKGMECEF-TGYGRQFKTTVTGIEM-FHKILDEA-QAGDQLGALVKGMKRDEVNRGLIM 104 (211)
Q Consensus 45 ~G~i~~g~~v~i-~p~~~~~~~~v~~i~~-~~~~~~~a-~~G~~v~~~l~~~~~~~v~~G~ii 104 (211)
...+++||.+.+ .|.+.....++.+|.- ..++++.| .+|+.+.+.+. ..+..|+++
T Consensus 27 rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~G~~i~~A~~~~~~v~i~~~----~~~~~~dil 85 (89)
T 4he6_A 27 RNHFRPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKFKVK----RPLFPYNMM 85 (89)
T ss_dssp SSCBCTTCEEEEESTTSCCEEEECCCEEETTSCEESCBCSTTCEEEEECS----SCCCTTCEE
T ss_pred cCCcCCCCEEEEEcCCCCcEEEEeHHeEcCCCCEeeEcCCCCeEEEEECC----CCCCCCCEE
Confidence 456788999975 7877556778888873 34689998 99999988554 234455543
No 270
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.41 E-value=0.15 Score=40.50 Aligned_cols=65 Identities=12% Similarity=0.050 Sum_probs=40.9
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
..+.++++|||+..... .+..++..+|.+++++.+...-.......++.++. .+++.+-+++||+
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~ 223 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRS 223 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecC
Confidence 35678999998864322 23456788999999998643322344455666654 3444222689985
No 271
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.91 E-value=0.48 Score=39.85 Aligned_cols=62 Identities=21% Similarity=0.308 Sum_probs=35.0
Q ss_pred CCceeEeecCCccccc----HhHH--hhhccccceEEEEEeccCCCCcchHHHHHHHH-HcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADY----IKNM--ITGTSQMDGAILVVAATDGAMPQTREHLLLAK-QIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~----~~~~--~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~-~~~~~~~i~~inK~ 211 (211)
.++.++++||||.... +.++ ......+|.+++|+|+..+ ......++... ..++. -+++||+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~~l~i~--GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVT--GLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHTCCC--EEEEESG
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHhcCCce--EEEEeCc
Confidence 4567899999995432 3322 1222357899999999754 11222222222 23333 3578984
No 272
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.18 E-value=0.33 Score=39.18 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=25.0
Q ss_pred CCceeEeecCCcccccH----hHHh---hhc-----cccceEEEEEeccCC
Q psy9646 146 ENRHYSHTDCPGHADYI----KNMI---TGT-----SQMDGAILVVAATDG 184 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~----~~~~---~~~-----~~~d~~~~vvd~~~~ 184 (211)
.++-++++||||..... .++. ..+ ..+|.+++++++..+
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~ 240 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG 240 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc
Confidence 45679999999965432 2211 111 237899999999744
No 273
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=89.69 E-value=0.13 Score=42.33 Aligned_cols=51 Identities=14% Similarity=-0.014 Sum_probs=33.5
Q ss_pred ccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 158 HADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+++|.+........+|++++|+|+.+.......++.+.+ .+.| +++|+||+
T Consensus 58 ~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~p-iilV~NK~ 108 (369)
T 3ec1_A 58 DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNP-ILLVGNKA 108 (369)
T ss_dssp -CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSC-EEEEEECG
T ss_pred HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCC-EEEEEECh
Confidence 556766666666788999999999876543333333332 2556 77899995
No 274
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.03 E-value=1.1 Score=35.59 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=24.7
Q ss_pred CCceeEeecCCccccc----HhHHhhhc--cccceEEEEEeccCC
Q psy9646 146 ENRHYSHTDCPGHADY----IKNMITGT--SQMDGAILVVAATDG 184 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~----~~~~~~~~--~~~d~~~~vvd~~~~ 184 (211)
.++.++++||||.... +.++.... ..+|.+++++|+..+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~ 223 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG 223 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc
Confidence 4567999999985432 22221111 247888999998743
No 275
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=86.67 E-value=0.14 Score=45.07 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=32.5
Q ss_pred CCceeEeecCCcccccHh------HHhhhccccceEEEEEeccCCCCcchHHHHHHHH
Q psy9646 146 ENRHYSHTDCPGHADYIK------NMITGTSQMDGAILVVAATDGAMPQTREHLLLAK 197 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~------~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~ 197 (211)
.+..+.++||||..+..+ ....++...-..++|+|+..++..++..++..+.
T Consensus 89 ~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~ 146 (592)
T 1f5n_A 89 PGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVT 146 (592)
T ss_dssp TTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHH
T ss_pred CCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHH
Confidence 467899999999764322 1222222211237888888888888777655543
No 276
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=86.47 E-value=1.1 Score=33.55 Aligned_cols=66 Identities=15% Similarity=0.030 Sum_probs=35.7
Q ss_pred CCceeEeecCCcccc--cH---hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHAD--YI---KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~--~~---~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++-++++||||.-. .. ..+.-+....+.+++++.+..+-..+....++.++..+.+..=+++|++
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~ 177 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDV 177 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 356799999997542 11 1111111111247777776433223445556666677777443678974
No 277
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=86.39 E-value=1.2 Score=34.02 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=25.1
Q ss_pred cccceEEEEEeccCCCCcchHHHH----HHHHH----cCCCeEEEEEeC
Q psy9646 170 SQMDGAILVVAATDGAMPQTREHL----LLAKQ----IGVTNIVVFINK 210 (211)
Q Consensus 170 ~~~d~~~~vvd~~~~~~~~~~~~~----~~~~~----~~~~~~i~~inK 210 (211)
..+|++|||||+.+......++-+ +.+.. .++| ++|+.||
T Consensus 124 ~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gap-LLVlANK 171 (227)
T 3l82_B 124 EVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCI 171 (227)
T ss_dssp HHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSC-EEEEEEE
T ss_pred cCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCe-EEEEeCC
Confidence 468999999999866332233322 22211 4677 7678897
No 278
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=86.22 E-value=0.48 Score=37.22 Aligned_cols=66 Identities=12% Similarity=-0.057 Sum_probs=35.9
Q ss_pred CCceeEeecCCcccccHhH-HhhhccccceEEEEEeccCCCCcchHHHHHHHHH----cCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKN-MITGTSQMDGAILVVAATDGAMPQTREHLLLAKQ----IGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~-~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~----~~~~~~i~~inK~ 211 (211)
.++.+++|||||....... +......+|.+++++.+...-.......++.+.. .+.+.+-+++|+.
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~ 187 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSR 187 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECC
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecC
Confidence 3567999999985321100 1112357899999987632222222333444433 2555344678874
No 279
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=86.08 E-value=0.51 Score=36.48 Aligned_cols=66 Identities=14% Similarity=0.020 Sum_probs=36.6
Q ss_pred CCceeEeecCCcccccHhH-HhhhccccceEEEEEeccCCCCcchHHHHHHHHHc----CCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIKN-MITGTSQMDGAILVVAATDGAMPQTREHLLLAKQI----GVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~-~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~----~~~~~i~~inK~ 211 (211)
.++.++++||||......- +......+|.+++++.+...-.......++.+... +.+.+-+++|++
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~ 184 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSR 184 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECC
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecC
Confidence 3467999999985321100 11122468999999886432222333344555442 455345678874
No 280
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=85.63 E-value=0.21 Score=41.17 Aligned_cols=48 Identities=13% Similarity=-0.004 Sum_probs=29.6
Q ss_pred cccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHH--cCCCeEEEEEeCC
Q psy9646 159 ADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQ--IGVTNIVVFINKF 211 (211)
Q Consensus 159 ~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~--~~~~~~i~~inK~ 211 (211)
++|.+....-...+|++++|+|+.+.. ..+...+.+ .+.| +++|+||+
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p-~ilV~NK~ 106 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNK-VLLVGNKA 106 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSC-EEEEEECG
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCc-EEEEEECh
Confidence 456555555556778999999997532 111111222 2566 77999995
No 281
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.12 E-value=1 Score=36.10 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=33.4
Q ss_pred CCceeEeecCCcccccHh-------HHhhhc-----cccceEEEEEeccCCCCcchHHHHHH-HHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHADYIK-------NMITGT-----SQMDGAILVVAATDGAMPQTREHLLL-AKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~-------~~~~~~-----~~~d~~~~vvd~~~~~~~~~~~~~~~-~~~~~~~~~i~~inK~ 211 (211)
.++.++++||||...... .....+ ...|.+++++|+..+. .....++. ....++. - +++||+
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a~~~~~~~~i~-g-vVlTk~ 259 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAVNVT-G-IILTKL 259 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHSCCC-E-EEEECG
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHHHHHHhcCCCC-E-EEEeCC
Confidence 455689999999533221 122222 2368889999996331 11112222 2235555 2 567884
No 282
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=84.67 E-value=0.13 Score=40.63 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=26.9
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEecc
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT 182 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~ 182 (211)
.+.++++|||+.. ...+..++..+|.+++++...
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 3568999999874 445667888999999998864
No 283
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=83.42 E-value=0.97 Score=36.93 Aligned_cols=41 Identities=7% Similarity=0.045 Sum_probs=31.3
Q ss_pred ccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 171 QMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 171 ~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+|.+++|+.+....-..+.+.++.+...+++..-+++|++
T Consensus 234 ~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v 274 (354)
T 2woj_A 234 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQL 274 (354)
T ss_dssp TTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecC
Confidence 57889999886544445677788888889999766789974
No 284
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=82.45 E-value=1.4 Score=34.55 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=28.4
Q ss_pred ccceEEEEEec-cCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 171 QMDGAILVVAA-TDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 171 ~~d~~~~vvd~-~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+.++++++|. ..+..+.+.+.++.+... ++ +|+++||+
T Consensus 111 Ral~~lllldep~~gL~~lD~~~l~~L~~~-~~-vI~Vi~K~ 150 (270)
T 3sop_A 111 RVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VN-IIPVIAKA 150 (270)
T ss_dssp SCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SE-EEEEETTG
T ss_pred eeeeeeEEEecCCCcCCHHHHHHHHHHHhc-Cc-EEEEEecc
Confidence 45777777774 477888888888877665 55 77888884
No 285
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=82.32 E-value=0.77 Score=38.03 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=38.0
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEeccCCC-------CcchHHHHHHHHHcCCCe----EEEEEeC
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA-------MPQTREHLLLAKQIGVTN----IVVFINK 210 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~-------~~~~~~~~~~~~~~~~~~----~i~~inK 210 (211)
++.++++|||.... ..+..++..+|.+++++.+..-- ...-.+.++.++..+.+. ++.++|+
T Consensus 247 ~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~ 319 (403)
T 3ez9_A 247 DYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSK 319 (403)
T ss_dssp GCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC
T ss_pred cCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEec
Confidence 46789999998654 34566777899999999753110 022333455555555332 3456776
No 286
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=81.49 E-value=1.4 Score=35.03 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=23.6
Q ss_pred ceEEEEEecc-CCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 173 DGAILVVAAT-DGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 173 d~~~~vvd~~-~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
++++++++.. .++.+.+.++++.+. .+++ +++++||.
T Consensus 128 ~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~-iilV~~K~ 165 (301)
T 2qnr_A 128 HCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAKA 165 (301)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHHT-TTSC-EEEEECCG
T ss_pred hheeeeecCcccCCCHHHHHHHHHHH-hcCC-EEEEEEeC
Confidence 4566677654 357776665555553 3456 78899984
No 287
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=79.43 E-value=2.4 Score=33.92 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=24.9
Q ss_pred cccceEEEEEeccCCCCcchHHHH----HHH---HH-cCCCeEEEEEeC
Q psy9646 170 SQMDGAILVVAATDGAMPQTREHL----LLA---KQ-IGVTNIVVFINK 210 (211)
Q Consensus 170 ~~~d~~~~vvd~~~~~~~~~~~~~----~~~---~~-~~~~~~i~~inK 210 (211)
..+|++|||||+.+..--..++-+ +.+ .. .++| ++|+.||
T Consensus 209 ~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~ap-LLVfANK 256 (312)
T 3l2o_B 209 EVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCI 256 (312)
T ss_dssp HHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCC-EEEEEEE
T ss_pred cCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCe-EEEEeCC
Confidence 568999999999765432232211 223 11 4788 7678886
No 288
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=78.95 E-value=1.1 Score=39.14 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=28.7
Q ss_pred ceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 173 DGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 173 d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.+++|+.+...........++.+...|++..-+++|++
T Consensus 199 t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v 237 (589)
T 1ihu_A 199 TRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGV 237 (589)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEE
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCC
Confidence 468888876544446677778888888988666789974
No 289
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=76.99 E-value=2.1 Score=34.26 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=29.6
Q ss_pred ceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 173 DGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 173 d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.+++|.-+..-.....++.++.++..|+|..=+++|++
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~ 261 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQV 261 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCC
Confidence 578888876544456677888999999999666788973
No 290
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=76.40 E-value=1.8 Score=33.73 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=22.3
Q ss_pred CCccccc-HhHHhhhccccceEEEEEeccCCCC
Q psy9646 155 CPGHADY-IKNMITGTSQMDGAILVVAATDGAM 186 (211)
Q Consensus 155 tPG~~~~-~~~~~~~~~~~d~~~~vvd~~~~~~ 186 (211)
-|||... .+++...++.+|+++.|+||+.+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~ 36 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFA 36 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTT
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCc
Confidence 3898754 4789999999999999999986543
No 291
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=76.17 E-value=0.88 Score=39.72 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=29.9
Q ss_pred ccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 171 QMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 171 ~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+|.+++|+.+....-......++.+...|++..-+++|++
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~ 529 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNS 529 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 45888888876544445567777888889988666789974
No 292
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=75.63 E-value=1.7 Score=34.51 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=25.2
Q ss_pred CCceeEeecCCccccc----HhHHhhhcc--ccceEEEEEeccCC
Q psy9646 146 ENRHYSHTDCPGHADY----IKNMITGTS--QMDGAILVVAATDG 184 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~----~~~~~~~~~--~~d~~~~vvd~~~~ 184 (211)
.+..++++||||.... +.++..-+. ..|..++++|+..+
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 4567999999996543 223322332 35778999998654
No 293
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=75.01 E-value=1.5 Score=33.47 Aligned_cols=63 Identities=14% Similarity=0.012 Sum_probs=37.8
Q ss_pred CCceeEeecCCcccc-cHhHHhhhcccc-------ceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHAD-YIKNMITGTSQM-------DGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~-~~~~~~~~~~~~-------d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.+.++|+||.-. -+. .+...+ .-+++|+++..+-..++...++.+...+++..=+++|++
T Consensus 109 ~~~D~vlIEgaggl~~p~~---~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~ 179 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYS---DHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCN 179 (228)
T ss_dssp SSCSEEEEEEEEETTCBSS---SSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred ccCCEEEEECCCccccccc---cchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECc
Confidence 456688999987321 100 111222 237888998765545555566667778888444578874
No 294
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=74.39 E-value=4.2 Score=33.27 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=26.0
Q ss_pred hhccccceEEEEEeccCCCCcchHH---HHHHHHHcCCCeEEEEEeCC
Q psy9646 167 TGTSQMDGAILVVAATDGAMPQTRE---HLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 167 ~~~~~~d~~~~vvd~~~~~~~~~~~---~~~~~~~~~~~~~i~~inK~ 211 (211)
..++.+|.+++| +|.... ..... ++..+...++| .++|+||+
T Consensus 126 ~i~anvD~v~iv-~a~~P~-~~~~~i~r~L~~a~~~~~~-~iivlNK~ 170 (358)
T 2rcn_A 126 PIAANIDQIVIV-SAILPE-LSLNIIDRYLVGCETLQVE-PLIVLNKI 170 (358)
T ss_dssp EEEECCCEEEEE-EESTTT-CCHHHHHHHHHHHHHHTCE-EEEEEECG
T ss_pred HHHhcCCEEEEE-EeCCCC-CCHHHHHHHHHHHHhcCCC-EEEEEECc
Confidence 345788998865 565533 22222 33444567888 46899995
No 295
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=72.95 E-value=3 Score=33.85 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=30.5
Q ss_pred cceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 172 MDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 172 ~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.+.+++|.-+..-.....++.++.++..|+|..=+++|++
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~ 276 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQL 276 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCC
Confidence 4678888876555556677888999999999666789973
No 296
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=71.70 E-value=3.1 Score=33.41 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=28.4
Q ss_pred ceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 173 DGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 173 d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.+++|..+.......+++.++.++..|++..-+++|++
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~ 260 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQL 260 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEE
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 467777776544445677788889999998666789973
No 297
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=70.87 E-value=12 Score=31.27 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=40.2
Q ss_pred ceeEeecCCcccc---cHhHHhh--hccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeC
Q psy9646 148 RHYSHTDCPGHAD---YIKNMIT--GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210 (211)
Q Consensus 148 ~~~~~iDtPG~~~---~~~~~~~--~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK 210 (211)
.++++.|+||... ...+... ++...|..++ +++.. .+.+...+++.+...+.| +++++||
T Consensus 120 ~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p-~~lV~tk 184 (413)
T 1tq4_A 120 PNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKE-FYFVRTK 184 (413)
T ss_dssp TTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred CCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCC-eEEEEec
Confidence 3689999999642 1223222 3455566555 77654 456777788888888877 7789998
No 298
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=70.59 E-value=8.5 Score=33.76 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=36.7
Q ss_pred CceeEeecCCcccc------------cHhHHhhh-ccc-cceEEEEEeccCCCCcc-hHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHAD------------YIKNMITG-TSQ-MDGAILVVAATDGAMPQ-TREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~------------~~~~~~~~-~~~-~d~~~~vvd~~~~~~~~-~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.-.++++|.||... -+.++... +.. ...+++++++......+ ...+++.+...|.+ .|+|+||.
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~r-tI~VlTK~ 224 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDR-TIGILTKP 224 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCS-EEEEEECG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCc-eEEEecch
Confidence 45699999998442 23334444 233 35677777766554332 23455555455767 67899994
No 299
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=66.48 E-value=8.8 Score=30.85 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=34.5
Q ss_pred ceeEeecCCcccc----cHhHHhh--hccccceEEEEEeccCCCCcchHHHHHHHH-HcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHAD----YIKNMIT--GTSQMDGAILVVAATDGAMPQTREHLLLAK-QIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~----~~~~~~~--~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~-~~~~~~~i~~inK~ 211 (211)
+.+.++||+|... ++.++.. ..-..|-.++++|+..+. +....++... ..++. . +++||+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it-~-iilTKl 278 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKID-G-IILTKL 278 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCC-E-EEEECG
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCC-E-EEEeCc
Confidence 4467899999643 3333211 112468899999987662 2333334333 45655 4 678884
No 300
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=66.48 E-value=3.3 Score=34.02 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=25.6
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEec
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAA 181 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~ 181 (211)
.++.++++|||..... .+..++..+|.+++++..
T Consensus 243 ~~yD~ViiD~pp~~~~--~~~~~l~~aD~vliv~~p 276 (398)
T 3ez2_A 243 SDYDFILVDSGPHLDA--FLKNALASANILFTPLPP 276 (398)
T ss_dssp TTCSEEEEEECSCCSH--HHHHHHHHCSEEEEEECC
T ss_pred ccCCEEEEeCCCCccH--HHHHHHHHCCEEEEEecC
Confidence 3567999999986533 355567789999999975
No 301
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=64.67 E-value=5.9 Score=31.99 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=28.7
Q ss_pred ceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 173 DGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 173 d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.+++|.-+..-.....++.+..++..|++..-+|+|++
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~ 261 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQL 261 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCC
Confidence 467777765444445677788999999999767789973
No 302
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=62.65 E-value=14 Score=31.65 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=33.5
Q ss_pred CceeEeecCCcccc----cHhH---Hhhhcc-----ccceEEEEEeccCCCCcchHHHHHHH-HHcCCCeEEEEEeCC
Q psy9646 147 NRHYSHTDCPGHAD----YIKN---MITGTS-----QMDGAILVVAATDGAMPQTREHLLLA-KQIGVTNIVVFINKF 211 (211)
Q Consensus 147 ~~~~~~iDtPG~~~----~~~~---~~~~~~-----~~d~~~~vvd~~~~~~~~~~~~~~~~-~~~~~~~~i~~inK~ 211 (211)
++.++++||+|... ++.+ +...+. ..+-++|++|+..|... ...++.. ...++. . +++||+
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a--l~~ak~f~~~~~it-g-vIlTKL 448 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA--VSQAKLFHEAVGLT-G-ITLTKL 448 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH--HHHHHHHHHHTCCS-E-EEEECG
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH--HHHHHHHHhhcCCC-E-EEEEcC
Confidence 34588999999632 2222 222111 24678999998766321 2223333 345666 4 568884
No 303
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=62.26 E-value=5.1 Score=32.56 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=28.7
Q ss_pred ceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 173 DGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 173 d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
+.+++|.-+..-.....++.++.++..|++..-+|+|++
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~ 270 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQL 270 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCC
Confidence 567777766444445677788999999999766789974
No 304
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=56.63 E-value=22 Score=31.90 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=31.8
Q ss_pred HhHHhhhccccceEEEEEeccC--CC---------------CcchHHHHHHHHHcCCCeEEEEEe
Q psy9646 162 IKNMITGTSQMDGAILVVAATD--GA---------------MPQTREHLLLAKQIGVTNIVVFIN 209 (211)
Q Consensus 162 ~~~~~~~~~~~d~~~~vvd~~~--~~---------------~~~~~~~~~~~~~~~~~~~i~~in 209 (211)
..++....+.+|++|+++.... +. .....++++.+...+.| +|+|+|
T Consensus 418 ~~~a~~~A~~aDv~Iv~vg~~~gEg~~~~~g~~gDR~~l~Lp~~Q~~Li~~v~~~~~~-~VVVl~ 481 (713)
T 3zyz_A 418 TSSGASAARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSN-VIVVVH 481 (713)
T ss_dssp HHHHHHHHTTCSEEEEEEEECCBCTTCCBTTBCSSCSCSSCSTTHHHHHHHHHHHCSC-EEEEEE
T ss_pred HHHHHHHhhcCCEEEEEecccCCCCccccccCCCCcccccCChhHHHHHHHHHHhCCC-eEEEEe
Confidence 4566777889999999995432 22 12345677888888877 556664
No 305
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=55.39 E-value=6.5 Score=31.92 Aligned_cols=34 Identities=12% Similarity=-0.140 Sum_probs=25.2
Q ss_pred CceeEeecCCcccccHhHHhhhccccceEEEEEecc
Q psy9646 147 NRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT 182 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~ 182 (211)
.+.+++||||.... .....++..+|.+++++.+.
T Consensus 153 ~yD~VIID~pP~l~--~~~~~aL~~aD~viip~~~~ 186 (361)
T 3pg5_A 153 RYDVIFFDVGPSLG--PFNRTVLLGCDAFVTPTATD 186 (361)
T ss_dssp CCSEEEEECCSCCS--HHHHHHHTTCSEEEEEECCS
T ss_pred CCCEEEEECCCCcC--HHHHHHHHHCCEEEEEecCC
Confidence 56799999996432 33455667799999999874
No 306
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=54.31 E-value=24 Score=32.36 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=33.1
Q ss_pred cHhHHhhhccccceEEEEEecc-----CCC-------CcchHHHHHHHHHcCCCeEEEEEe
Q psy9646 161 YIKNMITGTSQMDGAILVVAAT-----DGA-------MPQTREHLLLAKQIGVTNIVVFIN 209 (211)
Q Consensus 161 ~~~~~~~~~~~~d~~~~vvd~~-----~~~-------~~~~~~~~~~~~~~~~~~~i~~in 209 (211)
.+.++..+.+.+|++|+++.-. +|. .....++++.+.+.+.| +|+|+|
T Consensus 563 ~~~~Av~~A~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP~~Q~~LI~aV~a~~~~-tVVVl~ 622 (845)
T 3abz_A 563 EIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPN-TVIVNQ 622 (845)
T ss_dssp HHHHHHHHHHTSSEEEEEEECCTTTSBTTBCCSSSCCCTTHHHHHHHHHHHCSC-EEEEEE
T ss_pred hHHHHHHHHhcCCEEEEEEecCCccccccCCcccccCCHHHHHHHHHHHHhCCC-EEEEEe
Confidence 4566778889999999999543 221 13455677888888877 666665
No 307
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=53.92 E-value=12 Score=26.77 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=31.8
Q ss_pred HhHHhhhccccceEEEEEecc--CCCCcchHHHHHHHHHcCCCeEEEEE
Q psy9646 162 IKNMITGTSQMDGAILVVAAT--DGAMPQTREHLLLAKQIGVTNIVVFI 208 (211)
Q Consensus 162 ~~~~~~~~~~~d~~~~vvd~~--~~~~~~~~~~~~~~~~~~~~~~i~~i 208 (211)
.++-..++..+|++|.++|.- ....+.+..=+-.+..+|+| ++++.
T Consensus 58 ~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKP-Vi~l~ 105 (161)
T 2f62_A 58 RQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKM-VLTFT 105 (161)
T ss_dssp HHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCE-EEEEC
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCE-EEEEE
Confidence 344578999999999999953 34455555445567788988 65543
No 308
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=53.02 E-value=18 Score=27.76 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=37.9
Q ss_pred CCceeEeecCCccc--cc----HhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHA--DY----IKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~--~~----~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
.++.+.++|.||.- .+ ..++--+-....-+|+|+++..+-...+...++.+...+++..=+++||+
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v 196 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSW 196 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 34568899998732 11 11111111223457888888765445555556666777887444578874
No 309
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=52.08 E-value=18 Score=27.65 Aligned_cols=65 Identities=11% Similarity=-0.015 Sum_probs=38.2
Q ss_pred CCceeEeecCCcccc--c---HhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 146 ENRHYSHTDCPGHAD--Y---IKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~--~---~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..+.+.++|.+|.-. + ..++--+-....-+++|+++..+.-..+...++.++..+++ .=+++|++
T Consensus 130 ~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v 199 (242)
T 3qxc_A 130 KTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLK 199 (242)
T ss_dssp GTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCC
T ss_pred hcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCC
Confidence 345688888887321 0 01111111111237888888777445555566777778888 76789985
No 310
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=51.59 E-value=45 Score=26.29 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=32.4
Q ss_pred eeEeecCCccccc----HhH-------Hhhhc-cccceEEEEEeccCCCCcchHHHHHHH-HHcCCCeEEEEEeCC
Q psy9646 149 HYSHTDCPGHADY----IKN-------MITGT-SQMDGAILVVAATDGAMPQTREHLLLA-KQIGVTNIVVFINKF 211 (211)
Q Consensus 149 ~~~~iDtPG~~~~----~~~-------~~~~~-~~~d~~~~vvd~~~~~~~~~~~~~~~~-~~~~~~~~i~~inK~ 211 (211)
...++||+|.... +.+ +.+++ ...+.+++++|+..+.. ....++.. +..++. + +++||.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~t-~-iivTh~ 257 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGLT-G-VIVTKL 257 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCCS-E-EEEECT
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCCc-E-EEEECC
Confidence 4568999995422 211 11122 24577888999866642 22233333 345765 4 578874
No 311
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=50.12 E-value=25 Score=25.24 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=31.7
Q ss_pred hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEE
Q psy9646 163 KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVF 207 (211)
Q Consensus 163 ~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 207 (211)
+.=..++..||+++.++|+ ..+.+.+..=+-.+..+|+| ++++
T Consensus 73 ~~D~~~i~~aD~vVA~ldg-~~~D~GTa~EiGyA~algKP-Vv~l 115 (167)
T 1s2d_A 73 QNDLTGISNATCGVFLYDM-DQLDDGSAFXIGFMRAMHKP-VILV 115 (167)
T ss_dssp HHHHHHHHHCSEEEEEEES-SSCCHHHHHHHHHHHHTTCC-EEEE
T ss_pred HHHHHHHHhCCEEEEECCC-CCCCCCceeehhhHhhCCCe-EEEE
Confidence 3445678999999999996 55666776656677889998 5443
No 312
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=49.44 E-value=15 Score=26.92 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=29.3
Q ss_pred ceeEeecCCcccccHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 148 RHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 148 ~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
..++++||+|.-.. .... -...+..+.++|+..+...... ... ..+.| .++++||+
T Consensus 119 ~d~~~id~~g~i~~-~~s~--~~~~~~~~~v~~~~~~~~~~~~-~~~---~~~~~-~iiv~NK~ 174 (226)
T 2hf9_A 119 IDLLFIENVGNLIC-PADF--DLGTHKRIVVISTTEGDDTIEK-HPG---IMKTA-DLIVINKI 174 (226)
T ss_dssp CSEEEEECCSCSSG-GGGC--CCSCSEEEEEEEGGGCTTTTTT-CHH---HHTTC-SEEEEECG
T ss_pred CCEEEEeCCCCccC-cchh--hhccCcEEEEEecCcchhhHhh-hhh---HhhcC-CEEEEecc
Confidence 36888999984211 1111 1234566788886544322111 111 13567 56889995
No 313
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=47.10 E-value=8.1 Score=32.61 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=28.7
Q ss_pred CceeEeecCCcccccHh-----HHhhhccc--cceEEEEEeccCCCCcchHHHHHHH
Q psy9646 147 NRHYSHTDCPGHADYIK-----NMITGTSQ--MDGAILVVAATDGAMPQTREHLLLA 196 (211)
Q Consensus 147 ~~~~~~iDtPG~~~~~~-----~~~~~~~~--~d~~~~vvd~~~~~~~~~~~~~~~~ 196 (211)
+.+++|+||||..+-.. ..+.++.. ++..|+= ....+...+..++...
T Consensus 139 ~~~vvllDTeG~~~~~~~~~~d~~ifal~~lLSs~~IyN--~~~~i~~~~l~~L~~~ 193 (447)
T 3q5d_A 139 KVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYN--LSQNVQEDDLQHLQLF 193 (447)
T ss_dssp EEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHCSEEEEE--ESSSCCHHHHHHHHHH
T ss_pred cceEEEEcCCcccccccchhhhHHHHHHHHHHhhHHHHh--hcccccHHHHHHHHHH
Confidence 46899999999765432 34445543 5555444 4456666665555543
No 314
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=45.41 E-value=16 Score=29.69 Aligned_cols=34 Identities=18% Similarity=-0.008 Sum_probs=25.8
Q ss_pred CCceeEeecCCcccccHhHHhhhccccceEEEEEec
Q psy9646 146 ENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAA 181 (211)
Q Consensus 146 ~~~~~~~iDtPG~~~~~~~~~~~~~~~d~~~~vvd~ 181 (211)
..+.++++|||.. ....+...+..+|.+++++.+
T Consensus 258 ~~yD~VIID~p~~--~~~~~~~~l~~aD~vivv~~~ 291 (373)
T 3fkq_A 258 DNYDEIIVDLPFS--LEIEKLKLLSKAWRIIVVNDG 291 (373)
T ss_dssp SCCSEEEEECCCC--CCHHHHHHHTTCSEEEEEECC
T ss_pred CCCCEEEEeCCCC--CCHHHHHHHHHCCEEEEEecC
Confidence 4567999999843 334566778889999999876
No 315
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=45.29 E-value=30 Score=24.75 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=31.3
Q ss_pred HhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEE
Q psy9646 162 IKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVF 207 (211)
Q Consensus 162 ~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 207 (211)
.+.=..++..+|+++.++|+. .....+..=+-.+...|+| ++++
T Consensus 60 ~~~D~~~i~~aD~viA~ldg~-~~D~Gt~~EiG~A~a~gkP-Vi~~ 103 (162)
T 3ehd_A 60 ALADTENVLASDLLVALLDGP-TIDAGVASEIGVAYAKGIP-VVAL 103 (162)
T ss_dssp HHHHHHHHHTCSEEEEECCSS-SCCHHHHHHHHHHHHTTCC-EEEE
T ss_pred HHHHHHHHHHCCEEEEECCCC-CCCCCHHHHHHHHHHCCCE-EEEE
Confidence 345557899999999999843 3456665555777889998 5444
No 316
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=44.44 E-value=28 Score=24.75 Aligned_cols=43 Identities=16% Similarity=0.085 Sum_probs=30.6
Q ss_pred hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEe
Q psy9646 163 KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFIN 209 (211)
Q Consensus 163 ~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~in 209 (211)
..-...+..||+++..++ .....+..=+-.+..+|+| ++++-+
T Consensus 69 ~~d~~~i~~aD~vva~~~---~~d~Gt~~EiGyA~algKP-Vi~l~~ 111 (165)
T 2khz_A 69 EQDLNWLQQADVVVAEVT---QPSLGVGYELGRAVALGKP-ILCLFR 111 (165)
T ss_dssp HHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHTCSS-EEEEEC
T ss_pred HHHHHHHHhCCEEEEECC---CCCCCHHHHHHHHHHCCCE-EEEEEc
Confidence 344577899999999887 5556665555677889999 655433
No 317
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=40.81 E-value=28 Score=24.70 Aligned_cols=43 Identities=19% Similarity=0.085 Sum_probs=30.7
Q ss_pred hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEE
Q psy9646 163 KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVF 207 (211)
Q Consensus 163 ~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 207 (211)
+.=..++..||+++.++|+ ..+.+++..=+-.+..+|+| ++++
T Consensus 70 ~~D~~~i~~aD~vvA~ldg-~~~D~GT~~EiGyA~A~gkP-Vv~~ 112 (157)
T 1f8y_A 70 NNDLNGIKTNDIMLGVYIP-DEEDVGLGMELGYALSQGKY-VLLV 112 (157)
T ss_dssp HHHHHHHHTSSEEEEECCG-GGCCHHHHHHHHHHHHTTCE-EEEE
T ss_pred HHhHHHHHhCCEEEEEcCC-CCCCccHHHHHHHHHHCCCe-EEEE
Confidence 3445778999999999994 33556665555677889988 5444
No 318
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=38.57 E-value=40 Score=23.85 Aligned_cols=42 Identities=17% Similarity=0.044 Sum_probs=31.0
Q ss_pred cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEE
Q psy9646 161 YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVV 206 (211)
Q Consensus 161 ~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~ 206 (211)
....-...+..||+++..++ .....+..-+-.+..+|+| +++
T Consensus 58 i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~algkP-V~~ 99 (152)
T 4fyk_A 58 IHEQNLNWLQQADVVVAEVT---QPSLGVGYELGRAVALGKP-ILC 99 (152)
T ss_dssp HHHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHTTCC-EEE
T ss_pred HHHHHHHHHHHCCEEEEeCC---CCCCCHHHHHHHHHHcCCe-EEE
Confidence 34556678899999999887 5566666656777889999 544
No 319
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.30 E-value=91 Score=20.82 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=32.0
Q ss_pred CcEEEEEEEEEEEEecCCEEEEeecC-------ceeeEEEEEEEecceecceecccCceeh
Q psy9646 35 RGTVVTGRLERGIVKKGMECEFTGYG-------RQFKTTVTGIEMFHKILDEAQAGDQLGA 88 (211)
Q Consensus 35 ~G~v~~G~v~~G~i~~g~~v~i~p~~-------~~~~~~v~~i~~~~~~~~~a~~G~~v~~ 88 (211)
+|.+..|.|.|-. -.-++.+.-.. ....-+-+.+..++++..++..||.|.+
T Consensus 30 rgr~l~G~VvS~K--M~KTivV~ve~~~~hpkY~K~~kr~kk~~aHDe~~n~~~vGD~V~I 88 (113)
T 3j20_R 30 HGRVFEGIVVSDK--PRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINAKVGDKVLI 88 (113)
T ss_dssp CSCEEEEEEEECC--STTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTSEEEE
T ss_pred eeEEEEEEEEecc--CCceEEEEEEEEEEcCcccEEEECceEEEEECCCCCCCCCCCEEEE
Confidence 5678889888864 33344332211 1123345566676665778999999986
No 320
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}
Probab=34.56 E-value=1e+02 Score=21.89 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=33.0
Q ss_pred cHhHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCe
Q psy9646 161 YIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTN 203 (211)
Q Consensus 161 ~~~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~ 203 (211)
|......-..++|+.+++-. ..+.+.+..-.+.|.+.+.|.
T Consensus 63 y~~Rt~~NV~DSDgTLI~~~--g~lsGGT~lT~~~a~~~~KP~ 103 (158)
T 3imk_A 63 YSKRTEKNVLDSDGTLIISH--GILKGGSALTEFFAEQYKKPC 103 (158)
T ss_dssp HHHHHHHHHHTSSEEEEEES--SSCCHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHhhhhcCeEEEEec--CCCCCchHHHHHHHHHhCCCE
Confidence 55667777889999988874 467788888889999999883
No 321
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=34.54 E-value=32 Score=22.92 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=25.6
Q ss_pred hhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEE
Q psy9646 167 TGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVV 206 (211)
Q Consensus 167 ~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~ 206 (211)
..++.+|+++++++...--..--..-++.+++.|.| +|.
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkp-Iig 72 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKP-IIT 72 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCC-EEE
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCC-EEE
Confidence 667889999999876433222223334777888988 643
No 322
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=34.32 E-value=58 Score=29.15 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=29.9
Q ss_pred hHHhhhccccceEEEEEeccCC--C-----------CcchHHHHHHHH----HcCCCeEEEEEe
Q psy9646 163 KNMITGTSQMDGAILVVAATDG--A-----------MPQTREHLLLAK----QIGVTNIVVFIN 209 (211)
Q Consensus 163 ~~~~~~~~~~d~~~~vvd~~~~--~-----------~~~~~~~~~~~~----~~~~~~~i~~in 209 (211)
.++....+.+|++|+++....+ . .....++++.+. ..+.| +|+|+|
T Consensus 436 ~~a~~~a~~aDvvIv~vg~~~gEg~Dr~~~~~~l~Lp~~q~~LI~~v~~~~~~~~~~-vVVVl~ 498 (721)
T 2x41_A 436 KEIHKLAKKNDVAVIVISRISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKK-VIVLLN 498 (721)
T ss_dssp HHHHHHHHHCSEEEEEEECCCBTTCCCCSSBTTTBCCHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred HHHHHHHhcCCEEEEEEeccccccccccCCCCCccCCHHHHHHHHHHHHHHHHhCCC-EEEEEe
Confidence 5666777899999999864322 1 123445667776 67777 666664
No 323
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=32.12 E-value=59 Score=20.06 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=29.3
Q ss_pred hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEe
Q psy9646 163 KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFIN 209 (211)
Q Consensus 163 ~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~in 209 (211)
+++..+++.-.+-++++..+... .....+..+|...++| ++.+-+
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip-~~~v~s 61 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGIS-VSMVES 61 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCC-EEEESC
T ss_pred HHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCC-EEEECC
Confidence 56667777666777777654444 4445567778889999 544433
No 324
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=28.71 E-value=47 Score=23.02 Aligned_cols=32 Identities=6% Similarity=-0.046 Sum_probs=21.9
Q ss_pred EEEEEEEEecCCEEEEeec--CceeeEEEEEEEe
Q psy9646 41 GRLERGIVKKGMECEFTGY--GRQFKTTVTGIEM 72 (211)
Q Consensus 41 G~v~~G~i~~g~~v~i~p~--~~~~~~~v~~i~~ 72 (211)
..+.++.+++||.|.+.+. +.....+|.+|..
T Consensus 85 ~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~ 118 (145)
T 1at0_A 85 TFVFADRIEEKNQVLVRDVETGELRPQRVVKVGS 118 (145)
T ss_dssp EEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEE
T ss_pred EEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEE
Confidence 4577888888888887665 3345666777654
No 325
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=26.90 E-value=1.7e+02 Score=20.72 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=28.7
Q ss_pred CcEEEEEEEEEEEEecCCEEEEeecC-------ceeeEEEEEEEecceecceecccCceeh
Q psy9646 35 RGTVVTGRLERGIVKKGMECEFTGYG-------RQFKTTVTGIEMFHKILDEAQAGDQLGA 88 (211)
Q Consensus 35 ~G~v~~G~v~~G~i~~g~~v~i~p~~-------~~~~~~v~~i~~~~~~~~~a~~G~~v~~ 88 (211)
+|++..|.|.+-. -.-++.+.-.. ....-+-+.+..++++..++..||.|.|
T Consensus 67 Rgr~l~G~VVS~K--MdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I 125 (156)
T 3u5c_L 67 RGKILTGTVVSTK--MHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTV 125 (156)
T ss_dssp EEEEEEEEEEECC--STTEEEEEEEEEEEEGGGTEEEEEEEEEEEECCTTSCCCTTCEEEE
T ss_pred eeEEEEEEEEeec--CCCeEEEEEEEEeecCccceEEECceEEEEECCCcCcCCCCCEEEE
Confidence 3556666666543 23344432111 1122345566666666667999999976
No 326
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=26.13 E-value=54 Score=28.06 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=35.5
Q ss_pred cccccH--hHHhhhccccceEEEEEecc-----CCCC----------------cchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 157 GHADYI--KNMITGTSQMDGAILVVAAT-----DGAM----------------PQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 157 G~~~~~--~~~~~~~~~~d~~~~vvd~~-----~~~~----------------~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
|-++|+ +...+++. .|++++|.-.+ .|.. ..-.+|++-++++|+| ++|++|+.
T Consensus 295 GaEKF~dIKCR~~gl~-P~avVlVATvRALK~hGG~~~~~l~~enl~al~~G~~NL~kHIen~~~fGvp-vVVaiN~F 370 (543)
T 3do6_A 295 GAEKFIDFVSRVGGFY-PNAAVLVATVRALKYHGGANLKNIHEENLEALKEGFKNLRVHVENLRKFNLP-VVVALNRF 370 (543)
T ss_dssp HHHHHHHTHHHHHTCC-CSEEEEEECHHHHHHHTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEECC
T ss_pred chHhhcCccccccCCC-CCEEEEEeehHHHHhcCCCChhhcCccCHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEeCC
Confidence 344553 56667766 78888886432 2221 2345788889999999 67899973
No 327
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=26.04 E-value=79 Score=21.64 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=28.6
Q ss_pred hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEe
Q psy9646 163 KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFIN 209 (211)
Q Consensus 163 ~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~in 209 (211)
+++..+++.-.+-++++..+.....-...+...|...++| ++.+-+
T Consensus 47 ~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP-~~~v~s 92 (135)
T 2aif_A 47 NEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTP-YVFVRS 92 (135)
T ss_dssp HHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCC-EEEESC
T ss_pred HHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCc-EEEECC
Confidence 4566666666667777765433322236677788888999 544443
No 328
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=25.86 E-value=71 Score=21.90 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=30.1
Q ss_pred hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEe
Q psy9646 163 KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFIN 209 (211)
Q Consensus 163 ~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~in 209 (211)
+++..+++.-.+-++++..+.........+..+|...++| ++.+-+
T Consensus 38 ~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP-~~~v~s 83 (134)
T 2ale_A 38 NEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVP-YVFVPS 83 (134)
T ss_dssp HHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCC-EEEESC
T ss_pred hHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCC-EEEECC
Confidence 4566666666677777766544433456677888899999 544433
No 329
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=25.09 E-value=65 Score=21.41 Aligned_cols=46 Identities=9% Similarity=0.047 Sum_probs=26.7
Q ss_pred hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEe
Q psy9646 163 KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFIN 209 (211)
Q Consensus 163 ~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~in 209 (211)
+++..++..-.+-++++..+.....-...+...|...++| ++.+-+
T Consensus 33 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp-~~~~~s 78 (119)
T 1rlg_A 33 NETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVP-YIYVKS 78 (119)
T ss_dssp HHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCC-EEEESC
T ss_pred HHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCC-EEEeCC
Confidence 4566666654555555554333322345666778888999 545443
No 330
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=23.40 E-value=71 Score=21.37 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=27.7
Q ss_pred hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEE
Q psy9646 163 KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVF 207 (211)
Q Consensus 163 ~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 207 (211)
+++..++..-.+-++++..+.....-...+..+|...++| ++.+
T Consensus 26 ~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP-~~~v 69 (121)
T 2lbw_A 26 KEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVP-YIFI 69 (121)
T ss_dssp HHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCC-EEEC
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCc-EEEE
Confidence 4566666655666666665444433355677788889999 5443
No 331
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=23.34 E-value=58 Score=28.04 Aligned_cols=52 Identities=25% Similarity=0.379 Sum_probs=34.4
Q ss_pred ccccH--hHHhhhccccceEEEEEecc-----CCCC----------------cchHHHHHHHHHcCCCeEEEEEeCC
Q psy9646 158 HADYI--KNMITGTSQMDGAILVVAAT-----DGAM----------------PQTREHLLLAKQIGVTNIVVFINKF 211 (211)
Q Consensus 158 ~~~~~--~~~~~~~~~~d~~~~vvd~~-----~~~~----------------~~~~~~~~~~~~~~~~~~i~~inK~ 211 (211)
-++|+ +...+++. .|++++|.-.+ .|.. ..-.+|++-++++|+| ++|++|+.
T Consensus 310 aEKF~dIKcR~~gl~-P~avVlVATvRALK~hGG~~~~~l~~en~~al~~G~~NL~kHien~~~fGvp-vVVaiN~F 384 (557)
T 3pzx_A 310 AEKFYDVKCRYAGFK-PDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVP-AVVAINAF 384 (557)
T ss_dssp HHHHHHTHHHHHTCC-CCEEEEEECHHHHHHHTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHTTTCC-EEEEEECC
T ss_pred hhhhcCCcccccCCC-CCEEEEEeehHHHHhcCCCChhhcCccCHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEeCC
Confidence 44453 56667766 68888886322 2221 2345788888999999 67899973
No 332
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=22.85 E-value=1.1e+02 Score=20.72 Aligned_cols=46 Identities=9% Similarity=0.016 Sum_probs=27.1
Q ss_pred hHHhhhccccceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEe
Q psy9646 163 KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFIN 209 (211)
Q Consensus 163 ~~~~~~~~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~in 209 (211)
+++..++..-.+-++++............+..+|...++| ++.+=+
T Consensus 30 ~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip-~~~v~s 75 (126)
T 2xzm_U 30 HEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIK-YVSVPK 75 (126)
T ss_dssp HHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCC-EEEESC
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCC-EEEECC
Confidence 4555666554555566654443334445567788889999 544433
No 333
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=21.95 E-value=1.2e+02 Score=21.50 Aligned_cols=52 Identities=15% Similarity=0.131 Sum_probs=32.2
Q ss_pred CcEEEEEEEEEEEEecCCEEEEeecC-------ceeeEEEEEEEecceecceecccCceeh
Q psy9646 35 RGTVVTGRLERGIVKKGMECEFTGYG-------RQFKTTVTGIEMFHKILDEAQAGDQLGA 88 (211)
Q Consensus 35 ~G~v~~G~v~~G~i~~g~~v~i~p~~-------~~~~~~v~~i~~~~~~~~~a~~G~~v~~ 88 (211)
+|.+..|.|.|-. -.-++.+.-.. .....+-+.+..++.+..++..||.|.|
T Consensus 66 Rgr~l~G~VVS~K--MdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDee~n~~kvGD~V~I 124 (157)
T 2xzm_Q 66 RGKIIKGLVISTK--MNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCFSVKEGDILVA 124 (157)
T ss_dssp CSCEEEEEEEECC--STTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTCEEEE
T ss_pred eeEEEEEEEEEec--CCccEEEEEEEEEecCccceEeecceeEEEECCCCCCCCCCCEEEE
Confidence 6778889888864 33344432111 1122345566666667778999999987
No 334
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=21.87 E-value=1.8e+02 Score=21.52 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=27.0
Q ss_pred cceEEEEEeccCCCCcchHHHHHHHHHcCCCeEEEEEe
Q psy9646 172 MDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFIN 209 (211)
Q Consensus 172 ~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~~i~~in 209 (211)
.+.+++.+++--|.......+...++..+.| ++.+++
T Consensus 75 ~k~I~l~InSPGG~v~ag~~I~~~i~~~~~p-V~t~v~ 111 (218)
T 1y7o_A 75 TKDIYLYVNTPGGSVSAGLAIVDTMNFIKAD-VQTIVM 111 (218)
T ss_dssp TSCEEEEEEECCBCHHHHHHHHHHHHHSSSC-EEEEEE
T ss_pred CCCEEEEEECcCCCHHHHHHHHHHHHhcCCC-EEEEEc
Confidence 5677888888666666677788888888877 555544
No 335
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=21.56 E-value=1.9e+02 Score=21.52 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=15.8
Q ss_pred cccceEEEEEeccCCCCcchHHHHHHHHHcCCC
Q psy9646 170 SQMDGAILVVAATDGAMPQTREHLLLAKQIGVT 202 (211)
Q Consensus 170 ~~~d~~~~vvd~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
..+|+++++ ... . ..+.++.+...++|
T Consensus 65 ~~vdgiIi~-~~~----~-~~~~~~~l~~~~iP 91 (288)
T 3gv0_A 65 GSADGVIIS-KIE----P-NDPRVRFMTERNMP 91 (288)
T ss_dssp TCCSEEEEE-SCC----T-TCHHHHHHHHTTCC
T ss_pred CCccEEEEe-cCC----C-CcHHHHHHhhCCCC
Confidence 567887764 211 1 12345667778888
No 336
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=20.20 E-value=1e+02 Score=21.19 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=19.2
Q ss_pred ecCCEEEE-eecCceeeEEEEEEEe
Q psy9646 49 KKGMECEF-TGYGRQFKTTVTGIEM 72 (211)
Q Consensus 49 ~~g~~v~i-~p~~~~~~~~v~~i~~ 72 (211)
++||.|.+ .|+|.....+|.+|..
T Consensus 105 ~vGD~v~v~~P~G~~~~~~I~~I~~ 129 (141)
T 2pn0_A 105 AQGDEIEWPKPGGGVLRVRIVEVTY 129 (141)
T ss_dssp BTTCEEEEECTTSSEEEEEEEEEEC
T ss_pred CCCCEEEEEcCCCCEEEEEEEEEEe
Confidence 57999988 7887446788999984
No 337
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Probab=20.03 E-value=2.4e+02 Score=22.36 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=33.1
Q ss_pred cHhHHhhhccccceEEEEEeccCCCCcch-HHHHHHHHHcCCCeEEEEE
Q psy9646 161 YIKNMITGTSQMDGAILVVAATDGAMPQT-REHLLLAKQIGVTNIVVFI 208 (211)
Q Consensus 161 ~~~~~~~~~~~~d~~~~vvd~~~~~~~~~-~~~~~~~~~~~~~~~i~~i 208 (211)
...+....+..+|.++++..-.-|-.... .-+++++++.|.. ++.++
T Consensus 70 ~~~eI~~~l~~aD~VFVtaGLGGGTGTGaAPVvAeiake~Gal-vVavV 117 (315)
T 3r4v_A 70 QIPALMDTIPEADFYIVCYSLGGGSGSVLGPLITGQLADRKAS-FVSFV 117 (315)
T ss_dssp GHHHHHHTSCCBSCEEEEEESSSSSHHHHHHHHHHHHHHTTCC-EEEEE
T ss_pred hHHHHHHhcCCCCEEEEEeccCCccccchHHHHHHHHHHcCCC-EEEEE
Confidence 44577888999999988887655544444 4477889999877 44444
Done!