RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9646
(211 letters)
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 232 bits (594), Expect = 7e-76
Identities = 75/103 (72%), Positives = 90/103 (87%)
Query: 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMIT 167
+LA+ AK K+Y +IDNAPEE+ARGITIN AHVEY+T RHY+HTDCPGHADY+KNMIT
Sbjct: 26 ILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMIT 85
Query: 168 GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
GT+ +DG ILVVAA DG MPQTREHLLLA+QIGV ++VV++NK
Sbjct: 86 GTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNK 128
Score = 185 bits (472), Expect = 2e-57
Identities = 74/107 (69%), Positives = 89/107 (83%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
+LL+ +DTYIP P RDL+KPF LPVE YSIPGRGTVVTG LERGI+KKG ECEF G+
Sbjct: 183 QKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHS 242
Query: 61 RQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ +T VTGIEMFHK LD A+AGD LGALV+G+KR+++ RGL+MAKP
Sbjct: 243 KNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKP 289
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 226 bits (578), Expect = 3e-73
Identities = 76/104 (73%), Positives = 85/104 (81%), Gaps = 1/104 (0%)
Query: 108 VLADKKL-AKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMI 166
V A + +VK Y DID APEE+ARGITIN AHVEY T RHYSH DCPGHADYIKNMI
Sbjct: 34 VAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMI 93
Query: 167 TGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
TG +QMDGAILVV+A DG MPQTREH+LLA+Q+GV IVVF+NK
Sbjct: 94 TGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNK 137
Score = 177 bits (452), Expect = 2e-54
Identities = 61/108 (56%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
ELL+ ID YIP PVRD+DKPF +PVE ++I GRGTV TGR+ERG VK G E E G
Sbjct: 200 WELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA 259
Query: 61 RQ-FKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ KT VTG+EM K L E AGD +G L++G+ R+EV RG ++AKP
Sbjct: 260 PETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKP 307
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 237 bits (607), Expect = 9e-73
Identities = 72/103 (69%), Positives = 83/103 (80%)
Query: 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMIT 167
VLA + + IDNAPEEKARGITIN +HVEY T RHY+H DCPGHADY+KNMIT
Sbjct: 319 VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMIT 378
Query: 168 GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
G +QMDGAILVVAATDG MPQTREH+LL +Q+GV I+VF+NK
Sbjct: 379 GAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 421
Score = 188 bits (478), Expect = 3e-55
Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
+EL +D+YIP+P R +DKPF LP+E +SI GRGTVVTGR+ERGI+K G E E G
Sbjct: 474 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 533
Query: 61 RQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
K+T TG+EMF K+LDE +AG+ +G L++G+KR+E+ RG ++AKP
Sbjct: 534 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 580
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 190 bits (485), Expect = 1e-58
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 112 KKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQ 171
K L ++ + D PE + RGITI++ + EN + D PGHAD I+ +++
Sbjct: 37 KVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96
Query: 172 MDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
+D A++VV A +G QT EH+L+ + IVV I K
Sbjct: 97 IDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVV-ITK 134
Score = 151 bits (382), Expect = 1e-43
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 2 ELLNQIDTYI--PQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGY 59
EL N I T + + +R+ + F +P++H + I G GTVVTG + +GIVK G E +
Sbjct: 178 ELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKV--L 235
Query: 60 GRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
T V I+ F + + EA+AGD++G ++G+ ++ RG I+
Sbjct: 236 PINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSK 283
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 179 bits (456), Expect = 5e-55
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 108 VLADKKLAKVK---QYADIDNAPEEKARGITINVAHVEYATEN-RHYSHTDCPGHADYIK 163
+ KKL + + PE + + + R S D PGH +
Sbjct: 31 IWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMA 90
Query: 164 NMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQIGVTNIVVFINK 210
M++G + MDGAILVVAA + PQTREH + IGV N+++ NK
Sbjct: 91 TMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNK 138
Score = 114 bits (288), Expect = 1e-30
Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 21/128 (16%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPG--------RGTVVTGRLERGIVKKGM 52
L+ I+ YI P RDL + + V ++ + +G V+ G + +G+ K
Sbjct: 180 DSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQ 239
Query: 53 ECE----------FTGYGRQFKTTVTGIEMFHKILDEAQAGDQLG---ALVKGMKRDEVN 99
E + T ++ I + EA+ G + L + + +
Sbjct: 240 EIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNL 299
Query: 100 RGLIMAKP 107
G I+
Sbjct: 300 LGSIITLA 307
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 177 bits (450), Expect = 2e-54
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 124 DNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATD 183
A +G + ++ E R+ D + +K++IT + D A+L +
Sbjct: 36 SLAANLGKKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIPP-Q 94
Query: 184 GAMPQTREHLLLAKQIGVTNIVVFINK 210
G T E ++ +G + ++ + +
Sbjct: 95 GLDAHTGECIIALDLLGFKHGIIALTR 121
Score = 153 bits (390), Expect = 1e-45
Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 1 MELLNQIDTYIPQPVRDLDK-PFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGY 59
+N++ I +L+ P + ++H +++ G+G VV G +++GI K + +
Sbjct: 171 KARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPL 230
Query: 60 GRQFKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
R + I+ +D A AG ++G +K ++ ++ RG I++
Sbjct: 231 DR--DIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISDK 276
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 166 bits (422), Expect = 6e-50
Identities = 39/112 (34%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 123 IDNAPEEKARGITINVAHVEYATEN-----------------------RHYSHTDCPGHA 159
D EE RGITI + + R S D PGH
Sbjct: 35 TDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHE 94
Query: 160 DYIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQIGVTNIVVFINK 210
+ M+ G S MDGAILV+AA + PQTREHL+ + IG NI++ NK
Sbjct: 95 ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNK 146
Score = 117 bits (295), Expect = 2e-31
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 23/129 (17%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGT--------VVTGRLERGIVKKGM 52
L+ I+ +IP P RD +KP + V ++ + GT V+ G + +G +K G
Sbjct: 188 DVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGD 247
Query: 53 ECEFTGYGRQ-----------FKTTVTGIEMFHKILDEAQAGDQLGA---LVKGMKRDEV 98
E E G T + ++ + ++EA G +G L + + ++
Sbjct: 248 EIEIRP-GVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDL 306
Query: 99 NRGLIMAKP 107
G ++ KP
Sbjct: 307 MAGNVVGKP 315
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 163 bits (414), Expect = 7e-49
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 24/111 (21%)
Query: 124 DNAPEEKARGITINVAHVEYATEN-----------------------RHYSHTDCPGHAD 160
D EE RGI+I + + + R S D PGH
Sbjct: 34 DRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHET 93
Query: 161 YIKNMITGTSQMDGAILVVAATDGA-MPQTREHLLLAKQIGVTNIVVFINK 210
+ M++G S MDGAILV+AA + PQT+EHL+ + +G+ I++ NK
Sbjct: 94 LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNK 144
Score = 118 bits (297), Expect = 9e-32
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 21/128 (16%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGT--------VVTGRLERGIVKKGM 52
LL I +IP P RD D + V ++ I GT V+ G + +G+ K G
Sbjct: 186 DVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGD 245
Query: 53 ECE----------FTGYGRQFKTTVTGIEMFHKILDEAQAGDQLG---ALVKGMKRDEVN 99
E E + + T + + + IL +A G +G L + + +
Sbjct: 246 EIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDAL 305
Query: 100 RGLIMAKP 107
G ++ P
Sbjct: 306 TGSVVGLP 313
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 126 bits (318), Expect = 2e-34
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 124 DNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATD 183
D EE+ RG+T+++ ++T +++ D PGH D++ N I G SQ D AIL V +
Sbjct: 87 DQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST 146
Query: 184 GAM-------PQTREHLLLAKQIGVTNIVVFINK 210
A QT+EH+LLA +G+ N+++ +NK
Sbjct: 147 NAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 180
Score = 76.9 bits (190), Expect = 9e-17
Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 15/120 (12%)
Query: 1 MELLNQID--TYIPQPVRDLDKPFYLPVEHTYS---IPGRGTVVTGRLERGIVKKGMECE 55
M L + D PF V +V+G+LE G ++ G
Sbjct: 244 MSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLT 303
Query: 56 FTGYGRQFKTTVTGIEMF--------HKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ V I++ H+ D A GD + ++ +++ G + A
Sbjct: 304 IYPSEQS--CIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASV 361
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 126 bits (318), Expect = 5e-34
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 124 DNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATD 183
D EE+ RG+T+++ ++T +++ D PGH D++ N I G SQ D AIL V +
Sbjct: 221 DQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST 280
Query: 184 GAM-------PQTREHLLLAKQIGVTNIVVFINK 210
A QT+EH+LLA +G+ N+++ +NK
Sbjct: 281 NAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 314
Score = 76.7 bits (189), Expect = 1e-16
Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 15/120 (12%)
Query: 1 MELLNQID--TYIPQPVRDLDKPFYLPVEHTYS---IPGRGTVVTGRLERGIVKKGMECE 55
M L + D PF V +V+G+LE G ++ G
Sbjct: 378 MSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLT 437
Query: 56 FTGYGRQFKTTVTGIEMF--------HKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ V I++ H+ D A GD + ++ +++ G + A
Sbjct: 438 IYPSEQS--CIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASV 495
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 126 bits (318), Expect = 6e-34
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 124 DNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATD 183
D EE+ARG+T++VA + ++ + Y D PGH D+I MI G S D A+LVV ++
Sbjct: 231 DTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ 290
Query: 184 GAM-------PQTREHLLLAKQIGVTNIVVFINK 210
QTREH L + +G++ IVV +NK
Sbjct: 291 NNFERGFLENGQTREHAYLLRALGISEIVVSVNK 324
Score = 83.6 bits (207), Expect = 4e-19
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Query: 3 LLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQ 62
LL+ +D + P + KP L ++ Y P TV GR+E G V+
Sbjct: 387 LLSALDQ-LVPPEKPYRKPLRLSIDDVYRSPRSVTVT-GRVEAGNVQVNQVLYDVSSQED 444
Query: 63 FKTTVTGIEMFH-KILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
V + A AGD + + ++ +++ G I++
Sbjct: 445 --AYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNY 488
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 122 bits (308), Expect = 4e-33
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 124 DNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATD 183
D+ EE+ +G T+ V + TE+R +S D PGH Y+ NMI G SQ D +LV++A
Sbjct: 97 DSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARR 156
Query: 184 GAM-------PQTREHLLLAKQIGVTNIVVFINK 210
G QTREH +LA+ G+ ++VV INK
Sbjct: 157 GEFEAGFERGGQTREHAVLARTQGINHLVVVINK 190
Score = 79.3 bits (196), Expect = 1e-17
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 3 LLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQ 62
LL +D+ + R ++ PF +P+ Y GT++ G++E G +KK +
Sbjct: 256 LLEYLDS-MTHLERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQT 312
Query: 63 FKTTVTGI-EMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIM 104
VT I + + + + GDQ+ V+G D V G ++
Sbjct: 313 --LEVTAIYDEADEEISSSICGDQVRLRVRGDDSD-VQTGYVL 352
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 118 bits (297), Expect = 1e-31
Identities = 42/95 (44%), Positives = 61/95 (64%), Gaps = 7/95 (7%)
Query: 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT 182
+D EE+ RG+TIN+ + + T+ ++ D PGH D++KNMITG SQ D AILVV+A
Sbjct: 59 LDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAK 118
Query: 183 DG-------AMPQTREHLLLAKQIGVTNIVVFINK 210
G QTREH++LAK +G+ ++V +NK
Sbjct: 119 KGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK 153
Score = 95.1 bits (237), Expect = 4e-23
Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 3 LLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQ 62
L +D + P + +DKP +P++ YSI G GTV GR+E G++K G + F G+
Sbjct: 215 LEEYLDQ-LELPPKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKV 273
Query: 63 FKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIM 104
V IE H +D+A+ GD +G V+G+++ ++ RG ++
Sbjct: 274 --GEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVV 313
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 108 bits (272), Expect = 4e-28
Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 7/95 (7%)
Query: 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT 182
+D E+ RGITI++A ++ T + D PGH D+IKNMITGTSQ D AIL++A
Sbjct: 60 LDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGG 119
Query: 183 DGAM-------PQTREHLLLAKQIGVTNIVVFINK 210
G QTREH LLA +GV ++V +NK
Sbjct: 120 VGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK 154
Score = 93.2 bits (232), Expect = 2e-22
Identities = 42/102 (41%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 3 LLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQ 62
LL ID I QP R DKP LP++ Y I G GTV GR+E G++K GM F G
Sbjct: 226 LLEAIDA-IEQPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVT 284
Query: 63 FKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIM 104
T V +EM H+ L++ GD +G VK + E+ RG +
Sbjct: 285 --TEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVC 324
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 103 bits (258), Expect = 4e-26
Identities = 38/88 (43%), Positives = 53/88 (60%)
Query: 123 IDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAAT 182
+D E+ +GITI+VA+ ++T R + D PGH Y +NM TG S D AI++V A
Sbjct: 79 VDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDAR 138
Query: 183 DGAMPQTREHLLLAKQIGVTNIVVFINK 210
G QTR H +A +G+ +IVV INK
Sbjct: 139 YGVQTQTRRHSYIASLLGIKHIVVAINK 166
Score = 39.2 bits (92), Expect = 6e-04
Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 18/90 (20%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPV------EHTYSIPGRGTVVTGRLERGIVKKGMEC 54
ME+L ++ PV + RG G L GIV KG E
Sbjct: 227 MEILETVEI----ASDRNYTDLRFPVQYVNRPNLNF----RG--FAGTLASGIVHKGDEI 276
Query: 55 EFTGYGRQFKTTVTGIEMFHKILDEAQAGD 84
G+ + V I F L++A G
Sbjct: 277 VVLPSGK--SSRVKSIVTFEGELEQAGPGQ 304
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function,
protein structure INI secsg, conserved hypothetical
protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP:
b.43.3.1
Length = 116
Score = 93.6 bits (233), Expect = 5e-25
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 13 QPVRDLDKPFY-LPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIE 71
+ KP + VE +I G+ ++ G +E G++ G + + + IE
Sbjct: 25 KIEILSKKPAGKVVVEEVVNIMGKDVII-GTVESGMIGVGFKVKGPSG----IGGIVRIE 79
Query: 72 MFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMA 105
+ ++ A AGD++G ++G K +V +G ++
Sbjct: 80 RNREKVEFAIAGDRIGISIEG-KIGKVKKGDVLE 112
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A;
translation termination, peptide release, PTC, P
biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo
sapiens}
Length = 204
Score = 74.9 bits (185), Expect = 5e-17
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 19 DKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILD 78
P LP+ Y GTVV G+LE G + KG + V GI D
Sbjct: 4 GSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHN--VEVLGILSDDVETD 59
Query: 79 EAQAGDQLGALVKGMKRDEVNRG 101
G+ L +KG++ +E+ G
Sbjct: 60 TVAPGENLKIRLKGIEEEEILPG 82
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 57.7 bits (140), Expect = 8e-11
Identities = 33/82 (40%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 131 ARGIT--INVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ 188
A GIT I V ++ + D PGH + G D ILVVAA DG MPQ
Sbjct: 38 AGGITQHIGAYQVT--VNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQ 95
Query: 189 TREHLLLAKQIGVTNIVVFINK 210
T E + AK V I+V INK
Sbjct: 96 TVEAINHAKAANVP-IIVAINK 116
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 55.4 bits (133), Expect = 2e-09
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 17/103 (16%)
Query: 124 DNAPEEKARGITI------------NVAHVEYATENRHYSHT----DCPGHADYIKNMIT 167
D +E+ RGITI + E + S D PGH D+ +
Sbjct: 58 DTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTA 117
Query: 168 GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
DGA++VV +G QT L A + VV INK
Sbjct: 118 ALRVTDGALVVVDTIEGVCVQTETVLRQALGERIK-PVVVINK 159
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 53.3 bits (129), Expect = 1e-08
Identities = 37/82 (45%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 131 ARGIT--INVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ 188
A GIT I HVE TEN + D PGHA + G D +LVVAA DG MPQ
Sbjct: 34 AGGITQHIGAYHVE--TENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQ 91
Query: 189 TREHLLLAKQIGVTNIVVFINK 210
T E + AK V +VV +NK
Sbjct: 92 TIEAIQHAKAAQVP-VVVAVNK 112
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 53.0 bits (128), Expect = 1e-08
Identities = 28/65 (43%), Positives = 31/65 (47%), Gaps = 17/65 (26%)
Query: 154 DCPGHADYIKNMITGTSQM--------DGAILVVAATDGAMPQTREHLLLAKQIGVTNIV 205
D PGHA + S M D ILVVAA DG M QT E + AK V IV
Sbjct: 58 DTPGHAAF--------SAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IV 108
Query: 206 VFINK 210
+ INK
Sbjct: 109 LAINK 113
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 52.7 bits (127), Expect = 2e-08
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 154 DCPGHADYIKNMIT-GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
D PGH + + G + D AIL+V +G PQT+E L + + VV NK
Sbjct: 76 DTPGHEAF-TTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANK 131
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 46.1 bits (108), Expect = 8e-07
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 8/32 (25%)
Query: 112 KKL-AKVKQYADIDNAPEEKARGITINVAHVE 142
KKL A +K YAD D+AP + I A +E
Sbjct: 23 KKLQASLKLYAD-DSAP-----ALAIK-ATME 47
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 44.1 bits (105), Expect = 2e-05
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 127 PEEKARGITINVAHVEYATENRHYSHT----DCPGHADYIKNMITGTSQMDGAILVVAAT 182
PE K T+ H D PG+ D++ + D A++ V+A
Sbjct: 53 PEAKLHRTTVRTG----VAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAE 108
Query: 183 DGAMPQTREHLLLAKQIGVTNIVVFINK 210
G T +A+++G+ + V + K
Sbjct: 109 AGVQVGTERAWTVAERLGLPRM-VVVTK 135
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 40.1 bits (94), Expect = 3e-04
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 129 EKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ 188
EK RGI++ + +++ ++ + D PGHAD+ ++ + +D A++V+ A G P+
Sbjct: 63 EKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPR 122
Query: 189 TREHLLLAKQIGVTNIVVFINK 210
T + + + + T I+ FINK
Sbjct: 123 TIKLMEVCRLRH-TPIMTFINK 143
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 38.9 bits (91), Expect = 6e-04
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 129 EKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGAMPQ 188
EK RGI+I + +++ + + D PGH D+ ++ + +D ++V+ A G +
Sbjct: 63 EKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR 122
Query: 189 TREHLLLAKQIGVTNIVVFINK 210
TR+ + + + T I+ F+NK
Sbjct: 123 TRKLMEVTRLRD-TPILTFMNK 143
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 35.1 bits (82), Expect = 0.013
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 2 ELLNQIDTYIPQPVRDLDKPFY-LPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYG 60
++L ++ IP P D + P L ++ + G V R++ G ++KG + + G
Sbjct: 171 DVLERLVRDIPPPEGDPEGPLQALIIDSWFD-NYLGVVSLIRIKNGTLRKGDKVKVMSTG 229
Query: 61 RQFKTTVTGI-EMFHKILDEAQAGDQLGALVKGMK 94
+ + GI E + G+ +G LV +K
Sbjct: 230 QTYNADRLGIFTPKQVDRTELKCGE-VGWLVCAIK 263
Score = 31.3 bits (72), Expect = 0.22
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 129 EKARGITI--NVAHVEY-ATENRHYSHT--DCPGHADYIKNMITGTSQMDGAILVVAATD 183
E+ RGITI ++Y A++ Y D PGH D+ + + +GA+LVV A
Sbjct: 47 ERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQ 106
Query: 184 GAMPQTREHLLLAKQIGVTNIVVFINK 210
G QT + A ++ + +V +NK
Sbjct: 107 GVEAQTLANCYTAMEMDLE-VVPVLNK 132
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 34.7 bits (81), Expect = 0.018
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 18/102 (17%)
Query: 2 ELLNQIDTYIPQPVRDLDKP--------FYLPVEHTYSIPGRGTVVTGRLERGIVKKGME 53
E+L I IP P D KP +Y P Y RG V R+ G VK G +
Sbjct: 173 EILEAIVNRIPPPKGDPQKPLKALIFDSYYDP----Y----RGAVAFVRIFDGEVKPGDK 224
Query: 54 CEFTGYGRQFKTTVTGI-EMFHKILDEAQAGDQLGALVKGMK 94
G++++ T G D+ AGD +G + +K
Sbjct: 225 IMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGD-VGYIAASIK 265
Score = 30.9 bits (71), Expect = 0.29
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 129 EKARGITI--NVAHVEY-ATENRHYSHT--DCPGHADYIKNMITGTSQMDGAILVVAATD 183
E+ RGIT+ + Y A + Y D PGH D+ + + +GA+L++ A+
Sbjct: 49 ERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQ 108
Query: 184 GAMPQTREHLLLAKQIGVTNIVVFINK 210
G QT + A + + I+ INK
Sbjct: 109 GIEAQTVANFWKAVEQDLV-IIPVINK 134
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 30.2 bits (69), Expect = 0.58
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 38/104 (36%)
Query: 129 EKARGITINVAHVEYAT-------ENRHYSHT----DCPGHADYIKNMITGTSQ------ 171
E+ RGITI A AT ++ H D PGH D+ T +
Sbjct: 56 EQERGITITSA----ATTAFWSGMAKQYEPHRINIIDTPGHVDF-------TIEVERSMR 104
Query: 172 -MDGAILVVAATDGAMPQT----REHLLLAKQIGVTNIVVFINK 210
+DGA++V A G PQ+ R+ A + V I F+NK
Sbjct: 105 VLDGAVMVYCAVGGVQPQSETVWRQ----ANKYKVPRI-AFVNK 143
>3ep1_A PGRP-HD - peptidoglycan recognition protein homologue; immune
system, thermophIle, model system; 2.10A {Alvinella
pompejana}
Length = 176
Score = 29.1 bits (65), Expect = 0.73
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 148 RHYSHTDCPGHADY 161
R + G A Y
Sbjct: 150 RLRTTPAMSGQAFY 163
>2bog_X Endoglucanase E-2; hydrolase, thermobifida fusca, TIM A/B fold,
glycoside hydrolase family 6; HET: MGL SGC BGC; 1.04A
{Thermomonospora fusca} PDB: 2bof_X* 2boe_X* 2bod_X*
1tml_A* 3ru8_X 3rpt_X
Length = 286
Score = 29.3 bits (65), Expect = 0.77
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 19/105 (18%)
Query: 84 DQLGALVKGMK--RDEVNRGLIMAKPVLADKKLAKVKQYADIDNA--------------- 126
D + + M+ + EV + A L ++ + Y D ++
Sbjct: 117 DLISLMSSCMQHVQQEVLETMAYAGKAL-KAGSSQARIYFDAGHSAWHSPAQMASWLQQA 175
Query: 127 -PEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTS 170
A GI N ++ + + Y+ + + TS
Sbjct: 176 DISNSAHGIATNTSNYRWTADEVAYAKAVLSAIGNPSLRAVIDTS 220
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 29.4 bits (67), Expect = 0.96
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 31/97 (31%)
Query: 129 EKARGITINVAHVEYAT----ENRHYSHTDCPGHADYIKNMITGTSQ-------MDGAIL 177
E+ RGITI A T ++ + D PGH D+ T + +DGAI+
Sbjct: 58 ERERGITITAA----VTTCFWKDHRINIIDTPGHVDF-------TIEVERSMRVLDGAIV 106
Query: 178 VVAATDGAMPQT----REHLLLAKQIGVTNIVVFINK 210
V ++ G PQ+ R+ A++ V I F NK
Sbjct: 107 VFDSSQGVEPQSETVWRQ----AEKYKVPRI-AFANK 138
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 1.1
Identities = 26/186 (13%), Positives = 54/186 (29%), Gaps = 46/186 (24%)
Query: 1 MELLNQIDTYIPQPVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKK---------- 50
+E+L ++ + +D + +H+ +I R + L R + K
Sbjct: 199 LEMLQKL-------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 51 -----------GMECE--FTGYGRQFKTTVTGIEMFHKILDEAQAG----DQLGALVK-- 91
+ C+ T +Q ++ H LD + L+K
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 92 GMKRD----EVNRGLIMAKPVLADKK---LAKVKQYADIDNAPEEKARGITINVAHVEYA 144
+ EV ++A+ LA + ++ ++N V
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN---VLEP 368
Query: 145 TENRHY 150
E R
Sbjct: 369 AEYRKM 374
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 29.0 bits (66), Expect = 1.2
Identities = 34/97 (35%), Positives = 42/97 (43%), Gaps = 31/97 (31%)
Query: 129 EKARGITINVAHVEYAT----ENRHYSHTDCPGHADYIKNMITGTSQ-------MDGAIL 177
E+ RGITI A AT E + D PGH D+ T + +DGA+
Sbjct: 56 EQDRGITITSA----ATTAAWEGHRVNIIDTPGHVDF-------TVEVERSLRVLDGAVT 104
Query: 178 VVAATDGAMPQT----REHLLLAKQIGVTNIVVFINK 210
V+ A G PQT R A GV I VF+NK
Sbjct: 105 VLDAQSGVEPQTETVWR----QATTYGVPRI-VFVNK 136
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 2.6
Identities = 39/218 (17%), Positives = 63/218 (28%), Gaps = 83/218 (38%)
Query: 12 PQPVRDLDKPFYL---PVEHTYSIPGRGTV------VTGRLERGIVKKGMECEFTGYGRQ 62
P D D YL P+ S P G + VT + G+
Sbjct: 222 PSNTPDKD---YLLSIPI----SCPLIGVIQLAHYVVT-------------AKLLGF--- 258
Query: 63 FKTTVTGIEMFHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYAD 122
T E+ + GA +GL+ A + A+ +
Sbjct: 259 -----TPGELRSYLK---------GATGHS-------QGLVTAVAI------AETDSWES 291
Query: 123 -IDNAPEEKARGITINVAHVEYATENRHYSHTDCP--GHADYIKNMITGTSQMDGAILVV 179
+ + IT+ + + Y +T P D ++N S M L +
Sbjct: 292 FFVSV----RKAITV-LFFIGVRC-YEAYPNTSLPPSILEDSLENNEGVPSPM----LSI 341
Query: 180 -----AATDGAMPQTREHLLLAKQI------GVTNIVV 206
+ +T HL KQ+ G N+VV
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Score = 27.3 bits (60), Expect = 5.1
Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 39/114 (34%)
Query: 24 LPVEHTYSIPGR-----GTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILD 78
+PV T+ G ++ R+ I++ ++ E T QFK T H ILD
Sbjct: 457 IPVYDTFD--GSDLRVLSGSISERIVDCIIRLPVKWETT---TQFKAT-------H-ILD 503
Query: 79 EAQAGDQ-LGALVKGMKRDEVNRG--LIMAKPVLADKKLAKVKQYADIDNAPEE 129
G LG L K G +I+A +D P++
Sbjct: 504 FGPGGASGLGVLTHRNKD---GTGVRVIVA---------------GTLDINPDD 539
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET:
GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP:
c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Length = 315
Score = 27.3 bits (60), Expect = 4.1
Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 17/96 (17%)
Query: 84 DQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYADI---------------DNAPE 128
D L R ++ V + Y D ++
Sbjct: 141 DALAMADCLSPDQRQERFDLVRYAVDTLTRDPAAAVYVDAGHSRWLSAEAMAARLNDVGV 200
Query: 129 EKARGITINVAHVEYATENRHYSHT--DCPGHADYI 162
+ARG ++NV++ E Y + Y+
Sbjct: 201 GRARGFSLNVSNFYTTDEEIGYGEAISGLTNGSHYV 236
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 25.9 bits (57), Expect = 8.3
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 8/47 (17%)
Query: 173 DGAILVVAATDGAMPQTRE------HLLLAKQIGVTNI--VVFINKF 211
DG + V + + E L + + ++ V+ +NK
Sbjct: 99 DGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKR 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.396
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,335,323
Number of extensions: 207147
Number of successful extensions: 606
Number of sequences better than 10.0: 1
Number of HSP's gapped: 554
Number of HSP's successfully gapped: 69
Length of query: 211
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 122
Effective length of database: 4,216,824
Effective search space: 514452528
Effective search space used: 514452528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)