RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9646
(211 letters)
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 137 bits (346), Expect = 2e-41
Identities = 75/101 (74%), Positives = 84/101 (83%)
Query: 110 ADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGT 169
A+ +VK Y DID APEE+ARGITIN AHVEY T RHYSH DCPGHADYIKNMITG
Sbjct: 29 AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGA 88
Query: 170 SQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
+QMDGAILVV+A DG MPQTREH+LLA+Q+GV IVVF+NK
Sbjct: 89 AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNK 129
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 123 bits (311), Expect = 7e-36
Identities = 46/118 (38%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 100 RGLIMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHA 159
R + + A+ K +D E+ RGITI++A ++ T + D PGH
Sbjct: 36 RTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHR 95
Query: 160 DYIKNMITGTSQMDGAILVVAATDGAM-------PQTREHLLLAKQIGVTNIVVFINK 210
D+IKNMITGTSQ D AIL++A G QTREH LLA +GV ++V +NK
Sbjct: 96 DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK 153
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2
{Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 98
Score = 115 bits (289), Expect = 3e-34
Identities = 66/92 (71%), Positives = 78/92 (84%)
Query: 16 RDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHK 75
RDL+KPF LPVE YSIPGRGTVVTG LERGI+KKG ECEF G+ + +T VTGIEMFHK
Sbjct: 2 RDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHK 61
Query: 76 ILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
LD A+AGD LGALV+G+KR+++ RGL+MAKP
Sbjct: 62 SLDRAEAGDNLGALVRGLKREDLRRGLVMAKP 93
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2
{Escherichia coli [TaxId: 562]}
Length = 92
Score = 114 bits (287), Expect = 6e-34
Identities = 51/90 (56%), Positives = 69/90 (76%)
Query: 18 LDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKIL 77
+DKPF LP+E +SI GRGTVVTGR+ERGI+K G E E G K+T TG+EMF K+L
Sbjct: 2 IDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLL 61
Query: 78 DEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
DE +AG+ +G L++G+KR+E+ RG ++AKP
Sbjct: 62 DEGRAGENVGVLLRGIKREEIERGQVLAKP 91
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 113 bits (283), Expect = 4e-32
Identities = 75/103 (72%), Positives = 90/103 (87%)
Query: 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMIT 167
+LA+ AK K+Y +IDNAPEE+ARGITIN AHVEY+T RHY+HTDCPGHADY+KNMIT
Sbjct: 26 ILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMIT 85
Query: 168 GTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
GT+ +DG ILVVAA DG MPQTREHLLLA+QIGV ++VV++NK
Sbjct: 86 GTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNK 128
Score = 24.6 bits (53), Expect = 8.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 1 MELLNQIDTYIPQP 14
+LL+ +DTYIP P
Sbjct: 183 QKLLDAVDTYIPVP 196
>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2
{Thermus thermophilus [TaxId: 274]}
Length = 100
Score = 108 bits (271), Expect = 2e-31
Identities = 53/95 (55%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 14 PVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQF-KTTVTGIEM 72
PVRD+DKPF +PVE ++I GRGTV TGR+ERG VK G E E G + KT VTG+EM
Sbjct: 1 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 60
Query: 73 FHKILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
K L E AGD +G L++G+ R+EV RG ++AKP
Sbjct: 61 HRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKP 95
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and
4 {Methanococcus maripaludis [TaxId: 39152]}
Length = 92
Score = 97.3 bits (242), Expect = 4e-27
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 16 RDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHK 75
R+ + F +P++H + I G GTVVTG + +GIVK G E + T V I+ F +
Sbjct: 1 RNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPIN--MSTKVRSIQYFKE 58
Query: 76 ILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ EA+AGD++G ++G+ ++ RG I+
Sbjct: 59 SVMEAKAGDRVGMAIQGVDAKQIYRGCILTSK 90
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 94
Score = 96.1 bits (239), Expect = 1e-26
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 19 DKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILD 78
DKP LP++ Y I G GTV GR+E G++K GM F G T V +EM H+ L+
Sbjct: 1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGV--TTEVKSVEMHHEQLE 58
Query: 79 EAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ GD +G VK + E+ RG +
Sbjct: 59 QGVPGDNVGFNVKNVSVKEIRRGNVCGDA 87
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 98.4 bits (244), Expect = 4e-26
Identities = 43/100 (43%), Positives = 62/100 (62%), Gaps = 7/100 (7%)
Query: 118 KQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAIL 177
K +D EE+ RG+TIN+ + + T+ ++ D PGH D++KNMITG SQ D AIL
Sbjct: 51 KFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAIL 110
Query: 178 VVAATDGA-------MPQTREHLLLAKQIGVTNIVVFINK 210
VV+A G QTREH++LAK +G+ ++V +NK
Sbjct: 111 VVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK 150
>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 95
Score = 90.8 bits (225), Expect = 1e-24
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 19 DKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILD 78
DKP +P++ YSI G GTV GR+E G++K G + F G+ V IE H +D
Sbjct: 3 DKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKV--GEVRSIETHHTKMD 60
Query: 79 EAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+A+ GD +G V+G+++ ++ RG ++ P
Sbjct: 61 KAEPGDNIGFNVRGVEKKDIKRGDVVGHP 89
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
factor ERF2, post-G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 84.1 bits (208), Expect = 5e-22
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 16 RDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHK 75
R ++ PF +P+ Y GT++ G++E G +KK + + T + +
Sbjct: 4 RKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIY-DEADE 60
Query: 76 ILDEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ + GDQ+ V+G D V G ++
Sbjct: 61 EISSSICGDQVRLRVRGDDSD-VQTGYVLTST 91
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 121
Score = 80.5 bits (198), Expect = 2e-20
Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 21/115 (18%)
Query: 14 PVRDLDKPFYLPVEHTYSIPG--------RGTVVTGRLERGIVKKGMECEFTGYGR---- 61
P RD +KP + V ++ + G V+ G + +G +K G E E
Sbjct: 1 PKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEH 60
Query: 62 ------QFKTTVTGIEMFHKILDEAQAGDQLGALVK---GMKRDEVNRGLIMAKP 107
T + ++ + ++EA G +G K + + ++ G ++ KP
Sbjct: 61 GRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKP 115
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 80.9 bits (199), Expect = 3e-19
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 103 IMAKPVLADKKLAKVKQYADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYI 162
I+ K + A +D +E+ RGITI A ++ + D PGH D+
Sbjct: 26 ILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT 85
Query: 163 KNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
+ +DGAI+V ++ G PQ+ A++ V + F NK
Sbjct: 86 IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKM 133
>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 91
Score = 75.6 bits (186), Expect = 6e-19
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 19 DKPFY-LPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKIL 77
KP + VE +I G V+ G +E G++ G + + + IE + +
Sbjct: 6 KKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKGPS----GIGGIVRIERNREKV 60
Query: 78 DEAQAGDQLGALVKGMKRDEVNRGLIMAKP 107
+ A AGD++G ++G K +V +G ++
Sbjct: 61 EFAIAGDRIGISIEG-KIGKVKKGDVLEIY 89
>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 118
Score = 76.6 bits (188), Expect = 7e-19
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 21/113 (18%)
Query: 16 RDLDKPFYLPVEHTYSIPG--------RGTVVTGRLERGIVKKGMECEFTGYGRQ----- 62
RD D + V ++ I +G V+ G + +G+ K G E E +
Sbjct: 1 RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNK 60
Query: 63 -----FKTTVTGIEMFHKILDEAQAGDQLGALVK---GMKRDEVNRGLIMAKP 107
T + + + IL +A G +G + + + G ++ P
Sbjct: 61 TFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLP 113
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 74.9 bits (183), Expect = 3e-17
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 21/150 (14%)
Query: 64 KTTVTGIEMFHKILDEAQA--GDQLGALVKGMKRDEVNRGLIMAKPVLADKKLAKVKQYA 121
K+T+ G ++L +++ D L A+ + K+ + V
Sbjct: 22 KSTLIG-----RLLHDSKMIYEDHLEAITRDSKK--------------SGTTGDDVDLAL 62
Query: 122 DIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAA 181
+D E+ +GITI+VA+ ++T R + D PGH Y +NM TG S D AI++V A
Sbjct: 63 LVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDA 122
Query: 182 TDGAMPQTREHLLLAKQIGVTNIVVFINKF 211
G QTR H +A +G+ +IVV INK
Sbjct: 123 RYGVQTQTRRHSYIASLLGIKHIVVAINKM 152
>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit,
domain II {Sulfolobus solfataricus [TaxId: 2287]}
Length = 114
Score = 70.8 bits (173), Expect = 9e-17
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 21/113 (18%)
Query: 16 RDLDKPFYLPVEHTYSI--PG------RGTVVTGRLERGIVKKGMECEFTGYGR------ 61
RDL + + V ++ + PG +G V+ G + +G+ K E + R
Sbjct: 1 RDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGK 60
Query: 62 ----QFKTTVTGIEMFHKILDEAQAGDQLGALVK---GMKRDEVNRGLIMAKP 107
T ++ I + EA+ G + + + + G I+
Sbjct: 61 VSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLA 113
>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 92
Score = 65.4 bits (159), Expect = 7e-15
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 21 PFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEA 80
PV++ G L GIV KG E G + V I F L++A
Sbjct: 6 DLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSG--KSSRVKSIVTFEGELEQA 63
Query: 81 QAGDQLGALVKGMKRDEVNRGLIMAKP 107
G + ++ +++RG ++
Sbjct: 64 GPGQAVTLTMED--EIDISRGDLLVHA 88
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 65.9 bits (160), Expect = 1e-13
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 17/112 (15%)
Query: 115 AKVKQYADIDNAPEEKARGITI--------------NVAHVEYATENRHY--SHTDCPGH 158
AK + D +E+ RGITI +V ++ T+ + + D PGH
Sbjct: 47 AKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGH 106
Query: 159 ADYIKNMITGTSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
D+ + DGA++VV +G QT L A + + V INK
Sbjct: 107 VDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPV-VVINK 157
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 63.3 bits (153), Expect = 6e-13
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 7/99 (7%)
Query: 120 YADIDNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVV 179
+D+ EE+ +G T+ V + TE+R +S D PGH Y+ NMI G SQ D +LV+
Sbjct: 74 SWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVI 133
Query: 180 AATDGAMP-------QTREHLLLAKQIGVTNIVVFINKF 211
+A G QTREH +LA+ G+ ++VV INK
Sbjct: 134 SARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKM 172
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 49.2 bits (116), Expect = 5e-08
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 108 VLADKKLAKVKQYADIDNAPEEKARGITINVAH---------------VEYATENRHYSH 152
+ K ++K+ I E G+ + + R S
Sbjct: 31 IWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF 90
Query: 153 TDCPGHADYIKNMITGTSQMDGAILVVA-ATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
D PGH + M++G + MDGAILVVA PQTREH + IGV N+++ NK
Sbjct: 91 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNK 149
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains
2 and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 128
Score = 41.3 bits (97), Expect = 1e-05
Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 22 FYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMFHKILDEAQ 81
L + + + + G++++G TV ++ + L A
Sbjct: 7 IRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMNDDGET--VGTVESMQDKGENLKSAS 63
Query: 82 AGDQLGALVKG 92
G ++ +K
Sbjct: 64 RGQKVAMAIKD 74
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 41.4 bits (96), Expect = 3e-05
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 110 ADKKLAKVKQYADI-DNAPEEKARGITINVAHVEYATENRHYSHTDCPGHADYIKNMITG 168
A ++ +V++ D PE K T+ D PG+ D++ +
Sbjct: 28 AKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGA 87
Query: 169 TSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
D A++ V+A G T +A+++G+ +VV
Sbjct: 88 LEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKL 129
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 35.8 bits (81), Expect = 0.002
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
Query: 110 ADKKLAKVKQYADIDNAPEEKARGI-TINVAHVEYATENRHYSHTDCPGHADYIKNMITG 168
A ++ + Q+ P + GI + D PGH + G
Sbjct: 31 ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRG 90
Query: 169 TSQMDGAILVVAATDGAMPQTREHLLLAKQIGVTNIVVFINK 210
+ D AIL+V +G PQT+E L + + VV NK
Sbjct: 91 GALADLAILIVDINEGFKPQTQEALNILRMYRT-PFVVAANK 131
>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain
II {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 103
Score = 30.4 bits (68), Expect = 0.050
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 14 PVRDLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTTVTGIEMF 73
R D P V P G V RL RG +K G + + +
Sbjct: 2 TERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQVRLPHLYVPMGKD 61
Query: 74 HKILDEAQAGDQLGALVK 91
++EA+AG + + K
Sbjct: 62 LLEVEEAEAGF-VLGVPK 78
>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain
II {Thermus thermophilus [TaxId: 274]}
Length = 121
Score = 25.8 bits (56), Expect = 2.4
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 17 DLDKPFYLPVEHTYSIPGRGTVVTGRLERGIVKKGMECEFTGYGRQFKTT--VTGIEMFH 74
D + P + P G + R+ G + G T GR+ + +
Sbjct: 22 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHR 81
Query: 75 KILDEAQAGDQLGALVK 91
+ ++E +AGD LGA+V
Sbjct: 82 EEVEELKAGD-LGAVVG 97
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 25.1 bits (54), Expect = 5.5
Identities = 10/83 (12%), Positives = 22/83 (26%), Gaps = 4/83 (4%)
Query: 133 GITINVAHVEYATENRHYSHTDCPGHADYIKNMITGTSQMDGAILVVAATDGA----MPQ 188
GI + +E + D G + G +LV T+ +
Sbjct: 40 GIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN 99
Query: 189 TREHLLLAKQIGVTNIVVFINKF 211
++ V +++
Sbjct: 100 WIRNIEEHASADVEKMILGNKCD 122
>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 404
Score = 24.9 bits (54), Expect = 9.5
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 11/45 (24%)
Query: 158 HADYIKNMITGTSQMDG-AILVVAA----------TDGAMPQTRE 191
+ + K ++ G +++ G + V+ D A P + E
Sbjct: 56 LSGWAKGVVVGRARLGGIPLGVIGVETRTVENLIPADPANPNSAE 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.396
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 781,790
Number of extensions: 35572
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 31
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)