Query psy965
Match_columns 214
No_of_seqs 138 out of 1186
Neff 5.7
Searched_HMMs 46136
Date Sat Aug 17 01:06:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0274 DeoC Deoxyribose-phosp 100.0 3.3E-57 7.1E-62 389.2 18.1 157 47-213 6-164 (228)
2 KOG3981|consensus 100.0 1E-55 2.2E-60 382.4 13.5 205 4-213 13-232 (326)
3 PRK05283 deoxyribose-phosphate 100.0 1.7E-54 3.7E-59 380.5 19.2 162 45-213 6-171 (257)
4 TIGR00126 deoC deoxyribose-pho 100.0 1.2E-52 2.5E-57 360.2 17.3 154 49-213 2-156 (211)
5 PRK00507 deoxyribose-phosphate 100.0 3.2E-50 6.9E-55 347.1 17.6 155 48-213 5-160 (221)
6 cd00959 DeoC 2-deoxyribose-5-p 100.0 3.1E-43 6.7E-48 298.3 17.2 154 49-213 1-155 (203)
7 PF01791 DeoC: DeoC/LacD famil 100.0 4.6E-35 1E-39 252.5 10.8 153 49-212 2-169 (236)
8 TIGR01949 AroFGH_arch predicte 99.9 5.1E-23 1.1E-27 180.1 10.1 148 50-211 20-178 (258)
9 PRK07226 fructose-bisphosphate 99.9 7.5E-23 1.6E-27 180.2 8.9 143 51-210 24-181 (267)
10 cd00958 DhnA Class I fructose- 99.8 2.9E-20 6.3E-25 159.6 9.1 142 52-209 5-163 (235)
11 cd00945 Aldolase_Class_I Class 99.5 4E-12 8.6E-17 104.0 17.5 151 53-212 1-152 (201)
12 cd02803 OYE_like_FMN_family Ol 97.4 0.0014 3E-08 58.8 9.7 83 129-212 145-251 (327)
13 PRK08227 autoinducer 2 aldolas 97.2 0.0019 4.1E-08 57.7 8.2 83 124-209 93-178 (264)
14 PRK09250 fructose-bisphosphate 96.8 0.0038 8.3E-08 57.8 7.3 82 124-209 145-237 (348)
15 PRK06852 aldolase; Validated 96.3 0.011 2.5E-07 53.8 7.0 79 126-209 116-208 (304)
16 PF04481 DUF561: Protein of un 96.0 0.26 5.6E-06 43.4 13.1 127 61-212 23-155 (242)
17 COG1830 FbaB DhnA-type fructos 95.9 0.027 5.9E-07 50.4 7.0 87 115-209 90-186 (265)
18 PRK02227 hypothetical protein; 95.7 0.055 1.2E-06 47.8 7.9 76 128-209 10-87 (238)
19 cd02810 DHOD_DHPD_FMN Dihydroo 95.4 0.41 9E-06 42.1 12.6 97 106-211 97-198 (289)
20 PRK12858 tagatose 1,6-diphosph 95.2 0.2 4.4E-06 46.3 10.3 136 63-209 47-206 (340)
21 PF04476 DUF556: Protein of un 94.6 0.25 5.3E-06 43.7 8.7 76 128-209 10-87 (235)
22 cd04729 NanE N-acetylmannosami 94.2 1.1 2.4E-05 38.1 11.9 127 60-209 22-150 (219)
23 COG1891 Uncharacterized protei 94.2 0.2 4.2E-06 43.1 7.1 78 127-209 9-87 (235)
24 cd07948 DRE_TIM_HCS Saccharomy 93.8 2.7 5.8E-05 37.3 13.9 136 61-211 18-165 (262)
25 cd02930 DCR_FMN 2,4-dienoyl-Co 93.1 0.85 1.8E-05 41.8 9.8 82 130-212 142-247 (353)
26 TIGR00736 nifR3_rel_arch TIM-b 92.5 3.8 8.2E-05 35.9 12.6 149 43-208 7-167 (231)
27 cd02940 DHPD_FMN Dihydropyrimi 92.0 3.3 7.1E-05 37.1 12.0 88 109-207 102-198 (299)
28 cd02801 DUS_like_FMN Dihydrour 91.5 3.7 8E-05 34.5 11.2 95 105-207 52-156 (231)
29 cd04734 OYE_like_3_FMN Old yel 91.4 1.7 3.8E-05 39.8 9.8 82 130-212 146-252 (343)
30 TIGR02660 nifV_homocitr homoci 91.4 11 0.00025 34.7 15.1 131 61-206 19-159 (365)
31 cd07945 DRE_TIM_CMS Leptospira 91.1 2.4 5.1E-05 38.0 10.0 83 130-212 79-172 (280)
32 PRK11858 aksA trans-homoaconit 90.9 6.7 0.00015 36.5 13.2 80 127-206 77-162 (378)
33 cd03174 DRE_TIM_metallolyase D 90.9 9.4 0.0002 32.6 15.1 136 60-207 14-164 (265)
34 cd04738 DHOD_2_like Dihydrooro 90.9 5.2 0.00011 36.4 12.2 69 137-209 159-236 (327)
35 COG0042 tRNA-dihydrouridine sy 90.8 2 4.4E-05 39.2 9.5 93 107-206 66-169 (323)
36 PTZ00314 inosine-5'-monophosph 90.7 1.9 4E-05 41.8 9.6 68 128-209 243-310 (495)
37 PRK07259 dihydroorotate dehydr 90.4 4.8 0.0001 35.8 11.4 102 93-207 79-187 (301)
38 TIGR03128 RuMP_HxlA 3-hexulose 90.3 1.2 2.6E-05 37.1 7.1 69 130-213 68-137 (206)
39 cd04740 DHOD_1B_like Dihydroor 89.4 9.6 0.00021 33.7 12.5 79 124-208 101-185 (296)
40 cd02932 OYE_YqiM_FMN Old yello 89.3 3.2 7E-05 37.6 9.5 83 128-211 157-263 (336)
41 PLN02746 hydroxymethylglutaryl 89.2 3.5 7.6E-05 38.3 9.8 79 127-206 123-214 (347)
42 TIGR00742 yjbN tRNA dihydrouri 89.2 5.5 0.00012 36.4 11.0 87 120-207 63-159 (318)
43 PRK10550 tRNA-dihydrouridine s 89.1 6.2 0.00014 35.9 11.2 95 108-210 63-169 (312)
44 PF00809 Pterin_bind: Pterin b 89.0 1.3 2.8E-05 37.8 6.3 90 116-213 8-103 (210)
45 cd04735 OYE_like_4_FMN Old yel 88.8 3.7 7.9E-05 37.8 9.6 82 130-212 149-258 (353)
46 cd04733 OYE_like_2_FMN Old yel 88.7 3.8 8.3E-05 37.2 9.6 81 130-212 154-259 (338)
47 PRK05692 hydroxymethylglutaryl 88.4 3.2 6.9E-05 37.3 8.7 85 127-212 81-180 (287)
48 PRK10415 tRNA-dihydrouridine s 88.2 4.3 9.3E-05 36.9 9.6 85 119-206 72-166 (321)
49 cd00954 NAL N-Acetylneuraminic 88.1 9.3 0.0002 33.9 11.5 96 108-207 4-101 (288)
50 TIGR01496 DHPS dihydropteroate 87.2 6.6 0.00014 34.7 9.9 85 117-212 13-105 (257)
51 cd00951 KDGDH 5-dehydro-4-deox 87.0 8.8 0.00019 34.2 10.7 99 105-208 1-100 (289)
52 COG0502 BioB Biotin synthase a 87.0 3.8 8.2E-05 38.1 8.5 79 120-208 82-160 (335)
53 cd04747 OYE_like_5_FMN Old yel 86.8 6.4 0.00014 36.6 10.0 82 129-211 148-257 (361)
54 PLN02417 dihydrodipicolinate s 86.8 13 0.00029 32.9 11.7 98 107-208 4-102 (280)
55 PLN02746 hydroxymethylglutaryl 86.7 9.7 0.00021 35.4 11.1 93 110-211 182-275 (347)
56 TIGR01302 IMP_dehydrog inosine 86.6 2.9 6.2E-05 39.9 7.7 70 126-209 224-293 (450)
57 COG5016 Pyruvate/oxaloacetate 86.5 26 0.00056 33.8 13.7 130 62-209 95-231 (472)
58 PRK05848 nicotinate-nucleotide 86.3 3.7 7.9E-05 36.9 7.8 67 128-210 192-258 (273)
59 cd00945 Aldolase_Class_I Class 86.1 12 0.00025 30.1 10.1 76 118-208 6-84 (201)
60 TIGR02090 LEU1_arch isopropylm 85.8 8.1 0.00017 35.8 10.1 85 127-211 73-165 (363)
61 TIGR00737 nifR3_yhdG putative 85.7 10 0.00023 34.1 10.6 82 124-207 74-165 (319)
62 cd07937 DRE_TIM_PC_TC_5S Pyruv 85.5 18 0.0004 32.0 11.9 113 88-210 111-225 (275)
63 cd00381 IMPDH IMPDH: The catal 85.3 7.9 0.00017 35.3 9.7 68 127-208 95-162 (325)
64 cd02911 arch_FMN Archeal FMN-b 85.1 17 0.00037 31.6 11.3 148 43-212 13-175 (233)
65 TIGR00674 dapA dihydrodipicoli 85.0 17 0.00038 32.1 11.5 91 115-208 8-99 (285)
66 cd00408 DHDPS-like Dihydrodipi 84.7 14 0.00031 32.2 10.7 92 115-209 7-99 (281)
67 PLN02274 inosine-5'-monophosph 84.7 4.3 9.4E-05 39.5 8.0 68 128-209 250-317 (505)
68 PRK11815 tRNA-dihydrouridine s 84.6 12 0.00026 34.2 10.5 97 107-208 64-170 (333)
69 PRK05286 dihydroorotate dehydr 84.3 32 0.0007 31.5 13.3 101 107-212 137-248 (344)
70 cd00950 DHDPS Dihydrodipicolin 84.2 20 0.00044 31.4 11.5 92 115-209 10-102 (284)
71 cd03174 DRE_TIM_metallolyase D 84.0 19 0.00042 30.7 11.1 83 121-211 142-224 (265)
72 cd07941 DRE_TIM_LeuA3 Desulfob 84.0 14 0.0003 32.7 10.4 88 115-210 140-228 (273)
73 TIGR00284 dihydropteroate synt 83.8 28 0.0006 34.0 13.1 144 43-212 92-238 (499)
74 PRK09389 (R)-citramalate synth 83.7 20 0.00044 34.7 12.1 80 128-207 76-161 (488)
75 PRK05481 lipoyl synthase; Prov 83.4 9.8 0.00021 34.1 9.3 90 111-207 67-160 (289)
76 cd02933 OYE_like_FMN Old yello 83.0 9.6 0.00021 35.0 9.2 81 130-211 157-263 (338)
77 PRK01130 N-acetylmannosamine-6 83.0 5.7 0.00012 33.6 7.3 122 62-209 20-146 (221)
78 PRK05692 hydroxymethylglutaryl 82.8 19 0.0004 32.4 10.8 88 116-211 145-233 (287)
79 cd07947 DRE_TIM_Re_CS Clostrid 82.8 15 0.00033 32.9 10.2 85 128-212 77-175 (279)
80 PRK12928 lipoyl synthase; Prov 82.7 7.3 0.00016 35.1 8.2 68 110-179 73-144 (290)
81 TIGR00683 nanA N-acetylneurami 82.5 24 0.00052 31.5 11.4 97 108-208 4-102 (290)
82 cd07938 DRE_TIM_HMGL 3-hydroxy 82.5 14 0.0003 32.9 9.8 85 128-212 76-174 (274)
83 PF01207 Dus: Dihydrouridine s 82.5 14 0.0003 33.4 9.9 101 98-206 44-155 (309)
84 PRK08318 dihydropyrimidine deh 82.4 20 0.00044 33.5 11.3 77 125-207 113-198 (420)
85 COG0119 LeuA Isopropylmalate/h 82.0 14 0.00031 35.0 10.2 82 121-209 142-223 (409)
86 cd00377 ICL_PEPM Members of th 81.6 35 0.00075 29.8 11.8 109 93-206 57-177 (243)
87 PRK13523 NADPH dehydrogenase N 81.5 12 0.00027 34.3 9.4 82 130-212 147-250 (337)
88 TIGR01037 pyrD_sub1_fam dihydr 81.3 34 0.00074 30.3 11.9 65 138-208 118-188 (300)
89 cd04739 DHOD_like Dihydroorota 81.1 21 0.00045 32.5 10.6 79 125-209 112-195 (325)
90 TIGR02313 HpaI-NOT-DapA 2,4-di 81.0 30 0.00065 30.9 11.5 96 108-207 4-100 (294)
91 cd07943 DRE_TIM_HOA 4-hydroxy- 80.9 14 0.00029 32.4 9.1 71 128-206 88-158 (263)
92 cd07939 DRE_TIM_NifV Streptomy 80.6 31 0.00067 30.1 11.2 88 115-211 128-216 (259)
93 cd07937 DRE_TIM_PC_TC_5S Pyruv 80.6 38 0.00083 30.0 11.9 80 117-206 83-166 (275)
94 cd07939 DRE_TIM_NifV Streptomy 80.5 38 0.00083 29.5 15.1 137 60-211 15-163 (259)
95 cd03316 MR_like Mandelate race 80.5 24 0.00051 31.9 10.8 85 123-209 139-223 (357)
96 PRK05437 isopentenyl pyrophosp 80.5 28 0.0006 32.2 11.3 110 90-210 104-218 (352)
97 cd00956 Transaldolase_FSA Tran 80.3 18 0.0004 31.0 9.5 74 128-209 112-185 (211)
98 cd07938 DRE_TIM_HMGL 3-hydroxy 80.1 22 0.00048 31.6 10.2 89 115-211 138-227 (274)
99 TIGR03217 4OH_2_O_val_ald 4-hy 80.0 29 0.00062 31.9 11.2 83 121-210 139-221 (333)
100 PRK11613 folP dihydropteroate 79.9 16 0.00035 33.0 9.3 89 116-212 27-120 (282)
101 PRK07565 dihydroorotate dehydr 79.5 36 0.00077 30.9 11.6 79 124-208 113-196 (334)
102 PRK04147 N-acetylneuraminate l 79.4 36 0.00077 30.2 11.4 101 107-211 6-108 (293)
103 PRK13753 dihydropteroate synth 79.3 15 0.00033 33.2 9.0 89 116-213 14-107 (279)
104 PRK12581 oxaloacetate decarbox 79.2 35 0.00076 33.1 11.9 129 64-211 104-240 (468)
105 cd04741 DHOD_1A_like Dihydroor 79.0 46 0.00099 29.8 12.0 79 125-207 103-191 (294)
106 cd00952 CHBPH_aldolase Trans-o 78.9 33 0.00071 30.9 11.1 85 120-207 24-108 (309)
107 cd00739 DHPS DHPS subgroup of 78.7 21 0.00047 31.5 9.6 87 116-213 13-107 (257)
108 cd02931 ER_like_FMN Enoate red 78.6 22 0.00047 33.1 10.1 82 130-212 155-275 (382)
109 TIGR00542 hxl6Piso_put hexulos 78.6 44 0.00094 29.0 12.7 140 58-207 12-178 (279)
110 TIGR02151 IPP_isom_2 isopenten 78.4 31 0.00067 31.5 10.9 76 127-211 132-212 (333)
111 COG0329 DapA Dihydrodipicolina 78.1 38 0.00083 30.5 11.2 98 107-208 7-105 (299)
112 PRK12330 oxaloacetate decarbox 77.8 12 0.00027 36.4 8.4 136 64-211 96-234 (499)
113 PRK03170 dihydrodipicolinate s 77.6 44 0.00095 29.5 11.4 98 108-209 5-103 (292)
114 cd02809 alpha_hydroxyacid_oxid 77.4 15 0.00032 32.9 8.4 68 129-209 133-200 (299)
115 TIGR01182 eda Entner-Doudoroff 77.2 25 0.00054 30.3 9.3 110 62-208 17-127 (204)
116 cd07940 DRE_TIM_IPMS 2-isoprop 76.9 31 0.00068 30.2 10.2 91 115-211 132-223 (268)
117 cd00405 PRAI Phosphoribosylant 76.9 6.7 0.00015 32.8 5.7 71 127-209 8-80 (203)
118 cd07945 DRE_TIM_CMS Leptospira 76.3 49 0.0011 29.6 11.3 97 107-211 128-225 (280)
119 PRK06843 inosine 5-monophospha 75.8 12 0.00026 35.6 7.6 68 127-208 154-221 (404)
120 PRK08255 salicylyl-CoA 5-hydro 75.7 22 0.00049 36.0 10.0 81 130-211 556-660 (765)
121 PRK09140 2-dehydro-3-deoxy-6-p 75.4 15 0.00032 31.5 7.4 71 123-209 20-90 (206)
122 TIGR00433 bioB biotin syntheta 75.3 23 0.0005 30.9 8.9 75 123-206 63-137 (296)
123 cd00452 KDPG_aldolase KDPG and 75.2 8 0.00017 32.2 5.7 110 62-208 13-123 (190)
124 cd00408 DHDPS-like Dihydrodipi 74.4 34 0.00073 29.9 9.7 92 106-211 65-161 (281)
125 PRK07107 inosine 5-monophospha 74.4 17 0.00036 35.5 8.3 71 128-211 244-314 (502)
126 PRK05567 inosine 5'-monophosph 74.4 14 0.00031 35.5 7.9 68 128-209 230-297 (486)
127 COG0800 Eda 2-keto-3-deoxy-6-p 74.2 29 0.00064 30.3 9.0 70 123-209 23-92 (211)
128 cd07940 DRE_TIM_IPMS 2-isoprop 74.0 35 0.00076 29.9 9.7 79 128-206 72-160 (268)
129 PRK13585 1-(5-phosphoribosyl)- 73.9 16 0.00034 31.2 7.3 71 130-211 37-107 (241)
130 PRK08508 biotin synthase; Prov 73.8 29 0.00064 30.7 9.2 77 122-206 40-116 (279)
131 TIGR00510 lipA lipoate synthas 73.7 22 0.00048 32.3 8.5 89 110-205 76-169 (302)
132 PRK14042 pyruvate carboxylase 73.0 84 0.0018 31.5 13.0 132 63-211 94-231 (596)
133 PF00701 DHDPS: Dihydrodipicol 72.8 55 0.0012 28.8 10.7 85 120-207 17-101 (289)
134 PRK05458 guanosine 5'-monophos 72.5 19 0.00042 33.2 7.9 79 110-209 87-168 (326)
135 PRK15452 putative protease; Pr 72.4 16 0.00035 35.0 7.7 76 128-206 13-93 (443)
136 PRK06552 keto-hydroxyglutarate 72.0 41 0.00089 29.0 9.4 74 123-210 23-96 (213)
137 PRK03620 5-dehydro-4-deoxygluc 71.4 60 0.0013 29.1 10.7 98 107-209 10-108 (303)
138 PF00682 HMGL-like: HMGL-like 71.3 26 0.00057 29.6 8.1 76 131-206 73-154 (237)
139 PRK06106 nicotinate-nucleotide 71.2 28 0.00061 31.5 8.5 64 128-210 204-267 (281)
140 PRK07114 keto-hydroxyglutarate 71.1 38 0.00081 29.6 9.0 74 123-209 25-98 (222)
141 cd04722 TIM_phosphate_binding 70.9 34 0.00075 26.8 8.2 70 131-212 77-146 (200)
142 PLN02321 2-isopropylmalate syn 70.6 52 0.0011 33.2 11.0 91 115-210 229-320 (632)
143 PRK12331 oxaloacetate decarbox 70.5 21 0.00046 34.3 8.0 81 122-211 151-231 (448)
144 COG0119 LeuA Isopropylmalate/h 70.4 31 0.00067 32.8 9.0 77 130-207 81-164 (409)
145 TIGR03217 4OH_2_O_val_ald 4-hy 70.2 34 0.00074 31.4 9.0 80 121-210 20-108 (333)
146 cd03315 MLE_like Muconate lact 70.2 72 0.0016 27.6 12.2 92 106-210 73-164 (265)
147 TIGR01949 AroFGH_arch predicte 70.1 74 0.0016 27.7 10.8 75 120-209 151-227 (258)
148 PRK08444 hypothetical protein; 69.5 39 0.00084 31.4 9.3 54 122-178 80-133 (353)
149 PRK06801 hypothetical protein; 69.1 66 0.0014 29.1 10.5 105 91-211 60-178 (286)
150 PRK05718 keto-hydroxyglutarate 69.1 47 0.001 28.6 9.2 69 124-209 26-94 (212)
151 cd00950 DHDPS Dihydrodipicolin 69.0 43 0.00093 29.3 9.1 83 120-211 77-164 (284)
152 cd00423 Pterin_binding Pterin 68.9 46 0.001 29.1 9.3 82 123-213 22-107 (258)
153 PRK08385 nicotinate-nucleotide 68.8 24 0.00052 31.9 7.5 126 57-210 123-260 (278)
154 TIGR01182 eda Entner-Doudoroff 68.3 56 0.0012 28.1 9.4 71 123-210 18-88 (204)
155 PRK07807 inosine 5-monophospha 68.3 25 0.00054 34.1 8.0 66 128-207 229-294 (479)
156 PRK14041 oxaloacetate decarbox 68.1 36 0.00077 33.0 9.0 133 63-211 92-230 (467)
157 PF00682 HMGL-like: HMGL-like 68.1 74 0.0016 26.9 10.9 81 118-209 7-87 (237)
158 PRK08195 4-hyroxy-2-oxovalerat 67.9 1E+02 0.0022 28.4 12.1 84 120-210 139-222 (337)
159 COG1830 FbaB DhnA-type fructos 67.7 24 0.00052 31.8 7.2 137 49-206 81-234 (265)
160 TIGR03249 KdgD 5-dehydro-4-deo 67.7 90 0.0019 27.8 11.3 97 107-208 8-105 (296)
161 PRK13209 L-xylulose 5-phosphat 67.6 81 0.0018 27.2 11.5 108 91-206 56-182 (283)
162 PRK15108 biotin synthase; Prov 67.6 52 0.0011 30.2 9.7 75 122-206 76-150 (345)
163 PLN03228 methylthioalkylmalate 67.4 76 0.0016 31.1 11.1 91 115-210 228-319 (503)
164 PRK09016 quinolinate phosphori 67.3 26 0.00056 32.0 7.4 63 128-210 218-281 (296)
165 PRK06256 biotin synthase; Vali 67.3 40 0.00087 30.3 8.8 76 122-206 91-166 (336)
166 PRK06245 cofG FO synthase subu 67.2 34 0.00074 30.8 8.3 25 121-145 40-64 (336)
167 PRK07998 gatY putative fructos 66.9 87 0.0019 28.4 10.7 106 91-212 60-176 (283)
168 PF01261 AP_endonuc_2: Xylose 66.8 8.4 0.00018 30.9 3.9 109 93-204 28-157 (213)
169 PF04476 DUF556: Protein of un 66.6 47 0.001 29.5 8.7 108 88-206 36-148 (235)
170 cd00740 MeTr MeTr subgroup of 66.3 39 0.00084 29.8 8.2 78 124-212 25-102 (252)
171 PRK07896 nicotinate-nucleotide 66.1 43 0.00093 30.4 8.6 67 128-210 209-275 (289)
172 PRK12344 putative alpha-isopro 65.5 50 0.0011 32.3 9.5 80 122-210 155-234 (524)
173 cd08205 RuBisCO_IV_RLP Ribulos 65.5 56 0.0012 30.5 9.5 110 92-208 116-229 (367)
174 PRK02506 dihydroorotate dehydr 65.1 37 0.0008 30.7 8.1 93 108-210 94-192 (310)
175 PRK06015 keto-hydroxyglutarate 65.0 67 0.0014 27.6 9.2 71 123-210 14-84 (201)
176 cd00502 DHQase_I Type I 3-dehy 65.0 87 0.0019 26.6 10.1 85 110-206 2-93 (225)
177 PRK10605 N-ethylmaleimide redu 64.7 57 0.0012 30.2 9.4 81 129-211 163-271 (362)
178 PF01261 AP_endonuc_2: Xylose 64.6 14 0.00031 29.6 4.9 75 132-211 2-93 (213)
179 PRK06852 aldolase; Validated 64.6 85 0.0018 28.8 10.3 93 105-207 165-263 (304)
180 cd00953 KDG_aldolase KDG (2-ke 64.3 1E+02 0.0022 27.2 11.4 87 115-207 10-96 (279)
181 PRK09140 2-dehydro-3-deoxy-6-p 64.0 59 0.0013 27.7 8.7 110 61-208 18-130 (206)
182 PLN02520 bifunctional 3-dehydr 63.9 57 0.0012 31.8 9.6 75 124-210 96-173 (529)
183 COG0329 DapA Dihydrodipicolina 63.9 1.1E+02 0.0024 27.5 11.1 93 105-211 71-168 (299)
184 PRK07428 nicotinate-nucleotide 63.8 26 0.00057 31.7 6.8 68 128-212 206-274 (288)
185 COG1902 NemA NADH:flavin oxido 63.7 66 0.0014 30.1 9.6 82 130-211 154-260 (363)
186 cd04726 KGPDC_HPS 3-Keto-L-gul 63.7 31 0.00068 28.3 6.8 68 129-211 68-135 (202)
187 TIGR03249 KdgD 5-dehydro-4-deo 63.4 1E+02 0.0023 27.3 10.6 93 106-211 73-166 (296)
188 cd07941 DRE_TIM_LeuA3 Desulfob 63.2 1.1E+02 0.0023 27.0 15.4 148 61-212 16-176 (273)
189 PRK09282 pyruvate carboxylase 63.1 36 0.00079 33.8 8.2 82 121-211 150-231 (592)
190 TIGR00674 dapA dihydrodipicoli 62.8 61 0.0013 28.6 8.9 92 107-211 67-162 (285)
191 PRK00278 trpC indole-3-glycero 62.8 35 0.00077 30.1 7.4 62 130-208 125-186 (260)
192 TIGR03151 enACPred_II putative 62.6 89 0.0019 28.2 10.1 74 128-213 119-194 (307)
193 PRK09997 hydroxypyruvate isome 62.5 1E+02 0.0022 26.5 12.6 107 91-207 39-174 (258)
194 PLN02495 oxidoreductase, actin 62.2 1.4E+02 0.0031 28.1 12.4 89 108-207 115-212 (385)
195 PRK06096 molybdenum transport 62.1 33 0.00072 31.0 7.2 66 127-209 198-264 (284)
196 TIGR01036 pyrD_sub2 dihydrooro 62.0 1.3E+02 0.0028 27.6 11.2 66 138-207 166-242 (335)
197 TIGR00078 nadC nicotinate-nucl 61.5 53 0.0012 29.2 8.3 124 55-209 115-250 (265)
198 PRK01060 endonuclease IV; Prov 61.2 42 0.0009 29.0 7.5 80 130-212 17-112 (281)
199 PRK05742 nicotinate-nucleotide 61.1 56 0.0012 29.4 8.4 64 128-210 199-262 (277)
200 PRK08072 nicotinate-nucleotide 60.8 59 0.0013 29.3 8.5 65 127-210 197-261 (277)
201 TIGR02313 HpaI-NOT-DapA 2,4-di 60.7 1.2E+02 0.0027 27.0 10.9 94 106-211 68-166 (294)
202 PRK02227 hypothetical protein; 60.5 68 0.0015 28.5 8.6 106 88-206 36-148 (238)
203 PF01487 DHquinase_I: Type I 3 60.0 1.1E+02 0.0023 25.9 10.0 80 122-207 7-93 (224)
204 cd07944 DRE_TIM_HOA_like 4-hyd 59.7 1.2E+02 0.0027 26.7 10.9 83 122-211 135-217 (266)
205 PRK08227 autoinducer 2 aldolas 59.5 85 0.0019 28.1 9.2 132 54-207 83-224 (264)
206 PRK09856 fructoselysine 3-epim 59.5 91 0.002 26.7 9.3 106 93-206 48-176 (275)
207 TIGR01303 IMP_DH_rel_1 IMP deh 59.0 47 0.001 32.1 8.0 65 129-207 228-292 (475)
208 PLN02363 phosphoribosylanthran 58.6 35 0.00076 30.3 6.6 78 108-207 49-127 (256)
209 cd01572 QPRTase Quinolinate ph 58.3 65 0.0014 28.7 8.3 64 128-210 192-255 (268)
210 cd02811 IDI-2_FMN Isopentenyl- 58.1 1.5E+02 0.0032 27.0 12.2 75 127-210 131-210 (326)
211 PRK02412 aroD 3-dehydroquinate 58.0 95 0.0021 27.2 9.2 92 107-210 74-173 (253)
212 PLN02389 biotin synthase 58.0 89 0.0019 29.3 9.5 75 122-206 116-192 (379)
213 PRK12344 putative alpha-isopro 58.0 62 0.0013 31.7 8.7 76 131-207 91-176 (524)
214 smart00518 AP2Ec AP endonuclea 57.9 51 0.0011 28.3 7.4 82 129-212 14-107 (273)
215 PRK00915 2-isopropylmalate syn 57.7 88 0.0019 30.4 9.7 79 129-207 79-167 (513)
216 cd02929 TMADH_HD_FMN Trimethyl 57.5 91 0.002 28.9 9.4 81 130-212 155-261 (370)
217 cd00954 NAL N-Acetylneuraminic 57.5 1.2E+02 0.0026 26.8 9.9 84 120-211 78-166 (288)
218 KOG2335|consensus 57.3 82 0.0018 29.7 8.9 83 119-206 80-172 (358)
219 TIGR01334 modD putative molybd 57.0 80 0.0017 28.5 8.6 68 127-210 197-264 (277)
220 TIGR02090 LEU1_arch isopropylm 57.0 1.2E+02 0.0026 28.0 10.1 82 120-210 136-217 (363)
221 PF00478 IMPDH: IMP dehydrogen 56.8 71 0.0015 29.9 8.5 85 106-211 95-179 (352)
222 PRK13352 thiamine biosynthesis 56.6 21 0.00045 34.3 5.0 99 105-211 58-165 (431)
223 PTZ00314 inosine-5'-monophosph 56.6 61 0.0013 31.5 8.3 112 90-212 239-376 (495)
224 TIGR00977 LeuA_rel 2-isopropyl 56.4 99 0.0022 30.3 9.8 86 116-209 144-230 (526)
225 TIGR03234 OH-pyruv-isom hydrox 56.1 55 0.0012 27.8 7.3 76 122-212 14-107 (254)
226 PRK06543 nicotinate-nucleotide 55.9 86 0.0019 28.4 8.7 64 128-210 203-266 (281)
227 PRK05926 hypothetical protein; 55.7 28 0.0006 32.5 5.7 78 122-207 99-184 (370)
228 PRK07094 biotin synthase; Prov 55.2 1.2E+02 0.0027 26.9 9.6 74 123-207 71-144 (323)
229 TIGR00977 LeuA_rel 2-isopropyl 55.0 88 0.0019 30.7 9.2 78 130-207 86-172 (526)
230 PRK12858 tagatose 1,6-diphosph 55.0 1.8E+02 0.0039 27.0 12.2 96 105-206 154-271 (340)
231 PRK08195 4-hyroxy-2-oxovalerat 54.8 1E+02 0.0022 28.4 9.1 92 106-212 76-169 (337)
232 PF01884 PcrB: PcrB family; I 54.6 33 0.00071 30.2 5.6 52 153-212 163-214 (230)
233 PRK09310 aroDE bifunctional 3- 54.4 99 0.0022 29.7 9.4 86 107-209 51-136 (477)
234 PRK00915 2-isopropylmalate syn 54.3 1.3E+02 0.0028 29.3 10.2 91 115-210 138-229 (513)
235 TIGR01305 GMP_reduct_1 guanosi 54.2 66 0.0014 30.1 7.8 68 128-209 109-178 (343)
236 PRK07028 bifunctional hexulose 53.5 46 0.001 31.2 6.9 69 130-212 73-141 (430)
237 cd01571 NAPRTase_B Nicotinate 53.1 74 0.0016 28.8 7.9 75 128-210 198-274 (302)
238 cd03319 L-Ala-DL-Glu_epimerase 52.8 1.5E+02 0.0033 26.2 9.9 78 123-209 134-211 (316)
239 PRK06978 nicotinate-nucleotide 52.7 88 0.0019 28.6 8.2 63 128-210 215-278 (294)
240 TIGR01859 fruc_bis_ald_ fructo 52.5 1.7E+02 0.0038 26.2 10.5 103 90-211 58-175 (282)
241 TIGR02814 pfaD_fam PfaD family 52.4 78 0.0017 30.6 8.2 76 128-213 171-257 (444)
242 PF01081 Aldolase: KDPG and KH 52.1 67 0.0014 27.5 7.0 66 127-209 22-87 (196)
243 TIGR01302 IMP_dehydrog inosine 51.7 75 0.0016 30.3 8.0 78 129-212 277-359 (450)
244 TIGR03550 F420_cofG 7,8-dideme 51.7 80 0.0017 28.5 7.9 24 122-145 35-58 (322)
245 cd07943 DRE_TIM_HOA 4-hydroxy- 51.5 1.6E+02 0.0036 25.5 10.7 83 120-210 136-218 (263)
246 PRK03620 5-dehydro-4-deoxygluc 51.5 1.8E+02 0.0039 26.0 10.9 94 105-211 74-168 (303)
247 PF01487 DHquinase_I: Type I 3 51.4 84 0.0018 26.6 7.6 74 123-208 73-149 (224)
248 cd04732 HisA HisA. Phosphorib 51.2 75 0.0016 26.7 7.3 71 130-211 34-104 (234)
249 cd01568 QPRTase_NadC Quinolina 51.1 1.1E+02 0.0024 27.2 8.5 66 128-210 191-256 (269)
250 PRK07535 methyltetrahydrofolat 50.7 75 0.0016 28.2 7.4 75 125-212 25-101 (261)
251 PRK09250 fructose-bisphosphate 50.7 2.2E+02 0.0047 26.7 10.6 99 105-206 190-315 (348)
252 PLN02716 nicotinate-nucleotide 50.6 75 0.0016 29.2 7.5 73 128-210 213-291 (308)
253 PRK04147 N-acetylneuraminate l 50.6 1.8E+02 0.0039 25.7 10.2 92 106-211 72-168 (293)
254 TIGR01108 oadA oxaloacetate de 50.4 1.6E+02 0.0035 29.3 10.3 81 122-211 146-226 (582)
255 PLN02623 pyruvate kinase 50.4 2.2E+02 0.0049 28.5 11.2 132 60-209 274-417 (581)
256 PRK06559 nicotinate-nucleotide 50.4 1E+02 0.0022 28.1 8.3 63 128-210 207-270 (290)
257 PLN02428 lipoic acid synthase 50.4 1.6E+02 0.0034 27.6 9.7 75 126-206 134-209 (349)
258 cd00951 KDGDH 5-dehydro-4-deox 50.1 1.8E+02 0.004 25.7 10.6 93 106-211 68-161 (289)
259 TIGR01856 hisJ_fam histidinol 50.0 1.7E+02 0.0037 25.3 9.4 85 118-207 11-107 (253)
260 cd08210 RLP_RrRLP Ribulose bis 50.0 1.5E+02 0.0032 27.7 9.5 109 90-207 110-223 (364)
261 TIGR00875 fsa_talC_mipB fructo 49.9 1.7E+02 0.0036 25.3 9.2 162 10-207 18-183 (213)
262 PRK07360 FO synthase subunit 2 49.8 71 0.0015 29.5 7.4 79 121-207 90-178 (371)
263 PF00224 PK: Pyruvate kinase, 49.7 1E+02 0.0022 28.4 8.3 133 60-209 172-315 (348)
264 cd03321 mandelate_racemase Man 49.7 1.7E+02 0.0037 26.6 9.8 81 123-210 141-221 (355)
265 cd00331 IGPS Indole-3-glycerol 49.6 82 0.0018 26.4 7.2 66 128-207 34-99 (217)
266 PRK13210 putative L-xylulose 5 49.4 1.7E+02 0.0036 25.0 10.3 108 93-207 53-178 (284)
267 cd00958 DhnA Class I fructose- 49.4 1.6E+02 0.0035 24.8 11.0 93 62-166 140-233 (235)
268 PRK08445 hypothetical protein; 49.4 75 0.0016 29.3 7.4 76 123-205 74-157 (348)
269 cd03328 MR_like_3 Mandelate ra 49.0 2.1E+02 0.0046 26.1 12.0 100 99-209 117-216 (352)
270 COG0826 Collagenase and relate 48.9 62 0.0013 30.1 6.8 77 128-206 16-96 (347)
271 PRK12999 pyruvate carboxylase; 48.8 88 0.0019 33.7 8.7 80 122-210 688-767 (1146)
272 PRK12331 oxaloacetate decarbox 48.4 2.6E+02 0.0056 26.9 12.8 83 120-211 91-178 (448)
273 TIGR03700 mena_SCO4494 putativ 48.3 84 0.0018 28.8 7.5 54 122-178 79-132 (351)
274 PF02142 MGS: MGS-like domain 48.2 14 0.00031 27.2 2.1 36 130-170 51-86 (95)
275 cd00452 KDPG_aldolase KDPG and 48.0 1.1E+02 0.0023 25.3 7.6 65 128-209 19-83 (190)
276 PRK09240 thiH thiamine biosynt 47.8 1.5E+02 0.0033 27.4 9.3 75 121-207 103-178 (371)
277 PRK00208 thiG thiazole synthas 47.6 54 0.0012 29.4 5.9 168 18-211 24-206 (250)
278 PRK13958 N-(5'-phosphoribosyl) 47.5 69 0.0015 27.3 6.4 71 126-207 9-80 (207)
279 PRK06843 inosine 5-monophospha 47.4 1.1E+02 0.0023 29.3 8.2 78 129-212 206-288 (404)
280 PRK13111 trpA tryptophan synth 47.2 1.8E+02 0.0039 25.8 9.2 24 183-207 124-147 (258)
281 PRK10415 tRNA-dihydrouridine s 47.1 2.2E+02 0.0048 25.8 11.3 107 91-212 118-227 (321)
282 PRK00507 deoxyribose-phosphate 46.9 1.3E+02 0.0028 26.1 8.1 85 117-213 128-212 (221)
283 PRK12330 oxaloacetate decarbox 46.7 2.9E+02 0.0064 27.1 13.0 108 93-211 66-179 (499)
284 cd06556 ICL_KPHMT Members of t 46.7 73 0.0016 28.0 6.6 49 158-207 59-107 (240)
285 PRK01130 N-acetylmannosamine-6 46.5 74 0.0016 26.8 6.5 73 129-212 130-205 (221)
286 PRK00043 thiE thiamine-phospha 46.5 1.2E+02 0.0025 24.9 7.6 64 129-209 25-88 (212)
287 cd00019 AP2Ec AP endonuclease 46.3 1E+02 0.0022 26.6 7.5 79 131-212 16-108 (279)
288 TIGR01235 pyruv_carbox pyruvat 46.3 2E+02 0.0044 31.0 10.9 81 121-210 685-765 (1143)
289 PF07071 DUF1341: Protein of u 45.9 24 0.00051 30.9 3.3 66 131-206 141-206 (218)
290 cd00564 TMP_TenI Thiamine mono 45.7 1.5E+02 0.0033 23.5 8.1 65 129-210 16-80 (196)
291 PRK07428 nicotinate-nucleotide 45.6 48 0.0011 30.0 5.4 84 105-207 130-221 (288)
292 PF01729 QRPTase_C: Quinolinat 45.5 81 0.0018 26.2 6.4 65 128-209 90-155 (169)
293 PRK07028 bifunctional hexulose 45.4 1.1E+02 0.0024 28.7 8.0 75 122-208 13-87 (430)
294 TIGR02708 L_lactate_ox L-lacta 45.3 1.2E+02 0.0025 28.6 8.0 71 128-206 239-309 (367)
295 cd03329 MR_like_4 Mandelate ra 44.9 2.5E+02 0.0054 25.7 12.7 103 99-209 117-223 (368)
296 TIGR00973 leuA_bact 2-isopropy 44.9 1.4E+02 0.003 29.0 8.7 91 115-210 135-226 (494)
297 TIGR02660 nifV_homocitr homoci 44.7 1.1E+02 0.0025 28.1 7.9 87 115-210 131-218 (365)
298 PLN02535 glycolate oxidase 44.6 96 0.0021 29.1 7.4 74 129-211 235-309 (364)
299 TIGR00253 RNA_bind_YhbY putati 44.6 59 0.0013 24.7 5.0 69 132-207 6-74 (95)
300 cd01974 Nitrogenase_MoFe_beta 44.1 2.1E+02 0.0046 26.9 9.7 124 60-212 213-336 (435)
301 TIGR00262 trpA tryptophan synt 44.0 2.3E+02 0.0049 25.0 9.9 12 157-168 72-83 (256)
302 TIGR00190 thiC thiamine biosyn 43.9 1E+02 0.0023 29.6 7.5 99 105-211 58-162 (423)
303 PRK09389 (R)-citramalate synth 43.8 2.1E+02 0.0046 27.7 9.8 177 16-210 18-219 (488)
304 PF03932 CutC: CutC family; I 43.6 2.1E+02 0.0046 24.6 9.6 74 128-206 10-89 (201)
305 cd00502 DHQase_I Type I 3-dehy 43.3 2E+02 0.0044 24.3 9.8 75 122-209 73-150 (225)
306 PRK09427 bifunctional indole-3 43.2 2.3E+02 0.005 27.4 9.9 133 43-207 197-334 (454)
307 PRK09613 thiH thiamine biosynt 43.1 2.4E+02 0.0051 27.4 10.0 88 111-206 98-194 (469)
308 TIGR00973 leuA_bact 2-isopropy 43.1 2E+02 0.0044 27.9 9.6 79 129-207 76-164 (494)
309 cd03332 LMO_FMN L-Lactate 2-mo 43.1 1.3E+02 0.0029 28.4 8.1 74 128-209 264-337 (383)
310 TIGR00423 radical SAM domain p 43.0 1.9E+02 0.0041 25.8 8.9 78 121-206 35-121 (309)
311 PRK02083 imidazole glycerol ph 43.0 1.2E+02 0.0026 26.2 7.4 71 131-212 36-106 (253)
312 TIGR01305 GMP_reduct_1 guanosi 42.9 1.2E+02 0.0026 28.4 7.6 73 129-207 162-239 (343)
313 TIGR03234 OH-pyruv-isom hydrox 42.6 2.1E+02 0.0045 24.2 12.4 107 91-207 38-173 (254)
314 cd03326 MR_like_1 Mandelate ra 42.5 2.9E+02 0.0062 25.8 12.4 95 107-209 145-239 (385)
315 PLN03228 methylthioalkylmalate 42.4 1.5E+02 0.0033 29.0 8.6 78 129-206 168-256 (503)
316 cd01573 modD_like ModD; Quinol 42.3 75 0.0016 28.4 6.1 65 128-209 193-258 (272)
317 cd04728 ThiG Thiazole synthase 41.9 1.1E+02 0.0025 27.3 7.1 165 18-211 23-206 (248)
318 PF02679 ComA: (2R)-phospho-3- 41.8 1E+02 0.0022 27.5 6.7 136 59-207 19-165 (244)
319 PRK06552 keto-hydroxyglutarate 41.7 2.3E+02 0.0049 24.4 10.6 94 88-211 92-185 (213)
320 PRK05567 inosine 5'-monophosph 41.6 1.5E+02 0.0032 28.6 8.3 78 128-211 280-362 (486)
321 KOG2367|consensus 41.5 1.4E+02 0.0031 29.4 8.1 84 120-209 199-283 (560)
322 TIGR03551 F420_cofH 7,8-dideme 41.5 2.2E+02 0.0048 25.8 9.2 78 122-207 70-156 (343)
323 TIGR03849 arch_ComA phosphosul 41.4 1.1E+02 0.0025 27.0 7.0 138 58-208 5-153 (237)
324 PRK09283 delta-aminolevulinic 40.9 3E+02 0.0066 25.6 10.2 127 64-209 14-165 (323)
325 cd01972 Nitrogenase_VnfE_like 40.9 1.2E+02 0.0026 28.4 7.5 106 88-210 219-325 (426)
326 TIGR01306 GMP_reduct_2 guanosi 40.7 2E+02 0.0044 26.5 8.7 69 128-210 96-166 (321)
327 PF00701 DHDPS: Dihydrodipicol 40.6 2.4E+02 0.0052 24.7 9.0 95 105-211 68-165 (289)
328 PRK02412 aroD 3-dehydroquinate 40.5 2.5E+02 0.0054 24.5 11.9 90 107-206 15-113 (253)
329 PRK09875 putative hydrolase; P 40.4 67 0.0015 29.0 5.5 54 154-213 31-84 (292)
330 PF04131 NanE: Putative N-acet 40.3 82 0.0018 27.1 5.7 120 61-210 51-174 (192)
331 cd02811 IDI-2_FMN Isopentenyl- 40.3 2.9E+02 0.0062 25.1 10.3 90 106-211 177-286 (326)
332 TIGR02351 thiH thiazole biosyn 39.9 2.4E+02 0.0052 26.0 9.2 73 122-206 103-176 (366)
333 PRK13957 indole-3-glycerol-pho 39.8 77 0.0017 28.2 5.7 61 129-206 115-175 (247)
334 TIGR03581 EF_0839 conserved hy 39.0 47 0.001 29.4 4.1 65 132-206 142-206 (236)
335 PLN02493 probable peroxisomal 39.0 1.8E+02 0.0038 27.4 8.2 73 128-209 235-308 (367)
336 PF01791 DeoC: DeoC/LacD famil 38.9 81 0.0018 26.9 5.6 101 105-212 123-231 (236)
337 PRK10343 RNA-binding protein Y 38.8 87 0.0019 24.0 5.1 69 132-207 8-76 (97)
338 cd04727 pdxS PdxS is a subunit 38.5 84 0.0018 28.7 5.8 86 90-209 53-139 (283)
339 cd01976 Nitrogenase_MoFe_alpha 38.1 1.8E+02 0.0039 27.4 8.2 129 58-212 205-333 (421)
340 COG0157 NadC Nicotinate-nucleo 38.0 1.9E+02 0.0041 26.4 7.9 65 128-209 198-262 (280)
341 cd04724 Tryptophan_synthase_al 37.9 2.3E+02 0.005 24.5 8.4 12 195-206 97-108 (242)
342 cd00952 CHBPH_aldolase Trans-o 37.8 1.9E+02 0.0041 26.0 8.0 83 120-210 85-172 (309)
343 PF04131 NanE: Putative N-acet 37.6 82 0.0018 27.1 5.3 99 90-209 20-119 (192)
344 TIGR00587 nfo apurinic endonuc 37.5 2.2E+02 0.0048 24.9 8.3 84 129-213 15-112 (274)
345 PLN02411 12-oxophytodienoate r 37.3 2.2E+02 0.0048 26.7 8.6 83 130-212 170-283 (391)
346 PF00218 IGPS: Indole-3-glycer 37.0 1.3E+02 0.0028 26.8 6.7 61 129-206 122-182 (254)
347 PRK13384 delta-aminolevulinic 37.0 3.5E+02 0.0076 25.2 10.3 127 64-209 16-167 (322)
348 cd07944 DRE_TIM_HOA_like 4-hyd 37.0 2.5E+02 0.0053 24.8 8.5 70 129-206 86-155 (266)
349 PRK04180 pyridoxal biosynthesi 36.9 49 0.0011 30.3 4.0 67 128-207 27-101 (293)
350 cd00429 RPE Ribulose-5-phospha 36.7 1.8E+02 0.0039 23.6 7.2 69 128-206 15-84 (211)
351 PLN02979 glycolate oxidase 36.6 2E+02 0.0044 27.1 8.2 73 128-209 234-307 (366)
352 PF01964 ThiC: ThiC family; I 36.6 51 0.0011 31.6 4.2 99 105-211 57-161 (420)
353 PRK00278 trpC indole-3-glycero 36.5 1.7E+02 0.0038 25.7 7.4 64 129-206 74-137 (260)
354 cd04737 LOX_like_FMN L-Lactate 36.4 1.9E+02 0.0041 26.9 7.9 74 129-211 233-307 (351)
355 PRK00043 thiE thiamine-phospha 36.4 1.4E+02 0.003 24.5 6.5 75 128-211 114-190 (212)
356 PRK07455 keto-hydroxyglutarate 36.3 1.6E+02 0.0034 24.6 6.8 70 123-209 22-91 (187)
357 cd04742 NPD_FabD 2-Nitropropan 36.2 2E+02 0.0044 27.6 8.2 76 128-213 166-252 (418)
358 COG1891 Uncharacterized protei 36.2 2.8E+02 0.006 24.1 8.2 112 88-210 36-152 (235)
359 cd00381 IMPDH IMPDH: The catal 35.9 1.9E+02 0.0042 26.3 7.8 79 128-212 146-229 (325)
360 PF00290 Trp_syntA: Tryptophan 35.8 2.6E+02 0.0057 24.9 8.5 12 156-167 71-82 (259)
361 PRK06096 molybdenum transport 35.7 75 0.0016 28.8 5.1 93 97-207 113-214 (284)
362 PRK04302 triosephosphate isome 35.7 2.7E+02 0.0059 23.5 10.6 120 61-207 15-139 (223)
363 PRK11858 aksA trans-homoaconit 35.6 2.4E+02 0.0052 26.2 8.5 87 115-210 134-221 (378)
364 PRK09856 fructoselysine 3-epim 35.5 2.2E+02 0.0049 24.2 7.9 88 116-211 9-112 (275)
365 cd02809 alpha_hydroxyacid_oxid 35.5 2.6E+02 0.0056 24.9 8.5 76 128-211 183-258 (299)
366 PRK13587 1-(5-phosphoribosyl)- 35.2 1.9E+02 0.0042 24.9 7.4 25 130-155 36-61 (234)
367 PRK14040 oxaloacetate decarbox 35.1 4.1E+02 0.0088 26.6 10.5 84 121-209 23-117 (593)
368 CHL00200 trpA tryptophan synth 35.0 2.9E+02 0.0064 24.5 8.7 13 194-206 111-123 (263)
369 PF04776 DUF626: Protein of un 35.0 54 0.0012 26.1 3.5 41 144-184 19-66 (118)
370 cd00384 ALAD_PBGS Porphobilino 34.8 3.8E+02 0.0082 24.9 10.5 126 65-209 7-157 (314)
371 PRK10494 hypothetical protein; 34.6 3.2E+02 0.007 24.1 9.6 104 93-212 108-211 (259)
372 PRK01222 N-(5'-phosphoribosyl) 34.6 2.3E+02 0.005 24.1 7.7 70 127-207 12-82 (210)
373 PF01070 FMN_dh: FMN-dependent 34.4 2.2E+02 0.0048 26.4 8.1 70 128-206 236-306 (356)
374 PRK07565 dihydroorotate dehydr 34.3 1.3E+02 0.0029 27.2 6.5 59 145-208 75-133 (334)
375 TIGR00970 leuA_yeast 2-isoprop 34.2 4.3E+02 0.0094 26.2 10.4 90 116-208 170-268 (564)
376 cd02810 DHOD_DHPD_FMN Dihydroo 34.1 1.3E+02 0.0028 26.3 6.2 60 144-207 70-129 (289)
377 PRK03170 dihydrodipicolinate s 34.1 3.2E+02 0.007 23.9 9.9 83 120-211 78-165 (292)
378 PF00490 ALAD: Delta-aminolevu 34.1 3.4E+02 0.0074 25.3 9.0 113 86-209 27-167 (324)
379 PRK11572 copper homeostasis pr 34.0 3E+02 0.0065 24.6 8.5 107 90-212 39-151 (248)
380 PF03460 NIR_SIR_ferr: Nitrite 33.9 48 0.001 22.6 2.8 36 175-211 11-46 (69)
381 PRK05096 guanosine 5'-monophos 33.5 2.4E+02 0.0052 26.5 8.0 69 129-211 111-181 (346)
382 cd01967 Nitrogenase_MoFe_alpha 33.5 2.3E+02 0.0051 26.0 8.1 106 89-212 214-319 (406)
383 COG1534 Predicted RNA-binding 33.5 1.6E+02 0.0035 22.7 5.8 69 132-207 7-75 (97)
384 TIGR01108 oadA oxaloacetate de 33.2 3.8E+02 0.0082 26.7 9.9 82 122-211 88-173 (582)
385 PRK09284 thiamine biosynthesis 33.1 1E+02 0.0022 30.8 5.8 100 105-211 213-317 (607)
386 COG0352 ThiE Thiamine monophos 32.8 2.1E+02 0.0045 24.8 7.2 66 128-210 24-89 (211)
387 TIGR01663 PNK-3'Pase polynucle 32.7 2.2E+02 0.0048 28.0 8.1 82 107-206 368-450 (526)
388 PLN02617 imidazole glycerol ph 32.7 1.8E+02 0.0038 28.8 7.4 77 128-210 270-355 (538)
389 cd04736 MDH_FMN Mandelate dehy 32.5 1.3E+02 0.0028 28.2 6.2 67 128-207 247-316 (361)
390 PRK14041 oxaloacetate decarbox 32.5 1.2E+02 0.0026 29.5 6.1 109 50-168 139-249 (467)
391 PRK05848 nicotinate-nucleotide 32.2 1.5E+02 0.0033 26.6 6.4 84 105-207 116-207 (273)
392 PF13653 GDPD_2: Glycerophosph 31.9 48 0.0011 20.0 2.2 16 193-208 11-26 (30)
393 PRK09234 fbiC FO synthase; Rev 31.8 2.4E+02 0.0051 29.5 8.5 77 122-206 557-642 (843)
394 PLN02495 oxidoreductase, actin 31.8 1.4E+02 0.003 28.2 6.4 57 147-207 88-145 (385)
395 smart00642 Aamy Alpha-amylase 31.7 1E+02 0.0023 25.2 4.9 22 161-183 70-91 (166)
396 COG0552 FtsY Signal recognitio 31.7 2.4E+02 0.0052 26.4 7.7 75 93-172 178-252 (340)
397 PRK12656 fructose-6-phosphate 31.6 3.5E+02 0.0076 23.6 9.1 165 10-207 18-187 (222)
398 PF00724 Oxidored_FMN: NADH:fl 31.5 1.2E+02 0.0026 27.7 5.7 80 130-209 154-256 (341)
399 TIGR01496 DHPS dihydropteroate 31.4 3.3E+02 0.0072 23.9 8.4 80 124-208 143-241 (257)
400 PRK11197 lldD L-lactate dehydr 31.3 2.3E+02 0.005 26.8 7.7 74 128-209 256-329 (381)
401 cd04731 HisF The cyclase subun 31.3 3.3E+02 0.0071 23.1 9.7 100 90-208 56-168 (243)
402 PLN02444 HMP-P synthase 31.2 1.1E+02 0.0024 30.8 5.6 100 105-211 218-322 (642)
403 PLN02274 inosine-5'-monophosph 31.1 1.7E+02 0.0037 28.6 7.0 108 90-212 246-383 (505)
404 TIGR01284 alt_nitrog_alph nitr 31.0 2.9E+02 0.0063 26.4 8.5 141 44-212 215-359 (457)
405 PRK08072 nicotinate-nucleotide 31.0 1.1E+02 0.0024 27.4 5.4 84 105-207 122-213 (277)
406 cd04732 HisA HisA. Phosphorib 30.9 3.2E+02 0.0069 22.8 8.2 149 43-212 62-222 (234)
407 TIGR00736 nifR3_rel_arch TIM-b 30.5 2.9E+02 0.0062 24.2 7.7 181 9-211 17-222 (231)
408 PHA02737 hypothetical protein; 30.0 16 0.00035 26.7 -0.1 35 85-128 27-61 (72)
409 PRK00748 1-(5-phosphoribosyl)- 30.0 3E+02 0.0065 23.0 7.6 69 131-210 36-104 (233)
410 PRK08745 ribulose-phosphate 3- 29.8 3.7E+02 0.008 23.3 8.5 86 43-136 75-166 (223)
411 TIGR01163 rpe ribulose-phospha 29.7 2.1E+02 0.0045 23.3 6.5 17 129-145 15-31 (210)
412 cd04824 eu_ALAD_PBGS_cysteine_ 29.5 4.7E+02 0.01 24.3 10.4 128 65-209 7-161 (320)
413 PRK08673 3-deoxy-7-phosphohept 29.4 4.6E+02 0.01 24.3 10.3 149 43-208 146-298 (335)
414 TIGR00007 phosphoribosylformim 29.4 3.2E+02 0.0069 22.9 7.7 70 130-210 33-102 (230)
415 cd02922 FCB2_FMN Flavocytochro 28.7 3E+02 0.0066 25.4 7.9 78 128-212 224-303 (344)
416 cd01573 modD_like ModD; Quinol 28.7 1.5E+02 0.0033 26.4 5.8 87 105-209 116-210 (272)
417 PRK05927 hypothetical protein; 28.1 3.6E+02 0.0079 24.9 8.4 50 121-172 75-124 (350)
418 PRK04180 pyridoxal biosynthesi 28.1 2E+02 0.0044 26.4 6.5 86 90-209 62-148 (293)
419 PRK05458 guanosine 5'-monophos 28.1 2.5E+02 0.0054 25.9 7.2 74 128-212 151-233 (326)
420 TIGR00078 nadC nicotinate-nucl 28.1 1.4E+02 0.003 26.6 5.4 77 119-208 120-204 (265)
421 PRK13210 putative L-xylulose 5 28.0 3.2E+02 0.0069 23.3 7.6 21 189-209 94-114 (284)
422 PRK13209 L-xylulose 5-phosphat 27.7 3E+02 0.0065 23.6 7.4 79 130-211 26-121 (283)
423 cd01979 Pchlide_reductase_N Pc 27.6 4.6E+02 0.0099 24.3 9.0 102 90-212 208-309 (396)
424 PRK09997 hydroxypyruvate isome 27.4 1.4E+02 0.0031 25.4 5.3 24 189-212 85-108 (258)
425 PRK13398 3-deoxy-7-phosphohept 27.1 4.5E+02 0.0097 23.4 11.3 92 115-208 137-232 (266)
426 TIGR00693 thiE thiamine-phosph 27.1 3.4E+02 0.0074 22.0 7.4 62 129-207 17-78 (196)
427 TIGR01286 nifK nitrogenase mol 27.0 6E+02 0.013 24.8 10.2 124 59-211 272-395 (515)
428 cd02067 B12-binding B12 bindin 27.0 2.6E+02 0.0056 20.9 6.1 73 53-141 28-105 (119)
429 KOG2367|consensus 26.9 1.7E+02 0.0036 29.0 6.0 34 116-149 70-103 (560)
430 cd01568 QPRTase_NadC Quinolina 26.9 1.5E+02 0.0032 26.3 5.4 77 120-209 124-208 (269)
431 PRK14024 phosphoribosyl isomer 26.8 4.1E+02 0.0089 22.8 8.1 65 130-197 37-120 (241)
432 PRK05742 nicotinate-nucleotide 26.6 1.5E+02 0.0032 26.8 5.3 84 105-208 124-215 (277)
433 PLN02321 2-isopropylmalate syn 26.6 4.2E+02 0.0091 26.8 9.0 81 127-207 167-258 (632)
434 TIGR00683 nanA N-acetylneurami 26.3 4.6E+02 0.01 23.2 10.8 93 106-211 69-166 (290)
435 PRK06106 nicotinate-nucleotide 26.1 1.4E+02 0.003 27.1 5.1 40 159-207 180-219 (281)
436 PF05913 DUF871: Bacterial pro 26.1 1.2E+02 0.0026 28.3 4.8 63 117-184 7-69 (357)
437 TIGR03699 mena_SCO4550 menaqui 26.0 3.8E+02 0.0083 24.0 8.0 47 121-169 71-117 (340)
438 PRK07226 fructose-bisphosphate 25.9 4.5E+02 0.0097 23.0 10.8 93 62-167 157-251 (267)
439 PRK06543 nicotinate-nucleotide 25.8 1.6E+02 0.0036 26.6 5.5 87 105-207 123-218 (281)
440 PRK09485 mmuM homocysteine met 25.8 75 0.0016 28.6 3.3 26 185-210 42-67 (304)
441 cd01572 QPRTase Quinolinate ph 25.6 1.6E+02 0.0035 26.2 5.3 76 121-208 126-208 (268)
442 PRK12677 xylose isomerase; Pro 25.4 3.8E+02 0.0082 25.1 8.0 22 191-212 116-137 (384)
443 TIGR02631 xylA_Arthro xylose i 25.2 4.3E+02 0.0094 24.7 8.4 90 118-212 23-138 (382)
444 cd03412 CbiK_N Anaerobic cobal 25.1 3E+02 0.0065 21.4 6.3 60 131-196 62-121 (127)
445 TIGR00036 dapB dihydrodipicoli 25.1 1.9E+02 0.0041 25.4 5.7 59 140-209 67-125 (266)
446 PRK00230 orotidine 5'-phosphat 24.9 1.6E+02 0.0035 25.3 5.1 72 90-167 155-227 (230)
447 PRK08649 inosine 5-monophospha 24.9 3.5E+02 0.0076 25.3 7.7 70 128-211 144-217 (368)
448 PF02581 TMP-TENI: Thiamine mo 24.5 1.6E+02 0.0034 24.0 4.8 64 127-207 14-77 (180)
449 TIGR00262 trpA tryptophan synt 24.2 2.5E+02 0.0054 24.7 6.3 69 131-213 108-176 (256)
450 TIGR01361 DAHP_synth_Bsub phos 24.2 5E+02 0.011 22.9 10.7 88 116-208 136-230 (260)
451 PLN02417 dihydrodipicolinate s 24.2 5E+02 0.011 22.9 11.0 94 106-211 69-163 (280)
452 PRK06806 fructose-bisphosphate 24.0 5.3E+02 0.011 23.1 11.5 104 92-211 61-175 (281)
453 PRK13964 coaD phosphopantethei 23.6 2.9E+02 0.0063 22.3 6.1 22 130-152 20-41 (140)
454 COG0269 SgbH 3-hexulose-6-phos 23.4 1.3E+02 0.0029 26.3 4.3 41 161-207 45-85 (217)
455 PRK00366 ispG 4-hydroxy-3-meth 23.4 3.7E+02 0.008 25.4 7.4 74 94-185 68-142 (360)
456 smart00851 MGS MGS-like domain 23.3 1.1E+02 0.0024 22.0 3.3 40 99-149 24-63 (90)
457 PRK01261 aroD 3-dehydroquinate 23.2 5E+02 0.011 22.6 9.7 87 105-206 17-103 (229)
458 PF07302 AroM: AroM protein; 23.1 1.6E+02 0.0035 25.8 4.8 144 50-207 27-183 (221)
459 cd00953 KDG_aldolase KDG (2-ke 23.0 5.2E+02 0.011 22.7 8.5 82 120-211 73-160 (279)
460 TIGR03326 rubisco_III ribulose 22.9 78 0.0017 30.2 3.0 68 138-209 109-180 (412)
461 cd02808 GltS_FMN Glutamate syn 22.7 4.4E+02 0.0096 24.6 8.0 77 130-212 229-317 (392)
462 COG3142 CutC Uncharacterized p 22.7 2.7E+02 0.0059 24.8 6.1 104 87-198 6-113 (241)
463 TIGR01282 nifD nitrogenase mol 22.6 4.8E+02 0.01 25.0 8.3 141 46-212 225-368 (466)
464 TIGR02945 SUF_assoc FeS assemb 22.6 83 0.0018 23.2 2.5 42 106-149 37-80 (99)
465 PRK05234 mgsA methylglyoxal sy 22.6 1.8E+02 0.0039 23.4 4.7 61 99-171 43-103 (142)
466 PRK09427 bifunctional indole-3 22.5 2.4E+02 0.0052 27.2 6.2 61 129-206 123-183 (454)
467 PRK09989 hypothetical protein; 22.5 4.9E+02 0.011 22.1 11.1 110 90-207 38-174 (258)
468 cd08205 RuBisCO_IV_RLP Ribulos 22.4 1.5E+02 0.0032 27.7 4.6 71 136-208 93-165 (367)
469 PRK09282 pyruvate carboxylase 22.3 7.8E+02 0.017 24.6 9.9 77 122-206 93-171 (592)
470 PRK06559 nicotinate-nucleotide 22.3 2E+02 0.0044 26.2 5.4 84 105-207 131-222 (290)
471 PTZ00095 40S ribosomal protein 22.3 32 0.00068 29.1 0.2 12 203-214 56-67 (169)
472 PRK13585 1-(5-phosphoribosyl)- 22.2 2E+02 0.0044 24.3 5.2 71 128-212 152-225 (241)
473 cd04740 DHOD_1B_like Dihydroor 22.2 2.3E+02 0.0049 24.9 5.7 58 145-207 63-120 (296)
474 PF01645 Glu_synthase: Conserv 22.1 3.4E+02 0.0073 25.6 7.0 86 116-208 146-233 (368)
475 COG2082 CobH Precorrin isomera 22.1 76 0.0016 27.7 2.5 52 90-150 137-188 (210)
476 PRK07534 methionine synthase I 22.1 1E+02 0.0022 28.4 3.5 26 185-210 41-66 (336)
477 cd08209 RLP_DK-MTP-1-P-enolase 22.0 71 0.0015 30.3 2.5 22 185-207 137-158 (391)
478 cd06556 ICL_KPHMT Members of t 21.6 5.5E+02 0.012 22.5 10.8 79 115-207 78-174 (240)
479 PRK13125 trpA tryptophan synth 21.4 5.3E+02 0.011 22.2 9.5 129 56-211 81-216 (244)
480 TIGR02151 IPP_isom_2 isopenten 21.2 6.3E+02 0.014 23.0 9.7 91 106-212 178-286 (333)
481 PF09505 Dimeth_Pyl: Dimethyla 21.1 2.1E+02 0.0046 27.1 5.3 83 117-211 267-360 (466)
482 COG2040 MHT1 Homocysteine/sele 21.0 1.5E+02 0.0032 27.4 4.2 60 52-119 182-241 (300)
483 cd07942 DRE_TIM_LeuA Mycobacte 20.8 4.7E+02 0.01 23.4 7.5 90 115-209 141-241 (284)
484 cd08210 RLP_RrRLP Ribulose bis 20.7 1E+02 0.0022 28.9 3.2 67 138-208 91-160 (364)
485 PF01729 QRPTase_C: Quinolinat 20.5 2.5E+02 0.0053 23.3 5.2 40 159-207 66-105 (169)
486 COG2861 Uncharacterized protei 20.5 4E+02 0.0086 24.0 6.7 33 115-152 212-244 (250)
487 cd04823 ALAD_PBGS_aspartate_ri 20.5 7E+02 0.015 23.2 10.6 127 65-209 10-162 (320)
488 TIGR01285 nifN nitrogenase mol 20.5 7.3E+02 0.016 23.4 10.1 124 59-212 221-344 (432)
489 COG0541 Ffh Signal recognition 20.5 4.1E+02 0.009 25.9 7.3 71 95-172 141-213 (451)
490 PRK01261 aroD 3-dehydroquinate 20.4 4E+02 0.0086 23.2 6.7 63 130-210 91-153 (229)
491 cd00532 MGS-like MGS-like doma 20.3 1.1E+02 0.0023 23.2 2.8 60 99-170 36-95 (112)
492 TIGR01093 aroD 3-dehydroquinat 20.2 5.4E+02 0.012 21.8 10.9 89 110-210 61-156 (228)
493 PRK09549 mtnW 2,3-diketo-5-met 20.1 92 0.002 29.7 2.8 66 138-208 99-169 (407)
494 PRK07896 nicotinate-nucleotide 20.1 2E+02 0.0044 26.1 5.0 40 158-207 185-224 (289)
495 PF00846 Hanta_nucleocap: Hant 20.0 35 0.00075 32.6 0.0 38 86-131 201-239 (428)
No 1
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.3e-57 Score=389.23 Aligned_cols=157 Identities=27% Similarity=0.354 Sum_probs=148.8
Q ss_pred HHhhhhhcccCCCCCCCHHHHHHHHHHhhcc-CchhhhccccccCcccHHHHHHhhhcCCC-CCCeEEEecCCCCCCCCH
Q psy965 47 LKIIEFIDLTTLSGDDTEAVVETLTLKAIQP-LSEELKEKVLRGFVSTVWHGSDNLKTKLV-YQPCLSQPAGFPSGQYLL 124 (214)
Q Consensus 47 ~~~~~~ID~TlL~~~~T~~~I~~lc~eA~~~-f~~~~~~~~~cv~P~~V~~a~~~L~~~gs-~v~vatV~igFP~G~~~~ 124 (214)
.+++++||||+|+|++|+++|.+||++|.+| |. .+|+||+||+.|++.|+ |+ .++||+| +|||+|.+++
T Consensus 6 ~~~~~~IDhT~Lk~~~T~~~I~~l~~eA~~~~f~------avCV~P~~V~~A~~~l~--g~~~~~v~tV-igFP~G~~~t 76 (228)
T COG0274 6 MQLAKLIDHTLLKPDATEEDIARLCAEAKEYGFA------AVCVNPSYVPLAKEALK--GSTVVRVCTV-IGFPLGANTT 76 (228)
T ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHhhCce------EEEECcchHHHHHHHhc--cCCCeEEEEe-cCCCCCCChH
Confidence 5789999999999999999999999999986 55 67999999999999999 65 4569999 8999999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCC
Q psy965 125 ETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSD 204 (214)
Q Consensus 125 ~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaD 204 (214)
++|++|+++|+++||||||||||+|++|+|+|++|++||++++++|++..+||||||||+| +++++++||++|+++|||
T Consensus 77 ~~K~~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~L-t~ee~~~A~~i~~~aGAd 155 (228)
T COG0274 77 AVKAAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLL-TDEEKRKACEIAIEAGAD 155 (228)
T ss_pred HHHHHHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEecccc-CHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999974599999999999 779999999999999999
Q ss_pred EEEcCCCCC
Q psy965 205 FIKTSGSIQ 213 (214)
Q Consensus 205 FIKTSTGf~ 213 (214)
||||||||.
T Consensus 156 FVKTSTGf~ 164 (228)
T COG0274 156 FVKTSTGFS 164 (228)
T ss_pred EEEcCCCCC
Confidence 999999996
No 2
>KOG3981|consensus
Probab=100.00 E-value=1e-55 Score=382.37 Aligned_cols=205 Identities=37% Similarity=0.539 Sum_probs=193.7
Q ss_pred CCCCcCCchhhhhcccCHHHHHHHHHHhhhhhhhhhHhH----HHHHHHhhhhhcccCCCCCCCHHHHHHHHHHhhccCc
Q psy965 4 DQYNTTDFKWVHDIQINTKYLEDLTRQFEAVDLSRIKNK----KSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLS 79 (214)
Q Consensus 4 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~ID~TlL~~~~T~~~I~~lc~eA~~~f~ 79 (214)
++..+||++|++.++++...+++++.+++. |+ .++ .+|+++++.+||+|+|++|+|..+|.+||.+|.+||+
T Consensus 13 ~~~~~~D~s~~~k~~~~~~~v~eiA~~is~---r~-~v~k~~~~aw~lrai~~iDLTTL~GDDTasnv~rLc~rA~yP~~ 88 (326)
T KOG3981|consen 13 TYKGRFDVSTFEKEVGRDFDVQEIAQAISK---RE-QVAKNLRNAWELRAIQYIDLTTLNGDDTASNVVRLCKRAIYPVE 88 (326)
T ss_pred ccCCccCHHHHHHHhccchhHHHHHHHHHH---HH-HHHHhhHHHHHHHHhHhheeeeecCCccHHHHHHHHHHhcCCCC
Confidence 478899999999999999999999999998 76 555 8999999999999999999999999999999999987
Q ss_pred hhhhcc-----------ccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCh
Q psy965 80 EELKEK-----------VLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQR 148 (214)
Q Consensus 80 ~~~~~~-----------~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~ 148 (214)
++++.. .+||||.+|..|++.|+..+.+++|++|+.|||+||+++.+|+.|++.|+.+||+|||+|||+
T Consensus 89 p~~~~~~~~~dp~ihtaaVCVYPaRv~Da~kal~~~~~n~~iasVA~GFPsGQyhLktrl~Ei~lav~dGATEIDiVInR 168 (326)
T KOG3981|consen 89 PQFFDKFFATDPSIHTAAVCVYPARVADAKKALASSKLNSNIASVAGGFPSGQYHLKTRLLEIELAVADGATEIDIVINR 168 (326)
T ss_pred HHHHHHHhccCCccceeeEEeehHHHHHHHHHHHhccCCcchHHHhcCCCCcchHHHHHHHHHHHHHhcCCceEEEEeeh
Confidence 654433 359999999999999997778899999999999999999999999999999999999999999
Q ss_pred hHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCCC
Q psy965 149 SLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSIQ 213 (214)
Q Consensus 149 ~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf~ 213 (214)
...+.|||+.+|+|+.+++++||. .|||.||.||+|+|..++|+|+++||+||+||||||||+.
T Consensus 169 ~laL~gdWea~ydEv~~~rkACG~-AHLKTILAtGELgTl~NVYkAsm~~mmAGsDFIKTSTGKE 232 (326)
T KOG3981|consen 169 ALALDGDWEAVYDEVLACRKACGS-AHLKTILATGELGTLSNVYKASMASMMAGSDFIKTSTGKE 232 (326)
T ss_pred hhhhcccHHHHHHHHHHHHHHhhH-HHHHHHhhhcccchhHHHHHHHHHHHHhcccceecCCccc
Confidence 999999999999999999999997 9999999999999999999999999999999999999985
No 3
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=100.00 E-value=1.7e-54 Score=380.52 Aligned_cols=162 Identities=29% Similarity=0.334 Sum_probs=149.4
Q ss_pred HHHHhhhhhcccCCCCCCCHHHHHHHHHHhhc--c-CchhhhccccccCcccHHHHHHhhhcCCC-CCCeEEEecCCCCC
Q psy965 45 LLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQ--P-LSEELKEKVLRGFVSTVWHGSDNLKTKLV-YQPCLSQPAGFPSG 120 (214)
Q Consensus 45 ~l~~~~~~ID~TlL~~~~T~~~I~~lc~eA~~--~-f~~~~~~~~~cv~P~~V~~a~~~L~~~gs-~v~vatV~igFP~G 120 (214)
|.+.++++||||+|+|++|+++|+++|++|++ + |+ .+|+||+||+.|++.|++.++ ++++|+| +|||+|
T Consensus 6 ~~~~~~~~ID~TlL~p~~T~~~I~~lc~eA~~~~~~fa------aVcV~P~~v~~a~~~L~~~~~~~vkv~tV-igFP~G 78 (257)
T PRK05283 6 AALRALSLMDLTTLNDDDTDEKVIALCHQAKTPVGNTA------AICIYPRFIPIARKTLREQGTPEIRIATV-TNFPHG 78 (257)
T ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCCee------EEEECHHHHHHHHHHhcccCCCCCeEEEE-ecCCCC
Confidence 34678999999999999999999999999997 2 55 679999999999999973234 6999999 899999
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHH
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMF 200 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~ 200 (214)
++++++|++|+++|+++||+|||||+|+|++++|+|+++++||++++++|+++.++|||||||+|+++|+|++||++|++
T Consensus 79 ~~~t~~K~~Ea~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~ 158 (257)
T PRK05283 79 NDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIK 158 (257)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999834899999999999554469999999999
Q ss_pred cCCCEEEcCCCCC
Q psy965 201 AGSDFIKTSGSIQ 213 (214)
Q Consensus 201 aGaDFIKTSTGf~ 213 (214)
+|||||||||||.
T Consensus 159 aGADFVKTSTGf~ 171 (257)
T PRK05283 159 AGADFIKTSTGKV 171 (257)
T ss_pred hCCCEEEcCCCCC
Confidence 9999999999995
No 4
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=100.00 E-value=1.2e-52 Score=360.16 Aligned_cols=154 Identities=29% Similarity=0.339 Sum_probs=148.0
Q ss_pred hhhhhcccCCCCCCCHHHHHHHHHHhhcc-CchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHH
Q psy965 49 IIEFIDLTTLSGDDTEAVVETLTLKAIQP-LSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETR 127 (214)
Q Consensus 49 ~~~~ID~TlL~~~~T~~~I~~lc~eA~~~-f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K 127 (214)
++++||||+|+|++|+++|+++|++|+++ |+ .+|+||+||+.+++.|+ |+++++|+| +|||+|+++++.|
T Consensus 2 l~~~ID~t~L~p~~t~~~i~~lc~~A~~~~~~------avcv~p~~v~~a~~~l~--~~~v~v~tV-igFP~G~~~~~~K 72 (211)
T TIGR00126 2 LAKLIDHTALKADTTEEDIITLCAQAKTYKFA------AVCVNPSYVPLAKELLK--GTEVRICTV-VGFPLGASTTDVK 72 (211)
T ss_pred hhHheeccCCCCCCCHHHHHHHHHHHHhhCCc------EEEeCHHHHHHHHHHcC--CCCCeEEEE-eCCCCCCCcHHHH
Confidence 57999999999999999999999999975 65 67999999999999998 799999999 8999999999999
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
++|+++|+++||||||||+|+|++++|+|+++++||++++++|++ .++|||+|+++| +++++.+||++|+++||||||
T Consensus 73 ~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g-~~lKvIlE~~~L-~~~ei~~a~~ia~eaGADfvK 150 (211)
T TIGR00126 73 LYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAG-VLLKVIIETGLL-TDEEIRKACEICIDAGADFVK 150 (211)
T ss_pred HHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCC-CeEEEEEecCCC-CHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999999999999999999999999999999985 899999999999 778999999999999999999
Q ss_pred cCCCCC
Q psy965 208 TSGSIQ 213 (214)
Q Consensus 208 TSTGf~ 213 (214)
|||||.
T Consensus 151 TsTGf~ 156 (211)
T TIGR00126 151 TSTGFG 156 (211)
T ss_pred eCCCCC
Confidence 999995
No 5
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=100.00 E-value=3.2e-50 Score=347.10 Aligned_cols=155 Identities=26% Similarity=0.294 Sum_probs=148.8
Q ss_pred HhhhhhcccCCCCCCCHHHHHHHHHHhhcc-CchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHH
Q psy965 48 KIIEFIDLTTLSGDDTEAVVETLTLKAIQP-LSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLET 126 (214)
Q Consensus 48 ~~~~~ID~TlL~~~~T~~~I~~lc~eA~~~-f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~ 126 (214)
+++++||||+|+|++|+++|+++|++|+++ |+ .+|+||+||+.+++.|+ |+++++|+| +|||+|+++++.
T Consensus 5 ~l~~~ID~T~L~p~~t~~~i~~~~~~A~~~~~~------avcv~p~~v~~a~~~l~--~~~v~v~tV-igFP~G~~~~~~ 75 (221)
T PRK00507 5 DIAKYIDHTLLKPEATEEDIDKLCDEAKEYGFA------SVCVNPSYVKLAAELLK--GSDVKVCTV-IGFPLGANTTAV 75 (221)
T ss_pred HHHhhhhhccCCCCCCHHHHHHHHHHHHHhCCe------EEEECHHHHHHHHHHhC--CCCCeEEEE-ecccCCCChHHH
Confidence 579999999999999999999999999975 65 67999999999999998 899999999 799999999999
Q ss_pred HHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
|+.|+++|+++||+|||||+|++++++|+|+++++||++++++|++ .++|||||+++| +++++.++|++|+++|+|||
T Consensus 76 K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~-~~lKvIlEt~~L-~~e~i~~a~~~~~~agadfI 153 (221)
T PRK00507 76 KAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGG-AVLKVIIETCLL-TDEEKVKACEIAKEAGADFV 153 (221)
T ss_pred HHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCC-ceEEEEeecCcC-CHHHHHHHHHHHHHhCCCEE
Confidence 9999999999999999999999999999999999999999999976 899999999999 78999999999999999999
Q ss_pred EcCCCCC
Q psy965 207 KTSGSIQ 213 (214)
Q Consensus 207 KTSTGf~ 213 (214)
||||||.
T Consensus 154 KTsTG~~ 160 (221)
T PRK00507 154 KTSTGFS 160 (221)
T ss_pred EcCCCCC
Confidence 9999994
No 6
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=100.00 E-value=3.1e-43 Score=298.26 Aligned_cols=154 Identities=29% Similarity=0.350 Sum_probs=146.4
Q ss_pred hhhhhcccCCCCCCCHHHHHHHHHHhhcc-CchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHH
Q psy965 49 IIEFIDLTTLSGDDTEAVVETLTLKAIQP-LSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETR 127 (214)
Q Consensus 49 ~~~~ID~TlL~~~~T~~~I~~lc~eA~~~-f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K 127 (214)
++++||||+|+|+.|.++|+++|++|.++ +. .+|++|.|++.+++.|+ ++++.++++ +|||+|+.+++.|
T Consensus 1 ~~~~iDht~l~p~~t~~~i~~~~~~a~~~~~~------av~v~p~~v~~~~~~l~--~~~~~v~~~-~~fp~g~~~~~~k 71 (203)
T cd00959 1 LASLIDHTLLKPDATEEDIRKLCDEAKEYGFA------AVCVNPCFVPLAREALK--GSGVKVCTV-IGFPLGATTTEVK 71 (203)
T ss_pred CccceeeccCCCCCCHHHHHHHHHHHHHcCCC------EEEEcHHHHHHHHHHcC--CCCcEEEEE-EecCCCCCcHHHH
Confidence 46899999999999999999999999974 44 57999999999999998 688999999 7999999999999
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+.|+++|+++||||||+|+|+|++++|+|+++++||.+++++|++ .++|||+|+++| ++++|.+||++|+++||||||
T Consensus 72 ~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g-~~lkvI~e~~~l-~~~~i~~a~ria~e~GaD~IK 149 (203)
T cd00959 72 VAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGG-APLKVILETGLL-TDEEIIKACEIAIEAGADFIK 149 (203)
T ss_pred HHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCC-CeEEEEEecCCC-CHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999999999999999999999999999999985 899999999999 789999999999999999999
Q ss_pred cCCCCC
Q psy965 208 TSGSIQ 213 (214)
Q Consensus 208 TSTGf~ 213 (214)
|||||.
T Consensus 150 TsTG~~ 155 (203)
T cd00959 150 TSTGFG 155 (203)
T ss_pred cCCCCC
Confidence 999995
No 7
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=100.00 E-value=4.6e-35 Score=252.48 Aligned_cols=153 Identities=27% Similarity=0.264 Sum_probs=139.8
Q ss_pred hhhhhcccCCCCCCCHH-HHHHHHHHhhcc-CchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHH
Q psy965 49 IIEFIDLTTLSGDDTEA-VVETLTLKAIQP-LSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLET 126 (214)
Q Consensus 49 ~~~~ID~TlL~~~~T~~-~I~~lc~eA~~~-f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~ 126 (214)
++.+||||+|+++.|.. +++++|+++.++ +. .+|++|.|++.+.+.+. ++++++++| ++||+|.++++.
T Consensus 2 ~~~~iDh~~l~~~~~~~~~~~~~~~~a~~~~~~------av~v~p~~~~~~~~~~~--~~~~~~~~v-i~fp~g~~~~~~ 72 (236)
T PF01791_consen 2 LAVAIDHTLLHGPMTGEEDIKKLCREAIEYGFD------AVCVTPGYVKPAAELLA--GSGVKVGLV-IGFPFGTSTTEP 72 (236)
T ss_dssp EEEEEEEEHHHTTHHHHHHHHHHHHHHHHHTSS------EEEEEGGGHHHHHHHST--TSTSEEEEE-ESTTTSSSTHHH
T ss_pred eeeeecCCCcCCCCCchhhHHHHHHHHHHhCCC------EEEECHHHHHHHHHHhh--ccccccceE-EEeCCCCCcccc
Confidence 47789999999999998 999999999974 44 57999999999999998 788999999 899999999999
Q ss_pred H-----HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHH--------HHHH
Q psy965 127 R-----LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSE--------NIYC 193 (214)
Q Consensus 127 K-----~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e--------~i~~ 193 (214)
| +.|+++|+++||||||+|+|++++++|+|+++.+|++++++.|++ ..+|||+| ++|.+.+ .|..
T Consensus 73 k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~-~gl~vIlE-~~l~~~~~~~~~~~~~I~~ 150 (236)
T PF01791_consen 73 KGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHK-YGLKVILE-PYLRGEEVADEKKPDLIAR 150 (236)
T ss_dssp HTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHT-SEEEEEEE-ECECHHHBSSTTHHHHHHH
T ss_pred ccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhc-CCcEEEEE-EecCchhhcccccHHHHHH
Confidence 9 999999999999999999999999999999999999999999997 89999999 9995444 3899
Q ss_pred HHHHHHHcCCCEEEcCCCC
Q psy965 194 ASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 194 A~~ia~~aGaDFIKTSTGf 212 (214)
||++|+++||||||||||+
T Consensus 151 a~ria~e~GaD~vKt~tg~ 169 (236)
T PF01791_consen 151 AARIAAELGADFVKTSTGK 169 (236)
T ss_dssp HHHHHHHTT-SEEEEE-SS
T ss_pred HHHHHHHhCCCEEEecCCc
Confidence 9999999999999999994
No 8
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=99.89 E-value=5.1e-23 Score=180.13 Aligned_cols=148 Identities=11% Similarity=0.111 Sum_probs=129.1
Q ss_pred hhhhcccCCC-CCCCHHHHHHHHHHhhcc-CchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEec--CCCCCCCCHH
Q psy965 50 IEFIDLTTLS-GDDTEAVVETLTLKAIQP-LSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPA--GFPSGQYLLE 125 (214)
Q Consensus 50 ~~~ID~TlL~-~~~T~~~I~~lc~eA~~~-f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~i--gFP~G~~~~~ 125 (214)
+--||||+|+ |..+.++++++|+++.++ |. .+|++|.|++.+.+.. +++++++.+ + +||+|..++.
T Consensus 20 ~~aiDh~~l~gp~~~~~~~~~~~~~a~~~~~~------~v~~~p~~~~~~~~~~---~~~~~~~~~-~~~~~~~g~~~~~ 89 (258)
T TIGR01949 20 IVPMDHGVSNGPIKGLVDIRKTVNEVAEGGAD------AVLLHKGIVRRGHRGY---GKDVGLIIH-LSASTSLSPDPND 89 (258)
T ss_pred EEECCCccccCCCCCcCCHHHHHHHHHhcCCC------EEEeCcchhhhccccc---CCCCcEEEE-EcCCCCCCCCCCc
Confidence 4469999999 999999999999999974 55 6799999999987653 578999988 8 9999999977
Q ss_pred -HHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcC-CceEEEEEe-----ccCCCCHHHHHHHHHHH
Q psy965 126 -TRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTILA-----VGELKTSENIYCASMTA 198 (214)
Q Consensus 126 -~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlE-----t~~L~t~e~i~~A~~ia 198 (214)
.++.++++|++.||++||++.|.+. +++++.+ +++++++++|++ +.+++++++ .+++ +.+++..+++.+
T Consensus 90 ~~~~~~v~~al~~Ga~~v~~~~~~g~--~~~~~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~-~~~~~~~~~~~a 165 (258)
T TIGR01949 90 KRIVTTVEDAIRMGADAVSIHVNVGS--DTEWEQI-RDLGMIAEICDDWGVPLLAMMYPRGPHIDDR-DPELVAHAARLG 165 (258)
T ss_pred ceeeeeHHHHHHCCCCEEEEEEecCC--chHHHHH-HHHHHHHHHHHHcCCCEEEEEeccCcccccc-cHHHHHHHHHHH
Confidence 8999999999999999999999885 4667766 899999999974 478999988 7776 678888999999
Q ss_pred HHcCCCEEEcCCC
Q psy965 199 MFAGSDFIKTSGS 211 (214)
Q Consensus 199 ~~aGaDFIKTSTG 211 (214)
.++||||||||++
T Consensus 166 ~~~GADyikt~~~ 178 (258)
T TIGR01949 166 AELGADIVKTPYT 178 (258)
T ss_pred HHHCCCEEeccCC
Confidence 9999999999854
No 9
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=99.88 E-value=7.5e-23 Score=180.19 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=121.1
Q ss_pred hhhcccCCC-CCCCHHHHHHHHHHhhcc-CchhhhccccccCcccHHHHHHhhhcCCCCCCeEE----EecCC-CCCCCC
Q psy965 51 EFIDLTTLS-GDDTEAVVETLTLKAIQP-LSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLS----QPAGF-PSGQYL 123 (214)
Q Consensus 51 ~~ID~TlL~-~~~T~~~I~~lc~eA~~~-f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vat----V~igF-P~G~~~ 123 (214)
=-+|||+|+ |+.+.++++++|+++.++ |. .+|++|.+++.+.+.+. +++++.. + ++| |.|..
T Consensus 24 ~a~Dh~~l~gp~~~~~d~~~~~~~a~~~~~~------av~v~~~~~~~~~~~~~---~~~~l~~~i~~~-~~~~~~~~~- 92 (267)
T PRK07226 24 VPMDHGVSHGPIDGLVDIRDTVNKVAEGGAD------AVLMHKGLARHGHRGYG---RDVGLIVHLSAS-TSLSPDPND- 92 (267)
T ss_pred EECCCccccCCCcCcCCHHHHHHHHHhcCCC------EEEeCHhHHhhhccccC---CCCcEEEEEcCC-CCCCCCCCc-
Confidence 358999997 999999999999999974 54 57999999999887773 4553333 4 456 66655
Q ss_pred HHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcC-CceEEEE-------EeccCCCCHHHHHHHH
Q psy965 124 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTI-------LAVGELKTSENIYCAS 195 (214)
Q Consensus 124 ~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~-~~~lKvI-------lEt~~L~t~e~i~~A~ 195 (214)
+.|+.++++|++.||||+||++|++.++ ++++++|+++++++|+. +.++||| +|++ + +.+++..++
T Consensus 93 -~~~~~~ve~A~~~Gad~v~~~~~~g~~~---~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~-~-~~~~i~~a~ 166 (267)
T PRK07226 93 -KVLVGTVEEAIKLGADAVSVHVNVGSET---EAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNE-Y-DPEVVAHAA 166 (267)
T ss_pred -ceeeecHHHHHHcCCCEEEEEEecCChh---HHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCC-c-cHHHHHHHH
Confidence 8899999999999999999999998665 78899999999999963 4899999 6888 5 678999999
Q ss_pred HHHHHcCCCEEEcCC
Q psy965 196 MTAMFAGSDFIKTSG 210 (214)
Q Consensus 196 ~ia~~aGaDFIKTST 210 (214)
++|.+.||||||||.
T Consensus 167 ~~a~e~GAD~vKt~~ 181 (267)
T PRK07226 167 RVAAELGADIVKTNY 181 (267)
T ss_pred HHHHHHCCCEEeeCC
Confidence 999999999999983
No 10
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=99.82 E-value=2.9e-20 Score=159.57 Aligned_cols=142 Identities=11% Similarity=-0.036 Sum_probs=123.9
Q ss_pred hhcccCC---CCCCCHHHHHHHHHHhhcc-CchhhhccccccCcccHHHHHHhhhcCCC-C----CCeEEEecCCCCCCC
Q psy965 52 FIDLTTL---SGDDTEAVVETLTLKAIQP-LSEELKEKVLRGFVSTVWHGSDNLKTKLV-Y----QPCLSQPAGFPSGQY 122 (214)
Q Consensus 52 ~ID~TlL---~~~~T~~~I~~lc~eA~~~-f~~~~~~~~~cv~P~~V~~a~~~L~~~gs-~----v~vatV~igFP~G~~ 122 (214)
-+||+++ +|+.|.++++++|+++.++ +. ..|++|.+++.+.+.+. ++ + +..+++ ++|| ..
T Consensus 5 ~~Dh~~~~~~~p~~~~~d~~~~~~~~~~~g~~------av~v~~~~~~~~~~~~~--~~~~~i~~~~~~~~-i~~p--~~ 73 (235)
T cd00958 5 AVDHGIEHGFGPNPGLEDPEETVKLAAEGGAD------AVALTKGIARAYGREYA--GDIPLIVKLNGSTS-LSPK--DD 73 (235)
T ss_pred ecCCcccccCCCCccccCHHHHHHHHHhcCCC------EEEeChHHHHhcccccC--CCCcEEEEECCCCC-CCCC--CC
Confidence 3899999 8999999999999999974 54 56999999999988884 33 3 333677 8999 88
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccC--------CCCHHHHHHH
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGE--------LKTSENIYCA 194 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~--------L~t~e~i~~A 194 (214)
+++.++.++++|++.||+++|+++|.+.. +++++.+++.+++++|++ ..+|+|+|... + +.+++.++
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~---~~~~~~~~i~~v~~~~~~-~g~~~iie~~~~g~~~~~~~-~~~~i~~~ 148 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSE---EEREMLEELARVAAEAHK-YGLPLIAWMYPRGPAVKNEK-DPDLIAYA 148 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCc---hHHHHHHHHHHHHHHHHH-cCCCEEEEEeccCCcccCcc-CHHHHHHH
Confidence 89999999999999999999999998755 478999999999999986 67999999965 5 56889899
Q ss_pred HHHHHHcCCCEEEcC
Q psy965 195 SMTAMFAGSDFIKTS 209 (214)
Q Consensus 195 ~~ia~~aGaDFIKTS 209 (214)
++++.++|||||||+
T Consensus 149 ~~~a~~~GaD~Ik~~ 163 (235)
T cd00958 149 ARIGAELGADIVKTK 163 (235)
T ss_pred HHHHHHHCCCEEEec
Confidence 999999999999997
No 11
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=99.48 E-value=4e-12 Score=103.99 Aligned_cols=151 Identities=31% Similarity=0.389 Sum_probs=122.7
Q ss_pred hcccCCCCCCCHHHHHHHHHHhhcc-CchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHH
Q psy965 53 IDLTTLSGDDTEAVVETLTLKAIQP-LSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEI 131 (214)
Q Consensus 53 ID~TlL~~~~T~~~I~~lc~eA~~~-f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~ 131 (214)
++.++++|..+.+.++++++.+.+. .. ..++.+.+++.+++... +..+++.+- +|.|.|..+++....++
T Consensus 1 ~~~~~~~~~~d~~~~~~~~~~~~~~gv~------gi~~~g~~i~~~~~~~~--~~~~~v~~~-v~~~~~~~~~~~~~~~a 71 (201)
T cd00945 1 IDLTLLHPDATLEDIAKLCDEAIEYGFA------AVCVNPGYVRLAADALA--GSDVPVIVV-VGFPTGLTTTEVKVAEV 71 (201)
T ss_pred CcccccCCCCCHHHHHHHHHHHHHhCCc------EEEECHHHHHHHHHHhC--CCCCeEEEE-ecCCCCCCcHHHHHHHH
Confidence 4678888999999999999999852 22 34667788888877664 336888887 79999999999999999
Q ss_pred HHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 132 ELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 132 ~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
+.|.+.|||.+.++.|+....+++.+.+.+.++++++.++.+.++-+-...+...+.+++.++++++.+.|+|+||+|+|
T Consensus 72 ~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 72 EEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred HHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 99999999999999999988888899999999999998821244444443332226788999999999999999999998
Q ss_pred C
Q psy965 212 I 212 (214)
Q Consensus 212 f 212 (214)
+
T Consensus 152 ~ 152 (201)
T cd00945 152 F 152 (201)
T ss_pred C
Confidence 4
No 12
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.36 E-value=0.0014 Score=58.77 Aligned_cols=83 Identities=22% Similarity=0.208 Sum_probs=62.8
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhc-------------------CChhHHHHHHHHHHHHhcCCceEEEEEeccC-----
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLN-------------------NQWPELFSEVKQMKEKCGEKIHMKTILAVGE----- 184 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~s-------------------g~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~----- 184 (214)
.-++.|.+.|+|.||+-..-|+|++ ++...+.+-++++++++++..++.|-+....
T Consensus 145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g 224 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCC
Confidence 3466788899999999988776543 2345678889999999975455655555432
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 185 LKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 185 L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
+ +.++....++.+.++|+|||..|.|+
T Consensus 225 ~-~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 225 L-TLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred C-CHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 3 56788888999999999999988875
No 13
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.15 E-value=0.0019 Score=57.74 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcC-CceEEEEEeccC-CC-CHHHHHHHHHHHHH
Q psy965 124 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGE-LK-TSENIYCASMTAMF 200 (214)
Q Consensus 124 ~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt~~-L~-t~e~i~~A~~ia~~ 200 (214)
...-+..+++|++.|||-+=+-+|+| +..-..-.+++.++++.|+. +.++=.+..-|. .. +.+.|.-|++++.+
T Consensus 93 ~~~l~~sVeeAvrlGAdAV~~~v~~G---s~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaE 169 (264)
T PRK08227 93 NEAVAVDMEDAVRLNACAVAAQVFIG---SEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAE 169 (264)
T ss_pred cccceecHHHHHHCCCCEEEEEEecC---CHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHH
Confidence 45556678999999999999999999 44446677889999999975 344333333332 11 24568889999999
Q ss_pred cCCCEEEcC
Q psy965 201 AGSDFIKTS 209 (214)
Q Consensus 201 aGaDFIKTS 209 (214)
.|||||||.
T Consensus 170 LGADiVK~~ 178 (264)
T PRK08227 170 MGAQIIKTY 178 (264)
T ss_pred HcCCEEecC
Confidence 999999986
No 14
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=96.82 E-value=0.0038 Score=57.80 Aligned_cols=82 Identities=18% Similarity=0.141 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEec---cC-CC-------CHHHHH
Q psy965 124 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV---GE-LK-------TSENIY 192 (214)
Q Consensus 124 ~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt---~~-L~-------t~e~i~ 192 (214)
...-...+++|++.||+-+=+-+|+| +..-..-.+|+.++.+.|+. .-|=+|+.. |. +. ..+.|.
T Consensus 145 ~~~l~~sVedAlrLGAdAV~~tvy~G---s~~E~~ml~~l~~i~~ea~~-~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia 220 (348)
T PRK09250 145 DQALTASVEDALRLGAVAVGATIYFG---SEESRRQIEEISEAFEEAHE-LGLATVLWSYLRNSAFKKDGDYHTAADLTG 220 (348)
T ss_pred cccceecHHHHHHCCCCEEEEEEecC---CHHHHHHHHHHHHHHHHHHH-hCCCEEEEecccCcccCCcccccccHHHHH
Confidence 44455678999999999999999999 45556777899999999975 223344421 11 11 136788
Q ss_pred HHHHHHHHcCCCEEEcC
Q psy965 193 CASMTAMFAGSDFIKTS 209 (214)
Q Consensus 193 ~A~~ia~~aGaDFIKTS 209 (214)
-|+++|.+.|||+|||.
T Consensus 221 ~AaRiaaELGADIVKv~ 237 (348)
T PRK09250 221 QANHLAATIGADIIKQK 237 (348)
T ss_pred HHHHHHHHHcCCEEEec
Confidence 99999999999999985
No 15
>PRK06852 aldolase; Validated
Probab=96.34 E-value=0.011 Score=53.80 Aligned_cols=79 Identities=24% Similarity=0.300 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHCC------CCEEEEecChhHhhcCChhHHHHHHHHHHHHhcC-CceEEEEE---eccC-C---CCHHHH
Q psy965 126 TRLHEIELLAKQK------VDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTIL---AVGE-L---KTSENI 191 (214)
Q Consensus 126 ~K~~E~~~Ai~~G------AdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIl---Et~~-L---~t~e~i 191 (214)
.-+..+++|++.| ||-+=+-+|+| +..-..-.+++.++++.|+. +.+ +|+ --|. . .+.+.|
T Consensus 116 ~l~~sVeeAvrlG~~~~~~AdAV~v~v~~G---s~~E~~ml~~l~~v~~ea~~~GlP--ll~~~yprG~~i~~~~~~~~i 190 (304)
T PRK06852 116 RQLLDVEQVVEFKENSGLNILGVGYTIYLG---SEYESEMLSEAAQIIYEAHKHGLI--AVLWIYPRGKAVKDEKDPHLI 190 (304)
T ss_pred cceecHHHHHhcCCccCCCceEEEEEEecC---CHHHHHHHHHHHHHHHHHHHhCCc--EEEEeeccCcccCCCccHHHH
Confidence 5556688999999 88999999999 44456677889999999975 233 443 2221 1 123678
Q ss_pred HHHHHHHHHcCCCEEEcC
Q psy965 192 YCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 192 ~~A~~ia~~aGaDFIKTS 209 (214)
.-|+++|.+.|||+|||.
T Consensus 191 a~aaRiaaELGADIVKv~ 208 (304)
T PRK06852 191 AGAAGVAACLGADFVKVN 208 (304)
T ss_pred HHHHHHHHHHcCCEEEec
Confidence 899999999999999996
No 16
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=95.95 E-value=0.26 Score=43.36 Aligned_cols=127 Identities=13% Similarity=0.073 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHhhccCchhhhcccc--ccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCC
Q psy965 61 DDTEAVVETLTLKAIQPLSEELKEKVL--RGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQK 138 (214)
Q Consensus 61 ~~T~~~I~~lc~eA~~~f~~~~~~~~~--cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~G 138 (214)
+...+.|.+..+.|...=. .++ -..|..|+.+++ -+++|||.-+ +.-++.-.|++.|
T Consensus 23 NFd~~~V~~i~~AA~~ggA-----t~vDIAadp~LV~~~~~-----~s~lPICVSa-----------Vep~~f~~aV~AG 81 (242)
T PF04481_consen 23 NFDAESVAAIVKAAEIGGA-----TFVDIAADPELVKLAKS-----LSNLPICVSA-----------VEPELFVAAVKAG 81 (242)
T ss_pred ccCHHHHHHHHHHHHccCC-----ceEEecCCHHHHHHHHH-----hCCCCeEeec-----------CCHHHHHHHHHhC
Confidence 4567788888777764200 122 337888888875 4789988774 3345778899999
Q ss_pred CCEEEEecChhHh-hcCCh---hHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 139 VDEVDIVIQRSLV-LNNQW---PELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 139 AdEID~Vin~~~l-~sg~~---~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
||-|++- |+..| ..|.+ +++.+--++.|+.+++ .+|-|-+--- | ..++-.+.++-..++|+|.|.|--|.
T Consensus 82 AdliEIG-NfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~-~~LsVTVPHi-L-~ld~Qv~LA~~L~~~GaDiIQTEGgt 155 (242)
T PF04481_consen 82 ADLIEIG-NFDSFYAQGRRFSAEEVLALTRETRSLLPD-ITLSVTVPHI-L-PLDQQVQLAEDLVKAGADIIQTEGGT 155 (242)
T ss_pred CCEEEec-chHHHHhcCCeecHHHHHHHHHHHHHhCCC-CceEEecCcc-c-cHHHHHHHHHHHHHhCCcEEEcCCCC
Confidence 9999985 55443 23322 3444444556666666 7777766544 3 44555577778889999999998774
No 17
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.90 E-value=0.027 Score=50.43 Aligned_cols=87 Identities=17% Similarity=0.092 Sum_probs=65.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEe---------cc-C
Q psy965 115 AGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILA---------VG-E 184 (214)
Q Consensus 115 igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlE---------t~-~ 184 (214)
+.+|. --...+...++|+++|||-+=+.||+|.-- -.+-.+++..+++.|++ .-|=++++ .. .
T Consensus 90 l~~~~---~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~---e~~~i~~~~~v~~~a~~-~Gmp~v~~~YpRg~~~~~~~~ 162 (265)
T COG1830 90 LSPDP---NDQVLVATVEDAIRLGADAVGATVYVGSET---EREMIENISQVVEDAHE-LGMPLVAWAYPRGPAIKDEYH 162 (265)
T ss_pred cCCCc---ccceeeeeHHHHHhCCCcEEEEEEecCCcc---hHHHHHHHHHHHHHHHH-cCCceEEEEeccCCccccccc
Confidence 34555 456667789999999999999999998544 35667888999988975 22333432 11 2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 185 LKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 185 L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
+ +.+.+..|++++.+-|||+|||.
T Consensus 163 ~-d~~~v~~aaRlaaelGADIiK~~ 186 (265)
T COG1830 163 R-DADLVGYAARLAAELGADIIKTK 186 (265)
T ss_pred c-cHHHHHHHHHHHHHhcCCeEeec
Confidence 3 55678889999999999999984
No 18
>PRK02227 hypothetical protein; Provisional
Probab=95.66 E-value=0.055 Score=47.83 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=53.4
Q ss_pred HHHHHHHHHCCCCEEEEe-cChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCC-CHHHHHHHHHHHHHcCCCE
Q psy965 128 LHEIELLAKQKVDEVDIV-IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK-TSENIYCASMTAMFAGSDF 205 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~V-in~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~-t~e~i~~A~~ia~~aGaDF 205 (214)
+.|++.|++.|||=||+= ++.| -+..++.++.+||.+.. ++.+++-.- .|.+. ....+..++.-+..+|+||
T Consensus 10 ~eEA~~Al~~GaDiIDvK~P~~G-aLGA~~p~vir~Iv~~~---~~~~pvSAt--iGD~p~~p~~~~~aa~~~a~~GvDy 83 (238)
T PRK02227 10 LEEALEALAGGADIIDVKNPKEG-SLGANFPWVIREIVAAV---PGRKPVSAT--IGDVPYKPGTISLAALGAAATGADY 83 (238)
T ss_pred HHHHHHHHhcCCCEEEccCCCCC-CCCCCCHHHHHHHHHHh---CCCCCceee--ccCCCCCchHHHHHHHHHHhhCCCE
Confidence 679999999999999987 4444 44567778877776655 332333332 23332 3467888888888999999
Q ss_pred EEcC
Q psy965 206 IKTS 209 (214)
Q Consensus 206 IKTS 209 (214)
||-.
T Consensus 84 VKvG 87 (238)
T PRK02227 84 VKVG 87 (238)
T ss_pred EEEc
Confidence 9954
No 19
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.38 E-value=0.41 Score=42.13 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=61.1
Q ss_pred CCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhc-----CChhHHHHHHHHHHHHhcCCceEEEEE
Q psy965 106 VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLN-----NQWPELFSEVKQMKEKCGEKIHMKTIL 180 (214)
Q Consensus 106 s~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~s-----g~~~~v~~Ei~~v~~a~~~~~~lKvIl 180 (214)
++.++...+.|. ..+.=..-++.+.+.|+|.||+=+....... .+.+.+.+=++++++.++-+..+|+=
T Consensus 97 ~~~pvi~si~g~-----~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~- 170 (289)
T cd02810 97 PGQPLIASVGGS-----SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLS- 170 (289)
T ss_pred CCCeEEEEeccC-----CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeC-
Confidence 356655552232 3344444566777789999888554332221 24566666678888776433445543
Q ss_pred eccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 181 AVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 181 Et~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
. .+ +.++..+.++.+.++|+|||..+.+
T Consensus 171 -~-~~-~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 171 -P-YF-DLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred -C-CC-CHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2 24 5678888999999999999997644
No 20
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.18 E-value=0.2 Score=46.31 Aligned_cols=136 Identities=10% Similarity=-0.000 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHhhccCchhhhccccccCccc-HHHHHHhhhcCCCCCCeEEEecC---CCCCCCCHHHHHHHHHHHHHCC
Q psy965 63 TEAVVETLTLKAIQPLSEELKEKVLRGFVST-VWHGSDNLKTKLVYQPCLSQPAG---FPSGQYLLETRLHEIELLAKQK 138 (214)
Q Consensus 63 T~~~I~~lc~eA~~~f~~~~~~~~~cv~P~~-V~~a~~~L~~~gs~v~vatV~ig---FP~G~~~~~~K~~E~~~Ai~~G 138 (214)
.-+++++++.++..+.. ..+-..|.| ++.+..... +.+.-++-=..| .+.|..+...-.--++.+++.|
T Consensus 47 ~l~~~K~lv~~~l~~~a-----saILld~~yG~~a~~~~~~--~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~G 119 (340)
T PRK12858 47 DLVDFKLAVSEALTPYA-----SAILLDPEYGLPAAKVRDP--NCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAG 119 (340)
T ss_pred hHHHHHHHHHHHHhhCC-----CEEEEccccChhhhcccCC--CCCeEEEecccccccCCCCCCccccccccHHHHHHcC
Confidence 56777888888876422 122335544 443322222 444433310013 3444444444444579999999
Q ss_pred CCEEEEecChhHhhcCCh----hHHHHHHHHHHHHhcCCceEEEEEe--ccCC------------CCHHHHHHHHHHHHH
Q psy965 139 VDEVDIVIQRSLVLNNQW----PELFSEVKQMKEKCGEKIHMKTILA--VGEL------------KTSENIYCASMTAMF 200 (214)
Q Consensus 139 AdEID~Vin~~~l~sg~~----~~v~~Ei~~v~~a~~~~~~lKvIlE--t~~L------------~t~e~i~~A~~ia~~ 200 (214)
||-+=+-++++ +.+. +.-.+.+.++.+.|.. .-+-+++| +--. ..++.|..|++++.+
T Consensus 120 AdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~-~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~ 195 (340)
T PRK12858 120 ADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRA-NDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSK 195 (340)
T ss_pred CCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHH-cCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhh
Confidence 99999999998 2213 2445578888888975 34667777 2211 135788999999995
Q ss_pred --cCCCEEEcC
Q psy965 201 --AGSDFIKTS 209 (214)
Q Consensus 201 --aGaDFIKTS 209 (214)
.|+|.+||.
T Consensus 196 ~elGaDvlKve 206 (340)
T PRK12858 196 PRYGVDVLKVE 206 (340)
T ss_pred hccCCeEEEee
Confidence 999999994
No 21
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=94.56 E-value=0.25 Score=43.67 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=50.3
Q ss_pred HHHHHHHHHCCCCEEEEe-cChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEE-eccCCCCHHHHHHHHHHHHHcCCCE
Q psy965 128 LHEIELLAKQKVDEVDIV-IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL-AVGELKTSENIYCASMTAMFAGSDF 205 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~V-in~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIl-Et~~L~t~e~i~~A~~ia~~aGaDF 205 (214)
+.|++.|++.|||-||+= ++.|+| .....++..||++ .+++.+++-.-+ +.++- ...+..+..-+...|+||
T Consensus 10 ~~EA~~a~~~gaDiID~K~P~~GaL-GA~~~~vi~~i~~---~~~~~~pvSAtiGDlp~~--p~~~~~aa~~~a~~Gvdy 83 (235)
T PF04476_consen 10 VEEAEEALAGGADIIDLKNPAEGAL-GALFPWVIREIVA---AVPGRKPVSATIGDLPMK--PGTASLAALGAAATGVDY 83 (235)
T ss_pred HHHHHHHHhCCCCEEEccCCCCCCC-CCCCHHHHHHHHH---HcCCCCceEEEecCCCCC--chHHHHHHHHHHhcCCCE
Confidence 689999999999999987 444443 3455566556554 454434444433 44432 356777777777889999
Q ss_pred EEcC
Q psy965 206 IKTS 209 (214)
Q Consensus 206 IKTS 209 (214)
||-.
T Consensus 84 vKvG 87 (235)
T PF04476_consen 84 VKVG 87 (235)
T ss_pred EEEe
Confidence 9954
No 22
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=94.24 E-value=1.1 Score=38.08 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=69.9
Q ss_pred CCCCHHHHHHHHHHhhcc-CchhhhccccccCcccHHHHHHhhhcCCCCCCeEEE-ecCCCCCCCCHHHHHHHHHHHHHC
Q psy965 60 GDDTEAVVETLTLKAIQP-LSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQ-PAGFPSGQYLLETRLHEIELLAKQ 137 (214)
Q Consensus 60 ~~~T~~~I~~lc~eA~~~-f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV-~igFP~G~~~~~~K~~E~~~Ai~~ 137 (214)
|-+...++.++.+.+... .. ...+..|.+++.+++. .++++..+ .-+||...-....-..+++.+.+.
T Consensus 22 ~~~~~~~i~~~a~~~~~~G~~-----~~~~~~~~~~~~i~~~-----~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~a 91 (219)
T cd04729 22 PLHSPEIMAAMALAAVQGGAV-----GIRANGVEDIRAIRAR-----VDLPIIGLIKRDYPDSEVYITPTIEEVDALAAA 91 (219)
T ss_pred CcCcHHHHHHHHHHHHHCCCe-----EEEcCCHHHHHHHHHh-----CCCCEEEEEecCCCCCCceeCCCHHHHHHHHHc
Confidence 345566788888777642 11 0012345556655542 46777642 137764221111123599999999
Q ss_pred CCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 138 KVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 138 GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
||+- ++++.+.+...+.+.+.+-++.+++.. .+.++.+.. |.++. ..+.++|+|||+++
T Consensus 92 Gad~--I~~~~~~~~~p~~~~~~~~i~~~~~~g----~~~iiv~v~---t~~ea----~~a~~~G~d~i~~~ 150 (219)
T cd04729 92 GADI--IALDATDRPRPDGETLAELIKRIHEEY----NCLLMADIS---TLEEA----LNAAKLGFDIIGTT 150 (219)
T ss_pred CCCE--EEEeCCCCCCCCCcCHHHHHHHHHHHh----CCeEEEECC---CHHHH----HHHHHcCCCEEEcc
Confidence 9993 566654433222234445455555433 255666443 55554 45677899999863
No 23
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.24 E-value=0.2 Score=43.07 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=53.8
Q ss_pred HHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCc-eEEEEEeccCCCCHHHHHHHHHHHHHcCCCE
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKI-HMKTILAVGELKTSENIYCASMTAMFAGSDF 205 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~-~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDF 205 (214)
-..|+.+|++-|||-||+=-+-.--+..|+-++.+||+++.. +.. .--.+=..+|= +-.+..|+.=+.-+|+||
T Consensus 9 n~eEA~eAieGGAdIiDVKNP~EGSLGANFPWvIr~i~Ev~p---~d~~vSAT~GDvpYK--PGT~slAalGaav~GaDY 83 (235)
T COG1891 9 NREEAIEAIEGGADIIDVKNPAEGSLGANFPWVIREIREVVP---EDQEVSATVGDVPYK--PGTASLAALGAAVAGADY 83 (235)
T ss_pred CHHHHHHHhhCCCceEeccCcccCcccCCChHHHHHHHHhCc---cceeeeeeecCCCCC--CchHHHHHHHhHhhCCce
Confidence 357999999999999998755444566789999988887763 212 22233333433 234666777777899999
Q ss_pred EEcC
Q psy965 206 IKTS 209 (214)
Q Consensus 206 IKTS 209 (214)
||-.
T Consensus 84 iKVG 87 (235)
T COG1891 84 IKVG 87 (235)
T ss_pred EEEe
Confidence 9953
No 24
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=93.78 E-value=2.7 Score=37.28 Aligned_cols=136 Identities=8% Similarity=-0.032 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHHhhc-cCchhhhccccccCcccHHHHH---HhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHH
Q psy965 61 DDTEAVVETLTLKAIQ-PLSEELKEKVLRGFVSTVWHGS---DNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAK 136 (214)
Q Consensus 61 ~~T~~~I~~lc~eA~~-~f~~~~~~~~~cv~P~~V~~a~---~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~ 136 (214)
..|.++..++++.-.+ .+. ..-+.+|...+.-. +.+...+...++.+. . -.....++.|++
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~-----~IEvG~P~~~~~~~~~~~~l~~~~~~~~v~~~------~----r~~~~di~~a~~ 82 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVD-----YIELTSPAASPQSRADCEAIAKLGLKAKILTH------I----RCHMDDARIAVE 82 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCC-----EEEEECCCCCHHHHHHHHHHHhCCCCCcEEEE------e----cCCHHHHHHHHH
Confidence 3566666666665443 222 11245666665433 333322223344333 1 234457999999
Q ss_pred CCCCEEEEecChhH-----hhcCChhHHHHHHHHHHHHhcC-CceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE--Ec
Q psy965 137 QKVDEVDIVIQRSL-----VLNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMFAGSDFI--KT 208 (214)
Q Consensus 137 ~GAdEID~Vin~~~-----l~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI--KT 208 (214)
.|++.|.+++..+- -.....++..+++..+.+.+.. +..+-+-+|...-.+.+.+.+.++.+.++|+|=| +-
T Consensus 83 ~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (262)
T cd07948 83 TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIAD 162 (262)
T ss_pred cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 99999999987653 2345667888888888777653 3678888888877677889999999999999965 44
Q ss_pred CCC
Q psy965 209 SGS 211 (214)
Q Consensus 209 STG 211 (214)
++|
T Consensus 163 t~G 165 (262)
T cd07948 163 TVG 165 (262)
T ss_pred cCC
Confidence 444
No 25
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=93.07 E-value=0.85 Score=41.82 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=56.5
Q ss_pred HHHHHHHCCCCEEEEecChhHh----hcC---------------ChhHHHHHHHHHHHHhcCCceEEEEEec-----cCC
Q psy965 130 EIELLAKQKVDEVDIVIQRSLV----LNN---------------QWPELFSEVKQMKEKCGEKIHMKTILAV-----GEL 185 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l----~sg---------------~~~~v~~Ei~~v~~a~~~~~~lKvIlEt-----~~L 185 (214)
-++.|.+.|.|-||+=.--|+| +|. +...+.+=+++|+++++...++++=|-. +-+
T Consensus 142 aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~ 221 (353)
T cd02930 142 CAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGS 221 (353)
T ss_pred HHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCC
Confidence 4566788999999996533332 222 2466667788999999754455543322 124
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 186 KTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
+.++-.+.+....++|+|||-.|.||
T Consensus 222 -~~~e~~~i~~~Le~~G~d~i~vs~g~ 247 (353)
T cd02930 222 -TWEEVVALAKALEAAGADILNTGIGW 247 (353)
T ss_pred -CHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 56777788888889999999999886
No 26
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=92.48 E-value=3.8 Score=35.95 Aligned_cols=149 Identities=15% Similarity=0.061 Sum_probs=93.3
Q ss_pred HHHHHHhhhhhcccCCCCCCCHHHHHHHHHHhhc-cCchhhhccccc-cCcccHHHHHHhhhcCCCCCCeEEEecCCCCC
Q psy965 43 KSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQ-PLSEELKEKVLR-GFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSG 120 (214)
Q Consensus 43 ~~~l~~~~~~ID~TlL~~~~T~~~I~~lc~eA~~-~f~~~~~~~~~c-v~P~~V~~a~~~L~~~gs~v~vatV~igFP~G 120 (214)
.+|.++...+++...|.+......-.+..++-.+ .-+ .++ +.+ -+..|+..-...++ ++.++..- .|
T Consensus 7 ~~~~~~~~~~~~~~~lgg~~~d~~t~~a~~~~~~rgr~-ef~--~~~e~~~~~i~~e~~~~~---~~~~vivn-----v~ 75 (231)
T TIGR00736 7 AEFCRKFKDLFAIVTLGGYNADRATYKASRDIEKRGRK-EFS--FNLEEFNSYIIEQIKKAE---SRALVSVN-----VR 75 (231)
T ss_pred HHHHHhcCcCcCEEEECCccCCHHHHHHHHHHHHcCCc-ccC--cCcccHHHHHHHHHHHHh---hcCCEEEE-----Ee
Confidence 6899999999999999998777776666655442 211 100 112 13356666555554 33343333 24
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEec----------ChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHH
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDIVI----------QRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSEN 190 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~Vi----------n~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~ 190 (214)
..+.+ -..++-.-++.+++-||+=. ..|..+-.+.+.+.+=++++++. +-+..+|+=+.. +.++
T Consensus 76 ~~~~e-e~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~-~~PVsvKiR~~~----~~~~ 149 (231)
T TIGR00736 76 FVDLE-EAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL-NKPIFVKIRGNC----IPLD 149 (231)
T ss_pred cCCHH-HHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC-CCcEEEEeCCCC----Ccch
Confidence 44444 34455555677999999732 23555666888888888888843 323667766543 2234
Q ss_pred HHHHHHHHHHcCCCEEEc
Q psy965 191 IYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 191 i~~A~~ia~~aGaDFIKT 208 (214)
....++.+.++|+|+|.-
T Consensus 150 ~~~~a~~l~~aGad~i~V 167 (231)
T TIGR00736 150 ELIDALNLVDDGFDGIHV 167 (231)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 557788889999999853
No 27
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=92.05 E-value=3.3 Score=37.09 Aligned_cols=88 Identities=13% Similarity=0.018 Sum_probs=54.9
Q ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEe---cCh------hHhhcCChhHHHHHHHHHHHHhcCCceEEEE
Q psy965 109 PCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIV---IQR------SLVLNNQWPELFSEVKQMKEKCGEKIHMKTI 179 (214)
Q Consensus 109 ~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~V---in~------~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvI 179 (214)
.++++ .|. ...+.=..-++.+.+.|||.||+= +|. |..+..+.+.+.+=++++++..+-+..+|+=
T Consensus 102 ~i~si-~G~----~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~ 176 (299)
T cd02940 102 LIASI-MCE----YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLT 176 (299)
T ss_pred EEEEe-cCC----CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECC
Confidence 35555 453 233333334455555699998883 332 2233356777888888888776544678852
Q ss_pred EeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 180 LAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 180 lEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
. +.+++...++.+.++|+|+|-
T Consensus 177 ---~---~~~~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 177 ---P---NITDIREIARAAKEGGADGVS 198 (299)
T ss_pred ---C---CchhHHHHHHHHHHcCCCEEE
Confidence 2 234566778888999999985
No 28
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=91.46 E-value=3.7 Score=34.53 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=63.7
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecC----------hhHhhcCChhHHHHHHHHHHHHhcCCc
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ----------RSLVLNNQWPELFSEVKQMKEKCGEKI 174 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin----------~~~l~sg~~~~v~~Ei~~v~~a~~~~~ 174 (214)
..++++...+ + |.. .+.=..-++.+.+.|+|.||+=+- +|.-+.++.+.+.+-++++++.++.+.
T Consensus 52 ~~~~p~~~qi-~---g~~-~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v 126 (231)
T cd02801 52 PEERPLIVQL-G---GSD-PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPV 126 (231)
T ss_pred ccCCCEEEEE-c---CCC-HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCE
Confidence 4567777663 3 333 344455677777889999997321 344455688999999999999887324
Q ss_pred eEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 175 HMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 175 ~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
.+|+ -.+.- ..++....++.+.++|+|||.
T Consensus 127 ~vk~--r~~~~-~~~~~~~~~~~l~~~Gvd~i~ 156 (231)
T cd02801 127 TVKI--RLGWD-DEEETLELAKALEDAGASALT 156 (231)
T ss_pred EEEE--eeccC-CchHHHHHHHHHHHhCCCEEE
Confidence 5554 33332 224677788888899999995
No 29
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=91.41 E-value=1.7 Score=39.79 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=56.7
Q ss_pred HHHHHHHCCCCEEEEecChhHh----hc---------------CChhHHHHHHHHHHHHhcCCceEEEEEeccC-----C
Q psy965 130 EIELLAKQKVDEVDIVIQRSLV----LN---------------NQWPELFSEVKQMKEKCGEKIHMKTILAVGE-----L 185 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l----~s---------------g~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~-----L 185 (214)
-|+.|.+.|.|.||+=.--|++ +| ++...+.+=+++|+++++...++|+=|-..+ +
T Consensus 146 AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~ 225 (343)
T cd04734 146 AARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGL 225 (343)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCC
Confidence 3567788999999987644544 22 2335556667888888875456666554333 3
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEEcCCCC
Q psy965 186 KTSENIYCASMTAMFAG-SDFIKTSGSI 212 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aG-aDFIKTSTGf 212 (214)
+.++....++...++| +|||-.|.|.
T Consensus 226 -~~~e~~~~~~~l~~~G~vd~i~vs~g~ 252 (343)
T cd04734 226 -SPDEALEIAARLAAEGLIDYVNVSAGS 252 (343)
T ss_pred -CHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 5567778888888898 8999988773
No 30
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=91.35 E-value=11 Score=34.72 Aligned_cols=131 Identities=14% Similarity=0.008 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHhhc-cCchhhhccccccCcccHHH---HHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHH
Q psy965 61 DDTEAVVETLTLKAIQ-PLSEELKEKVLRGFVSTVWH---GSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAK 136 (214)
Q Consensus 61 ~~T~~~I~~lc~eA~~-~f~~~~~~~~~cv~P~~V~~---a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~ 136 (214)
..|.++..++++.-.+ .+. ..-+.+|..-+. +.+.+.+.+.+.++++. +-| ....++.|++
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~-----~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~--~r~--------~~~di~~a~~ 83 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVD-----ELEVGIPAMGEEERAVIRAIVALGLPARLMAW--CRA--------RDADIEAAAR 83 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCC-----EEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEE--cCC--------CHHHHHHHHc
Confidence 4666776666665443 222 112446654432 23333322344555554 222 2557889999
Q ss_pred CCCCEEEEecChhHh-----hcCChhHHHHHHHHHHHHhcC-CceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 137 QKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 137 ~GAdEID~Vin~~~l-----~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
.|++.|-+++..+-. +....++..+.+....+.+.. +..+-+=.|.+.-.+.+.+.+.++.+.++|+|.|
T Consensus 84 ~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i 159 (365)
T TIGR02660 84 CGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRF 159 (365)
T ss_pred CCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEE
Confidence 999999999987642 233456666666666665543 2456666777666678889999999999999986
No 31
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=91.08 E-value=2.4 Score=37.99 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=62.3
Q ss_pred HHHHHHHCCCCEEEEecChhHh-----hcCChhHHHHHHHHHHHHhcC-CceEEEEEec---cCCCCHHHHHHHHHHHHH
Q psy965 130 EIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILAV---GELKTSENIYCASMTAMF 200 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l-----~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt---~~L~t~e~i~~A~~ia~~ 200 (214)
.++.|++.|+++|.+++..+.. .....++..+++..+.+.++. +..+-+-+|+ ++-.+.+.+.+.++.+.+
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSD 158 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 6888999999999999955432 235678888899998887764 3567777775 222367889999999999
Q ss_pred cCCCEE--EcCCCC
Q psy965 201 AGSDFI--KTSGSI 212 (214)
Q Consensus 201 aGaDFI--KTSTGf 212 (214)
+|+|-| +=++|.
T Consensus 159 ~G~~~i~l~DT~G~ 172 (280)
T cd07945 159 LPIKRIMLPDTLGI 172 (280)
T ss_pred cCCCEEEecCCCCC
Confidence 999976 444553
No 32
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=90.93 E-value=6.7 Score=36.47 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=61.1
Q ss_pred HHHHHHHHHHCCCCEEEEecChhHh-----hcCChhHHHHHHHHHHHHhcC-CceEEEEEeccCCCCHHHHHHHHHHHHH
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMF 200 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~l-----~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt~~L~t~e~i~~A~~ia~~ 200 (214)
+...++.|++.|++.|.+++..+.+ +....++..+.+...++.+.. +..+-+-.|.+.-.+.+.+.+.++.+.+
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~ 156 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEE 156 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHh
Confidence 4556889999999999999988764 345567777777777776643 2445555666666678899999999999
Q ss_pred cCCCEE
Q psy965 201 AGSDFI 206 (214)
Q Consensus 201 aGaDFI 206 (214)
+|+|-|
T Consensus 157 ~Ga~~I 162 (378)
T PRK11858 157 AGADRV 162 (378)
T ss_pred CCCCEE
Confidence 999976
No 33
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.90 E-value=9.4 Score=32.63 Aligned_cols=136 Identities=14% Similarity=0.009 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHhhc-cCchhhhccccccCc------ccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHH
Q psy965 60 GDDTEAVVETLTLKAIQ-PLSEELKEKVLRGFV------STVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIE 132 (214)
Q Consensus 60 ~~~T~~~I~~lc~eA~~-~f~~~~~~~~~cv~P------~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~ 132 (214)
...|.++..++++...+ .+... .......| .......+.+.+.+.++++++.+ +.| ...++
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~I--Evg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~---~~~-------~~~i~ 81 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSI--EVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALV---RNR-------EKGIE 81 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEE--EeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEc---cCc-------hhhHH
Confidence 34578888888777654 22200 00001122 22233334444323356766652 333 66899
Q ss_pred HHHHCCCCEEEEecChhHhh-----cCChhHHHHHHHHHHHHhc-CCceEEEEEeccCC--CCHHHHHHHHHHHHHcCCC
Q psy965 133 LLAKQKVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCG-EKIHMKTILAVGEL--KTSENIYCASMTAMFAGSD 204 (214)
Q Consensus 133 ~Ai~~GAdEID~Vin~~~l~-----sg~~~~v~~Ei~~v~~a~~-~~~~lKvIlEt~~L--~t~e~i~~A~~ia~~aGaD 204 (214)
.+.+.|++.|-+.+..+-.. ...-+...+++....+.+. .+..+-+-+|+..- .+.+.+.+..+.+.++|+|
T Consensus 82 ~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 161 (265)
T cd03174 82 RALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGAD 161 (265)
T ss_pred HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999998766211 0112223344433333332 23567777765553 5889999999999999999
Q ss_pred EEE
Q psy965 205 FIK 207 (214)
Q Consensus 205 FIK 207 (214)
.|-
T Consensus 162 ~i~ 164 (265)
T cd03174 162 EIS 164 (265)
T ss_pred EEE
Confidence 874
No 34
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=90.86 E-value=5.2 Score=36.37 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=45.2
Q ss_pred CCCCEEEEec---Ch-hHhhcCChhHHHHHHHHHHHHhc-----CCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 137 QKVDEVDIVI---QR-SLVLNNQWPELFSEVKQMKEKCG-----EKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 137 ~GAdEID~Vi---n~-~~l~sg~~~~v~~Ei~~v~~a~~-----~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
.+||-||+=+ |. +.-...+.+.+.+=++++++.+. -+..+|+= ..+ +.+++...++.+.++|+|+|.
T Consensus 159 ~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~---~~~-~~~~~~~ia~~l~~aGad~I~ 234 (327)
T cd04738 159 PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIA---PDL-SDEELEDIADVALEHGVDGII 234 (327)
T ss_pred hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeC---CCC-CHHHHHHHHHHHHHcCCcEEE
Confidence 3588777633 22 11112345566666688887774 23677773 445 567888999999999999998
Q ss_pred cC
Q psy965 208 TS 209 (214)
Q Consensus 208 TS 209 (214)
.+
T Consensus 235 ~~ 236 (327)
T cd04738 235 AT 236 (327)
T ss_pred EE
Confidence 43
No 35
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=90.79 E-value=2 Score=39.24 Aligned_cols=93 Identities=19% Similarity=0.090 Sum_probs=66.6
Q ss_pred CCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEec----------ChhHhhcCChhHHHHHHHHHHHHhc-CCce
Q psy965 107 YQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVI----------QRSLVLNNQWPELFSEVKQMKEKCG-EKIH 175 (214)
Q Consensus 107 ~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vi----------n~~~l~sg~~~~v~~Ei~~v~~a~~-~~~~ 175 (214)
..+++.-+ .|..| +.=.+-++.+.+.|+++||+=. ..|+-+-.+++.+++=+++++++.+ -+..
T Consensus 66 e~p~~vQl----~gsdp-~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVT 140 (323)
T COG0042 66 ERPVAVQL----GGSDP-ELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVT 140 (323)
T ss_pred CCCEEEEe----cCCCH-HHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeE
Confidence 34555553 46666 5555567778889999999731 2367778899999999999999996 2367
Q ss_pred EEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 176 MKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 176 lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
+|+=+-..... -+.....+++.++|++.+
T Consensus 141 VKiRlG~d~~~--~~~~~ia~~~~~~g~~~l 169 (323)
T COG0042 141 VKIRLGWDDDD--ILALEIARILEDAGADAL 169 (323)
T ss_pred EEEecccCccc--ccHHHHHHHHHhcCCCEE
Confidence 77766555441 134456888999999987
No 36
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=90.70 E-value=1.9 Score=41.80 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=48.9
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
...++..++.|++-| ++|.. .|+-....+-|+.+++..++ +++|. |-..|.+. ++.++++||||||
T Consensus 243 ~~~~~~l~~ag~d~i--~id~a---~G~s~~~~~~i~~ik~~~~~---~~v~a--G~V~t~~~----a~~~~~aGad~I~ 308 (495)
T PTZ00314 243 IERAAALIEAGVDVL--VVDSS---QGNSIYQIDMIKKLKSNYPH---VDIIA--GNVVTADQ----AKNLIDAGADGLR 308 (495)
T ss_pred HHHHHHHHHCCCCEE--EEecC---CCCchHHHHHHHHHHhhCCC---ceEEE--CCcCCHHH----HHHHHHcCCCEEE
Confidence 678889999999984 44553 67777777888888876543 66666 43436444 4567789999999
Q ss_pred cC
Q psy965 208 TS 209 (214)
Q Consensus 208 TS 209 (214)
.+
T Consensus 309 vg 310 (495)
T PTZ00314 309 IG 310 (495)
T ss_pred EC
Confidence 65
No 37
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=90.40 E-value=4.8 Score=35.78 Aligned_cols=102 Identities=21% Similarity=0.164 Sum_probs=62.4
Q ss_pred cHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCC-CCEEEEec---Ch---hHhhcCChhHHHHHHHH
Q psy965 93 TVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQK-VDEVDIVI---QR---SLVLNNQWPELFSEVKQ 165 (214)
Q Consensus 93 ~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~G-AdEID~Vi---n~---~~l~sg~~~~v~~Ei~~ 165 (214)
|+...++.++ ..+.++..-+.| .+ .+.=..-++.+.+.| +|-||+=+ |. |....++.+.+.+=+++
T Consensus 79 ~~~~~~~~~~--~~~~p~i~si~g----~~-~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~ 151 (301)
T PRK07259 79 FIEEELPWLE--EFDTPIIANVAG----ST-EEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKA 151 (301)
T ss_pred HHHHHHHHHh--ccCCcEEEEecc----CC-HHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHH
Confidence 4555444433 234554444233 33 333344555666678 99999832 32 34555677888888889
Q ss_pred HHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 166 MKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 166 v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+++++.-+..+|+-. +.+++...++.+.++|+|+|-
T Consensus 152 vr~~~~~pv~vKl~~------~~~~~~~~a~~l~~~G~d~i~ 187 (301)
T PRK07259 152 VKEVVKVPVIVKLTP------NVTDIVEIAKAAEEAGADGLS 187 (301)
T ss_pred HHHhcCCCEEEEcCC------CchhHHHHHHHHHHcCCCEEE
Confidence 988874335677642 334666778889999999873
No 38
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=90.34 E-value=1.2 Score=37.09 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=41.9
Q ss_pred HHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCC-HHHHHHHHHHHHHcCCCEEEc
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKT-SENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t-~e~i~~A~~ia~~aGaDFIKT 208 (214)
+++.+.+.|||-|=+- .. .+. ..+.++.+.|.. .-++++++..--.+ .+++ +.+.+.|+|||+.
T Consensus 68 ~~~~~~~~Gad~i~vh--~~---~~~-----~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~----~~~~~~g~d~v~~ 132 (206)
T TIGR03128 68 EAEQAFAAGADIVTVL--GV---ADD-----ATIKGAVKAAKK-HGKEVQVDLINVKDKVKRA----KELKELGADYIGV 132 (206)
T ss_pred HHHHHHHcCCCEEEEe--cc---CCH-----HHHHHHHHHHHH-cCCEEEEEecCCCChHHHH----HHHHHcCCCEEEE
Confidence 7999999999975432 21 111 233444444544 45899998522223 2333 3346679999999
Q ss_pred CCCCC
Q psy965 209 SGSIQ 213 (214)
Q Consensus 209 STGf~ 213 (214)
.+||.
T Consensus 133 ~pg~~ 137 (206)
T TIGR03128 133 HTGLD 137 (206)
T ss_pred cCCcC
Confidence 88863
No 39
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=89.40 E-value=9.6 Score=33.68 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEecCh------hHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHH
Q psy965 124 LETRLHEIELLAKQKVDEVDIVIQR------SLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMT 197 (214)
Q Consensus 124 ~~~K~~E~~~Ai~~GAdEID~Vin~------~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~i 197 (214)
.+.=..-++.+.+.|+|-||+=+.. |.-..++.+.+.+=+++++++++-+..+|+ +... ++....++.
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl---~~~~---~~~~~~a~~ 174 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKL---TPNV---TDIVEIARA 174 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEe---CCCc---hhHHHHHHH
Confidence 3444455666667799998884332 233335667777778888887653466774 2322 456677788
Q ss_pred HHHcCCCEEEc
Q psy965 198 AMFAGSDFIKT 208 (214)
Q Consensus 198 a~~aGaDFIKT 208 (214)
+.++|+|+|.-
T Consensus 175 ~~~~G~d~i~~ 185 (296)
T cd04740 175 AEEAGADGLTL 185 (296)
T ss_pred HHHcCCCEEEE
Confidence 89999999864
No 40
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=89.27 E-value=3.2 Score=37.65 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=54.9
Q ss_pred HHHHHHHHHCCCCEEEEecChhH-------------------hhcCChhHHHHHHHHHHHHhcCC--ceEEEEEe---cc
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSL-------------------VLNNQWPELFSEVKQMKEKCGEK--IHMKTILA---VG 183 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~-------------------l~sg~~~~v~~Ei~~v~~a~~~~--~~lKvIlE---t~ 183 (214)
+..++.|.+.|.|-|++=.--|+ -+.++.+.+.+=+++|++++|+. .-+|+=.+ .+
T Consensus 157 ~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~ 236 (336)
T cd02932 157 VAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEG 236 (336)
T ss_pred HHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCC
Confidence 34567788899999998542222 22334566778889999999753 33443321 12
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 184 ELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 184 ~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
-+ +.++..+.+....+.|+|||--|.|
T Consensus 237 g~-~~~e~~~ia~~Le~~gvd~iev~~g 263 (336)
T cd02932 237 GW-DLEDSVELAKALKELGVDLIDVSSG 263 (336)
T ss_pred CC-CHHHHHHHHHHHHHcCCCEEEECCC
Confidence 23 4666777777778899999997766
No 41
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=89.21 E-value=3.5 Score=38.32 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=59.7
Q ss_pred HHHHHHHHHHCCCCEEEEecChhHhh-----cCChhHHHHHHHHHHHHhcC-CceEEEEEec-------cCCCCHHHHHH
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCGE-KIHMKTILAV-------GELKTSENIYC 193 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~l~-----sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt-------~~L~t~e~i~~ 193 (214)
....++.|++.|+++|.+++..+-.. ....+++.+++..+++.++. +..+.+-+.+ +.. +.+.+.+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~-~~~~l~~ 201 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPV-PPSKVAY 201 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCC-CHHHHHH
Confidence 67899999999999999998776432 34568888888888888864 2344433543 323 6788889
Q ss_pred HHHHHHHcCCCEE
Q psy965 194 ASMTAMFAGSDFI 206 (214)
Q Consensus 194 A~~ia~~aGaDFI 206 (214)
.++.+.++|+|-|
T Consensus 202 ~~~~~~~~Gad~I 214 (347)
T PLN02746 202 VAKELYDMGCYEI 214 (347)
T ss_pred HHHHHHHcCCCEE
Confidence 9999999999986
No 42
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=89.20 E-value=5.5 Score=36.36 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEec--------C--hhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVI--------Q--RSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSE 189 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vi--------n--~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e 189 (214)
|..+ +.=..-++.+.+.|+|.||+=+ + .|..+..+.+.+.+-+++++++++-+..+|+=+-.....+.+
T Consensus 63 g~~p-~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~ 141 (318)
T TIGR00742 63 GSDP-NDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYE 141 (318)
T ss_pred cCCH-HHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHH
Confidence 4444 3333445556668999999632 1 366667799999999999999886457788876443332446
Q ss_pred HHHHHHHHHHHcCCCEEE
Q psy965 190 NIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 190 ~i~~A~~ia~~aGaDFIK 207 (214)
+..+.++.+.++|+|+|-
T Consensus 142 ~~~~~~~~l~~~G~~~it 159 (318)
T TIGR00742 142 FLCDFVEIVSGKGCQNFI 159 (318)
T ss_pred HHHHHHHHHHHcCCCEEE
Confidence 677888899999999984
No 43
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=89.05 E-value=6.2 Score=35.88 Aligned_cols=95 Identities=18% Similarity=0.108 Sum_probs=62.9
Q ss_pred CCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecC--------h--hHhhcCChhHHHHHHHHHHHHhcC--Cce
Q psy965 108 QPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ--------R--SLVLNNQWPELFSEVKQMKEKCGE--KIH 175 (214)
Q Consensus 108 v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin--------~--~~l~sg~~~~v~~Ei~~v~~a~~~--~~~ 175 (214)
.+++.-+ +|.++ +.=..-++.+.+.|+|+||+=.- . |.-+.++.+.+.+=+++++++++. +..
T Consensus 63 ~p~~vQl----~g~~p-~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVs 137 (312)
T PRK10550 63 TLVRIQL----LGQYP-QWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVT 137 (312)
T ss_pred CcEEEEe----ccCCH-HHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceE
Confidence 4555442 35555 43444566778899999997322 1 334556888888889999998852 355
Q ss_pred EEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCC
Q psy965 176 MKTILAVGELKTSENIYCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 176 lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTST 210 (214)
+|+=+ |.- +.++....++++.++|+|+|--+.
T Consensus 138 vKiR~--g~~-~~~~~~~~a~~l~~~Gvd~i~Vh~ 169 (312)
T PRK10550 138 VKVRL--GWD-SGERKFEIADAVQQAGATELVVHG 169 (312)
T ss_pred EEEEC--CCC-CchHHHHHHHHHHhcCCCEEEECC
Confidence 66544 432 334566888999999999997654
No 44
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=88.98 E-value=1.3 Score=37.83 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=53.3
Q ss_pred CCCCCCCC--HHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcC----CceEEEEEeccCCCCHH
Q psy965 116 GFPSGQYL--LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE----KIHMKTILAVGELKTSE 189 (214)
Q Consensus 116 gFP~G~~~--~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~----~~~lKvIlEt~~L~t~e 189 (214)
.|+.|... .+.-+.++++.++.||+-||+=..-..=-. .+-...+|+..++..... ...+-+-|.|..- +
T Consensus 8 Sf~~g~~~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~-~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~---~ 83 (210)
T PF00809_consen 8 SFSDGGRKFSEDEAVKRAREQVEAGADIIDIGAESTRPGA-TPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNP---E 83 (210)
T ss_dssp TTTTTTCHHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTS-SSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSH---H
T ss_pred CCcccCcccCHHHHHHHHHHHHHhcCCEEEecccccCCCC-CcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCH---H
Confidence 67777544 344566799999999999998643321111 222334555554443321 0135667777743 3
Q ss_pred HHHHHHHHHHHcCCCEEEcCCCCC
Q psy965 190 NIYCASMTAMFAGSDFIKTSGSIQ 213 (214)
Q Consensus 190 ~i~~A~~ia~~aGaDFIKTSTGf~ 213 (214)
+ .+.|.++|+++|--++|+.
T Consensus 84 -v---~~~aL~~g~~~ind~~~~~ 103 (210)
T PF00809_consen 84 -V---AEAALKAGADIINDISGFE 103 (210)
T ss_dssp -H---HHHHHHHTSSEEEETTTTS
T ss_pred -H---HHHHHHcCcceEEeccccc
Confidence 2 3345566999999999975
No 45
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.82 E-value=3.7 Score=37.75 Aligned_cols=82 Identities=13% Similarity=0.077 Sum_probs=54.4
Q ss_pred HHHHHHHCCCCEEEEecChhHhh-------------------cCChhHHHHHHHHHHHHhc----CCceEEEEEecc---
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVL-------------------NNQWPELFSEVKQMKEKCG----EKIHMKTILAVG--- 183 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~-------------------sg~~~~v~~Ei~~v~~a~~----~~~~lKvIlEt~--- 183 (214)
-++.|.+.|.|-||+=.--|+|+ .++...+.+=+.+|+++++ ...++++=+...
T Consensus 149 aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~ 228 (353)
T cd04735 149 ATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPE 228 (353)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccccc
Confidence 35678889999999865444333 1222345566678888887 334555544321
Q ss_pred --CCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 184 --ELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 184 --~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
-+ +.++....+....++|+|||-.|.|.
T Consensus 229 ~~g~-~~ee~~~i~~~L~~~GvD~I~Vs~g~ 258 (353)
T cd04735 229 EPGI-RMEDTLALVDKLADKGLDYLHISLWD 258 (353)
T ss_pred CCCC-CHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 23 55777788888899999999988763
No 46
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.72 E-value=3.8 Score=37.24 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=54.3
Q ss_pred HHHHHHHCCCCEEEEecChhHhh-------------------cCChhHHHHHHHHHHHHhcCCc--eEEEEE----eccC
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVL-------------------NNQWPELFSEVKQMKEKCGEKI--HMKTIL----AVGE 184 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~-------------------sg~~~~v~~Ei~~v~~a~~~~~--~lKvIl----Et~~ 184 (214)
-++.|.+.|.|-|++=.--|+|+ .++...+.+=|++|++++++.. .+|+=- +.|
T Consensus 154 aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g- 232 (338)
T cd04733 154 AARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGG- 232 (338)
T ss_pred HHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCC-
Confidence 45678889999999854443332 2334566677889999997532 333311 122
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 185 LKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 185 L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
+ +.++-...+....++|+|||-.|.|.
T Consensus 233 ~-~~eea~~ia~~Le~~Gvd~iev~~g~ 259 (338)
T cd04733 233 F-TEEDALEVVEALEEAGVDLVELSGGT 259 (338)
T ss_pred C-CHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 4 66777788888889999999977663
No 47
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=88.41 E-value=3.2 Score=37.29 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=60.4
Q ss_pred HHHHHHHHHHCCCCEEEEecChhHh-----hcCChhHHHHHHHHHHHHhcCCceEEEE--Eec------cCCCCHHHHHH
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGEKIHMKTI--LAV------GELKTSENIYC 193 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~l-----~sg~~~~v~~Ei~~v~~a~~~~~~lKvI--lEt------~~L~t~e~i~~ 193 (214)
+...++.|++.|.++|.+++..+.. +....++..+++..+++.++. .-++|. +.+ .--.+.+.+.+
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~-~g~~v~~~i~~~~~~~~~~~~~~~~~~~ 159 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQ-AGVRVRGYVSCVLGCPYEGEVPPEAVAD 159 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCEEEEEEEEEecCCCCCCCCHHHHHH
Confidence 5778899999999999999888654 233566777788888887754 223443 322 11226788999
Q ss_pred HHHHHHHcCCCEE--EcCCCC
Q psy965 194 ASMTAMFAGSDFI--KTSGSI 212 (214)
Q Consensus 194 A~~ia~~aGaDFI--KTSTGf 212 (214)
.++.+.++|+|-| +-++|.
T Consensus 160 ~~~~~~~~G~d~i~l~DT~G~ 180 (287)
T PRK05692 160 VAERLFALGCYEISLGDTIGV 180 (287)
T ss_pred HHHHHHHcCCcEEEeccccCc
Confidence 9999999999976 445553
No 48
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=88.22 E-value=4.3 Score=36.93 Aligned_cols=85 Identities=13% Similarity=0.028 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEecC----------hhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCH
Q psy965 119 SGQYLLETRLHEIELLAKQKVDEVDIVIQ----------RSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTS 188 (214)
Q Consensus 119 ~G~~~~~~K~~E~~~Ai~~GAdEID~Vin----------~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~ 188 (214)
+|.++-+. +.-++.+.+.|++.||+=+- .|..+-.+.+.+++=+++++++++-+..+|+- .|.-.+.
T Consensus 72 ~g~~~~~~-~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR--~G~~~~~ 148 (321)
T PRK10415 72 AGSDPKEM-ADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIR--TGWAPEH 148 (321)
T ss_pred eCCCHHHH-HHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEE--ccccCCc
Confidence 56666443 33455567789999996322 24445567888888889998887533445554 5544343
Q ss_pred HHHHHHHHHHHHcCCCEE
Q psy965 189 ENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 189 e~i~~A~~ia~~aGaDFI 206 (214)
++....++.+.++|+|+|
T Consensus 149 ~~~~~~a~~le~~G~d~i 166 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQAL 166 (321)
T ss_pred chHHHHHHHHHHhCCCEE
Confidence 456677788899999999
No 49
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=88.07 E-value=9.3 Score=33.89 Aligned_cols=96 Identities=16% Similarity=0.037 Sum_probs=64.9
Q ss_pred CCeEEEecCC-CCCCCCHHHHHHHHHHHHHC-CCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC
Q psy965 108 QPCLSQPAGF-PSGQYLLETRLHEIELLAKQ-KVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 185 (214)
Q Consensus 108 v~vatV~igF-P~G~~~~~~K~~E~~~Ai~~-GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L 185 (214)
+-.+.+ +=| +.|.-..+.=..-+++.++. |++-|=+-=.-|-+-+=..++-.+=++.+++.+++ .+.||.-++..
T Consensus 4 v~~a~~-TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~--~~~viagv~~~ 80 (288)
T cd00954 4 LIAALL-TPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG--KVTLIAHVGSL 80 (288)
T ss_pred eeeceE-CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC--CCeEEeccCCC
Confidence 333444 566 67888888888899999999 99884333233322222233333334455566654 58999999988
Q ss_pred CCHHHHHHHHHHHHHcCCCEEE
Q psy965 186 KTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aGaDFIK 207 (214)
++ ++..+.++.|.++|||.|=
T Consensus 81 ~~-~~ai~~a~~a~~~Gad~v~ 101 (288)
T cd00954 81 NL-KESQELAKHAEELGYDAIS 101 (288)
T ss_pred CH-HHHHHHHHHHHHcCCCEEE
Confidence 44 6777889999999999875
No 50
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=87.17 E-value=6.6 Score=34.71 Aligned_cols=85 Identities=15% Similarity=0.134 Sum_probs=50.6
Q ss_pred CCCCC--CCHHHHHHHHHHHHHCCCCEEEEecChhHhhc--C-ChhHHHHH---HHHHHHHhcCCceEEEEEeccCCCCH
Q psy965 117 FPSGQ--YLLETRLHEIELLAKQKVDEVDIVIQRSLVLN--N-QWPELFSE---VKQMKEKCGEKIHMKTILAVGELKTS 188 (214)
Q Consensus 117 FP~G~--~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~s--g-~~~~v~~E---i~~v~~a~~~~~~lKvIlEt~~L~t~ 188 (214)
|=-|. ...+.=+..+++.++.||+-||+= ..-+ | +.-...+| +..++++......+.+-+.|..-
T Consensus 13 F~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG----~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~--- 85 (257)
T TIGR01496 13 FSDGGRFLSVDKAVAHAERMLEEGADIIDVG----GESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRA--- 85 (257)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCH---
Confidence 44444 345777788999999999999992 1111 0 11122334 44444444331245667777633
Q ss_pred HHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 189 ENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 189 e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
+- .+.|.++|+|.|..-||+
T Consensus 86 ~v----i~~al~~G~~iINsis~~ 105 (257)
T TIGR01496 86 EV----ARAALEAGADIINDVSGG 105 (257)
T ss_pred HH----HHHHHHcCCCEEEECCCC
Confidence 33 445566699999988886
No 51
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=87.04 E-value=8.8 Score=34.15 Aligned_cols=99 Identities=14% Similarity=0.032 Sum_probs=64.0
Q ss_pred CCCCCeEEEecCC-CCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEecc
Q psy965 105 LVYQPCLSQPAGF-PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVG 183 (214)
Q Consensus 105 gs~v~vatV~igF-P~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~ 183 (214)
|+++-.+.+ +=| +.|.-..+.=..-+++.++.|++-|=+-=..|-.-.=..++-.+=++.+++.+++ .+.||.-++
T Consensus 1 ~~Gi~~a~v-TPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~--~~pvi~gv~ 77 (289)
T cd00951 1 GSGLLSFPV-THFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAG--RVPVLAGAG 77 (289)
T ss_pred CCCeEEEee-cCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC--CCCEEEecC
Confidence 345555666 677 5688788888888999999999985433333322222223323333444555543 477899888
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 184 ELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 184 ~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
. ++ ++..+.++.|.++|+|.+=-
T Consensus 78 ~-~t-~~~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 78 Y-GT-ATAIAYAQAAEKAGADGILL 100 (289)
T ss_pred C-CH-HHHHHHHHHHHHhCCCEEEE
Confidence 5 56 55567889999999998743
No 52
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=87.03 E-value=3.8 Score=38.07 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 199 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~ 199 (214)
.....+.-+++|+.|.+.||...-||--..- +.-+.+++.+-++.|++. ..+++.+-.|.| +.|+..+ ..
T Consensus 82 ~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~----~~le~c~slG~l-~~eq~~~----L~ 151 (335)
T COG0502 82 KLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEE----LGLEVCASLGML-TEEQAEK----LA 151 (335)
T ss_pred hcCCHHHHHHHHHHHHHcCCceEEEEEeccC-CCccHHHHHHHHHHHHHh----cCcHHhhccCCC-CHHHHHH----HH
Confidence 3456788899999999999999999866544 444555555555555543 348999999988 7676654 45
Q ss_pred HcCCCEEEc
Q psy965 200 FAGSDFIKT 208 (214)
Q Consensus 200 ~aGaDFIKT 208 (214)
+||+|++..
T Consensus 152 ~aGvd~ynh 160 (335)
T COG0502 152 DAGVDRYNH 160 (335)
T ss_pred HcChhheec
Confidence 789998754
No 53
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.83 E-value=6.4 Score=36.63 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=56.3
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhc-------------------CChhHHHHHHHHHHHHhcCC--ceEEEEEe----c-
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLN-------------------NQWPELFSEVKQMKEKCGEK--IHMKTILA----V- 182 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~s-------------------g~~~~v~~Ei~~v~~a~~~~--~~lKvIlE----t- 182 (214)
.-++.|.+.|.|-|++=.--|+|++ ++...+.+=|.+|+++|++. ..+|+--+ .
T Consensus 148 ~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~ 227 (361)
T cd04747 148 RAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYT 227 (361)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccc
Confidence 3467788899999999876665541 12234556678888888752 44555421 1
Q ss_pred --cCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 183 --GELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 183 --~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
+-+ +.++....+..+.++|+|||-.|+|
T Consensus 228 ~~~g~-~~~e~~~~~~~l~~~gvd~i~vs~g 257 (361)
T cd04747 228 ARLAD-TPDELEALLAPLVDAGVDIFHCSTR 257 (361)
T ss_pred cCCCC-CHHHHHHHHHHHHHcCCCEEEecCC
Confidence 114 6677777888888999999999998
No 54
>PLN02417 dihydrodipicolinate synthase
Probab=86.83 E-value=13 Score=32.93 Aligned_cols=98 Identities=13% Similarity=0.102 Sum_probs=69.0
Q ss_pred CCCeEEEecCC-CCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC
Q psy965 107 YQPCLSQPAGF-PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 185 (214)
Q Consensus 107 ~v~vatV~igF-P~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L 185 (214)
++-.+.+ +=| +.|.-..+.=...+++.++.|++-|=+-=.-|-+-+=..++-.+=++.+++.+++ .++||.-++..
T Consensus 4 Gv~~a~~-TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~--~~pvi~gv~~~ 80 (280)
T PLN02417 4 RLITAIK-TPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG--KIKVIGNTGSN 80 (280)
T ss_pred ceeeeee-CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCC--CCcEEEECCCc
Confidence 4545555 677 6788888888889999999999986544444443333444444445555665554 58999999988
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEc
Q psy965 186 KTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
++ ++..+.++.|.++|+|.|=-
T Consensus 81 ~t-~~~i~~a~~a~~~Gadav~~ 102 (280)
T PLN02417 81 ST-REAIHATEQGFAVGMHAALH 102 (280)
T ss_pred cH-HHHHHHHHHHHHcCCCEEEE
Confidence 55 56668888999999998743
No 55
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=86.75 E-value=9.7 Score=35.40 Aligned_cols=93 Identities=11% Similarity=-0.016 Sum_probs=60.9
Q ss_pred eEEEecCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCH
Q psy965 110 CLSQPAGFPSG-QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTS 188 (214)
Q Consensus 110 vatV~igFP~G-~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~ 188 (214)
++.. .|.|.+ ..+.+.-+.-++.+.+.||++|=+.=-.|. .+...+++-++.+++..+. .-|+.-.=+|.
T Consensus 182 is~~-fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~---a~P~~v~~lv~~l~~~~~~-----~~i~~H~Hnd~ 252 (347)
T PLN02746 182 VSCV-VGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGV---GTPGTVVPMLEAVMAVVPV-----DKLAVHFHDTY 252 (347)
T ss_pred EEee-ecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCC---cCHHHHHHHHHHHHHhCCC-----CeEEEEECCCC
Confidence 3445 688855 445666666688899999999844433343 2467888888888876542 12444444343
Q ss_pred HHHHHHHHHHHHcCCCEEEcCCC
Q psy965 189 ENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 189 e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
..-..-+..|+++|+++|-+|-+
T Consensus 253 GlA~AN~lAA~~aGa~~vd~sv~ 275 (347)
T PLN02746 253 GQALANILVSLQMGISTVDSSVA 275 (347)
T ss_pred ChHHHHHHHHHHhCCCEEEEecc
Confidence 33333456789999999998865
No 56
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=86.62 E-value=2.9 Score=39.85 Aligned_cols=70 Identities=23% Similarity=0.298 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCE
Q psy965 126 TRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF 205 (214)
Q Consensus 126 ~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDF 205 (214)
.-..+++..++.|+|-|-+ |... |+-..+.+-|+.+++..++ +-||. |-..|.++ ++.++++|+||
T Consensus 224 ~~~~r~~~L~~aG~d~I~v--d~a~---g~~~~~~~~i~~i~~~~~~---~~vi~--G~v~t~~~----a~~l~~aGad~ 289 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVI--DSSH---GHSIYVIDSIKEIKKTYPD---LDIIA--GNVATAEQ----AKALIDAGADG 289 (450)
T ss_pred hHHHHHHHHHHhCCCEEEE--ECCC---CcHhHHHHHHHHHHHhCCC---CCEEE--EeCCCHHH----HHHHHHhCCCE
Confidence 3457888999999998544 4432 6667888889999876543 45555 33336544 45677899999
Q ss_pred EEcC
Q psy965 206 IKTS 209 (214)
Q Consensus 206 IKTS 209 (214)
||++
T Consensus 290 i~vg 293 (450)
T TIGR01302 290 LRVG 293 (450)
T ss_pred EEEC
Confidence 9976
No 57
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=86.47 E-value=26 Score=33.80 Aligned_cols=130 Identities=19% Similarity=0.093 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHhhcc----Cchhhhcccccc-CcccHHHHHHhhhcCCCCCCeEEEecCCCCC-CCCHHHHHHHHHHHH
Q psy965 62 DTEAVVETLTLKAIQP----LSEELKEKVLRG-FVSTVWHGSDNLKTKLVYQPCLSQPAGFPSG-QYLLETRLHEIELLA 135 (214)
Q Consensus 62 ~T~~~I~~lc~eA~~~----f~~~~~~~~~cv-~P~~V~~a~~~L~~~gs~v~vatV~igFP~G-~~~~~~K~~E~~~Ai 135 (214)
-..+-|++++++|.++ || .+.-. -|..++.+.+..++.|..+ -.+ +.|-.. .++++.=+.-+++.+
T Consensus 95 yaDDvVe~Fv~ka~~nGidvfR-----iFDAlND~RNl~~ai~a~kk~G~h~--q~~-i~YT~sPvHt~e~yv~~akel~ 166 (472)
T COG5016 95 YADDVVEKFVEKAAENGIDVFR-----IFDALNDVRNLKTAIKAAKKHGAHV--QGT-ISYTTSPVHTLEYYVELAKELL 166 (472)
T ss_pred CchHHHHHHHHHHHhcCCcEEE-----echhccchhHHHHHHHHHHhcCcee--EEE-EEeccCCcccHHHHHHHHHHHH
Confidence 4567789999999863 33 12222 3677788888777655544 333 355422 677788888899999
Q ss_pred HCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHH-HHHHHcCCCEEEcC
Q psy965 136 KQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCAS-MTAMFAGSDFIKTS 209 (214)
Q Consensus 136 ~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~-~ia~~aGaDFIKTS 209 (214)
+.|+|-|=+= |-+-++ .....|+-++++++.++ +.|.+-|-.-+. +..+| ..|.+||+|+|-|+
T Consensus 167 ~~g~DSIciK-DmaGll--tP~~ayelVk~iK~~~~----~pv~lHtH~TsG---~a~m~ylkAvEAGvD~iDTA 231 (472)
T COG5016 167 EMGVDSICIK-DMAGLL--TPYEAYELVKAIKKELP----VPVELHTHATSG---MAEMTYLKAVEAGVDGIDTA 231 (472)
T ss_pred HcCCCEEEee-cccccC--ChHHHHHHHHHHHHhcC----CeeEEecccccc---hHHHHHHHHHHhCcchhhhh
Confidence 9999987443 333333 35677888888888665 566676665532 33444 56789999999885
No 58
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.31 E-value=3.7 Score=36.93 Aligned_cols=67 Identities=24% Similarity=0.158 Sum_probs=40.9
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+.|+++|++.||| +|. +-.-+++.+.+.++.+. .+. ..++++.+-| + |.+++.+. .+.|+|||-
T Consensus 192 leea~~A~~~GaD---iI~----LDn~~~e~l~~~v~~~~--~~~-~~~~ieAsGg-I-t~~ni~~y----a~~GvD~Is 255 (273)
T PRK05848 192 LEEAKNAMNAGAD---IVM----CDNMSVEEIKEVVAYRN--ANY-PHVLLEASGN-I-TLENINAY----AKSGVDAIS 255 (273)
T ss_pred HHHHHHHHHcCCC---EEE----ECCCCHHHHHHHHHHhh--ccC-CCeEEEEECC-C-CHHHHHHH----HHcCCCEEE
Confidence 5799999999998 332 22224444444443221 112 2355555544 6 88888644 578999998
Q ss_pred cCC
Q psy965 208 TSG 210 (214)
Q Consensus 208 TST 210 (214)
||+
T Consensus 256 vG~ 258 (273)
T PRK05848 256 SGS 258 (273)
T ss_pred eCh
Confidence 875
No 59
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=86.07 E-value=12 Score=30.08 Aligned_cols=76 Identities=17% Similarity=0.086 Sum_probs=52.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCC---CHHHHHHH
Q psy965 118 PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK---TSENIYCA 194 (214)
Q Consensus 118 P~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~---t~e~i~~A 194 (214)
.+|....+.=..-++++++.|++-| +++- +-++.+++.+++ ..+.+|.-++..+ ..++..+.
T Consensus 6 ~~~~~d~~~~~~~~~~~~~~gv~gi--~~~g------------~~i~~~~~~~~~-~~~~v~~~v~~~~~~~~~~~~~~~ 70 (201)
T cd00945 6 LHPDATLEDIAKLCDEAIEYGFAAV--CVNP------------GYVRLAADALAG-SDVPVIVVVGFPTGLTTTEVKVAE 70 (201)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCcEE--EECH------------HHHHHHHHHhCC-CCCeEEEEecCCCCCCcHHHHHHH
Confidence 3445567777778889999998863 3443 334455555543 2467888888763 04677788
Q ss_pred HHHHHHcCCCEEEc
Q psy965 195 SMTAMFAGSDFIKT 208 (214)
Q Consensus 195 ~~ia~~aGaDFIKT 208 (214)
++.|.++|+|+|..
T Consensus 71 a~~a~~~Gad~i~v 84 (201)
T cd00945 71 VEEAIDLGADEIDV 84 (201)
T ss_pred HHHHHHcCCCEEEE
Confidence 89999999999985
No 60
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=85.75 E-value=8.1 Score=35.76 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=63.8
Q ss_pred HHHHHHHHHHCCCCEEEEecChhHhh-----cCChhHHHHHHHHHHHHhcC-CceEEEEEeccCCCCHHHHHHHHHHHHH
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMF 200 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~l~-----sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt~~L~t~e~i~~A~~ia~~ 200 (214)
....++.|++.|++.|.+++..+-.. ....++..+.+....+.+.. +..+-+-+|.+.-.+.+.+.+.++.+.+
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~ 152 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEE 152 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHh
Confidence 35678999999999999998876542 23566777777777766643 3567777788776688999999999999
Q ss_pred cCCCEE--EcCCC
Q psy965 201 AGSDFI--KTSGS 211 (214)
Q Consensus 201 aGaDFI--KTSTG 211 (214)
+|+|-| +-++|
T Consensus 153 ~g~~~i~l~DT~G 165 (363)
T TIGR02090 153 AGADRINIADTVG 165 (363)
T ss_pred CCCCEEEEeCCCC
Confidence 999975 34444
No 61
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=85.69 E-value=10 Score=34.07 Aligned_cols=82 Identities=17% Similarity=0.067 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEecC----------hhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHH
Q psy965 124 LETRLHEIELLAKQKVDEVDIVIQ----------RSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 124 ~~~K~~E~~~Ai~~GAdEID~Vin----------~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~ 193 (214)
.+.=..-++.+.+.|+|.||+=.- .|..+.++.+.+.+-++++++.++-+..+|+=+ |.-.+..+...
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~--g~~~~~~~~~~ 151 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI--GWDDAHINAVE 151 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc--ccCCCcchHHH
Confidence 344445666777889999998322 133455677888888999998886445666543 32212233556
Q ss_pred HHHHHHHcCCCEEE
Q psy965 194 ASMTAMFAGSDFIK 207 (214)
Q Consensus 194 A~~ia~~aGaDFIK 207 (214)
.+..+.++|+|+|-
T Consensus 152 ~a~~l~~~G~d~i~ 165 (319)
T TIGR00737 152 AARIAEDAGAQAVT 165 (319)
T ss_pred HHHHHHHhCCCEEE
Confidence 67778899999994
No 62
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=85.53 E-value=18 Score=32.03 Aligned_cols=113 Identities=17% Similarity=0.081 Sum_probs=66.9
Q ss_pred ccCcccHHHHHHhhhcC-CCCCCeEEEecCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHH
Q psy965 88 RGFVSTVWHGSDNLKTK-LVYQPCLSQPAGFPSG-QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQ 165 (214)
Q Consensus 88 cv~P~~V~~a~~~L~~~-gs~v~vatV~igFP~G-~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~ 165 (214)
+.+.+.++.+.+..+.. ..+..+... ++|..+ ..+.+--..-++.+.+.||+.|=++=-.|.+ ..+.+++=+..
T Consensus 111 ~~~~~~~~~~~~~i~~ak~~G~~v~~~-i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~---~P~~v~~lv~~ 186 (275)
T cd07937 111 FDALNDVRNLEVAIKAVKKAGKHVEGA-ICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLL---TPYAAYELVKA 186 (275)
T ss_pred eecCChHHHHHHHHHHHHHCCCeEEEE-EEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC---CHHHHHHHHHH
Confidence 44555555544433221 234555444 577665 4555555666788888999998666444433 46677777777
Q ss_pred HHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCC
Q psy965 166 MKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 166 v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTST 210 (214)
+++..+ +-|+.-.=+|...-..-+..|+++|+++|-+|-
T Consensus 187 l~~~~~------~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv 225 (275)
T cd07937 187 LKKEVG------LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAI 225 (275)
T ss_pred HHHhCC------CeEEEEecCCCChHHHHHHHHHHhCCCEEEEec
Confidence 776543 334543332333333445678899999999874
No 63
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=85.34 E-value=7.9 Score=35.35 Aligned_cols=68 Identities=24% Similarity=0.245 Sum_probs=45.4
Q ss_pred HHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
-...++..++.|++-|.+- .+. |+-+.+.+-|+.+++..+ .++||. |-..|.+. ++.++++|+|||
T Consensus 95 ~~~~~~~l~eagv~~I~vd--~~~---G~~~~~~~~i~~ik~~~p---~v~Vi~--G~v~t~~~----A~~l~~aGaD~I 160 (325)
T cd00381 95 DKERAEALVEAGVDVIVID--SAH---GHSVYVIEMIKFIKKKYP---NVDVIA--GNVVTAEA----ARDLIDAGADGV 160 (325)
T ss_pred HHHHHHHHHhcCCCEEEEE--CCC---CCcHHHHHHHHHHHHHCC---CceEEE--CCCCCHHH----HHHHHhcCCCEE
Confidence 3567888899999865543 221 445677777888887653 377777 43435443 356678999999
Q ss_pred Ec
Q psy965 207 KT 208 (214)
Q Consensus 207 KT 208 (214)
+.
T Consensus 161 ~v 162 (325)
T cd00381 161 KV 162 (325)
T ss_pred EE
Confidence 95
No 64
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=85.14 E-value=17 Score=31.58 Aligned_cols=148 Identities=17% Similarity=0.066 Sum_probs=81.4
Q ss_pred HHHHHHhhhhhcccCCCCCC----CHHHHHHHHHHhhccCchhhhcccccc-CcccHHHHHHhhhcCCCCCCeEEEecCC
Q psy965 43 KSLLLKIIEFIDLTTLSGDD----TEAVVETLTLKAIQPLSEELKEKVLRG-FVSTVWHGSDNLKTKLVYQPCLSQPAGF 117 (214)
Q Consensus 43 ~~~l~~~~~~ID~TlL~~~~----T~~~I~~lc~eA~~~f~~~~~~~~~cv-~P~~V~~a~~~L~~~gs~v~vatV~igF 117 (214)
.+|.++..+......+.+.. |..-=++++++.++.|- .. ++.|+......++ .++.+++.-+
T Consensus 13 ~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~--------~~~~~~~~~~~~~~~~--~~~~p~~vqi--- 79 (233)
T cd02911 13 GDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFL--------PDDPLEFIEGEIKALK--DSNVLVGVNV--- 79 (233)
T ss_pred HHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCcccc--------ccchHHHHHHHHHHhh--ccCCeEEEEe---
Confidence 34544455666666664422 22222344444443221 11 3456665555555 3444544442
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEecCh----------hHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCC
Q psy965 118 PSGQYLLETRLHEIELLAKQKVDEVDIVIQR----------SLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKT 187 (214)
Q Consensus 118 P~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~----------~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t 187 (214)
.|.++ +.-. ++-.-++.+++.||+-+-. |..+-.+.+.+.+-++++++ ++-+..+|+=+.. +
T Consensus 80 -~g~~~-~~~~-~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~----~ 151 (233)
T cd02911 80 -RSSSL-EPLL-NAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGV----D 151 (233)
T ss_pred -cCCCH-HHHH-HHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCc----C
Confidence 13333 3333 3333445567999986542 44444578888888899987 4323556655432 2
Q ss_pred HHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 188 SENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 188 ~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
++....++.+.++|+|+|--++++
T Consensus 152 -~~~~~la~~l~~aG~d~ihv~~~~ 175 (233)
T cd02911 152 -VDDEELARLIEKAGADIIHVDAMD 175 (233)
T ss_pred -cCHHHHHHHHHHhCCCEEEECcCC
Confidence 345567788889999999877765
No 65
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=85.03 E-value=17 Score=32.07 Aligned_cols=91 Identities=14% Similarity=0.071 Sum_probs=61.4
Q ss_pred cCC-CCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHH
Q psy965 115 AGF-PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 115 igF-P~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~ 193 (214)
+=| +.|.-..+.=..-+++.++.|++-|=+.=..|-.-+=..++-.+=++.+++.+++ .+.||.-++..++ ++..+
T Consensus 8 TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~--~~~vi~gv~~~s~-~~~i~ 84 (285)
T TIGR00674 8 TPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG--RVPVIAGTGSNAT-EEAIS 84 (285)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC--CCeEEEeCCCccH-HHHHH
Confidence 455 5677777777888999999999885443333333222233333334445555554 4789999998854 66778
Q ss_pred HHHHHHHcCCCEEEc
Q psy965 194 ASMTAMFAGSDFIKT 208 (214)
Q Consensus 194 A~~ia~~aGaDFIKT 208 (214)
.++.|.++|+|.|=-
T Consensus 85 ~a~~a~~~Gad~v~v 99 (285)
T TIGR00674 85 LTKFAEDVGADGFLV 99 (285)
T ss_pred HHHHHHHcCCCEEEE
Confidence 889999999998753
No 66
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=84.70 E-value=14 Score=32.21 Aligned_cols=92 Identities=18% Similarity=0.128 Sum_probs=66.5
Q ss_pred cCC-CCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHH
Q psy965 115 AGF-PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 115 igF-P~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~ 193 (214)
+=| +.|.-..+.=...++..++.|++-|-+-=.-|-..+=.+++-.+=++.+++.+++ .+.||.-++..++ ++..+
T Consensus 7 TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~--~~~vi~gv~~~~~-~~~i~ 83 (281)
T cd00408 7 TPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG--RVPVIAGVGANST-REAIE 83 (281)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCC--CCeEEEecCCccH-HHHHH
Confidence 344 5677777888888999999999997555455544444455555555666666654 5789999999844 66678
Q ss_pred HHHHHHHcCCCEEEcC
Q psy965 194 ASMTAMFAGSDFIKTS 209 (214)
Q Consensus 194 A~~ia~~aGaDFIKTS 209 (214)
.++.+.++|+|.|=-.
T Consensus 84 ~a~~a~~~Gad~v~v~ 99 (281)
T cd00408 84 LARHAEEAGADGVLVV 99 (281)
T ss_pred HHHHHHHcCCCEEEEC
Confidence 8889999999987543
No 67
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=84.69 E-value=4.3 Score=39.47 Aligned_cols=68 Identities=22% Similarity=0.201 Sum_probs=49.4
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
..-++..++.|+|- ++++.. .|+-..+.+-|+.+++..++ +.+|.-.. .|.++ ++.++++|+|+||
T Consensus 250 ~~r~~~l~~ag~d~--i~iD~~---~g~~~~~~~~i~~ik~~~p~---~~vi~g~v--~t~e~----a~~a~~aGaD~i~ 315 (505)
T PLN02274 250 KERLEHLVKAGVDV--VVLDSS---QGDSIYQLEMIKYIKKTYPE---LDVIGGNV--VTMYQ----AQNLIQAGVDGLR 315 (505)
T ss_pred HHHHHHHHHcCCCE--EEEeCC---CCCcHHHHHHHHHHHHhCCC---CcEEEecC--CCHHH----HHHHHHcCcCEEE
Confidence 45678888899988 566764 57888888999999986654 45555322 25444 4567789999999
Q ss_pred cC
Q psy965 208 TS 209 (214)
Q Consensus 208 TS 209 (214)
.|
T Consensus 316 vg 317 (505)
T PLN02274 316 VG 317 (505)
T ss_pred EC
Confidence 87
No 68
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=84.58 E-value=12 Score=34.20 Aligned_cols=97 Identities=18% Similarity=0.116 Sum_probs=61.8
Q ss_pred CCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecC----------hhHhhcCChhHHHHHHHHHHHHhcCCceE
Q psy965 107 YQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQ----------RSLVLNNQWPELFSEVKQMKEKCGEKIHM 176 (214)
Q Consensus 107 ~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin----------~~~l~sg~~~~v~~Ei~~v~~a~~~~~~l 176 (214)
..+++.-+ .|.++ +.=..-++.+.+.|+|.||+=.- +|..+..+.+.+.+=+++++++++-+..+
T Consensus 64 e~p~~vQl----~g~~p-~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsv 138 (333)
T PRK11815 64 EHPVALQL----GGSDP-ADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTV 138 (333)
T ss_pred CCcEEEEE----eCCCH-HHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEE
Confidence 44544442 34444 33344566777789999996421 14455568888888889999887544666
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 177 KTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 177 KvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
|.=+-...-.+.++....+..+.++|+|+|--
T Consensus 139 KiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~v 170 (333)
T PRK11815 139 KHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIV 170 (333)
T ss_pred EEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEE
Confidence 65332222224456667788888999999953
No 69
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=84.35 E-value=32 Score=31.51 Aligned_cols=101 Identities=16% Similarity=0.071 Sum_probs=57.6
Q ss_pred CCCeEEEecCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecChhH---hhcCCh-hHHHHHHHHHHHHhc-----CCce
Q psy965 107 YQPCLSQPAGFPSG--QYLLETRLHEIELLAKQKVDEVDIVIQRSL---VLNNQW-PELFSEVKQMKEKCG-----EKIH 175 (214)
Q Consensus 107 ~v~vatV~igFP~G--~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~---l~sg~~-~~v~~Ei~~v~~a~~-----~~~~ 175 (214)
++++..-+.|.+.. ....+.=+..++.+ ..+||-|++=+.... ...+++ +.+.+=+++++++.+ -+..
T Consensus 137 ~~pvivsI~~~~~~~~~~~~~d~~~~~~~~-~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~ 215 (344)
T PRK05286 137 GIPLGINIGKNKDTPLEDAVDDYLICLEKL-YPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLL 215 (344)
T ss_pred CCcEEEEEecCCCCCcccCHHHHHHHHHHH-HhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceE
Confidence 45444442455432 22333434444444 447888776332211 122333 444445577777776 2355
Q ss_pred EEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 176 MKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 176 lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
+|+= ..+ +.+++...++.+.++|+|+|..+.++
T Consensus 216 vKls---p~~-~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 216 VKIA---PDL-SDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred EEeC---CCC-CHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 6654 234 56778889999999999999987654
No 70
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=84.21 E-value=20 Score=31.38 Aligned_cols=92 Identities=14% Similarity=0.062 Sum_probs=64.6
Q ss_pred cCC-CCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHH
Q psy965 115 AGF-PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 115 igF-P~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~ 193 (214)
+=| +.|.-..+.=...+++.++.|++-+=+-=..|-.-+=..++-.+=++.+++.+++ .+.+|.-++.. +.++..+
T Consensus 10 TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~--~~~vi~gv~~~-~~~~~~~ 86 (284)
T cd00950 10 TPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNG--RVPVIAGTGSN-NTAEAIE 86 (284)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCC--CCcEEeccCCc-cHHHHHH
Confidence 445 5677777888888999999999986555445444443444444445556666654 47889999988 4466778
Q ss_pred HHHHHHHcCCCEEEcC
Q psy965 194 ASMTAMFAGSDFIKTS 209 (214)
Q Consensus 194 A~~ia~~aGaDFIKTS 209 (214)
.++.|.++|+|.|=..
T Consensus 87 ~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 87 LTKRAEKAGADAALVV 102 (284)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 8899999999987544
No 71
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=84.00 E-value=19 Score=30.69 Aligned_cols=83 Identities=22% Similarity=0.149 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHH
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMF 200 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~ 200 (214)
..+.+.-..-++.+.+.|++.|=+.=-.|. ...+.+++=+..+++..++ +.|+.-.=++...-..-+..|++
T Consensus 142 ~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~v~~li~~l~~~~~~-----~~~~~H~Hn~~gla~an~laA~~ 213 (265)
T cd03174 142 KTDPEYVLEVAKALEEAGADEISLKDTVGL---ATPEEVAELVKALREALPD-----VPLGLHTHNTLGLAVANSLAALE 213 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEechhcCC---cCHHHHHHHHHHHHHhCCC-----CeEEEEeCCCCChHHHHHHHHHH
Confidence 366666677888899999999876644443 3455666666677665542 45565544454545566778999
Q ss_pred cCCCEEEcCCC
Q psy965 201 AGSDFIKTSGS 211 (214)
Q Consensus 201 aGaDFIKTSTG 211 (214)
+|+++|-+|-+
T Consensus 214 aG~~~id~s~~ 224 (265)
T cd03174 214 AGADRVDGSVN 224 (265)
T ss_pred cCCCEEEeccc
Confidence 99999998854
No 72
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=83.96 E-value=14 Score=32.70 Aligned_cols=88 Identities=18% Similarity=0.126 Sum_probs=58.5
Q ss_pred cCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHH
Q psy965 115 AGFPSG-QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 115 igFP~G-~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~ 193 (214)
..|+.| ..+.+--+.-++.+.+.|+++|=+.=-.| ....+.+++-++.+++..++ +-|+.-.=+|...-..
T Consensus 140 ~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~-----~~l~~H~Hnd~Gla~A 211 (273)
T cd07941 140 EHFFDGYKANPEYALATLKAAAEAGADWLVLCDTNG---GTLPHEIAEIVKEVRERLPG-----VPLGIHAHNDSGLAVA 211 (273)
T ss_pred EeccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCC---CCCHHHHHHHHHHHHHhCCC-----CeeEEEecCCCCcHHH
Confidence 578666 45566666777888999999875443333 23567788888888887653 2345544434333334
Q ss_pred HHHHHHHcCCCEEEcCC
Q psy965 194 ASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 194 A~~ia~~aGaDFIKTST 210 (214)
-+..|+++|+++|-+|-
T Consensus 212 n~laA~~aGa~~id~s~ 228 (273)
T cd07941 212 NSLAAVEAGATQVQGTI 228 (273)
T ss_pred HHHHHHHcCCCEEEEec
Confidence 45678899999999874
No 73
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=83.81 E-value=28 Score=34.03 Aligned_cols=144 Identities=15% Similarity=0.006 Sum_probs=84.4
Q ss_pred HHHHHHhhhhhcc-cCCCCCCCHHHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCC--CCCeEEEecCCCC
Q psy965 43 KSLLLKIIEFIDL-TTLSGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLV--YQPCLSQPAGFPS 119 (214)
Q Consensus 43 ~~~l~~~~~~ID~-TlL~~~~T~~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs--~v~vatV~igFP~ 119 (214)
+.-|...+..++. --|+++...+++-+.-+++.+..+ .....+ +.....-++--+. +++|.+=+++-|.
T Consensus 92 ~~Dlp~~l~~~~~g~~lS~~~pAd~~~~~~~~~~~~~~-----~~e~~~---~~~~i~~~~i~~~~p~~~v~aEI~~a~~ 163 (499)
T TIGR00284 92 AVDIPDIIEILRSGIKLSTEEPADEVVLEIKKLEEYTS-----KIEERE---ADFRIGSLKIPLKPPPLRVVAEIPPTVA 163 (499)
T ss_pred HHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHH-----Hhhhcc---hhhhccCcCCCCCCCCeEEEEEEcCCcc
Confidence 6667777777777 667777777776665444443211 111211 1111111210022 4667776567775
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 199 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~ 199 (214)
- +.=+.++++.++.|||-||+=...+ . ...+.+..-|+++++.++ +.+-+.|..- +. .+.|+
T Consensus 164 l----~~i~~~A~~~~~~GADIIDIG~~st--~-p~~~~v~~~V~~l~~~~~----~pISIDT~~~---~v----~eaAL 225 (499)
T TIGR00284 164 E----DGIEGLAARMERDGADMVALGTGSF--D-DDPDVVKEKVKTALDALD----SPVIADTPTL---DE----LYEAL 225 (499)
T ss_pred h----HHHHHHHHHHHHCCCCEEEECCCcC--C-CcHHHHHHHHHHHHhhCC----CcEEEeCCCH---HH----HHHHH
Confidence 3 6667788999999999999865443 1 123446666666654332 4567777633 33 44566
Q ss_pred HcCCCEEEcCCCC
Q psy965 200 FAGSDFIKTSGSI 212 (214)
Q Consensus 200 ~aGaDFIKTSTGf 212 (214)
++|+|+|..-+|.
T Consensus 226 ~aGAdiINsVs~~ 238 (499)
T TIGR00284 226 KAGASGVIMPDVE 238 (499)
T ss_pred HcCCCEEEECCcc
Confidence 7799999977774
No 74
>PRK09389 (R)-citramalate synthase; Provisional
Probab=83.71 E-value=20 Score=34.66 Aligned_cols=80 Identities=16% Similarity=0.117 Sum_probs=63.1
Q ss_pred HHHHHHHHHCCCCEEEEecChhHh-----hcCChhHHHHHHHHHHHHhcC-CceEEEEEeccCCCCHHHHHHHHHHHHHc
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMFA 201 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l-----~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt~~L~t~e~i~~A~~ia~~a 201 (214)
...++.+++.|++.|.+++..+-+ +....+++.+.+...++.+.. +..+-+=.|.+.-.+.+-+.+.++.+.++
T Consensus 76 ~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 155 (488)
T PRK09389 76 KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEA 155 (488)
T ss_pred HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhC
Confidence 567889999999999999888754 345677788888877776643 25677778888776788888999999999
Q ss_pred CCCEEE
Q psy965 202 GSDFIK 207 (214)
Q Consensus 202 GaDFIK 207 (214)
|+|-|-
T Consensus 156 Ga~~i~ 161 (488)
T PRK09389 156 GADRIC 161 (488)
T ss_pred CCCEEE
Confidence 999763
No 75
>PRK05481 lipoyl synthase; Provisional
Probab=83.39 E-value=9.8 Score=34.12 Aligned_cols=90 Identities=11% Similarity=0.123 Sum_probs=52.7
Q ss_pred EEEecCCCCCC---CCHHHHHHHHHHHHHCCCCEEEEe-cChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCC
Q psy965 111 LSQPAGFPSGQ---YLLETRLHEIELLAKQKVDEVDIV-IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK 186 (214)
Q Consensus 111 atV~igFP~G~---~~~~~K~~E~~~Ai~~GAdEID~V-in~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~ 186 (214)
|+- .+||.+. .+.+.-+.|++++.+.|++||-++ .|.+.+.....+.+.+-++.+++..++ ..++++--.. +.
T Consensus 67 C~F-C~i~~~r~~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~-irI~~l~~~~-~~ 143 (289)
T PRK05481 67 CPF-CDVATGRPLPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPG-TTIEVLIPDF-RG 143 (289)
T ss_pred CCC-ceeCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCC-cEEEEEccCC-CC
Confidence 555 6666655 578888999999999999999998 222211112334666667777765554 4444443322 11
Q ss_pred CHHHHHHHHHHHHHcCCCEEE
Q psy965 187 TSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 187 t~e~i~~A~~ia~~aGaDFIK 207 (214)
..+.+ ...+++|++.+.
T Consensus 144 ~~e~L----~~l~~ag~~i~~ 160 (289)
T PRK05481 144 RMDAL----LTVLDARPDVFN 160 (289)
T ss_pred CHHHH----HHHHhcCcceee
Confidence 22222 234556766554
No 76
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=83.02 E-value=9.6 Score=34.95 Aligned_cols=81 Identities=10% Similarity=0.054 Sum_probs=54.2
Q ss_pred HHHHHHHCCCCEEEEecChhHhh----cC---------------ChhHHHHHHHHHHHHhcC-CceEEEEEec----c--
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVL----NN---------------QWPELFSEVKQMKEKCGE-KIHMKTILAV----G-- 183 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~----sg---------------~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt----~-- 183 (214)
-++.|.+.|.|-|++=.--|+++ |. +...+.+=|.+|+++++. ..-+|+=.+- +
T Consensus 157 aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~ 236 (338)
T cd02933 157 AARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGD 236 (338)
T ss_pred HHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCC
Confidence 45678889999999865554433 22 334455667888888875 2344543221 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 184 ELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 184 ~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
.. +.++....+..+.++|+|||-.|.|
T Consensus 237 ~~-~~ee~~~~~~~l~~~g~d~i~vs~g 263 (338)
T cd02933 237 SD-PEATFSYLAKELNKRGLAYLHLVEP 263 (338)
T ss_pred CC-CHHHHHHHHHHHHHcCCcEEEEecC
Confidence 12 5577778888889999999999887
No 77
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=83.01 E-value=5.7 Score=33.63 Aligned_cols=122 Identities=21% Similarity=0.177 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHhhcc-CchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEe-cCC---CCCCCCHHHHHHHHHHHHH
Q psy965 62 DTEAVVETLTLKAIQP-LSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQP-AGF---PSGQYLLETRLHEIELLAK 136 (214)
Q Consensus 62 ~T~~~I~~lc~eA~~~-f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~-igF---P~G~~~~~~K~~E~~~Ai~ 136 (214)
.+.+++.++.+.+... .. ......|..++.+++ .+++|+.... -.| |.-..+ -..++++|.+
T Consensus 20 ~~~~~~~~~a~a~~~~G~~-----~~~~~~~~~i~~i~~-----~~~~Pil~~~~~d~~~~~~~~~~---~~~~v~~a~~ 86 (221)
T PRK01130 20 HSPEIMAAMALAAVQGGAV-----GIRANGVEDIKAIRA-----VVDVPIIGIIKRDYPDSEVYITP---TLKEVDALAA 86 (221)
T ss_pred CCHHHHHHHHHHHHHCCCe-----EEEcCCHHHHHHHHH-----hCCCCEEEEEecCCCCCCceECC---CHHHHHHHHH
Confidence 4556677776665542 10 001123455555543 2467765330 122 221111 2257899999
Q ss_pred CCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 137 QKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 137 ~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
.|||= ++++...+.+.+-+.+.+-++.+++. . .+.++.++. +.+++ +.+.++|+|||.++
T Consensus 87 aGad~--I~~d~~~~~~p~~~~~~~~i~~~~~~-~---~i~vi~~v~---t~ee~----~~a~~~G~d~i~~~ 146 (221)
T PRK01130 87 AGADI--IALDATLRPRPDGETLAELVKRIKEY-P---GQLLMADCS---TLEEG----LAAQKLGFDFIGTT 146 (221)
T ss_pred cCCCE--EEEeCCCCCCCCCCCHHHHHHHHHhC-C---CCeEEEeCC---CHHHH----HHHHHcCCCEEEcC
Confidence 99982 33443332211112222223333322 2 366776654 55665 35788999999873
No 78
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=82.82 E-value=19 Score=32.38 Aligned_cols=88 Identities=14% Similarity=0.001 Sum_probs=58.9
Q ss_pred CCCC-CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHH
Q psy965 116 GFPS-GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCA 194 (214)
Q Consensus 116 gFP~-G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A 194 (214)
+-|. |..+.+.-+.-++.+.+.||++|=+.=-.|.+ ....+++=++.+++..++ . -|+.-.=+|.-.-..-
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~---~P~~v~~lv~~l~~~~~~-~----~i~~H~Hn~~Gla~AN 216 (287)
T PRK05692 145 GCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGVG---TPGQVRAVLEAVLAEFPA-E----RLAGHFHDTYGQALAN 216 (287)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCcc---CHHHHHHHHHHHHHhCCC-C----eEEEEecCCCCcHHHH
Confidence 4474 46677777888889999999987444333332 567888888888877653 2 2344333333333344
Q ss_pred HHHHHHcCCCEEEcCCC
Q psy965 195 SMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 195 ~~ia~~aGaDFIKTSTG 211 (214)
+..|+++|+|+|-||.+
T Consensus 217 ~laA~~aG~~~id~s~~ 233 (287)
T PRK05692 217 IYASLEEGITVFDASVG 233 (287)
T ss_pred HHHHHHhCCCEEEEEcc
Confidence 56789999999998865
No 79
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=82.80 E-value=15 Score=32.92 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=61.3
Q ss_pred HHHHHHHHHCCCCEEEEecChhHh-----hcCChhHHHHHHHHHHHHhcC-CceEEEEEeccCCCCH-----HHHHHHHH
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTS-----ENIYCASM 196 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l-----~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt~~L~t~-----e~i~~A~~ 196 (214)
...++.|++.|+++|.+++..+-. .....+++.+.+..+++.++. +..+-+-+|-.-=.+. +-+.+.+.
T Consensus 77 ~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~ 156 (279)
T cd07947 77 KEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLMK 156 (279)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHHH
Confidence 356888999999999999887643 234578888888888887753 3567777774422122 35677888
Q ss_pred HHHHcCCCE---EEcCCCC
Q psy965 197 TAMFAGSDF---IKTSGSI 212 (214)
Q Consensus 197 ia~~aGaDF---IKTSTGf 212 (214)
.+.++|+|. +.-++|.
T Consensus 157 ~~~~~G~~~~i~l~DTvG~ 175 (279)
T cd07947 157 LSKESGIPVKIRLCDTLGY 175 (279)
T ss_pred HHHHCCCCEEEEeccCCCc
Confidence 888999993 5777774
No 80
>PRK12928 lipoyl synthase; Provisional
Probab=82.74 E-value=7.3 Score=35.10 Aligned_cols=68 Identities=7% Similarity=0.071 Sum_probs=43.7
Q ss_pred eEEEecCCCCCC---CCHHHHHHHHHHHHHCCCCEEEEe-cChhHhhcCChhHHHHHHHHHHHHhcCCceEEEE
Q psy965 110 CLSQPAGFPSGQ---YLLETRLHEIELLAKQKVDEVDIV-IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTI 179 (214)
Q Consensus 110 vatV~igFP~G~---~~~~~K~~E~~~Ai~~GAdEID~V-in~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvI 179 (214)
-|+- .+||.|. .+.+.=+.+++.+.+.|++||-++ .+.+.+..+..+.+.+=+++|++..++ ..++++
T Consensus 73 ~C~F-Ca~~~g~~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~-~~I~~l 144 (290)
T PRK12928 73 RCAF-CQVDKGRPMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPG-TGIEVL 144 (290)
T ss_pred cCCC-CCccCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCC-CEEEEe
Confidence 3666 6777776 356777788888889999997775 233333344455666666677665444 556654
No 81
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=82.54 E-value=24 Score=31.47 Aligned_cols=97 Identities=13% Similarity=0.015 Sum_probs=64.7
Q ss_pred CCeEEEecCC-CCCCCCHHHHHHHHHHHHHCC-CCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC
Q psy965 108 QPCLSQPAGF-PSGQYLLETRLHEIELLAKQK-VDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 185 (214)
Q Consensus 108 v~vatV~igF-P~G~~~~~~K~~E~~~Ai~~G-AdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L 185 (214)
+-.+.+ +=| ..|.-..+.=...+++.++.| ++-|=+-=.-|-.-+=..++-.+=++.+++.+++ .+.||.-++..
T Consensus 4 v~~~~~-TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~--~~pvi~gv~~~ 80 (290)
T TIGR00683 4 IFSALL-VSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD--QIALIAQVGSV 80 (290)
T ss_pred eEeeee-cCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCC--CCcEEEecCCC
Confidence 334455 666 577777777788899999999 8884333333332222334444444555555554 47899999988
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEc
Q psy965 186 KTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
++ ++..+.++.|.++|+|.|=-
T Consensus 81 ~t-~~~i~la~~a~~~Gad~v~v 102 (290)
T TIGR00683 81 NL-KEAVELGKYATELGYDCLSA 102 (290)
T ss_pred CH-HHHHHHHHHHHHhCCCEEEE
Confidence 55 66668889999999998754
No 82
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=82.51 E-value=14 Score=32.93 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=55.3
Q ss_pred HHHHHHHHHCCCCEEEEecChhHh-----hcCChhHHHHHHHHHHHHhcC-CceEEEEEeccC------CCCHHHHHHHH
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGE------LKTSENIYCAS 195 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l-----~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt~~------L~t~e~i~~A~ 195 (214)
...++.|++.|+++|.+++..+-. .....++..+.+...++.+.. +..+.+-+++.. -.+.+.+.+.+
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~ 155 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVA 155 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHH
Confidence 458999999999999999888743 122334555555555555543 234444344321 22678888899
Q ss_pred HHHHHcCCCEE--EcCCCC
Q psy965 196 MTAMFAGSDFI--KTSGSI 212 (214)
Q Consensus 196 ~ia~~aGaDFI--KTSTGf 212 (214)
+.+.++|+|-| +-++|.
T Consensus 156 ~~~~~~Ga~~i~l~DT~G~ 174 (274)
T cd07938 156 ERLLDLGCDEISLGDTIGV 174 (274)
T ss_pred HHHHHcCCCEEEECCCCCc
Confidence 99999999976 455553
No 83
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=82.49 E-value=14 Score=33.44 Aligned_cols=101 Identities=18% Similarity=0.066 Sum_probs=57.1
Q ss_pred HHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEecC----------hhHhhcCChhHHHHHHHHH
Q psy965 98 SDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAK-QKVDEVDIVIQ----------RSLVLNNQWPELFSEVKQM 166 (214)
Q Consensus 98 ~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~-~GAdEID~Vin----------~~~l~sg~~~~v~~Ei~~v 166 (214)
.+.|......-++..-+ .|..+ ..+.++-.-+. .|+++||+=+= .|+.+-.+++.+.+=++++
T Consensus 44 ~~~~~~~~~~~p~~~Ql----~g~~~--~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~ 117 (309)
T PF01207_consen 44 IRLLPFLPNERPLIVQL----FGNDP--EDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAV 117 (309)
T ss_dssp HHHS-GCC-T-TEEEEE----E-S-H--HHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHH
T ss_pred eecccccccccceeEEE----eeccH--HHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhh
Confidence 33443322334555553 24443 33444444444 59999997332 3666677999999999999
Q ss_pred HHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 167 KEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 167 ~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
+++++-+..+|+ =.|.-.+.++....+....++|+++|
T Consensus 118 ~~~~~~pvsvKi--R~g~~~~~~~~~~~~~~l~~~G~~~i 155 (309)
T PF01207_consen 118 RKAVPIPVSVKI--RLGWDDSPEETIEFARILEDAGVSAI 155 (309)
T ss_dssp HHH-SSEEEEEE--ESECT--CHHHHHHHHHHHHTT--EE
T ss_pred hcccccceEEec--ccccccchhHHHHHHHHhhhcccceE
Confidence 998874344554 44444456778889999999999998
No 84
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=82.43 E-value=20 Score=33.50 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCh---------hHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHH
Q psy965 125 ETRLHEIELLAKQKVDEVDIVIQR---------SLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCAS 195 (214)
Q Consensus 125 ~~K~~E~~~Ai~~GAdEID~Vin~---------~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~ 195 (214)
+.=..-++.+-+.|||-||+=+.. |..+..+.+.+.+=++++++...-+..+|+= ..+ +++...+
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~---p~~---~~~~~~a 186 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLT---PNI---TDIREPA 186 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcC---CCc---ccHHHHH
Confidence 433444455556799998873221 2223356777777777787766434667763 333 3466677
Q ss_pred HHHHHcCCCEEE
Q psy965 196 MTAMFAGSDFIK 207 (214)
Q Consensus 196 ~ia~~aGaDFIK 207 (214)
+.+.++|+|.|-
T Consensus 187 ~~~~~~Gadgi~ 198 (420)
T PRK08318 187 RAAKRGGADAVS 198 (420)
T ss_pred HHHHHCCCCEEE
Confidence 888999999887
No 85
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=82.02 E-value=14 Score=35.01 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHH
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMF 200 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~ 200 (214)
....+--+.-++.+.+.||++|-+.=.+|.. ....+++-++.+++..++ +++++.-.=++.-.-..-+..|.+
T Consensus 142 rt~~~~l~~~~~~~~~~ga~~i~l~DTvG~~---~P~~~~~~i~~l~~~v~~----~~~l~~H~HnD~G~AvANslaAv~ 214 (409)
T COG0119 142 RTDPEFLAEVVKAAIEAGADRINLPDTVGVA---TPNEVADIIEALKANVPN----KVILSVHCHNDLGMAVANSLAAVE 214 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCcEEEECCCcCcc---CHHHHHHHHHHHHHhCCC----CCeEEEEecCCcchHHHHHHHHHH
Confidence 5566666667777777889999888777643 567778888888865442 799999877666666677899999
Q ss_pred cCCCEEEcC
Q psy965 201 AGSDFIKTS 209 (214)
Q Consensus 201 aGaDFIKTS 209 (214)
+||++|-++
T Consensus 215 aGa~~v~~T 223 (409)
T COG0119 215 AGADQVEGT 223 (409)
T ss_pred cCCcEEEEe
Confidence 999999876
No 86
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=81.62 E-value=35 Score=29.82 Aligned_cols=109 Identities=14% Similarity=0.009 Sum_probs=61.1
Q ss_pred cHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEE---ecC--hhHhh---cCChhHHHHHHH
Q psy965 93 TVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDI---VIQ--RSLVL---NNQWPELFSEVK 164 (214)
Q Consensus 93 ~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~---Vin--~~~l~---sg~~~~v~~Ei~ 164 (214)
++..++...+ +.++| +++++|.|+...+.-..-++..++.|++-|=+ +.+ .|.+- .=..++..+=|+
T Consensus 57 ~~~~~~~I~~--~~~~P---v~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~ 131 (243)
T cd00377 57 VLAAVRRIAR--AVDLP---VIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIK 131 (243)
T ss_pred HHHHHHHHHh--hccCC---EEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHH
Confidence 3444444333 44555 22588888877655555678888889887544 111 11110 013455666667
Q ss_pred HHHHHhcCCceEEEEEeccCC----CCHHHHHHHHHHHHHcCCCEE
Q psy965 165 QMKEKCGEKIHMKTILAVGEL----KTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 165 ~v~~a~~~~~~lKvIlEt~~L----~t~e~i~~A~~ia~~aGaDFI 206 (214)
+++++..+-..+-+|-=|.-+ ...++..+=++...++|||-|
T Consensus 132 aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v 177 (243)
T cd00377 132 AARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGI 177 (243)
T ss_pred HHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEE
Confidence 777666530134455543222 134566666778889999976
No 87
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=81.53 E-value=12 Score=34.28 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=52.9
Q ss_pred HHHHHHHCCCCEEEEecChhHhh----cC---------------ChhHHHHHHHHHHHHhcCCceEEEEEec---cCCCC
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVL----NN---------------QWPELFSEVKQMKEKCGEKIHMKTILAV---GELKT 187 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~----sg---------------~~~~v~~Ei~~v~~a~~~~~~lKvIlEt---~~L~t 187 (214)
-++.|.+.|.|-|++=.--|+|+ |. +...+.+=+.+|+++++.+..+|+=.+- +-+ +
T Consensus 147 aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~-~ 225 (337)
T PRK13523 147 AAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGL-T 225 (337)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCC-C
Confidence 35677889999999865544443 21 2234445556777777433445554321 113 5
Q ss_pred HHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 188 SENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 188 ~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
.++....+....++|+|||--|.|.
T Consensus 226 ~~e~~~i~~~l~~~gvD~i~vs~g~ 250 (337)
T PRK13523 226 VQDYVQYAKWMKEQGVDLIDVSSGA 250 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 6777778888888999999998873
No 88
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=81.33 E-value=34 Score=30.26 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=46.1
Q ss_pred CCCEEEEecCh------hHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 138 KVDEVDIVIQR------SLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 138 GAdEID~Vin~------~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
||+.||+=+.. |.-+.++.+.+.+=+++++++++-+..+|+- + +.++....++.+.++|+|+|--
T Consensus 118 ~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~---~---~~~~~~~~a~~l~~~G~d~i~v 188 (300)
T TIGR01037 118 YVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLS---P---NVTDITEIAKAAEEAGADGLTL 188 (300)
T ss_pred ccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECC---C---ChhhHHHHHHHHHHcCCCEEEE
Confidence 49998884432 3344467788888888888877534667763 1 3456677788899999999963
No 89
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=81.14 E-value=21 Score=32.51 Aligned_cols=79 Identities=9% Similarity=0.040 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCh----hHhhcCCh-hHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHH
Q psy965 125 ETRLHEIELLAKQKVDEVDIVIQR----SLVLNNQW-PELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 199 (214)
Q Consensus 125 ~~K~~E~~~Ai~~GAdEID~Vin~----~~l~sg~~-~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~ 199 (214)
+.=..-++.+-+.|||-|++=++. .....++. +.+.+-+++++++++-+..+|. ++.+ +++...++.+.
T Consensus 112 ~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl---~p~~---~~~~~~a~~l~ 185 (325)
T cd04739 112 GGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKL---SPFF---SALAHMAKQLD 185 (325)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEc---CCCc---cCHHHHHHHHH
Confidence 433344455556799987763321 11111111 3455666777776654467774 4444 34666777888
Q ss_pred HcCCCEEEcC
Q psy965 200 FAGSDFIKTS 209 (214)
Q Consensus 200 ~aGaDFIKTS 209 (214)
++|+|.|--+
T Consensus 186 ~~Gadgi~~~ 195 (325)
T cd04739 186 AAGADGLVLF 195 (325)
T ss_pred HcCCCeEEEE
Confidence 9999998643
No 90
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=81.01 E-value=30 Score=30.93 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=64.4
Q ss_pred CCeEEEecCC-CCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCC
Q psy965 108 QPCLSQPAGF-PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK 186 (214)
Q Consensus 108 v~vatV~igF-P~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~ 186 (214)
+-.+.+ +=| +.|.-..+.=...+++.++.|++-|=+-=.-|-+-+=..++-.+=++.+++.+.+ .+.||.-++..+
T Consensus 4 v~~a~~-TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g--~~pvi~gv~~~~ 80 (294)
T TIGR02313 4 SIAPLI-TPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAG--RIPFAPGTGALN 80 (294)
T ss_pred eeeeee-CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC--CCcEEEECCcch
Confidence 333444 556 5688888888889999999999975443333333333334444444555555554 478999999885
Q ss_pred CHHHHHHHHHHHHHcCCCEEE
Q psy965 187 TSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 187 t~e~i~~A~~ia~~aGaDFIK 207 (214)
+ ++-.+.++.|.++|+|.+=
T Consensus 81 t-~~ai~~a~~A~~~Gad~v~ 100 (294)
T TIGR02313 81 H-DETLELTKFAEEAGADAAM 100 (294)
T ss_pred H-HHHHHHHHHHHHcCCCEEE
Confidence 5 5555788889999999874
No 91
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=80.95 E-value=14 Score=32.40 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=50.1
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
...++.|.+.|.+.|-+....+.. +.+.+-++..++ .+..+-+-++.+...+++.+.+.++.+.++|+|-|
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~-----~~~~~~i~~ak~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i 158 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA-----DVSEQHIGAARK---LGMDVVGFLMMSHMASPEELAEQAKLMESYGADCV 158 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH-----HHHHHHHHHHHH---CCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEE
Confidence 367899999999999988766632 233333333332 12456667777777688999999999999999965
No 92
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=80.62 E-value=31 Score=30.07 Aligned_cols=88 Identities=8% Similarity=0.048 Sum_probs=57.7
Q ss_pred cCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHH
Q psy965 115 AGFPSGQ-YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 115 igFP~G~-~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~ 193 (214)
+++|.+. .+.+.-..-++.+.+.|++.|=++=-.|. ...+.+++-+..+++..+ +-|+.-.=+|...-..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~------~~l~~H~Hn~~Gla~A 198 (259)
T cd07939 128 VGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGI---LDPFTTYELIRRLRAATD------LPLEFHAHNDLGLATA 198 (259)
T ss_pred EeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCC---CCHHHHHHHHHHHHHhcC------CeEEEEecCCCChHHH
Confidence 4788665 44555555667778899999866544553 346777777777776442 2355554444443444
Q ss_pred HHHHHHHcCCCEEEcCCC
Q psy965 194 ASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 194 A~~ia~~aGaDFIKTSTG 211 (214)
-+..|+++|+++|-+|-+
T Consensus 199 n~laAi~aG~~~vd~s~~ 216 (259)
T cd07939 199 NTLAAVRAGATHVSVTVN 216 (259)
T ss_pred HHHHHHHhCCCEEEEecc
Confidence 556789999999998753
No 93
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=80.57 E-value=38 Score=29.99 Aligned_cols=80 Identities=18% Similarity=0.027 Sum_probs=53.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEE--E--eccCCCCHHHHH
Q psy965 117 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTI--L--AVGELKTSENIY 192 (214)
Q Consensus 117 FP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvI--l--Et~~L~t~e~i~ 192 (214)
+.....|.+.+...++.+.+.|++.|-+....+. .+.+.+-++..++. -++|. + +.+.-.+++.+.
T Consensus 83 ~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~-----~~~~~~~i~~ak~~-----G~~v~~~i~~~~~~~~~~~~~~ 152 (275)
T cd07937 83 VGYRHYPDDVVELFVEKAAKNGIDIFRIFDALND-----VRNLEVAIKAVKKA-----GKHVEGAICYTGSPVHTLEYYV 152 (275)
T ss_pred cCccCCCcHHHHHHHHHHHHcCCCEEEEeecCCh-----HHHHHHHHHHHHHC-----CCeEEEEEEecCCCCCCHHHHH
Confidence 3345577788888999999999999888776654 33444444444332 13333 2 222233778888
Q ss_pred HHHHHHHHcCCCEE
Q psy965 193 CASMTAMFAGSDFI 206 (214)
Q Consensus 193 ~A~~ia~~aGaDFI 206 (214)
+.++.+.++|+|-|
T Consensus 153 ~~~~~~~~~Ga~~i 166 (275)
T cd07937 153 KLAKELEDMGADSI 166 (275)
T ss_pred HHHHHHHHcCCCEE
Confidence 89999999999975
No 94
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=80.51 E-value=38 Score=29.48 Aligned_cols=137 Identities=9% Similarity=0.000 Sum_probs=80.5
Q ss_pred CCCCHHHHHHHHHHhhc-cCchhhhccccccCcccHHHH---HHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHH
Q psy965 60 GDDTEAVVETLTLKAIQ-PLSEELKEKVLRGFVSTVWHG---SDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLA 135 (214)
Q Consensus 60 ~~~T~~~I~~lc~eA~~-~f~~~~~~~~~cv~P~~V~~a---~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai 135 (214)
...|.++..++.+.-.. ++. ..-+.+|.+-+.- .+.+.+.+.+.++.+. .-| ....++.|.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~-----~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~--~r~--------~~~~v~~a~ 79 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVD-----EIEVGIPAMGEEEREAIRAIVALGLPARLIVW--CRA--------VKEDIEAAL 79 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCC-----EEEEecCCCCHHHHHHHHHHHhcCCCCEEEEe--ccC--------CHHHHHHHH
Confidence 35677777776666443 222 1125566553222 2233322344554444 111 244578899
Q ss_pred HCCCCEEEEecChhHh-----hcCChhHHHHHHHHHHHHhcC-CceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE--E
Q psy965 136 KQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMFAGSDFI--K 207 (214)
Q Consensus 136 ~~GAdEID~Vin~~~l-----~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI--K 207 (214)
+.|++.|-+++..+-. +....++..+.+..+.+.+.. +..+-+=+|...-.+++.+.+.++.+.++|+|-| +
T Consensus 80 ~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 159 (259)
T cd07939 80 RCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFA 159 (259)
T ss_pred hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeC
Confidence 9999999999866543 233456666777777776653 2344444444444478999999999999999965 3
Q ss_pred cCCC
Q psy965 208 TSGS 211 (214)
Q Consensus 208 TSTG 211 (214)
=++|
T Consensus 160 DT~G 163 (259)
T cd07939 160 DTVG 163 (259)
T ss_pred CCCC
Confidence 4444
No 95
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=80.50 E-value=24 Score=31.90 Aligned_cols=85 Identities=8% Similarity=0.006 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
+.+.-..+++++.+.|.+-+-+=+..+.......+...+=++++++++++ -+++.+....--+.++..+.++...+.|
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~--~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 216 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGP--DVDLMVDANGRWDLAEAIRLARALEEYD 216 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCC--CCEEEEECCCCCCHHHHHHHHHHhCccC
Confidence 56777789999999999988875543322222245566668888888875 3567776643337777777777777789
Q ss_pred CCEEEcC
Q psy965 203 SDFIKTS 209 (214)
Q Consensus 203 aDFIKTS 209 (214)
.+||--+
T Consensus 217 i~~iEqP 223 (357)
T cd03316 217 LFWFEEP 223 (357)
T ss_pred CCeEcCC
Confidence 9998643
No 96
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=80.47 E-value=28 Score=32.19 Aligned_cols=110 Identities=10% Similarity=0.020 Sum_probs=58.7
Q ss_pred CcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCh--hHhh-cC--ChhHHHHHHH
Q psy965 90 FVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQR--SLVL-NN--QWPELFSEVK 164 (214)
Q Consensus 90 ~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~--~~l~-sg--~~~~v~~Ei~ 164 (214)
.|. +....+.+++...+.++.+= +|=|.-.......+.++.+.+ +||-+++=+|. ..+. +| +|+.+.+.|+
T Consensus 104 ~~~-~~~~~~~vr~~~p~~p~~aN-l~~~~~~~~~~~~~~~~~~~~--~adal~l~l~~~qe~~~p~g~~~f~~~le~i~ 179 (352)
T PRK05437 104 DPE-LADSFSVVRKVAPDGLLFAN-LGAVQLYGYGVEEAQRAVEMI--EADALQIHLNPLQELVQPEGDRDFRGWLDNIA 179 (352)
T ss_pred Chh-hHHHHHHHHHHCCCceEEee-cCccccCCCCHHHHHHHHHhc--CCCcEEEeCccchhhcCCCCcccHHHHHHHHH
Confidence 455 33333333332335555554 344433222233333444444 56666655555 2222 22 4666778999
Q ss_pred HHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCC
Q psy965 165 QMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 165 ~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTST 210 (214)
.+++..+-+..+|.. |.=.+ ...++.+.++|+|+|--|.
T Consensus 180 ~i~~~~~vPVivK~~---g~g~s----~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 180 EIVSALPVPVIVKEV---GFGIS----KETAKRLADAGVKAIDVAG 218 (352)
T ss_pred HHHHhhCCCEEEEeC---CCCCc----HHHHHHHHHcCCCEEEECC
Confidence 999877544778853 32113 2445677789999998653
No 97
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=80.29 E-value=18 Score=30.99 Aligned_cols=74 Identities=23% Similarity=0.219 Sum_probs=47.1
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
..++..|++.||+-|=.-+|+-.=..++--.+..++..+.+..+ ...|++.-.. . +.+++.. +..+|+|+|+
T Consensus 112 ~~Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~--~~tkil~As~-r-~~~ei~~----a~~~Gad~vT 183 (211)
T cd00956 112 AAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYG--FDTKILAASI-R-NPQHVIE----AALAGADAIT 183 (211)
T ss_pred HHHHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcC--CCceEEeccc-C-CHHHHHH----HHHcCCCEEE
Confidence 45889999999987554455533333444444455555544322 4678877665 4 6677754 5679999998
Q ss_pred cC
Q psy965 208 TS 209 (214)
Q Consensus 208 TS 209 (214)
-+
T Consensus 184 v~ 185 (211)
T cd00956 184 LP 185 (211)
T ss_pred eC
Confidence 65
No 98
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=80.11 E-value=22 Score=31.61 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=59.3
Q ss_pred cCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHH
Q psy965 115 AGFPSG-QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 115 igFP~G-~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~ 193 (214)
.+.|.+ ..+.+.-+.-++.+.+.||+.|=+.=-.|. .....+++-+..+++..++ +.|+.-.=++.-.-..
T Consensus 138 f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~-----~~i~~H~Hnd~GlA~A 209 (274)
T cd07938 138 FGCPYEGEVPPERVAEVAERLLDLGCDEISLGDTIGV---ATPAQVRRLLEAVLERFPD-----EKLALHFHDTRGQALA 209 (274)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCc---cCHHHHHHHHHHHHHHCCC-----CeEEEEECCCCChHHH
Confidence 577865 445565566678888899999855544443 2467888888888875542 3445444434333444
Q ss_pred HHHHHHHcCCCEEEcCCC
Q psy965 194 ASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 194 A~~ia~~aGaDFIKTSTG 211 (214)
-+..|+++|+|+|-+|.+
T Consensus 210 N~laA~~aGa~~id~t~~ 227 (274)
T cd07938 210 NILAALEAGVRRFDSSVG 227 (274)
T ss_pred HHHHHHHhCCCEEEEecc
Confidence 567899999999998764
No 99
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=79.98 E-value=29 Score=31.92 Aligned_cols=83 Identities=18% Similarity=0.080 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHH
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMF 200 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~ 200 (214)
..+.+.=+..++.+.+.||+.|=++=-.|.+ ..+.+++=+.++++..++. +-|+.--=+|...=..-+..|++
T Consensus 139 ~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~---~P~~v~~~v~~l~~~l~~~----i~ig~H~HnnlGla~ANslaAi~ 211 (333)
T TIGR03217 139 MTPPEKLAEQAKLMESYGADCVYIVDSAGAM---LPDDVRDRVRALKAVLKPE----TQVGFHAHHNLSLAVANSIAAIE 211 (333)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEccCCCCC---CHHHHHHHHHHHHHhCCCC----ceEEEEeCCCCchHHHHHHHHHH
Confidence 3456666777788888999998555444543 3567777777777655421 22344433344444455678899
Q ss_pred cCCCEEEcCC
Q psy965 201 AGSDFIKTSG 210 (214)
Q Consensus 201 aGaDFIKTST 210 (214)
+|+++|-+|-
T Consensus 212 aGa~~iD~Sl 221 (333)
T TIGR03217 212 AGATRIDASL 221 (333)
T ss_pred hCCCEEEeec
Confidence 9999998874
No 100
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=79.88 E-value=16 Score=33.03 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=50.1
Q ss_pred CCCCCC--CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHH---HHhcCCceEEEEEeccCCCCHHH
Q psy965 116 GFPSGQ--YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMK---EKCGEKIHMKTILAVGELKTSEN 190 (214)
Q Consensus 116 gFP~G~--~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~---~a~~~~~~lKvIlEt~~L~t~e~ 190 (214)
+|=-|. ..++.=+.++++.++.|||-||+=---+.--+ +.-...+|+..+. ++......+-+=++|-..
T Consensus 27 SFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~-~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~~----- 100 (282)
T PRK11613 27 SFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGA-AEVSVEEELDRVIPVVEAIAQRFEVWISVDTSKP----- 100 (282)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCCH-----
Confidence 354443 36788899999999999999998721110001 1122334544433 222210112244444422
Q ss_pred HHHHHHHHHHcCCCEEEcCCCC
Q psy965 191 IYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 191 i~~A~~ia~~aGaDFIKTSTGf 212 (214)
...+.|.++|+|.|.--+|+
T Consensus 101 --~va~~AL~~GadiINDI~g~ 120 (282)
T PRK11613 101 --EVIRESAKAGAHIINDIRSL 120 (282)
T ss_pred --HHHHHHHHcCCCEEEECCCC
Confidence 33556778899999877775
No 101
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=79.50 E-value=36 Score=30.92 Aligned_cols=79 Identities=10% Similarity=0.069 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEecCh----hHhhcCCh-hHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHH
Q psy965 124 LETRLHEIELLAKQKVDEVDIVIQR----SLVLNNQW-PELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTA 198 (214)
Q Consensus 124 ~~~K~~E~~~Ai~~GAdEID~Vin~----~~l~sg~~-~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia 198 (214)
.+.-..-++.+.+.|||-|++=++. .....++. +.+.+-++++++.++-+..+|. ++.+ +++...++.+
T Consensus 113 ~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl---~p~~---~~~~~~a~~l 186 (334)
T PRK07565 113 AGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKL---SPYF---SNLANMAKRL 186 (334)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEe---CCCc---hhHHHHHHHH
Confidence 3333444555556799998883321 11112222 2355666777776653466774 3433 3466777888
Q ss_pred HHcCCCEEEc
Q psy965 199 MFAGSDFIKT 208 (214)
Q Consensus 199 ~~aGaDFIKT 208 (214)
.++|+|+|--
T Consensus 187 ~~~G~dgI~~ 196 (334)
T PRK07565 187 DAAGADGLVL 196 (334)
T ss_pred HHcCCCeEEE
Confidence 8999999854
No 102
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=79.39 E-value=36 Score=30.24 Aligned_cols=101 Identities=16% Similarity=0.027 Sum_probs=66.9
Q ss_pred CCCeEEEecCC-CCCCCCHHHHHHHHHHHHH-CCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccC
Q psy965 107 YQPCLSQPAGF-PSGQYLLETRLHEIELLAK-QKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGE 184 (214)
Q Consensus 107 ~v~vatV~igF-P~G~~~~~~K~~E~~~Ai~-~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~ 184 (214)
++-.+.+ +=| +.|.-..+.=..-+++.++ .|++-|=+-=.-|-+-+=..++-.+=++.+++.+++ .+.||.-++.
T Consensus 6 Gv~~a~~-TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~--~~~viagvg~ 82 (293)
T PRK04147 6 GVYAALL-TPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG--KVKLIAQVGS 82 (293)
T ss_pred ceeeeeE-CcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC--CCCEEecCCC
Confidence 3444444 556 5678778888888999999 999985433333322222223333334455555554 4789999998
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 185 LKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 185 L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
.++ ++..+.++.|.++|+|.|--.+.
T Consensus 83 ~~t-~~ai~~a~~a~~~Gad~v~v~~P 108 (293)
T PRK04147 83 VNT-AEAQELAKYATELGYDAISAVTP 108 (293)
T ss_pred CCH-HHHHHHHHHHHHcCCCEEEEeCC
Confidence 855 66678899999999998865544
No 103
>PRK13753 dihydropteroate synthase; Provisional
Probab=79.31 E-value=15 Score=33.17 Aligned_cols=89 Identities=9% Similarity=0.006 Sum_probs=51.2
Q ss_pred CCCCCC--CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHH---HHhcCCceEEEEEeccCCCCHHH
Q psy965 116 GFPSGQ--YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMK---EKCGEKIHMKTILAVGELKTSEN 190 (214)
Q Consensus 116 gFP~G~--~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~---~a~~~~~~lKvIlEt~~L~t~e~ 190 (214)
+|=-|. ...+.=+..+++.++.|||-||+=---+.--+ +.=...+|+..+. ++..+ ....+=++|-.-
T Consensus 14 SFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga-~~vs~eeE~~Rv~pvI~~l~~-~~~~ISIDT~~~----- 86 (279)
T PRK13753 14 SFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDA-RPVSPADEIRRIAPLLDALSD-QMHRVSIDSFQP----- 86 (279)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCC-CcCCHHHHHHHHHHHHHHHHh-CCCcEEEECCCH-----
Confidence 344444 25678888999999999999998753331111 2223345555222 22222 112344454422
Q ss_pred HHHHHHHHHHcCCCEEEcCCCCC
Q psy965 191 IYCASMTAMFAGSDFIKTSGSIQ 213 (214)
Q Consensus 191 i~~A~~ia~~aGaDFIKTSTGf~ 213 (214)
+..+.|.++|||+|.-=+|+.
T Consensus 87 --~va~~al~aGadiINDVsg~~ 107 (279)
T PRK13753 87 --ETQRYALKRGVGYLNDIQGFP 107 (279)
T ss_pred --HHHHHHHHcCCCEEEeCCCCC
Confidence 334567789999998777763
No 104
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=79.16 E-value=35 Score=33.11 Aligned_cols=129 Identities=17% Similarity=0.056 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhcc----Cchhhhcccc-ccCcccHHHHHHhhhcCCCCCCeEEEecCC---CCCCCCHHHHHHHHHHHH
Q psy965 64 EAVVETLTLKAIQP----LSEELKEKVL-RGFVSTVWHGSDNLKTKLVYQPCLSQPAGF---PSGQYLLETRLHEIELLA 135 (214)
Q Consensus 64 ~~~I~~lc~eA~~~----f~~~~~~~~~-cv~P~~V~~a~~~L~~~gs~v~vatV~igF---P~G~~~~~~K~~E~~~Ai 135 (214)
.+-|+.+++.|..+ |+ .+. |-...-+..+.+..++.|..+. .. ++| | .++.+-=+..++++.
T Consensus 104 ddvv~~fv~~a~~~Gidi~R-----ifd~lnd~~n~~~ai~~ak~~G~~~~--~~-i~yt~sp--~~t~~y~~~~a~~l~ 173 (468)
T PRK12581 104 DDIVDKFISLSAQNGIDVFR-----IFDALNDPRNIQQALRAVKKTGKEAQ--LC-IAYTTSP--VHTLNYYLSLVKELV 173 (468)
T ss_pred chHHHHHHHHHHHCCCCEEE-----EcccCCCHHHHHHHHHHHHHcCCEEE--EE-EEEEeCC--cCcHHHHHHHHHHHH
Confidence 35577788888642 22 111 2234444555555554343322 22 344 4 456777778899999
Q ss_pred HCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 136 KQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 136 ~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
+.||+.|=+.=-.|.+ ....+++-++++++.. .+-|+.-.=+|...-..-+..|+++|+|.|-||-+
T Consensus 174 ~~Gad~I~IkDtaG~l---~P~~v~~Lv~alk~~~------~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~ 240 (468)
T PRK12581 174 EMGADSICIKDMAGIL---TPKAAKELVSGIKAMT------NLPLIVHTHATSGISQMTYLAAVEAGADRIDTALS 240 (468)
T ss_pred HcCCCEEEECCCCCCc---CHHHHHHHHHHHHhcc------CCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeecc
Confidence 9999998665444433 3567777777776522 23344443334444444566789999999998864
No 105
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=78.99 E-value=46 Score=29.78 Aligned_cols=79 Identities=10% Similarity=-0.003 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHC---CCCEEEEecChhHh-----hcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHH
Q psy965 125 ETRLHEIELLAKQ---KVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASM 196 (214)
Q Consensus 125 ~~K~~E~~~Ai~~---GAdEID~Vin~~~l-----~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ 196 (214)
+.=+.-++...+. |||-||+=+..... ...+.+.+.+=++++++...-+..+|+ +..+ +.+++.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl---~p~~-~~~~~~~~a~ 178 (294)
T cd04741 103 EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKT---PPYT-DPAQFDTLAE 178 (294)
T ss_pred HHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEe---CCCC-CHHHHHHHHH
Confidence 3333344444443 78988874332121 223577777777788776643466776 3344 5577888888
Q ss_pred HHHHc--CCCEEE
Q psy965 197 TAMFA--GSDFIK 207 (214)
Q Consensus 197 ia~~a--GaDFIK 207 (214)
.+.++ |+|+|-
T Consensus 179 ~l~~~~~G~~gi~ 191 (294)
T cd04741 179 ALNAFACPISFIT 191 (294)
T ss_pred HHhccccCCcEEE
Confidence 88888 999887
No 106
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=78.87 E-value=33 Score=30.93 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 199 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~ 199 (214)
|.-..+.=...++..++.|++-|=+-=..|-+-+=..++-.+=++.+++.+++ .+.||.-++..++ ++..+.++.|.
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g--rvpvi~Gv~~~~t-~~ai~~a~~A~ 100 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAG--RVPVFVGATTLNT-RDTIARTRALL 100 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCC--CCCEEEEeccCCH-HHHHHHHHHHH
Confidence 67777777788999999999986443334433333344444444556666654 4789999999855 66668899999
Q ss_pred HcCCCEEE
Q psy965 200 FAGSDFIK 207 (214)
Q Consensus 200 ~aGaDFIK 207 (214)
++|+|.|=
T Consensus 101 ~~Gad~vl 108 (309)
T cd00952 101 DLGADGTM 108 (309)
T ss_pred HhCCCEEE
Confidence 99999764
No 107
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=78.68 E-value=21 Score=31.49 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=50.0
Q ss_pred CCCCCC--CCHHHHHHHHHHHHHCCCCEEEEec---ChhHhhcCChhHHHHHHHHHH---HHhcCCceEEEEEeccCCCC
Q psy965 116 GFPSGQ--YLLETRLHEIELLAKQKVDEVDIVI---QRSLVLNNQWPELFSEVKQMK---EKCGEKIHMKTILAVGELKT 187 (214)
Q Consensus 116 gFP~G~--~~~~~K~~E~~~Ai~~GAdEID~Vi---n~~~l~sg~~~~v~~Ei~~v~---~a~~~~~~lKvIlEt~~L~t 187 (214)
+|=-|. ...+.=+..+++.++.||+-||+=. |.+. +.-...+|+..+. +.......+-+-|.|..-
T Consensus 13 SF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~----~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~-- 86 (257)
T cd00739 13 SFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGA----DPVSVEEELERVIPVLEALRGELDVLISVDTFRA-- 86 (257)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCC----CCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCH--
Confidence 354444 3457778889999999999999943 2221 1112244544432 222221122355666532
Q ss_pred HHHHHHHHHHHHHcCCCEEEcCCCCC
Q psy965 188 SENIYCASMTAMFAGSDFIKTSGSIQ 213 (214)
Q Consensus 188 ~e~i~~A~~ia~~aGaDFIKTSTGf~ 213 (214)
++.+.|.++|+|.|..-+|+.
T Consensus 87 -----~v~e~al~~G~~iINdisg~~ 107 (257)
T cd00739 87 -----EVARAALEAGADIINDVSGGS 107 (257)
T ss_pred -----HHHHHHHHhCCCEEEeCCCCC
Confidence 334556677999999877763
No 108
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=78.61 E-value=22 Score=33.14 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=54.5
Q ss_pred HHHHHHHCCCCEEEEec-ChhHhh----c---------------CChhHHHHHHHHHHHHhcCC--ceEEEEEe------
Q psy965 130 EIELLAKQKVDEVDIVI-QRSLVL----N---------------NQWPELFSEVKQMKEKCGEK--IHMKTILA------ 181 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vi-n~~~l~----s---------------g~~~~v~~Ei~~v~~a~~~~--~~lKvIlE------ 181 (214)
-++.|.+.|.|-|++=. +-|+++ | ++...+.+=|.+|++++++. .-+|+=..
T Consensus 155 AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~ 234 (382)
T cd02931 155 SAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDL 234 (382)
T ss_pred HHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccc
Confidence 35677789999999865 325542 2 12345566778888888753 44554321
Q ss_pred -----------ccCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 182 -----------VGELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 182 -----------t~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
-+-+ +.++....++...++|+|||-.|.|.
T Consensus 235 ~~~~~~~~~~~~~g~-~~e~~~~~~~~l~~~gvD~l~vs~g~ 275 (382)
T cd02931 235 RQGALPGEEFQEKGR-DLEEGLKAAKILEEAGYDALDVDAGS 275 (382)
T ss_pred ccccccccccccCCC-CHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 0113 56777778888889999999998774
No 109
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=78.59 E-value=44 Score=29.00 Aligned_cols=140 Identities=9% Similarity=-0.044 Sum_probs=74.0
Q ss_pred CCCCCCHHHHHHHHHHhhccCchh--hhccccc---c---CcccHHHHHHhhhcCCCCCCeEEEec----CCCCCCCCHH
Q psy965 58 LSGDDTEAVVETLTLKAIQPLSEE--LKEKVLR---G---FVSTVWHGSDNLKTKLVYQPCLSQPA----GFPSGQYLLE 125 (214)
Q Consensus 58 L~~~~T~~~I~~lc~eA~~~f~~~--~~~~~~c---v---~P~~V~~a~~~L~~~gs~v~vatV~i----gFP~G~~~~~ 125 (214)
|.++.+.+++-++..++= |... ......| . .|......++.|+ ..+++|+++.. .||.|....+
T Consensus 12 ~~~~~~~~e~l~~~~~~G--~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gl~i~~~~~~~~~~~~l~~~~~~ 87 (279)
T TIGR00542 12 LPKGECWLERLQLAKTCG--FDFVEMSVDETDDRLSRLDWSREQRLALVNAII--ETGVRIPSMCLSAHRRFPLGSKDKA 87 (279)
T ss_pred CCCCCCHHHHHHHHHHcC--CCEEEEecCCccchhhccCCCHHHHHHHHHHHH--HcCCCceeeecCCCccCcCCCcCHH
Confidence 444677777776666553 2211 0000011 0 1334555666777 57888887732 2566664443
Q ss_pred HHH-------HHHHHHHHCCCCEEEEecChhHhhcC-----ChhHHHHHHHHHHHHhcCCceEEEEEec---cCCCCHHH
Q psy965 126 TRL-------HEIELLAKQKVDEVDIVIQRSLVLNN-----QWPELFSEVKQMKEKCGEKIHMKTILAV---GELKTSEN 190 (214)
Q Consensus 126 ~K~-------~E~~~Ai~~GAdEID~Vin~~~l~sg-----~~~~v~~Ei~~v~~a~~~~~~lKvIlEt---~~L~t~e~ 190 (214)
.+. .-++.|...|++-| ++.-+....+ .|+.+.+-++++.+.+.. .-+++-||+ ..+.+.+
T Consensus 88 ~r~~~~~~~~~~i~~a~~lG~~~v--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~-~Gv~l~lE~~~~~~~~t~~- 163 (279)
T TIGR00542 88 VRQQGLEIMEKAIQLARDLGIRTI--QLAGYDVYYEEHDEETRRRFREGLKEAVELAAR-AQVTLAVEIMDTPFMSSIS- 163 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEE--EecCcccccCcCCHHHHHHHHHHHHHHHHHHHH-cCCEEEEeeCCCchhcCHH-
Confidence 332 34556677899876 3332211111 145555566666666654 458999997 4454433
Q ss_pred HHHHHHHHHHcCCCEEE
Q psy965 191 IYCASMTAMFAGSDFIK 207 (214)
Q Consensus 191 i~~A~~ia~~aGaDFIK 207 (214)
.+.++.-+.|.+.++
T Consensus 164 --~~~~li~~v~~~~v~ 178 (279)
T TIGR00542 164 --KWLKWDHYLNSPWFT 178 (279)
T ss_pred --HHHHHHHHcCCCceE
Confidence 444455555655554
No 110
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=78.42 E-value=31 Score=31.54 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=45.5
Q ss_pred HHHHHHHHHHCCCCEEEEecChhH--hh---cCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHc
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSL--VL---NNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 201 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~--l~---sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~a 201 (214)
.+.++-+.+ +|+-+++=+|... .. .++|+.+.+.|+.+++..+-+..+| |+|.-.+ ...++.+.++
T Consensus 132 ~~~~~i~~i--~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK---~~g~g~~----~~~a~~L~~a 202 (333)
T TIGR02151 132 EAQEAIDMI--EADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVK---EVGFGIS----KEVAKLLADA 202 (333)
T ss_pred HHHHHHHHh--cCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEE---ecCCCCC----HHHHHHHHHc
Confidence 344444444 4555554445321 11 2346666788999998775447788 3443213 3456788899
Q ss_pred CCCEEEcCCC
Q psy965 202 GSDFIKTSGS 211 (214)
Q Consensus 202 GaDFIKTSTG 211 (214)
|+|+|--|.+
T Consensus 203 Gvd~I~Vsg~ 212 (333)
T TIGR02151 203 GVSAIDVAGA 212 (333)
T ss_pred CCCEEEECCC
Confidence 9999988753
No 111
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=78.08 E-value=38 Score=30.51 Aligned_cols=98 Identities=18% Similarity=0.055 Sum_probs=69.2
Q ss_pred CCCeEEEecCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC
Q psy965 107 YQPCLSQPAGFPS-GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 185 (214)
Q Consensus 107 ~v~vatV~igFP~-G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L 185 (214)
++-.+.+ +=|=. |.-..+.=..-+++.++.|.+-|=+.=.-|-.-+=..++-.+=+..+++++++ .+.||.-+|-.
T Consensus 7 Gvi~a~v-TPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~g--rvpviaG~g~~ 83 (299)
T COG0329 7 GVIPALV-TPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGG--RVPVIAGVGSN 83 (299)
T ss_pred cceeccc-cCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCC--CCcEEEecCCC
Confidence 4444555 66765 77777777788999999998876555444444443444545555666666665 46799999999
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEc
Q psy965 186 KTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
+| ++-.+.++.|.+.|+|-|=-
T Consensus 84 ~t-~eai~lak~a~~~Gad~il~ 105 (299)
T COG0329 84 ST-AEAIELAKHAEKLGADGILV 105 (299)
T ss_pred cH-HHHHHHHHHHHhcCCCEEEE
Confidence 66 55668899999999998753
No 112
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=77.77 E-value=12 Score=36.45 Aligned_cols=136 Identities=19% Similarity=0.151 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhhc-cCchhhhcccccc-CcccHHHHHHhhhcCCCCCCeEEEecCCCC-CCCCHHHHHHHHHHHHHCCCC
Q psy965 64 EAVVETLTLKAIQ-PLSEELKEKVLRG-FVSTVWHGSDNLKTKLVYQPCLSQPAGFPS-GQYLLETRLHEIELLAKQKVD 140 (214)
Q Consensus 64 ~~~I~~lc~eA~~-~f~~~~~~~~~cv-~P~~V~~a~~~L~~~gs~v~vatV~igFP~-G~~~~~~K~~E~~~Ai~~GAd 140 (214)
.+-++.++++|.. +.. ....+... ...-+..+.+..++.|..+. .. +.|-. ..++.+.=+.-++++.+.||+
T Consensus 96 ddvv~~fv~~a~~~Gid--i~RIfd~lndv~nl~~ai~~vk~ag~~~~--~~-i~yt~sp~~t~e~~~~~a~~l~~~Gad 170 (499)
T PRK12330 96 DEVVDRFVEKSAENGMD--VFRVFDALNDPRNLEHAMKAVKKVGKHAQ--GT-ICYTVSPIHTVEGFVEQAKRLLDMGAD 170 (499)
T ss_pred hhHHHHHHHHHHHcCCC--EEEEEecCChHHHHHHHHHHHHHhCCeEE--EE-EEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 3456677777764 211 00011111 22334444555554343321 22 24421 245677777778999999999
Q ss_pred EEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 141 EVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 141 EID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
+|=+.=-.|.+ ....+++-++++++..++ .+.|+.-.=+|...-..-+..|+++|+|+|-||-+
T Consensus 171 ~I~IkDtaGll---~P~~~~~LV~~Lk~~~~~----~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~ 234 (499)
T PRK12330 171 SICIKDMAALL---KPQPAYDIVKGIKEACGE----DTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAIS 234 (499)
T ss_pred EEEeCCCccCC---CHHHHHHHHHHHHHhCCC----CCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecc
Confidence 98544223322 467888889999887652 12233332323333334456789999999998753
No 113
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=77.55 E-value=44 Score=29.51 Aligned_cols=98 Identities=14% Similarity=0.036 Sum_probs=62.3
Q ss_pred CCeEEEecCC-CCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCC
Q psy965 108 QPCLSQPAGF-PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK 186 (214)
Q Consensus 108 v~vatV~igF-P~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~ 186 (214)
+-.+.+ +=| +.|.-..+.=...++..++.|++-|=+-=..|-.-+=..++-.+=++.+++.+++ .+.+|.-++..+
T Consensus 5 v~~~~~-TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~--~~~vi~gv~~~~ 81 (292)
T PRK03170 5 SITALV-TPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG--RVPVIAGTGSNS 81 (292)
T ss_pred eeeeee-CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCC--CCcEEeecCCch
Confidence 333444 556 6777778888888999999998885433222222221222222233445555554 467999999885
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcC
Q psy965 187 TSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 187 t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
+ ++..+.++.|.++|+|.|=..
T Consensus 82 ~-~~~i~~a~~a~~~G~d~v~~~ 103 (292)
T PRK03170 82 T-AEAIELTKFAEKAGADGALVV 103 (292)
T ss_pred H-HHHHHHHHHHHHcCCCEEEEC
Confidence 5 666688889999999987543
No 114
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=77.40 E-value=15 Score=32.87 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=45.5
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
..++.+.+.|++-|++-+|.... |+- ...+.++.+++.++.+..+|.+ + +.+. ++.+.++|+|+|-.
T Consensus 133 ~~i~~~~~~g~~~i~l~~~~p~~--~~~-~~~~~i~~l~~~~~~pvivK~v-----~-s~~~----a~~a~~~G~d~I~v 199 (299)
T cd02809 133 DLLRRAEAAGYKALVLTVDTPVL--GRR-LTWDDLAWLRSQWKGPLILKGI-----L-TPED----ALRAVDAGADGIVV 199 (299)
T ss_pred HHHHHHHHcCCCEEEEecCCCCC--CCC-CCHHHHHHHHHhcCCCEEEeec-----C-CHHH----HHHHHHCCCCEEEE
Confidence 34667777899999887776532 221 2446778888877544667743 3 4333 56778999999977
Q ss_pred C
Q psy965 209 S 209 (214)
Q Consensus 209 S 209 (214)
+
T Consensus 200 ~ 200 (299)
T cd02809 200 S 200 (299)
T ss_pred c
Confidence 4
No 115
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=77.20 E-value=25 Score=30.29 Aligned_cols=110 Identities=12% Similarity=0.000 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHhhcc-CchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy965 62 DTEAVVETLTLKAIQP-LSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVD 140 (214)
Q Consensus 62 ~T~~~I~~lc~eA~~~-f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAd 140 (214)
.+.++..+.++..... ++.. ..-.-.|...+..++ +++...++.|++- + -.-.++++.|++.||+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~i---Eit~~t~~a~~~i~~-l~~~~~~~~vGAG---------T-Vl~~~~a~~a~~aGA~ 82 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVL---EVTLRTPVALDAIRL-LRKEVPDALIGAG---------T-VLNPEQLRQAVDAGAQ 82 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEE---EEeCCCccHHHHHHH-HHHHCCCCEEEEE---------e-CCCHHHHHHHHHcCCC
Confidence 4777777877777652 4300 000114665554433 3321223332222 1 1235689999999999
Q ss_pred EEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 141 EVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 141 EID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
=| +-++.. . .+.+.|.. .-+-+| -|-+ |..|+. .|.++|+|+||-
T Consensus 83 Fi-vsP~~~--------~------~v~~~~~~-~~i~~i--PG~~-TptEi~----~A~~~Ga~~vKl 127 (204)
T TIGR01182 83 FI-VSPGLT--------P------ELAKHAQD-HGIPII--PGVA-TPSEIM----LALELGITALKL 127 (204)
T ss_pred EE-ECCCCC--------H------HHHHHHHH-cCCcEE--CCCC-CHHHHH----HHHHCCCCEEEE
Confidence 76 333321 1 44455543 112222 2777 778885 567899999993
No 116
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=76.90 E-value=31 Score=30.18 Aligned_cols=91 Identities=13% Similarity=0.017 Sum_probs=61.6
Q ss_pred cCCCCCCCCHHHH-HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHH
Q psy965 115 AGFPSGQYLLETR-LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 115 igFP~G~~~~~~K-~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~ 193 (214)
+++|.+....... ..-++.+.+.|+++|=++=-.|. ...+.+++=++.+++..++ + .+.|+.-.=+|...-..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~--~-~i~l~~H~Hn~~GlA~A 205 (268)
T cd07940 132 FSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGY---LTPEEFGELIKKLKENVPN--I-KVPISVHCHNDLGLAVA 205 (268)
T ss_pred EeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC---CCHHHHHHHHHHHHHhCCC--C-ceeEEEEecCCcchHHH
Confidence 4788666554444 66677788899999866644553 3567788888888875543 1 35566665545444444
Q ss_pred HHHHHHHcCCCEEEcCCC
Q psy965 194 ASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 194 A~~ia~~aGaDFIKTSTG 211 (214)
-+..|+++|+++|-||-+
T Consensus 206 n~laAi~aG~~~iD~s~~ 223 (268)
T cd07940 206 NSLAAVEAGARQVECTIN 223 (268)
T ss_pred HHHHHHHhCCCEEEEEee
Confidence 556788999999998854
No 117
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=76.87 E-value=6.7 Score=32.81 Aligned_cols=71 Identities=8% Similarity=0.041 Sum_probs=48.6
Q ss_pred HHHHHHHHHHCCCCEEEEecChhHhhcCChhHH-HHHHHHHHHHhcC-CceEEEEEeccCCCCHHHHHHHHHHHHHcCCC
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPEL-FSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMFAGSD 204 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v-~~Ei~~v~~a~~~-~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaD 204 (214)
...+++.|++.|||-+=++..- ....++ .++.+.+++.|+. ...+-|++-. .+....+++.+.|+|
T Consensus 8 ~~ed~~~a~~~Gvd~ig~i~~~-----~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~-------~~~~i~~ia~~~~~d 75 (203)
T cd00405 8 TLEDALAAAEAGADAIGFIFAP-----KSPRYVSPEQAREIVAALPPFVKRVGVFVNE-------DLEEILEIAEELGLD 75 (203)
T ss_pred CHHHHHHHHHcCCCEEEEecCC-----CCCCCCCHHHHHHHHHhCCCCCcEEEEEeCC-------CHHHHHHHHHhcCCC
Confidence 3568999999999999887432 344567 8888889988875 1345554322 233445677888999
Q ss_pred EEEcC
Q psy965 205 FIKTS 209 (214)
Q Consensus 205 FIKTS 209 (214)
+|.-.
T Consensus 76 ~Vqlh 80 (203)
T cd00405 76 VVQLH 80 (203)
T ss_pred EEEEC
Confidence 99743
No 118
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=76.32 E-value=49 Score=29.59 Aligned_cols=97 Identities=8% Similarity=0.036 Sum_probs=61.2
Q ss_pred CCCeEEEecCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC
Q psy965 107 YQPCLSQPAGFPSG-QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 185 (214)
Q Consensus 107 ~v~vatV~igFP~G-~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L 185 (214)
+..+...+..|.-+ ..+.+--+.-++.+.+.|+++|=+.=-.|. .....+++=++.+++..++ +.|+.-.=
T Consensus 128 G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~l~~~l~~~~~~-----~~i~~H~H 199 (280)
T cd07945 128 GIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTLGI---LSPFETYTYISDMVKRYPN-----LHFDFHAH 199 (280)
T ss_pred CCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecCCCCC---CCHHHHHHHHHHHHhhCCC-----CeEEEEeC
Confidence 34444432344322 455666666688889999999866544443 3456778888888765543 23555544
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 186 KTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
+|...=..-+..|+++|+++|-+|-+
T Consensus 200 nd~Gla~AN~laA~~aGa~~vd~s~~ 225 (280)
T cd07945 200 NDYDLAVANVLAAVKAGIKGLHTTVN 225 (280)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 44444444556789999999998864
No 119
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=75.84 E-value=12 Score=35.62 Aligned_cols=68 Identities=25% Similarity=0.340 Sum_probs=48.4
Q ss_pred HHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
=..+++..++.|+|- ++++.+. |+-..+.+-++.+++..++ +.+|.-.. .|.++ ++.++++|+|+|
T Consensus 154 ~~~~v~~lv~aGvDv--I~iD~a~---g~~~~~~~~v~~ik~~~p~---~~vi~g~V--~T~e~----a~~l~~aGaD~I 219 (404)
T PRK06843 154 TIERVEELVKAHVDI--LVIDSAH---GHSTRIIELVKKIKTKYPN---LDLIAGNI--VTKEA----ALDLISVGADCL 219 (404)
T ss_pred HHHHHHHHHhcCCCE--EEEECCC---CCChhHHHHHHHHHhhCCC---CcEEEEec--CCHHH----HHHHHHcCCCEE
Confidence 456889999999887 5666654 7777888888899887764 44555322 35444 456678899999
Q ss_pred Ec
Q psy965 207 KT 208 (214)
Q Consensus 207 KT 208 (214)
+-
T Consensus 220 ~v 221 (404)
T PRK06843 220 KV 221 (404)
T ss_pred EE
Confidence 94
No 120
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=75.70 E-value=22 Score=36.03 Aligned_cols=81 Identities=12% Similarity=0.136 Sum_probs=53.7
Q ss_pred HHHHHHHCCCCEEEEecChhHhh----c-----------C----ChhHHHHHHHHHHHHhcCC--ceEEEEEec---cCC
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVL----N-----------N----QWPELFSEVKQMKEKCGEK--IHMKTILAV---GEL 185 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~----s-----------g----~~~~v~~Ei~~v~~a~~~~--~~lKvIlEt---~~L 185 (214)
-++.|.+.|.|-||+=.--|+|+ | | +...+.+=+++|+++++.. .-+|+=.+- +-+
T Consensus 556 aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~ 635 (765)
T PRK08255 556 AARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGN 635 (765)
T ss_pred HHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCC
Confidence 45678889999999976655443 1 2 2344555667788888753 445554321 123
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 186 KTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
+.++-...++.+.++|+|||--|.|
T Consensus 636 -~~~~~~~~~~~l~~~g~d~i~vs~g 660 (765)
T PRK08255 636 -TPDDAVEIARAFKAAGADLIDVSSG 660 (765)
T ss_pred -CHHHHHHHHHHHHhcCCcEEEeCCC
Confidence 4566667788888999999998876
No 121
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=75.43 E-value=15 Score=31.48 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
+.+.=+.-++.+++.|.+-+.+..+-. ++ .+.|+.+++..+ -++++-.|-+.+.+++ +.|.++|
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~~-----~~---~~~i~~l~~~~~----~~~~iGaGTV~~~~~~----~~a~~aG 83 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNSP-----DP---FDSIAALVKALG----DRALIGAGTVLSPEQV----DRLADAG 83 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCc-----cH---HHHHHHHHHHcC----CCcEEeEEecCCHHHH----HHHHHcC
Confidence 444445567788889999999986543 22 236666665433 2478899988777665 5778999
Q ss_pred CCEEEcC
Q psy965 203 SDFIKTS 209 (214)
Q Consensus 203 aDFIKTS 209 (214)
||||-++
T Consensus 84 A~fivsp 90 (206)
T PRK09140 84 GRLIVTP 90 (206)
T ss_pred CCEEECC
Confidence 9999865
No 122
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=75.26 E-value=23 Score=30.95 Aligned_cols=75 Identities=20% Similarity=0.200 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
+.+.-+.|++.+.+.|+.++-++.--+.....++....++|..+.. . ..+++.+-+|.+ +.|.+ +...+||
T Consensus 63 ~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~---~-~~i~~~~~~g~~-~~e~l----~~Lk~aG 133 (296)
T TIGR00433 63 KVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVE---E-MGLKTCATLGLL-DPEQA----KRLKDAG 133 (296)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHH---h-CCCeEEecCCCC-CHHHH----HHHHHcC
Confidence 3455577777777788888766542221121222334444444432 2 235667777766 54443 3455777
Q ss_pred CCEE
Q psy965 203 SDFI 206 (214)
Q Consensus 203 aDFI 206 (214)
+|.|
T Consensus 134 ~~~v 137 (296)
T TIGR00433 134 LDYY 137 (296)
T ss_pred CCEE
Confidence 7765
No 123
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=75.25 E-value=8 Score=32.17 Aligned_cols=110 Identities=13% Similarity=0.071 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHhhcc-CchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy965 62 DTEAVVETLTLKAIQP-LSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVD 140 (214)
Q Consensus 62 ~T~~~I~~lc~eA~~~-f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAd 140 (214)
.++++...+++.+... ++.. .+..-.|...+..+. +++...++.+++- .-.+ ..+++.|++.||+
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~v---ev~~~~~~~~~~i~~-l~~~~~~~~iGag-------~v~~---~~~~~~a~~~Ga~ 78 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAI---EITLRTPGALEAIRA-LRKEFPEALIGAG-------TVLT---PEQADAAIAAGAQ 78 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEE---EEeCCChhHHHHHHH-HHHHCCCCEEEEE-------eCCC---HHHHHHHHHcCCC
Confidence 4677888888777752 3300 001225655554443 3321123433321 1121 2478899999998
Q ss_pred EEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 141 EVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 141 EID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
-| + ++.++ .+ +.++++. ..+++|++.. |.+|+.+| +++|+||||-
T Consensus 79 ~i--~-------~p~~~---~~---~~~~~~~-~~~~~i~gv~---t~~e~~~A----~~~Gad~i~~ 123 (190)
T cd00452 79 FI--V-------SPGLD---PE---VVKAANR-AGIPLLPGVA---TPTEIMQA----LELGADIVKL 123 (190)
T ss_pred EE--E-------cCCCC---HH---HHHHHHH-cCCcEECCcC---CHHHHHHH----HHCCCCEEEE
Confidence 76 1 22222 23 3334433 2357777655 77777554 5799999985
No 124
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=74.42 E-value=34 Score=29.86 Aligned_cols=92 Identities=15% Similarity=0.083 Sum_probs=60.3
Q ss_pred CCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEE-----
Q psy965 106 VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL----- 180 (214)
Q Consensus 106 s~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIl----- 180 (214)
..++|.+- + |..+++.-+..++.|.+.|||-+=+..+. +++ ..-+.+.+-.+++.++.+ +.+|+
T Consensus 65 ~~~~vi~g-v----~~~~~~~~i~~a~~a~~~Gad~v~v~pP~-y~~-~~~~~~~~~~~~ia~~~~----~pi~iYn~P~ 133 (281)
T cd00408 65 GRVPVIAG-V----GANSTREAIELARHAEEAGADGVLVVPPY-YNK-PSQEGIVAHFKAVADASD----LPVILYNIPG 133 (281)
T ss_pred CCCeEEEe-c----CCccHHHHHHHHHHHHHcCCCEEEECCCc-CCC-CCHHHHHHHHHHHHhcCC----CCEEEEECcc
Confidence 35555444 2 55677788889999999999998555443 444 345788888888887643 33333
Q ss_pred eccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 181 AVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 181 Et~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
-+|.--+.+.+.+.++ .-..-.||-|+|
T Consensus 134 ~tg~~l~~~~~~~L~~---~~~v~giK~s~~ 161 (281)
T cd00408 134 RTGVDLSPETIARLAE---HPNIVGIKDSSG 161 (281)
T ss_pred ccCCCCCHHHHHHHhc---CCCEEEEEeCCC
Confidence 2344436677765553 457788888875
No 125
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=74.37 E-value=17 Score=35.47 Aligned_cols=71 Identities=20% Similarity=0.185 Sum_probs=46.9
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
...++..++.|+|-|. ++ .-.|.-+.+.+-|+.+++..+. .+.|+ .|-..|.+ .++.++++||||||
T Consensus 244 ~~ra~~Lv~aGvd~i~--vd---~a~g~~~~~~~~i~~ir~~~~~--~~~V~--aGnV~t~e----~a~~li~aGAd~I~ 310 (502)
T PRK07107 244 AERVPALVEAGADVLC--ID---SSEGYSEWQKRTLDWIREKYGD--SVKVG--AGNVVDRE----GFRYLAEAGADFVK 310 (502)
T ss_pred HHHHHHHHHhCCCeEe--ec---CcccccHHHHHHHHHHHHhCCC--CceEE--eccccCHH----HHHHHHHcCCCEEE
Confidence 4566778889988754 34 3445666778889999986653 23333 34343544 35567789999999
Q ss_pred cCCC
Q psy965 208 TSGS 211 (214)
Q Consensus 208 TSTG 211 (214)
-|-|
T Consensus 311 vg~g 314 (502)
T PRK07107 311 VGIG 314 (502)
T ss_pred ECCC
Confidence 8655
No 126
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=74.36 E-value=14 Score=35.45 Aligned_cols=68 Identities=22% Similarity=0.328 Sum_probs=47.2
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
...++..++.|++-| |++.. .|+-..+.+.++.+++..++ +.+|.-+ ..|.+.. +.++++|+|+|+
T Consensus 230 ~e~a~~L~~agvdvi--vvD~a---~g~~~~vl~~i~~i~~~~p~---~~vi~g~--v~t~e~a----~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEAGVDVL--VVDTA---HGHSEGVLDRVREIKAKYPD---VQIIAGN--VATAEAA----RALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHhCCCEE--EEECC---CCcchhHHHHHHHHHhhCCC---CCEEEec--cCCHHHH----HHHHHcCCCEEE
Confidence 677888889999964 66653 25556788888888875533 5667633 3365544 466789999999
Q ss_pred cC
Q psy965 208 TS 209 (214)
Q Consensus 208 TS 209 (214)
.+
T Consensus 296 vg 297 (486)
T PRK05567 296 VG 297 (486)
T ss_pred EC
Confidence 64
No 127
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=74.23 E-value=29 Score=30.25 Aligned_cols=70 Identities=17% Similarity=0.319 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
..+.=+.-++..++.|.+-|++-.|-. ++.+ =|+++++.. + ++++-.|-..+.++.. .++++|
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~sp-----~a~e---~I~~l~~~~----p-~~lIGAGTVL~~~q~~----~a~~aG 85 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRTP-----AALE---AIRALAKEF----P-EALIGAGTVLNPEQAR----QAIAAG 85 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCC-----CHHH---HHHHHHHhC----c-ccEEccccccCHHHHH----HHHHcC
Confidence 445556677888899999999998764 3333 344454433 3 7899999888877764 678999
Q ss_pred CCEEEcC
Q psy965 203 SDFIKTS 209 (214)
Q Consensus 203 aDFIKTS 209 (214)
++||-|.
T Consensus 86 a~fiVsP 92 (211)
T COG0800 86 AQFIVSP 92 (211)
T ss_pred CCEEECC
Confidence 9999975
No 128
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=74.00 E-value=35 Score=29.89 Aligned_cols=79 Identities=15% Similarity=0.128 Sum_probs=51.3
Q ss_pred HHHHHHHHHCC----CCEEEEecChhHhh-----cCChhHHHHHHHHHHHHhcC-CceEEEEEeccCCCCHHHHHHHHHH
Q psy965 128 LHEIELLAKQK----VDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMT 197 (214)
Q Consensus 128 ~~E~~~Ai~~G----AdEID~Vin~~~l~-----sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt~~L~t~e~i~~A~~i 197 (214)
...++.|.+.| +++|.+++..+... ....+...+++..+.+.++. +..+-+=.|.+.-.+.+.+.+.++.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~ 151 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEA 151 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHH
Confidence 45678888888 99999987665442 23344555666666655543 1233343444444478888888999
Q ss_pred HHHcCCCEE
Q psy965 198 AMFAGSDFI 206 (214)
Q Consensus 198 a~~aGaDFI 206 (214)
+.++|+|-|
T Consensus 152 ~~~~G~~~i 160 (268)
T cd07940 152 AIEAGATTI 160 (268)
T ss_pred HHHcCCCEE
Confidence 999999864
No 129
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=73.94 E-value=16 Score=31.18 Aligned_cols=71 Identities=7% Similarity=0.124 Sum_probs=44.5
Q ss_pred HHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
-++.+.+.|++++ .+.+.....++.. ...+.|+.++ .. ..+.+++--| +.+.+.+. .+.++|||.|-.+
T Consensus 37 ~a~~~~~~G~~~l-~i~dl~~~~~~~~-~~~~~i~~i~---~~-~~~~l~v~GG-i~~~~~~~----~~~~~Ga~~v~iG 105 (241)
T PRK13585 37 VAKRWVDAGAETL-HLVDLDGAFEGER-KNAEAIEKII---EA-VGVPVQLGGG-IRSAEDAA----SLLDLGVDRVILG 105 (241)
T ss_pred HHHHHHHcCCCEE-EEEechhhhcCCc-ccHHHHHHHH---HH-cCCcEEEcCC-cCCHHHHH----HHHHcCCCEEEEC
Confidence 5666778999999 5558775544322 2334444444 33 3467888655 55766664 3446899998766
Q ss_pred CC
Q psy965 210 GS 211 (214)
Q Consensus 210 TG 211 (214)
|.
T Consensus 106 s~ 107 (241)
T PRK13585 106 TA 107 (241)
T ss_pred hH
Confidence 53
No 130
>PRK08508 biotin synthase; Provisional
Probab=73.82 E-value=29 Score=30.74 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHc
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 201 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~a 201 (214)
.+.+.-+.+++++.+.|++++=+|-+-..+....++++.+=++.+++..++ +++..-.|.+ +.|.+. ...+|
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~---l~i~~s~G~~-~~e~l~----~Lk~a 111 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPG---LHLIACNGTA-SVEQLK----ELKKA 111 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCC---cEEEecCCCC-CHHHHH----HHHHc
Confidence 466777777777777788887775322212233445555555555543222 3343445655 434332 23355
Q ss_pred CCCEE
Q psy965 202 GSDFI 206 (214)
Q Consensus 202 GaDFI 206 (214)
|+|.+
T Consensus 112 Gld~~ 116 (279)
T PRK08508 112 GIFSY 116 (279)
T ss_pred CCCEE
Confidence 55544
No 131
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=73.67 E-value=22 Score=32.31 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=54.4
Q ss_pred eEEEecCCCCCCC----CHHHHHHHHHHHHHCCCCEEEEe-cChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccC
Q psy965 110 CLSQPAGFPSGQY----LLETRLHEIELLAKQKVDEVDIV-IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGE 184 (214)
Q Consensus 110 vatV~igFP~G~~----~~~~K~~E~~~Ai~~GAdEID~V-in~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~ 184 (214)
=|+- .++|.|.. ..+.=..+++.+.+.|.+||=++ .|++.+..+..+.+.+=|++|++..++ ..+.+.. +.
T Consensus 76 ~C~F-C~v~~~rg~~~~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~-i~Ievl~--~d 151 (302)
T TIGR00510 76 RCPF-CDVAHGRNPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPN-IKIETLV--PD 151 (302)
T ss_pred CCCc-CCccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCC-CEEEEeC--Cc
Confidence 3666 67777642 34566788999999999998555 355555555566777777777765554 4444432 21
Q ss_pred CCCHHHHHHHHHHHHHcCCCE
Q psy965 185 LKTSENIYCASMTAMFAGSDF 205 (214)
Q Consensus 185 L~t~e~i~~A~~ia~~aGaDF 205 (214)
... ...+.....++|+|-
T Consensus 152 ~~g---~~e~l~~l~~aG~dv 169 (302)
T TIGR00510 152 FRG---NIAALDILLDAPPDV 169 (302)
T ss_pred ccC---CHHHHHHHHHcCchh
Confidence 111 123445566777763
No 132
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=72.98 E-value=84 Score=31.46 Aligned_cols=132 Identities=17% Similarity=0.106 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHhhcc----Cchhhhcccc-ccCcccHHHHHHhhhcCCCCCCeEEEecCCCCC-CCCHHHHHHHHHHHHH
Q psy965 63 TEAVVETLTLKAIQP----LSEELKEKVL-RGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSG-QYLLETRLHEIELLAK 136 (214)
Q Consensus 63 T~~~I~~lc~eA~~~----f~~~~~~~~~-cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G-~~~~~~K~~E~~~Ai~ 136 (214)
..+-|+.++++|... || .+. |-...-+..+.+..++.| ..+-+. +.|-.. .++.+-=+.-++++.+
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~R-----ifd~lnd~~n~~~~i~~~k~~G--~~~~~~-i~yt~sp~~t~e~~~~~ak~l~~ 165 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFR-----VFDALNDARNLKVAIDAIKSHK--KHAQGA-ICYTTSPVHTLDNFLELGKKLAE 165 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEE-----EcccCcchHHHHHHHHHHHHcC--CEEEEE-EEecCCCCCCHHHHHHHHHHHHH
Confidence 445677788887742 22 111 222222333344444323 222333 345433 4556666666888888
Q ss_pred CCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 137 QKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 137 ~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
.||+.|=+.=-.|.+ ....+++-++++++..+ +-|+.--=+|...-...+..|+++|+|.|-||-+
T Consensus 166 ~Gad~I~IkDtaG~l---~P~~v~~lv~alk~~~~------ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~ 231 (596)
T PRK14042 166 MGCDSIAIKDMAGLL---TPTVTVELYAGLKQATG------LPVHLHSHSTSGLASICHYEAVLAGCNHIDTAIS 231 (596)
T ss_pred cCCCEEEeCCcccCC---CHHHHHHHHHHHHhhcC------CEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccc
Confidence 999987554333332 46778888888887643 2233332333333334456789999999998853
No 133
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=72.79 E-value=55 Score=28.79 Aligned_cols=85 Identities=19% Similarity=0.108 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 199 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~ 199 (214)
|.-..+.=...++..++.|.+-|=+-=.-|-.-+=..++-.+=++.+++.+++ .++||.-++..++ ++..+.++.|.
T Consensus 17 g~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~--~~~vi~gv~~~st-~~~i~~a~~a~ 93 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAG--RVPVIAGVGANST-EEAIELARHAQ 93 (289)
T ss_dssp SSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTT--SSEEEEEEESSSH-HHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccC--ceEEEecCcchhH-HHHHHHHHHHh
Confidence 55556666677889999998875443333333222233333334444555554 4889999999955 66778889999
Q ss_pred HcCCCEEE
Q psy965 200 FAGSDFIK 207 (214)
Q Consensus 200 ~aGaDFIK 207 (214)
++|+|.+=
T Consensus 94 ~~Gad~v~ 101 (289)
T PF00701_consen 94 DAGADAVL 101 (289)
T ss_dssp HTT-SEEE
T ss_pred hcCceEEE
Confidence 99999874
No 134
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=72.47 E-value=19 Score=33.20 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=54.8
Q ss_pred eEEEecCCCCCCCCHHHHHHHHHHHHHCCC--CEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEE-eccCCC
Q psy965 110 CLSQPAGFPSGQYLLETRLHEIELLAKQKV--DEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL-AVGELK 186 (214)
Q Consensus 110 vatV~igFP~G~~~~~~K~~E~~~Ai~~GA--dEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIl-Et~~L~ 186 (214)
++.+++| .......++++.++.|+ |- +++|... |+-+.+.+=|+.+++..++ +-||. |++
T Consensus 87 ~v~~~vg------~~~~~~~~~~~Lv~ag~~~d~--i~iD~a~---gh~~~~~e~I~~ir~~~p~---~~vi~g~V~--- 149 (326)
T PRK05458 87 IASISVG------VKDDEYDFVDQLAAEGLTPEY--ITIDIAH---GHSDSVINMIQHIKKHLPE---TFVIAGNVG--- 149 (326)
T ss_pred EEEEEec------CCHHHHHHHHHHHhcCCCCCE--EEEECCC---CchHHHHHHHHHHHhhCCC---CeEEEEecC---
Confidence 5555444 33445688999999965 85 5667655 8888888889999987764 34566 455
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcC
Q psy965 187 TSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 187 t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
|.++. .-++++|+|+|+-+
T Consensus 150 t~e~a----~~l~~aGad~i~vg 168 (326)
T PRK05458 150 TPEAV----RELENAGADATKVG 168 (326)
T ss_pred CHHHH----HHHHHcCcCEEEEC
Confidence 54544 46678999999944
No 135
>PRK15452 putative protease; Provisional
Probab=72.42 E-value=16 Score=35.00 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=51.2
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhh--cCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHH---HHHHHcC
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVL--NNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCAS---MTAMFAG 202 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~--sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~---~ia~~aG 202 (214)
+...+.|++.|||.|=+-...-.+. .+++.. +|+++.++.|+. .-.||.+-+..+..++++...- .-..+.|
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~--edl~eav~~ah~-~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~g 89 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNH--ENLALGINEAHA-LGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMK 89 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhhhccCCCH--HHHHHHHHHHHH-cCCEEEEEecCcCCHHHHHHHHHHHHHHHhCC
Confidence 4567899999999987744332222 345553 788888888876 5578888888886666664444 3344778
Q ss_pred CCEE
Q psy965 203 SDFI 206 (214)
Q Consensus 203 aDFI 206 (214)
+|-|
T Consensus 90 vDgv 93 (443)
T PRK15452 90 PDAL 93 (443)
T ss_pred CCEE
Confidence 8844
No 136
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.03 E-value=41 Score=28.98 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
+.+.=+.-++..++.|..-+++..|-. + -.+-|+++++..++ .+ .+++-.|-..|.++. +.|+++|
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~~-----~---a~~~i~~l~~~~~~-~p-~~~vGaGTV~~~~~~----~~a~~aG 88 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTNP-----F---ASEVIKELVELYKD-DP-EVLIGAGTVLDAVTA----RLAILAG 88 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCc-----c---HHHHHHHHHHHcCC-CC-CeEEeeeeCCCHHHH----HHHHHcC
Confidence 455555567777788999999998753 2 33456666654432 11 588999988787765 4678999
Q ss_pred CCEEEcCC
Q psy965 203 SDFIKTSG 210 (214)
Q Consensus 203 aDFIKTST 210 (214)
|+||-|+.
T Consensus 89 A~FivsP~ 96 (213)
T PRK06552 89 AQFIVSPS 96 (213)
T ss_pred CCEEECCC
Confidence 99999763
No 137
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=71.40 E-value=60 Score=29.09 Aligned_cols=98 Identities=16% Similarity=0.041 Sum_probs=63.1
Q ss_pred CCCeEEEecCC-CCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC
Q psy965 107 YQPCLSQPAGF-PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 185 (214)
Q Consensus 107 ~v~vatV~igF-P~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L 185 (214)
++-.+.+ +=| ..|.-..+.=...++..++.|++-|=+-=.-|-+-.=..++-.+=++.+++.+++ .+.||.-++.
T Consensus 10 Gv~~a~v-TPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~--~~pvi~gv~~- 85 (303)
T PRK03620 10 GLLSFPV-TPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAG--RVPVIAGAGG- 85 (303)
T ss_pred ceEEeee-CCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC--CCcEEEecCC-
Confidence 4555555 667 5677778888888999999999985332222222222223333334455555554 4678888884
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 186 KTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
++ ++..+.++.+.++|+|.|=-.
T Consensus 86 ~t-~~~i~~~~~a~~~Gadav~~~ 108 (303)
T PRK03620 86 GT-AQAIEYAQAAERAGADGILLL 108 (303)
T ss_pred CH-HHHHHHHHHHHHhCCCEEEEC
Confidence 55 566688889999999987543
No 138
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=71.27 E-value=26 Score=29.65 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=53.3
Q ss_pred HHHHHHCCCCEEEEecChhH-----hhcCChhHHHHHHHHHHHHhcC-CceEEEEEeccCCCCHHHHHHHHHHHHHcCCC
Q psy965 131 IELLAKQKVDEVDIVIQRSL-----VLNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMFAGSD 204 (214)
Q Consensus 131 ~~~Ai~~GAdEID~Vin~~~-----l~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaD 204 (214)
.+.+.+.|++.+.+.+..+. .....+++..+.+..+.+.+.. +..+-+=+|...-.+.+.+.+.++.+.++|+|
T Consensus 73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 152 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGAD 152 (237)
T ss_dssp HHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-S
T ss_pred HHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCe
Confidence 34455699999999988875 2234557777788777777653 24455555555455789999999999999999
Q ss_pred EE
Q psy965 205 FI 206 (214)
Q Consensus 205 FI 206 (214)
-|
T Consensus 153 ~i 154 (237)
T PF00682_consen 153 II 154 (237)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 139
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.24 E-value=28 Score=31.51 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=41.8
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+.|+++|++.|||-| |.=|.+ -+|+++.++..++.. .|--+|=+ |.+++..- ...|+|||-
T Consensus 204 leea~ea~~~gaDiI-~LDn~s----------~e~l~~av~~~~~~~---~leaSGGI-~~~ni~~y----A~tGVD~Is 264 (281)
T PRK06106 204 LDQLEEALELGVDAV-LLDNMT----------PDTLREAVAIVAGRA---ITEASGRI-TPETAPAI----AASGVDLIS 264 (281)
T ss_pred HHHHHHHHHcCCCEE-EeCCCC----------HHHHHHHHHHhCCCc---eEEEECCC-CHHHHHHH----HhcCCCEEE
Confidence 459999999999764 221222 166777776665422 15556667 88888543 367999998
Q ss_pred cCC
Q psy965 208 TSG 210 (214)
Q Consensus 208 TST 210 (214)
||.
T Consensus 265 ~Ga 267 (281)
T PRK06106 265 VGW 267 (281)
T ss_pred eCh
Confidence 764
No 140
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=71.08 E-value=38 Score=29.58 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
+.+.=+.-++.+++.|..-|++..|-.. ..+-|+.+++..+...+ .+++-.|-..|.++. +.++++|
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~--------a~~~i~~l~~~~~~~~p-~~~vGaGTVl~~e~a----~~a~~aG 91 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDF--------AHEVFAELVKYAAKELP-GMILGVGSIVDAATA----ALYIQLG 91 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCc--------HHHHHHHHHHHHHhhCC-CeEEeeEeCcCHHHH----HHHHHcC
Confidence 4455555677788889999999987642 22344444432221012 478888888787666 4578999
Q ss_pred CCEEEcC
Q psy965 203 SDFIKTS 209 (214)
Q Consensus 203 aDFIKTS 209 (214)
|+||-|+
T Consensus 92 A~FiVsP 98 (222)
T PRK07114 92 ANFIVTP 98 (222)
T ss_pred CCEEECC
Confidence 9999976
No 141
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=70.92 E-value=34 Score=26.75 Aligned_cols=70 Identities=14% Similarity=0.098 Sum_probs=42.1
Q ss_pred HHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCC
Q psy965 131 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 131 ~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTST 210 (214)
++.+.+.|+|-|.+=..-... .+...+-++++++.++ .+++++...-....+.. ...+.|+|+|..+.
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~----~~~~~~~~~~i~~~~~---~~~v~~~~~~~~~~~~~-----~~~~~g~d~i~~~~ 144 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL----AREDLELIRELREAVP---DVKVVVKLSPTGELAAA-----AAEEAGVDEVGLGN 144 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH----HHHHHHHHHHHHHhcC---CceEEEEECCCCccchh-----hHHHcCCCEEEEcC
Confidence 678899999998766554432 2333444555555542 25666666544222211 15778999998766
Q ss_pred CC
Q psy965 211 SI 212 (214)
Q Consensus 211 Gf 212 (214)
++
T Consensus 145 ~~ 146 (200)
T cd04722 145 GG 146 (200)
T ss_pred Cc
Confidence 54
No 142
>PLN02321 2-isopropylmalate synthase
Probab=70.63 E-value=52 Score=33.16 Aligned_cols=91 Identities=9% Similarity=-0.043 Sum_probs=61.9
Q ss_pred cCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHH
Q psy965 115 AGFPSGQ-YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 115 igFP~G~-~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~ 193 (214)
.+.|.+. ...+-=+.-++.+.+.||++|-+.=-+|.. ..+.+++-|+.+++..++ .-+++|+.-.=++...-..
T Consensus 229 fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~---~P~~v~~li~~l~~~~~~--~~~v~i~vH~HND~GlAvA 303 (632)
T PLN02321 229 FSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYT---LPSEFGQLIADIKANTPG--IENVIISTHCQNDLGLSTA 303 (632)
T ss_pred EecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCC---CHHHHHHHHHHHHHhcCC--CCCceEEEEeCCCCCHHHH
Confidence 5777555 445555555677788999997555444433 356777777777765553 1257888887655555555
Q ss_pred HHHHHHHcCCCEEEcCC
Q psy965 194 ASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 194 A~~ia~~aGaDFIKTST 210 (214)
-+..|+++||+.|-++-
T Consensus 304 NslaAv~AGA~~Vd~Ti 320 (632)
T PLN02321 304 NTLAGAHAGARQVEVTI 320 (632)
T ss_pred HHHHHHHhCCCEEEEec
Confidence 67889999999998774
No 143
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=70.49 E-value=21 Score=34.27 Aligned_cols=81 Identities=21% Similarity=0.113 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHc
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 201 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~a 201 (214)
++.+-=+.-++++.+.||++|=+.=-.|. .....+++=++++++..+ +-|+.--=+|.-.-..-+..|+++
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~---l~P~~v~~lv~alk~~~~------~pi~~H~Hnt~GlA~AN~laAiea 221 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKDMAGI---LTPYVAYELVKRIKEAVT------VPLEVHTHATSGIAEMTYLKAIEA 221 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC------CeEEEEecCCCCcHHHHHHHHHHc
Confidence 66676677789999999998755522232 246778888888887543 234443333333333445678899
Q ss_pred CCCEEEcCCC
Q psy965 202 GSDFIKTSGS 211 (214)
Q Consensus 202 GaDFIKTSTG 211 (214)
|+|+|-||.+
T Consensus 222 Gad~vD~sv~ 231 (448)
T PRK12331 222 GADIIDTAIS 231 (448)
T ss_pred CCCEEEeecc
Confidence 9999999864
No 144
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=70.38 E-value=31 Score=32.81 Aligned_cols=77 Identities=22% Similarity=0.218 Sum_probs=61.7
Q ss_pred HHHHHHHCCCCEEEEecChhHh-----hcCChhHHHHHHHHHHHHhcCCceEEEE--EeccCCCCHHHHHHHHHHHHHcC
Q psy965 130 EIELLAKQKVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGEKIHMKTI--LAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l-----~sg~~~~v~~Ei~~v~~a~~~~~~lKvI--lEt~~L~t~e~i~~A~~ia~~aG 202 (214)
.++.++..|.++|.++++.+.+ +....+++.+=+....+.+.. .-+.+. .|...-.+.+.+.+.++.++++|
T Consensus 81 ~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~-~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~g 159 (409)
T COG0119 81 DIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARD-HGLEVRFSAEDATRTDPEFLAEVVKAAIEAG 159 (409)
T ss_pred hHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCeEEEEeeccccCCHHHHHHHHHHHHHcC
Confidence 6788899999999999998742 345667777777777777765 348888 88888878888999999999999
Q ss_pred CCEEE
Q psy965 203 SDFIK 207 (214)
Q Consensus 203 aDFIK 207 (214)
++-|-
T Consensus 160 a~~i~ 164 (409)
T COG0119 160 ADRIN 164 (409)
T ss_pred CcEEE
Confidence 99874
No 145
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=70.22 E-value=34 Score=31.42 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEE---------ecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHH
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDI---------VIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENI 191 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~---------Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i 191 (214)
+.+++.|..=++...+.|.+.|++ ..|+|.-...+| +.++++++.+++ ..+-+.+--|.- +.+.+
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~----e~i~~~~~~~~~-~~~~~ll~pg~~-~~~dl 93 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDL----EYIEAAADVVKR-AKVAVLLLPGIG-TVHDL 93 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChH----HHHHHHHHhCCC-CEEEEEeccCcc-CHHHH
Confidence 345777777777777788888888 344443333444 344555555543 444444433322 43433
Q ss_pred HHHHHHHHHcCCCEEEcCC
Q psy965 192 YCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 192 ~~A~~ia~~aGaDFIKTST 210 (214)
+.|.++|+|+|.-.|
T Consensus 94 ----~~a~~~gvd~iri~~ 108 (333)
T TIGR03217 94 ----KAAYDAGARTVRVAT 108 (333)
T ss_pred ----HHHHHCCCCEEEEEe
Confidence 455677888776544
No 146
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=70.16 E-value=72 Score=27.60 Aligned_cols=92 Identities=11% Similarity=0.036 Sum_probs=63.4
Q ss_pred CCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC
Q psy965 106 VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 185 (214)
Q Consensus 106 s~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L 185 (214)
..+++... +++ + +.+.-..+++++++.|.+-+-+=+. ++.+.-.+=++++++++++ -+++.+....=
T Consensus 73 ~~i~~~~~-~~~--~--~~~~~~~~~~~~~~~G~~~~KiKvg------~~~~~d~~~v~~vr~~~g~--~~~l~vDan~~ 139 (265)
T cd03315 73 DRVRVAHM-LGL--G--EPAEVAEEARRALEAGFRTFKLKVG------RDPARDVAVVAALREAVGD--DAELRVDANRG 139 (265)
T ss_pred CceEEEEE-ecC--C--CHHHHHHHHHHHHHCCCCEEEEecC------CCHHHHHHHHHHHHHhcCC--CCEEEEeCCCC
Confidence 35666555 333 2 4566678999999999998887442 2334445567888888875 35778886553
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCC
Q psy965 186 KTSENIYCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aGaDFIKTST 210 (214)
-+.++..+.++...+.|.+||.-+.
T Consensus 140 ~~~~~a~~~~~~l~~~~i~~iEeP~ 164 (265)
T cd03315 140 WTPKQAIRALRALEDLGLDYVEQPL 164 (265)
T ss_pred cCHHHHHHHHHHHHhcCCCEEECCC
Confidence 3778888888888889999997543
No 147
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=70.07 E-value=74 Score=27.70 Aligned_cols=75 Identities=17% Similarity=0.128 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCC--CHHHHHHHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK--TSENIYCASMT 197 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~--t~e~i~~A~~i 197 (214)
|+.+.+.....++.|.+.|||-|=.- +. ++ .+.++.+++.++ .++++| |=.. |.++..+-..-
T Consensus 151 ~~~~~~~~~~~~~~a~~~GADyikt~-----~~-~~----~~~l~~~~~~~~--iPVva~---GGi~~~~~~~~~~~i~~ 215 (258)
T TIGR01949 151 DDRDPELVAHAARLGAELGADIVKTP-----YT-GD----IDSFRDVVKGCP--APVVVA---GGPKTNSDREFLQMIKD 215 (258)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEecc-----CC-CC----HHHHHHHHHhCC--CcEEEe---cCCCCCCHHHHHHHHHH
Confidence 33334444444788999999876642 11 22 233444544443 567665 4443 56777677778
Q ss_pred HHHcCCCEEEcC
Q psy965 198 AMFAGSDFIKTS 209 (214)
Q Consensus 198 a~~aGaDFIKTS 209 (214)
++++|++.|-.+
T Consensus 216 ~~~aGa~Gia~g 227 (258)
T TIGR01949 216 AMEAGAAGVAVG 227 (258)
T ss_pred HHHcCCcEEehh
Confidence 899999976543
No 148
>PRK08444 hypothetical protein; Provisional
Probab=69.49 E-value=39 Score=31.36 Aligned_cols=54 Identities=24% Similarity=0.247 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEE
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKT 178 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKv 178 (214)
.+.+.-++.++++.+.|++|+-+|- |.--.-.++++.+=++.|++..++ .+++.
T Consensus 80 ls~eeI~~~a~~a~~~G~~ei~iv~--G~~p~~~~e~y~e~ir~Ik~~~p~-i~i~a 133 (353)
T PRK08444 80 MSHEEILEIVKNSVKRGIKEVHIVS--AHNPNYGYEWYLEIFKKIKEAYPN-LHVKA 133 (353)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEec--cCCCCCCHHHHHHHHHHHHHHCCC-ceEee
Confidence 4677888899999999999999993 222223678888888888877665 66665
No 149
>PRK06801 hypothetical protein; Provisional
Probab=69.12 E-value=66 Score=29.06 Aligned_cols=105 Identities=12% Similarity=0.064 Sum_probs=66.2
Q ss_pred cccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHh
Q psy965 91 VSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKC 170 (214)
Q Consensus 91 P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~ 170 (214)
+.+.+.++..-+ ..+|||+ +-.=+|.. ...+++|++.|++-|-+ +-+. -.+++-.+.-+++++.|
T Consensus 60 ~~~~~~~~~~a~--~~~vpV~---lHlDH~~~-----~e~i~~Ai~~GftSVm~--D~S~---l~~eeNi~~t~~v~~~a 124 (286)
T PRK06801 60 ESLVEAVKFEAA--RHDIPVV---LNLDHGLH-----FEAVVRALRLGFSSVMF--DGST---LEYEENVRQTREVVKMC 124 (286)
T ss_pred HHHHHHHHHHHH--HCCCCEE---EECCCCCC-----HHHHHHHHHhCCcEEEE--cCCC---CCHHHHHHHHHHHHHHH
Confidence 456666666555 5778744 35666764 45688999999988655 3322 24666667777788888
Q ss_pred cCCceEEEEEeccCCCCHH--------------HHHHHHHHHHHcCCCEEEcCCC
Q psy965 171 GEKIHMKTILAVGELKTSE--------------NIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 171 ~~~~~lKvIlEt~~L~t~e--------------~i~~A~~ia~~aGaDFIKTSTG 211 (214)
+. ..+-|=.|.|.++..+ ....|.+.+.+.|+||+..|-|
T Consensus 125 ~~-~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiG 178 (286)
T PRK06801 125 HA-VGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIG 178 (286)
T ss_pred HH-cCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccC
Confidence 65 2333444555553211 2244556666789999998765
No 150
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.11 E-value=47 Score=28.62 Aligned_cols=69 Identities=14% Similarity=0.315 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCC
Q psy965 124 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGS 203 (214)
Q Consensus 124 ~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGa 203 (214)
.+.=+.-++...+.|.+-|++..+-. .-.+-|+++++..+ .+++-.|-..+.++ .+.++++||
T Consensus 26 ~~~a~~i~~al~~~Gi~~iEitl~~~--------~~~~~I~~l~~~~p-----~~~IGAGTVl~~~~----a~~a~~aGA 88 (212)
T PRK05718 26 LEDAVPLAKALVAGGLPVLEVTLRTP--------AALEAIRLIAKEVP-----EALIGAGTVLNPEQ----LAQAIEAGA 88 (212)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCc--------cHHHHHHHHHHHCC-----CCEEEEeeccCHHH----HHHHHHcCC
Confidence 44445556666777899999995442 33455666665443 25556665556654 467889999
Q ss_pred CEEEcC
Q psy965 204 DFIKTS 209 (214)
Q Consensus 204 DFIKTS 209 (214)
+||-|+
T Consensus 89 ~FivsP 94 (212)
T PRK05718 89 QFIVSP 94 (212)
T ss_pred CEEECC
Confidence 999865
No 151
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=69.00 E-value=43 Score=29.33 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEe-----ccCCCCHHHHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILA-----VGELKTSENIYCA 194 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlE-----t~~L~t~e~i~~A 194 (214)
|..+++.=+..++.|.+.|||-+=+..+ .+++-. -+.+.+-.+++.++++ +-++|= +|.--+.+.+.+.
T Consensus 77 ~~~~~~~~~~~a~~a~~~G~d~v~~~~P-~~~~~~-~~~l~~~~~~ia~~~~----~pi~lYn~P~~~g~~ls~~~~~~L 150 (284)
T cd00950 77 GSNNTAEAIELTKRAEKAGADAALVVTP-YYNKPS-QEGLYAHFKAIAEATD----LPVILYNVPGRTGVNIEPETVLRL 150 (284)
T ss_pred CCccHHHHHHHHHHHHHcCCCEEEEccc-ccCCCC-HHHHHHHHHHHHhcCC----CCEEEEEChhHhCCCCCHHHHHHH
Confidence 3446667788888888888888755444 333332 3666666777776543 222221 3333355666555
Q ss_pred HHHHHHcCCCEEEcCCC
Q psy965 195 SMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 195 ~~ia~~aGaDFIKTSTG 211 (214)
++ .-..-.||-|+|
T Consensus 151 ~~---~p~v~giK~s~~ 164 (284)
T cd00950 151 AE---HPNIVGIKEATG 164 (284)
T ss_pred hc---CCCEEEEEECCC
Confidence 43 356777887765
No 152
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=68.95 E-value=46 Score=29.09 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcC-ChhHHHHHHHHHHHH---hcCCceEEEEEeccCCCCHHHHHHHHHHH
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNN-QWPELFSEVKQMKEK---CGEKIHMKTILAVGELKTSENIYCASMTA 198 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg-~~~~v~~Ei~~v~~a---~~~~~~lKvIlEt~~L~t~e~i~~A~~ia 198 (214)
..+.=+..+++.++.|||-||+=.--.. -| ..-...+|+..+..+ ..+...+.+.|.|..- +..+.|
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDvG~~st~--p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~-------~v~~aa 92 (258)
T cd00423 22 SLDKALEHARRMVEEGADIIDIGGESTR--PGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNA-------EVAEAA 92 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCC--CCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcH-------HHHHHH
Confidence 5677778899999999999998643321 11 111123343333322 2221134466666533 345667
Q ss_pred HHcCCCEEEcCCCCC
Q psy965 199 MFAGSDFIKTSGSIQ 213 (214)
Q Consensus 199 ~~aGaDFIKTSTGf~ 213 (214)
.++|++.|..-||+.
T Consensus 93 L~~g~~iINdis~~~ 107 (258)
T cd00423 93 LKAGADIINDVSGGR 107 (258)
T ss_pred HHhCCCEEEeCCCCC
Confidence 788999999888863
No 153
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.76 E-value=24 Score=31.86 Aligned_cols=126 Identities=20% Similarity=0.112 Sum_probs=63.3
Q ss_pred CCCCCCCHHHHHHHHHHhhc-c--Cchhh-hccccccCccc-----HHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHH
Q psy965 57 TLSGDDTEAVVETLTLKAIQ-P--LSEEL-KEKVLRGFVST-----VWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETR 127 (214)
Q Consensus 57 lL~~~~T~~~I~~lc~eA~~-~--f~~~~-~~~~~cv~P~~-----V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K 127 (214)
.+..-=|.--.+.++.+|.. . .++-+ +...+.+..+| +..+.+.+++.....+|..= +. -
T Consensus 123 i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd~vLikdnHi~~~~i~~av~~~r~~~~~~kIeVE-v~----------~ 191 (278)
T PRK08385 123 VAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSDAILIKDNHLALVPLEEAIRRAKEFSVYKVVEVE-VE----------S 191 (278)
T ss_pred EEEeCCCChhhhHHHHHHHHhcCCcccCCCCcccEEEccCHHHHHHHHHHHHHHHHhCCCCcEEEE-eC----------C
Confidence 34445566677888888874 1 11100 00111233333 33444444432223343322 11 4
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcC---CceEEEEEeccCCCCHHHHHHHHHHHHHcCCC
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE---KIHMKTILAVGELKTSENIYCASMTAMFAGSD 204 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~---~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaD 204 (214)
+.|+++|++.|||- + - +.+.. -++++++++.... +..++ |.-+|=+ |.+++...+ ..|+|
T Consensus 192 leea~~a~~agaDi---I-~----LDn~~---~e~l~~~v~~l~~~~~~~~~~-leaSGGI-~~~ni~~yA----~tGvD 254 (278)
T PRK08385 192 LEDALKAAKAGADI---I-M----LDNMT---PEEIREVIEALKREGLRERVK-IEVSGGI-TPENIEEYA----KLDVD 254 (278)
T ss_pred HHHHHHHHHcCcCE---E-E----ECCCC---HHHHHHHHHHHHhcCcCCCEE-EEEECCC-CHHHHHHHH----HcCCC
Confidence 67999999999982 2 1 22222 2344444443311 01232 4445567 888886533 47999
Q ss_pred EEEcCC
Q psy965 205 FIKTSG 210 (214)
Q Consensus 205 FIKTST 210 (214)
||-||.
T Consensus 255 ~Is~ga 260 (278)
T PRK08385 255 VISLGA 260 (278)
T ss_pred EEEeCh
Confidence 998875
No 154
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=68.26 E-value=56 Score=28.14 Aligned_cols=71 Identities=14% Similarity=0.338 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
+.+.=..-++.+++.|.+-|++..|-. + ..+-|+++++..+ .+++-.|-..|.++. +.++++|
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~-----~---a~~~i~~l~~~~~-----~~~vGAGTVl~~~~a----~~a~~aG 80 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTP-----V---ALDAIRLLRKEVP-----DALIGAGTVLNPEQL----RQAVDAG 80 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCc-----c---HHHHHHHHHHHCC-----CCEEEEEeCCCHHHH----HHHHHcC
Confidence 344445567777888999999998552 3 3344555555433 367777777676665 4677899
Q ss_pred CCEEEcCC
Q psy965 203 SDFIKTSG 210 (214)
Q Consensus 203 aDFIKTST 210 (214)
|+||-|+.
T Consensus 81 A~FivsP~ 88 (204)
T TIGR01182 81 AQFIVSPG 88 (204)
T ss_pred CCEEECCC
Confidence 99998653
No 155
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=68.26 E-value=25 Score=34.06 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=46.3
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
...++..++.|++- +++|.. .|.-..+.+=|+.+++..++ +-+|- |-..|.|+ ++-++++|||+||
T Consensus 229 ~~~a~~Lv~aGvd~--i~~D~a---~~~~~~~~~~i~~ik~~~p~---~~v~a--gnv~t~~~----a~~l~~aGad~v~ 294 (479)
T PRK07807 229 AAKARALLEAGVDV--LVVDTA---HGHQEKMLEALRAVRALDPG---VPIVA--GNVVTAEG----TRDLVEAGADIVK 294 (479)
T ss_pred HHHHHHHHHhCCCE--EEEecc---CCccHHHHHHHHHHHHHCCC---CeEEe--eccCCHHH----HHHHHHcCCCEEE
Confidence 35667777889888 777774 45677888889999987654 45554 22335444 4566789999999
No 156
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=68.11 E-value=36 Score=32.99 Aligned_cols=133 Identities=20% Similarity=0.104 Sum_probs=74.4
Q ss_pred CHHH-HHHHHHHhhcc-CchhhhccccccCcccHHHH---HHhhhcCCCCCCeEEEecCCCCC-CCCHHHHHHHHHHHHH
Q psy965 63 TEAV-VETLTLKAIQP-LSEELKEKVLRGFVSTVWHG---SDNLKTKLVYQPCLSQPAGFPSG-QYLLETRLHEIELLAK 136 (214)
Q Consensus 63 T~~~-I~~lc~eA~~~-f~~~~~~~~~cv~P~~V~~a---~~~L~~~gs~v~vatV~igFP~G-~~~~~~K~~E~~~Ai~ 136 (214)
.++| |+.+++.|... ... -..+.+.+.++.. .+..++.| ..+... ++|=.+ .++.+-=+.-++++.+
T Consensus 92 ~~dDvv~~fv~~A~~~Gvd~----irif~~lnd~~n~~~~i~~ak~~G--~~v~~~-i~~t~~p~~t~e~~~~~a~~l~~ 164 (467)
T PRK14041 92 YADDVVELFVKKVAEYGLDI----IRIFDALNDIRNLEKSIEVAKKHG--AHVQGA-ISYTVSPVHTLEYYLEFARELVD 164 (467)
T ss_pred ccchhhHHHHHHHHHCCcCE----EEEEEeCCHHHHHHHHHHHHHHCC--CEEEEE-EEeccCCCCCHHHHHHHHHHHHH
Confidence 3445 66668887742 210 0113333333333 33333324 333333 333222 4566666667888899
Q ss_pred CCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 137 QKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 137 ~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
.||++|=+.=-.|.+ ....+++-++++++..+ +-|+.-.=+|.-.-..-+..|+++|+|+|-||-+
T Consensus 165 ~Gad~I~i~Dt~G~l---~P~~v~~Lv~~lk~~~~------vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~ 230 (467)
T PRK14041 165 MGVDSICIKDMAGLL---TPKRAYELVKALKKKFG------VPVEVHSHCTTGLASLAYLAAVEAGADMFDTAIS 230 (467)
T ss_pred cCCCEEEECCccCCc---CHHHHHHHHHHHHHhcC------CceEEEecCCCCcHHHHHHHHHHhCCCEEEeecc
Confidence 999998443222332 46778888888887653 2344443333333334456788999999999865
No 157
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=68.11 E-value=74 Score=26.90 Aligned_cols=81 Identities=20% Similarity=0.241 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHH
Q psy965 118 PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMT 197 (214)
Q Consensus 118 P~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~i 197 (214)
+....+++.|+.=++...+.|.++|++-... . .+.-.+.++.+++..+. ..+-+..- . ..+.+.++.+.
T Consensus 7 ~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~--~----~~~~~~~v~~~~~~~~~-~~~~~~~~---~-~~~~i~~~~~~ 75 (237)
T PF00682_consen 7 NGVAFSTEEKLEIAKALDEAGVDYIEVGFPF--A----SEDDFEQVRRLREALPN-ARLQALCR---A-NEEDIERAVEA 75 (237)
T ss_dssp CSTT--HHHHHHHHHHHHHHTTSEEEEEHCT--S----SHHHHHHHHHHHHHHHS-SEEEEEEE---S-CHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCCCEEEEcccc--c----CHHHHHHhhhhhhhhcc-cccceeee---e-hHHHHHHHHHh
Confidence 3455789999999999999999999999221 1 22334445556665554 33333322 3 56778888888
Q ss_pred HHHcCCCEEEcC
Q psy965 198 AMFAGSDFIKTS 209 (214)
Q Consensus 198 a~~aGaDFIKTS 209 (214)
+...|+|+|...
T Consensus 76 ~~~~g~~~i~i~ 87 (237)
T PF00682_consen 76 AKEAGIDIIRIF 87 (237)
T ss_dssp HHHTTSSEEEEE
T ss_pred hHhccCCEEEec
Confidence 889999998654
No 158
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=67.90 E-value=1e+02 Score=28.37 Aligned_cols=84 Identities=14% Similarity=0.025 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 199 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~ 199 (214)
+..+.+.=+..++.+.+.||+.|=++=-.|.+ ..+.+++=++++++..++. +-++.-.=+|...=..-+..|+
T Consensus 139 ~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~---~P~~v~~~v~~l~~~l~~~----i~ig~H~HnnlGla~ANslaAi 211 (337)
T PRK08195 139 HMAPPEKLAEQAKLMESYGAQCVYVVDSAGAL---LPEDVRDRVRALRAALKPD----TQVGFHGHNNLGLGVANSLAAV 211 (337)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCC---CHHHHHHHHHHHHHhcCCC----CeEEEEeCCCcchHHHHHHHHH
Confidence 44566777778888999999998666455543 3667777778887766421 2234433333333334456788
Q ss_pred HcCCCEEEcCC
Q psy965 200 FAGSDFIKTSG 210 (214)
Q Consensus 200 ~aGaDFIKTST 210 (214)
++|+++|-+|-
T Consensus 212 ~aGa~~iD~Sl 222 (337)
T PRK08195 212 EAGATRIDGSL 222 (337)
T ss_pred HhCCCEEEecC
Confidence 99999998874
No 159
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=67.75 E-value=24 Score=31.84 Aligned_cols=137 Identities=17% Similarity=0.200 Sum_probs=85.6
Q ss_pred hhhhhcccCCCCCCCHHHHHHHHHHhhccCchhhhcccc--ccC------cccHHHHHHhhhcC-CCCCCeEEEecCCCC
Q psy965 49 IIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVL--RGF------VSTVWHGSDNLKTK-LVYQPCLSQPAGFPS 119 (214)
Q Consensus 49 ~~~~ID~TlL~~~~T~~~I~~lc~eA~~~f~~~~~~~~~--cv~------P~~V~~a~~~L~~~-gs~v~vatV~igFP~ 119 (214)
++++...|.|.|+.-...+..-+++|... ..+ .+ .+| +.++....+..... .-+.++-.. -||-
T Consensus 81 ivkl~~~t~l~~~~~~~~~~~~ve~ai~l-gad----AV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~--~YpR 153 (265)
T COG1830 81 IVKLNGSTSLSPDPNDQVLVATVEDAIRL-GAD----AVGATVYVGSETEREMIENISQVVEDAHELGMPLVAW--AYPR 153 (265)
T ss_pred EEEeccccccCCCcccceeeeeHHHHHhC-CCc----EEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEE--Eecc
Confidence 46777789999988666666677777742 111 12 222 23333333322211 234554443 7888
Q ss_pred CCCCHH-------HHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCC-CHHHH
Q psy965 120 GQYLLE-------TRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK-TSENI 191 (214)
Q Consensus 120 G~~~~~-------~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~-t~e~i 191 (214)
|...-. .-.+-+|.+.+.|||-|=.- + .|+. +..+.+++.|+ +.|++--|-=. ++++.
T Consensus 154 g~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~--y----tg~~----e~F~~vv~~~~----vpVviaGG~k~~~~~~~ 219 (265)
T COG1830 154 GPAIKDEYHRDADLVGYAARLAAELGADIIKTK--Y----TGDP----ESFRRVVAACG----VPVVIAGGPKTETEREF 219 (265)
T ss_pred CCcccccccccHHHHHHHHHHHHHhcCCeEeec--C----CCCh----HHHHHHHHhCC----CCEEEeCCCCCCChHHH
Confidence 876622 44567889999999975432 2 1232 55666777775 57788777655 78889
Q ss_pred HHHHHHHHHcCCCEE
Q psy965 192 YCASMTAMFAGSDFI 206 (214)
Q Consensus 192 ~~A~~ia~~aGaDFI 206 (214)
.+.+.-++++||--+
T Consensus 220 l~~~~~ai~aGa~G~ 234 (265)
T COG1830 220 LEMVTAAIEAGAMGV 234 (265)
T ss_pred HHHHHHHHHccCcch
Confidence 999999999998644
No 160
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=67.71 E-value=90 Score=27.75 Aligned_cols=97 Identities=14% Similarity=0.018 Sum_probs=62.9
Q ss_pred CCCeEEEecCC-CCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC
Q psy965 107 YQPCLSQPAGF-PSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 185 (214)
Q Consensus 107 ~v~vatV~igF-P~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L 185 (214)
++-.+.+ +=| ..|.-..+.=...++..++.|++-|=+-=.-|-+-+=..++-.+=+..+++.+++ .+.||.-++.
T Consensus 8 Gi~~a~v-TPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g--~~pvi~gv~~- 83 (296)
T TIGR03249 8 GLLSFPV-TPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKG--KVPVYTGVGG- 83 (296)
T ss_pred ceEEeee-CCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCC--CCcEEEecCc-
Confidence 4555555 666 5677778888888999999999985443344433333344333334445555444 4678888884
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEc
Q psy965 186 KTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
++ ++-.+.++.|.++|+|.+=-
T Consensus 84 ~t-~~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 84 NT-SDAIEIARLAEKAGADGYLL 105 (296)
T ss_pred cH-HHHHHHHHHHHHhCCCEEEE
Confidence 45 55557888999999998743
No 161
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=67.59 E-value=81 Score=27.20 Aligned_cols=108 Identities=13% Similarity=0.023 Sum_probs=58.9
Q ss_pred cccHHHHHHhhhcCCCCCCeEEEecC----CCCCCCCHHHHH-------HHHHHHHHCCCCEEEEecChhH-----hhcC
Q psy965 91 VSTVWHGSDNLKTKLVYQPCLSQPAG----FPSGQYLLETRL-------HEIELLAKQKVDEVDIVIQRSL-----VLNN 154 (214)
Q Consensus 91 P~~V~~a~~~L~~~gs~v~vatV~ig----FP~G~~~~~~K~-------~E~~~Ai~~GAdEID~Vin~~~-----l~sg 154 (214)
|..+...++.++ ..++.++++..+ ||.|....+.+. .-++.|.+.|+.-| ++.-+. -...
T Consensus 56 ~~~~~~l~~~l~--~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i--~~~~~~~~~~~~~~~ 131 (283)
T PRK13209 56 REQRLALVNALV--ETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVI--QLAGYDVYYEQANNE 131 (283)
T ss_pred HHHHHHHHHHHH--HcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEE--EECCccccccccHHH
Confidence 444666677777 478888776322 555654433321 23467777899965 222110 0112
Q ss_pred ChhHHHHHHHHHHHHhcCCceEEEEEecc---CCCCHHHHHHHHHHHHHcCCCEE
Q psy965 155 QWPELFSEVKQMKEKCGEKIHMKTILAVG---ELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 155 ~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~---~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
.|+.+.+.++.+.+.+.+ .-+++.+|+. .+.+.+ .+.+++-+.|.+.+
T Consensus 132 ~~~~~~~~l~~l~~~A~~-~GV~i~iE~~~~~~~~~~~---~~~~ll~~v~~~~l 182 (283)
T PRK13209 132 TRRRFIDGLKESVELASR-ASVTLAFEIMDTPFMNSIS---KALGYAHYLNSPWF 182 (283)
T ss_pred HHHHHHHHHHHHHHHHHH-hCCEEEEeecCCcccCCHH---HHHHHHHHhCCCcc
Confidence 234455666666666654 4589999984 333433 44455555454443
No 162
>PRK15108 biotin synthase; Provisional
Probab=67.57 E-value=52 Score=30.25 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHc
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 201 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~a 201 (214)
.+.+.-+..++.+.+.|+++|-+|.--..-..-.++++.+=++.+++ ..+++++-.|.| +.+... ...+|
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~-----~~i~v~~s~G~l-s~e~l~----~LkeA 145 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKA-----MGLETCMTLGTL-SESQAQ----RLANA 145 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHh-----CCCEEEEeCCcC-CHHHHH----HHHHc
Confidence 57788888899999999999866532101111234555555555553 236788888988 555543 44588
Q ss_pred CCCEE
Q psy965 202 GSDFI 206 (214)
Q Consensus 202 GaDFI 206 (214)
|+|.+
T Consensus 146 Gld~~ 150 (345)
T PRK15108 146 GLDYY 150 (345)
T ss_pred CCCEE
Confidence 99944
No 163
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=67.42 E-value=76 Score=31.09 Aligned_cols=91 Identities=13% Similarity=0.002 Sum_probs=60.3
Q ss_pred cCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHH
Q psy965 115 AGFPSGQ-YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 115 igFP~G~-~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~ 193 (214)
.+.|.+. ...+-=+.-++.+.+.||+.|=+.=-.|.+ ....+++-+..+++..++ .-.+.||.-.=++...-..
T Consensus 228 f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~---tP~~v~~lV~~l~~~~~~--~~~i~I~~H~HND~GlAvA 302 (503)
T PLN03228 228 FGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGIN---MPHEFGELVTYVKANTPG--IDDIVFSVHCHNDLGLATA 302 (503)
T ss_pred eccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCC---CHHHHHHHHHHHHHHhcc--ccCceeEecccCCcChHHH
Confidence 5777655 445555677788999999998555444433 456677777788765543 1136677765544333334
Q ss_pred HHHHHHHcCCCEEEcCC
Q psy965 194 ASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 194 A~~ia~~aGaDFIKTST 210 (214)
-+..|+++||++|-||-
T Consensus 303 NslaAi~aGa~~Vd~Tv 319 (503)
T PLN03228 303 NTIAGICAGARQVEVTI 319 (503)
T ss_pred HHHHHHHhCCCEEEEec
Confidence 45678899999999864
No 164
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=67.25 E-value=26 Score=32.04 Aligned_cols=63 Identities=22% Similarity=0.410 Sum_probs=41.9
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEec-cCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV-GELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt-~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
+.|+++|++.|||-| + + -++. -+|+++.++..++ +++||. |=. |.+++..- ...|+|||
T Consensus 218 leea~ea~~~gaDiI-~-------L-Dn~s--~e~~~~av~~~~~----~~~ieaSGGI-~~~ni~~y----A~tGVD~I 277 (296)
T PRK09016 218 LDELDQALKAGADII-M-------L-DNFT--TEQMREAVKRTNG----RALLEVSGNV-TLETLREF----AETGVDFI 277 (296)
T ss_pred HHHHHHHHHcCCCEE-E-------e-CCCC--hHHHHHHHHhhcC----CeEEEEECCC-CHHHHHHH----HhcCCCEE
Confidence 789999999999543 1 1 2222 2777777776553 344554 457 77877543 46799999
Q ss_pred EcCC
Q psy965 207 KTSG 210 (214)
Q Consensus 207 KTST 210 (214)
-||.
T Consensus 278 s~ga 281 (296)
T PRK09016 278 SVGA 281 (296)
T ss_pred EeCc
Confidence 8774
No 165
>PRK06256 biotin synthase; Validated
Probab=67.25 E-value=40 Score=30.28 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHc
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 201 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~a 201 (214)
.+.+.-+.+++.+.+.|+.++-+|..-......+.+.+.+-++.+++. ..+++....|.+ +.+.+. ...++
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~----~~i~~~~~~g~l-~~e~l~----~Lkea 161 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE----TDLEICACLGLL-TEEQAE----RLKEA 161 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhc----CCCcEEecCCcC-CHHHHH----HHHHh
Confidence 577888889999999999988777432211111233455555555542 235667777876 655543 35567
Q ss_pred CCCEE
Q psy965 202 GSDFI 206 (214)
Q Consensus 202 GaDFI 206 (214)
|++.+
T Consensus 162 G~~~v 166 (336)
T PRK06256 162 GVDRY 166 (336)
T ss_pred CCCEE
Confidence 87765
No 166
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=67.22 E-value=34 Score=30.85 Aligned_cols=25 Identities=12% Similarity=-0.130 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEe
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDIV 145 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~V 145 (214)
..+.+.-+.+++++.+.|++|+-++
T Consensus 40 ~ls~eei~~~~~~~~~~G~~ei~l~ 64 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCTEALFT 64 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 5688999999999999999998887
No 167
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=66.90 E-value=87 Score=28.36 Aligned_cols=106 Identities=9% Similarity=0.027 Sum_probs=65.5
Q ss_pred cccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHh
Q psy965 91 VSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKC 170 (214)
Q Consensus 91 P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~ 170 (214)
+.+.+.++..-+ .+++||+- -.=+|.. ...+++|++.|.+-+ .+|-+.+ .+++=.+.-+++++.|
T Consensus 60 ~~~~~~~~~~A~--~~~vPV~l---HLDH~~~-----~e~i~~Ai~~GftSV--M~DgS~l---~~eeNi~~T~~vve~A 124 (283)
T PRK07998 60 DYIYEIVKRHAD--KMDVPVSL---HLDHGKT-----FEDVKQAVRAGFTSV--MIDGAAL---PFEENIAFTKEAVDFA 124 (283)
T ss_pred HHHHHHHHHHHH--HCCCCEEE---ECcCCCC-----HHHHHHHHHcCCCEE--EEeCCCC---CHHHHHHHHHHHHHHH
Confidence 334455555444 46777553 3446753 567889999999884 4454432 4555555667777777
Q ss_pred cCCceEEEEEeccCCCCH-----------HHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 171 GEKIHMKTILAVGELKTS-----------ENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 171 ~~~~~lKvIlEt~~L~t~-----------e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
+. .-+-|=.|.|.+... .+...|.+.+.+.|+|++..|=|-
T Consensus 125 h~-~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt 176 (283)
T PRK07998 125 KS-YGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGN 176 (283)
T ss_pred HH-cCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccc
Confidence 64 223343466655321 134456788889999999988763
No 168
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=66.76 E-value=8.4 Score=30.91 Aligned_cols=109 Identities=13% Similarity=-0.072 Sum_probs=61.7
Q ss_pred cHHHHHHhhhcCCCCCCeEEEecCCCCCC-------CC------HHHHHHHHHHHHHCCCCEEEEecC---h--hHhhcC
Q psy965 93 TVWHGSDNLKTKLVYQPCLSQPAGFPSGQ-------YL------LETRLHEIELLAKQKVDEVDIVIQ---R--SLVLNN 154 (214)
Q Consensus 93 ~V~~a~~~L~~~gs~v~vatV~igFP~G~-------~~------~~~K~~E~~~Ai~~GAdEID~Vin---~--~~l~sg 154 (214)
.....++.++ ..++.++++...+.... .. .+.=...++.|-..|++-+=+... . ......
T Consensus 28 ~~~~~~~~~~--~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~ 105 (213)
T PF01261_consen 28 EAEELRRLLE--DYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEE 105 (213)
T ss_dssp HHHHHHHHHH--HTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHH
T ss_pred HHHHHHHHHH--HcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHH
Confidence 4566777777 46788777622222222 11 344455667777789998544433 1 112234
Q ss_pred ChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHH---HHHHHHHHHcCCC
Q psy965 155 QWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENI---YCASMTAMFAGSD 204 (214)
Q Consensus 155 ~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i---~~A~~ia~~aGaD 204 (214)
+|+.+.+-++.+.+.+.+ .-+++.+|+..-...... ..+-+++.+.+.+
T Consensus 106 ~~~~~~~~l~~l~~~a~~-~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (213)
T PF01261_consen 106 NWERLAENLRELAEIAEE-YGVRIALENHPGPFSETPFSVEEIYRLLEEVDSP 157 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhhhhh-hcceEEEecccCccccchhhHHHHHHHHhhcCCC
Confidence 667777778888877754 458999999866432111 3344455555544
No 169
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=66.55 E-value=47 Score=29.47 Aligned_cols=108 Identities=16% Similarity=0.060 Sum_probs=68.0
Q ss_pred ccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHH
Q psy965 88 RGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMK 167 (214)
Q Consensus 88 cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~ 167 (214)
-.+|.-++..++... ...++++++-++|....+.. ..+..+...|+| || -+|.+-.++++.-.+-++.+.
T Consensus 36 A~~~~vi~~i~~~~~---~~~pvSAtiGDlp~~p~~~~---~aa~~~a~~Gvd---yv-KvGl~g~~~~~~a~e~l~~v~ 105 (235)
T PF04476_consen 36 ALFPWVIREIVAAVP---GRKPVSATIGDLPMKPGTAS---LAALGAAATGVD---YV-KVGLFGCKDYDEAIEALEAVV 105 (235)
T ss_pred CCCHHHHHHHHHHcC---CCCceEEEecCCCCCchHHH---HHHHHHHhcCCC---EE-EEecCCCCCHHHHHHHHHHHH
Confidence 446777777777654 45788888678997654433 233444445654 54 677777889999999999888
Q ss_pred HHhcCCceEEEEEeccCCCCHHHH-----HHHHHHHHHcCCCEE
Q psy965 168 EKCGEKIHMKTILAVGELKTSENI-----YCASMTAMFAGSDFI 206 (214)
Q Consensus 168 ~a~~~~~~lKvIlEt~~L~t~e~i-----~~A~~ia~~aGaDFI 206 (214)
.+..+...=+.++..+|- +.+.+ ...-.++.++|+|-+
T Consensus 106 ~av~~~~~~~~vVAv~yA-D~~r~~~~~p~~l~~~a~~aG~~gv 148 (235)
T PF04476_consen 106 RAVKDFDPDKKVVAVGYA-DAQRVGSISPLDLPEIAAEAGFDGV 148 (235)
T ss_pred HHHhhhCCCcEEEEEEec-chhhhcCCCHHHHHHHHHHcCCCEE
Confidence 776531122334555555 32211 234578889998865
No 170
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=66.29 E-value=39 Score=29.82 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCC
Q psy965 124 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGS 203 (214)
Q Consensus 124 ~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGa 203 (214)
.+.=+..+++.++.|||-||+=... +.-+. .+|+..+.........+.+.|.|. +.+-+..|.+.+ .|+
T Consensus 25 ~d~~~~~A~~~~~~GAdiIDIG~~~-----~~~~~-~ee~~r~v~~i~~~~~~piSIDT~---~~~v~e~aL~~~--~G~ 93 (252)
T cd00740 25 YDEALDVARQQVEGGAQILDLNVDY-----GGLDG-VSAMKWLLNLLATEPTVPLMLDST---NWEVIEAGLKCC--QGK 93 (252)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCC-----CCCCH-HHHHHHHHHHHHHhcCCcEEeeCC---cHHHHHHHHhhC--CCC
Confidence 3455677888899999999975532 22222 346666655443211345677776 323333333222 399
Q ss_pred CEEEcCCCC
Q psy965 204 DFIKTSGSI 212 (214)
Q Consensus 204 DFIKTSTGf 212 (214)
+.|..-+|+
T Consensus 94 ~iINsIs~~ 102 (252)
T cd00740 94 CVVNSINLE 102 (252)
T ss_pred cEEEeCCCC
Confidence 999987775
No 171
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.14 E-value=43 Score=30.45 Aligned_cols=67 Identities=13% Similarity=0.205 Sum_probs=38.5
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+.|+++|++.|||-| .+| +-..+.+++-+..+++. ++ .+ .|.-+|=+ |.+++..- .+.|+|||-
T Consensus 209 l~ea~eal~~gaDiI--~LD-----nm~~e~vk~av~~~~~~-~~--~v-~ieaSGGI-~~~ni~~y----A~tGvD~Is 272 (289)
T PRK07896 209 LEQLDEVLAEGAELV--LLD-----NFPVWQTQEAVQRRDAR-AP--TV-LLESSGGL-TLDTAAAY----AETGVDYLA 272 (289)
T ss_pred HHHHHHHHHcCCCEE--EeC-----CCCHHHHHHHHHHHhcc-CC--CE-EEEEECCC-CHHHHHHH----HhcCCCEEE
Confidence 449999999999763 122 11234444444433321 22 22 23444557 87888543 357999998
Q ss_pred cCC
Q psy965 208 TSG 210 (214)
Q Consensus 208 TST 210 (214)
||.
T Consensus 273 ~ga 275 (289)
T PRK07896 273 VGA 275 (289)
T ss_pred eCh
Confidence 774
No 172
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=65.48 E-value=50 Score=32.30 Aligned_cols=80 Identities=16% Similarity=0.039 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHc
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 201 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~a 201 (214)
...+-=+.-++.+.+.||+.|=+.=-.|.+ ....+++=++.+++. +++.|+.-.=++.-.-...+..|+++
T Consensus 155 ~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~---~P~~v~~li~~l~~~------~~v~i~~H~HND~GlA~ANslaAi~a 225 (524)
T PRK12344 155 ANPEYALATLKAAAEAGADWVVLCDTNGGT---LPHEVAEIVAEVRAA------PGVPLGIHAHNDSGCAVANSLAAVEA 225 (524)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEccCCCCc---CHHHHHHHHHHHHHh------cCCeEEEEECCCCChHHHHHHHHHHh
Confidence 445544555688889999997544223322 355666666666653 26678877665555555567889999
Q ss_pred CCCEEEcCC
Q psy965 202 GSDFIKTSG 210 (214)
Q Consensus 202 GaDFIKTST 210 (214)
|||+|-+|-
T Consensus 226 Ga~~Vd~Tl 234 (524)
T PRK12344 226 GARQVQGTI 234 (524)
T ss_pred CCCEEEEec
Confidence 999999874
No 173
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=65.47 E-value=56 Score=30.45 Aligned_cols=110 Identities=13% Similarity=-0.034 Sum_probs=68.0
Q ss_pred ccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHh-
Q psy965 92 STVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKC- 170 (214)
Q Consensus 92 ~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~- 170 (214)
+=+.-.++.|+. .....++|. + -|.|.-..+.=..-+++.+..|+ |.+.+-+.+-+..|-...+=++.+.+++
T Consensus 116 fGi~g~R~~~gv-~~rPli~Ti-~-kp~~gld~~~la~~~~~l~~gGv---D~Ikdde~~ge~~~~~~eER~~~v~~av~ 189 (367)
T cd08205 116 FGIEGLRRLLGV-HDRPLLGTI-I-KPSIGLSPEELAELAYELALGGI---DLIKDDELLADQPYAPFEERVRACMEAVR 189 (367)
T ss_pred CCchhHHHHhCC-CCCCeeeee-e-CCCCCCCHHHHHHHHHHHHhcCC---CeeeccccccCcccCCHHHHHHHHHHHHH
Confidence 344556667764 345567776 3 59877777777778999999885 6777777666665555554444444433
Q ss_pred --cCC-ceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 171 --GEK-IHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 171 --~~~-~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
.+. ...++++-+.-= +.++..+-++.|.++|+|.+=-
T Consensus 190 ~a~~~TG~~~~y~~nit~-~~~e~i~~a~~a~~~Gad~vmv 229 (367)
T cd08205 190 RANEETGRKTLYAPNITG-DPDELRRRADRAVEAGANALLI 229 (367)
T ss_pred HHHHhhCCcceEEEEcCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 210 012333333322 2377777788899999998743
No 174
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=65.12 E-value=37 Score=30.70 Aligned_cols=93 Identities=9% Similarity=0.008 Sum_probs=52.9
Q ss_pred CCeEEEecCCCCCCCCHHHHHHHHHHHHHCC-CCEEEEecChhHh-----hcCChhHHHHHHHHHHHHhcCCceEEEEEe
Q psy965 108 QPCLSQPAGFPSGQYLLETRLHEIELLAKQK-VDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGEKIHMKTILA 181 (214)
Q Consensus 108 v~vatV~igFP~G~~~~~~K~~E~~~Ai~~G-AdEID~Vin~~~l-----~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlE 181 (214)
.-|+++ .|+..+... .-++..-+.| ||-|++=+..... ...+.+.+.+=++++++....+..+|+=
T Consensus 94 pvI~Si-~G~~~~~~~-----~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKls-- 165 (310)
T PRK02506 94 PHFLSV-VGLSPEETH-----TILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLP-- 165 (310)
T ss_pred CEEEEE-EeCcHHHHH-----HHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecC--
Confidence 345566 575554332 2233333456 8887663322122 1224566666667777665433455653
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCEEEcCC
Q psy965 182 VGELKTSENIYCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 182 t~~L~t~e~i~~A~~ia~~aGaDFIKTST 210 (214)
+.+ +..++.+++..+...|+++|.|-.
T Consensus 166 -p~~-~~~~~a~~~~~~~~~g~~~i~~~n 192 (310)
T PRK02506 166 -PYF-DIVHFDQAAAIFNKFPLAFVNCIN 192 (310)
T ss_pred -CCC-CHHHHHHHHHHhCcCceEEEEEec
Confidence 234 557888888888888999887643
No 175
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.02 E-value=67 Score=27.62 Aligned_cols=71 Identities=18% Similarity=0.327 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
+.+.=..-++.+++.|..-|++..|-. + ..+-|+++++..+ .+++-.|-..|.|+. +.|+++|
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp-----~---a~~~I~~l~~~~~-----~~~vGAGTVl~~e~a----~~ai~aG 76 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTP-----A---ALDAIRAVAAEVE-----EAIVGAGTILNAKQF----EDAAKAG 76 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCc-----c---HHHHHHHHHHHCC-----CCEEeeEeCcCHHHH----HHHHHcC
Confidence 344444556777788999999998753 2 3345555665443 478888888676655 5778999
Q ss_pred CCEEEcCC
Q psy965 203 SDFIKTSG 210 (214)
Q Consensus 203 aDFIKTST 210 (214)
|+||-|+.
T Consensus 77 A~FivSP~ 84 (201)
T PRK06015 77 SRFIVSPG 84 (201)
T ss_pred CCEEECCC
Confidence 99999764
No 176
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=64.96 E-value=87 Score=26.58 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=51.2
Q ss_pred eEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEE------ecc
Q psy965 110 CLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL------AVG 183 (214)
Q Consensus 110 vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIl------Et~ 183 (214)
+|+. +-+| ...+.-...++... |||-|.+-+|. +.....+.+.+.+..+++..+ +++|+ |-|
T Consensus 2 i~~~-i~~~---~~~~e~~~~~~~~~--~aD~vElR~D~--~~~~~~~~~~~~~~~lr~~~~----~piI~T~R~~~eGG 69 (225)
T cd00502 2 ICVP-LTGP---DLLEEALSLLELLL--GADAVELRVDL--LEDPSIDDVAEQLSLLRELTP----LPIIFTVRTKSEGG 69 (225)
T ss_pred EEEE-ecCC---CCHHHHHHHHHHhc--CCCEEEEEEee--ccccchHHHHHHHHHHHHhCC----CCEEEEEcccccCC
Confidence 5666 5666 33333333333333 99999999997 222234567777888876554 34444 444
Q ss_pred CCC-CHHHHHHHHHHHHHcCCCEE
Q psy965 184 ELK-TSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 184 ~L~-t~e~i~~A~~ia~~aGaDFI 206 (214)
... ++++-.+.-..+++.|+|||
T Consensus 70 ~~~~~~~~~~~ll~~~~~~~~d~v 93 (225)
T cd00502 70 NFEGSEEEYLELLEEALKLGPDYV 93 (225)
T ss_pred CcCCCHHHHHHHHHHHHHHCCCEE
Confidence 322 44555566778888899997
No 177
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=64.71 E-value=57 Score=30.22 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=53.0
Q ss_pred HHHHHHHHCCCCEEEEecChhHhh----c-----------C----ChhHHHHHHHHHHHHhcCC-ceEEEEE-------e
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVL----N-----------N----QWPELFSEVKQMKEKCGEK-IHMKTIL-------A 181 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~----s-----------g----~~~~v~~Ei~~v~~a~~~~-~~lKvIl-------E 181 (214)
.-|+.|.+.|.|-|.+=-.-|+|+ | | ....+.+=|.+|+++|++. .-+|+=- +
T Consensus 163 ~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~ 242 (362)
T PRK10605 163 QAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVD 242 (362)
T ss_pred HHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCC
Confidence 346788889999999977766655 2 1 1234445567888888762 2334321 2
Q ss_pred ccCCCCHHH-HHHHHHHHHHcCCCEEEcCCC
Q psy965 182 VGELKTSEN-IYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 182 t~~L~t~e~-i~~A~~ia~~aGaDFIKTSTG 211 (214)
.| + +.++ -...+....++|.|||-.|.|
T Consensus 243 ~G-~-~~~e~~~~~~~~L~~~giD~i~vs~~ 271 (362)
T PRK10605 243 NG-P-NEEADALYLIEQLGKRGIAYLHMSEP 271 (362)
T ss_pred CC-C-CHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 22 3 4455 456677778899999998876
No 178
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=64.64 E-value=14 Score=29.56 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=49.4
Q ss_pred HHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEE-----EEEeccCCC------C------HHHHHHH
Q psy965 132 ELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMK-----TILAVGELK------T------SENIYCA 194 (214)
Q Consensus 132 ~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lK-----vIlEt~~L~------t------~e~i~~A 194 (214)
+.+.+.|.+-|++......-.. ....++.++++.+.. .-++ .-....... + .+.+.++
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~----~~~~~~~~~~~~~~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 76 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWD----EKDDEAEELRRLLED-YGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKA 76 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHT----HHHHHHHHHHHHHHH-TTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccc----cchHHHHHHHHHHHH-cCCeEEEEecccccccccccccCcchhhHHHHHHHHHH
Confidence 5678899999999987753322 115666666666643 2233 222222210 1 5678899
Q ss_pred HHHHHHcCCCEEEcCCC
Q psy965 195 SMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 195 ~~ia~~aGaDFIKTSTG 211 (214)
+++|...|++++.+..|
T Consensus 77 i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 77 IDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHTBSEEEEECT
T ss_pred HHHHHHhCCCceeecCc
Confidence 99999999999999987
No 179
>PRK06852 aldolase; Validated
Probab=64.60 E-value=85 Score=28.78 Aligned_cols=93 Identities=14% Similarity=-0.001 Sum_probs=64.0
Q ss_pred CCCCCeEEEecCCCCCCC-----CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEE
Q psy965 105 LVYQPCLSQPAGFPSGQY-----LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTI 179 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~-----~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvI 179 (214)
.-++++-.. -||.|.. ..+.-..-+|.|.++|||=|=.-......+ |+- +.++.++++|++ +.|+
T Consensus 165 ~~GlPll~~--~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~-g~~----e~f~~vv~~~g~---vpVv 234 (304)
T PRK06852 165 KHGLIAVLW--IYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGA-NPA----ELFKEAVLAAGR---TKVV 234 (304)
T ss_pred HhCCcEEEE--eeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCC-CCH----HHHHHHHHhCCC---CcEE
Confidence 356776665 5999963 235666778999999999876554321010 222 455557777854 5788
Q ss_pred EeccCCCCHHHHHHHHHHHHH-cCCCEEE
Q psy965 180 LAVGELKTSENIYCASMTAMF-AGSDFIK 207 (214)
Q Consensus 180 lEt~~L~t~e~i~~A~~ia~~-aGaDFIK 207 (214)
+.-|-=.+++++.+.++-+++ +|+.-|-
T Consensus 235 iaGG~k~~~~e~L~~v~~ai~~aGa~Gv~ 263 (304)
T PRK06852 235 CAGGSSTDPEEFLKQLYEQIHISGASGNA 263 (304)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHcCCceee
Confidence 888877677888899999988 9987653
No 180
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=64.34 E-value=1e+02 Score=27.22 Aligned_cols=87 Identities=21% Similarity=0.127 Sum_probs=57.9
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHH
Q psy965 115 AGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCA 194 (214)
Q Consensus 115 igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A 194 (214)
+=|=.|.-..+.=...+++.++.|++-|=+-=..|-+-+=..++-.+=++.+++.++ +||.-+|..++ ++..+.
T Consensus 10 TPf~~g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-----~vi~gvg~~~~-~~ai~~ 83 (279)
T cd00953 10 TPFTGNKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-----KVIFQVGSLNL-EESIEL 83 (279)
T ss_pred cCcCCCCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-----CEEEEeCcCCH-HHHHHH
Confidence 455447777777778899999999998544333333333333443344444555442 37888998844 666688
Q ss_pred HHHHHHcCCCEEE
Q psy965 195 SMTAMFAGSDFIK 207 (214)
Q Consensus 195 ~~ia~~aGaDFIK 207 (214)
++.|.++|+|.|=
T Consensus 84 a~~a~~~Gad~v~ 96 (279)
T cd00953 84 ARAAKSFGIYAIA 96 (279)
T ss_pred HHHHHHcCCCEEE
Confidence 8999999999875
No 181
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=63.99 E-value=59 Score=27.72 Aligned_cols=110 Identities=13% Similarity=0.013 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHhhcc-CchhhhccccccCcccHHHHHHhhhcCCCCCC--eEEEecCCCCCCCCHHHHHHHHHHHHHC
Q psy965 61 DDTEAVVETLTLKAIQP-LSEELKEKVLRGFVSTVWHGSDNLKTKLVYQP--CLSQPAGFPSGQYLLETRLHEIELLAKQ 137 (214)
Q Consensus 61 ~~T~~~I~~lc~eA~~~-f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~--vatV~igFP~G~~~~~~K~~E~~~Ai~~ 137 (214)
..+.++..+.++.+.+. ++.. ..-.-.|...+..++.-++.+..+. .+|| .-..+++.|++.
T Consensus 18 ~~~~~~~~~~~~a~~~gGi~~i---Evt~~~~~~~~~i~~l~~~~~~~~~iGaGTV------------~~~~~~~~a~~a 82 (206)
T PRK09140 18 GITPDEALAHVGALIEAGFRAI---EIPLNSPDPFDSIAALVKALGDRALIGAGTV------------LSPEQVDRLADA 82 (206)
T ss_pred CCCHHHHHHHHHHHHHCCCCEE---EEeCCCccHHHHHHHHHHHcCCCcEEeEEec------------CCHHHHHHHHHc
Confidence 45888889998888863 3300 0001245544433322222222222 2233 234588999999
Q ss_pred CCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 138 KVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 138 GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
||+= ++ ++.++. |+.. +|.. ..+-++..+ . |.+|+.+ |.+.|+||||-
T Consensus 83 GA~f---iv------sp~~~~---~v~~---~~~~-~~~~~~~G~--~-t~~E~~~----A~~~Gad~vk~ 130 (206)
T PRK09140 83 GGRL---IV------TPNTDP---EVIR---RAVA-LGMVVMPGV--A-TPTEAFA----ALRAGAQALKL 130 (206)
T ss_pred CCCE---EE------CCCCCH---HHHH---HHHH-CCCcEEccc--C-CHHHHHH----HHHcCCCEEEE
Confidence 9953 32 344433 2222 2222 234555553 3 6677754 55789999994
No 182
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=63.93 E-value=57 Score=31.83 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEecc---CCCCHHHHHHHHHHHHH
Q psy965 124 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVG---ELKTSENIYCASMTAMF 200 (214)
Q Consensus 124 ~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~---~L~t~e~i~~A~~ia~~ 200 (214)
-+.+.+-.+.+++.|++-||+=++.. +.+.+.+ ...++ ...|+|+-.- .-.+.+++....+-+.+
T Consensus 96 ~~~~~~ll~~~~~~~~d~iDiEl~~~-------~~~~~~~----~~~~~-~~~~vI~S~H~f~~tP~~~el~~~~~~~~~ 163 (529)
T PLN02520 96 ENKRQDALRLAMELGADYVDVELKVA-------HEFINSI----SGKKP-EKCKVIVSSHNYENTPSVEELGNLVARIQA 163 (529)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCCc-------hhHHHHH----Hhhhh-cCCEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 34555556788999999999855431 1233333 33332 3579998422 22345777777777788
Q ss_pred cCCCEEEcCC
Q psy965 201 AGSDFIKTSG 210 (214)
Q Consensus 201 aGaDFIKTST 210 (214)
.|||++|--+
T Consensus 164 ~gaDi~Kia~ 173 (529)
T PLN02520 164 TGADIVKIAT 173 (529)
T ss_pred hCCCEEEEec
Confidence 8999999643
No 183
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=63.93 E-value=1.1e+02 Score=27.50 Aligned_cols=93 Identities=16% Similarity=0.076 Sum_probs=64.2
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEec--
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV-- 182 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt-- 182 (214)
+..++|.+- .|...|+.=++.++.|-+.|||-|=+|.++ +.+ ...+.+++..+++.++++ .+ +||=.
T Consensus 71 ~grvpviaG-----~g~~~t~eai~lak~a~~~Gad~il~v~Py-Y~k-~~~~gl~~hf~~ia~a~~--lP--vilYN~P 139 (299)
T COG0329 71 GGRVPVIAG-----VGSNSTAEAIELAKHAEKLGADGILVVPPY-YNK-PSQEGLYAHFKAIAEAVD--LP--VILYNIP 139 (299)
T ss_pred CCCCcEEEe-----cCCCcHHHHHHHHHHHHhcCCCEEEEeCCC-CcC-CChHHHHHHHHHHHHhcC--CC--EEEEeCc
Confidence 345655554 278889999999999999999998555444 444 458899999999999884 22 44422
Q ss_pred ---cCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 183 ---GELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 183 ---~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
+.--+.|.+.+.++ .-..--||=|||
T Consensus 140 ~~tg~~l~~e~i~~la~---~~nivgiKd~~g 168 (299)
T COG0329 140 SRTGVDLSPETIARLAE---HPNIVGVKDSSG 168 (299)
T ss_pred cccCCCCCHHHHHHHhc---CCCEEEEEeCCc
Confidence 33226666655444 557777887776
No 184
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=63.83 E-value=26 Score=31.72 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=41.8
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcC-CceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
+.|+++|++.|||-|= ++ ++. .++++++++..+. ...+ .|.-.|=. |.+++... ...|+|+|
T Consensus 206 leea~eA~~~GaD~I~--LD-------n~~--~e~l~~av~~~~~~~~~i-~leAsGGI-t~~ni~~y----a~tGvD~I 268 (288)
T PRK07428 206 LEQVQEALEYGADIIM--LD-------NMP--VDLMQQAVQLIRQQNPRV-KIEASGNI-TLETIRAV----AETGVDYI 268 (288)
T ss_pred HHHHHHHHHcCCCEEE--EC-------CCC--HHHHHHHHHHHHhcCCCe-EEEEECCC-CHHHHHHH----HHcCCCEE
Confidence 6799999999997641 12 221 2555555554431 0123 25555667 77777433 47899999
Q ss_pred EcCCCC
Q psy965 207 KTSGSI 212 (214)
Q Consensus 207 KTSTGf 212 (214)
-||+-+
T Consensus 269 svgsl~ 274 (288)
T PRK07428 269 SSSAPI 274 (288)
T ss_pred EEchhh
Confidence 988643
No 185
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=63.73 E-value=66 Score=30.08 Aligned_cols=82 Identities=20% Similarity=0.196 Sum_probs=58.0
Q ss_pred HHHHHHHCCCCEEEEecChhHhhcC-------------------ChhHHHHHHHHHHHHhcCCceEEEEEeccCC-----
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVLNN-------------------QWPELFSEVKQMKEKCGEKIHMKTILAVGEL----- 185 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~sg-------------------~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L----- 185 (214)
-++.|.++|.|-|++----|+|++. ....+.+=+.+|++++++..++-+=|-..++
T Consensus 154 AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g 233 (363)
T COG1902 154 AARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGG 233 (363)
T ss_pred HHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCC
Confidence 3677899999999998777776621 2234555668888888864445554444333
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEEcCCC
Q psy965 186 KTSENIYCASMTAMFAG-SDFIKTSGS 211 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aG-aDFIKTSTG 211 (214)
.+.++....++...+.| .|||--|.|
T Consensus 234 ~~~~e~~~la~~L~~~G~~d~i~vs~~ 260 (363)
T COG1902 234 LTIEEAVELAKALEEAGLVDYIHVSEG 260 (363)
T ss_pred CCHHHHHHHHHHHHhcCCccEEEeecc
Confidence 15567778888889999 799998887
No 186
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=63.73 E-value=31 Score=28.27 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=40.9
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
..++.+.+.||+-| ++.... + . +++..+.+.|+. .-+|++++..-..|.++..+ +...|+|||+.
T Consensus 68 ~~~~~~~~aGad~i--~~h~~~---~-~----~~~~~~i~~~~~-~g~~~~v~~~~~~t~~e~~~----~~~~~~d~v~~ 132 (202)
T cd04726 68 LEAEMAFKAGADIV--TVLGAA---P-L----STIKKAVKAAKK-YGKEVQVDLIGVEDPEKRAK----LLKLGVDIVIL 132 (202)
T ss_pred HHHHHHHhcCCCEE--EEEeeC---C-H----HHHHHHHHHHHH-cCCeEEEEEeCCCCHHHHHH----HHHCCCCEEEE
Confidence 36788999999863 222211 1 1 234444444543 34799988333447676653 56679999998
Q ss_pred CCC
Q psy965 209 SGS 211 (214)
Q Consensus 209 STG 211 (214)
..|
T Consensus 133 ~~~ 135 (202)
T cd04726 133 HRG 135 (202)
T ss_pred cCc
Confidence 544
No 187
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=63.39 E-value=1e+02 Score=27.32 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=59.6
Q ss_pred CCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC
Q psy965 106 VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 185 (214)
Q Consensus 106 s~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L 185 (214)
..++|.+- +| . .++.=++.++.|.+.|||-+ ++++..+.+ ..-+.+++-.+++.++++-+..+-= -+|.-
T Consensus 73 g~~pvi~g-v~----~-~t~~ai~~a~~a~~~Gadav-~~~pP~y~~-~s~~~i~~~f~~v~~a~~~pvilYn--~~g~~ 142 (296)
T TIGR03249 73 GKVPVYTG-VG----G-NTSDAIEIARLAEKAGADGY-LLLPPYLIN-GEQEGLYAHVEAVCESTDLGVIVYQ--RDNAV 142 (296)
T ss_pred CCCcEEEe-cC----c-cHHHHHHHHHHHHHhCCCEE-EECCCCCCC-CCHHHHHHHHHHHHhccCCCEEEEe--CCCCC
Confidence 35555554 33 2 37777889999999999998 666665555 3568888999999887752221111 24422
Q ss_pred CCHHHHHHHHHHHH-HcCCCEEEcCCC
Q psy965 186 KTSENIYCASMTAM-FAGSDFIKTSGS 211 (214)
Q Consensus 186 ~t~e~i~~A~~ia~-~aGaDFIKTSTG 211 (214)
-+.+.+.+ ++- .-+.-.||=|+|
T Consensus 143 l~~~~~~~---La~~~~nvvgiKds~~ 166 (296)
T TIGR03249 143 LNADTLER---LADRCPNLVGFKDGIG 166 (296)
T ss_pred CCHHHHHH---HHhhCCCEEEEEeCCC
Confidence 26666644 443 347788887776
No 188
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=63.19 E-value=1.1e+02 Score=27.05 Aligned_cols=148 Identities=9% Similarity=-0.103 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHhhc-cCchhhhccccccCcccHHHHHHhhhcCC-CCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCC
Q psy965 61 DDTEAVVETLTLKAIQ-PLSEELKEKVLRGFVSTVWHGSDNLKTKL-VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQK 138 (214)
Q Consensus 61 ~~T~~~I~~lc~eA~~-~f~~~~~~~~~cv~P~~V~~a~~~L~~~g-s~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~G 138 (214)
..+.++..++++.-.. .+..- -.++..++|..++..++ +.+.+ .+.++.+....-+.|.... ....++.+++.|
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~I-E~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~a~~~g 91 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYI-EGGWPGSNPKDTEFFAR-AKKLKLKHAKLAAFGSTRRAGVKAE--EDPNLQALLEAG 91 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEE-EecCCcCCHHHHHHHHH-HHHcCCCCcEEEEEecccccCCCcc--chHHHHHHHhCC
Confidence 4567777776666443 23200 00011334555554433 22112 2445554422223443321 124577789999
Q ss_pred CCEEEEecChhHh-----hcCChhHHHHHHHHHHHHhcC-CceEEEEEe---ccCCCCHHHHHHHHHHHHHcCCCEE--E
Q psy965 139 VDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILA---VGELKTSENIYCASMTAMFAGSDFI--K 207 (214)
Q Consensus 139 AdEID~Vin~~~l-----~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlE---t~~L~t~e~i~~A~~ia~~aGaDFI--K 207 (214)
+++|.+++..+.. .....++..+.+....+.++. +..+-+-.| .+.-.+.+.+.+.++.+.++|+|-| +
T Consensus 92 ~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~ 171 (273)
T cd07941 92 TPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLC 171 (273)
T ss_pred CCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 9999999876532 333456667777777766643 233334334 2223367777888888899999976 4
Q ss_pred cCCCC
Q psy965 208 TSGSI 212 (214)
Q Consensus 208 TSTGf 212 (214)
-++|.
T Consensus 172 DT~G~ 176 (273)
T cd07941 172 DTNGG 176 (273)
T ss_pred cCCCC
Confidence 55553
No 189
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=63.11 E-value=36 Score=33.84 Aligned_cols=82 Identities=22% Similarity=0.101 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHH
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMF 200 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~ 200 (214)
.++.+-=+.-++++.+.||+.|=+.=-.|. .....+++=++++++..+ +.|+.-.=+|...-..-+..|++
T Consensus 150 ~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~---~~P~~~~~lv~~lk~~~~------~pi~~H~Hnt~Gla~An~laAv~ 220 (592)
T PRK09282 150 VHTIEKYVELAKELEEMGCDSICIKDMAGL---LTPYAAYELVKALKEEVD------LPVQLHSHCTSGLAPMTYLKAVE 220 (592)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCcCCC---cCHHHHHHHHHHHHHhCC------CeEEEEEcCCCCcHHHHHHHHHH
Confidence 466777778889999999998744322232 245677777777776543 23444333333334445667899
Q ss_pred cCCCEEEcCCC
Q psy965 201 AGSDFIKTSGS 211 (214)
Q Consensus 201 aGaDFIKTSTG 211 (214)
||+|+|-||-+
T Consensus 221 aGad~vD~ai~ 231 (592)
T PRK09282 221 AGVDIIDTAIS 231 (592)
T ss_pred hCCCEEEeecc
Confidence 99999998754
No 190
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=62.85 E-value=61 Score=28.59 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=60.4
Q ss_pred CCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEe----c
Q psy965 107 YQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILA----V 182 (214)
Q Consensus 107 ~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlE----t 182 (214)
.++|.+- + |..+++.-+..++.|.+.|||-+=+..++ +++ ..-+.+++-.++|.++++ .++ +|-- |
T Consensus 67 ~~~vi~g-v----~~~s~~~~i~~a~~a~~~Gad~v~v~pP~-y~~-~~~~~i~~~~~~i~~~~~--~pi-~lYn~P~~t 136 (285)
T TIGR00674 67 RVPVIAG-T----GSNATEEAISLTKFAEDVGADGFLVVTPY-YNK-PTQEGLYQHFKAIAEEVD--LPI-ILYNVPSRT 136 (285)
T ss_pred CCeEEEe-C----CCccHHHHHHHHHHHHHcCCCEEEEcCCc-CCC-CCHHHHHHHHHHHHhcCC--CCE-EEEECcHHh
Confidence 4555544 2 66678889999999999999998665554 343 345788888888888774 232 2332 4
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 183 GELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 183 ~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
|.--+.+.+.+.+ ..-..-+||-|+|
T Consensus 137 g~~l~~~~l~~L~---~~~~v~giK~s~~ 162 (285)
T TIGR00674 137 GVSLYPETVKRLA---EEPNIVAIKEATG 162 (285)
T ss_pred cCCCCHHHHHHHH---cCCCEEEEEeCCC
Confidence 4333666665554 3346778898776
No 191
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=62.80 E-value=35 Score=30.05 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=44.0
Q ss_pred HHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
|+.++.+.|||-|=+.... ++ .+++.++.+.|+. .-+-+++|+. +.+++.+ |.++|+|+|=.
T Consensus 125 qi~~a~~~GAD~VlLi~~~---l~------~~~l~~li~~a~~-lGl~~lvevh---~~~E~~~----A~~~gadiIgi 186 (260)
T PRK00278 125 QIYEARAAGADAILLIVAA---LD------DEQLKELLDYAHS-LGLDVLVEVH---DEEELER----ALKLGAPLIGI 186 (260)
T ss_pred HHHHHHHcCCCEEEEEecc---CC------HHHHHHHHHHHHH-cCCeEEEEeC---CHHHHHH----HHHcCCCEEEE
Confidence 7999999999986544333 22 1466777777765 4589999998 4466754 55789999974
No 192
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=62.56 E-value=89 Score=28.24 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=44.0
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChh--HHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWP--ELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF 205 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~--~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDF 205 (214)
+.+++.+.+.|+|.|=+. .+ -..|... .-..-+.++++..+ +-||.+-| +.+.+.+.+ ++..|||.
T Consensus 119 ~~~a~~a~~~GaD~Ivv~-g~--eagGh~g~~~~~~ll~~v~~~~~----iPviaaGG-I~~~~~~~~----al~~GA~g 186 (307)
T TIGR03151 119 VALAKRMEKAGADAVIAE-GM--ESGGHIGELTTMALVPQVVDAVS----IPVIAAGG-IADGRGMAA----AFALGAEA 186 (307)
T ss_pred HHHHHHHHHcCCCEEEEE-Cc--ccCCCCCCCcHHHHHHHHHHHhC----CCEEEECC-CCCHHHHHH----HHHcCCCE
Confidence 467889999999985432 22 1112111 12444555665442 45677766 547665543 33479999
Q ss_pred EEcCCCCC
Q psy965 206 IKTSGSIQ 213 (214)
Q Consensus 206 IKTSTGf~ 213 (214)
|-.+|-|.
T Consensus 187 V~iGt~f~ 194 (307)
T TIGR03151 187 VQMGTRFL 194 (307)
T ss_pred eecchHHh
Confidence 99999774
No 193
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=62.55 E-value=1e+02 Score=26.45 Aligned_cols=107 Identities=9% Similarity=-0.033 Sum_probs=58.5
Q ss_pred cccHHHHHHhhhcCCCCCCeEEEecCCCCCCCC------------HHHHHH----HHHHHHHCCCCEEEEecChhHhhcC
Q psy965 91 VSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYL------------LETRLH----EIELLAKQKVDEVDIVIQRSLVLNN 154 (214)
Q Consensus 91 P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~------------~~~K~~----E~~~Ai~~GAdEID~Vin~~~l~sg 154 (214)
+......++.|+ ..++++++. ++|.|... .+.... -++.|-+.||.-| ++..|....+
T Consensus 39 ~~~~~~~~~~l~--~~gl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga~~i--~~~~g~~~~~ 112 (258)
T PRK09997 39 DYDIEELKQVLA--SNKLEHTLH--NLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGNKKI--NCLVGKTPAG 112 (258)
T ss_pred CCCHHHHHHHHH--HcCCcEEEE--cCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHhCCCEE--EECCCCCCCC
Confidence 345667777777 467887665 55554321 111122 2345667899875 3334432211
Q ss_pred -----ChhHHHHHHHHHHHHhcCCceEEEEEec-c-------CCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 155 -----QWPELFSEVKQMKEKCGEKIHMKTILAV-G-------ELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 155 -----~~~~v~~Ei~~v~~a~~~~~~lKvIlEt-~-------~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
.|+.+.+-+..+.+.+.+ .-+++-+|+ + .+.|.+ .+-++.-+.+.+.|+
T Consensus 113 ~~~~~~~~~~~~~l~~l~~~a~~-~Gv~l~lE~~n~~~~~~~~~~~~~---~~~~ll~~v~~~~v~ 174 (258)
T PRK09997 113 FSSEQIHATLVENLRYAANMLMK-EDILLLIEPINHFDIPGFHLTGTR---QALKLIDDVGCCNLK 174 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-cCCEEEEEeCCCcCCCCCccCCHH---HHHHHHHHhCCCCEE
Confidence 145556666776666654 458899995 1 243433 334455566666554
No 194
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=62.20 E-value=1.4e+02 Score=28.15 Aligned_cols=89 Identities=15% Similarity=0.114 Sum_probs=49.4
Q ss_pred CCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEec---Ch------hHhhcCChhHHHHHHHHHHHHhcCCceEEE
Q psy965 108 QPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVI---QR------SLVLNNQWPELFSEVKQMKEKCGEKIHMKT 178 (214)
Q Consensus 108 v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vi---n~------~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKv 178 (214)
+-|+++ . |..+.+.=..=++..-+.|||-|++=+ |. |.....+.+.+.+=++.+++...-+..+|.
T Consensus 115 pvIaSi-~----~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKL 189 (385)
T PLN02495 115 ILIASI-M----EEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKM 189 (385)
T ss_pred cEEEEc-c----CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEe
Confidence 445555 2 323333333344445567898876644 22 111223444444444667665543356665
Q ss_pred EEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 179 ILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 179 IlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
= +.+ +++...++.|.++|+|.|-
T Consensus 190 s---Pn~---t~i~~ia~aa~~~Gadgi~ 212 (385)
T PLN02495 190 T---PNI---TDITQPARVALKSGCEGVA 212 (385)
T ss_pred C---CCh---hhHHHHHHHHHHhCCCEEE
Confidence 3 334 3477788889999999874
No 195
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=62.13 E-value=33 Score=31.05 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=40.2
Q ss_pred HHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEe-ccCCCCHHHHHHHHHHHHHcCCCE
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILA-VGELKTSENIYCASMTAMFAGSDF 205 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlE-t~~L~t~e~i~~A~~ia~~aGaDF 205 (214)
-+.|+++|++.|||-|=+ .++ --+|++++++..+. ..-++++| +|=. |.+++..- ...|+||
T Consensus 198 tleqa~ea~~agaDiI~L---------Dn~--~~e~l~~av~~~~~-~~~~~~leaSGGI-~~~ni~~y----A~tGvD~ 260 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQL---------DKF--SPQQATEIAQIAPS-LAPHCTLSLAGGI-NLNTLKNY----ADCGIRL 260 (284)
T ss_pred CHHHHHHHHHcCCCEEEE---------CCC--CHHHHHHHHHHhhc-cCCCeEEEEECCC-CHHHHHHH----HhcCCCE
Confidence 467999999999986543 122 23555566655432 11133444 4556 87888543 3569999
Q ss_pred EEcC
Q psy965 206 IKTS 209 (214)
Q Consensus 206 IKTS 209 (214)
|-||
T Consensus 261 Is~g 264 (284)
T PRK06096 261 FITS 264 (284)
T ss_pred EEEC
Confidence 9554
No 196
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=61.99 E-value=1.3e+02 Score=27.59 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=37.5
Q ss_pred CCCEEEE---ecChhHhhcCChhHHH-HHHHHHHHHhc-------CCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 138 KVDEVDI---VIQRSLVLNNQWPELF-SEVKQMKEKCG-------EKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 138 GAdEID~---Vin~~~l~sg~~~~v~-~Ei~~v~~a~~-------~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
.||-|.+ -+|..-...++..... +=++++++... -+..+|+ ++.+ +.+++...++.+.++|+|.|
T Consensus 166 ~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKL---sP~~-~~~~i~~ia~~~~~~GadGi 241 (335)
T TIGR01036 166 LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKI---APDL-TESDLEDIADSLVELGIDGV 241 (335)
T ss_pred hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEe---CCCC-CHHHHHHHHHHHHHhCCcEE
Confidence 4776554 2333233334333333 33566665543 1244454 2334 55678888999999999998
Q ss_pred E
Q psy965 207 K 207 (214)
Q Consensus 207 K 207 (214)
-
T Consensus 242 ~ 242 (335)
T TIGR01036 242 I 242 (335)
T ss_pred E
Confidence 6
No 197
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=61.49 E-value=53 Score=29.23 Aligned_cols=124 Identities=15% Similarity=0.055 Sum_probs=67.3
Q ss_pred ccCCCCCCCHHHHHHHHHHhhc-c--C--chhhhccccccCcccHH------HHHHhhhcC-CCCCCeEEEecCCCCCCC
Q psy965 55 LTTLSGDDTEAVVETLTLKAIQ-P--L--SEELKEKVLRGFVSTVW------HGSDNLKTK-LVYQPCLSQPAGFPSGQY 122 (214)
Q Consensus 55 ~TlL~~~~T~~~I~~lc~eA~~-~--f--~~~~~~~~~cv~P~~V~------~a~~~L~~~-gs~v~vatV~igFP~G~~ 122 (214)
...+..--|.--++.+..+|.. . . |..+. ....+.+.|+. .+.+..++. +...+|..- +.
T Consensus 115 ~~i~~TRKt~Pg~r~l~k~Av~~GGg~~HR~~L~-d~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igve-v~------ 186 (265)
T TIGR00078 115 VRIADTRKTTPGLRLLEKYAVRVGGGDNHRLGLS-DAVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVE-VE------ 186 (265)
T ss_pred eEEEecCCCChhhhHHHHHHHHhcCCcccCCCcc-cceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEE-eC------
Confidence 3445555667778889888875 1 1 21111 11222333322 222222221 233344333 22
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
-++|+++|.+.|||-|=+ =|.+ . ++++++++..+. . + -|.-.|=. |.+++.. .+++|
T Consensus 187 ----t~eea~~A~~~gaDyI~l-d~~~--------~--e~lk~~v~~~~~-~-i-pi~AsGGI-~~~ni~~----~a~~G 243 (265)
T TIGR00078 187 ----SLEEAEEAAEAGADIIML-DNMK--------P--EEIKEAVQLLKG-R-V-LLEASGGI-TLDNLEE----YAETG 243 (265)
T ss_pred ----CHHHHHHHHHcCCCEEEE-CCCC--------H--HHHHHHHHHhcC-C-C-cEEEECCC-CHHHHHH----HHHcC
Confidence 237999999999984322 1221 1 677777765543 1 2 35667778 7788743 35789
Q ss_pred CCEEEcC
Q psy965 203 SDFIKTS 209 (214)
Q Consensus 203 aDFIKTS 209 (214)
+|+|-+|
T Consensus 244 vd~Isvg 250 (265)
T TIGR00078 244 VDVISSG 250 (265)
T ss_pred CCEEEeC
Confidence 9999885
No 198
>PRK01060 endonuclease IV; Provisional
Probab=61.17 E-value=42 Score=29.00 Aligned_cols=80 Identities=8% Similarity=0.037 Sum_probs=50.3
Q ss_pred HHHHHHHCCCCEEEEecChh-HhhcCChhHHHHHHHHHHHHhcCCceEE---EEEeccCC----CC--------HHHHHH
Q psy965 130 EIELLAKQKVDEVDIVIQRS-LVLNNQWPELFSEVKQMKEKCGEKIHMK---TILAVGEL----KT--------SENIYC 193 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~-~l~sg~~~~v~~Ei~~v~~a~~~~~~lK---vIlEt~~L----~t--------~e~i~~ 193 (214)
.++.+.+.|.+-+++.+.-. .+..+. .-.+++.++++++.. ..++ +....++. +. .+.+.+
T Consensus 17 ~l~~~~~~G~d~vEl~~~~p~~~~~~~--~~~~~~~~lk~~~~~-~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~ 93 (281)
T PRK01060 17 AVAEAAEIGANAFMIFTGNPQQWKRKP--LEELNIEAFKAACEK-YGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQ 93 (281)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCcCCC--CCHHHHHHHHHHHHH-cCCCCCceEEecceEecCCCCCHHHHHHHHHHHHH
Confidence 55888889999999876532 222222 233456666666643 2344 44444442 11 234677
Q ss_pred HHHHHHHcCCCEEEcCCCC
Q psy965 194 ASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 194 A~~ia~~aGaDFIKTSTGf 212 (214)
++++|.+.|+.+|..-+|+
T Consensus 94 ~i~~A~~lga~~vv~h~G~ 112 (281)
T PRK01060 94 EIERCAALGAKLLVFHPGS 112 (281)
T ss_pred HHHHHHHcCCCEEEEcCCc
Confidence 8889999999999988885
No 199
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.14 E-value=56 Score=29.44 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=41.2
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
..|+++|++.|||-|=+ =| + =.++++++++..++ .+ .+.-.|=+ |.+++.. ...+|+|+|-
T Consensus 199 leea~eA~~~gaD~I~L-D~--------~--~~e~l~~~v~~~~~--~i-~leAsGGI-t~~ni~~----~a~tGvD~Is 259 (277)
T PRK05742 199 LDELRQALAAGADIVML-DE--------L--SLDDMREAVRLTAG--RA-KLEASGGI-NESTLRV----IAETGVDYIS 259 (277)
T ss_pred HHHHHHHHHcCCCEEEE-CC--------C--CHHHHHHHHHHhCC--CC-cEEEECCC-CHHHHHH----HHHcCCCEEE
Confidence 78999999999987722 12 1 22356666654433 22 24455567 7777753 3478999998
Q ss_pred cCC
Q psy965 208 TSG 210 (214)
Q Consensus 208 TST 210 (214)
||.
T Consensus 260 vg~ 262 (277)
T PRK05742 260 IGA 262 (277)
T ss_pred ECh
Confidence 875
No 200
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.76 E-value=59 Score=29.26 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=43.7
Q ss_pred HHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
-++|+++|.+.|||-|=+ + ++ =.++++++++..+. + .++.-.|=. |.+++. -.+.+|+|+|
T Consensus 197 tleea~~A~~~gaDyI~l--D-------~~--~~e~l~~~~~~~~~--~-i~i~AiGGI-t~~ni~----~~a~~Gvd~I 257 (277)
T PRK08072 197 TEEQVREAVAAGADIIMF--D-------NR--TPDEIREFVKLVPS--A-IVTEASGGI-TLENLP----AYGGTGVDYI 257 (277)
T ss_pred CHHHHHHHHHcCCCEEEE--C-------CC--CHHHHHHHHHhcCC--C-ceEEEECCC-CHHHHH----HHHHcCCCEE
Confidence 347899999999998833 1 11 12667777765543 2 246667778 777774 3456899999
Q ss_pred EcCC
Q psy965 207 KTSG 210 (214)
Q Consensus 207 KTST 210 (214)
-+|.
T Consensus 258 Avg~ 261 (277)
T PRK08072 258 SLGF 261 (277)
T ss_pred EECh
Confidence 8764
No 201
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=60.72 E-value=1.2e+02 Score=26.95 Aligned_cols=94 Identities=9% Similarity=0.058 Sum_probs=62.3
Q ss_pred CCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEE-----
Q psy965 106 VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL----- 180 (214)
Q Consensus 106 s~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIl----- 180 (214)
..++|.+-+ |..+++.-+..++.|.+.|||-+=++.++ +++ ...+.+++-.++|.+++++ . -+++
T Consensus 68 g~~pvi~gv-----~~~~t~~ai~~a~~A~~~Gad~v~v~pP~-y~~-~~~~~l~~~f~~ia~a~~~-l--pv~iYn~P~ 137 (294)
T TIGR02313 68 GRIPFAPGT-----GALNHDETLELTKFAEEAGADAAMVIVPY-YNK-PNQEALYDHFAEVADAVPD-F--PIIIYNIPG 137 (294)
T ss_pred CCCcEEEEC-----CcchHHHHHHHHHHHHHcCCCEEEEcCcc-CCC-CCHHHHHHHHHHHHHhccC-C--CEEEEeCch
Confidence 346554441 45677777889999999999998666555 344 4568899999999988743 2 2333
Q ss_pred eccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 181 AVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 181 Et~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
-||.--+.+.+.+.++ .--..-.||-|+|
T Consensus 138 ~tg~~l~~~~l~~L~~--~~pnv~giK~ss~ 166 (294)
T TIGR02313 138 RAAQEIAPKTMARLRK--DCPNIVGAKESNK 166 (294)
T ss_pred hcCcCCCHHHHHHHHh--hCCCEEEEEeCCC
Confidence 2554446676654442 2257888998887
No 202
>PRK02227 hypothetical protein; Provisional
Probab=60.46 E-value=68 Score=28.51 Aligned_cols=106 Identities=15% Similarity=-0.024 Sum_probs=66.0
Q ss_pred ccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHH
Q psy965 88 RGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMK 167 (214)
Q Consensus 88 cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~ 167 (214)
-.+|.-++..++.+. ...++++++-+||....+ -..-+..+...|+|-| -+|.+-..+++...+-++.+.
T Consensus 36 A~~p~vir~Iv~~~~---~~~pvSAtiGD~p~~p~~---~~~aa~~~a~~GvDyV----KvGl~~~~~~~~~~~~~~~v~ 105 (238)
T PRK02227 36 ANFPWVIREIVAAVP---GRKPVSATIGDVPYKPGT---ISLAALGAAATGADYV----KVGLYGGKTAEEAVEVMKAVV 105 (238)
T ss_pred CCCHHHHHHHHHHhC---CCCCceeeccCCCCCchH---HHHHHHHHHhhCCCEE----EEcCCCCCcHHHHHHHHHHHH
Confidence 557888888888876 346777775778877633 3344556667788743 556566667777777777766
Q ss_pred HHhc----CCceEEEEEeccC-CC--CHHHHHHHHHHHHHcCCCEE
Q psy965 168 EKCG----EKIHMKTILAVGE-LK--TSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 168 ~a~~----~~~~lKvIlEt~~-L~--t~e~i~~A~~ia~~aGaDFI 206 (214)
.+.+ +...+-|.+.-.. +. .+. ..-.++.++|+|.+
T Consensus 106 ~a~~~~~~~~~vVav~yaD~~r~~~~~~~---~l~~~a~~aGf~g~ 148 (238)
T PRK02227 106 RAVKDLDPGKIVVAAGYADAHRVGSVSPL---SLPAIAADAGFDGA 148 (238)
T ss_pred HhhhhcCCCCeEEEEEecccccccCCChH---HHHHHHHHcCCCEE
Confidence 5554 2234555553321 11 222 33567888998864
No 203
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=60.02 E-value=1.1e+02 Score=25.93 Aligned_cols=80 Identities=19% Similarity=0.282 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEE------eccCCC-CHHHHHHH
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL------AVGELK-TSENIYCA 194 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIl------Et~~L~-t~e~i~~A 194 (214)
.+.+.-..+++.+...|||-|.+=+|+- ...+.+.+.+.+..++..++ +.+|+ |-|... ++++-.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~D~vElRlD~l--~~~~~~~~~~~l~~lr~~~~----~piI~T~R~~~eGG~~~~~~~~~~~l 80 (224)
T PF01487_consen 7 STLEELLAELEEAESSGADAVELRLDYL--ENDSAEDISEQLAELRRSLD----LPIIFTVRTKEEGGRFQGSEEEYLEL 80 (224)
T ss_dssp SSHHHHHHHHHHHHHTTTSEEEEEGGGS--TTTSHHHHHHHHHHHHHHCT----SEEEEE--BGGGTSSBSS-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeccc--cccChHHHHHHHHHHHHhCC----CCEEEEecccccCCCCcCCHHHHHHH
Confidence 3455667788888888999999888774 44678889999999998873 23333 234332 55666778
Q ss_pred HHHHHHcCCCEEE
Q psy965 195 SMTAMFAGSDFIK 207 (214)
Q Consensus 195 ~~ia~~aGaDFIK 207 (214)
-+.+.+.|+|||-
T Consensus 81 l~~~~~~~~d~iD 93 (224)
T PF01487_consen 81 LERAIRLGPDYID 93 (224)
T ss_dssp HHHHHHHTSSEEE
T ss_pred HHHHHHcCCCEEE
Confidence 8899999999983
No 204
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=59.74 E-value=1.2e+02 Score=26.65 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHc
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 201 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~a 201 (214)
++.+.-..-++.+.+.|++.|=++=-.|.+ ..+.+++=++.+++..++ -+-|+.-.=++...-..-+..|+++
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~---~P~~v~~lv~~l~~~~~~----~~~i~~H~Hn~~Gla~AN~laA~~a 207 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVDSFGSM---YPEDIKRIISLLRSNLDK----DIKLGFHAHNNLQLALANTLEAIEL 207 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCC---CHHHHHHHHHHHHHhcCC----CceEEEEeCCCccHHHHHHHHHHHc
Confidence 566777777888888999998665444432 466777777777765542 1344555444444444445678899
Q ss_pred CCCEEEcCCC
Q psy965 202 GSDFIKTSGS 211 (214)
Q Consensus 202 GaDFIKTSTG 211 (214)
|+++|-||-+
T Consensus 208 Ga~~vd~s~~ 217 (266)
T cd07944 208 GVEIIDATVY 217 (266)
T ss_pred CCCEEEEecc
Confidence 9999998853
No 205
>PRK08227 autoinducer 2 aldolase; Validated
Probab=59.51 E-value=85 Score=28.13 Aligned_cols=132 Identities=9% Similarity=0.053 Sum_probs=80.2
Q ss_pred cccCCCCCCCHHHHHHHHHHhhccCchhhhccccccCc------ccHHHHHHhhhc-CCCCCCeEEEecCCCCCCC---C
Q psy965 54 DLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLRGFV------STVWHGSDNLKT-KLVYQPCLSQPAGFPSGQY---L 123 (214)
Q Consensus 54 D~TlL~~~~T~~~I~~lc~eA~~~f~~~~~~~~~cv~P------~~V~~a~~~L~~-~gs~v~vatV~igFP~G~~---~ 123 (214)
..|.|.++.....+-.-+++|.+. ..+ .....+|| .++....+.-.. ..-++|+-.+ +|-|.. .
T Consensus 83 ~~t~~~~~~~~~~l~~sVeeAvrl-GAd--AV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~---~prG~~~~~~ 156 (264)
T PRK08227 83 GGNSILKELSNEAVAVDMEDAVRL-NAC--AVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAV---TAVGKDMVRD 156 (264)
T ss_pred CCCCCCCCCCcccceecHHHHHHC-CCC--EEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEE---ecCCCCcCch
Confidence 345666666556666667788752 111 00112333 222222221111 1346776665 598854 3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCC
Q psy965 124 LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGS 203 (214)
Q Consensus 124 ~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGa 203 (214)
.+.-..-+|.|.++|||=|=.- +. . +.+++++++|+ +.|++.-|-=.++++..+.++-++++|+
T Consensus 157 ~~~ia~aaRiaaELGADiVK~~--y~--------~--~~f~~vv~a~~----vPVviaGG~k~~~~~~L~~v~~ai~aGa 220 (264)
T PRK08227 157 ARYFSLATRIAAEMGAQIIKTY--YV--------E--EGFERITAGCP----VPIVIAGGKKLPERDALEMCYQAIDEGA 220 (264)
T ss_pred HHHHHHHHHHHHHHcCCEEecC--CC--------H--HHHHHHHHcCC----CcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 4455677999999999976543 32 1 56777777664 5777777766577889999999999999
Q ss_pred CEEE
Q psy965 204 DFIK 207 (214)
Q Consensus 204 DFIK 207 (214)
.-|-
T Consensus 221 ~Gv~ 224 (264)
T PRK08227 221 SGVD 224 (264)
T ss_pred ceee
Confidence 7664
No 206
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=59.48 E-value=91 Score=26.70 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=55.6
Q ss_pred cHHHHHHhhhcCCCCCCeEEEe---cCCCCCC-CCHH-HH---HH----HHHHHHHCCCCEEEEecChhHh-----hcCC
Q psy965 93 TVWHGSDNLKTKLVYQPCLSQP---AGFPSGQ-YLLE-TR---LH----EIELLAKQKVDEVDIVIQRSLV-----LNNQ 155 (214)
Q Consensus 93 ~V~~a~~~L~~~gs~v~vatV~---igFP~G~-~~~~-~K---~~----E~~~Ai~~GAdEID~Vin~~~l-----~sg~ 155 (214)
.++..++.++ ..++++.+.. .+||.+. .+.+ .+ +. -++.|...||+-| |+..+.. ....
T Consensus 48 ~~~~l~~~~~--~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i--~~~~~~~~~~~~~~~~ 123 (275)
T PRK09856 48 GIKQIKALAQ--TYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYT--LISAAHAGYLTPPNVI 123 (275)
T ss_pred HHHHHHHHHH--HcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEE--EEcCCCCCCCCCHHHH
Confidence 4566666666 4677776651 1344432 1211 11 11 2367778899986 4433211 1123
Q ss_pred hhHHHHHHHHHHHHhcCCceEEEEEecc------CCCCHHHHHHHHHHHHHcCCCEE
Q psy965 156 WPELFSEVKQMKEKCGEKIHMKTILAVG------ELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 156 ~~~v~~Ei~~v~~a~~~~~~lKvIlEt~------~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
|+.+.+=++.+.+.+.+ .-+++.+|+- .+.+.++.. ++..+.|.+.+
T Consensus 124 ~~~~~~~l~~l~~~a~~-~gv~l~iE~~~~~~~~~~~t~~~~~---~l~~~~~~~~v 176 (275)
T PRK09856 124 WGRLAENLSELCEYAEN-IGMDLILEPLTPYESNVVCNANDVL---HALALVPSPRL 176 (275)
T ss_pred HHHHHHHHHHHHHHHHH-cCCEEEEecCCCCcccccCCHHHHH---HHHHHcCCCcc
Confidence 45555556666666655 5689999973 244544443 44444454333
No 207
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=59.00 E-value=47 Score=32.15 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=48.1
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
.-++..++.|++- +|++... |+-+.+.+=++.+++..++ +-||. |-..|.+.. +.++++|+|+||
T Consensus 228 ~ra~~Lv~aGVd~--i~~D~a~---g~~~~~~~~i~~i~~~~~~---~~vi~--g~~~t~~~~----~~l~~~G~d~i~ 292 (475)
T TIGR01303 228 GKAKALLDAGVDV--LVIDTAH---GHQVKMISAIKAVRALDLG---VPIVA--GNVVSAEGV----RDLLEAGANIIK 292 (475)
T ss_pred HHHHHHHHhCCCE--EEEeCCC---CCcHHHHHHHHHHHHHCCC---CeEEE--eccCCHHHH----HHHHHhCCCEEE
Confidence 4566777789988 7888865 7779999999999986654 45666 433365544 456689999999
No 208
>PLN02363 phosphoribosylanthranilate isomerase
Probab=58.58 E-value=35 Score=30.34 Aligned_cols=78 Identities=10% Similarity=0.078 Sum_probs=48.0
Q ss_pred CCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHH-HHHHHHHHHHhcCCceEEEEEeccCCC
Q psy965 108 QPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPEL-FSEVKQMKEKCGEKIHMKTILAVGELK 186 (214)
Q Consensus 108 v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v-~~Ei~~v~~a~~~~~~lKvIlEt~~L~ 186 (214)
+|||.+ ....+++.|.+.|||-|=||.-- .| -.++ .++.+++.+.+++ ..+|.+--+-.-
T Consensus 49 VKICGi------------t~~eda~~a~~~GaD~iGfIf~~---~S--pR~Vs~e~a~~I~~~l~~-~~~~~VgVfv~~- 109 (256)
T PLN02363 49 VKMCGI------------TSARDAAMAVEAGADFIGMILWP---KS--KRSISLSVAKEISQVARE-GGAKPVGVFVDD- 109 (256)
T ss_pred EEECCC------------CcHHHHHHHHHcCCCEEEEecCC---CC--CCcCCHHHHHHHHHhccc-cCccEEEEEeCC-
Confidence 678877 46789999999999999998422 12 2233 4556666666643 223322222222
Q ss_pred CHHHHHHHHHHHHHcCCCEEE
Q psy965 187 TSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 187 t~e~i~~A~~ia~~aGaDFIK 207 (214)
+.++| .+++...|.|+|.
T Consensus 110 ~~~~I---~~~~~~~~ld~VQ 127 (256)
T PLN02363 110 DANTI---LRAADSSDLELVQ 127 (256)
T ss_pred CHHHH---HHHHHhcCCCEEE
Confidence 44555 4556688999886
No 209
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=58.31 E-value=65 Score=28.68 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=43.2
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+.|+++|++.|||-|=+ =|.+ .++++++++..++ .+ -|.-.|=+ |.+++... +.+|+|+|-
T Consensus 192 ~eea~~A~~~gaDyI~l-d~~~----------~e~l~~~~~~~~~--~i-pi~AiGGI-~~~ni~~~----a~~Gvd~Ia 252 (268)
T cd01572 192 LEQLKEALEAGADIIML-DNMS----------PEELREAVALLKG--RV-LLEASGGI-TLENIRAY----AETGVDYIS 252 (268)
T ss_pred HHHHHHHHHcCCCEEEE-CCcC----------HHHHHHHHHHcCC--CC-cEEEECCC-CHHHHHHH----HHcCCCEEE
Confidence 58999999999976532 1221 4778887776543 12 25666778 77877533 478999998
Q ss_pred cCC
Q psy965 208 TSG 210 (214)
Q Consensus 208 TST 210 (214)
+++
T Consensus 253 v~s 255 (268)
T cd01572 253 VGA 255 (268)
T ss_pred EEe
Confidence 875
No 210
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=58.11 E-value=1.5e+02 Score=27.00 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=44.2
Q ss_pred HHHHHHHHHHCCCCEEEEecChhH--hh---cCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHc
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSL--VL---NNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 201 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~--l~---sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~a 201 (214)
...++.+.+ +|+-+++=+|... .. ..+|+.+.+.|+.+++..+-+..+|. +|.=.+. ..+..+.++
T Consensus 131 ~~~~~i~~~--~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~---~g~g~s~----~~a~~l~~~ 201 (326)
T cd02811 131 EARRAVEMI--EADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKE---VGFGISR----ETAKRLADA 201 (326)
T ss_pred HHHHHHHhc--CCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEe---cCCCCCH----HHHHHHHHc
Confidence 344444444 5555555555421 11 22566677899999987754467773 4431132 445677889
Q ss_pred CCCEEEcCC
Q psy965 202 GSDFIKTSG 210 (214)
Q Consensus 202 GaDFIKTST 210 (214)
|+|+|--|.
T Consensus 202 Gvd~I~vsG 210 (326)
T cd02811 202 GVKAIDVAG 210 (326)
T ss_pred CCCEEEECC
Confidence 999998654
No 211
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=58.01 E-value=95 Score=27.19 Aligned_cols=92 Identities=21% Similarity=0.158 Sum_probs=56.5
Q ss_pred CCC-eEEEecCCCCCCC---CHHHHHHHHHHHHHCC-CCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEe
Q psy965 107 YQP-CLSQPAGFPSGQY---LLETRLHEIELLAKQK-VDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILA 181 (214)
Q Consensus 107 ~v~-vatV~igFP~G~~---~~~~K~~E~~~Ai~~G-AdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlE 181 (214)
++| |.|+ =.-+.|.. .-+.+..-.+.+++.| ++-||+=+..+ .+.++.+.+.++. ...|+|+-
T Consensus 74 ~~PiI~T~-R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~----------~~~~~~l~~~~~~-~~~kvI~S 141 (253)
T PRK02412 74 GKPLLFTF-RTAKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSG----------KDVVKEMVAFAHE-HGVKVVLS 141 (253)
T ss_pred CCcEEEEE-CChhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCC----------hHHHHHHHHHHHH-cCCEEEEe
Confidence 444 4555 45555542 3455666678899999 89999865442 1234455544433 34789986
Q ss_pred ccCC---CCHHHHHHHHHHHHHcCCCEEEcCC
Q psy965 182 VGEL---KTSENIYCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 182 t~~L---~t~e~i~~A~~ia~~aGaDFIKTST 210 (214)
--.. .+.+++....+-+...|||.+|-.|
T Consensus 142 ~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~ 173 (253)
T PRK02412 142 YHDFEKTPPKEEIVERLRKMESLGADIVKIAV 173 (253)
T ss_pred eCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 6432 2346666666677788999998543
No 212
>PLN02389 biotin synthase
Probab=58.00 E-value=89 Score=29.28 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhc--CChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHH
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLN--NQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 199 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~s--g~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~ 199 (214)
.+.+.-+.+++++.+.|+++|-+|....-... ..++++.+=++.+++ ..+.+..=.|.+ +.|.+. ...
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~-----~~l~i~~s~G~l-~~E~l~----~Lk 185 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRG-----MGMEVCCTLGML-EKEQAA----QLK 185 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhc-----CCcEEEECCCCC-CHHHHH----HHH
Confidence 57888888999999999999988854321111 124444444444442 234566667766 655543 345
Q ss_pred HcCCCEE
Q psy965 200 FAGSDFI 206 (214)
Q Consensus 200 ~aGaDFI 206 (214)
+||.|.+
T Consensus 186 eAGld~~ 192 (379)
T PLN02389 186 EAGLTAY 192 (379)
T ss_pred HcCCCEE
Confidence 7788865
No 213
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=57.97 E-value=62 Score=31.67 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=53.2
Q ss_pred HHHHHHCCCCEEEEecChh-----HhhcCChhHHHHHHHHHHHHhcCCceEEEEE--e---ccCCCCHHHHHHHHHHHHH
Q psy965 131 IELLAKQKVDEVDIVIQRS-----LVLNNQWPELFSEVKQMKEKCGEKIHMKTIL--A---VGELKTSENIYCASMTAMF 200 (214)
Q Consensus 131 ~~~Ai~~GAdEID~Vin~~-----~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIl--E---t~~L~t~e~i~~A~~ia~~ 200 (214)
++.+++.|++.|-+++..+ ..+....+++.+.+...++.+.. .-++|-+ | .+.-.+.+-+.+.++.+.+
T Consensus 91 ~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~-~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~ 169 (524)
T PRK12344 91 LQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKA-HGREVIFDAEHFFDGYKANPEYALATLKAAAE 169 (524)
T ss_pred HHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH-cCCeEEEccccccccccCCHHHHHHHHHHHHh
Confidence 4667889999999997764 34445667788888777777654 2345444 3 2323356778888999999
Q ss_pred cCCCEEE
Q psy965 201 AGSDFIK 207 (214)
Q Consensus 201 aGaDFIK 207 (214)
+|+|.|-
T Consensus 170 ~Gad~i~ 176 (524)
T PRK12344 170 AGADWVV 176 (524)
T ss_pred CCCCeEE
Confidence 9999863
No 214
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=57.89 E-value=51 Score=28.29 Aligned_cols=82 Identities=6% Similarity=-0.046 Sum_probs=47.7
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC---CC-HH--------HHHHHHH
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL---KT-SE--------NIYCASM 196 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L---~t-~e--------~i~~A~~ 196 (214)
..++.+.+.|.+.+++-..-...-.+. ..-.+++.++++.+.. .-+++.+-.++. .+ ++ .+.++.+
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~ 91 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGV-RLSEETAEKFKEALKE-NNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIK 91 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCC-CCCHHHHHHHHHHHHH-cCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHH
Confidence 356788889999999887665433221 1222344455544432 224444444431 12 22 3455778
Q ss_pred HHHHcCCCEEEcCCCC
Q psy965 197 TAMFAGSDFIKTSGSI 212 (214)
Q Consensus 197 ia~~aGaDFIKTSTGf 212 (214)
+|.+.|+++|-+-+|+
T Consensus 92 ~A~~lGa~~vv~h~g~ 107 (273)
T smart00518 92 RCEELGIKALVFHPGS 107 (273)
T ss_pred HHHHcCCCEEEEcccc
Confidence 8889999998887765
No 215
>PRK00915 2-isopropylmalate synthase; Validated
Probab=57.73 E-value=88 Score=30.43 Aligned_cols=79 Identities=11% Similarity=0.065 Sum_probs=56.7
Q ss_pred HHHHHHH----HCCCCEEEEecChhHhh-----cCChhHHHHHHHHHHHHhcC-CceEEEEEeccCCCCHHHHHHHHHHH
Q psy965 129 HEIELLA----KQKVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTA 198 (214)
Q Consensus 129 ~E~~~Ai----~~GAdEID~Vin~~~l~-----sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt~~L~t~e~i~~A~~ia 198 (214)
..++.++ +.|++.|-+++..+-+. ....+++.+.+...++.+.. +..+-+=.|-+.-.+.+.+.+.++.+
T Consensus 79 ~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~ 158 (513)
T PRK00915 79 KDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAA 158 (513)
T ss_pred HHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHH
Confidence 4566666 67999999998886543 45678888888777777654 23344445556555678888999999
Q ss_pred HHcCCCEEE
Q psy965 199 MFAGSDFIK 207 (214)
Q Consensus 199 ~~aGaDFIK 207 (214)
.++|+|-|-
T Consensus 159 ~~~Ga~~i~ 167 (513)
T PRK00915 159 IDAGATTIN 167 (513)
T ss_pred HHcCCCEEE
Confidence 999999764
No 216
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=57.55 E-value=91 Score=28.91 Aligned_cols=81 Identities=10% Similarity=-0.051 Sum_probs=51.5
Q ss_pred HHHHHHHCCCCEEEEecChhHhh-------------------cCChhHHHHHHHHHHHHhcCCceEEEEEecc-------
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVL-------------------NNQWPELFSEVKQMKEKCGEKIHMKTILAVG------- 183 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~-------------------sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~------- 183 (214)
-|+.|.+.|.|-||+=.--|+|+ .++...+.+=|++|+++++...++++=|-..
T Consensus 155 AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g 234 (370)
T cd02929 155 AALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGG 234 (370)
T ss_pred HHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCC
Confidence 45677889999999855544332 2233556677889999997545566544221
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 184 ELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 184 ~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
.+ +.++....+..+.+. .|||--|.|.
T Consensus 235 ~~-~~~e~~~~~~~l~~~-~D~i~vs~g~ 261 (370)
T cd02929 235 IE-SEGEGVEFVEMLDEL-PDLWDVNVGD 261 (370)
T ss_pred CC-CHHHHHHHHHHHHhh-CCEEEecCCC
Confidence 13 556655666555444 7999888773
No 217
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=57.50 E-value=1.2e+02 Score=26.79 Aligned_cols=84 Identities=11% Similarity=0.045 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEE-----eccCCCCHHHHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL-----AVGELKTSENIYCA 194 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIl-----Et~~L~t~e~i~~A 194 (214)
|..+++.-+..++.|.+.|||-+=++.++ +++ -+-+.+++-.+++.+++++ .+ +|+ -+|.--+.+.+.+.
T Consensus 78 ~~~~~~~ai~~a~~a~~~Gad~v~~~~P~-y~~-~~~~~i~~~~~~v~~a~~~-lp--i~iYn~P~~tg~~l~~~~~~~L 152 (288)
T cd00954 78 GSLNLKESQELAKHAEELGYDAISAITPF-YYK-FSFEEIKDYYREIIAAAAS-LP--MIIYHIPALTGVNLTLEQFLEL 152 (288)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCC-CCC-CCHHHHHHHHHHHHHhcCC-CC--EEEEeCccccCCCCCHHHHHHH
Confidence 45677777889999999999998655554 344 3457888888888887732 22 332 24433366666555
Q ss_pred HHHHHHcCCCEEEcCCC
Q psy965 195 SMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 195 ~~ia~~aGaDFIKTSTG 211 (214)
++ .-..-.||-|+|
T Consensus 153 ~~---~pnivgiK~s~~ 166 (288)
T cd00954 153 FE---IPNVIGVKFTAT 166 (288)
T ss_pred hc---CCCEEEEEeCCC
Confidence 43 446667787766
No 218
>KOG2335|consensus
Probab=57.30 E-value=82 Score=29.67 Aligned_cols=83 Identities=14% Similarity=0.038 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEec----------ChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCH
Q psy965 119 SGQYLLETRLHEIELLAKQKVDEVDIVI----------QRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTS 188 (214)
Q Consensus 119 ~G~~~~~~K~~E~~~Ai~~GAdEID~Vi----------n~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~ 188 (214)
+|....+.=+.-++.+-..+ |+||+=. .+|+++.-+|+.|.+=|.+++.-++.+..+|+=|- .+.
T Consensus 80 f~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~----~d~ 154 (358)
T KOG2335|consen 80 FGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIF----VDL 154 (358)
T ss_pred EcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEec----CcH
Confidence 36666666665555555555 9998632 35788888999999999999988876566777654 234
Q ss_pred HHHHHHHHHHHHcCCCEE
Q psy965 189 ENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 189 e~i~~A~~ia~~aGaDFI 206 (214)
+.=..-++...+||++++
T Consensus 155 ~kTvd~ak~~e~aG~~~l 172 (358)
T KOG2335|consen 155 EKTVDYAKMLEDAGVSLL 172 (358)
T ss_pred HHHHHHHHHHHhCCCcEE
Confidence 555667778999999987
No 219
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=57.02 E-value=80 Score=28.50 Aligned_cols=68 Identities=21% Similarity=0.175 Sum_probs=39.0
Q ss_pred HHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
-+.|++++++.|||-|= ++ .-..+.+.+-+..+++. .+ .+ .|.-+|=. |.+++..- ...|+|||
T Consensus 197 tleea~ea~~~GaDiI~--lD-----n~~~e~l~~~v~~l~~~-~~--~~-~leasGGI-~~~ni~~y----a~~GvD~i 260 (277)
T TIGR01334 197 TIEQALTVLQASPDILQ--LD-----KFTPQQLHHLHERLKFF-DH--IP-TLAAAGGI-NPENIADY----IEAGIDLF 260 (277)
T ss_pred CHHHHHHHHHcCcCEEE--EC-----CCCHHHHHHHHHHHhcc-CC--CE-EEEEECCC-CHHHHHHH----HhcCCCEE
Confidence 56799999999997642 22 12233333333333221 11 12 24445567 77887533 45699999
Q ss_pred EcCC
Q psy965 207 KTSG 210 (214)
Q Consensus 207 KTST 210 (214)
-||.
T Consensus 261 s~ga 264 (277)
T TIGR01334 261 ITSA 264 (277)
T ss_pred EeCc
Confidence 7764
No 220
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=56.99 E-value=1.2e+02 Score=28.00 Aligned_cols=82 Identities=12% Similarity=0.113 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 199 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~ 199 (214)
+..+.+.=+.-++.+.+.|++.|=+.=-.|.+ ..+.+++=++.+++.. .+.||.-.=++...-..-+..|+
T Consensus 136 ~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~---~P~~v~~li~~l~~~~------~~~l~~H~Hnd~GlA~AN~laA~ 206 (363)
T TIGR02090 136 TRTDIDFLIKVFKRAEEAGADRINIADTVGVL---TPQKMEELIKKLKENV------KLPISVHCHNDFGLATANSIAGV 206 (363)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeCCCCcc---CHHHHHHHHHHHhccc------CceEEEEecCCCChHHHHHHHHH
Confidence 34566666666788889999998665444532 4566777777776543 24566665544444444567789
Q ss_pred HcCCCEEEcCC
Q psy965 200 FAGSDFIKTSG 210 (214)
Q Consensus 200 ~aGaDFIKTST 210 (214)
++|+++|-+|-
T Consensus 207 ~aGa~~vd~s~ 217 (363)
T TIGR02090 207 KAGAEQVHVTV 217 (363)
T ss_pred HCCCCEEEEEe
Confidence 99999999874
No 221
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=56.79 E-value=71 Score=29.89 Aligned_cols=85 Identities=19% Similarity=0.207 Sum_probs=54.9
Q ss_pred CCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC
Q psy965 106 VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 185 (214)
Q Consensus 106 s~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L 185 (214)
....+++. +|-.. .-.+-++..++.|+|-| ||+.. .|+-+.+.+-++.+++..++ +-||.-. .
T Consensus 95 ~~l~V~aa-vg~~~------~~~er~~~L~~agvD~i--vID~a---~g~s~~~~~~ik~ik~~~~~---~~viaGN--V 157 (352)
T PF00478_consen 95 GRLLVAAA-VGTRD------DDFERAEALVEAGVDVI--VIDSA---HGHSEHVIDMIKKIKKKFPD---VPVIAGN--V 157 (352)
T ss_dssp SCBCEEEE-EESST------CHHHHHHHHHHTT-SEE--EEE-S---STTSHHHHHHHHHHHHHSTT---SEEEEEE--E
T ss_pred ccceEEEE-ecCCH------HHHHHHHHHHHcCCCEE--Ecccc---CccHHHHHHHHHHHHHhCCC---ceEEecc--c
Confidence 34555655 45432 12445566777899884 78864 57888999999999987653 6677554 3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 186 KTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
.|. .+++-.+++|||.||-.-|
T Consensus 158 ~T~----e~a~~L~~aGad~vkVGiG 179 (352)
T PF00478_consen 158 VTY----EGAKDLIDAGADAVKVGIG 179 (352)
T ss_dssp -SH----HHHHHHHHTT-SEEEESSS
T ss_pred CCH----HHHHHHHHcCCCEEEEecc
Confidence 354 3455688999999997765
No 222
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=56.64 E-value=21 Score=34.31 Aligned_cols=99 Identities=14% Similarity=0.199 Sum_probs=71.5
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHh-cCCceE-EEEE--
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKC-GEKIHM-KTIL-- 180 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~-~~~~~l-KvIl-- 180 (214)
|-.+||=+= +|=.......+.-+..++.|++.|||- |++++ -.||.+.++++|-+-...- |- .|+ -+..
T Consensus 58 gl~tKVNaN-IGtS~~~~d~~~E~~K~~~A~~~GADt---iMDLS--tggdl~~iR~~il~~s~vpvGT-VPiYqa~~~~ 130 (431)
T PRK13352 58 GLRTKVNAN-IGTSSDISDIEEELEKAKVAVKYGADT---IMDLS--TGGDLDEIRRAIIEASPVPVGT-VPIYQAAVEA 130 (431)
T ss_pred CceeEEeee-ecCCCCCCCHHHHHHHHHHHHHcCCCe---Eeecc--CCCCHHHHHHHHHHcCCCCCcC-hhHHHHHHHH
Confidence 556788888 799999999999999999999999985 56666 5689999998876544221 11 111 1112
Q ss_pred -----eccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 181 -----AVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 181 -----Et~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
..-.+ |.+++-.+.+-=.+-|+||+--=.|
T Consensus 131 ~~k~~~~~~m-t~d~~~~~ie~qa~~GVDfmTiHcG 165 (431)
T PRK13352 131 ARKYGSVVDM-TEDDLFDVIEKQAKDGVDFMTIHCG 165 (431)
T ss_pred HhcCCChhhC-CHHHHHHHHHHHHHhCCCEEEEccc
Confidence 22356 6788888888888999999865444
No 223
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=56.56 E-value=61 Score=31.49 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=66.6
Q ss_pred CcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHH------HH---------------HHHHHHHHHCCCCEEEEecCh
Q psy965 90 FVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLE------TR---------------LHEIELLAKQKVDEVDIVIQR 148 (214)
Q Consensus 90 ~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~------~K---------------~~E~~~Ai~~GAdEID~Vin~ 148 (214)
.|...+.+...++ .++.+..+ +..+|.+.-. .| ...++.++++|||-|.+-+-.
T Consensus 239 ~~~~~~~~~~l~~---ag~d~i~i--d~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~ 313 (495)
T PTZ00314 239 RPEDIERAAALIE---AGVDVLVV--DSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGS 313 (495)
T ss_pred CHHHHHHHHHHHH---CCCCEEEE--ecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcC
Confidence 3555666666554 35554444 6667755521 11 157888999999988764433
Q ss_pred hH-----hhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 149 SL-----VLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 149 ~~-----l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
|. ...|---.-..-+..+.++|.. ..+.+|-+-|.- +..++.+| +.+|||+|--+|-|
T Consensus 314 Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~-~~v~vIadGGi~-~~~di~kA----la~GA~~Vm~G~~~ 376 (495)
T PTZ00314 314 GSICITQEVCAVGRPQASAVYHVARYARE-RGVPCIADGGIK-NSGDICKA----LALGADCVMLGSLL 376 (495)
T ss_pred CcccccchhccCCCChHHHHHHHHHHHhh-cCCeEEecCCCC-CHHHHHHH----HHcCCCEEEECchh
Confidence 31 1111111122345556666654 347788888876 77888754 56899998776655
No 224
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=56.43 E-value=99 Score=30.31 Aligned_cols=86 Identities=15% Similarity=0.102 Sum_probs=58.1
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHH
Q psy965 116 GFPSG-QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCA 194 (214)
Q Consensus 116 gFP~G-~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A 194 (214)
.|=.| ....+--+.-++.+.+.||+.|-+.=-.|. -....+++-++.+++..+ .++|+.-.=++...-..-
T Consensus 144 ~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~---~~P~~v~~li~~l~~~~~-----~~~i~vH~HND~GlAvAN 215 (526)
T TIGR00977 144 HFFDGYKANPEYALATLATAQQAGADWLVLCDTNGG---TLPHEISEITTKVKRSLK-----QPQLGIHAHNDSGTAVAN 215 (526)
T ss_pred eeeecccCCHHHHHHHHHHHHhCCCCeEEEecCCCC---cCHHHHHHHHHHHHHhCC-----CCEEEEEECCCCChHHHH
Confidence 45234 355666666777788899999866633332 246677777777776544 235777766554545556
Q ss_pred HHHHHHcCCCEEEcC
Q psy965 195 SMTAMFAGSDFIKTS 209 (214)
Q Consensus 195 ~~ia~~aGaDFIKTS 209 (214)
+..|+++||++|-++
T Consensus 216 slaAv~AGA~~Vd~T 230 (526)
T TIGR00977 216 SLLAVEAGATMVQGT 230 (526)
T ss_pred HHHHHHhCCCEEEEe
Confidence 788999999999876
No 225
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=56.14 E-value=55 Score=27.81 Aligned_cols=76 Identities=12% Similarity=-0.008 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCC------------C--
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK------------T-- 187 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~------------t-- 187 (214)
.+++..+. .+.+.|.+-|++.... +.-.+|++++.+ + .-|++.--.+.+. +
T Consensus 14 ~~l~e~~~---~~~e~G~~~vEl~~~~--------~~~~~~l~~~l~---~-~gl~v~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
T TIGR03234 14 LPFLERFA---AAAQAGFTGVEYLFPY--------DWDAEALKARLA---A-AGLEQVLFNLPAGDWAAGERGIACLPGR 78 (254)
T ss_pred CCHHHHHH---HHHHcCCCEEEecCCc--------cCCHHHHHHHHH---H-cCCeEEEEeCCCCccccCCCccccCCcc
Confidence 34554443 4446799999985421 222455555444 2 3355544332221 1
Q ss_pred ----HHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 188 ----SENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 188 ----~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
.+.+.++.++|.+.|+..|-+.+|+
T Consensus 79 ~~~~~~~~~~~i~~a~~lg~~~i~~~~g~ 107 (254)
T TIGR03234 79 EEEFREGVALAIAYARALGCPQVNCLAGK 107 (254)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECcCC
Confidence 2456678889999999999888875
No 226
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.93 E-value=86 Score=28.42 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=41.5
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+.|+++|++.|||-| |.=|.+ -+|+++.++..++ . ..|.-+|=. |.+++..- ...|+|||-
T Consensus 203 lee~~ea~~~gaDiI-mLDn~s----------~e~l~~av~~~~~-~--~~leaSGgI-~~~ni~~y----A~tGVD~Is 263 (281)
T PRK06543 203 LDQIEPVLAAGVDTI-MLDNFS----------LDDLREGVELVDG-R--AIVEASGNV-NLNTVGAI----ASTGVDVIS 263 (281)
T ss_pred HHHHHHHHhcCCCEE-EECCCC----------HHHHHHHHHHhCC-C--eEEEEECCC-CHHHHHHH----HhcCCCEEE
Confidence 579999999999754 111221 3566666666554 2 245556667 87887543 346999998
Q ss_pred cCC
Q psy965 208 TSG 210 (214)
Q Consensus 208 TST 210 (214)
||.
T Consensus 264 ~ga 266 (281)
T PRK06543 264 VGA 266 (281)
T ss_pred eCc
Confidence 764
No 227
>PRK05926 hypothetical protein; Provisional
Probab=55.69 E-value=28 Score=32.52 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEE--eccC------CCCHHHHHH
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL--AVGE------LKTSENIYC 193 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIl--Et~~------L~t~e~i~~ 193 (214)
.+.+.-+++++++ +.|++||=+|- |.-.+-+++++.+-++.|++..++ .+++.+. |.++ +++ ++
T Consensus 99 ls~eeI~~~a~~a-~~G~~ei~iv~--G~~p~~~~e~~~e~i~~Ik~~~p~-i~i~a~s~~Ei~~~~~~~~~~~-~e--- 170 (370)
T PRK05926 99 YTPDQLVQSIKEN-PSPITETHIVA--GCFPSCNLAYYEELFSKIKQNFPD-LHIKALTAIEYAYLSKLDNLPV-KE--- 170 (370)
T ss_pred CCHHHHHHHHHHH-hcCCCEEEEEe--CcCCCCCHHHHHHHHHHHHHhCCC-eeEEECCHHHHHHHHhhcCCCH-HH---
Confidence 3577778888888 89999999993 544455788888889999987766 6777764 3333 212 22
Q ss_pred HHHHHHHcCCCEEE
Q psy965 194 ASMTAMFAGSDFIK 207 (214)
Q Consensus 194 A~~ia~~aGaDFIK 207 (214)
.-+...+||.|-+.
T Consensus 171 ~l~~LkeAGl~~~~ 184 (370)
T PRK05926 171 VLQTLKIAGLDSIP 184 (370)
T ss_pred HHHHHHHcCcCccC
Confidence 23345567776543
No 228
>PRK07094 biotin synthase; Provisional
Probab=55.24 E-value=1.2e+02 Score=26.92 Aligned_cols=74 Identities=15% Similarity=0.042 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
+.+.-+.+++.+.+.|++++-++---.... +.+.+.+=++.+++. . .+++-+.++.+ +.+.+. ...++|
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~--~~~~l~~l~~~i~~~-~---~l~i~~~~g~~-~~e~l~----~Lk~aG 139 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYY--TDEKIADIIKEIKKE-L---DVAITLSLGER-SYEEYK----AWKEAG 139 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCC--CHHHHHHHHHHHHcc-C---CceEEEecCCC-CHHHHH----HHHHcC
Confidence 677778888888889999877652110000 223333333344332 1 24455666666 544443 445678
Q ss_pred CCEEE
Q psy965 203 SDFIK 207 (214)
Q Consensus 203 aDFIK 207 (214)
+|.+-
T Consensus 140 ~~~v~ 144 (323)
T PRK07094 140 ADRYL 144 (323)
T ss_pred CCEEE
Confidence 88664
No 229
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=55.04 E-value=88 Score=30.68 Aligned_cols=78 Identities=17% Similarity=0.060 Sum_probs=55.4
Q ss_pred HHHHHHHCCCCEEEEecChh-----HhhcCChhHHHHHHHHHHHHhcC-CceEEEEEe---ccCCCCHHHHHHHHHHHHH
Q psy965 130 EIELLAKQKVDEVDIVIQRS-----LVLNNQWPELFSEVKQMKEKCGE-KIHMKTILA---VGELKTSENIYCASMTAMF 200 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~-----~l~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlE---t~~L~t~e~i~~A~~ia~~ 200 (214)
-++.+++.|++.|.+++..+ ..+....+++.+.+...++.+.. +..+-+..| -++-.+.+-+.+.++.+.+
T Consensus 86 ~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~ 165 (526)
T TIGR00977 86 MLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQ 165 (526)
T ss_pred HHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHh
Confidence 35667888999999987664 23445678888888877777654 122334455 4444578889999999999
Q ss_pred cCCCEEE
Q psy965 201 AGSDFIK 207 (214)
Q Consensus 201 aGaDFIK 207 (214)
+|+|-|-
T Consensus 166 aGad~i~ 172 (526)
T TIGR00977 166 AGADWLV 172 (526)
T ss_pred CCCCeEE
Confidence 9999863
No 230
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=55.00 E-value=1.8e+02 Score=27.00 Aligned_cols=96 Identities=19% Similarity=0.192 Sum_probs=57.1
Q ss_pred CCCCCeEEEecCCCCCCC----------CHHHHHHHHHHHHH--CCCCEEEEec--ChhHhhcC--------ChhHHHHH
Q psy965 105 LVYQPCLSQPAGFPSGQY----------LLETRLHEIELLAK--QKVDEVDIVI--QRSLVLNN--------QWPELFSE 162 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~----------~~~~K~~E~~~Ai~--~GAdEID~Vi--n~~~l~sg--------~~~~v~~E 162 (214)
..++++-.-++-||.|.. ..+.-..-+|.+.+ .|||=+=+-. |...+ .| .-++..+-
T Consensus 154 ~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~v-eg~~~~~~~~~~~~~~~~ 232 (340)
T PRK12858 154 ANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFV-EGFDGFEEAYTQEEAFKL 232 (340)
T ss_pred HcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccc-cccccccccccHHHHHHH
Confidence 456775554357998764 23444555677774 8996443333 32222 23 11233344
Q ss_pred HHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 163 VKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 163 i~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
++++.++|+- =-||+--|. +.+...+..+.|+++|+.|-
T Consensus 233 f~~~~~a~~~---P~vvlsgG~--~~~~f~~~l~~A~~aGa~f~ 271 (340)
T PRK12858 233 FREQSDATDL---PFIFLSAGV--SPELFRRTLEFACEAGADFS 271 (340)
T ss_pred HHHHHhhCCC---CEEEECCCC--CHHHHHHHHHHHHHcCCCcc
Confidence 6666666652 235556664 66888999999999999774
No 231
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=54.82 E-value=1e+02 Score=28.37 Aligned_cols=92 Identities=11% Similarity=0.088 Sum_probs=59.6
Q ss_pred CCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC
Q psy965 106 VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 185 (214)
Q Consensus 106 s~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L 185 (214)
.+.++++. .- | |... ...++.|.+.|++.|-+....+ +.+.+.+-+...++ .| ..+-+-++.+..
T Consensus 76 ~~~~~~~l-l~-p-g~~~----~~dl~~a~~~gvd~iri~~~~~-----e~~~~~~~i~~ak~-~G--~~v~~~l~~a~~ 140 (337)
T PRK08195 76 KQAKIAAL-LL-P-GIGT----VDDLKMAYDAGVRVVRVATHCT-----EADVSEQHIGLARE-LG--MDTVGFLMMSHM 140 (337)
T ss_pred CCCEEEEE-ec-c-Cccc----HHHHHHHHHcCCCEEEEEEecc-----hHHHHHHHHHHHHH-CC--CeEEEEEEeccC
Confidence 35666665 21 3 2222 3678999999999988876443 23344444444443 22 456666777777
Q ss_pred CCHHHHHHHHHHHHHcCCCEE--EcCCCC
Q psy965 186 KTSENIYCASMTAMFAGSDFI--KTSGSI 212 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aGaDFI--KTSTGf 212 (214)
.+++.+.+.++.+.++|+|-| +=|.|.
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~ 169 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDSAGA 169 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCCCCC
Confidence 688999999999999999965 445553
No 232
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=54.59 E-value=33 Score=30.24 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=38.2
Q ss_pred cCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 153 NNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 153 sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
||.+..+-+|+.+.++...+ ..+|.--| +.+.|+.+ .+.++|||.|-|.|-|
T Consensus 163 SGa~~~v~~~v~~~~~~~~~---~~LivGGG-Irs~e~A~----~~~~aGAD~IVvGn~i 214 (230)
T PF01884_consen 163 SGAYGPVPEEVIAAVKKLSD---IPLIVGGG-IRSPEQAR----EMAEAGADTIVVGNAI 214 (230)
T ss_dssp TTSSS-HHHHHHHHHHHSSS---SEEEEESS---SHHHHH----HHHCTTSSEEEESCHH
T ss_pred CCCCCCccHHHHHHHHhcCC---ccEEEeCC-cCCHHHHH----HHHHCCCCEEEECCEE
Confidence 78999998999988877654 57888888 65755543 5568999999998854
No 233
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=54.43 E-value=99 Score=29.72 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=59.3
Q ss_pred CCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCC
Q psy965 107 YQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK 186 (214)
Q Consensus 107 ~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~ 186 (214)
+.++.|+ =|....+-+.+++-.+.+++.|+|-||+=.+.+ + +.++.+..+ ++ ..|+|+---..
T Consensus 51 ~~pilT~---R~~~~~~~~~~~~~l~~~~~~~~d~vDiEl~~~-------~---~~~~~l~~~-~~--~~kvI~S~Hdf- 113 (477)
T PRK09310 51 PIPILTW---KKHESCSQAAWIDKMQSLAKLNPNYLDIDKDFP-------K---EALIRIRKL-HP--KIKIILSYHTS- 113 (477)
T ss_pred CCceEEe---ccCccCCHHHHHHHHHHHHHhCCCEEEEEecCC-------H---HHHHHHHHh-CC--CCEEEEEcCCC-
Confidence 4556665 233345667888888899999999999876552 1 234444332 22 47999998877
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcC
Q psy965 187 TSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 187 t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
+.+++....+-+...|+|++|-.
T Consensus 114 ~~~~l~~~~~~~~~~gaDi~Kia 136 (477)
T PRK09310 114 EHEDIIQLYNEMLASAADYYKIA 136 (477)
T ss_pred CcchHHHHHHHHHHcCCCEEEEe
Confidence 44667677778888999999953
No 234
>PRK00915 2-isopropylmalate synthase; Validated
Probab=54.27 E-value=1.3e+02 Score=29.31 Aligned_cols=91 Identities=14% Similarity=0.057 Sum_probs=61.1
Q ss_pred cCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHH
Q psy965 115 AGFPSGQY-LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 115 igFP~G~~-~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~ 193 (214)
.+.|.+.- ..+-=+.-++.+.+.||+.|-+.=-.|.. ..+.+++=++.+++..++ .-++.|+.-.=++...-..
T Consensus 138 f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~---~P~~~~~~i~~l~~~~~~--~~~v~l~~H~HND~GlAvA 212 (513)
T PRK00915 138 FSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGYT---TPEEFGELIKTLRERVPN--IDKAIISVHCHNDLGLAVA 212 (513)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCC---CHHHHHHHHHHHHHhCCC--cccceEEEEecCCCCHHHH
Confidence 46665554 45555555667778999987665444543 467777778888776543 1246688776655555555
Q ss_pred HHHHHHHcCCCEEEcCC
Q psy965 194 ASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 194 A~~ia~~aGaDFIKTST 210 (214)
-+..|+++||+.|-++-
T Consensus 213 NslaAv~aGa~~Vd~Tv 229 (513)
T PRK00915 213 NSLAAVEAGARQVECTI 229 (513)
T ss_pred HHHHHHHhCCCEEEEEe
Confidence 67889999999998764
No 235
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=54.20 E-value=66 Score=30.09 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=47.9
Q ss_pred HHHHHHHHHCC--CCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCE
Q psy965 128 LHEIELLAKQK--VDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF 205 (214)
Q Consensus 128 ~~E~~~Ai~~G--AdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDF 205 (214)
...++..+++| +|- +|||. -.|+-+.+.+.|+.+++..++ +.|+--.-+ |.|. ++.++++|||.
T Consensus 109 ~er~~~L~~a~~~~d~--iviD~---AhGhs~~~i~~ik~ir~~~p~----~~viaGNV~-T~e~----a~~Li~aGAD~ 174 (343)
T TIGR01305 109 LEKMTSILEAVPQLKF--ICLDV---ANGYSEHFVEFVKLVREAFPE----HTIMAGNVV-TGEM----VEELILSGADI 174 (343)
T ss_pred HHHHHHHHhcCCCCCE--EEEEC---CCCcHHHHHHHHHHHHhhCCC----CeEEEeccc-CHHH----HHHHHHcCCCE
Confidence 34555666664 665 56787 468999999999999987764 344444445 6443 45777899999
Q ss_pred EEcC
Q psy965 206 IKTS 209 (214)
Q Consensus 206 IKTS 209 (214)
||-|
T Consensus 175 ikVg 178 (343)
T TIGR01305 175 VKVG 178 (343)
T ss_pred EEEc
Confidence 9966
No 236
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=53.47 E-value=46 Score=31.25 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=38.9
Q ss_pred HHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
.++.|.+.||+-|=+.-. .+... +..+++.|.. .-+++++.. ++....+.+ .+.+.+.|+|||+.+
T Consensus 73 ~v~~a~~aGAdgV~v~g~------~~~~~----~~~~i~~a~~-~G~~~~~g~--~s~~t~~e~-~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 73 EVEMAAKAGADIVCILGL------ADDST----IEDAVRAARK-YGVRLMADL--INVPDPVKR-AVELEELGVDYINVH 138 (430)
T ss_pred HHHHHHHcCCCEEEEecC------CChHH----HHHHHHHHHH-cCCEEEEEe--cCCCCHHHH-HHHHHhcCCCEEEEE
Confidence 889999999988665411 11111 2333333332 235777752 221122322 345667899999988
Q ss_pred CCC
Q psy965 210 GSI 212 (214)
Q Consensus 210 TGf 212 (214)
.||
T Consensus 139 pg~ 141 (430)
T PRK07028 139 VGI 141 (430)
T ss_pred ecc
Confidence 776
No 237
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=53.05 E-value=74 Score=28.81 Aligned_cols=75 Identities=27% Similarity=0.185 Sum_probs=44.3
Q ss_pred HHHHHHHHHCCCCEEEEec-Ch-hHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCE
Q psy965 128 LHEIELLAKQKVDEVDIVI-QR-SLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF 205 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vi-n~-~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDF 205 (214)
+.|+-++.+.|++..|+|. |- +. +-|+-.+..+++++..+..+. .++| |.-+|-+ |.++|..- ...|+|+
T Consensus 198 v~eal~~~~~~~~~~d~I~lDn~~~-~~G~~~~~~~~~~~~l~~~g~-~~~~-ieaSGgI-~~~~i~~~----a~~gvD~ 269 (302)
T cd01571 198 KEEALKAAKALGDKLDGVRLDTPSS-RRGVFRYLIREVRWALDIRGY-KHVK-IFVSGGL-DEEDIKEL----EDVGVDA 269 (302)
T ss_pred hHHHHHHHHHhCCCCcEEEECCCCC-CCCCHHHHHHHHHHHHHhCCC-CCeE-EEEeCCC-CHHHHHHH----HHcCCCE
Confidence 4567777777877778773 21 10 125555555555555554442 2355 5555668 87777544 3458999
Q ss_pred EEcCC
Q psy965 206 IKTSG 210 (214)
Q Consensus 206 IKTST 210 (214)
|-++|
T Consensus 270 isvGs 274 (302)
T cd01571 270 FGVGT 274 (302)
T ss_pred EECCc
Confidence 96554
No 238
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=52.83 E-value=1.5e+02 Score=26.24 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
..+.-..+++++.+.|.+-|++=+ | ++.+...+-+++++++.++ +++.+....--+.++-.+.++...+.|
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g----~~~~~d~~~v~~lr~~~g~---~~l~vD~n~~~~~~~A~~~~~~l~~~~ 204 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--G----GDLEDDIERIRAIREAAPD---ARLRVDANQGWTPEEAVELLRELAELG 204 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--C----CChhhHHHHHHHHHHhCCC---CeEEEeCCCCcCHHHHHHHHHHHHhcC
Confidence 456566789999999999998843 2 3455666778888887762 577787765436677777777778889
Q ss_pred CCEEEcC
Q psy965 203 SDFIKTS 209 (214)
Q Consensus 203 aDFIKTS 209 (214)
.+||.-.
T Consensus 205 l~~iEeP 211 (316)
T cd03319 205 VELIEQP 211 (316)
T ss_pred CCEEECC
Confidence 9999743
No 239
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.70 E-value=88 Score=28.59 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEec-cCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV-GELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt-~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
+.|+++|++.|||-| |.=|. . -+++++.++..++ ++++|. |=. |.+++..- ...|+|||
T Consensus 215 leea~eA~~aGaDiI-mLDnm------s----pe~l~~av~~~~~----~~~lEaSGGI-t~~ni~~y----A~tGVD~I 274 (294)
T PRK06978 215 LAQLETALAHGAQSV-LLDNF------T----LDMMREAVRVTAG----RAVLEVSGGV-NFDTVRAF----AETGVDRI 274 (294)
T ss_pred HHHHHHHHHcCCCEE-EECCC------C----HHHHHHHHHhhcC----CeEEEEECCC-CHHHHHHH----HhcCCCEE
Confidence 789999999999754 11122 1 2455555555543 345554 456 87887543 35799999
Q ss_pred EcCC
Q psy965 207 KTSG 210 (214)
Q Consensus 207 KTST 210 (214)
-||.
T Consensus 275 S~ga 278 (294)
T PRK06978 275 SIGA 278 (294)
T ss_pred EeCc
Confidence 8764
No 240
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=52.52 E-value=1.7e+02 Score=26.15 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=64.0
Q ss_pred CcccHHHHHHhhhcCCCC-CCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHH
Q psy965 90 FVSTVWHGSDNLKTKLVY-QPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKE 168 (214)
Q Consensus 90 ~P~~V~~a~~~L~~~gs~-v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~ 168 (214)
++.+.+.++...+ ..+ +||+ +-.=+|.. ...++.|++.|.+-| .++-+. -.+++..+..+++++
T Consensus 58 ~~~~~~~~~~~a~--~~~~vpv~---lhlDH~~~-----~e~i~~ai~~Gf~sV--mid~s~---l~~~eni~~t~~v~~ 122 (282)
T TIGR01859 58 YKMAVAMVKTLIE--RMSIVPVA---LHLDHGSS-----YESCIKAIKAGFSSV--MIDGSH---LPFEENLALTKKVVE 122 (282)
T ss_pred HHHHHHHHHHHHH--HCCCCeEE---EECCCCCC-----HHHHHHHHHcCCCEE--EECCCC---CCHHHHHHHHHHHHH
Confidence 3355666665555 345 6644 34456653 568899999998763 445433 267778888888888
Q ss_pred HhcCCceEEEEEeccCCC--------------CHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 169 KCGEKIHMKTILAVGELK--------------TSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 169 a~~~~~~lKvIlEt~~L~--------------t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
.|+. .-+.|=.|.|.++ +.|+ |.+...+.|+||+==|.|
T Consensus 123 ~a~~-~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~ee---a~~f~~~tgvD~Lavs~G 175 (282)
T TIGR01859 123 IAHA-KGVSVEAELGTLGGIEDGVDEKEAELADPDE---AEQFVKETGVDYLAAAIG 175 (282)
T ss_pred HHHH-cCCEEEEeeCCCcCccccccccccccCCHHH---HHHHHHHHCcCEEeeccC
Confidence 8875 3456666666642 3344 344444569999985544
No 241
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=52.36 E-value=78 Score=30.57 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=48.0
Q ss_pred HHHHHHHHHCC-CCEEEEecChhHhhcC----C--hhHHHHHHHHHHHHhcC----CceEEEEEeccCCCCHHHHHHHHH
Q psy965 128 LHEIELLAKQK-VDEVDIVIQRSLVLNN----Q--WPELFSEVKQMKEKCGE----KIHMKTILAVGELKTSENIYCASM 196 (214)
Q Consensus 128 ~~E~~~Ai~~G-AdEID~Vin~~~l~sg----~--~~~v~~Ei~~v~~a~~~----~~~lKvIlEt~~L~t~e~i~~A~~ 196 (214)
.+|++.|.+.| ||-| +| .. -+| + .-.+..+|.++++.+.. ..++-||.-=| +.|.+.+ .
T Consensus 171 ~eEA~~a~~~g~aD~I-vv-e~---EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGG-I~t~~~v----a 240 (444)
T TIGR02814 171 REEAELARRVPVADDI-CV-EA---DSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGG-IGTPEAA----A 240 (444)
T ss_pred HHHHHHHHhCCCCcEE-EE-ec---cCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCC-CCCHHHH----H
Confidence 35788888888 5776 43 32 221 1 22455566666666521 13567777777 5576655 3
Q ss_pred HHHHcCCCEEEcCCCCC
Q psy965 197 TAMFAGSDFIKTSGSIQ 213 (214)
Q Consensus 197 ia~~aGaDFIKTSTGf~ 213 (214)
.|...|||||-|.|-|.
T Consensus 241 AAlaLGAdgV~~GT~fl 257 (444)
T TIGR02814 241 AAFMLGADFIVTGSVNQ 257 (444)
T ss_pred HHHHcCCcEEEeccHHH
Confidence 56677999999999763
No 242
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=52.07 E-value=67 Score=27.48 Aligned_cols=66 Identities=17% Similarity=0.358 Sum_probs=42.1
Q ss_pred HHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
=..-++..++.|..-|++..|-. ++ .+=|+.+++..++ +++-.|-..|.|+. +.|+++||+||
T Consensus 22 a~~~~~al~~gGi~~iEiT~~t~-----~a---~~~I~~l~~~~p~-----~~vGAGTV~~~e~a----~~a~~aGA~Fi 84 (196)
T PF01081_consen 22 AVPIAEALIEGGIRAIEITLRTP-----NA---LEAIEALRKEFPD-----LLVGAGTVLTAEQA----EAAIAAGAQFI 84 (196)
T ss_dssp HHHHHHHHHHTT--EEEEETTST-----TH---HHHHHHHHHHHTT-----SEEEEES--SHHHH----HHHHHHT-SEE
T ss_pred HHHHHHHHHHCCCCEEEEecCCc-----cH---HHHHHHHHHHCCC-----CeeEEEeccCHHHH----HHHHHcCCCEE
Confidence 34556778889999999998753 33 3345556665543 56777877676654 56789999999
Q ss_pred EcC
Q psy965 207 KTS 209 (214)
Q Consensus 207 KTS 209 (214)
-|+
T Consensus 85 vSP 87 (196)
T PF01081_consen 85 VSP 87 (196)
T ss_dssp EES
T ss_pred ECC
Confidence 876
No 243
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=51.71 E-value=75 Score=30.28 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=48.9
Q ss_pred HHHHHHHHCCCCEEEEecChhHhh-----cCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCC
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGS 203 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~-----sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGa 203 (214)
.+++.+++.|||-|++-+-.|..- .|---.-..-+..+.+++.. ..+.||-+-|.- +..++.|| ..+||
T Consensus 277 ~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~-~~vpviadGGi~-~~~di~kA----la~GA 350 (450)
T TIGR01302 277 EQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQ-SGIPVIADGGIR-YSGDIVKA----LAAGA 350 (450)
T ss_pred HHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhh-cCCeEEEeCCCC-CHHHHHHH----HHcCC
Confidence 577889999999999876444221 11111122344555555543 346688888866 77888654 56799
Q ss_pred CEEEcCCCC
Q psy965 204 DFIKTSGSI 212 (214)
Q Consensus 204 DFIKTSTGf 212 (214)
|+|--+|-|
T Consensus 351 ~~V~~G~~~ 359 (450)
T TIGR01302 351 DAVMLGSLL 359 (450)
T ss_pred CEEEECchh
Confidence 998765544
No 244
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=51.71 E-value=80 Score=28.51 Aligned_cols=24 Identities=17% Similarity=-0.040 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEe
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIV 145 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~V 145 (214)
.+.+.-+++++++.+.|++|+-++
T Consensus 35 l~~eeI~~~a~~~~~~G~~ei~l~ 58 (322)
T TIGR03550 35 LSPEEVLEILRKGAAAGCTEALFT 58 (322)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEe
Confidence 467888889999999999997655
No 245
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=51.51 E-value=1.6e+02 Score=25.55 Aligned_cols=83 Identities=16% Similarity=0.042 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 199 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~ 199 (214)
+..+.+.-+.-++.+.+.|++.|=++=-.| ....+.+++=++.+++..+. +-|+.-.=+|...-..-+..|+
T Consensus 136 ~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~-----~~l~~H~Hn~~GlA~AN~laAi 207 (263)
T cd07943 136 HMASPEELAEQAKLMESYGADCVYVTDSAG---AMLPDDVRERVRALREALDP-----TPVGFHGHNNLGLAVANSLAAV 207 (263)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEcCCCC---CcCHHHHHHHHHHHHHhCCC-----ceEEEEecCCcchHHHHHHHHH
Confidence 345556666667888889999885443333 23456677777777765442 3456554545444445567788
Q ss_pred HcCCCEEEcCC
Q psy965 200 FAGSDFIKTSG 210 (214)
Q Consensus 200 ~aGaDFIKTST 210 (214)
++|+++|-||-
T Consensus 208 ~aGa~~vd~s~ 218 (263)
T cd07943 208 EAGATRIDGSL 218 (263)
T ss_pred HhCCCEEEeec
Confidence 99999999875
No 246
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=51.46 E-value=1.8e+02 Score=25.99 Aligned_cols=94 Identities=11% Similarity=0.016 Sum_probs=60.2
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEecc-
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVG- 183 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~- 183 (214)
+..++|.+- + |. .+..-+..++.|.+.|||-+ ++++..+.+ ..-+.+++-.+++.++++- ++=+-=-++
T Consensus 74 ~~~~pvi~g-v----~~-~t~~~i~~~~~a~~~Gadav-~~~pP~y~~-~~~~~i~~~f~~va~~~~l--pi~lYn~~g~ 143 (303)
T PRK03620 74 AGRVPVIAG-A----GG-GTAQAIEYAQAAERAGADGI-LLLPPYLTE-APQEGLAAHVEAVCKSTDL--GVIVYNRDNA 143 (303)
T ss_pred CCCCcEEEe-c----CC-CHHHHHHHHHHHHHhCCCEE-EECCCCCCC-CCHHHHHHHHHHHHHhCCC--CEEEEcCCCC
Confidence 345666554 3 33 67778889999999999999 555554444 3568888888889887642 222111233
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 184 ELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 184 ~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
.| +.+.+.+.++ ..-..-.||=|+|
T Consensus 144 ~l-~~~~l~~L~~--~~pni~giK~s~~ 168 (303)
T PRK03620 144 VL-TADTLARLAE--RCPNLVGFKDGVG 168 (303)
T ss_pred CC-CHHHHHHHHh--hCCCEEEEEeCCC
Confidence 34 6666654431 2357888887776
No 247
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=51.44 E-value=84 Score=26.55 Aligned_cols=74 Identities=20% Similarity=0.161 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC---CCHHHHHHHHHHHH
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL---KTSENIYCASMTAM 199 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L---~t~e~i~~A~~ia~ 199 (214)
+-+.++.=.+.+++.|++-||+=++. ++.. +.....+.. ...|+|+---.+ .+.+++....+-+.
T Consensus 73 ~~~~~~~ll~~~~~~~~d~iDiE~~~-------~~~~---~~~~~~~~~--~~~~iI~S~H~f~~tp~~~~l~~~~~~~~ 140 (224)
T PF01487_consen 73 SEEEYLELLERAIRLGPDYIDIELDL-------FPDD---LKSRLAARK--GGTKIILSYHDFEKTPSWEELIELLEEMQ 140 (224)
T ss_dssp -HHHHHHHHHHHHHHTSSEEEEEGGC-------CHHH---HHHHHHHHH--TTSEEEEEEEESS---THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEccc-------chhH---HHHHHHHhh--CCCeEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 45888889999999999999985551 1111 111222222 247888876622 24566777778888
Q ss_pred HcCCCEEEc
Q psy965 200 FAGSDFIKT 208 (214)
Q Consensus 200 ~aGaDFIKT 208 (214)
+.|+|.+|=
T Consensus 141 ~~gadivKi 149 (224)
T PF01487_consen 141 ELGADIVKI 149 (224)
T ss_dssp HTT-SEEEE
T ss_pred hcCCCeEEE
Confidence 899999983
No 248
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=51.20 E-value=75 Score=26.68 Aligned_cols=71 Identities=7% Similarity=0.011 Sum_probs=41.0
Q ss_pred HHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
-++...+.|++++.++ ++.....|.- .-.+=++++++.+ .+.+++--| +.+.+.+.++. ++|+|+|=-+
T Consensus 34 ~a~~~~~~g~d~l~v~-dl~~~~~~~~-~~~~~i~~i~~~~----~~pv~~~Gg-I~~~e~~~~~~----~~Gad~vvig 102 (234)
T cd04732 34 VAKKWEEAGAKWLHVV-DLDGAKGGEP-VNLELIEEIVKAV----GIPVQVGGG-IRSLEDIERLL----DLGVSRVIIG 102 (234)
T ss_pred HHHHHHHcCCCEEEEE-CCCccccCCC-CCHHHHHHHHHhc----CCCEEEeCC-cCCHHHHHHHH----HcCCCEEEEC
Confidence 4455567899999988 6655433211 1122334444443 245677666 55766654433 4789988655
Q ss_pred CC
Q psy965 210 GS 211 (214)
Q Consensus 210 TG 211 (214)
|.
T Consensus 103 s~ 104 (234)
T cd04732 103 TA 104 (234)
T ss_pred ch
Confidence 53
No 249
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=51.13 E-value=1.1e+02 Score=27.18 Aligned_cols=66 Identities=26% Similarity=0.193 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
..|+.+|++.|||-|=+ =|.+. ++++++++..+....+ .|.-.|=. |.+++... ..+|+|+|-
T Consensus 191 ~eea~~A~~~gaD~I~l-d~~~~----------e~l~~~v~~i~~~~~i-~i~asGGI-t~~ni~~~----a~~Gad~Is 253 (269)
T cd01568 191 LEEAEEALEAGADIIML-DNMSP----------EELKEAVKLLKGLPRV-LLEASGGI-TLENIRAY----AETGVDVIS 253 (269)
T ss_pred HHHHHHHHHcCCCEEEE-CCCCH----------HHHHHHHHHhccCCCe-EEEEECCC-CHHHHHHH----HHcCCCEEE
Confidence 57999999999876533 12211 5555555544321022 35566667 77887533 578999997
Q ss_pred cCC
Q psy965 208 TSG 210 (214)
Q Consensus 208 TST 210 (214)
+|.
T Consensus 254 vga 256 (269)
T cd01568 254 TGA 256 (269)
T ss_pred EcH
Confidence 653
No 250
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=50.69 E-value=75 Score=28.16 Aligned_cols=75 Identities=9% Similarity=0.019 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHc--C
Q psy965 125 ETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA--G 202 (214)
Q Consensus 125 ~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~a--G 202 (214)
+.=+..+++-++.||+-||+=.-.. ..-.++.+..=|+.+.+.+ .+-+.|.|..- +- .+.|.++ |
T Consensus 25 ~~i~~~A~~~~~~GAdiIDVg~~~~--~~eE~~r~~~~v~~l~~~~----~~plsIDT~~~---~v----~eaaL~~~~G 91 (261)
T PRK07535 25 AFIQKLALKQAEAGADYLDVNAGTA--VEEEPETMEWLVETVQEVV----DVPLCIDSPNP---AA----IEAGLKVAKG 91 (261)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC--chhHHHHHHHHHHHHHHhC----CCCEEEeCCCH---HH----HHHHHHhCCC
Confidence 4446678888999999999865432 1112333444444444322 23467777643 22 3334444 9
Q ss_pred CCEEEcCCCC
Q psy965 203 SDFIKTSGSI 212 (214)
Q Consensus 203 aDFIKTSTGf 212 (214)
++.|..-||.
T Consensus 92 ~~iINsIs~~ 101 (261)
T PRK07535 92 PPLINSVSAE 101 (261)
T ss_pred CCEEEeCCCC
Confidence 9999988874
No 251
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=50.67 E-value=2.2e+02 Score=26.75 Aligned_cols=99 Identities=13% Similarity=-0.027 Sum_probs=67.5
Q ss_pred CCCCCeEEEecCCCCCCCC---------HHHHHHHHHHHHHCCCCEEEEecCh--hHhhc-------------CChhHHH
Q psy965 105 LVYQPCLSQPAGFPSGQYL---------LETRLHEIELLAKQKVDEVDIVIQR--SLVLN-------------NQWPELF 160 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~---------~~~K~~E~~~Ai~~GAdEID~Vin~--~~l~s-------------g~~~~v~ 160 (214)
.-++++... -||-|... .+.-..-++.|.+.|||=|=.-..- ..+.. -+++...
T Consensus 190 ~~GlPlv~~--~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~ 267 (348)
T PRK09250 190 ELGLATVLW--SYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPI 267 (348)
T ss_pred HhCCCEEEE--ecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchH
Confidence 356776655 69999742 4566778999999999987665431 11111 1223344
Q ss_pred HHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHH---HHcCCCEE
Q psy965 161 SEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTA---MFAGSDFI 206 (214)
Q Consensus 161 ~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia---~~aGaDFI 206 (214)
+.++.++++|-. -++.|++.-|.=.++++..+..+-+ +++|+.-+
T Consensus 268 ~~~~~~V~ac~a-g~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv 315 (348)
T PRK09250 268 DLVRYQVANCYM-GRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGL 315 (348)
T ss_pred HHHHHHHHhhcc-CCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcch
Confidence 566777777732 1478899888776778898999999 99998654
No 252
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=50.62 E-value=75 Score=29.25 Aligned_cols=73 Identities=16% Similarity=0.111 Sum_probs=40.7
Q ss_pred HHHHHHHHH------CCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHc
Q psy965 128 LHEIELLAK------QKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 201 (214)
Q Consensus 128 ~~E~~~Ai~------~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~a 201 (214)
+.|+++|++ .|||-|= .=|. .+.-.+.+.--+++++.++..++ .. .|--+|=. |.+++..- ...
T Consensus 213 leea~ea~~~~~~~~agaDiIm-LDnm-~~~~~~~~~~~e~l~~av~~~~~-~~--~lEaSGGI-t~~ni~~y----A~t 282 (308)
T PLN02716 213 LEEVKEVLEYLSDTKTSLTRVM-LDNM-VVPLENGDVDVSMLKEAVELING-RF--ETEASGNV-TLDTVHKI----GQT 282 (308)
T ss_pred HHHHHHHHHhcccccCCCCEEE-eCCC-cccccccCCCHHHHHHHHHhhCC-Cc--eEEEECCC-CHHHHHHH----HHc
Confidence 689999999 9986531 1111 00001111233555555555544 21 14445567 87888543 367
Q ss_pred CCCEEEcCC
Q psy965 202 GSDFIKTSG 210 (214)
Q Consensus 202 GaDFIKTST 210 (214)
|+|||-||.
T Consensus 283 GVD~Is~Ga 291 (308)
T PLN02716 283 GVTYISSGA 291 (308)
T ss_pred CCCEEEeCc
Confidence 999998763
No 253
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=50.58 E-value=1.8e+02 Score=25.73 Aligned_cols=92 Identities=9% Similarity=0.004 Sum_probs=61.4
Q ss_pred CCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEe----
Q psy965 106 VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILA---- 181 (214)
Q Consensus 106 s~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlE---- 181 (214)
..++|.+- + |...++.-+..++.|.+.|||-+=++.++ +++ ..-+.+++-.++|.++++ +-+|+=
T Consensus 72 ~~~~viag-v----g~~~t~~ai~~a~~a~~~Gad~v~v~~P~-y~~-~~~~~l~~~f~~va~a~~----lPv~iYn~P~ 140 (293)
T PRK04147 72 GKVKLIAQ-V----GSVNTAEAQELAKYATELGYDAISAVTPF-YYP-FSFEEICDYYREIIDSAD----NPMIVYNIPA 140 (293)
T ss_pred CCCCEEec-C----CCCCHHHHHHHHHHHHHcCCCEEEEeCCc-CCC-CCHHHHHHHHHHHHHhCC----CCEEEEeCch
Confidence 34555554 2 55678888889999999999998666544 333 345788888888887764 233332
Q ss_pred -ccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 182 -VGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 182 -t~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
||.--+.+.+.+.++ .-..-.||-|+|
T Consensus 141 ~tg~~l~~~~l~~L~~---~pnvvgiK~s~~ 168 (293)
T PRK04147 141 LTGVNLSLDQFNELFT---LPKVIGVKQTAG 168 (293)
T ss_pred hhccCCCHHHHHHHhc---CCCEEEEEeCCC
Confidence 444336676765543 457888888876
No 254
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=50.45 E-value=1.6e+02 Score=29.31 Aligned_cols=81 Identities=26% Similarity=0.166 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHc
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 201 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~a 201 (214)
++.+-=+.-++++.+.||+.|=+.=-.|. .....+++-++++++..+ +-|+.-.=+|...-...+..|+++
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~---~~P~~v~~lv~~lk~~~~------~pi~~H~Hnt~Gla~An~laAvea 216 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSICIKDMAGI---LTPKAAYELVSALKKRFG------LPVHLHSHATTGMAEMALLKAIEA 216 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCC---cCHHHHHHHHHHHHHhCC------CceEEEecCCCCcHHHHHHHHHHh
Confidence 56677677788899999998733322232 246778888888887653 123433333433344456778999
Q ss_pred CCCEEEcCCC
Q psy965 202 GSDFIKTSGS 211 (214)
Q Consensus 202 GaDFIKTSTG 211 (214)
|+|.|-||-+
T Consensus 217 Ga~~vd~ai~ 226 (582)
T TIGR01108 217 GADGIDTAIS 226 (582)
T ss_pred CCCEEEeccc
Confidence 9999998753
No 255
>PLN02623 pyruvate kinase
Probab=50.43 E-value=2.2e+02 Score=28.51 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=71.9
Q ss_pred CCCCHHHHHHHHHHhhc-cCchhhhcccccc-CcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHC
Q psy965 60 GDDTEAVVETLTLKAIQ-PLSEELKEKVLRG-FVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQ 137 (214)
Q Consensus 60 ~~~T~~~I~~lc~eA~~-~f~~~~~~~~~cv-~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~ 137 (214)
|..|+.|.+.+ +-+.. .+. +. .+-+| .+..|..+++.++..+..+.+.+- |==|.|-. .+++-++
T Consensus 274 p~lTekD~~di-~f~~~~~vD--~i-alSFVr~a~DV~~~r~~l~~~~~~~~iiak-IEt~eaVe-------NldeIl~- 340 (581)
T PLN02623 274 PSITEKDWEDI-KFGVENKVD--FY-AVSFVKDAQVVHELKDYLKSCNADIHVIVK-IESADSIP-------NLHSIIT- 340 (581)
T ss_pred CCCCHHHHHHH-HHHHHcCCC--EE-EECCCCCHHHHHHHHHHHHHcCCcceEEEE-ECCHHHHH-------hHHHHHH-
Confidence 56788888875 34443 222 00 01123 466777788888765667777777 33333332 3333333
Q ss_pred CCCEEEEecChhHhhcC-ChhHHHHHHHHHHHHhcCCceEEEEEec---------cCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 138 KVDEVDIVIQRSLVLNN-QWPELFSEVKQMKEKCGEKIHMKTILAV---------GELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 138 GAdEID~Vin~~~l~sg-~~~~v~~Ei~~v~~a~~~~~~lKvIlEt---------~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
|+|.| .|-+|-|--- -.+.+..-++.+.+.|.. ...-||+-| +.- |..|+..+. -++.-|+|||=
T Consensus 341 g~DgI--mIgrgDLgvelg~~~v~~~qk~Ii~~~~~-~gKpvivaTQMLESMi~~~~P-TRAEv~Dva-~av~dG~d~vm 415 (581)
T PLN02623 341 ASDGA--MVARGDLGAELPIEEVPLLQEEIIRRCRS-MGKPVIVATNMLESMIVHPTP-TRAEVSDIA-IAVREGADAVM 415 (581)
T ss_pred hCCEE--EECcchhhhhcCcHHHHHHHHHHHHHHHH-hCCCEEEECchhhhcccCCCC-CchhHHHHH-HHHHcCCCEEE
Confidence 77764 2233322111 125666666777777754 223445444 433 556665555 45677999997
Q ss_pred cC
Q psy965 208 TS 209 (214)
Q Consensus 208 TS 209 (214)
-|
T Consensus 416 Ls 417 (581)
T PLN02623 416 LS 417 (581)
T ss_pred ec
Confidence 55
No 256
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.43 E-value=1e+02 Score=28.06 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEec-cCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV-GELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt-~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
+.|+++|++.|||-| |.=|.+ -+|+++.++..++ ++++|. |=. |.+++..- ...|+|||
T Consensus 207 leea~~a~~agaDiI-mLDnms----------pe~l~~av~~~~~----~~~leaSGGI-~~~ni~~y----A~tGVD~I 266 (290)
T PRK06559 207 LAAAEEAAAAGADII-MLDNMS----------LEQIEQAITLIAG----RSRIECSGNI-DMTTISRF----RGLAIDYV 266 (290)
T ss_pred HHHHHHHHHcCCCEE-EECCCC----------HHHHHHHHHHhcC----ceEEEEECCC-CHHHHHHH----HhcCCCEE
Confidence 479999999999754 111221 3556666665554 345554 466 87887543 46799999
Q ss_pred EcCC
Q psy965 207 KTSG 210 (214)
Q Consensus 207 KTST 210 (214)
-||.
T Consensus 267 s~ga 270 (290)
T PRK06559 267 SSGS 270 (290)
T ss_pred EeCc
Confidence 8764
No 257
>PLN02428 lipoic acid synthase
Probab=50.41 E-value=1.6e+02 Score=27.57 Aligned_cols=75 Identities=19% Similarity=0.145 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHCCCCEEEEe-cChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCC
Q psy965 126 TRLHEIELLAKQKVDEVDIV-IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSD 204 (214)
Q Consensus 126 ~K~~E~~~Ai~~GAdEID~V-in~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaD 204 (214)
.-...++.+.+.|++++=++ .++..+..+..+.+.+=+++|++..+. ..+.+..- +.+.+.+ +.....++|.|
T Consensus 134 Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~-i~Ie~L~p-df~~d~e----lL~~L~eAG~d 207 (349)
T PLN02428 134 EPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPE-ILVEALVP-DFRGDLG----AVETVATSGLD 207 (349)
T ss_pred hHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCC-cEEEEeCc-cccCCHH----HHHHHHHcCCC
Confidence 33456667777899987333 233445677788888888888876554 44555333 2222422 34455678877
Q ss_pred EE
Q psy965 205 FI 206 (214)
Q Consensus 205 FI 206 (214)
-+
T Consensus 208 ~i 209 (349)
T PLN02428 208 VF 209 (349)
T ss_pred EE
Confidence 54
No 258
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=50.12 E-value=1.8e+02 Score=25.70 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=58.1
Q ss_pred CCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC
Q psy965 106 VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 185 (214)
Q Consensus 106 s~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L 185 (214)
..++|.+- +| . .+..=+..++.|.+.|||-+ ++++..+.+ .+.+.+++-.+++.++++ .++=+-=-++.-
T Consensus 68 ~~~pvi~g-v~----~-~t~~~i~~a~~a~~~Gad~v-~~~pP~y~~-~~~~~i~~~f~~v~~~~~--~pi~lYn~~g~~ 137 (289)
T cd00951 68 GRVPVLAG-AG----Y-GTATAIAYAQAAEKAGADGI-LLLPPYLTE-APQEGLYAHVEAVCKSTD--LGVIVYNRANAV 137 (289)
T ss_pred CCCCEEEe-cC----C-CHHHHHHHHHHHHHhCCCEE-EECCCCCCC-CCHHHHHHHHHHHHhcCC--CCEEEEeCCCCC
Confidence 45665554 34 2 45555778999999999999 555554544 356888888888888764 222222124432
Q ss_pred CCHHHHHHHHHHHH-HcCCCEEEcCCC
Q psy965 186 KTSENIYCASMTAM-FAGSDFIKTSGS 211 (214)
Q Consensus 186 ~t~e~i~~A~~ia~-~aGaDFIKTSTG 211 (214)
-+.+.+.+. +- .-..-.||=|+|
T Consensus 138 l~~~~l~~L---~~~~pnivgiKds~~ 161 (289)
T cd00951 138 LTADSLARL---AERCPNLVGFKDGVG 161 (289)
T ss_pred CCHHHHHHH---HhcCCCEEEEEeCCC
Confidence 266666544 43 246778887766
No 259
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=50.02 E-value=1.7e+02 Score=25.30 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=52.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEecChh---------H---hhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC
Q psy965 118 PSGQYLLETRLHEIELLAKQKVDEVDIVIQRS---------L---VLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 185 (214)
Q Consensus 118 P~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~---------~---l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L 185 (214)
|.|..+++.- ++.|++.|-++|=+.=-.. . ....++....+|+.++++.-+++..+++=+|.+++
T Consensus 11 ~d~~~~~ee~---v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~~GiE~~~~ 87 (253)
T TIGR01856 11 AHGTDTLEEV---VQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKLKILIGLEVDYI 87 (253)
T ss_pred CCCCCCHHHH---HHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCCeEEEEEEeccc
Confidence 4666666643 4567888888876651110 0 11235666778888888765544778888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCEEE
Q psy965 186 KTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aGaDFIK 207 (214)
...++ ..-.+....+.|||=
T Consensus 88 ~~~~~--~~~~~l~~~~~D~vi 107 (253)
T TIGR01856 88 PGFED--FTKDFLDEYGLDFVI 107 (253)
T ss_pred cchHH--HHHHHHHHCCCCeEE
Confidence 44333 333455566788873
No 260
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=49.99 E-value=1.5e+02 Score=27.74 Aligned_cols=109 Identities=14% Similarity=-0.055 Sum_probs=67.4
Q ss_pred CcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHH
Q psy965 90 FVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEK 169 (214)
Q Consensus 90 ~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a 169 (214)
+++=+.-.++.|... ...-+++++ -|.|-++-+... -+++.+..|+| ++-|-+.+-+..|-...+=++.+.++
T Consensus 110 P~~Gi~g~R~~lgv~-~rPl~~tii--KP~GL~~~~~a~-~~~~~~~gGvD---~IKdDe~l~~~~~~p~~eRv~~v~~a 182 (364)
T cd08210 110 PRFGIAGLRALLGIP-ERPLLCSAL--KPQGLSAAELAE-LAYAFALGGID---IIKDDHGLADQPFAPFEERVKACQEA 182 (364)
T ss_pred CCCChHHHHHHhCCC-CCceEEEEe--ccccCCHHHHHH-HHHHHHhcCCC---eeecCccccCccCCCHHHHHHHHHHH
Confidence 445566777777642 344567773 899888766655 47777777754 55566656666666666555555544
Q ss_pred h---cC--CceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 170 C---GE--KIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 170 ~---~~--~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
. .+ +...-++.-.... .+++.+=++.|.++|++.+-
T Consensus 183 v~~a~~eTG~~~~y~~Nita~--~~em~~ra~~a~~~Ga~~vM 223 (364)
T cd08210 183 VAEANAETGGRTLYAPNVTGP--PTQLLERARFAKEAGAGGVL 223 (364)
T ss_pred HHHHHhhcCCcceEEEecCCC--HHHHHHHHHHHHHcCCCEEE
Confidence 3 21 1233444444433 35777778888999998764
No 261
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=49.86 E-value=1.7e+02 Score=25.30 Aligned_cols=162 Identities=15% Similarity=0.069 Sum_probs=87.8
Q ss_pred CchhhhhcccCHHHHHHHHHHhhhhhhhhhHhHHHHHHHhhhhhcccCCCCCCCHHHHHHHHHHhhccCchhhhcccccc
Q psy965 10 DFKWVHDIQINTKYLEDLTRQFEAVDLSRIKNKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLRG 89 (214)
Q Consensus 10 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ID~TlL~~~~T~~~I~~lc~eA~~~f~~~~~~~~~cv 89 (214)
+.+++.+|.=|.+-+.+. . + +. .+.++++..+++- -+.-.....+.+.++++|++... .. .-.++
T Consensus 18 ~~~~i~GvTTNPsll~k~-----g---~--~~-~~~~~~i~~~~~g-~vs~qv~~~~~~~mi~~a~~l~~-~~--~~i~i 82 (213)
T TIGR00875 18 ELGILAGVTTNPSLIAKE-----G---R--SF-WEVLKEIQEAVEG-PVSAETISLDAEGMVEEAKELAK-LA--PNIVV 82 (213)
T ss_pred hcCCcceEeCCHHHHHhc-----C---C--CH-HHHHHHHHHhcCC-cEEEEEeeCCHHHHHHHHHHHHH-hC--CCeEE
Confidence 345677788887766641 1 1 11 2344555555542 22222233445666666664211 00 11233
Q ss_pred --C--cccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHH
Q psy965 90 --F--VSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQ 165 (214)
Q Consensus 90 --~--P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~ 165 (214)
| +.-++. .+.|+. .++++... .=| -+.++..|.+.||+-|=.-+||-.-..++--.+.+++..
T Consensus 83 KIP~T~~Gl~A-~~~L~~--~Gi~v~~T-~vf---------s~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~ 149 (213)
T TIGR00875 83 KIPMTSEGLKA-VKILKK--EGIKTNVT-LVF---------SAAQALLAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKT 149 (213)
T ss_pred EeCCCHHHHHH-HHHHHH--CCCceeEE-Eec---------CHHHHHHHHHcCCCEEEeecchHHHcCCCHHHHHHHHHH
Confidence 2 122444 445663 45665544 223 245788888999998776677754444565566666666
Q ss_pred HHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 166 MKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 166 v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+.+.-+ ...| ||-.+.- +.+++.. +..+|+|.+-
T Consensus 150 ~~~~~~--~~tk-IlaAS~r-~~~~v~~----~~~~G~d~vT 183 (213)
T TIGR00875 150 IFENHA--PDTE-VIAASVR-HPRHVLE----AALIGADIAT 183 (213)
T ss_pred HHHHcC--CCCE-EEEeccC-CHHHHHH----HHHcCCCEEE
Confidence 664333 3567 5566644 6677654 3467999874
No 262
>PRK07360 FO synthase subunit 2; Reviewed
Probab=49.84 E-value=71 Score=29.54 Aligned_cols=79 Identities=19% Similarity=0.153 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcC-ChhHHHHHHHHHHHHhcCCceEEEE--Ee-------ccCCCCHHH
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNN-QWPELFSEVKQMKEKCGEKIHMKTI--LA-------VGELKTSEN 190 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg-~~~~v~~Ei~~v~~a~~~~~~lKvI--lE-------t~~L~t~e~ 190 (214)
..+.+.-+..++++.+.|+.++-+| -|.-.+. .++++.+=++.+++..++ .+++.. .| .|.+ +.+.
T Consensus 90 ~ls~eeI~~~a~~a~~~G~~~i~l~--~G~~p~~~~~e~~~~~i~~ik~~~~~-i~i~a~s~~ei~~~~~~~G~~-~~e~ 165 (371)
T PRK07360 90 WLTIAEILEKAAEAVKRGATEVCIQ--GGLHPAADSLEFYLEILEAIKEEFPD-IHLHAFSPMEVYFAAREDGLS-YEEV 165 (371)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEc--cCCCCCCCcHHHHHHHHHHHHHhCCC-cceeeCCHHHHHHHHhhcCCC-HHHH
Confidence 3577888889999999999999998 3422233 366777777777764443 444442 12 1433 4333
Q ss_pred HHHHHHHHHHcCCCEEE
Q psy965 191 IYCASMTAMFAGSDFIK 207 (214)
Q Consensus 191 i~~A~~ia~~aGaDFIK 207 (214)
+ +...+||+|.+-
T Consensus 166 l----~~LkeAGld~~~ 178 (371)
T PRK07360 166 L----KALKDAGLDSMP 178 (371)
T ss_pred H----HHHHHcCCCcCC
Confidence 3 455669999883
No 263
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=49.72 E-value=1e+02 Score=28.44 Aligned_cols=133 Identities=17% Similarity=0.064 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHhh-ccCchhhhcccccc-CcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHC
Q psy965 60 GDDTEAVVETLTLKAI-QPLSEELKEKVLRG-FVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQ 137 (214)
Q Consensus 60 ~~~T~~~I~~lc~eA~-~~f~~~~~~~~~cv-~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~ 137 (214)
|..|+.|.+.+ +-|. +.+. +. ..-+| .|..|..+++.|...|.+++|.+= |--|.|-..++.=+.+
T Consensus 172 p~LtekD~~di-~fa~~~~vD--~I-alSFVrsa~dV~~lr~~l~~~~~~~~iiaK-IE~~~~v~nl~eI~~~------- 239 (348)
T PF00224_consen 172 PALTEKDKEDI-KFAVENGVD--FI-ALSFVRSAEDVKELRKILGEKGKDIKIIAK-IETKEAVENLDEILEA------- 239 (348)
T ss_dssp -SS-HHHHHHH-HHHHHTT-S--EE-EETTE-SHHHHHHHHHHHTCTTTTSEEEEE-E-SHHHHHTHHHHHHH-------
T ss_pred ccCCHHHHHHH-HHHHHcCCC--EE-EecCCCchHHHHHHHHHhhhcCcccceeec-cccHHHHhhHHHHhhh-------
Confidence 67788888887 3444 3322 00 01133 688999999999876778888888 5666666655544433
Q ss_pred CCCEEEEecChhHhhc-CChhHHHHHHHHHHHHhcCCceEEEEEeccCCC--------CHHHHHHHHHHHHHcCCCEEEc
Q psy965 138 KVDEVDIVIQRSLVLN-NQWPELFSEVKQMKEKCGEKIHMKTILAVGELK--------TSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 138 GAdEID~Vin~~~l~s-g~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~--------t~e~i~~A~~ia~~aGaDFIKT 208 (214)
+|. ++|.||.|-- =.++.+..-=+.+...|.. ..--||+.|..|. |..|+...+....+ |+|-|==
T Consensus 240 -sDg--imiaRGDLg~e~~~e~v~~~Qk~ii~~~~~-~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~d-g~d~vmL 314 (348)
T PF00224_consen 240 -SDG--IMIARGDLGVEIPFEKVPIIQKRIIKKCNA-AGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLD-GADAVML 314 (348)
T ss_dssp -SSE--EEEEHHHHHHHSTGGGHHHHHHHHHHHHHH-HT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHH-T-SEEEE
T ss_pred -cCe--EEEecCCcceeeeHHHHHHHHHHHHHHHHH-hCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHc-CCCEEEe
Confidence 444 5678876532 2344555444455555543 3347888888764 45556555544444 9998865
Q ss_pred C
Q psy965 209 S 209 (214)
Q Consensus 209 S 209 (214)
|
T Consensus 315 s 315 (348)
T PF00224_consen 315 S 315 (348)
T ss_dssp S
T ss_pred c
Confidence 4
No 264
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=49.65 E-value=1.7e+02 Score=26.57 Aligned_cols=81 Identities=11% Similarity=0.061 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
..+.-+.+++..++.|.+-+=+-+.. .+.+.-.+-++++++++|+ -+++++....--+.++-.+.++...+.|
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~-----~~~~~d~~~v~air~~~g~--~~~l~vDaN~~~~~~~A~~~~~~l~~~~ 213 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGY-----PTADEDLAVVRSIRQAVGD--GVGLMVDYNQSLTVPEAIERGQALDQEG 213 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCC-----CChHhHHHHHHHHHHhhCC--CCEEEEeCCCCcCHHHHHHHHHHHHcCC
Confidence 35556788888888887654442211 1334445668888888875 4678888877447777777777777889
Q ss_pred CCEEEcCC
Q psy965 203 SDFIKTSG 210 (214)
Q Consensus 203 aDFIKTST 210 (214)
.+||--+.
T Consensus 214 i~~iEeP~ 221 (355)
T cd03321 214 LTWIEEPT 221 (355)
T ss_pred CCEEECCC
Confidence 99987543
No 265
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=49.63 E-value=82 Score=26.38 Aligned_cols=66 Identities=9% Similarity=0.147 Sum_probs=37.9
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
..-++.+.+.||+-|=+| +......|.. +.++.+++.+. +.|++-. ...+.++ .+.+.++|+|+|-
T Consensus 34 ~~~A~~~~~~GA~~l~v~-~~~~~~~g~~----~~~~~i~~~v~----iPi~~~~-~i~~~~~----v~~~~~~Gad~v~ 99 (217)
T cd00331 34 VEIAKAYEKAGAAAISVL-TEPKYFQGSL----EDLRAVREAVS----LPVLRKD-FIIDPYQ----IYEARAAGADAVL 99 (217)
T ss_pred HHHHHHHHHcCCCEEEEE-eCccccCCCH----HHHHHHHHhcC----CCEEECC-eecCHHH----HHHHHHcCCCEEE
Confidence 344667777899988444 4444444555 46677776553 2223322 2324333 4577788888884
No 266
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=49.38 E-value=1.7e+02 Score=25.05 Aligned_cols=108 Identities=9% Similarity=0.015 Sum_probs=56.4
Q ss_pred cHHHHHHhhhcCCCCCCeEEEecC----CCCCCCCHHHH-------HHHHHHHHHCCCCEEEEecChhHhhc----CChh
Q psy965 93 TVWHGSDNLKTKLVYQPCLSQPAG----FPSGQYLLETR-------LHEIELLAKQKVDEVDIVIQRSLVLN----NQWP 157 (214)
Q Consensus 93 ~V~~a~~~L~~~gs~v~vatV~ig----FP~G~~~~~~K-------~~E~~~Ai~~GAdEID~Vin~~~l~s----g~~~ 157 (214)
.....++.++ ..++.+.++..+ ||.+....+.+ ..-++.|...|++-|=+ ........ ..|+
T Consensus 53 ~~~~l~~~l~--~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~-~~~~~~~~~~~~~~~~ 129 (284)
T PRK13210 53 ERLSLVKAIY--ETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQL-AGYDVYYEEKSEETRQ 129 (284)
T ss_pred HHHHHHHHHH--HcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEE-CCcccccccccHHHHH
Confidence 3555666777 467777766322 56665444332 22345566789988632 11110111 1344
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEecc---CCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 158 ELFSEVKQMKEKCGEKIHMKTILAVG---ELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 158 ~v~~Ei~~v~~a~~~~~~lKvIlEt~---~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
.+.+.+..+.+.+.+ .-+++-+|+- .+.+.++ +..+.-..+.+.++
T Consensus 130 ~~~~~l~~l~~~a~~-~gv~l~lE~~~~~~~~~~~~---~~~l~~~v~~~~~~ 178 (284)
T PRK13210 130 RFIEGLAWAVEQAAA-AQVMLAVEIMDTPFMNSISK---WKKWDKEIDSPWLT 178 (284)
T ss_pred HHHHHHHHHHHHHHH-hCCEEEEEecCccccCCHHH---HHHHHHHcCCCcee
Confidence 555566666666654 4588899984 3434333 33444444544443
No 267
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=49.38 E-value=1.6e+02 Score=24.85 Aligned_cols=93 Identities=8% Similarity=-0.005 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHhhccCchhhhcccc-ccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy965 62 DTEAVVETLTLKAIQPLSEELKEKVL-RGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVD 140 (214)
Q Consensus 62 ~T~~~I~~lc~eA~~~f~~~~~~~~~-cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAd 140 (214)
.+.+++++.++.|.+. +.+ +. +-||.-+...++..+ ..++++ +++|=| |..+.+.-+..++++++.||+
T Consensus 140 ~~~~~i~~~~~~a~~~-GaD----~Ik~~~~~~~~~~~~i~~--~~~~pv--v~~GG~-~~~~~~~~l~~~~~~~~~Ga~ 209 (235)
T cd00958 140 KDPDLIAYAARIGAEL-GAD----IVKTKYTGDAESFKEVVE--GCPVPV--VIAGGP-KKDSEEEFLKMVYDAMEAGAA 209 (235)
T ss_pred cCHHHHHHHHHHHHHH-CCC----EEEecCCCCHHHHHHHHh--cCCCCE--EEeCCC-CCCCHHHHHHHHHHHHHcCCc
Confidence 3567888877777641 111 21 224444445444443 456775 335644 234566667889999999999
Q ss_pred EEEEecChhHhhcCChhHHHHHHHHH
Q psy965 141 EVDIVIQRSLVLNNQWPELFSEVKQM 166 (214)
Q Consensus 141 EID~Vin~~~l~sg~~~~v~~Ei~~v 166 (214)
-+-+.=|+ +.+.|.....++++++
T Consensus 210 gv~vg~~i--~~~~dp~~~~~~~~~~ 233 (235)
T cd00958 210 GVAVGRNI--FQRPDPVAMLRAISAV 233 (235)
T ss_pred EEEechhh--hcCCCHHHHHHHHHHH
Confidence 87555444 5777766666666554
No 268
>PRK08445 hypothetical protein; Provisional
Probab=49.36 E-value=75 Score=29.28 Aligned_cols=76 Identities=14% Similarity=0.080 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEE--------EEeccCCCCHHHHHHH
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKT--------ILAVGELKTSENIYCA 194 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKv--------IlEt~~L~t~e~i~~A 194 (214)
+.+.-...++++.+.|++|| |+.=|.--.-+.+++.+.++.|++..++ ..++. +...+.++..|++
T Consensus 74 ~~eeI~~~~~~a~~~g~~~i--~~~gg~~~~~~~e~~~~l~~~Ik~~~p~-i~~~a~s~~ei~~~a~~~~~~~~e~L--- 147 (348)
T PRK08445 74 SFEEIDKKIEELLAIGGTQI--LFQGGVHPKLKIEWYENLVSHIAQKYPT-ITIHGFSAVEIDYIAKISKISIKEVL--- 147 (348)
T ss_pred CHHHHHHHHHHHHHcCCCEE--EEecCCCCCCCHHHHHHHHHHHHHHCCC-cEEEEccHHHHHHHHHHhCCCHHHHH---
Confidence 67888888999999999987 4332333345678888889999987765 34332 1222334223333
Q ss_pred HHHHHHcCCCE
Q psy965 195 SMTAMFAGSDF 205 (214)
Q Consensus 195 ~~ia~~aGaDF 205 (214)
+...+||.|-
T Consensus 148 -~~LkeAGl~~ 157 (348)
T PRK08445 148 -ERLQAKGLSS 157 (348)
T ss_pred -HHHHHcCCCC
Confidence 3456778773
No 269
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=48.96 E-value=2.1e+02 Score=26.08 Aligned_cols=100 Identities=11% Similarity=0.094 Sum_probs=65.7
Q ss_pred HhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEE
Q psy965 99 DNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKT 178 (214)
Q Consensus 99 ~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKv 178 (214)
++|......+++-+. .+++ ..+.+.-..+++++++.|.+-+=+=+ | ++.+.-.+=+++++++.|+ -+++
T Consensus 117 ~LLGg~~~~v~~y~s-~~~~--~~~~e~~~~~a~~~~~~Gf~~~Kikv--g----~~~~~d~~~v~~vRe~~G~--~~~l 185 (352)
T cd03328 117 RLLGRAHDSVPVYGS-GGFT--SYDDDRLREQLSGWVAQGIPRVKMKI--G----RDPRRDPDRVAAARRAIGP--DAEL 185 (352)
T ss_pred HHhcCCCCCeEEEEe-cCCC--CCCHHHHHHHHHHHHHCCCCEEEeec--C----CCHHHHHHHHHHHHHHcCC--CCeE
Confidence 455421234555444 3453 23556678899999999988766532 2 2344555667888888875 4788
Q ss_pred EEeccCCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 179 ILAVGELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 179 IlEt~~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
++....--+.++-.+..+...+.|..|+--.
T Consensus 186 ~vDaN~~~~~~~A~~~~~~l~~~~~~~~EeP 216 (352)
T cd03328 186 FVDANGAYSRKQALALARAFADEGVTWFEEP 216 (352)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCcchhhCC
Confidence 8987763377777787777778888887543
No 270
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=48.89 E-value=62 Score=30.06 Aligned_cols=77 Identities=16% Similarity=0.076 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCCEEEEecC-hhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHH---HHHHHHHHHHcCC
Q psy965 128 LHEIELLAKQKVDEVDIVIQ-RSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSEN---IYCASMTAMFAGS 203 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin-~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~---i~~A~~ia~~aGa 203 (214)
+...+.|+++|||.|=+--. +++ +....+.-.+|+++.++.+|. .-.|+.+-...+...++ +.+.-.-+.+.|+
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~-R~~a~nfs~~~l~e~i~~ah~-~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~Gv 93 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGL-RRRALNFSVEDLAEAVELAHS-AGKKVYVAVNTLLHNDELETLERYLDRLVELGV 93 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCccccc-ccccccCCHHHHHHHHHHHHH-cCCeEEEEeccccccchhhHHHHHHHHHHHcCC
Confidence 45566777777777655544 221 111123445567777776664 23344444443332222 2355566667777
Q ss_pred CEE
Q psy965 204 DFI 206 (214)
Q Consensus 204 DFI 206 (214)
|-|
T Consensus 94 Dav 96 (347)
T COG0826 94 DAV 96 (347)
T ss_pred CEE
Confidence 765
No 271
>PRK12999 pyruvate carboxylase; Reviewed
Probab=48.78 E-value=88 Score=33.68 Aligned_cols=80 Identities=20% Similarity=0.169 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHc
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 201 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~a 201 (214)
++++-=+.-++++.+.||+.|=+.=-.|.+ ....+++-++++++..+ +-|+.--=+|.-.-...+..|++|
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l---~P~~~~~lv~~lk~~~~------ipi~~H~Hnt~Gla~an~laA~~a 758 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHILAIKDMAGLL---KPAAAYELVSALKEEVD------LPIHLHTHDTSGNGLATYLAAAEA 758 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCccCCC---CHHHHHHHHHHHHHHcC------CeEEEEeCCCCchHHHHHHHHHHh
Confidence 577777777889999999988333222332 36778888888887652 234444333433344455678999
Q ss_pred CCCEEEcCC
Q psy965 202 GSDFIKTSG 210 (214)
Q Consensus 202 GaDFIKTST 210 (214)
|+|+|-|+-
T Consensus 759 Gad~vD~av 767 (1146)
T PRK12999 759 GVDIVDVAV 767 (1146)
T ss_pred CCCEEEecc
Confidence 999999874
No 272
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=48.39 E-value=2.6e+02 Score=26.92 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcC-CceEE--EEEeccCCCCHHHHHHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMK--TILAVGELKTSENIYCASM 196 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~-~~~lK--vIlEt~~L~t~e~i~~A~~ 196 (214)
+..|-.+.-..++.|++.|.|.|-+....+.+. . +...++.++. +.++- +-.+.+--.+.+-..+.++
T Consensus 91 ~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~-----n----~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~ 161 (448)
T PRK12331 91 RNYADDVVESFVQKSVENGIDIIRIFDALNDVR-----N----LETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAK 161 (448)
T ss_pred ccCchhhHHHHHHHHHHCCCCEEEEEEecCcHH-----H----HHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHH
Confidence 556777888899999999999999998776653 1 2223333321 12322 2233332336677778888
Q ss_pred HHHHcCCCEE--EcCCC
Q psy965 197 TAMFAGSDFI--KTSGS 211 (214)
Q Consensus 197 ia~~aGaDFI--KTSTG 211 (214)
.+.++|+|-| |=++|
T Consensus 162 ~l~~~Gad~I~i~Dt~G 178 (448)
T PRK12331 162 EMQEMGADSICIKDMAG 178 (448)
T ss_pred HHHHcCCCEEEEcCCCC
Confidence 8899999974 44444
No 273
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=48.26 E-value=84 Score=28.76 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEE
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKT 178 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKv 178 (214)
.+.+.-+.+++++.+.|++|+.++- |.-..-.++++.+=++.|++..++ .+++.
T Consensus 79 l~~eeI~~~a~~~~~~G~~~v~l~~--G~~p~~~~~~~~e~i~~Ik~~~p~-i~i~~ 132 (351)
T TIGR03700 79 MSLEEIVARVKEAYAPGATEVHIVG--GLHPNLPFEWYLDMIRTLKEAYPD-LHVKA 132 (351)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEec--CCCCCCCHHHHHHHHHHHHHHCCC-ceEEe
Confidence 4678888899999999999999982 221233466777777777765544 44444
No 274
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=48.15 E-value=14 Score=27.17 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=23.2
Q ss_pred HHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHh
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKC 170 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~ 170 (214)
++.+.++.| +||||||...=. .+....+-..++.+|
T Consensus 51 ~i~~~i~~~--~IdlVIn~~~~~---~~~~~~dg~~irr~a 86 (95)
T PF02142_consen 51 QIMDLIKNG--KIDLVINTPYPF---SDQEHTDGYKIRRAA 86 (95)
T ss_dssp HHHHHHHTT--SEEEEEEE--TH---HHHHTHHHHHHHHHH
T ss_pred HHHHHHHcC--CeEEEEEeCCCC---cccccCCcHHHHHHH
Confidence 777888887 999999985322 223324666666665
No 275
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=48.01 E-value=1.1e+02 Score=25.35 Aligned_cols=65 Identities=18% Similarity=0.382 Sum_probs=44.0
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
..-++.+++.|++-|.+-.+- ++ -.+.++.+++.++ ++.+-.|...+.+++ ..+.++|+|||-
T Consensus 19 ~~~~~~l~~~G~~~vev~~~~-----~~---~~~~i~~l~~~~~-----~~~iGag~v~~~~~~----~~a~~~Ga~~i~ 81 (190)
T cd00452 19 LALAEALIEGGIRAIEITLRT-----PG---ALEAIRALRKEFP-----EALIGAGTVLTPEQA----DAAIAAGAQFIV 81 (190)
T ss_pred HHHHHHHHHCCCCEEEEeCCC-----hh---HHHHHHHHHHHCC-----CCEEEEEeCCCHHHH----HHHHHcCCCEEE
Confidence 345788888999998887653 33 3336777766544 255566666566655 467789999997
Q ss_pred cC
Q psy965 208 TS 209 (214)
Q Consensus 208 TS 209 (214)
++
T Consensus 82 ~p 83 (190)
T cd00452 82 SP 83 (190)
T ss_pred cC
Confidence 55
No 276
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=47.79 E-value=1.5e+02 Score=27.36 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecChhH-hhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHH
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDIVIQRSL-VLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 199 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~-l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~ 199 (214)
..+.+.-+.+++.+.+.|+++|=+|- |. ...-+.+++.+=++++++..++ .. ++.+-+ +.++. ....
T Consensus 103 ~ls~eEI~~~a~~~~~~Gv~~i~lvg--Ge~p~~~~~e~l~~~i~~Ik~~~p~-i~----i~~g~l-t~e~l----~~Lk 170 (371)
T PRK09240 103 TLDEEEIEREMAAIKKLGFEHILLLT--GEHEAKVGVDYIRRALPIAREYFSS-VS----IEVQPL-SEEEY----AELV 170 (371)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEee--CCCCCCCCHHHHHHHHHHHHHhCCC-ce----eccCCC-CHHHH----HHHH
Confidence 45778888899999999999999884 22 2334678888888888765543 33 356767 65665 4667
Q ss_pred HcCCCEEE
Q psy965 200 FAGSDFIK 207 (214)
Q Consensus 200 ~aGaDFIK 207 (214)
+||++-+-
T Consensus 171 ~aGv~r~~ 178 (371)
T PRK09240 171 ELGLDGVT 178 (371)
T ss_pred HcCCCEEE
Confidence 88988553
No 277
>PRK00208 thiG thiazole synthase; Reviewed
Probab=47.56 E-value=54 Score=29.36 Aligned_cols=168 Identities=16% Similarity=0.088 Sum_probs=89.3
Q ss_pred ccCHHHHHHHHHHhhhhhhhhhHh--HHHHHHHhhhhhcccCCC---CCCCHHHHHHHHHHhhccCchhhhcccc-----
Q psy965 18 QINTKYLEDLTRQFEAVDLSRIKN--KKSLLLKIIEFIDLTTLS---GDDTEAVVETLTLKAIQPLSEELKEKVL----- 87 (214)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ID~TlL~---~~~T~~~I~~lc~eA~~~f~~~~~~~~~----- 87 (214)
.+=..+++..-.++-||.|||+.. ...-+.+.+.--..++|- +--|.+|-.+..+-|++-|..+.. +.-
T Consensus 24 ~~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~i-KlEVi~d~ 102 (250)
T PRK00208 24 QVMQEAIEASGAEIVTVALRRVNLGQGGDNLLDLLPPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWI-KLEVIGDD 102 (250)
T ss_pred HHHHHHHHHhCCCeEEEEEEeecCCCCcchHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeE-EEEEecCC
Confidence 334455666667778888898632 222332222322344443 345777777777777754331110 010
Q ss_pred -ccCcc---cHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhH-HHHH
Q psy965 88 -RGFVS---TVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPE-LFSE 162 (214)
Q Consensus 88 -cv~P~---~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~-v~~E 162 (214)
.-.|. -|+.+++..+ .+..+.-+. .. -..+++...+.|++-| +..+.....+..- -.+-
T Consensus 103 ~~llpd~~~tv~aa~~L~~---~Gf~vlpyc------~~----d~~~ak~l~~~G~~~v---mPlg~pIGsg~gi~~~~~ 166 (250)
T PRK00208 103 KTLLPDPIETLKAAEILVK---EGFVVLPYC------TD----DPVLAKRLEEAGCAAV---MPLGAPIGSGLGLLNPYN 166 (250)
T ss_pred CCCCcCHHHHHHHHHHHHH---CCCEEEEEe------CC----CHHHHHHHHHcCCCEe---CCCCcCCCCCCCCCCHHH
Confidence 11332 2344444333 344443221 11 1356777778898876 4433333222111 0233
Q ss_pred HHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 163 VKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 163 i~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
++.+++.. .+.||.|-| +.+.++.+ .||+.|+|-|=-.||
T Consensus 167 i~~i~e~~----~vpVIveaG-I~tpeda~----~AmelGAdgVlV~SA 206 (250)
T PRK00208 167 LRIIIEQA----DVPVIVDAG-IGTPSDAA----QAMELGADAVLLNTA 206 (250)
T ss_pred HHHHHHhc----CCeEEEeCC-CCCHHHHH----HHHHcCCCEEEEChH
Confidence 66666542 378999988 55888875 566789999877766
No 278
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=47.50 E-value=69 Score=27.31 Aligned_cols=71 Identities=10% Similarity=0.139 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHCCCCEEEEecChhHhhcCChhHH-HHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCC
Q psy965 126 TRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPEL-FSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSD 204 (214)
Q Consensus 126 ~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v-~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaD 204 (214)
+...+++.|.++|||-|=|+.-- .|.+ +| .++.+++.+.+++ ..-+|-+=+. - +.+++. +++...|.|
T Consensus 9 t~~eda~~~~~~GaD~iGfIf~~---~SpR--~V~~~~a~~i~~~~~~-~~~~VgVf~~-~-~~~~i~---~~~~~~~~d 77 (207)
T PRK13958 9 TTIKDVTAASQLPIDAIGFIHYE---KSKR--HQTITQIKKLASAVPN-HIDKVCVVVN-P-DLTTIE---HILSNTSIN 77 (207)
T ss_pred CcHHHHHHHHHcCCCEEEEecCC---CCcc--cCCHHHHHHHHHhCCC-CCCEEEEEeC-C-CHHHHH---HHHHhCCCC
Confidence 35678999999999999998322 1222 23 4566667766654 2223322222 1 445554 455678888
Q ss_pred EEE
Q psy965 205 FIK 207 (214)
Q Consensus 205 FIK 207 (214)
+|.
T Consensus 78 ~vQ 80 (207)
T PRK13958 78 TIQ 80 (207)
T ss_pred EEE
Confidence 875
No 279
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=47.39 E-value=1.1e+02 Score=29.30 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=46.1
Q ss_pred HHHHHHHHCCCCEEEEecChh-----HhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCC
Q psy965 129 HEIELLAKQKVDEVDIVIQRS-----LVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGS 203 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~-----~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGa 203 (214)
.+++.+++.|||-|.+=+--| ....|--..-..-+..+.+++.. ..+.||-|-|.- +.+.+.|| +.+||
T Consensus 206 e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~-~~vpVIAdGGI~-~~~Di~KA----LalGA 279 (404)
T PRK06843 206 EAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKN-TNICIIADGGIR-FSGDVVKA----IAAGA 279 (404)
T ss_pred HHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhh-cCCeEEEeCCCC-CHHHHHHH----HHcCC
Confidence 577888999999987543222 22223111122233334444443 346789888855 77888654 56899
Q ss_pred CEEEcCCCC
Q psy965 204 DFIKTSGSI 212 (214)
Q Consensus 204 DFIKTSTGf 212 (214)
|+|--.+-|
T Consensus 280 ~aVmvGs~~ 288 (404)
T PRK06843 280 DSVMIGNLF 288 (404)
T ss_pred CEEEEccee
Confidence 998655433
No 280
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=47.21 E-value=1.8e+02 Score=25.75 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=14.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 183 GELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 183 ~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
..| ..|+.......|.+.|.++|=
T Consensus 124 pDL-p~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 124 PDL-PPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred CCC-CHHHHHHHHHHHHHcCCcEEE
Confidence 345 456666666666667766664
No 281
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=47.14 E-value=2.2e+02 Score=25.79 Aligned_cols=107 Identities=14% Similarity=0.190 Sum_probs=57.8
Q ss_pred cccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHH-HHHHHHCCCCEEEEecChh--HhhcCChhHHHHHHHHHH
Q psy965 91 VSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHE-IELLAKQKVDEVDIVIQRS--LVLNNQWPELFSEVKQMK 167 (214)
Q Consensus 91 P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E-~~~Ai~~GAdEID~Vin~~--~l~sg~~~~v~~Ei~~v~ 167 (214)
|..+....+.+.+ ..++++..- +. .|..+......+ ++.+.+.|++.|.+- .+. ...+|..+ .+-+++++
T Consensus 118 p~~~~eiv~av~~-a~d~pv~vK-iR--~G~~~~~~~~~~~a~~le~~G~d~i~vh-~rt~~~~~~G~a~--~~~i~~ik 190 (321)
T PRK10415 118 PDLVKSILTEVVN-AVDVPVTLK-IR--TGWAPEHRNCVEIAQLAEDCGIQALTIH-GRTRACLFNGEAE--YDSIRAVK 190 (321)
T ss_pred HHHHHHHHHHHHH-hcCCceEEE-EE--ccccCCcchHHHHHHHHHHhCCCEEEEe-cCccccccCCCcC--hHHHHHHH
Confidence 5556655555543 335565544 22 333332223333 344667899998654 221 12233221 24556666
Q ss_pred HHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 168 EKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 168 ~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
+.++ +. |+-.|-..+.+...++ ....|+|.|--++|.
T Consensus 191 ~~~~----iP-VI~nGgI~s~~da~~~---l~~~gadgVmiGR~~ 227 (321)
T PRK10415 191 QKVS----IP-VIANGDITDPLKARAV---LDYTGADALMIGRAA 227 (321)
T ss_pred HhcC----Cc-EEEeCCCCCHHHHHHH---HhccCCCEEEEChHh
Confidence 6543 34 4456667686665433 344799999888774
No 282
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=46.93 E-value=1.3e+02 Score=26.10 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=60.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHH
Q psy965 117 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASM 196 (214)
Q Consensus 117 FP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ 196 (214)
+..+..+-+.+..-++.+++.||| =+.-|-|.-..| .-.+.++.|++.+++ .++++--=| ..|.++..
T Consensus 128 lEt~~L~~e~i~~a~~~~~~agad--fIKTsTG~~~~g---at~~~v~~m~~~~~~--~~~IKasGG-Irt~~~a~---- 195 (221)
T PRK00507 128 IETCLLTDEEKVKACEIAKEAGAD--FVKTSTGFSTGG---ATVEDVKLMRETVGP--RVGVKASGG-IRTLEDAL---- 195 (221)
T ss_pred eecCcCCHHHHHHHHHHHHHhCCC--EEEcCCCCCCCC---CCHHHHHHHHHHhCC--CceEEeeCC-cCCHHHHH----
Confidence 667888888888888999999999 345666654334 445778888887775 355554444 65766553
Q ss_pred HHHHcCCCEEEcCCCCC
Q psy965 197 TAMFAGSDFIKTSGSIQ 213 (214)
Q Consensus 197 ia~~aGaDFIKTSTGf~ 213 (214)
--+++||+-|=||+|..
T Consensus 196 ~~i~aGA~riGtS~~~~ 212 (221)
T PRK00507 196 AMIEAGATRLGTSAGVA 212 (221)
T ss_pred HHHHcCcceEccCcHHH
Confidence 34578999999999853
No 283
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=46.75 E-value=2.9e+02 Score=27.09 Aligned_cols=108 Identities=15% Similarity=0.033 Sum_probs=69.5
Q ss_pred cHHHHHHhhhcCCCCCCeEEEec----CCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHH
Q psy965 93 TVWHGSDNLKTKLVYQPCLSQPA----GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKE 168 (214)
Q Consensus 93 ~V~~a~~~L~~~gs~v~vatV~i----gFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~ 168 (214)
+++..++.+ .++++... . ..-.+..+-++.-..++.|+++|.|-|-+....+.+ +.+..=+..+++
T Consensus 66 rlr~lr~~~----~nt~lqmL-~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv-----~nl~~ai~~vk~ 135 (499)
T PRK12330 66 RLRTFRKLM----PNSRLQML-LRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP-----RNLEHAMKAVKK 135 (499)
T ss_pred HHHHHHHhC----CCCeEEEE-EcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChH-----HHHHHHHHHHHH
Confidence 455555554 34566655 2 122455666688889999999999999998888766 445555566655
Q ss_pred HhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE--EcCCC
Q psy965 169 KCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI--KTSGS 211 (214)
Q Consensus 169 a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI--KTSTG 211 (214)
+ +......+-.-.+.--|.+...+.++.+.++|+|-| |-++|
T Consensus 136 a-g~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaG 179 (499)
T PRK12330 136 V-GKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMAA 179 (499)
T ss_pred h-CCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcc
Confidence 3 321112222222334488888899999999999975 55555
No 284
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=46.69 E-value=73 Score=27.98 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 158 ELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 158 ~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
.+..-+++|+..++. .++=+=+|+|+-.+.+++.+.++..+++|++-||
T Consensus 59 em~~~~~~I~r~~~~-~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~ 107 (240)
T cd06556 59 DVPYHVRAVRRGAPL-ALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVK 107 (240)
T ss_pred HHHHHHHHHHhhCCC-CCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEE
Confidence 333333444433322 2444444555443334444444444445555444
No 285
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=46.51 E-value=74 Score=26.77 Aligned_cols=73 Identities=18% Similarity=0.080 Sum_probs=42.7
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhc---CChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCE
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLN---NQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF 205 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~s---g~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDF 205 (214)
.|++.+.+.|+|-|- +|.+.+-. .....-.+-++++++.+ .+.||.+-| +.+.+++.+ +++.|+|+
T Consensus 130 ee~~~a~~~G~d~i~--~~~~g~t~~~~~~~~~~~~~i~~i~~~~----~iPvia~GG-I~t~~~~~~----~l~~Gadg 198 (221)
T PRK01130 130 EEGLAAQKLGFDFIG--TTLSGYTEETKKPEEPDFALLKELLKAV----GCPVIAEGR-INTPEQAKK----ALELGAHA 198 (221)
T ss_pred HHHHHHHHcCCCEEE--cCCceeecCCCCCCCcCHHHHHHHHHhC----CCCEEEECC-CCCHHHHHH----HHHCCCCE
Confidence 467889999999863 33211100 11112234555565544 256777777 557777754 44579999
Q ss_pred EEcCCCC
Q psy965 206 IKTSGSI 212 (214)
Q Consensus 206 IKTSTGf 212 (214)
|=-+|.+
T Consensus 199 V~iGsai 205 (221)
T PRK01130 199 VVVGGAI 205 (221)
T ss_pred EEEchHh
Confidence 8766653
No 286
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=46.50 E-value=1.2e+02 Score=24.91 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=41.7
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
..++.+++.|++-|-+-. ++.+...+.+.++++.+.|.+ .-+++|+. +. .+.+.++|+|||-.
T Consensus 25 ~~~~~~~~~gv~~v~lr~-----~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~-------~~----~~~a~~~gad~vh~ 87 (212)
T PRK00043 25 EVVEAALEGGVTLVQLRE-----KGLDTRERLELARALKELCRR-YGVPLIVN-------DR----VDLALAVGADGVHL 87 (212)
T ss_pred HHHHHHHhcCCCEEEEeC-----CCCCHHHHHHHHHHHHHHHHH-hCCeEEEe-------Ch----HHHHHHcCCCEEec
Confidence 457788899987653322 233456667778888877764 34566663 12 35778889999876
Q ss_pred C
Q psy965 209 S 209 (214)
Q Consensus 209 S 209 (214)
+
T Consensus 88 ~ 88 (212)
T PRK00043 88 G 88 (212)
T ss_pred C
Confidence 4
No 287
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=46.30 E-value=1e+02 Score=26.60 Aligned_cols=79 Identities=10% Similarity=-0.005 Sum_probs=38.3
Q ss_pred HHHHHHCCCCEEEEecChhH-hhcCChhHHHHHHHHHHHHhcCCc-eEEEEEeccCCC---C---------HHHHHHHHH
Q psy965 131 IELLAKQKVDEVDIVIQRSL-VLNNQWPELFSEVKQMKEKCGEKI-HMKTILAVGELK---T---------SENIYCASM 196 (214)
Q Consensus 131 ~~~Ai~~GAdEID~Vin~~~-l~sg~~~~v~~Ei~~v~~a~~~~~-~lKvIlEt~~L~---t---------~e~i~~A~~ 196 (214)
.+.|.+.|.+-|++-++-.. ...... -.++++++++++.. . .+.+.+..+++. + .+...++++
T Consensus 16 l~~a~~~G~d~vEl~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~ 92 (279)
T cd00019 16 LKRAKEIGFDTVAMFLGNPRSWLSRPL--KKERAEKFKAIAEE-GPSICLSVHAPYLINLASPDKEKREKSIERLKDEIE 92 (279)
T ss_pred HHHHHHcCCCEEEEEcCCCCccCCCCC--CHHHHHHHHHHHHH-cCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHH
Confidence 35566677766666554321 111110 12445555554432 1 233444333321 1 234566777
Q ss_pred HHHHcCCCEEEcCCCC
Q psy965 197 TAMFAGSDFIKTSGSI 212 (214)
Q Consensus 197 ia~~aGaDFIKTSTGf 212 (214)
+|...|+++|-.-.|+
T Consensus 93 ~A~~lG~~~v~~~~g~ 108 (279)
T cd00019 93 RCEELGIRLLVFHPGS 108 (279)
T ss_pred HHHHcCCCEEEECCCC
Confidence 7777788777665553
No 288
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=46.29 E-value=2e+02 Score=31.05 Aligned_cols=81 Identities=19% Similarity=0.105 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHH
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMF 200 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~ 200 (214)
.++++-=+.-++++.+.||+.|=+-=-.|.+ ....+++=++++++..+ +-|+.--=+|...-...+..|++
T Consensus 685 ~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll---~P~~~~~Lv~~lk~~~~------~pi~~H~Hdt~Gla~an~laA~e 755 (1143)
T TIGR01235 685 KYDLKYYTNLAVELEKAGAHILGIKDMAGLL---KPAAAKLLIKALREKTD------LPIHFHTHDTSGIAVASMLAAVE 755 (1143)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCCc---CHHHHHHHHHHHHHhcC------CeEEEEECCCCCcHHHHHHHHHH
Confidence 3456766777888999999987443222322 46677888888887542 22333323333333345667889
Q ss_pred cCCCEEEcCC
Q psy965 201 AGSDFIKTSG 210 (214)
Q Consensus 201 aGaDFIKTST 210 (214)
||+|.|-||-
T Consensus 756 aGad~vD~ai 765 (1143)
T TIGR01235 756 AGVDVVDVAV 765 (1143)
T ss_pred hCCCEEEecc
Confidence 9999999885
No 289
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=45.91 E-value=24 Score=30.89 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=41.3
Q ss_pred HHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 131 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 131 ~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
+....+.|++-|-|- +.+-+ .-.+|++++.++|.. .-+.. =-||=+ +.++.....++|.++|+..|
T Consensus 141 iaml~dmG~~SiKff-Pm~Gl------~~leE~~avAkA~a~-~g~~l-EPTGGI-dl~N~~~I~~i~l~aGv~~v 206 (218)
T PF07071_consen 141 IAMLKDMGGSSIKFF-PMGGL------KHLEELKAVAKACAR-NGFTL-EPTGGI-DLDNFEEIVKICLDAGVEKV 206 (218)
T ss_dssp HHHHHHTT--EEEE----TTT------TTHHHHHHHHHHHHH-CT-EE-EEBSS---TTTHHHHHHHHHHTT-S-B
T ss_pred HHHHHHcCCCeeeEe-ecCCc------ccHHHHHHHHHHHHH-cCcee-CCcCCc-CHHHHHHHHHHHHHcCCCee
Confidence 344455799998876 34323 347899999999954 23444 558888 77888888999999998764
No 290
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=45.73 E-value=1.5e+02 Score=23.48 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=43.0
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
..++.+++.|++-|- +.. ++++.......+.++++.|.. ..+++++.. . .+++.++|+|+|-.
T Consensus 16 ~~l~~l~~~g~~~i~--lr~---~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~-------~----~~~a~~~g~~~vh~ 78 (196)
T cd00564 16 EVVEAALKGGVTLVQ--LRE---KDLSARELLELARALRELCRK-YGVPLIIND-------R----VDLALAVGADGVHL 78 (196)
T ss_pred HHHHHHHhcCCCEEE--EeC---CCCCHHHHHHHHHHHHHHHHH-hCCeEEEeC-------h----HHHHHHcCCCEEec
Confidence 457778888987542 222 455666777778888877753 446677642 1 34678899999976
Q ss_pred CC
Q psy965 209 SG 210 (214)
Q Consensus 209 ST 210 (214)
+.
T Consensus 79 ~~ 80 (196)
T cd00564 79 GQ 80 (196)
T ss_pred Cc
Confidence 64
No 291
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.61 E-value=48 Score=30.03 Aligned_cols=84 Identities=13% Similarity=0.035 Sum_probs=50.5
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCC-----EEEEec---ChhHhhcCChhHHHHHHHHHHHHhcCCceE
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVD-----EVDIVI---QRSLVLNNQWPELFSEVKQMKEKCGEKIHM 176 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAd-----EID~Vi---n~~~l~sg~~~~v~~Ei~~v~~a~~~~~~l 176 (214)
+++++|++. =.++...|..|-+....-|+. --|+|+ |-=.+. |. +.+-++.+++.++. ..
T Consensus 130 ~~~~~i~~T------RKt~Pg~R~l~k~AV~~GGg~~HR~gL~d~ilikdNHi~~~-g~---i~~av~~~r~~~~~--~~ 197 (288)
T PRK07428 130 DLPTQLVDT------RKTTPGLRLLEKYATQVGGAINHRMGLDDAVMIKDNHIQAA-GG---IGEAITRIRQRIPY--PL 197 (288)
T ss_pred CCCeEEEec------CCCCCcchHHHHHHHHhcCcccccCCchheeeecHHHHHHh-CC---HHHHHHHHHHhCCC--CC
Confidence 566665554 344455666665555555553 234442 111122 22 77788888887763 47
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 177 KTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 177 KvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
|+.+|+. |.+|..+ |.++|+|+|-
T Consensus 198 ~I~VEv~---tleea~e----A~~~GaD~I~ 221 (288)
T PRK07428 198 TIEVETE---TLEQVQE----ALEYGADIIM 221 (288)
T ss_pred EEEEECC---CHHHHHH----HHHcCCCEEE
Confidence 8999998 4477654 4479999984
No 292
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=45.47 E-value=81 Score=26.19 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=34.9
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEec-cCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV-GELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt-~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
..|+++|++.|+|-|= ++- ...+.+.+=+..++ ..++ . +.||. |=+ |.+++..-+ ..|+|+|
T Consensus 90 ~ee~~ea~~~g~d~I~--lD~-----~~~~~~~~~v~~l~-~~~~--~--v~ie~SGGI-~~~ni~~ya----~~gvD~i 152 (169)
T PF01729_consen 90 LEEAEEALEAGADIIM--LDN-----MSPEDLKEAVEELR-ELNP--R--VKIEASGGI-TLENIAEYA----KTGVDVI 152 (169)
T ss_dssp HHHHHHHHHTT-SEEE--EES------CHHHHHHHHHHHH-HHTT--T--SEEEEESSS-STTTHHHHH----HTT-SEE
T ss_pred HHHHHHHHHhCCCEEE--ecC-----cCHHHHHHHHHHHh-hcCC--c--EEEEEECCC-CHHHHHHHH----hcCCCEE
Confidence 5799999999977541 121 12333333333332 3333 2 44444 447 777775433 7799999
Q ss_pred EcC
Q psy965 207 KTS 209 (214)
Q Consensus 207 KTS 209 (214)
-+|
T Consensus 153 svg 155 (169)
T PF01729_consen 153 SVG 155 (169)
T ss_dssp EEC
T ss_pred EcC
Confidence 765
No 293
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=45.44 E-value=1.1e+02 Score=28.72 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHc
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFA 201 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~a 201 (214)
.+++.++..++.+++.|++.|.+ +.... .....+.|+++++..+. ..+|...-.....+ .-.+.|.++
T Consensus 13 ~~~~~~~~~~~~~~~~Gv~~ie~--g~p~~----~~~~~~~i~~l~~~~~~---~~ii~D~kl~d~g~---~~v~~a~~a 80 (430)
T PRK07028 13 LELDRAVEIAKEAVAGGADWIEA--GTPLI----KSEGMNAIRTLRKNFPD---HTIVADMKTMDTGA---IEVEMAAKA 80 (430)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEe--CCHHH----HHhhHHHHHHHHHHCCC---CEEEEEeeeccchH---HHHHHHHHc
Confidence 46888888999999999999874 11111 11123444444433221 12333322111111 145678888
Q ss_pred CCCEEEc
Q psy965 202 GSDFIKT 208 (214)
Q Consensus 202 GaDFIKT 208 (214)
|+|||-+
T Consensus 81 GAdgV~v 87 (430)
T PRK07028 81 GADIVCI 87 (430)
T ss_pred CCCEEEE
Confidence 9998875
No 294
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=45.34 E-value=1.2e+02 Score=28.62 Aligned_cols=71 Identities=11% Similarity=0.214 Sum_probs=46.2
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
...++.|.+.|++-||+..-=|.-+.+.. .-.+-|.+++++.++ .+.||+.-|-- +...+.||- ..|||+|
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~-a~~~~L~ei~~av~~--~i~vi~dGGIr-~g~Dv~KaL----alGAd~V 309 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQLDGGP-AAFDSLQEVAEAVDK--RVPIVFDSGVR-RGQHVFKAL----ASGADLV 309 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCCCCCC-cHHHHHHHHHHHhCC--CCcEEeeCCcC-CHHHHHHHH----HcCCCEE
Confidence 56788899999999997754442222211 123456777776654 37788887755 767776553 3799987
No 295
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=44.91 E-value=2.5e+02 Score=25.69 Aligned_cols=103 Identities=9% Similarity=-0.067 Sum_probs=64.8
Q ss_pred HhhhcCCCCCCeEEEecCCC---CCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCce
Q psy965 99 DNLKTKLVYQPCLSQPAGFP---SGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIH 175 (214)
Q Consensus 99 ~~L~~~gs~v~vatV~igFP---~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~ 175 (214)
++|......+++-+. ++++ .|..+.+.-..+++++.+.|.+-+=+-+-. ..+++.-.+-++++++++|+ -
T Consensus 117 ~LLGg~~~~v~~y~s-~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~~~----~~~~~~di~~i~~vR~~~G~--~ 189 (368)
T cd03329 117 RLLGGYREKIPAYAS-TMVGDDLEGLESPEAYADFAEECKALGYRAIKLHPWG----PGVVRRDLKACLAVREAVGP--D 189 (368)
T ss_pred HHhhccccceeEEEe-cCCCcccccCCCHHHHHHHHHHHHHcCCCEEEEecCC----chhHHHHHHHHHHHHHHhCC--C
Confidence 345422245665555 4433 355567777889999999999998774210 01145556678888888876 2
Q ss_pred EEEEEecc-CCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 176 MKTILAVG-ELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 176 lKvIlEt~-~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
+++.+... -+ +.++-.+..+...+.|..|+--+
T Consensus 190 ~~l~vDan~~~-~~~~A~~~~~~l~~~~l~~iEeP 223 (368)
T cd03329 190 MRLMHDGAHWY-SRADALRLGRALEELGFFWYEDP 223 (368)
T ss_pred CeEEEECCCCc-CHHHHHHHHHHhhhcCCCeEeCC
Confidence 45666554 36 66666666666667788888643
No 296
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=44.87 E-value=1.4e+02 Score=29.05 Aligned_cols=91 Identities=13% Similarity=0.032 Sum_probs=61.0
Q ss_pred cCCCCCCCC-HHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHH
Q psy965 115 AGFPSGQYL-LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 115 igFP~G~~~-~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~ 193 (214)
.+.|.+..+ .+-=+.-++.+.+.||+.|-+.=-.|. ...+.+++-++.+++..+. .-++.|+.-.=++...-..
T Consensus 135 f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~---~~P~~~~~~i~~l~~~~~~--~~~v~l~~H~HND~GlAvA 209 (494)
T TIGR00973 135 FSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGY---ALPAEYGNLIKGLRENVPN--IDKAILSVHCHNDLGLAVA 209 (494)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCHHHHHHHHHHHHHhhcc--ccCceEEEEeCCCCChHHH
Confidence 578865544 555555566678899998655533443 2456777777788776553 2257788866655555555
Q ss_pred HHHHHHHcCCCEEEcCC
Q psy965 194 ASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 194 A~~ia~~aGaDFIKTST 210 (214)
.+..|+++||+.|-++-
T Consensus 210 NalaAv~aGa~~vd~tv 226 (494)
T TIGR00973 210 NSLAAVQNGARQVECTI 226 (494)
T ss_pred HHHHHHHhCCCEEEEEe
Confidence 67889999999998764
No 297
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=44.68 E-value=1.1e+02 Score=28.14 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=56.6
Q ss_pred cCCCCCCCC-HHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHH
Q psy965 115 AGFPSGQYL-LETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 115 igFP~G~~~-~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~ 193 (214)
++++.+..+ .+-=+.-++.+.+.||+.|-+.=-.|. ...+.+++-++.+++.. ++-|+.-.=++...-..
T Consensus 131 ~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~---~~P~~v~~lv~~l~~~~------~v~l~~H~HNd~GlA~A 201 (365)
T TIGR02660 131 VGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGI---LDPFSTYELVRALRQAV------DLPLEMHAHNDLGMATA 201 (365)
T ss_pred EeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCC---CCHHHHHHHHHHHHHhc------CCeEEEEecCCCChHHH
Confidence 478876655 444444556777899999755544453 34667777777777543 23466665545444445
Q ss_pred HHHHHHHcCCCEEEcCC
Q psy965 194 ASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 194 A~~ia~~aGaDFIKTST 210 (214)
-+..|+++||++|-+|-
T Consensus 202 NalaA~~aGa~~vd~tl 218 (365)
T TIGR02660 202 NTLAAVRAGATHVNTTV 218 (365)
T ss_pred HHHHHHHhCCCEEEEEe
Confidence 56789999999998874
No 298
>PLN02535 glycolate oxidase
Probab=44.61 E-value=96 Score=29.09 Aligned_cols=74 Identities=9% Similarity=0.163 Sum_probs=48.4
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhcCChh-HHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLNNQWP-ELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~sg~~~-~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
.+++.|++.|+|-|++. |.|.- .-+|. .-.+-+.++++++++ .+.||..-|.= +...+.|| +..|||+|-
T Consensus 235 ~dA~~a~~~GvD~I~vs-n~GGr-~~d~~~~t~~~L~ev~~av~~--~ipVi~dGGIr-~g~Dv~KA----LalGA~aV~ 305 (364)
T PLN02535 235 EDAIKAVEVGVAGIIVS-NHGAR-QLDYSPATISVLEEVVQAVGG--RVPVLLDGGVR-RGTDVFKA----LALGAQAVL 305 (364)
T ss_pred HHHHHHHhcCCCEEEEe-CCCcC-CCCCChHHHHHHHHHHHHHhc--CCCEEeeCCCC-CHHHHHHH----HHcCCCEEE
Confidence 56899999999999775 54421 11222 224566666666654 37788888855 76777654 456999886
Q ss_pred cCCC
Q psy965 208 TSGS 211 (214)
Q Consensus 208 TSTG 211 (214)
-++-
T Consensus 306 vGr~ 309 (364)
T PLN02535 306 VGRP 309 (364)
T ss_pred ECHH
Confidence 6553
No 299
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=44.56 E-value=59 Score=24.74 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=49.2
Q ss_pred HHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 132 ELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 132 ~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+..++.-|..++-++++| ++|-.+.+.+||..-.+. ++ .+||-+=...- .+...-|-++|...|+.+|.
T Consensus 6 r~~Lr~~ah~l~p~v~IG--K~Glt~~vi~ei~~aL~~-hE--LIKVkvl~~~~--~~~~e~a~~i~~~~~a~~Vq 74 (95)
T TIGR00253 6 KRHLRGKAHHLKPVVLVG--KNGLTEGVIKEIEQALEH-RE--LIKVKVATEDR--EDKTLIAEALVKETGACNVQ 74 (95)
T ss_pred HHHHHHHhCCCCCeEEEC--CCCCCHHHHHHHHHHHHh-CC--cEEEEecCCCh--hHHHHHHHHHHHHHCCEEEE
Confidence 556666788888899999 899999999999887753 33 45665433222 12334566888899999986
No 300
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=44.13 E-value=2.1e+02 Score=26.91 Aligned_cols=124 Identities=11% Similarity=0.014 Sum_probs=74.6
Q ss_pred CCCCHHHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCC
Q psy965 60 GDDTEAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKV 139 (214)
Q Consensus 60 ~~~T~~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GA 139 (214)
+..|.++++++-+-.. ..++.|..-..+.+.|++ ..++|.... .+|.|...+..=+.++.+....-+
T Consensus 213 gg~~~~~i~~~~~A~~----------niv~~~~~~~~~a~~Le~-~~giP~~~~--~~p~G~~~t~~~l~~l~~~~g~~~ 279 (435)
T cd01974 213 GGTTLEELKDAGNAKA----------TLALQEYATEKTAKFLEK-KCKVPVETL--NMPIGVAATDEFLMALSELTGKPI 279 (435)
T ss_pred CCCCHHHHHhhccCcE----------EEEECccccHHHHHHHHH-HhCCCeeec--CCCcChHHHHHHHHHHHHHhCCCC
Confidence 4678899888644332 124566665667778875 467775555 799999999999988877754321
Q ss_pred CEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 140 DEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 140 dEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
. .......+.+.+.+........+ -||++-.+ .+...-.++...+.|.+-+.-+|++
T Consensus 280 ~---------~~i~~er~~~~~~~~~~~~~l~g---krv~i~g~----~~~~~~la~~L~elGm~v~~~~~~~ 336 (435)
T cd01974 280 P---------EELEEERGRLVDAMTDSHQYLHG---KKFALYGD----PDFLIGLTSFLLELGMEPVHVLTGN 336 (435)
T ss_pred C---------HHHHHHHHHHHHHHHHHHHhcCC---CEEEEEcC----hHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 1 11122223344444444433333 35555432 2345566677779999987665543
No 301
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=44.00 E-value=2.3e+02 Score=24.97 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHH
Q psy965 157 PELFSEVKQMKE 168 (214)
Q Consensus 157 ~~v~~Ei~~v~~ 168 (214)
+.+.+.++++++
T Consensus 72 ~~~~~~v~~ir~ 83 (256)
T TIGR00262 72 EKCFELLKKVRQ 83 (256)
T ss_pred HHHHHHHHHHHh
Confidence 455555555554
No 302
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=43.93 E-value=1e+02 Score=29.59 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=72.6
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHh-cCCce-----EEE
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKC-GEKIH-----MKT 178 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~-~~~~~-----lKv 178 (214)
|..+||=+= +|=.......+.-+..++.|++.|||- |++++ -.||.+.+++.|-.-...- |- .| .+.
T Consensus 58 glrtKVNaN-IGtS~~~~d~~~E~~K~~~A~~~GADt---iMDLS--tGgdl~~iR~~il~~s~vpvGT-VPiYqa~~~~ 130 (423)
T TIGR00190 58 NLRTKVNAN-IGTSADTSDIEEEVEKALIAIKYGADT---VMDLS--TGGDLDEIRKAILDAVPVPVGT-VPIYQAAEKV 130 (423)
T ss_pred CceeEEEee-ecCCCCCCCHHHHHHHHHHHHHcCCCe---Eeecc--CCCCHHHHHHHHHHcCCCCccC-ccHHHHHHHh
Confidence 566788888 799999999999999999999999986 56666 5689999998876544321 11 11 111
Q ss_pred EEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 179 ILAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 179 IlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
+=..-.+ |.+++-++.+-=.+-|+||+--=.|
T Consensus 131 ~~~~~~m-t~d~~~~~ie~qa~dGVDfmTiH~G 162 (423)
T TIGR00190 131 HGAVEDM-DEDDMFRAIEKQAKDGVDFMTIHAG 162 (423)
T ss_pred cCChhhC-CHHHHHHHHHHHHHhCCCEEEEccc
Confidence 1134456 7788888888888899999865544
No 303
>PRK09389 (R)-citramalate synthase; Provisional
Probab=43.80 E-value=2.1e+02 Score=27.73 Aligned_cols=177 Identities=7% Similarity=0.041 Sum_probs=94.5
Q ss_pred hcccCHHHHHHHHHHhhhhhhhhhHh------H--HHHHHHhhhhhcccCCCC--CCCHHHHHHHHHHhhccCchhhhcc
Q psy965 16 DIQINTKYLEDLTRQFEAVDLSRIKN------K--KSLLLKIIEFIDLTTLSG--DDTEAVVETLTLKAIQPLSEELKEK 85 (214)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~l~~~~~~ID~TlL~~--~~T~~~I~~lc~eA~~~f~~~~~~~ 85 (214)
.+.++...-.+-+..|.....+.|++ + .++++++...-+.+.+-. ....++|+...+--...+. .
T Consensus 18 g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~g~~~v~-----i 92 (488)
T PRK09389 18 GVSLTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDEGLNAEICSFARAVKVDIDAALECDVDSVH-----L 92 (488)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhcCCCcEEEeecccCHHHHHHHHhCCcCEEE-----E
Confidence 55667777777777777665555522 2 455555554433222221 2346676665542211000 0
Q ss_pred ccccCccc------------HHHHH---HhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhH
Q psy965 86 VLRGFVST------------VWHGS---DNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSL 150 (214)
Q Consensus 86 ~~cv~P~~------------V~~a~---~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~ 150 (214)
+...+|.+ +..+. +..+..|..+.+..- .+ +..+.+-=+.-++.+.+.||+.|-+.=-.|.
T Consensus 93 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e--d~--~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~ 168 (488)
T PRK09389 93 VVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE--DA--SRADLDFLKELYKAGIEAGADRICFCDTVGI 168 (488)
T ss_pred EEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe--eC--CCCCHHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 11223332 22222 333322434443332 32 3455566566677788899999755544443
Q ss_pred hhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCC
Q psy965 151 VLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 151 l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTST 210 (214)
. ....+++-++.+++. .++.|+.-.=++...-..-+..|+++||+.|-+|-
T Consensus 169 ~---~P~~~~~lv~~l~~~------~~v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti 219 (488)
T PRK09389 169 L---TPEKTYELFKRLSEL------VKGPVSIHCHNDFGLAVANTLAALAAGADQVHVTI 219 (488)
T ss_pred c---CHHHHHHHHHHHHhh------cCCeEEEEecCCccHHHHHHHHHHHcCCCEEEEEc
Confidence 2 355566656666542 24567776564544445556789999999998764
No 304
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=43.57 E-value=2.1e+02 Score=24.55 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=33.8
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEec---cCCCCHHHHHH---HHHHHHHc
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV---GELKTSENIYC---ASMTAMFA 201 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt---~~L~t~e~i~~---A~~ia~~a 201 (214)
+..+..|.+.|||-|.++-|+. .|=...=+..++.+++..+ .++-|+|-- ...-|++|+.. -.+.+.++
T Consensus 10 ~~~a~~A~~~GAdRiELc~~l~---~GGlTPS~g~i~~~~~~~~--ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~ 84 (201)
T PF03932_consen 10 LEDALAAEAGGADRIELCSNLE---VGGLTPSLGLIRQAREAVD--IPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLREL 84 (201)
T ss_dssp HHHHHHHHHTT-SEEEEEBTGG---GT-B---HHHHHHHHHHTT--SEEEEE--SSSS-S---HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEECCCcc---CCCcCcCHHHHHHHHhhcC--CceEEEECCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 3456667777777777766543 3444455556666665333 466666643 22234444433 23455556
Q ss_pred CCCEE
Q psy965 202 GSDFI 206 (214)
Q Consensus 202 GaDFI 206 (214)
|+|-+
T Consensus 85 GadG~ 89 (201)
T PF03932_consen 85 GADGF 89 (201)
T ss_dssp T-SEE
T ss_pred CCCee
Confidence 66533
No 305
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=43.34 E-value=2e+02 Score=24.28 Aligned_cols=75 Identities=19% Similarity=0.150 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCC---CHHHHHHHHHHH
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK---TSENIYCASMTA 198 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~---t~e~i~~A~~ia 198 (214)
..-+.+..-.+.+++.|++-||+=++. +.+..+....+. ...|+|+---... +.+++.....-+
T Consensus 73 ~~~~~~~~ll~~~~~~~~d~vDiEl~~------------~~~~~~~~~~~~-~~~kiI~S~H~f~~tp~~~~l~~~~~~~ 139 (225)
T cd00502 73 GSEEEYLELLEEALKLGPDYVDIELDS------------ALLEELINSRKK-GNTKIIGSYHDFSGTPSDEELVSRLEKM 139 (225)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecc------------hHHHHHHHHHHh-CCCEEEEEeccCCCCcCHHHHHHHHHHH
Confidence 345666767788999999999986543 122233332222 3578998776553 246676666677
Q ss_pred HHcCCCEEEcC
Q psy965 199 MFAGSDFIKTS 209 (214)
Q Consensus 199 ~~aGaDFIKTS 209 (214)
...|+|.+|-.
T Consensus 140 ~~~gadivKla 150 (225)
T cd00502 140 AALGADIVKIA 150 (225)
T ss_pred HHhCCCEEEEE
Confidence 77899999854
No 306
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=43.23 E-value=2.3e+02 Score=27.38 Aligned_cols=133 Identities=11% Similarity=-0.053 Sum_probs=73.3
Q ss_pred HHHHHHhhhhhcccC----CCCCCCHHHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCC
Q psy965 43 KSLLLKIIEFIDLTT----LSGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFP 118 (214)
Q Consensus 43 ~~~l~~~~~~ID~Tl----L~~~~T~~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP 118 (214)
..-..+++++|.-.. .++--|++|+..+.. .... .+.....+-.|.--...++.+ ...+|||.+
T Consensus 197 ~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~da---vLiG~~lm~~~d~~~~~~~L~---~~~vKICGi----- 264 (454)
T PRK09427 197 LNRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANG---FLIGSSLMAEDDLELAVRKLI---LGENKVCGL----- 264 (454)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCE---EEECHHHcCCCCHHHHHHHHh---ccccccCCC-----
Confidence 334445566664332 367789999999843 3211 110011133444334444443 357999999
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHH-HHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHH
Q psy965 119 SGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPEL-FSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMT 197 (214)
Q Consensus 119 ~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v-~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~i 197 (214)
....+++.|.+.|||-+=||.-. .|.+ +| .++.+++.+..+- . +|-+=.. - +.+++ .++
T Consensus 265 -------t~~eda~~a~~~GaD~lGfIf~~---~SpR--~V~~~~a~~i~~~l~v-~--~VgVfv~-~-~~~~i---~~i 324 (454)
T PRK09427 265 -------TRPQDAKAAYDAGAVYGGLIFVE---KSPR--YVSLEQAQEIIAAAPL-R--YVGVFRN-A-DIEDI---VDI 324 (454)
T ss_pred -------CCHHHHHHHHhCCCCEEeeEeCC---CCCC--CCCHHHHHHHHHhCCC-C--EEEEEeC-C-CHHHH---HHH
Confidence 35779999999999999998422 2222 23 3445555554431 1 2222222 1 34555 445
Q ss_pred HHHcCCCEEE
Q psy965 198 AMFAGSDFIK 207 (214)
Q Consensus 198 a~~aGaDFIK 207 (214)
+.+.|.|+|.
T Consensus 325 ~~~~~lD~vQ 334 (454)
T PRK09427 325 AKQLSLAAVQ 334 (454)
T ss_pred HHHcCCCEEE
Confidence 6677888775
No 307
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=43.09 E-value=2.4e+02 Score=27.40 Aligned_cols=88 Identities=15% Similarity=0.064 Sum_probs=60.9
Q ss_pred EEEecCCCCC-------CCCHHHHHHHHHHHHHCCCCEEEEecChhHh-hcCChhHHHHHHHHHHHHhcC-CceEEEEEe
Q psy965 111 LSQPAGFPSG-------QYLLETRLHEIELLAKQKVDEVDIVIQRSLV-LNNQWPELFSEVKQMKEKCGE-KIHMKTILA 181 (214)
Q Consensus 111 atV~igFP~G-------~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l-~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlE 181 (214)
|.- .||... ..+.+.-+.|++.+.+.|++++=+| -|.- ..-..+++.+=|+.|++.-++ +-...|=+|
T Consensus 98 C~Y-Cgfs~~n~~i~r~~Ls~EEI~~ea~~~~~~G~~~i~Lv--sGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~in 174 (469)
T PRK09613 98 CVY-CGFRRSNKEIKRKKLTQEEIREEVKALEDMGHKRLALV--AGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVN 174 (469)
T ss_pred Ccc-CCCccCCCCCCceECCHHHHHHHHHHHHHCCCCEEEEE--eCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEE
Confidence 555 566533 2457888899999999999999987 3322 344678888888888764321 124578889
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 182 VGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 182 t~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
.|.| |.++..+ ..++|+|.+
T Consensus 175 ig~l-t~eey~~----LkeaGv~~~ 194 (469)
T PRK09613 175 IAPT-TVENYKK----LKEAGIGTY 194 (469)
T ss_pred eecC-CHHHHHH----HHHcCCCEE
Confidence 9998 7677654 467888763
No 308
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=43.08 E-value=2e+02 Score=27.87 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=55.8
Q ss_pred HHHHHHHHC----CCCEEEEecChhHh-----hcCChhHHHHHHHHHHHHhcC-CceEEEEEeccCCCCHHHHHHHHHHH
Q psy965 129 HEIELLAKQ----KVDEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYCASMTA 198 (214)
Q Consensus 129 ~E~~~Ai~~----GAdEID~Vin~~~l-----~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt~~L~t~e~i~~A~~ia 198 (214)
..++.+++. |.+.|.+++..+.+ +....+++.+.+..+++.+.. +..+-+=.|.+.-.+.+.+.+.++.+
T Consensus 76 ~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~ 155 (494)
T TIGR00973 76 KDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAA 155 (494)
T ss_pred HhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHH
Confidence 445555554 67889999887543 345567778877777777653 23455556666666778889999999
Q ss_pred HHcCCCEEE
Q psy965 199 MFAGSDFIK 207 (214)
Q Consensus 199 ~~aGaDFIK 207 (214)
.++|+|-|-
T Consensus 156 ~~~Ga~~i~ 164 (494)
T TIGR00973 156 INAGATTIN 164 (494)
T ss_pred HHcCCCEEE
Confidence 999999763
No 309
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=43.07 E-value=1.3e+02 Score=28.35 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=49.8
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
...++.|++.|+|-|++.-.=|.-+.+... -.+-+.++++++++ .+.||+.-|.= +-..+.|| +..|||+|=
T Consensus 264 ~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~-t~~~L~ei~~~~~~--~~~vi~dGGIr-~G~Dv~KA----LaLGA~~v~ 335 (383)
T cd03332 264 PDDARRAVEAGVDGVVVSNHGGRQVDGSIA-ALDALPEIVEAVGD--RLTVLFDSGVR-TGADIMKA----LALGAKAVL 335 (383)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCcCCCCCcC-HHHHHHHHHHHhcC--CCeEEEeCCcC-cHHHHHHH----HHcCCCEEE
Confidence 467889999999999998444433333322 24457777777764 37788888855 66777654 345999875
Q ss_pred cC
Q psy965 208 TS 209 (214)
Q Consensus 208 TS 209 (214)
-+
T Consensus 336 iG 337 (383)
T cd03332 336 IG 337 (383)
T ss_pred Ec
Confidence 43
No 310
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=42.99 E-value=1.9e+02 Score=25.79 Aligned_cols=78 Identities=17% Similarity=0.072 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEE--e-------ccCCCCHHHH
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL--A-------VGELKTSENI 191 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIl--E-------t~~L~t~e~i 191 (214)
..+.+.-+.+++++.+.|++||-+|-. ..-..+++.+.+=++.|++..++ .+++..- | .|.+ +.
T Consensus 35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg--~~~~~~~~~~~~i~~~Ik~~~~~-i~~~~~s~~e~~~~~~~~g~~-~~--- 107 (309)
T TIGR00423 35 VLSLEEILEKVKEAVAKGATEVCIQGG--LNPQLDIEYYEELFRAIKQEFPD-VHIHAFSPMEVYFLAKNEGLS-IE--- 107 (309)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecC--CCCCCCHHHHHHHHHHHHHHCCC-ceEEecCHHHHHHHHHHcCCC-HH---
Confidence 367888888999999999999999832 12234567777777777776543 4444321 1 1212 22
Q ss_pred HHHHHHHHHcCCCEE
Q psy965 192 YCASMTAMFAGSDFI 206 (214)
Q Consensus 192 ~~A~~ia~~aGaDFI 206 (214)
...+...+||.|-+
T Consensus 108 -e~l~~LkeAGl~~i 121 (309)
T TIGR00423 108 -EVLKRLKKAGLDSM 121 (309)
T ss_pred -HHHHHHHHcCCCcC
Confidence 23445567898876
No 311
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=42.97 E-value=1.2e+02 Score=26.18 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=42.5
Q ss_pred HHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCC
Q psy965 131 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 131 ~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTST 210 (214)
++.+.+.||+||=+ .|+..-..+. ..-.+-|+++++.+ .+.+++--| +.+.+.+.++. +.|+|.|-.+|
T Consensus 36 a~~~~~~G~~~i~i-~dl~~~~~~~-~~~~~~i~~i~~~~----~ipv~~~GG-i~s~~~~~~~l----~~Ga~~Viigt 104 (253)
T PRK02083 36 AKRYNEEGADELVF-LDITASSEGR-DTMLDVVERVAEQV----FIPLTVGGG-IRSVEDARRLL----RAGADKVSINS 104 (253)
T ss_pred HHHHHHcCCCEEEE-EeCCcccccC-cchHHHHHHHHHhC----CCCEEeeCC-CCCHHHHHHHH----HcCCCEEEECh
Confidence 34445789999844 4776533233 33444555555543 256777666 54767665543 36888887776
Q ss_pred CC
Q psy965 211 SI 212 (214)
Q Consensus 211 Gf 212 (214)
+.
T Consensus 105 ~~ 106 (253)
T PRK02083 105 AA 106 (253)
T ss_pred hH
Confidence 53
No 312
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=42.90 E-value=1.2e+02 Score=28.42 Aligned_cols=73 Identities=18% Similarity=0.116 Sum_probs=50.6
Q ss_pred HHHHHHHHCCCCEEEEe-----cChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCC
Q psy965 129 HEIELLAKQKVDEVDIV-----IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGS 203 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~V-----in~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGa 203 (214)
..++.+++.|||-|=+- +-.+..+.|---.-..=+..+++++++ .-+.||..-|.= +.-.|.|| ..+||
T Consensus 162 e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~-~~v~VIaDGGIr-~~gDI~KA----LA~GA 235 (343)
T TIGR01305 162 EMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHG-LKGHIISDGGCT-CPGDVAKA----FGAGA 235 (343)
T ss_pred HHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhcc-CCCeEEEcCCcC-chhHHHHH----HHcCC
Confidence 46778899999988777 445555555443445556667777765 457899999965 66777665 45799
Q ss_pred CEEE
Q psy965 204 DFIK 207 (214)
Q Consensus 204 DFIK 207 (214)
|||=
T Consensus 236 d~VM 239 (343)
T TIGR01305 236 DFVM 239 (343)
T ss_pred CEEE
Confidence 9874
No 313
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=42.59 E-value=2.1e+02 Score=24.21 Aligned_cols=107 Identities=13% Similarity=0.017 Sum_probs=58.3
Q ss_pred cccHHHHHHhhhcCCCCCCeEEEecCCCCCC----------C--CHHHHHH----HHHHHHHCCCCEEEEecChhHhh-c
Q psy965 91 VSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQ----------Y--LLETRLH----EIELLAKQKVDEVDIVIQRSLVL-N 153 (214)
Q Consensus 91 P~~V~~a~~~L~~~gs~v~vatV~igFP~G~----------~--~~~~K~~----E~~~Ai~~GAdEID~Vin~~~l~-s 153 (214)
+......++.|+ ..++++++. ++|.|. . +.+.... -++.|-+.|+.-|=+. .|..- +
T Consensus 38 ~~~~~~l~~~l~--~~gl~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~--~g~~~~~ 111 (254)
T TIGR03234 38 DWDAEALKARLA--AAGLEQVLF--NLPAGDWAAGERGIACLPGREEEFREGVALAIAYARALGCPQVNCL--AGKRPAG 111 (254)
T ss_pred cCCHHHHHHHHH--HcCCeEEEE--eCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHHhCCCEEEEC--cCCCCCC
Confidence 445666677776 578888776 455442 1 1111122 2445777899876433 33211 1
Q ss_pred C----ChhHHHHHHHHHHHHhcCCceEEEEEecc--------CCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 154 N----QWPELFSEVKQMKEKCGEKIHMKTILAVG--------ELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 154 g----~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~--------~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
. .|+.+.+-++++.+.+.+ .-+++-+|+- .+.+.+ .+.++.-+.+.+.++
T Consensus 112 ~~~~~~~~~~~~~l~~l~~~A~~-~gi~l~lE~~~~~~~~~~~l~t~~---~~~~li~~v~~~~~~ 173 (254)
T TIGR03234 112 VSPEEARATLVENLRYAADALDR-IGLTLLIEPINSFDMPGFFLTTTE---QALAVIDDVGRENLK 173 (254)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh-cCCEEEEEECCcccCCCChhcCHH---HHHHHHHHhCCCCEe
Confidence 1 234444556777666654 4589999972 244544 445555555655554
No 314
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=42.52 E-value=2.9e+02 Score=25.77 Aligned_cols=95 Identities=12% Similarity=0.061 Sum_probs=63.1
Q ss_pred CCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCC
Q psy965 107 YQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK 186 (214)
Q Consensus 107 ~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~ 186 (214)
.+++-+. .++..+....+.-..+++.+++.|.+-+=+=+. ..+.+.-.+-|++++++.|+ -++++++...=-
T Consensus 145 ~v~~y~~-~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg-----~~~~~~di~~v~avRe~~G~--~~~l~vDaN~~w 216 (385)
T cd03326 145 RVPVYAA-GGYYYPGDDLGRLRDEMRRYLDRGYTVVKIKIG-----GAPLDEDLRRIEAALDVLGD--GARLAVDANGRF 216 (385)
T ss_pred eEEEEEe-cCCCCCCCCHHHHHHHHHHHHHCCCCEEEEeCC-----CCCHHHHHHHHHHHHHhcCC--CCeEEEECCCCC
Confidence 4554444 355444445666678999999999888766321 12344445667788887775 478899886533
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcC
Q psy965 187 TSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 187 t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
|.++-.+.++...+.|..|+--.
T Consensus 217 ~~~~A~~~~~~l~~~~~~~iEeP 239 (385)
T cd03326 217 DLETAIAYAKALAPYGLRWYEEP 239 (385)
T ss_pred CHHHHHHHHHHhhCcCCCEEECC
Confidence 76777777777778899888643
No 315
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=42.44 E-value=1.5e+02 Score=29.05 Aligned_cols=78 Identities=13% Similarity=0.010 Sum_probs=55.3
Q ss_pred HHHHHHHHC----CCCEEEEecChhHhh-----cCChhHHHHHHHHHHHHhcC-Cc-eEEEEEeccCCCCHHHHHHHHHH
Q psy965 129 HEIELLAKQ----KVDEVDIVIQRSLVL-----NNQWPELFSEVKQMKEKCGE-KI-HMKTILAVGELKTSENIYCASMT 197 (214)
Q Consensus 129 ~E~~~Ai~~----GAdEID~Vin~~~l~-----sg~~~~v~~Ei~~v~~a~~~-~~-~lKvIlEt~~L~t~e~i~~A~~i 197 (214)
..++.|++. |++.|-+++..+.+. ....+++.+.+...++.+.. +. .+-+-.|.+.-.+.+-+.+..+.
T Consensus 168 ~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~ 247 (503)
T PLN03228 168 RDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGE 247 (503)
T ss_pred hhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHH
Confidence 366777766 778999997776433 45678888888888877654 12 24445566655566777888999
Q ss_pred HHHcCCCEE
Q psy965 198 AMFAGSDFI 206 (214)
Q Consensus 198 a~~aGaDFI 206 (214)
+.++|+|-|
T Consensus 248 a~~~Gad~I 256 (503)
T PLN03228 248 AIKAGATSV 256 (503)
T ss_pred HHhcCCCEE
Confidence 999999976
No 316
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=42.34 E-value=75 Score=28.37 Aligned_cols=65 Identities=23% Similarity=0.202 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCC-ceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEK-IHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~-~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
..|+.+|.+.|||-|=+= |. -. ++++.+.+.+... ..++ |.-.|=+ +.+++... ..+|+|+|
T Consensus 193 ~eea~~A~~~gaD~I~ld-~~---~p-------~~l~~~~~~~~~~~~~i~-i~AsGGI-~~~ni~~~----~~~Gvd~I 255 (272)
T cd01573 193 LEEALAAAEAGADILQLD-KF---SP-------EELAELVPKLRSLAPPVL-LAAAGGI-NIENAAAY----AAAGADIL 255 (272)
T ss_pred HHHHHHHHHcCCCEEEEC-CC---CH-------HHHHHHHHHHhccCCCce-EEEECCC-CHHHHHHH----HHcCCcEE
Confidence 378999999999843211 21 11 2444444444321 1233 5556667 77777533 56899999
Q ss_pred EcC
Q psy965 207 KTS 209 (214)
Q Consensus 207 KTS 209 (214)
-+|
T Consensus 256 ~vs 258 (272)
T cd01573 256 VTS 258 (272)
T ss_pred EEC
Confidence 443
No 317
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=41.86 E-value=1.1e+02 Score=27.28 Aligned_cols=165 Identities=15% Similarity=0.091 Sum_probs=89.4
Q ss_pred ccCHHHHHHHHHHhhhhhhhhhHh---HHHHHHHhhhhhc---ccCCCC---CCCHHHHHHHHHHhhccCchhhhccc-c
Q psy965 18 QINTKYLEDLTRQFEAVDLSRIKN---KKSLLLKIIEFID---LTTLSG---DDTEAVVETLTLKAIQPLSEELKEKV-L 87 (214)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ID---~TlL~~---~~T~~~I~~lc~eA~~~f~~~~~~~~-~ 87 (214)
.+-..+++..-.++-||.|||+.. +..-+ ..+|+ +++|-. --|.+|-.+..+-|++-+..+.. +. +
T Consensus 23 ~~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~---~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~i-KlEV 98 (248)
T cd04728 23 AIMKEAIEASGAEIVTVALRRVNIGDPGGESF---LDLLDKSGYTLLPNTAGCRTAEEAVRTARLAREALGTDWI-KLEV 98 (248)
T ss_pred HHHHHHHHHhCCCEEEEEEEecccCCCCcchH---HhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeE-EEEE
Confidence 334455666666777888898632 22333 34444 555543 44677777777777753331110 01 0
Q ss_pred -----ccCcc---cHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhH-
Q psy965 88 -----RGFVS---TVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPE- 158 (214)
Q Consensus 88 -----cv~P~---~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~- 158 (214)
.-.|. -++.+++..+ .+..+..+. .. -..+++...+.|++-+ +..+.....+..-
T Consensus 99 i~d~~~Llpd~~~tv~aa~~L~~---~Gf~vlpyc------~d----d~~~ar~l~~~G~~~v---mPlg~pIGsg~Gi~ 162 (248)
T cd04728 99 IGDDKTLLPDPIETLKAAEILVK---EGFTVLPYC------TD----DPVLAKRLEDAGCAAV---MPLGSPIGSGQGLL 162 (248)
T ss_pred ecCccccccCHHHHHHHHHHHHH---CCCEEEEEe------CC----CHHHHHHHHHcCCCEe---CCCCcCCCCCCCCC
Confidence 11332 2333433333 344444331 11 1346777778899876 4443333222111
Q ss_pred HHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 159 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 159 v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
-.+-|+.+++.. .+.||.|-| +.+.++.. .||+.|+|-|=-.|+
T Consensus 163 ~~~~I~~I~e~~----~vpVI~egG-I~tpeda~----~AmelGAdgVlV~SA 206 (248)
T cd04728 163 NPYNLRIIIERA----DVPVIVDAG-IGTPSDAA----QAMELGADAVLLNTA 206 (248)
T ss_pred CHHHHHHHHHhC----CCcEEEeCC-CCCHHHHH----HHHHcCCCEEEEChH
Confidence 134445666542 378999988 55888775 567799999877765
No 318
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=41.83 E-value=1e+02 Score=27.45 Aligned_cols=136 Identities=15% Similarity=0.006 Sum_probs=71.5
Q ss_pred CCCCCHHHHHHHHHHhhccCchhhhcccc--ccCcc-cHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHH-HHHH
Q psy965 59 SGDDTEAVVETLTLKAIQPLSEELKEKVL--RGFVS-TVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHE-IELL 134 (214)
Q Consensus 59 ~~~~T~~~I~~lc~eA~~~f~~~~~~~~~--cv~P~-~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E-~~~A 134 (214)
.+......++.+++-|-++.... .-+.+ .++|. .++.-.+..+ ..+|.+++- |+.+=.....-++.+ .++|
T Consensus 19 Dkglg~~~~~dlLe~ag~yID~~-K~g~Gt~~l~~~~~l~eki~l~~--~~gV~v~~G--Gtl~E~a~~q~~~~~yl~~~ 93 (244)
T PF02679_consen 19 DKGLGLRYLEDLLESAGDYIDFL-KFGWGTSALYPEEILKEKIDLAH--SHGVYVYPG--GTLFEVAYQQGKFDEYLEEC 93 (244)
T ss_dssp ESS--HHHHHHHHHHHGGG-SEE-EE-TTGGGGSTCHHHHHHHHHHH--CTT-EEEE---HHHHHHHHHTT-HHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhhhccEE-EecCceeeecCHHHHHHHHHHHH--HcCCeEeCC--cHHHHHHHhcChHHHHHHHH
Confidence 34567778888888877642200 00011 23443 5666666666 456765554 322211112223333 4566
Q ss_pred HHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCC-------CHHHHHHHHHHHHHcCCCEEE
Q psy965 135 AKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK-------TSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 135 i~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~-------t~e~i~~A~~ia~~aGaDFIK 207 (214)
-+.|-+-|++- +|-.+-=.++-..+.+.+.. .-+||+-|.|.=. +.++..+-.+-..+||||+|=
T Consensus 94 k~lGf~~IEiS-------dGti~l~~~~r~~~I~~~~~-~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~Vi 165 (244)
T PF02679_consen 94 KELGFDAIEIS-------DGTIDLPEEERLRLIRKAKE-EGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVI 165 (244)
T ss_dssp HHCT-SEEEE---------SSS---HHHHHHHHHHHCC-TTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEE
T ss_pred HHcCCCEEEec-------CCceeCCHHHHHHHHHHHHH-CCCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEE
Confidence 67899988875 33344445555555555554 4589999998532 235566777888999999984
No 319
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.69 E-value=2.3e+02 Score=24.36 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=59.0
Q ss_pred ccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHH
Q psy965 88 RGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMK 167 (214)
Q Consensus 88 cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~ 167 (214)
.+.|.+.+...+..++ .+++ -+| |..+. .|+..|.+.|||-|=+ .+ .+.+. -+.++.++
T Consensus 92 ivsP~~~~~v~~~~~~--~~i~------~iP-G~~T~----~E~~~A~~~Gad~vkl-FP-----a~~~G--~~~ik~l~ 150 (213)
T PRK06552 92 IVSPSFNRETAKICNL--YQIP------YLP-GCMTV----TEIVTALEAGSEIVKL-FP-----GSTLG--PSFIKAIK 150 (213)
T ss_pred EECCCCCHHHHHHHHH--cCCC------EEC-CcCCH----HHHHHHHHcCCCEEEE-CC-----cccCC--HHHHHHHh
Confidence 4578888877776552 3433 223 55554 4888899999999886 22 11221 33466666
Q ss_pred HHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 168 EKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 168 ~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
...++ ++ ++-+|=. +.+++. --..+|++.+-.++.
T Consensus 151 ~~~p~---ip-~~atGGI-~~~N~~----~~l~aGa~~vavgs~ 185 (213)
T PRK06552 151 GPLPQ---VN-VMVTGGV-NLDNVK----DWFAAGADAVGIGGE 185 (213)
T ss_pred hhCCC---CE-EEEECCC-CHHHHH----HHHHCCCcEEEEchH
Confidence 54443 55 4588888 777774 345788888877654
No 320
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=41.56 E-value=1.5e+02 Score=28.59 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCCCEEEEecChh-----HhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 128 LHEIELLAKQKVDEVDIVIQRS-----LVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~-----~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
..+++.+++.|||-|++-+-.+ ....|---.-..=+..+.++++. ..+-+|-+-|.- +..++.|| +.+|
T Consensus 280 ~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~-~~~~viadGGi~-~~~di~kA----la~G 353 (486)
T PRK05567 280 AEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKK-YGIPVIADGGIR-YSGDIAKA----LAAG 353 (486)
T ss_pred HHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhcc-CCCeEEEcCCCC-CHHHHHHH----HHhC
Confidence 4578889999999999632211 11111101112233444555543 236688888866 87888765 4569
Q ss_pred CCEEEcCCC
Q psy965 203 SDFIKTSGS 211 (214)
Q Consensus 203 aDFIKTSTG 211 (214)
||+|=-.+-
T Consensus 354 A~~v~~G~~ 362 (486)
T PRK05567 354 ASAVMLGSM 362 (486)
T ss_pred CCEEEECcc
Confidence 998865543
No 321
>KOG2367|consensus
Probab=41.54 E-value=1.4e+02 Score=29.41 Aligned_cols=84 Identities=14% Similarity=0.058 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecChhH-hhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVIQRSL-VLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTA 198 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~-l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia 198 (214)
|.+..+-=+.-.++..+.|+.- +|+.. +--.....+++-|.-++.-.++ ..||.+++-.=++.-.-..++++.
T Consensus 199 ~rse~~fl~eI~~aV~Kag~~t----vnipdTVgia~P~~y~dLI~y~~tn~~~--~e~v~Is~HcHND~G~a~Ant~~g 272 (560)
T KOG2367|consen 199 GRSELEFLLEILGAVIKAGVTT----VNIPDTVGIATPNEYGDLIEYLKTNTPG--REKVCISTHCHNDLGCATANTELG 272 (560)
T ss_pred ccCcHHHHHHHHHHHHHhCCcc----ccCcceecccChHHHHHHHHHHHccCCC--ceeEEEEEeecCCccHHHHHHHHH
Confidence 3444444444444444455544 33332 2334556777777777754443 689999998775555556778999
Q ss_pred HHcCCCEEEcC
Q psy965 199 MFAGSDFIKTS 209 (214)
Q Consensus 199 ~~aGaDFIKTS 209 (214)
+.||||=|-++
T Consensus 273 ~~AGA~~VE~~ 283 (560)
T KOG2367|consen 273 LLAGARQVEVT 283 (560)
T ss_pred hhcCcceEEEE
Confidence 99999998764
No 322
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=41.45 E-value=2.2e+02 Score=25.83 Aligned_cols=78 Identities=18% Similarity=0.079 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEE--Ee-------ccCCCCHHHHH
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTI--LA-------VGELKTSENIY 192 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvI--lE-------t~~L~t~e~i~ 192 (214)
.+.+.-+.+++++.+.|+++|-+|=.. .-.-+.+++.+=++.|++..++ .+++.. .| .|.+ +.|.+.
T Consensus 70 ls~eeI~e~~~~~~~~G~~~i~l~gG~--~p~~~~~~~~~i~~~Ik~~~~~-i~~~~~t~~ei~~~~~~~g~~-~~e~l~ 145 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAGATEVCIQGGI--HPDLDGDFYLDILRAVKEEVPG-MHIHAFSPMEVYYGARNSGLS-VEEALK 145 (343)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeCC--CCCCCHHHHHHHHHHHHHHCCC-ceEEecCHHHHHHHHHHcCCC-HHHHHH
Confidence 478888999999999999999999221 1122556666666666654333 333321 12 3444 544443
Q ss_pred HHHHHHHHcCCCEEE
Q psy965 193 CASMTAMFAGSDFIK 207 (214)
Q Consensus 193 ~A~~ia~~aGaDFIK 207 (214)
...+||.|-+-
T Consensus 146 ----~LkeAGl~~i~ 156 (343)
T TIGR03551 146 ----RLKEAGLDSMP 156 (343)
T ss_pred ----HHHHhCccccc
Confidence 34457887664
No 323
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=41.37 E-value=1.1e+02 Score=27.03 Aligned_cols=138 Identities=12% Similarity=-0.018 Sum_probs=72.7
Q ss_pred CCCCCCHHHHHHHHHHhhccCchhhhcccc--ccCc-ccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHH-HHHH
Q psy965 58 LSGDDTEAVVETLTLKAIQPLSEELKEKVL--RGFV-STVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLH-EIEL 133 (214)
Q Consensus 58 L~~~~T~~~I~~lc~eA~~~f~~~~~~~~~--cv~P-~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~-E~~~ 133 (214)
+.|..++..++.+++-+-.++... .-+.+ .++| ..++.-.++.+ ..+|++++- |-.+=......++. -.++
T Consensus 5 ~dkgl~~~~~~d~Le~~g~yID~l-Kfg~Gt~~l~~~~~l~eki~la~--~~~V~v~~G--Gtl~E~~~~q~~~~~Yl~~ 79 (237)
T TIGR03849 5 LDKGLPPKFVEDYLKVCGDYITFV-KFGWGTSALIDRDIVKEKIEMYK--DYGIKVYPG--GTLFEIAHSKGKFDEYLNE 79 (237)
T ss_pred ecCCCCHHHHHHHHHHhhhheeeE-EecCceEeeccHHHHHHHHHHHH--HcCCeEeCC--ccHHHHHHHhhhHHHHHHH
Confidence 445567788888888776542200 00012 3355 56666665555 345654332 10000011111222 2347
Q ss_pred HHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCC-------CHHHHHHHHHHHHHcCCCEE
Q psy965 134 LAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK-------TSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 134 Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~-------t~e~i~~A~~ia~~aGaDFI 206 (214)
|-+.|-+-|++-- |-.+-=.++...+++.+.. .-+||+-|.|.=. +.++..+-.+-+.+||||+|
T Consensus 80 ~k~lGf~~IEiS~-------G~~~i~~~~~~rlI~~~~~-~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~V 151 (237)
T TIGR03849 80 CDELGFEAVEISD-------GSMEISLEERCNLIERAKD-NGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYV 151 (237)
T ss_pred HHHcCCCEEEEcC-------CccCCCHHHHHHHHHHHHh-CCCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEE
Confidence 7778999888642 2233334444444444443 4588888877421 33555566677799999998
Q ss_pred Ec
Q psy965 207 KT 208 (214)
Q Consensus 207 KT 208 (214)
=.
T Consensus 152 ii 153 (237)
T TIGR03849 152 II 153 (237)
T ss_pred EE
Confidence 43
No 324
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=40.95 E-value=3e+02 Score=25.60 Aligned_cols=127 Identities=16% Similarity=0.112 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCC-CCCCHHHHHHHHHHHHHCCCCEE
Q psy965 64 EAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPS-GQYLLETRLHEIELLAKQKVDEV 142 (214)
Q Consensus 64 ~~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~-G~~~~~~K~~E~~~Ai~~GAdEI 142 (214)
..-+++++.|.. +. ....+||-||.... +...+|.+. |- =..+.+.=+.|++++++.|..-+
T Consensus 14 ~~~~R~lv~Et~--l~-----~~dlI~PiFV~eg~------~~~~~I~sm----Pg~~r~s~d~l~~~v~~~~~~Gi~av 76 (323)
T PRK09283 14 TAALRRLVRETR--LT-----PNDLIYPLFVVEGE------NEREEIPSM----PGVYRLSIDLLVKEAEEAVELGIPAV 76 (323)
T ss_pred CHHHHHHHhcCC--CC-----HHHceeeEEEecCC------CCccccCCC----CCceeeCHHHHHHHHHHHHHCCCCEE
Confidence 344566666654 11 23478999997532 233444444 42 23456777889999999999998
Q ss_pred EEecChhHhhcCC-------hhHHHHHHHHHHHHhcC--------------CceEEEEEeccCCCCHHHHHHHHHHHH--
Q psy965 143 DIVIQRSLVLNNQ-------WPELFSEVKQMKEKCGE--------------KIHMKTILAVGELKTSENIYCASMTAM-- 199 (214)
Q Consensus 143 D~Vin~~~l~sg~-------~~~v~~Ei~~v~~a~~~--------------~~~lKvIlEt~~L~t~e~i~~A~~ia~-- 199 (214)
.+-.- ...|+.. -..+.+=|+.+++..++ +.|.-++ ..|...+++-+...++.|.
T Consensus 77 ~LFgv-~~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~YT~hGHcGil-~~g~idND~Tl~~L~~~Al~~ 154 (323)
T PRK09283 77 ALFGV-PELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYTSHGHCGIL-EDGYVDNDETLELLAKQALSQ 154 (323)
T ss_pred EEeCc-CCCCCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccCCCCCCceecc-cCCcCcCHHHHHHHHHHHHHH
Confidence 77644 3334332 24566778888877432 0233333 3477778777777666654
Q ss_pred -HcCCCEEEcC
Q psy965 200 -FAGSDFIKTS 209 (214)
Q Consensus 200 -~aGaDFIKTS 209 (214)
+||||+|--|
T Consensus 155 A~AGaDiVAPS 165 (323)
T PRK09283 155 AEAGADIVAPS 165 (323)
T ss_pred HHhCCCEEEcc
Confidence 7999999765
No 325
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=40.90 E-value=1.2e+02 Score=28.45 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=65.2
Q ss_pred ccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHH
Q psy965 88 RGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMK 167 (214)
Q Consensus 88 cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~ 167 (214)
++.|.+-..+.+.|++ ..++|...+ +||.|...|+.=+.++.+.. |.++ +...+.......+++.+...+
T Consensus 219 v~~~~~g~~~a~~Lee-~~GiP~~~~--~~P~G~~~T~~~l~~ia~~~--g~~~-----~~e~~i~~e~~~~~~~l~~~~ 288 (426)
T cd01972 219 TLCLDLGYYLGAALEQ-RFGVPEIKA--PQPYGIEATDKWLREIAKVL--GMEA-----EAEAVIEREHERVAPEIEELR 288 (426)
T ss_pred EEChhHHHHHHHHHHH-HhCCCeEec--CCccCHHHHHHHHHHHHHHh--CCcH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 3355554556667764 467775555 79999999998888887765 4321 244455555666677777666
Q ss_pred HHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC-CCEEEcCC
Q psy965 168 EKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG-SDFIKTSG 210 (214)
Q Consensus 168 ~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG-aDFIKTST 210 (214)
+...+ + |+++-++.- ...-.+....+.| ..-+..+|
T Consensus 289 ~~l~G-k--~~~i~~~~~----~~~~~~~~l~elG~~~v~~~~~ 325 (426)
T cd01972 289 KALKG-K--KAIVETGAA----YGHLLIAVLRELGFGEVPVVLV 325 (426)
T ss_pred HHhCC-C--EEEEEeCCc----cHHHHHHHHHHcCCceEEEEEe
Confidence 65554 3 555555432 2334455567888 76666555
No 326
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=40.66 E-value=2e+02 Score=26.54 Aligned_cols=69 Identities=20% Similarity=0.156 Sum_probs=45.2
Q ss_pred HHHHHHHHHCC--CCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCE
Q psy965 128 LHEIELLAKQK--VDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF 205 (214)
Q Consensus 128 ~~E~~~Ai~~G--AdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDF 205 (214)
...+...++.| +|- +|++. -.|+-+.+.+-|+.+++..+. +..+-=+++ |. ..++.++++|+|.
T Consensus 96 ~~r~~~lv~a~~~~d~--i~~D~---ahg~s~~~~~~i~~i~~~~p~--~~vi~GnV~---t~----e~a~~l~~aGad~ 161 (321)
T TIGR01306 96 YEFVTQLAEEALTPEY--ITIDI---AHGHSNSVINMIKHIKTHLPD--SFVIAGNVG---TP----EAVRELENAGADA 161 (321)
T ss_pred HHHHHHHHhcCCCCCE--EEEeC---ccCchHHHHHHHHHHHHhCCC--CEEEEecCC---CH----HHHHHHHHcCcCE
Confidence 34555667777 343 55676 468889999999999987653 222211132 43 3456778999999
Q ss_pred EEcCC
Q psy965 206 IKTSG 210 (214)
Q Consensus 206 IKTST 210 (214)
|+-|-
T Consensus 162 I~V~~ 166 (321)
T TIGR01306 162 TKVGI 166 (321)
T ss_pred EEECC
Confidence 99884
No 327
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=40.56 E-value=2.4e+02 Score=24.70 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=59.2
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEE---e
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL---A 181 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIl---E 181 (214)
+..++|.+-+ |..+++.-+..++.|.+.|||-+-+..++ +....-+.+.+-.+++.++.+- ++=+-- -
T Consensus 68 ~~~~~vi~gv-----~~~st~~~i~~a~~a~~~Gad~v~v~~P~--~~~~s~~~l~~y~~~ia~~~~~--pi~iYn~P~~ 138 (289)
T PF00701_consen 68 AGRVPVIAGV-----GANSTEEAIELARHAQDAGADAVLVIPPY--YFKPSQEELIDYFRAIADATDL--PIIIYNNPAR 138 (289)
T ss_dssp TTSSEEEEEE-----ESSSHHHHHHHHHHHHHTT-SEEEEEEST--SSSCCHHHHHHHHHHHHHHSSS--EEEEEEBHHH
T ss_pred cCceEEEecC-----cchhHHHHHHHHHHHhhcCceEEEEeccc--cccchhhHHHHHHHHHHhhcCC--CEEEEECCCc
Confidence 3456555542 55678888999999999999998777653 3345677888888888876542 222221 1
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 182 VGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 182 t~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
||.--+.+.+.+ ++..-..-.||-|+|
T Consensus 139 tg~~ls~~~l~~---L~~~~nv~giK~s~~ 165 (289)
T PF00701_consen 139 TGNDLSPETLAR---LAKIPNVVGIKDSSG 165 (289)
T ss_dssp HSSTSHHHHHHH---HHTSTTEEEEEESSS
T ss_pred cccCCCHHHHHH---HhcCCcEEEEEcCch
Confidence 233225555544 444456677776665
No 328
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=40.54 E-value=2.5e+02 Score=24.52 Aligned_cols=90 Identities=17% Similarity=0.221 Sum_probs=56.4
Q ss_pred CCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhc-CChhHHHHHHHHHHHHhcCCceEEEEE-----
Q psy965 107 YQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLN-NQWPELFSEVKQMKEKCGEKIHMKTIL----- 180 (214)
Q Consensus 107 ~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~s-g~~~~v~~Ei~~v~~a~~~~~~lKvIl----- 180 (214)
..+||+. +. | .+.+.-.++++.+.+.|||=|++=+|+ +.+ .+.+.+.+.+.++++.+++ +.+|+
T Consensus 15 ~~~i~v~-l~---~-~~~~e~~~~~~~~~~~~aD~vElRlD~--l~~~~~~~~~~~~~~~l~~~~~~---~PiI~T~R~~ 84 (253)
T PRK02412 15 APKIIVP-IM---G-KTLEEVLAEALAISKYDADIIEWRADF--LEKISDVESVLAAAPAIREKFAG---KPLLFTFRTA 84 (253)
T ss_pred CcEEEEE-eC---C-CCHHHHHHHHHHHhhcCCCEEEEEech--hhccCCHHHHHHHHHHHHHhcCC---CcEEEEECCh
Confidence 3455655 32 3 345555578888898999988888886 222 2446666777777775543 45555
Q ss_pred -eccCCC-CHHHHHHHHHHHHHcC-CCEE
Q psy965 181 -AVGELK-TSENIYCASMTAMFAG-SDFI 206 (214)
Q Consensus 181 -Et~~L~-t~e~i~~A~~ia~~aG-aDFI 206 (214)
|-|... ++++-.+.-+.+++.| +|||
T Consensus 85 ~eGG~~~~~~~~~~~ll~~~~~~~~~d~v 113 (253)
T PRK02412 85 KEGGEIALSDEEYLALIKAVIKSGLPDYI 113 (253)
T ss_pred hhCCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 344332 4444555667778888 8987
No 329
>PRK09875 putative hydrolase; Provisional
Probab=40.36 E-value=67 Score=29.02 Aligned_cols=54 Identities=9% Similarity=0.180 Sum_probs=38.7
Q ss_pred CChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCCC
Q psy965 154 NQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSIQ 213 (214)
Q Consensus 154 g~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf~ 213 (214)
.+.+.+.+|++.++++ | .+.|+|..-..--.++....+++.+.|...|- ||||-
T Consensus 31 ~~~~~~~~el~~~~~~-G----g~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~-~TG~y 84 (292)
T PRK09875 31 DQYAFICQEMNDLMTR-G----VRNVIEMTNRYMGRNAQFMLDVMRETGINVVA-CTGYY 84 (292)
T ss_pred ccHHHHHHHHHHHHHh-C----CCeEEecCCCccCcCHHHHHHHHHHhCCcEEE-cCcCC
Confidence 5678888899998864 4 36778865454345566777888888988775 88873
No 330
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=40.34 E-value=82 Score=27.15 Aligned_cols=120 Identities=15% Similarity=0.057 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHhhccCchhhhcccccc---CcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHC
Q psy965 61 DDTEAVVETLTLKAIQPLSEELKEKVLRG---FVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQ 137 (214)
Q Consensus 61 ~~T~~~I~~lc~eA~~~f~~~~~~~~~cv---~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~ 137 (214)
..|.++++++++--..-.. ..|- .|.-+....+.++..+ ..+-+-+ .-+.|++.|.+.
T Consensus 51 TPT~~ev~~l~~aGadIIA------lDaT~R~Rp~~l~~li~~i~~~~--~l~MADi-----------st~ee~~~A~~~ 111 (192)
T PF04131_consen 51 TPTLKEVDALAEAGADIIA------LDATDRPRPETLEELIREIKEKY--QLVMADI-----------STLEEAINAAEL 111 (192)
T ss_dssp S-SHHHHHHHHHCT-SEEE------EE-SSSS-SS-HHHHHHHHHHCT--SEEEEE------------SSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCCEEE------EecCCCCCCcCHHHHHHHHHHhC--cEEeeec-----------CCHHHHHHHHHc
Confidence 4588999999875442111 1222 4555555555665423 3333331 135799999999
Q ss_pred CCCEEEEecChhHhhcCC-hhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCC
Q psy965 138 KVDEVDIVIQRSLVLNNQ-WPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 138 GAdEID~Vin~~~l~sg~-~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTST 210 (214)
|+|-|=-- -.|+-.... ...=++-++++++. .+.||-|-..- ++|+.. -|+++||+.|--+|
T Consensus 112 G~D~I~TT-LsGYT~~t~~~~pD~~lv~~l~~~-----~~pvIaEGri~-tpe~a~----~al~~GA~aVVVGs 174 (192)
T PF04131_consen 112 GFDIIGTT-LSGYTPYTKGDGPDFELVRELVQA-----DVPVIAEGRIH-TPEQAA----KALELGAHAVVVGS 174 (192)
T ss_dssp T-SEEE-T-TTTSSTTSTTSSHHHHHHHHHHHT-----TSEEEEESS---SHHHHH----HHHHTT-SEEEE-H
T ss_pred CCCEEEcc-cccCCCCCCCCCCCHHHHHHHHhC-----CCcEeecCCCC-CHHHHH----HHHhcCCeEEEECc
Confidence 98765433 122211111 22223344444442 35699998866 888765 46789999886443
No 331
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=40.31 E-value=2.9e+02 Score=25.12 Aligned_cols=90 Identities=18% Similarity=0.293 Sum_probs=54.1
Q ss_pred CCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhH--------hhc-----------CCh-hHHHHHHHH
Q psy965 106 VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSL--------VLN-----------NQW-PELFSEVKQ 165 (214)
Q Consensus 106 s~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~--------l~s-----------g~~-~~v~~Ei~~ 165 (214)
.++||..=.+|| |.+ ..+++.+.+.|+|-||+- +.|- .+. -+| -...+.|..
T Consensus 177 ~~vPVivK~~g~--g~s-----~~~a~~l~~~Gvd~I~vs-G~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~ 248 (326)
T cd02811 177 LSVPVIVKEVGF--GIS-----RETAKRLADAGVKAIDVA-GAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLE 248 (326)
T ss_pred cCCCEEEEecCC--CCC-----HHHHHHHHHcCCCEEEEC-CCCCCcccccccccccccccccccccccccccHHHHHHH
Confidence 467777643465 533 578888999999999973 2211 010 011 112345666
Q ss_pred HHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 166 MKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 166 v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
+++.++ .+.+|.--| +.+.+.+.++- ..|||+|--++.
T Consensus 249 ~~~~~~---~ipIiasGG-Ir~~~dv~kal----~lGAd~V~i~~~ 286 (326)
T cd02811 249 VRSALP---DLPLIASGG-IRNGLDIAKAL----ALGADLVGMAGP 286 (326)
T ss_pred HHHHcC---CCcEEEECC-CCCHHHHHHHH----HhCCCEEEEcHH
Confidence 665543 356666666 55877776654 359999987663
No 332
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=39.93 E-value=2.4e+02 Score=25.99 Aligned_cols=73 Identities=21% Similarity=0.146 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhH-hhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHH
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSL-VLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMF 200 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~-l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~ 200 (214)
.+.+.-..+++.+.+.|+.+|=+|= |. ...-+.+++.+=++.+++..+. .. +|.+.| |.++. ....+
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvg--Ge~p~~~~~e~l~eii~~Ik~~~p~-i~----Iei~~l-t~e~~----~~Lk~ 170 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVT--GESEKAAGVEYIAEAIKLAREYFSS-LA----IEVQPL-NEEEY----KKLVE 170 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEee--CCCCCCCCHHHHHHHHHHHHHhCCc-cc----cccccC-CHHHH----HHHHH
Confidence 4678888899999999999998882 32 2334567788888888775443 33 466667 66666 45567
Q ss_pred cCCCEE
Q psy965 201 AGSDFI 206 (214)
Q Consensus 201 aGaDFI 206 (214)
+|+|-+
T Consensus 171 aGv~r~ 176 (366)
T TIGR02351 171 AGLDGV 176 (366)
T ss_pred cCCCEE
Confidence 888865
No 333
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=39.81 E-value=77 Score=28.17 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=41.7
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
.++.+|...|||-| .+.... ++ .+++..+.+.|.. .-|-+++|+- |.+++.+ +.++|++.|
T Consensus 115 ~QI~ea~~~GADav--LLI~~~-L~------~~~l~~l~~~a~~-lGle~LVEVh---~~~El~~----a~~~ga~ii 175 (247)
T PRK13957 115 IQIREARAFGASAI--LLIVRI-LT------PSQIKSFLKHASS-LGMDVLVEVH---TEDEAKL----ALDCGAEII 175 (247)
T ss_pred HHHHHHHHcCCCEE--EeEHhh-CC------HHHHHHHHHHHHH-cCCceEEEEC---CHHHHHH----HHhCCCCEE
Confidence 57788888999987 333332 22 2356666666665 5699999998 5577754 556788876
No 334
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=39.01 E-value=47 Score=29.42 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=47.0
Q ss_pred HHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 132 ELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 132 ~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
......|++-|-|- +.+-+ .-.+|++++.++|.. .-+- +=-||=+ +.+++....++|.+||+.+|
T Consensus 142 aml~dmG~~SiKff-PM~Gl------~~leE~~avA~aca~-~g~~-lEPTGGI-dl~Nf~~I~~i~ldaGv~kv 206 (236)
T TIGR03581 142 AMLKDMGGSSVKFF-PMGGL------KHLEEYAAVAKACAK-HGFY-LEPTGGI-DLDNFEEIVQIALDAGVEKV 206 (236)
T ss_pred HHHHHcCCCeeeEe-ecCCc------ccHHHHHHHHHHHHH-cCCc-cCCCCCc-cHHhHHHHHHHHHHcCCCee
Confidence 44455799998876 34333 347899999999954 1222 2337777 78999999999999999876
No 335
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=38.98 E-value=1.8e+02 Score=27.41 Aligned_cols=73 Identities=8% Similarity=0.087 Sum_probs=47.3
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChh-HHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWP-ELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~-~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
...++.|++.|+|-||+. |.|-= .-++- .-.+=+.++++++++ .+.||+.-|-= +-..+.||- ..|||+|
T Consensus 235 ~~dA~~a~~~Gvd~I~Vs-nhGGr-qld~~~~t~~~L~ei~~av~~--~~~vi~dGGIr-~G~Dv~KAL----ALGA~aV 305 (367)
T PLN02493 235 GEDARIAIQAGAAGIIVS-NHGAR-QLDYVPATISALEEVVKATQG--RIPVFLDGGVR-RGTDVFKAL----ALGASGI 305 (367)
T ss_pred HHHHHHHHHcCCCEEEEC-CCCCC-CCCCchhHHHHHHHHHHHhCC--CCeEEEeCCcC-cHHHHHHHH----HcCCCEE
Confidence 567889999999999877 55431 11222 234455556666654 37788888844 667776654 3499987
Q ss_pred EcC
Q psy965 207 KTS 209 (214)
Q Consensus 207 KTS 209 (214)
=-+
T Consensus 306 ~iG 308 (367)
T PLN02493 306 FIG 308 (367)
T ss_pred EEc
Confidence 543
No 336
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=38.92 E-value=81 Score=26.93 Aligned_cols=101 Identities=16% Similarity=0.040 Sum_probs=58.7
Q ss_pred CCCCCeEEEecCCCCCCC-----CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEE
Q psy965 105 LVYQPCLSQPAGFPSGQY-----LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTI 179 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~-----~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvI 179 (214)
+.++++.- -++|.|.. ..+.-..-++.|.+.|||=|=.- .+.. .|.-..-.+.++++.+.++-+-.++|.
T Consensus 123 ~~gl~vIl--E~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~--tg~~-~~~t~~~~~~~~~~~~~~~~p~~~~Vk 197 (236)
T PF01791_consen 123 KYGLKVIL--EPYLRGEEVADEKKPDLIARAARIAAELGADFVKTS--TGKP-VGATPEDVELMRKAVEAAPVPGKVGVK 197 (236)
T ss_dssp TSEEEEEE--EECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE---SSS-SCSHHHHHHHHHHHHHTHSSTTTSEEE
T ss_pred cCCcEEEE--EEecCchhhcccccHHHHHHHHHHHHHhCCCEEEec--CCcc-ccccHHHHHHHHHHHHhcCCCcceEEE
Confidence 34555433 37776665 23345777888999999976554 3422 333333334455555544311236788
Q ss_pred EeccCCCCHHHHHHHHHHH---HHcCCCEEEcCCCC
Q psy965 180 LAVGELKTSENIYCASMTA---MFAGSDFIKTSGSI 212 (214)
Q Consensus 180 lEt~~L~t~e~i~~A~~ia---~~aGaDFIKTSTGf 212 (214)
+--|- +.+...+..+.+ +++|||++=||.|.
T Consensus 198 ~sGGi--~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr 231 (236)
T PF01791_consen 198 ASGGI--DAEDFLRTLEDALEFIEAGADRIGTSSGR 231 (236)
T ss_dssp EESSS--SHHHHHHSHHHHHHHHHTTHSEEEEEEHH
T ss_pred EeCCC--ChHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 88775 455555544444 49999999888773
No 337
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=38.83 E-value=87 Score=23.97 Aligned_cols=69 Identities=14% Similarity=0.076 Sum_probs=47.3
Q ss_pred HHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 132 ELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 132 ~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+..++.=|..++=|+.+| +.|--+.|.+||..-.+. ++-..+|| +.++.. +...-+-++|...||++|.
T Consensus 8 r~~LR~~ah~l~Pvv~IG--k~Glt~~vi~ei~~aL~~-hELIKvkv-~~~~~~---~~~e~~~~i~~~~~ae~Vq 76 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLG--SNGLTEGVLAEIEQALEH-HELIKVKI-ATEDRE---TKTLIVEAIVRETGACNVQ 76 (97)
T ss_pred HHHHHHhcCCCCCeEEEC--CCCCCHHHHHHHHHHHHH-CCcEEEEe-cCCChh---HHHHHHHHHHHHHCCEEEe
Confidence 455566677888899999 899999999999887763 33244553 344321 2233345688888999986
No 338
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=38.52 E-value=84 Score=28.68 Aligned_cols=86 Identities=21% Similarity=0.181 Sum_probs=50.9
Q ss_pred CcccHHHHHHhhhcCCCCCCeEEEe-cCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHH
Q psy965 90 FVSTVWHGSDNLKTKLVYQPCLSQP-AGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKE 168 (214)
Q Consensus 90 ~P~~V~~a~~~L~~~gs~v~vatV~-igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~ 168 (214)
.|..++..++. .++||.+-+ .|| ..|++...+.|+|-||--- .+. .+.+.+..++.
T Consensus 53 ~~~~I~~Ik~~-----V~iPVIGi~K~~~----------~~Ea~~L~eaGvDiIDaT~----r~r----P~~~~~~~iK~ 109 (283)
T cd04727 53 DPKMIKEIMDA-----VSIPVMAKVRIGH----------FVEAQILEALGVDMIDESE----VLT----PADEEHHIDKH 109 (283)
T ss_pred CHHHHHHHHHh-----CCCCeEEeeehhH----------HHHHHHHHHcCCCEEeccC----CCC----cHHHHHHHHHH
Confidence 45555555543 467777652 233 8899999999999998321 111 13444444443
Q ss_pred HhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 169 KCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 169 a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
-- + .-+ .+..+|.+|-. -+.+.|+|||-|-
T Consensus 110 ~~-~---~l~---MAD~stleEal----~a~~~Gad~I~TT 139 (283)
T cd04727 110 KF-K---VPF---VCGARNLGEAL----RRISEGAAMIRTK 139 (283)
T ss_pred Hc-C---CcE---EccCCCHHHHH----HHHHCCCCEEEec
Confidence 21 1 122 23344656654 5678899999975
No 339
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.07 E-value=1.8e+02 Score=27.38 Aligned_cols=129 Identities=14% Similarity=0.115 Sum_probs=76.0
Q ss_pred CCCCCCHHHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHC
Q psy965 58 LSGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQ 137 (214)
Q Consensus 58 L~~~~T~~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~ 137 (214)
+.+..|.++++++-+-..+ ....|.....+.+.|++ ..++|...+ . |.|-..++.=+.++......
T Consensus 205 ~~~~~t~eei~~~~~A~ln----------iv~~~~~~~~~a~~Le~-~fGiP~~~~--~-p~Gi~~t~~~l~~ia~~~g~ 270 (421)
T cd01976 205 WSGDGTLNEMENAHKAKLN----------LIHCYRSMNYIARMMEE-KYGIPWMEY--N-FFGPTKIAESLRKIAAYFDD 270 (421)
T ss_pred eCCCCCHHHHHhcccCCEE----------EEECcHHHHHHHHHHHH-HhCCcEEec--c-cCCHHHHHHHHHHHHHHhCc
Confidence 3456667777665332221 13344445456677875 467886666 4 89999999888888776543
Q ss_pred CCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 138 KVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 138 GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
...+ ....+.......+.+.|...++...+ -||.+-.+-. ....+. ..+.+.|.+=+.++|.|
T Consensus 271 ~~~~-----~~e~~i~~e~~~~~~~l~~~~~~L~G---krv~i~~g~~-~~~~~~---~~l~elGmevv~~g~~~ 333 (421)
T cd01976 271 EITA-----KTEEVIAEYKPAMEAVIAKYRPRLEG---KTVMLYVGGL-RPRHYI---GAYEDLGMEVVGTGYEF 333 (421)
T ss_pred hHHH-----HHHHHHHHHHHHHHHHHHHHHHHcCC---CEEEEECCCC-cHHHHH---HHHHHCCCEEEEEEeec
Confidence 1000 11223333445555666665554444 4777777654 334443 36678999999988765
No 340
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=38.00 E-value=1.9e+02 Score=26.41 Aligned_cols=65 Identities=25% Similarity=0.170 Sum_probs=42.0
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+.|+++|++.|||-| |-=|.+ -+|+++.++..+- .=++++|.+==-|.+++.. -..-|+|||-
T Consensus 198 le~~~eAl~agaDiI-mLDNm~----------~e~~~~av~~l~~--~~~~~lEaSGgIt~~ni~~----yA~tGVD~IS 260 (280)
T COG0157 198 LEEAEEALEAGADII-MLDNMS----------PEELKEAVKLLGL--AGRALLEASGGITLENIRE----YAETGVDVIS 260 (280)
T ss_pred HHHHHHHHHcCCCEE-EecCCC----------HHHHHHHHHHhcc--CCceEEEEeCCCCHHHHHH----HhhcCCCEEE
Confidence 579999999999864 221222 2667766666432 2278888653337777743 3356999997
Q ss_pred cC
Q psy965 208 TS 209 (214)
Q Consensus 208 TS 209 (214)
+|
T Consensus 261 ~g 262 (280)
T COG0157 261 VG 262 (280)
T ss_pred eC
Confidence 65
No 341
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=37.87 E-value=2.3e+02 Score=24.50 Aligned_cols=12 Identities=33% Similarity=0.102 Sum_probs=6.5
Q ss_pred HHHHHHcCCCEE
Q psy965 195 SMTAMFAGSDFI 206 (214)
Q Consensus 195 ~~ia~~aGaDFI 206 (214)
.+.+.++|+|.|
T Consensus 97 i~~~~~aG~~gi 108 (242)
T cd04724 97 LRDAKEAGVDGL 108 (242)
T ss_pred HHHHHHCCCcEE
Confidence 445556666543
No 342
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=37.82 E-value=1.9e+02 Score=26.04 Aligned_cols=83 Identities=10% Similarity=-0.093 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEE-----eccCCCCHHHHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL-----AVGELKTSENIYCA 194 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIl-----Et~~L~t~e~i~~A 194 (214)
|...++.=+..++.|-+.|||-+=++.++ +++ ..-+.+++-.++|.+++++ +-+|+ -|+.--+.+.+.+.
T Consensus 85 ~~~~t~~ai~~a~~A~~~Gad~vlv~~P~-y~~-~~~~~l~~yf~~va~a~~~---lPv~iYn~P~~tg~~l~~~~l~~L 159 (309)
T cd00952 85 TTLNTRDTIARTRALLDLGADGTMLGRPM-WLP-LDVDTAVQFYRDVAEAVPE---MAIAIYANPEAFKFDFPRAAWAEL 159 (309)
T ss_pred ccCCHHHHHHHHHHHHHhCCCEEEECCCc-CCC-CCHHHHHHHHHHHHHhCCC---CcEEEEcCchhcCCCCCHHHHHHH
Confidence 56677788888999999999988655553 333 3457888888888887632 22222 13322255555444
Q ss_pred HHHHHHcCCCEEEcCC
Q psy965 195 SMTAMFAGSDFIKTSG 210 (214)
Q Consensus 195 ~~ia~~aGaDFIKTST 210 (214)
+ ..-+.-.||=|+
T Consensus 160 ~---~~pnivgiKdss 172 (309)
T cd00952 160 A---QIPQVVAAKYLG 172 (309)
T ss_pred h---cCCCEEEEEecC
Confidence 3 234666677654
No 343
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=37.62 E-value=82 Score=27.15 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=50.6
Q ss_pred CcccHHHHHHhhhcCCCCCCeEEEe-cCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHH
Q psy965 90 FVSTVWHGSDNLKTKLVYQPCLSQP-AGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKE 168 (214)
Q Consensus 90 ~P~~V~~a~~~L~~~gs~v~vatV~-igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~ 168 (214)
.|..+...++ ..++||...+ -+||...--.--=+.|+++.++.|||-|=+ | +-...+.+.+.+-+.++++
T Consensus 20 ~~~dI~aik~-----~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAl--D--aT~R~Rp~~l~~li~~i~~ 90 (192)
T PF04131_consen 20 GVEDIRAIKK-----AVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIAL--D--ATDRPRPETLEELIREIKE 90 (192)
T ss_dssp SHHHHHHHHT-----TB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEE--E---SSSS-SS-HHHHHHHHHH
T ss_pred CHHHHHHHHH-----hcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEE--e--cCCCCCCcCHHHHHHHHHH
Confidence 4555555443 3578888883 257743333333356999999999986422 2 1122223555555666654
Q ss_pred HhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 169 KCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 169 a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
. ..-++ +..+|.|+.. .|.++|+|||-|-
T Consensus 91 ~-----~~l~M---ADist~ee~~----~A~~~G~D~I~TT 119 (192)
T PF04131_consen 91 K-----YQLVM---ADISTLEEAI----NAAELGFDIIGTT 119 (192)
T ss_dssp C-----TSEEE---EE-SSHHHHH----HHHHTT-SEEE-T
T ss_pred h-----CcEEe---eecCCHHHHH----HHHHcCCCEEEcc
Confidence 1 22333 3345767765 5568899999863
No 344
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.46 E-value=2.2e+02 Score=24.86 Aligned_cols=84 Identities=7% Similarity=-0.058 Sum_probs=48.7
Q ss_pred HHHHHHHHCCCCEEEEecChhHh-hcCC-hhHHHHHHHHHHHHhcCCceEEEEEeccC----CCCHHH--------HHHH
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLV-LNNQ-WPELFSEVKQMKEKCGEKIHMKTILAVGE----LKTSEN--------IYCA 194 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l-~sg~-~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~----L~t~e~--------i~~A 194 (214)
..++++.+.|++-+++.+.-... +... .+...+++++..+..+- ....+.+=.+| -+.+++ +.++
T Consensus 15 ~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~~ 93 (274)
T TIGR00587 15 AAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKN-LSQIVLVHAPYLINLASPDEEKEEKSLDVLDEE 93 (274)
T ss_pred HHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCC-CCcceeccCCeeeecCCCCHHHHHHHHHHHHHH
Confidence 46888999999999998765432 2221 24445555554443321 00112222222 111233 4556
Q ss_pred HHHHHHcCCCEEEcCCCCC
Q psy965 195 SMTAMFAGSDFIKTSGSIQ 213 (214)
Q Consensus 195 ~~ia~~aGaDFIKTSTGf~ 213 (214)
.+.|.+-|+++|-+-+|+.
T Consensus 94 i~~A~~lga~~vv~H~G~~ 112 (274)
T TIGR00587 94 LKRCELLGIMLYNFHPGSA 112 (274)
T ss_pred HHHHHHcCCCEEEECCCCC
Confidence 6788899999999999974
No 345
>PLN02411 12-oxophytodienoate reductase
Probab=37.29 E-value=2.2e+02 Score=26.65 Aligned_cols=83 Identities=8% Similarity=0.059 Sum_probs=47.3
Q ss_pred HHHHHHHCCCCEEEEecChhHhh----c---------------CChhHHHHHHHHHHHHhcCC-ceEEEEEecc-----C
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVL----N---------------NQWPELFSEVKQMKEKCGEK-IHMKTILAVG-----E 184 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~----s---------------g~~~~v~~Ei~~v~~a~~~~-~~lKvIlEt~-----~ 184 (214)
-|+.|.+.|.|-|++=---|+|+ | +....+.+=|.+|+++|++. .-+|+=-+.. .
T Consensus 170 AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~ 249 (391)
T PLN02411 170 AALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATD 249 (391)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCC
Confidence 35678899999999987777665 2 12234455668888889752 2233321211 1
Q ss_pred CCCHHHHHHHHHHHHH----c--CCCEEEcCCCC
Q psy965 185 LKTSENIYCASMTAMF----A--GSDFIKTSGSI 212 (214)
Q Consensus 185 L~t~e~i~~A~~ia~~----a--GaDFIKTSTGf 212 (214)
-.+.++-...++.... . |.|||-.|.|.
T Consensus 250 ~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~ 283 (391)
T PLN02411 250 SDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPR 283 (391)
T ss_pred CcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCc
Confidence 1122322233332222 3 59999999884
No 346
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=37.04 E-value=1.3e+02 Score=26.76 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
.++.+|...|||-|=....+ ++. +++..+.+.|+. .-|-+++|+. |.+++.+|. ++|++.|
T Consensus 122 ~QI~eA~~~GADaVLLI~~~---L~~------~~l~~l~~~a~~-lGle~lVEVh---~~~El~~al----~~~a~ii 182 (254)
T PF00218_consen 122 YQIYEARAAGADAVLLIAAI---LSD------DQLEELLELAHS-LGLEALVEVH---NEEELERAL----EAGADII 182 (254)
T ss_dssp HHHHHHHHTT-SEEEEEGGG---SGH------HHHHHHHHHHHH-TT-EEEEEES---SHHHHHHHH----HTT-SEE
T ss_pred HHHHHHHHcCCCEeehhHHh---CCH------HHHHHHHHHHHH-cCCCeEEEEC---CHHHHHHHH----HcCCCEE
Confidence 58889999999985444332 321 335566666654 5599999998 668876544 7788875
No 347
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=37.01 E-value=3.5e+02 Score=25.18 Aligned_cols=127 Identities=15% Similarity=0.018 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCC-CCCCCHHHHHHHHHHHHHCCCCEE
Q psy965 64 EAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFP-SGQYLLETRLHEIELLAKQKVDEV 142 (214)
Q Consensus 64 ~~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP-~G~~~~~~K~~E~~~Ai~~GAdEI 142 (214)
...++++++|..- . ....+||.||..-. +...+|.+. | .=..+.+.=+.|++++++.|..-|
T Consensus 16 ~~~~R~lv~Et~l--~-----~~dLI~PlFV~eg~------~~~~~I~sm----Pg~~r~sid~l~~~~~~~~~~Gi~~v 78 (322)
T PRK13384 16 SEAMRDLVRETEV--S-----LSDLIYPIFIEEHI------TDAVPISTL----PGISRLPESALADEIERLYALGIRYV 78 (322)
T ss_pred CHHHHHHHhcCCC--C-----HHHceeeEEEecCC------CCceecCCC----CCcceECHHHHHHHHHHHHHcCCCEE
Confidence 3445666666541 1 23478999996421 223345554 3 123456777889999999999988
Q ss_pred EEecChhHhhcCC-------hhHHHHHHHHHHHHhcC--------------CceEEEEEeccCCCCHHHHHHHHHHH---
Q psy965 143 DIVIQRSLVLNNQ-------WPELFSEVKQMKEKCGE--------------KIHMKTILAVGELKTSENIYCASMTA--- 198 (214)
Q Consensus 143 D~Vin~~~l~sg~-------~~~v~~Ei~~v~~a~~~--------------~~~lKvIlEt~~L~t~e~i~~A~~ia--- 198 (214)
-+-.... -|+.. -..+.+=|+.+++..++ +.|.-++ ..|+..+++-+...++.|
T Consensus 79 ~lFgv~~-~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcGil-~~g~i~ND~Tl~~L~~~Als~ 156 (322)
T PRK13384 79 MPFGISH-HKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVL-HNDEVDNDATVENLVKQSVTA 156 (322)
T ss_pred EEeCCCC-CCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeecccCCCCCceeec-cCCcCccHHHHHHHHHHHHHH
Confidence 7543322 24322 23556778888877532 0133333 446677777777766655
Q ss_pred HHcCCCEEEcC
Q psy965 199 MFAGSDFIKTS 209 (214)
Q Consensus 199 ~~aGaDFIKTS 209 (214)
.+||||+|--|
T Consensus 157 A~AGADiVAPS 167 (322)
T PRK13384 157 AKAGADMLAPS 167 (322)
T ss_pred HHcCCCeEecc
Confidence 47999999765
No 348
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=36.98 E-value=2.5e+02 Score=24.77 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=36.3
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
..++.|.+.|.+-|-+.+... +++.+.+-++..++. +..+-+=+|...-.+++.+.+.++.+.++|+|-|
T Consensus 86 ~~l~~a~~~gv~~iri~~~~~-----~~~~~~~~i~~ak~~---G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i 155 (266)
T cd07944 86 DLLEPASGSVVDMIRVAFHKH-----EFDEALPLIKAIKEK---GYEVFFNLMAISGYSDEELLELLELVNEIKPDVF 155 (266)
T ss_pred HHHHHHhcCCcCEEEEecccc-----cHHHHHHHHHHHHHC---CCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEE
Confidence 355666666766655554332 333333333322221 1344455555444466777777777777777754
No 349
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=36.85 E-value=49 Score=30.30 Aligned_cols=67 Identities=9% Similarity=0.110 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCCCEEEE--------ecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHH
Q psy965 128 LHEIELLAKQKVDEVDI--------VIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAM 199 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~--------Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~ 199 (214)
..+++-|-+.|++||-. |-+=|.-+..+. +.|++|++++. .|+=.+.=.|++ +=+++..
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p----~~I~aIk~~V~--iPVigk~Righ~-------~Ea~~L~ 93 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADP----KMIEEIMDAVS--IPVMAKARIGHF-------VEAQILE 93 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcCCeeecCCH----HHHHHHHHhCC--CCeEEeehhhHH-------HHHHHHH
Confidence 45778888899999744 322233333333 45568887774 677777777774 3356788
Q ss_pred HcCCCEEE
Q psy965 200 FAGSDFIK 207 (214)
Q Consensus 200 ~aGaDFIK 207 (214)
++|+|||=
T Consensus 94 ~~GvDiID 101 (293)
T PRK04180 94 ALGVDYID 101 (293)
T ss_pred HcCCCEEe
Confidence 89999994
No 350
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=36.73 E-value=1.8e+02 Score=23.62 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=34.9
Q ss_pred HHHHHHHHHCCCCEEEEe-cChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 128 LHEIELLAKQKVDEVDIV-IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~V-in~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
..+++.+.+.|++-|-+- .+.... .+...-.+.++++++.++....+.+++. +.+. -.+.+.++|+|.|
T Consensus 15 ~~~~~~~~~~G~~~i~l~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~v~l~~~-----d~~~---~~~~~~~~g~dgv 84 (211)
T cd00429 15 GEELKRLEEAGADWIHIDVMDGHFV--PNLTFGPPVVKALRKHTDLPLDVHLMVE-----NPER---YIEAFAKAGADII 84 (211)
T ss_pred HHHHHHHHHcCCCEEEEecccCCCC--CccccCHHHHHHHHhhCCCcEEEEeeeC-----CHHH---HHHHHHHcCCCEE
Confidence 457888889999887662 111100 1111123566677766622122233332 1112 2445568888885
No 351
>PLN02979 glycolate oxidase
Probab=36.59 E-value=2e+02 Score=27.12 Aligned_cols=73 Identities=8% Similarity=0.109 Sum_probs=46.8
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChh-HHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWP-ELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~-~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
...++.|++.|+|-||+. |.|-- .-++- .-.+=+.++++++++ .+.||+.-|-= +-..+.|| +..|||++
T Consensus 234 ~~dA~~a~~~Gvd~I~Vs-nhGGr-qld~~p~t~~~L~ei~~~~~~--~~~Vi~dGGIr-~G~Di~KA----LALGAdaV 304 (366)
T PLN02979 234 GEDARIAIQAGAAGIIVS-NHGAR-QLDYVPATISALEEVVKATQG--RIPVFLDGGVR-RGTDVFKA----LALGASGI 304 (366)
T ss_pred HHHHHHHHhcCCCEEEEC-CCCcC-CCCCchhHHHHHHHHHHHhCC--CCeEEEeCCcC-cHHHHHHH----HHcCCCEE
Confidence 568899999999999877 55531 11232 224444555555554 37788888844 66667654 34599987
Q ss_pred EcC
Q psy965 207 KTS 209 (214)
Q Consensus 207 KTS 209 (214)
=-+
T Consensus 305 ~iG 307 (366)
T PLN02979 305 FIG 307 (366)
T ss_pred EEc
Confidence 543
No 352
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=36.57 E-value=51 Score=31.60 Aligned_cols=99 Identities=14% Similarity=0.198 Sum_probs=54.0
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHh-cCCceEEEE-E--
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKC-GEKIHMKTI-L-- 180 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~-~~~~~lKvI-l-- 180 (214)
|-.+||-+= +|=.......+.-+..++.|++.|||- |++++ -.||.+.+++.|-.-...- |- .|+-=. .
T Consensus 57 gl~tKVNaN-IGtS~~~~d~~~E~~K~~~A~~~GADt---vMDLS--tggdl~~iR~~il~~~~vpvGT-VPiYqa~~~~ 129 (420)
T PF01964_consen 57 GLRTKVNAN-IGTSSDYSDIEEELEKLKIAEKAGADT---VMDLS--TGGDLDEIRRAILENSPVPVGT-VPIYQAAIRK 129 (420)
T ss_dssp TS--EEEEE-E--------HHHHHHHHHHHHHTT-SE---EEE-----STTHHHHHHHHHHT-SS-EEE--HHHHHHHHT
T ss_pred CCceEEEee-ecCCCCCCCHHHHHHHHHHHHHhCCCE---EEEcC--CCCCHHHHHHHHHHhCCCcccc-chHHHHHHHh
Confidence 567788888 798899999999999999999999985 56766 5689999988875543210 00 010000 1
Q ss_pred --eccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 181 --AVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 181 --Et~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
....+ |.+.+.+..+-=.+.|+||+--=.|
T Consensus 130 ~~~~~~~-t~d~~~~~ie~qa~~GVDfmtiH~g 161 (420)
T PF01964_consen 130 GGSIVDM-TEDDFFDVIEKQAKDGVDFMTIHCG 161 (420)
T ss_dssp TT-GGG---HHHHHHHHHHHHHHT--EEEE-TT
T ss_pred CCChhhC-CHHHHHHHHHHHHHcCCCEEEEccc
Confidence 12346 7788888888888999999864444
No 353
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=36.54 E-value=1.7e+02 Score=25.67 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=38.0
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
.-++.+.+.||+-|=+.-+..++..+ .++|+++++++.-+...|= +..+.-+ ...+.++|||.|
T Consensus 74 ~~A~~~~~~GA~aisvlte~~~f~g~-----~~~l~~v~~~v~iPvl~kd-----fi~~~~q----i~~a~~~GAD~V 137 (260)
T PRK00278 74 EIAKAYEAGGAACLSVLTDERFFQGS-----LEYLRAARAAVSLPVLRKD-----FIIDPYQ----IYEARAAGADAI 137 (260)
T ss_pred HHHHHHHhCCCeEEEEecccccCCCC-----HHHHHHHHHhcCCCEEeee-----ecCCHHH----HHHHHHcCCCEE
Confidence 44566677889888666666655543 5777777776543232222 3323223 345667888876
No 354
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=36.40 E-value=1.9e+02 Score=26.93 Aligned_cols=74 Identities=14% Similarity=0.225 Sum_probs=48.2
Q ss_pred HHHHHHHHCCCCEEEEecChhH-hhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 129 HEIELLAKQKVDEVDIVIQRSL-VLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~-l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
..++.|.+.|+|-|++. |-|- -+.+-. .-.+-+.+++++.++ .+-||.--|.- +-..+.+|- ..|||+|-
T Consensus 233 ~dA~~a~~~G~d~I~vs-nhGGr~ld~~~-~~~~~l~~i~~a~~~--~i~vi~dGGIr-~g~Di~kaL----alGA~~V~ 303 (351)
T cd04737 233 EDADVAINAGADGIWVS-NHGGRQLDGGP-ASFDSLPEIAEAVNH--RVPIIFDSGVR-RGEHVFKAL----ASGADAVA 303 (351)
T ss_pred HHHHHHHHcCCCEEEEe-CCCCccCCCCc-hHHHHHHHHHHHhCC--CCeEEEECCCC-CHHHHHHHH----HcCCCEEE
Confidence 67889999999999886 4432 221211 223556677776654 47788887754 777776543 37999987
Q ss_pred cCCC
Q psy965 208 TSGS 211 (214)
Q Consensus 208 TSTG 211 (214)
-++.
T Consensus 304 iGr~ 307 (351)
T cd04737 304 VGRP 307 (351)
T ss_pred ECHH
Confidence 6553
No 355
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=36.37 E-value=1.4e+02 Score=24.46 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=44.0
Q ss_pred HHHHHHHHHCCCCEEEEe-cChhHhhcCChhHH-HHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCE
Q psy965 128 LHEIELLAKQKVDEVDIV-IQRSLVLNNQWPEL-FSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF 205 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~V-in~~~l~sg~~~~v-~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDF 205 (214)
..|+++|.+.|||-|=+- +.-+.-+.+..... .+-++.+++..++ +.|+..-| . +.+++. .+..+|+|+
T Consensus 114 ~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~v~a~GG-I-~~~~i~----~~~~~Ga~g 184 (212)
T PRK00043 114 LEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGD---IPIVAIGG-I-TPENAP----EVLEAGADG 184 (212)
T ss_pred HHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCC---CCEEEECC-c-CHHHHH----HHHHcCCCE
Confidence 457888999999887331 11111222222222 4556666665542 56666666 5 566664 556789999
Q ss_pred EEcCCC
Q psy965 206 IKTSGS 211 (214)
Q Consensus 206 IKTSTG 211 (214)
|=-+++
T Consensus 185 v~~gs~ 190 (212)
T PRK00043 185 VAVVSA 190 (212)
T ss_pred EEEeHH
Confidence 976654
No 356
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.32 E-value=1.6e+02 Score=24.63 Aligned_cols=70 Identities=27% Similarity=0.343 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
+.+.=..-++.+++.|++-|.+-. ++.++.++.+++++....|. ...+-+-+.++. ++|.++|
T Consensus 22 ~~~~~~~~~~~~~~~Gv~~vqlr~-----k~~~~~e~~~~~~~~~~~~~--------~g~gtvl~~d~~----~~A~~~g 84 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMRLIEITW-----NSDQPAELISQLREKLPECI--------IGTGTILTLEDL----EEAIAAG 84 (187)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC-----CCCCHHHHHHHHHHhCCCcE--------EeEEEEEcHHHH----HHHHHcC
Confidence 445555678899999999988874 45567777777776654442 112222243443 5778899
Q ss_pred CCEEEcC
Q psy965 203 SDFIKTS 209 (214)
Q Consensus 203 aDFIKTS 209 (214)
||||-++
T Consensus 85 Adgv~~p 91 (187)
T PRK07455 85 AQFCFTP 91 (187)
T ss_pred CCEEECC
Confidence 9999654
No 357
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=36.22 E-value=2e+02 Score=27.56 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=47.9
Q ss_pred HHHHHHHHHCC-CCEEEEecChhHhhc-CC-----hhHHHHHHHHHHHHhcC----CceEEEEEeccCCCCHHHHHHHHH
Q psy965 128 LHEIELLAKQK-VDEVDIVIQRSLVLN-NQ-----WPELFSEVKQMKEKCGE----KIHMKTILAVGELKTSENIYCASM 196 (214)
Q Consensus 128 ~~E~~~Ai~~G-AdEID~Vin~~~l~s-g~-----~~~v~~Ei~~v~~a~~~----~~~lKvIlEt~~L~t~e~i~~A~~ 196 (214)
..|++.|.+.| ||-| |+.. -+ |. --.+..+|.++++.... ...+-||.-=| +.|.+.+.
T Consensus 166 ~~eA~~A~~~g~aD~I--vvq~---EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGG-I~tg~~va---- 235 (418)
T cd04742 166 EEQAELARRVPVADDI--TVEA---DSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGG-IGTPEAAA---- 235 (418)
T ss_pred HHHHHHHHhCCCCCEE--EEcc---cCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECC-CCCHHHHH----
Confidence 56888899999 4654 3332 22 11 22456677777765521 12466776666 65866553
Q ss_pred HHHHcCCCEEEcCCCCC
Q psy965 197 TAMFAGSDFIKTSGSIQ 213 (214)
Q Consensus 197 ia~~aGaDFIKTSTGf~ 213 (214)
.|...|||||.|.|-|.
T Consensus 236 AA~alGAd~V~~GT~fl 252 (418)
T cd04742 236 AAFALGADFIVTGSINQ 252 (418)
T ss_pred HHHHcCCcEEeeccHHH
Confidence 56677999999999774
No 358
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.15 E-value=2.8e+02 Score=24.14 Aligned_cols=112 Identities=13% Similarity=0.008 Sum_probs=76.3
Q ss_pred ccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHH
Q psy965 88 RGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMK 167 (214)
Q Consensus 88 cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~ 167 (214)
--+|+.++..++... + ...|++.+-+||.--.+... -+--|.-.|||-|- +|++-..++++-++-|+.++
T Consensus 36 ANFPWvIr~i~Ev~p--~-d~~vSAT~GDvpYKPGT~sl---AalGaav~GaDYiK----VGLYg~kn~~eA~e~m~~vv 105 (235)
T COG1891 36 ANFPWVIREIREVVP--E-DQEVSATVGDVPYKPGTASL---AALGAAVAGADYIK----VGLYGTKNEEEALEVMKNVV 105 (235)
T ss_pred CCChHHHHHHHHhCc--c-ceeeeeeecCCCCCCchHHH---HHHHhHhhCCceEE----EeecccccHHHHHHHHHHHH
Confidence 347888888888765 2 34444443789965444322 34456668999864 56677788999999999999
Q ss_pred HHhcCCceEEEEEeccCCCCHHHHH-----HHHHHHHHcCCCEEEcCC
Q psy965 168 EKCGEKIHMKTILAVGELKTSENIY-----CASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 168 ~a~~~~~~lKvIlEt~~L~t~e~i~-----~A~~ia~~aGaDFIKTST 210 (214)
.+.++.-.-|..+..||- +.-.+- ..-+++.+||+|-.---|
T Consensus 106 rAVkd~d~~k~VVAaGYa-Da~Rvgsv~Pl~~P~vaa~ag~DvaMvDT 152 (235)
T COG1891 106 RAVKDFDPSKKVVAAGYA-DAHRVGSVSPLLLPEVAAEAGADVAMVDT 152 (235)
T ss_pred HHHhccCCCceEEecccc-chhhccCcCccccHHHHHhcCCCEEEEec
Confidence 888763456778888876 433332 234688999999765444
No 359
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=35.89 E-value=1.9e+02 Score=26.31 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=45.1
Q ss_pred HHHHHHHHHCCCCEEEEecCh-----hHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 128 LHEIELLAKQKVDEVDIVIQR-----SLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~-----~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
..+++.+++.|||-|.+-+-- +....|--..-..-+..+.++++. ..+.||-+-| +.+...+.+|- .+|
T Consensus 146 ~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~-~~vpVIA~GG-I~~~~di~kAl----a~G 219 (325)
T cd00381 146 AEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARD-YGVPVIADGG-IRTSGDIVKAL----AAG 219 (325)
T ss_pred HHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhh-cCCcEEecCC-CCCHHHHHHHH----HcC
Confidence 357788889999987752211 111111111222344555555543 2356676555 54777776543 489
Q ss_pred CCEEEcCCCC
Q psy965 203 SDFIKTSGSI 212 (214)
Q Consensus 203 aDFIKTSTGf 212 (214)
||.|--+|-|
T Consensus 220 A~~VmiGt~f 229 (325)
T cd00381 220 ADAVMLGSLL 229 (325)
T ss_pred CCEEEecchh
Confidence 9998776655
No 360
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=35.78 E-value=2.6e+02 Score=24.89 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHH
Q psy965 156 WPELFSEVKQMK 167 (214)
Q Consensus 156 ~~~v~~Ei~~v~ 167 (214)
.+.+.+.++.++
T Consensus 71 ~~~~~~~~~~ir 82 (259)
T PF00290_consen 71 LEKIFELVKEIR 82 (259)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 344445555554
No 361
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=35.72 E-value=75 Score=28.79 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=54.4
Q ss_pred HHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCE------EEEec---ChhHhhcCChhHHHHHHHHHH
Q psy965 97 GSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDE------VDIVI---QRSLVLNNQWPELFSEVKQMK 167 (214)
Q Consensus 97 a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdE------ID~Vi---n~~~l~sg~~~~v~~Ei~~v~ 167 (214)
.++.++..+++++|++. =-++...|. ..++|+..|... -|+|+ |-=.+ .|.++.+.+-++.++
T Consensus 113 ~V~~~~~~~~~~~I~~T------RKT~Pg~R~-l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~-~g~~~~i~~av~~~r 184 (284)
T PRK06096 113 MLALLRERYPDGNIACT------RKAIPGTRL-LATQAVLAAGGLIHRAGCAETILLFANHRHF-LHDPQDWSGAINQLR 184 (284)
T ss_pred HHHHHHhhCCCcEEEec------CcCCCchhH-HHHHHHHcCCCcCccCCcchhhhhHHHHHHH-hCCcccHHHHHHHHH
Confidence 33344322566776665 233333444 567788877533 23331 11111 355556778888888
Q ss_pred HHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 168 EKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 168 ~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+.+++ .|+.+|+. |.|+..+| +++|+|.|-
T Consensus 185 ~~~~~---~kIeVEv~---tleqa~ea----~~agaDiI~ 214 (284)
T PRK06096 185 RHAPE---KKIVVEAD---TPKEAIAA----LRAQPDVLQ 214 (284)
T ss_pred HhCCC---CCEEEECC---CHHHHHHH----HHcCCCEEE
Confidence 76654 57999997 55776544 579999873
No 362
>PRK04302 triosephosphate isomerase; Provisional
Probab=35.68 E-value=2.7e+02 Score=23.54 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHhhccCchhhhccccccCcc--cHHHHHHhhhcCCCCCCeEEEecCCC---CCCCCHHHHHHHHHHHH
Q psy965 61 DDTEAVVETLTLKAIQPLSEELKEKVLRGFVS--TVWHGSDNLKTKLVYQPCLSQPAGFP---SGQYLLETRLHEIELLA 135 (214)
Q Consensus 61 ~~T~~~I~~lc~eA~~~f~~~~~~~~~cv~P~--~V~~a~~~L~~~gs~v~vatV~igFP---~G~~~~~~K~~E~~~Ai 135 (214)
..|..+..++.++..+ +.... ..-.++.|. +++.+++. .++++++- ++. .|.++-+.= ++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~p~~~~l~~v~~~-----~~i~v~aq--~~~~~~~G~~tg~~~---~~~l~ 82 (223)
T PRK04302 15 EATGKDALEIAKAAEK-VSKET-GVRIAVAPQALDIRRVAEE-----VDIPVYAQ--HVDPVEPGSHTGHIL---PEAVK 82 (223)
T ss_pred CCCHHHHHHHHHHHHh-ccccC-CCEEEEECCHHHHHHHHHh-----cCCeEEec--cCCCCCCCCchhhhH---HHHHH
Confidence 3466677666655543 11100 001123333 45554543 35777765 332 365554432 66667
Q ss_pred HCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 136 KQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 136 ~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+.|++-+ ++.+-.. ....+|+....+.+.. .-+.+|++++.. +++.+ +.+.|.|||=
T Consensus 83 ~~G~~~v-ii~~ser------~~~~~e~~~~v~~a~~-~Gl~~I~~v~~~---~~~~~----~~~~~~~~I~ 139 (223)
T PRK04302 83 DAGAVGT-LINHSER------RLTLADIEAVVERAKK-LGLESVVCVNNP---ETSAA----AAALGPDYVA 139 (223)
T ss_pred HcCCCEE-EEecccc------ccCHHHHHHHHHHHHH-CCCeEEEEcCCH---HHHHH----HhcCCCCEEE
Confidence 7999876 3332111 1234567777777765 568999988864 55543 3456889873
No 363
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=35.55 E-value=2.4e+02 Score=26.21 Aligned_cols=87 Identities=11% Similarity=0.057 Sum_probs=56.7
Q ss_pred cCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHH
Q psy965 115 AGFPSGQ-YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 115 igFP~G~-~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~ 193 (214)
+++|.+. .+.+-=+.-++.+.+.||+.|=+.=-.|.+ ....+++=++.+++.. .+-|+.-.=++...-..
T Consensus 134 ~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~---~P~~v~~lv~~l~~~~------~~~l~~H~Hnd~GlA~A 204 (378)
T PRK11858 134 FSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGIL---DPFTMYELVKELVEAV------DIPIEVHCHNDFGMATA 204 (378)
T ss_pred EEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCC---CHHHHHHHHHHHHHhc------CCeEEEEecCCcCHHHH
Confidence 3667555 445555555667778999998555334432 4667777777777643 34466665545444445
Q ss_pred HHHHHHHcCCCEEEcCC
Q psy965 194 ASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 194 A~~ia~~aGaDFIKTST 210 (214)
-+..|+++|+++|-+|-
T Consensus 205 N~laAv~aGa~~vd~tv 221 (378)
T PRK11858 205 NALAGIEAGAKQVHTTV 221 (378)
T ss_pred HHHHHHHcCCCEEEEee
Confidence 56788999999998874
No 364
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=35.53 E-value=2.2e+02 Score=24.24 Aligned_cols=88 Identities=17% Similarity=0.115 Sum_probs=46.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEec----cC----C-C
Q psy965 116 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV----GE----L-K 186 (214)
Q Consensus 116 gFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt----~~----L-~ 186 (214)
+|| ..+++. .++.+.+.|.+-|++..+.......++ -..+++++++.... ..+++.-=. ++ + .
T Consensus 9 ~~~--~~~l~~---~l~~~~~~G~~~vEl~~~~~~~~~~~~--~~~~~~~l~~~~~~-~gl~v~s~~~~~~~~~~~~~~~ 80 (275)
T PRK09856 9 GHQ--RLPIEH---AFRDASELGYDGIEIWGGRPHAFAPDL--KAGGIKQIKALAQT-YQMPIIGYTPETNGYPYNMMLG 80 (275)
T ss_pred hhe--eCCHHH---HHHHHHHcCCCEEEEccCCcccccccc--CchHHHHHHHHHHH-cCCeEEEecCcccCcCccccCC
Confidence 555 234444 345667789998888644332111111 12345555555433 234443211 11 1 1
Q ss_pred C-------HHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 187 T-------SENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 187 t-------~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
+ .+.+.++++.|...|+..|-+..|
T Consensus 81 ~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~ 112 (275)
T PRK09856 81 DEHMRRESLDMIKLAMDMAKEMNAGYTLISAA 112 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 2 134556778888899999887665
No 365
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=35.51 E-value=2.6e+02 Score=24.87 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=46.4
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
..+++.+.+.|||-|++.-.-|.-..+. ..-.+-+.++++.+++ .+.||..-| +.+.+.+.++- ..|||.|-
T Consensus 183 ~~~a~~a~~~G~d~I~v~~~gG~~~~~g-~~~~~~l~~i~~~~~~--~ipvia~GG-I~~~~d~~kal----~lGAd~V~ 254 (299)
T cd02809 183 PEDALRAVDAGADGIVVSNHGGRQLDGA-PATIDALPEIVAAVGG--RIEVLLDGG-IRRGTDVLKAL----ALGADAVL 254 (299)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCCC-cCHHHHHHHHHHHhcC--CCeEEEeCC-CCCHHHHHHHH----HcCCCEEE
Confidence 4678999999999999873322211111 1123445556665543 256777666 54777776554 47999986
Q ss_pred cCCC
Q psy965 208 TSGS 211 (214)
Q Consensus 208 TSTG 211 (214)
-+|-
T Consensus 255 ig~~ 258 (299)
T cd02809 255 IGRP 258 (299)
T ss_pred EcHH
Confidence 5543
No 366
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=35.20 E-value=1.9e+02 Score=24.95 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=17.3
Q ss_pred HHHHHHH-CCCCEEEEecChhHhhcCC
Q psy965 130 EIELLAK-QKVDEVDIVIQRSLVLNNQ 155 (214)
Q Consensus 130 E~~~Ai~-~GAdEID~Vin~~~l~sg~ 155 (214)
-++...+ .||+|+=+| |+...+.|.
T Consensus 36 ~a~~~~~~~Ga~~l~iv-DLd~a~~~~ 61 (234)
T PRK13587 36 SIAYYSQFECVNRIHIV-DLIGAKAQH 61 (234)
T ss_pred HHHHHHhccCCCEEEEE-ECcccccCC
Confidence 4555556 699999555 888876554
No 367
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=35.11 E-value=4.1e+02 Score=26.59 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEe----cCh--hHhhcCChhHHHHHHHHHHHHhcCCceEEEEEe----ccCCC-CHH
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDIV----IQR--SLVLNNQWPELFSEVKQMKEKCGEKIHMKTILA----VGELK-TSE 189 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~V----in~--~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlE----t~~L~-t~e 189 (214)
..+++.|+.=++..-+.|.+.|++- ++. .++....|+ -|+.+++..++ ..+-.++= .|+-. .++
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e----~lr~l~~~~~~-~~lqml~Rg~n~vg~~~ypdd 97 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWE----RLRELKKAMPN-TPQQMLLRGQNLLGYRHYADD 97 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHH----HHHHHHHhCCC-CeEEEEecCcceeccccCcHH
Confidence 3566777777777777788777772 332 223333433 34445544443 44444442 12221 122
Q ss_pred HHHHHHHHHHHcCCCEEEcC
Q psy965 190 NIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 190 ~i~~A~~ia~~aGaDFIKTS 209 (214)
-+..-.+.+.+.|+|.|-..
T Consensus 98 vv~~~v~~a~~~Gid~~rif 117 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVF 117 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEe
Confidence 34445566666666665543
No 368
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=35.02 E-value=2.9e+02 Score=24.50 Aligned_cols=13 Identities=15% Similarity=-0.102 Sum_probs=6.7
Q ss_pred HHHHHHHcCCCEE
Q psy965 194 ASMTAMFAGSDFI 206 (214)
Q Consensus 194 A~~ia~~aGaDFI 206 (214)
-+..|.++|+|-|
T Consensus 111 F~~~~~~aGvdgv 123 (263)
T CHL00200 111 FIKKISQAGVKGL 123 (263)
T ss_pred HHHHHHHcCCeEE
Confidence 3455555555543
No 369
>PF04776 DUF626: Protein of unknown function (DUF626); InterPro: IPR006462 These sequences comprise a paralogous family of hypothetical proteins in Arabidopsis thaliana (Mouse-ear cress). No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The proteins have no known function.
Probab=34.99 E-value=54 Score=26.09 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=32.6
Q ss_pred EecChhHhhcCChhHHHHHHHHHHHHhcC-------CceEEEEEeccC
Q psy965 144 IVIQRSLVLNNQWPELFSEVKQMKEKCGE-------KIHMKTILAVGE 184 (214)
Q Consensus 144 ~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~-------~~~lKvIlEt~~ 184 (214)
++++-+-+...+|=.+|-|+.-...--.. -..+||++||.+
T Consensus 19 Y~v~eSEl~~ndWi~LY~Elal~s~~~~~~~~~l~~L~I~kV~ieT~e 66 (118)
T PF04776_consen 19 YEVKESELQENDWIRLYLELALFSKWRSIMDDDLSPLEIKKVAIETKE 66 (118)
T ss_pred EEeehHHhhhchHHHHHHHHHhhhhhccccccccCcceEEEEEEEeec
Confidence 57889999999999999999888753221 147899999964
No 370
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=34.80 E-value=3.8e+02 Score=24.89 Aligned_cols=126 Identities=18% Similarity=0.084 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCC-CCCCHHHHHHHHHHHHHCCCCEEE
Q psy965 65 AVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPS-GQYLLETRLHEIELLAKQKVDEVD 143 (214)
Q Consensus 65 ~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~-G~~~~~~K~~E~~~Ai~~GAdEID 143 (214)
.-++++++|.. +. ...-+||.||.... +...+|.+. |- =..+.+.=+.|++++++.|..-+-
T Consensus 7 ~~~R~lv~Et~--L~-----~~dLI~PlFV~eg~------~~~~~I~sM----PG~~r~s~d~l~~~~~~~~~~Gi~~v~ 69 (314)
T cd00384 7 PALRDLVRETR--LS-----PDDLIYPLFVVEGI------DEKEEISSM----PGVYRLSVDSLVEEAEELADLGIRAVI 69 (314)
T ss_pred hHHHHHHHcCC--CC-----HHHceeeEEEecCC------CCccccCCC----CCceeeCHHHHHHHHHHHHHCCCCEEE
Confidence 34566666554 11 23478999997432 233455554 41 234577888999999999999987
Q ss_pred EecChhHhhcCC-------hhHHHHHHHHHHHHhcC--------------CceEEEEEeccCCCCHHHHHHHHHHHH---
Q psy965 144 IVIQRSLVLNNQ-------WPELFSEVKQMKEKCGE--------------KIHMKTILAVGELKTSENIYCASMTAM--- 199 (214)
Q Consensus 144 ~Vin~~~l~sg~-------~~~v~~Ei~~v~~a~~~--------------~~~lKvIlEt~~L~t~e~i~~A~~ia~--- 199 (214)
+-.-. ..|+.. -..+.+=|+.+++..++ +.|.- |+..+...+++-+...++.|.
T Consensus 70 LFgv~-~~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc~YT~hGHcG-il~~~~idND~Tl~~L~k~Als~A 147 (314)
T cd00384 70 LFGIP-EHKDEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLCEYTDHGHCG-ILKDDYVDNDATLELLAKIAVSHA 147 (314)
T ss_pred EECCC-CCCCCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcce-eccCCcCccHHHHHHHHHHHHHHH
Confidence 76442 334332 23456677888877643 01222 334456767777776666554
Q ss_pred HcCCCEEEcC
Q psy965 200 FAGSDFIKTS 209 (214)
Q Consensus 200 ~aGaDFIKTS 209 (214)
+||||+|--|
T Consensus 148 ~AGADiVAPS 157 (314)
T cd00384 148 EAGADIVAPS 157 (314)
T ss_pred HcCCCeeecc
Confidence 7999999755
No 371
>PRK10494 hypothetical protein; Provisional
Probab=34.61 E-value=3.2e+02 Score=24.06 Aligned_cols=104 Identities=11% Similarity=0.052 Sum_probs=69.4
Q ss_pred cHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcC
Q psy965 93 TVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE 172 (214)
Q Consensus 93 ~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~ 172 (214)
++..+.+..++ +...++... -|.+.|....|..+ -.+.+++.|..+=++++.- +-.--+++....++..+.
T Consensus 108 Rl~~a~~L~r~-~~~~~ii~S-Gg~~~~~~~sEA~~-~~~~l~~lGVp~~~Ii~e~------~s~nT~eNa~~~~~~~~~ 178 (259)
T PRK10494 108 RLTEGIRLWRA-NPGAKLIFT-GGAAKTNTVSTAEV-GARVAQSLGVPREDIITLD------LPKDTEEEAAAVKQAIGD 178 (259)
T ss_pred HHHHHHHHHHh-CCCCEEEEE-CCCCCCCCCCHHHH-HHHHHHHcCCCHHHeeeCC------CCCCHHHHHHHHHHHhCC
Confidence 67777776664 555566555 45666666666665 4678889999886665433 333445666666666654
Q ss_pred CceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 173 KIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 173 ~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
. ++||=|+. -...||..+....|.+-|=-.|+|
T Consensus 179 -~--~iiLVTsa----~Hm~RA~~~f~~~Gl~v~p~Ptd~ 211 (259)
T PRK10494 179 -A--PFLLVTSA----SHLPRAMIFFQQEGLNPLPAPANQ 211 (259)
T ss_pred -C--CEEEECCH----HHHHHHHHHHHHcCCceeecCCcc
Confidence 2 46776653 468899999999998877777766
No 372
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=34.61 E-value=2.3e+02 Score=24.09 Aligned_cols=70 Identities=10% Similarity=0.032 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCCEEEEecChhHhhcCChhHH-HHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCE
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPEL-FSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF 205 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v-~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDF 205 (214)
...+++.|.+.|||-+=|+..- +....| .++.+++.+.+++ ...+|-+ +-.- +.+++ .+++.+.|.|+
T Consensus 12 ~~eda~~~~~~Gad~iGfI~~~-----~S~R~V~~~~a~~i~~~~~~-~i~~VgV-f~~~-~~~~i---~~~~~~~~~d~ 80 (210)
T PRK01222 12 TPEDAEAAAELGADAIGFVFYP-----KSPRYVSPEQAAELAAALPP-FVKVVGV-FVNA-SDEEI---DEIVETVPLDL 80 (210)
T ss_pred cHHHHHHHHHcCCCEEEEccCC-----CCCCcCCHHHHHHHHHhCCC-CCCEEEE-EeCC-CHHHH---HHHHHhcCCCE
Confidence 5678999999999999997422 122234 4566677776664 2223332 2212 44555 45566788888
Q ss_pred EE
Q psy965 206 IK 207 (214)
Q Consensus 206 IK 207 (214)
|.
T Consensus 81 vQ 82 (210)
T PRK01222 81 LQ 82 (210)
T ss_pred EE
Confidence 86
No 373
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=34.45 E-value=2.2e+02 Score=26.41 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=45.0
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCCh-hHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQW-PELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~-~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
...++.+.+.|++-||+- |-|--- -|| -.-.+-+.++++++++ .+.||+.-|-- +-..+.|| +..|||+|
T Consensus 236 ~~da~~~~~~G~~~i~vs-~hGGr~-~d~~~~~~~~L~~i~~~~~~--~~~i~~dgGir-~g~Dv~ka----laLGA~~v 306 (356)
T PF01070_consen 236 PEDAKRAVDAGVDGIDVS-NHGGRQ-LDWGPPTIDALPEIRAAVGD--DIPIIADGGIR-RGLDVAKA----LALGADAV 306 (356)
T ss_dssp HHHHHHHHHTT-SEEEEE-SGTGTS-STTS-BHHHHHHHHHHHHTT--SSEEEEESS---SHHHHHHH----HHTT-SEE
T ss_pred HHHHHHHHhcCCCEEEec-CCCccc-CccccccccccHHHHhhhcC--CeeEEEeCCCC-CHHHHHHH----HHcCCCeE
Confidence 467889999999999987 554322 122 3445667777777764 57889988855 66667655 35588876
No 374
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=34.28 E-value=1.3e+02 Score=27.19 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=41.0
Q ss_pred ecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 145 VIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 145 Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
.+|.-.+-+.-.++..+++..+++..+ .-+|+-.+-- +.++..++++.+.++|+|+|--
T Consensus 75 ~~n~~gl~n~g~d~~~~~i~~~~~~~~----~pvi~sI~g~-~~~e~~~~a~~~~~agad~iel 133 (334)
T PRK07565 75 YFPEPAKFYVGPEEYLELIRRAKEAVD----IPVIASLNGS-SAGGWVDYARQIEQAGADALEL 133 (334)
T ss_pred hhhhhhccCcCHHHHHHHHHHHHHhcC----CcEEEEeccC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 456545555567888888888776442 3456666544 6677778888888899999854
No 375
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=34.21 E-value=4.3e+02 Score=26.17 Aligned_cols=90 Identities=16% Similarity=0.056 Sum_probs=59.5
Q ss_pred CCCCCCC-----CHHHHHHHHHHHHHCCCC---EEEEecChhH-hhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCC
Q psy965 116 GFPSGQY-----LLETRLHEIELLAKQKVD---EVDIVIQRSL-VLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK 186 (214)
Q Consensus 116 gFP~G~~-----~~~~K~~E~~~Ai~~GAd---EID~Vin~~~-l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~ 186 (214)
++|++.. ..+--+.=++.+++.|++ ..+.+ |+.. +=......+++-+..+++..+. ..+++|+.-.=+
T Consensus 170 ~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i-~l~DTvG~a~P~~~~~~i~~l~~~~~~--~~~~~l~vH~HN 246 (564)
T TIGR00970 170 RFEYSPESFSDTELEFAKEVCEAVKEVWAPTPERPIIF-NLPATVEMTTPNVYADSIEYFSTNIAE--REKVCLSLHPHN 246 (564)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHhCCCccCCeeEE-EeccccCccCHHHHHHHHHHHHHhcCc--ccCceEEEEECC
Confidence 5555544 456656667777888764 33332 3322 3344667888888888876654 346788988775
Q ss_pred CHHHHHHHHHHHHHcCCCEEEc
Q psy965 187 TSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 187 t~e~i~~A~~ia~~aGaDFIKT 208 (214)
+...-..-+..|+++||+.|-.
T Consensus 247 D~GlAvANslaAv~aGa~~v~g 268 (564)
T TIGR00970 247 DRGTAVAAAELGFLAGADRIEG 268 (564)
T ss_pred CCChHHHHHHHHHHhCCCEEEe
Confidence 6555556678899999999974
No 376
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=34.14 E-value=1.3e+02 Score=26.31 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=30.9
Q ss_pred EecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 144 IVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 144 ~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
-++|..-+-+.-.+.+.+++...++...+ .+ +|+-.+-- +.++..++++.+.++|+|+|-
T Consensus 70 ~~~n~~g~~~~g~~~~~~~i~~~~~~~~~-~p--vi~si~g~-~~~~~~~~a~~~~~~G~d~ie 129 (289)
T cd02810 70 GILNSFGLPNLGLDVWLQDIAKAKKEFPG-QP--LIASVGGS-SKEDYVELARKIERAGAKALE 129 (289)
T ss_pred eEeecCCCCCcCHHHHHHHHHHHHhccCC-Ce--EEEEeccC-CHHHHHHHHHHHHHhCCCEEE
Confidence 34455444555556666666665543111 22 33333322 445666666666666777664
No 377
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=34.13 E-value=3.2e+02 Score=23.94 Aligned_cols=83 Identities=17% Similarity=0.086 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEe-----ccCCCCHHHHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILA-----VGELKTSENIYCA 194 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlE-----t~~L~t~e~i~~A 194 (214)
|...++.=+..++.|.+.|||-+=++.+.- +. ...+.+++-.++|.++++ +.+++= +|.--+.+.+.+.
T Consensus 78 ~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~-~~-~~~~~i~~~~~~ia~~~~----~pv~lYn~P~~~g~~l~~~~~~~L 151 (292)
T PRK03170 78 GSNSTAEAIELTKFAEKAGADGALVVTPYY-NK-PTQEGLYQHFKAIAEATD----LPIILYNVPGRTGVDILPETVARL 151 (292)
T ss_pred CCchHHHHHHHHHHHHHcCCCEEEECCCcC-CC-CCHHHHHHHHHHHHhcCC----CCEEEEECccccCCCCCHHHHHHH
Confidence 455688888899999999999986666543 22 245777777788877664 233332 3433355656544
Q ss_pred HHHHHHcCCCEEEcCCC
Q psy965 195 SMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 195 ~~ia~~aGaDFIKTSTG 211 (214)
+..-..-+||-|+|
T Consensus 152 ---~~~p~v~giK~s~~ 165 (292)
T PRK03170 152 ---AEHPNIVGIKEATG 165 (292)
T ss_pred ---HcCCCEEEEEECCC
Confidence 33357788888776
No 378
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=34.09 E-value=3.4e+02 Score=25.29 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=67.2
Q ss_pred ccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEecCh-hHhhc-------CCh
Q psy965 86 VLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSG-QYLLETRLHEIELLAKQKVDEVDIVIQR-SLVLN-------NQW 156 (214)
Q Consensus 86 ~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G-~~~~~~K~~E~~~Ai~~GAdEID~Vin~-~~l~s-------g~~ 156 (214)
..-+||.||... .+.+ --+ -+.|-= ..+.+.=+.|++++++.|..-+-+-.-+ ...|+ ..-
T Consensus 27 ~dLI~PlFV~eg--------~~~~-~~I-~smPg~~r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~ 96 (324)
T PF00490_consen 27 SDLIYPLFVVEG--------ENEK-EPI-SSMPGVYRYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPD 96 (324)
T ss_dssp GGEEEEEEEESS--------SSSE-EEE-TTSTTEEEEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTT
T ss_pred HHeEEEEEEecC--------CCcc-eec-cCCCCeeeeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCC
Confidence 347899998742 2321 112 344522 3457888899999999999988774321 22333 234
Q ss_pred hHHHHHHHHHHHHhcCC--------------ceEEEEE--eccCCCCHHHHHHHHHHH---HHcCCCEEEcC
Q psy965 157 PELFSEVKQMKEKCGEK--------------IHMKTIL--AVGELKTSENIYCASMTA---MFAGSDFIKTS 209 (214)
Q Consensus 157 ~~v~~Ei~~v~~a~~~~--------------~~lKvIl--Et~~L~t~e~i~~A~~ia---~~aGaDFIKTS 209 (214)
..+.+=|+++++..++- .|.- |+ +.|+..+++-+...++.| .+||||.|-.|
T Consensus 97 g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcG-il~~~~g~idND~Tl~~Lak~Al~~A~AGADiVAPS 167 (324)
T PF00490_consen 97 GLVQRAIRAIKKAFPDLLVITDVCLCEYTSHGHCG-ILDDEDGEIDNDETLERLAKQALSHAEAGADIVAPS 167 (324)
T ss_dssp SHHHHHHHHHHHHSTTSEEEEEE-STTTBTSSSSS-EB-CTTSSBEHHHHHHHHHHHHHHHHHHT-SEEEE-
T ss_pred ChHHHHHHHHHHhCCCcEEEEecccccccCCCceE-EEECCCCeEecHHHHHHHHHHHHHHHHhCCCeeccc
Confidence 56778888888876530 1122 33 677776666666666555 57999999766
No 379
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=33.97 E-value=3e+02 Score=24.57 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=68.6
Q ss_pred CcccHHHHHHhhhcCCCCCCeEEEec-----CCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhh-cCChhHHHHHH
Q psy965 90 FVSTVWHGSDNLKTKLVYQPCLSQPA-----GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVL-NNQWPELFSEV 163 (214)
Q Consensus 90 ~P~~V~~a~~~L~~~gs~v~vatV~i-----gFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~-sg~~~~v~~Ei 163 (214)
.+-.++.+++. .++||-+. | +|-....-.+.-..+++.+.+.|||. +|+ |.|. +|+.+. +=+
T Consensus 39 S~g~i~~~~~~-----~~ipv~vM-IRPR~gdF~Ys~~E~~~M~~di~~~~~~GadG--vV~--G~L~~dg~vD~--~~~ 106 (248)
T PRK11572 39 SLGVLKSVRER-----VTIPVHPI-IRPRGGDFCYSDGEFAAMLEDIATVRELGFPG--LVT--GVLDVDGHVDM--PRM 106 (248)
T ss_pred CHHHHHHHHHh-----cCCCeEEE-EecCCCCCCCCHHHHHHHHHHHHHHHHcCCCE--EEE--eeECCCCCcCH--HHH
Confidence 34456666553 34666655 3 67777777889999999999999997 442 3333 333332 335
Q ss_pred HHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 164 KQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 164 ~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
+.+.+++++ +++.+=-+.=.. .+..+|-+..++.|.|-|=||-|.
T Consensus 107 ~~Li~~a~~---~~vTFHRAfD~~-~d~~~al~~l~~lG~~rILTSGg~ 151 (248)
T PRK11572 107 RKIMAAAGP---LAVTFHRAFDMC-ANPLNALKQLADLGVARILTSGQQ 151 (248)
T ss_pred HHHHHHhcC---CceEEechhhcc-CCHHHHHHHHHHcCCCEEECCCCC
Confidence 667777764 555553331111 123478888899999999999874
No 380
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=33.88 E-value=48 Score=22.64 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=31.4
Q ss_pred eEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 175 HMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 175 ~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
.+.+-+..|.+ +.++....++++.+.|..+|+-+|.
T Consensus 11 ~v~~~~~~G~i-~~~~l~~la~ia~~yg~~~irlT~~ 46 (69)
T PF03460_consen 11 MVRIRIPGGRI-SAEQLRALAEIAEKYGDGEIRLTTR 46 (69)
T ss_dssp EEEEB-GGGEE-EHHHHHHHHHHHHHHSTSEEEEETT
T ss_pred EEEEeCCCEEE-CHHHHHHHHHHHHHhCCCeEEECCC
Confidence 68888999999 7899999999999999999998764
No 381
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=33.49 E-value=2.4e+02 Score=26.50 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=46.8
Q ss_pred HHHHHHHH--CCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 129 HEIELLAK--QKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 129 ~E~~~Ai~--~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
.-++..++ .|+|- +|||. -.|+-+.+.+=|+.+++..++ + .|+--. ..|.| +++-.+++|||.|
T Consensus 111 er~~~L~~~~~g~D~--iviD~---AhGhs~~~i~~ik~ik~~~P~---~-~vIaGN-V~T~e----~a~~Li~aGAD~v 176 (346)
T PRK05096 111 EKTKQILALSPALNF--ICIDV---ANGYSEHFVQFVAKAREAWPD---K-TICAGN-VVTGE----MVEELILSGADIV 176 (346)
T ss_pred HHHHHHHhcCCCCCE--EEEEC---CCCcHHHHHHHHHHHHHhCCC---C-cEEEec-ccCHH----HHHHHHHcCCCEE
Confidence 34445555 47776 67787 468899999999999987764 2 233333 43654 4556788999999
Q ss_pred EcCCC
Q psy965 207 KTSGS 211 (214)
Q Consensus 207 KTSTG 211 (214)
|-.-|
T Consensus 177 KVGIG 181 (346)
T PRK05096 177 KVGIG 181 (346)
T ss_pred EEccc
Confidence 95433
No 382
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=33.48 E-value=2.3e+02 Score=25.97 Aligned_cols=106 Identities=11% Similarity=0.057 Sum_probs=58.6
Q ss_pred cCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHH
Q psy965 89 GFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKE 168 (214)
Q Consensus 89 v~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~ 168 (214)
++|.+-..+.+.|++ ..+++... .+|.|...++.=+.++.+.... .+ +...+.....+.+.+.+...++
T Consensus 214 ~~~~~~~~~a~~L~~-r~GiP~~~---~~p~G~~~t~~~l~~l~~~lg~--~~-----~~~~~i~~~~~~~~~~l~~~~~ 282 (406)
T cd01967 214 HCSRSMNYLAREMEE-RYGIPYME---VNFYGFEDTSESLRKIAKFFGD--EE-----KAEEVIAEEEARIKPELEKYRE 282 (406)
T ss_pred EChHHHHHHHHHHHH-hhCCCEEE---ecCCcHHHHHHHHHHHHHHhCC--HH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 345333444455654 35677632 4799999888887777665442 11 2233333344445555555554
Q ss_pred HhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 169 KCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 169 a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
...+ -||.+.++.- .... .+.+..+.|.+-+..+|.+
T Consensus 283 ~l~g---krv~I~~~~~---~~~~-~~~~l~elG~~v~~~~~~~ 319 (406)
T cd01967 283 RLKG---KKVIIYTGGA---RSWH-VIAALRELGMEVVAAGYEF 319 (406)
T ss_pred hccC---CEEEEEccCc---chHH-HHHHHHHcCCEEEEEEEec
Confidence 3333 3556654421 2232 3378889999887766654
No 383
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=33.46 E-value=1.6e+02 Score=22.68 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=48.8
Q ss_pred HHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 132 ELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 132 ~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+..+..-|..++-++++| +.|--+.+.+||..-.++ ++ .+||=+--....+..+ -|-.+|...|++-|.
T Consensus 7 ~~~Lrs~Ah~l~piv~IG--k~Glte~vi~Ei~~aL~~-re--LIKVkvl~~~~edr~e--ia~~l~~~~~a~lVq 75 (97)
T COG1534 7 KRFLRSKAHHLKPIVQIG--KNGLTEGVIKEIDRALEA-RE--LIKVKVLQNAREDKKE--IAEALAEETGAELVQ 75 (97)
T ss_pred HHHHHHhhccCCceEEec--CCccCHHHHHHHHHHHHh-CC--cEEEEeeccchhhHHH--HHHHHHHHhCCEEee
Confidence 345566688899999999 899999999999887764 32 4666554444423333 356678888998775
No 384
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=33.18 E-value=3.8e+02 Score=26.74 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccC--CCCHHHHHHHHHHHH
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGE--LKTSENIYCASMTAM 199 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~--L~t~e~i~~A~~ia~ 199 (214)
.+-++.-..++.|+++|.|.|-+....+.+ +.+..=+...++. | ..+-+-+.... .-+.+...+.++.+.
T Consensus 88 ypddvv~~~v~~a~~~Gvd~irif~~lnd~-----~n~~~~i~~ak~~-G--~~v~~~i~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 88 YADDVVERFVKKAVENGMDVFRIFDALNDP-----RNLQAAIQAAKKH-G--AHAQGTISYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred CchhhHHHHHHHHHHCCCCEEEEEEecCcH-----HHHHHHHHHHHHc-C--CEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 445666667889999999998888766654 2233333333221 2 33333332221 125677888888889
Q ss_pred HcCCCEE--EcCCC
Q psy965 200 FAGSDFI--KTSGS 211 (214)
Q Consensus 200 ~aGaDFI--KTSTG 211 (214)
++|+|-| |=++|
T Consensus 160 ~~Gad~I~i~Dt~G 173 (582)
T TIGR01108 160 EMGVDSICIKDMAG 173 (582)
T ss_pred HcCCCEEEECCCCC
Confidence 9999976 44444
No 385
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=33.06 E-value=1e+02 Score=30.83 Aligned_cols=100 Identities=13% Similarity=0.039 Sum_probs=71.2
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHh-cC----CceEEEE
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKC-GE----KIHMKTI 179 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~-~~----~~~lKvI 179 (214)
|-.+||=+= ||=....+..+.-+..+++|++.|||- |++++ -.||.+.+++.|-.-...- |- .+..|+.
T Consensus 213 ~~~tKVNAN-IGtS~~~s~ieeEveK~~~A~~~GADt---vMDLS--TGgdi~~~R~~Il~~spvPvGTVPiYqA~~~~~ 286 (607)
T PRK09284 213 NFLVKINAN-IGNSAVTSSIEEEVEKMVWATRWGADT---VMDLS--TGKNIHETREWILRNSPVPIGTVPIYQALEKVN 286 (607)
T ss_pred CceeEEEee-ecCCCCCCCHHHHHHHHHHHHHcCCCE---EEecC--CCCCHHHHHHHHHHcCCCCccCccHHHHHHHhc
Confidence 456788888 799999999999999999999999985 66776 5678888888775433211 11 0223333
Q ss_pred EeccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 180 LAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 180 lEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
=..-.| |.|......+-=.+-|+||+--=.|
T Consensus 287 ~~~~~l-t~e~~~d~ieeQAeqGVDf~TIHaG 317 (607)
T PRK09284 287 GVAEDL-TWEIFRDTLIEQAEQGVDYFTIHAG 317 (607)
T ss_pred CChhhC-CHHHHHHHHHHHHHhCCCEEEEChh
Confidence 233457 7788888888888889999865444
No 386
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=32.84 E-value=2.1e+02 Score=24.76 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=47.3
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+..++.|++.|++-+=+- -|+......++..++++++|+. ..+.+|+.-- .++|.+.|||.|-
T Consensus 24 ~~~ve~al~~Gv~~vQlR-----~K~~~~~~~~~~a~~~~~lc~~-~~v~liINd~-----------~dlA~~~~AdGVH 86 (211)
T COG0352 24 LEWVEAALKGGVTAVQLR-----EKDLSDEEYLALAEKLRALCQK-YGVPLIINDR-----------VDLALAVGADGVH 86 (211)
T ss_pred HHHHHHHHhCCCeEEEEe-----cCCCChHHHHHHHHHHHHHHHH-hCCeEEecCc-----------HHHHHhCCCCEEE
Confidence 778999999997654432 2556666668888999999986 4567776322 3577789999986
Q ss_pred cCC
Q psy965 208 TSG 210 (214)
Q Consensus 208 TST 210 (214)
-+.
T Consensus 87 lGq 89 (211)
T COG0352 87 LGQ 89 (211)
T ss_pred cCC
Confidence 543
No 387
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=32.75 E-value=2.2e+02 Score=28.04 Aligned_cols=82 Identities=9% Similarity=0.024 Sum_probs=53.6
Q ss_pred CCCeEEEecCCC-CCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC
Q psy965 107 YQPCLSQPAGFP-SGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 185 (214)
Q Consensus 107 ~v~vatV~igFP-~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L 185 (214)
...+..+ +|+| +|-++...++.+ ..|+ .++|...+. .|+...+.+ .++... ---||++..-+
T Consensus 368 ~p~LVil-~G~pGSGKST~A~~l~~-----~~g~----~~vn~D~lg--~~~~~~~~a---~~~L~~--G~sVVIDaTn~ 430 (526)
T TIGR01663 368 PCEMVIA-VGFPGAGKSHFCKKFFQ-----PAGY----KHVNADTLG--STQNCLTAC---ERALDQ--GKRCAIDNTNP 430 (526)
T ss_pred CceEEEE-ECCCCCCHHHHHHHHHH-----HcCC----eEECcHHHH--HHHHHHHHH---HHHHhC--CCcEEEECCCC
Confidence 3456666 7999 677777666544 2465 356776663 455444332 333222 23689999988
Q ss_pred CCHHHHHHHHHHHHHcCCCEE
Q psy965 186 KTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 186 ~t~e~i~~A~~ia~~aGaDFI 206 (214)
+.++......+|.+.|+.+.
T Consensus 431 -~~~~R~~~i~lAk~~gv~v~ 450 (526)
T TIGR01663 431 -DAASRAKFLQCARAAGIPCR 450 (526)
T ss_pred -CHHHHHHHHHHHHHcCCeEE
Confidence 77788888999999998773
No 388
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=32.71 E-value=1.8e+02 Score=28.79 Aligned_cols=77 Identities=12% Similarity=0.105 Sum_probs=46.9
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCCh--hHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHH-------HHHHHHH
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQW--PELFSEVKQMKEKCGEKIHMKTILAVGELKTSENI-------YCASMTA 198 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~--~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i-------~~A~~ia 198 (214)
+.-++..-+.|||||=+| |+.+.+++.. +...+-|+++.+.|. +.+-+-=| +.+.|.+ ....+..
T Consensus 270 ve~a~~y~~~Gadel~~~-Di~~~~~~~~~~~~~~~~i~~i~~~~~----ip~~vGGG-Ir~~~d~~~~~~~~~e~~~~~ 343 (538)
T PLN02617 270 VELAGQYYKDGADEVAFL-NITGFRDFPLGDLPMLEVLRRASENVF----VPLTVGGG-IRDFTDANGRYYSSLEVASEY 343 (538)
T ss_pred HHHHHHHHHcCCCEEEEE-ECCCCcCCcccchhHHHHHHHHHhhCC----CCEEEcCC-ccccccccccccchHHHHHHH
Confidence 456777778999999665 9988766533 345566666666542 33333333 3232221 1224566
Q ss_pred HHcCCCEEEcCC
Q psy965 199 MFAGSDFIKTSG 210 (214)
Q Consensus 199 ~~aGaDFIKTST 210 (214)
.++|||.|--+|
T Consensus 344 l~~GadkV~i~s 355 (538)
T PLN02617 344 FRSGADKISIGS 355 (538)
T ss_pred HHcCCCEEEECh
Confidence 789999887766
No 389
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=32.52 E-value=1.3e+02 Score=28.23 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=44.6
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhH---HHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCC
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPE---LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSD 204 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~---v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaD 204 (214)
..+++.|++.|+|-|++. |.|. .+++. -.+-+.+++++++ +.||++-|.= +...|.|| +..|||
T Consensus 247 ~eda~~a~~~G~d~I~VS-nhGG---rqld~~~~~~~~L~ei~~~~~----~~vi~dGGIr-~g~Dv~KA----LaLGA~ 313 (361)
T cd04736 247 AEDAKRCIELGADGVILS-NHGG---RQLDDAIAPIEALAEIVAATY----KPVLIDSGIR-RGSDIVKA----LALGAN 313 (361)
T ss_pred HHHHHHHHHCCcCEEEEC-CCCc---CCCcCCccHHHHHHHHHHHhC----CeEEEeCCCC-CHHHHHHH----HHcCCC
Confidence 458999999999999987 5442 23332 2334444555443 6799999955 66777654 456888
Q ss_pred EEE
Q psy965 205 FIK 207 (214)
Q Consensus 205 FIK 207 (214)
+|=
T Consensus 314 aV~ 316 (361)
T cd04736 314 AVL 316 (361)
T ss_pred EEE
Confidence 874
No 390
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=32.47 E-value=1.2e+02 Score=29.46 Aligned_cols=109 Identities=11% Similarity=-0.049 Sum_probs=68.7
Q ss_pred hhhhcccCCCCCCCHHHHHHHHHHhhc-cCch-hhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHH
Q psy965 50 IEFIDLTTLSGDDTEAVVETLTLKAIQ-PLSE-ELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETR 127 (214)
Q Consensus 50 ~~~ID~TlL~~~~T~~~I~~lc~eA~~-~f~~-~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K 127 (214)
...|++|. .|..|.+.+.++++++.. +... .+.+..++..|..+....+.|++ ..+++ ++| |+..+...=
T Consensus 139 ~~~i~~t~-~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~-~~~vp-----I~~-H~Hnt~GlA 210 (467)
T PRK14041 139 QGAISYTV-SPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKK-KFGVP-----VEV-HSHCTTGLA 210 (467)
T ss_pred EEEEEecc-CCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHH-hcCCc-----eEE-EecCCCCcH
Confidence 34455554 478889999999988875 2111 11122345589888888888874 22333 344 455555666
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHH
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKE 168 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~ 168 (214)
++-+-.|++.||+-||.-++- +-.|--+.-.+++....+
T Consensus 211 ~AN~laAieaGad~vD~sv~~--~g~gagN~atE~lv~~L~ 249 (467)
T PRK14041 211 SLAYLAAVEAGADMFDTAISP--FSMGTSQPPFESMYYAFR 249 (467)
T ss_pred HHHHHHHHHhCCCEEEeeccc--cCCCCCChhHHHHHHHHH
Confidence 777888999999999999984 222333455566555443
No 391
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.17 E-value=1.5e+02 Score=26.56 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=46.5
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCE-----EEEecChhHhhcCC---hhHHHHHHHHHHHHhcCCceE
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDE-----VDIVIQRSLVLNNQ---WPELFSEVKQMKEKCGEKIHM 176 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdE-----ID~Vin~~~l~sg~---~~~v~~Ei~~v~~a~~~~~~l 176 (214)
++++++++. =.++...|..+-+...--|+.- -|+|+ ++.+. ++.+.+-++++++.+++ ..
T Consensus 116 ~~~~~i~~T------RKt~Pg~r~~~k~Av~~GGg~~HR~gL~d~vl----ikdnHi~~~g~i~~~v~~~k~~~p~--~~ 183 (273)
T PRK05848 116 SHKVKLLDT------RKTRPLLRIFEKYSVRNGGASNHRLGLDDCLM----LKDTHLKHIKDLKEFIQHARKNIPF--TA 183 (273)
T ss_pred CCCeEEEec------CCCCcchhHHHHHHHHhCCCccccCCchhhhC----cCHHHHHHHCcHHHHHHHHHHhCCC--Cc
Confidence 455554444 3455566766655555556631 12221 11111 23445556666655542 47
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 177 KTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 177 KvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
|+.+|..-+ ||.. .|.++|+|+|-
T Consensus 184 ~I~VEv~tl---eea~----~A~~~GaDiI~ 207 (273)
T PRK05848 184 KIEIECESL---EEAK----NAMNAGADIVM 207 (273)
T ss_pred eEEEEeCCH---HHHH----HHHHcCCCEEE
Confidence 899999844 6664 45689999985
No 392
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=31.93 E-value=48 Score=20.04 Aligned_cols=16 Identities=25% Similarity=0.056 Sum_probs=12.0
Q ss_pred HHHHHHHHcCCCEEEc
Q psy965 193 CASMTAMFAGSDFIKT 208 (214)
Q Consensus 193 ~A~~ia~~aGaDFIKT 208 (214)
..-+.++++|+|+|-|
T Consensus 11 ~~~~~~l~~GVDgI~T 26 (30)
T PF13653_consen 11 ASWRELLDLGVDGIMT 26 (30)
T ss_dssp HHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHcCCCEeeC
Confidence 3446789999999987
No 393
>PRK09234 fbiC FO synthase; Reviewed
Probab=31.84 E-value=2.4e+02 Score=29.54 Aligned_cols=77 Identities=16% Similarity=0.036 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEE--E-------eccCCCCHHHHH
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTI--L-------AVGELKTSENIY 192 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvI--l-------Et~~L~t~e~i~ 192 (214)
.+.+.-+.++++|.+.|++|+=||- |.=-+-+.+++.+=+++|++..++ .+++.- + -.|.+ +.|.
T Consensus 557 Ls~eeI~~~a~ea~~~G~tev~i~g--G~~p~~~~~~y~~lir~IK~~~p~-i~i~afsp~Ei~~~a~~~Gl~-~~e~-- 630 (843)
T PRK09234 557 LSLDEVADRAWEAWVAGATEVCMQG--GIHPELPGTGYADLVRAVKARVPS-MHVHAFSPMEIVNGAARLGLS-IREW-- 630 (843)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEec--CCCCCcCHHHHHHHHHHHHHhCCC-eeEEecChHHHHHHHHHcCCC-HHHH--
Confidence 4678888899999999999999982 321223566666667778776654 455432 1 12322 3332
Q ss_pred HHHHHHHHcCCCEE
Q psy965 193 CASMTAMFAGSDFI 206 (214)
Q Consensus 193 ~A~~ia~~aGaDFI 206 (214)
-+...+||.|-+
T Consensus 631 --l~~LkeAGLds~ 642 (843)
T PRK09234 631 --LTALREAGLDTI 642 (843)
T ss_pred --HHHHHHhCcCcc
Confidence 345567788766
No 394
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=31.81 E-value=1.4e+02 Score=28.19 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=40.3
Q ss_pred ChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEec-cCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 147 QRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV-GELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 147 n~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt-~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
|.+.+-+.-.+...+|+..+++..+. .-+|.-. +.- +.++-.+..+.+.++|+|+|-
T Consensus 88 N~~~~s~~g~~~~l~~i~~~k~~~~~---~pvIaSi~~~~-s~~~~~~~a~~~e~~GaD~iE 145 (385)
T PLN02495 88 NIELISDRPFETMLAEFKQLKEEYPD---RILIASIMEEY-NKDAWEEIIERVEETGVDALE 145 (385)
T ss_pred CcccccccCHHHHHHHHHHHHhhCCC---CcEEEEccCCC-CHHHHHHHHHHHHhcCCCEEE
Confidence 55555555678888999888765543 3556665 224 567777888888899999986
No 395
>smart00642 Aamy Alpha-amylase domain.
Probab=31.75 E-value=1e+02 Score=25.19 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCceEEEEEecc
Q psy965 161 SEVKQMKEKCGEKIHMKTILAVG 183 (214)
Q Consensus 161 ~Ei~~v~~a~~~~~~lKvIlEt~ 183 (214)
+|+++++++|+. .-+|||++.-
T Consensus 70 ~d~~~lv~~~h~-~Gi~vilD~V 91 (166)
T smart00642 70 EDFKELVDAAHA-RGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHHHH-CCCEEEEEEC
Confidence 789999999987 6799998753
No 396
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=31.71 E-value=2.4e+02 Score=26.41 Aligned_cols=75 Identities=11% Similarity=0.018 Sum_probs=49.5
Q ss_pred cHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcC
Q psy965 93 TVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE 172 (214)
Q Consensus 93 ~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~ 172 (214)
|=.-|.+.|+..+..+. +.| |..+.|..|..+-..-++.|.+.|.| +|+==.+=..++-..+.+|++.|+..+++
T Consensus 178 FRAaAiEQL~~w~er~g-v~v-I~~~~G~DpAaVafDAi~~Akar~~D---vvliDTAGRLhnk~nLM~EL~KI~rV~~k 252 (340)
T COG0552 178 FRAAAIEQLEVWGERLG-VPV-ISGKEGADPAAVAFDAIQAAKARGID---VVLIDTAGRLHNKKNLMDELKKIVRVIKK 252 (340)
T ss_pred HHHHHHHHHHHHHHHhC-CeE-EccCCCCCcHHHHHHHHHHHHHcCCC---EEEEeCcccccCchhHHHHHHHHHHHhcc
Confidence 33455566654333333 224 46688999999877777777777655 55433333445778899999999999864
No 397
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=31.57 E-value=3.5e+02 Score=23.55 Aligned_cols=165 Identities=11% Similarity=-0.001 Sum_probs=90.0
Q ss_pred CchhhhhcccCHHHHHHHHHHhhhhhhhhhHhHHHHHHHhhhhhc-ccCCCCCCCHHHHHHHHHHhhccCchhhhccccc
Q psy965 10 DFKWVHDIQINTKYLEDLTRQFEAVDLSRIKNKKSLLLKIIEFID-LTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLR 88 (214)
Q Consensus 10 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ID-~TlL~~~~T~~~I~~lc~eA~~~f~~~~~~~~~c 88 (214)
+.+++.+|.=|.+-+.+. . .+ .. .+.++++.+.++ ..-++-...-.+.++++++|+.... .+. .-.+
T Consensus 18 ~~~~i~GvTTNPsll~k~-----g---~~-~~-~~~~~~i~~~i~~~~~vs~ev~~~~~~~mi~eA~~l~~-~~~-~nv~ 85 (222)
T PRK12656 18 EILPLAGVTSNPSIAKKE-----G---DI-DF-FERIREVREIIGDEASIHVQVVAQDYEGILKDAHEIRR-QCG-DDVY 85 (222)
T ss_pred hcCCcceEeCCHHHHHhc-----C---CC-CH-HHHHHHHHHHhCCCCcEEEEEEECCHHHHHHHHHHHHH-HhC-CCEE
Confidence 345677777777766541 0 00 11 244556666664 2224444445556666777764210 000 1123
Q ss_pred c--C--cccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHH
Q psy965 89 G--F--VSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVK 164 (214)
Q Consensus 89 v--~--P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~ 164 (214)
+ | +.-++.+ +.|.. .++++... .=|- +.++..|.+.||+-|--=+||-.=..+|-..+..+|.
T Consensus 86 VKIP~T~~Gl~Ai-~~L~~--~Gi~vn~T-~ifs---------~~Qa~~Aa~aGa~yvsPyvgRi~d~g~D~~~~i~~i~ 152 (222)
T PRK12656 86 IKVPVTPAGLAAI-KTLKA--EGYHITAT-AIYT---------VFQGLLAIEAGADYLAPYYNRMENLNIDSNAVIGQLA 152 (222)
T ss_pred EEeCCCHHHHHHH-HHHHH--CCCceEEe-eeCC---------HHHHHHHHHCCCCEEecccchhhhcCCCHHHHHHHHH
Confidence 3 2 2235544 45653 45665555 2232 4577889999998766666665555566666666666
Q ss_pred HHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 165 QMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 165 ~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
.+.+.-+ ...|++-.. +.+.+++.+ +..+|+|.+-
T Consensus 153 ~~~~~~~--~~tkILaAS--~r~~~~v~~----a~~~G~d~vT 187 (222)
T PRK12656 153 EAIDREN--SDSKILAAS--FKNVAQVNK----AFALGAQAVT 187 (222)
T ss_pred HHHHhcC--CCCEEEEEe--cCCHHHHHH----HHHcCCCEEe
Confidence 6665433 346665544 336677654 4567999874
No 398
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=31.47 E-value=1.2e+02 Score=27.65 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=52.1
Q ss_pred HHHHHHHCCCCEEEEecChhHhh----cCC---------------hhHHHHHHHHHHHHhcCCceEEEEEeccCCC----
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVL----NNQ---------------WPELFSEVKQMKEKCGEKIHMKTILAVGELK---- 186 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~----sg~---------------~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~---- 186 (214)
-|+.|.++|.|-|++=---|+|+ |.. ...+.+=|++|+++|++..++=+=|-..+..
T Consensus 154 AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~ 233 (341)
T PF00724_consen 154 AARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGI 233 (341)
T ss_dssp HHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSH
T ss_pred HHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCC
Confidence 46778899999999987776655 221 1345566788899998644444444443332
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcC
Q psy965 187 TSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 187 t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
+.++....++++..+|.||+--|
T Consensus 234 ~~~e~~~~~~~~~~~~~d~~~~~ 256 (341)
T PF00724_consen 234 TLEETIEIAKLLEELGVDFLDVS 256 (341)
T ss_dssp HSHHHHHHHHHHHHHHHTTEEEE
T ss_pred chHHHHHHHHHHHHHhhhhcccc
Confidence 23555677888888999988543
No 399
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=31.40 E-value=3.3e+02 Score=23.90 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=44.2
Q ss_pred HHHHHHHH----HHHHHCCCCEEEEecChhHhhcCChhHHH---HHHHHHHHHhcCCceEEEEEec------c---CCCC
Q psy965 124 LETRLHEI----ELLAKQKVDEVDIVIQRSLVLNNQWPELF---SEVKQMKEKCGEKIHMKTILAV------G---ELKT 187 (214)
Q Consensus 124 ~~~K~~E~----~~Ai~~GAdEID~Vin~~~l~sg~~~~v~---~Ei~~v~~a~~~~~~lKvIlEt------~---~L~t 187 (214)
.+.+.... +.+.+.|.++=|++++.+.-..+..+.-. +.++.+++. + +++.+-. | .+..
T Consensus 143 ~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~--~---~p~l~G~SrkSfig~v~~~~~ 217 (257)
T TIGR01496 143 VEEVLRFLEARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVAL--G---YPLLVGASRKSFIGALLGTPP 217 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhC--C---CcEEEEecccHHHHhhcCCCh
Confidence 44455444 44778999999999998653333343333 444444431 1 3333333 1 1322
Q ss_pred HHHH---HHHHHHHHHcCCCEEEc
Q psy965 188 SENI---YCASMTAMFAGSDFIKT 208 (214)
Q Consensus 188 ~e~i---~~A~~ia~~aGaDFIKT 208 (214)
.+.. ..++.+|.+.|+++|-|
T Consensus 218 ~~r~~~t~~~~~~a~~~Ga~iiR~ 241 (257)
T TIGR01496 218 EERLEGTLAASAYAVQKGADIVRV 241 (257)
T ss_pred hhhhHHHHHHHHHHHHcCCCEEEe
Confidence 1221 23456788999999976
No 400
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=31.29 E-value=2.3e+02 Score=26.76 Aligned_cols=74 Identities=7% Similarity=0.035 Sum_probs=47.1
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
...++.|++.|+|-||+--.-|.-+.+... ..+-+.+++++.++ .+.||..-|.= +...|.||- ..|||+|=
T Consensus 256 ~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~-t~~~L~~i~~a~~~--~~~vi~dGGIr-~g~Di~KAL----aLGA~~V~ 327 (381)
T PRK11197 256 PEDARDAVRFGADGIVVSNHGGRQLDGVLS-SARALPAIADAVKG--DITILADSGIR-NGLDVVRMI----ALGADTVL 327 (381)
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCCccc-HHHHHHHHHHHhcC--CCeEEeeCCcC-cHHHHHHHH----HcCcCcee
Confidence 458889999999999976333333333222 23555566665543 37788888855 767776653 34888875
Q ss_pred cC
Q psy965 208 TS 209 (214)
Q Consensus 208 TS 209 (214)
-+
T Consensus 328 iG 329 (381)
T PRK11197 328 LG 329 (381)
T ss_pred Eh
Confidence 43
No 401
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=31.26 E-value=3.3e+02 Score=23.12 Aligned_cols=100 Identities=15% Similarity=0.086 Sum_probs=53.7
Q ss_pred CcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHH
Q psy965 90 FVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEK 169 (214)
Q Consensus 90 ~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a 169 (214)
.|..++..++.-+ ..++|+.+. -|- .+ ...++.+++.|++-+ +++.+.+.+ ++.+ .++.+.
T Consensus 56 ~~~~~~~i~~i~~--~~~~pv~~~-GGI----~s----~~d~~~~l~~G~~~v--~ig~~~~~~--p~~~----~~i~~~ 116 (243)
T cd04731 56 RETMLDVVERVAE--EVFIPLTVG-GGI----RS----LEDARRLLRAGADKV--SINSAAVEN--PELI----REIAKR 116 (243)
T ss_pred CcccHHHHHHHHH--hCCCCEEEe-CCC----CC----HHHHHHHHHcCCceE--EECchhhhC--hHHH----HHHHHH
Confidence 4556666655433 356787777 233 22 256677777898875 567776654 3332 233333
Q ss_pred hcCC-ce------------EEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 170 CGEK-IH------------MKTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 170 ~~~~-~~------------lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
++.. .. .+|-...+.-.+..+....+..+.+.|+|||--
T Consensus 117 ~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v 168 (243)
T cd04731 117 FGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILL 168 (243)
T ss_pred cCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEE
Confidence 4321 11 223333332223333445567778899998754
No 402
>PLN02444 HMP-P synthase
Probab=31.22 E-value=1.1e+02 Score=30.77 Aligned_cols=100 Identities=13% Similarity=0.017 Sum_probs=71.6
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHh-cC-C---ceEEEE
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKC-GE-K---IHMKTI 179 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~-~~-~---~~lKvI 179 (214)
|-.+||=+= +|=.......+.-+..++.|++.|||- |++++ -.||.+.+++.|-.-...- |- + ...|+.
T Consensus 218 gl~tKVNAN-IGtS~~~s~ie~EveK~~~A~~~GADT---vMDLS--TGgdi~~iR~~Il~~spvPVGTVPIYqA~~~~~ 291 (642)
T PLN02444 218 NFLVKVNAN-IGNSAVTSSIEEEVYKLQWATMWGADT---VMDLS--TGRHIHETREWILRNSPVPVGTVPIYQALEKVD 291 (642)
T ss_pred CceeEEeee-ecCCCCCCCHHHHHHHHHHHHHcCCCe---Eeecc--CCCCHHHHHHHHHHcCCCCccCccHHHHHHHhc
Confidence 556788888 799999999999999999999999985 56766 5688888888776543211 11 0 122332
Q ss_pred EeccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 180 LAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 180 lEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
=..-.| |.|.+....+-=.+-|+||+--=.|
T Consensus 292 ~~~~~l-t~d~~~d~ieeQaeqGVDfmTIH~G 322 (642)
T PLN02444 292 GIAENL-TWEVFRETLIEQAEQGVDYFTIHAG 322 (642)
T ss_pred CChhhC-CHHHHHHHHHHHHHhCCCEEEEChh
Confidence 233457 7788888888888899999865444
No 403
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=31.05 E-value=1.7e+02 Score=28.58 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=61.7
Q ss_pred CcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCH------H---------------HHHHHHHHHHHCCCCEEEEecCh
Q psy965 90 FVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLL------E---------------TRLHEIELLAKQKVDEVDIVIQR 148 (214)
Q Consensus 90 ~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~------~---------------~K~~E~~~Ai~~GAdEID~Vin~ 148 (214)
.|.....+....+ .++.+.++ +=++|.+.. . .-..+++.|++.|||-|=+-+-.
T Consensus 246 ~~~~~~r~~~l~~---ag~d~i~i--D~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~ 320 (505)
T PLN02274 246 RESDKERLEHLVK---AGVDVVVL--DSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGS 320 (505)
T ss_pred CccHHHHHHHHHH---cCCCEEEE--eCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCC
Confidence 4666666666554 34554444 556665332 1 11357788899999976443322
Q ss_pred hHhhcC---------ChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 149 SLVLNN---------QWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 149 ~~l~sg---------~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
|..-.. +...+ .++.++++ . ..+.||.+-|.- +...+.+| +.+|||+|--.|-|
T Consensus 321 G~~~~t~~~~~~g~~~~~~i-~~~~~~~~---~-~~vpVIadGGI~-~~~di~kA----la~GA~~V~vGs~~ 383 (505)
T PLN02274 321 GSICTTQEVCAVGRGQATAV-YKVASIAA---Q-HGVPVIADGGIS-NSGHIVKA----LTLGASTVMMGSFL 383 (505)
T ss_pred CccccCccccccCCCcccHH-HHHHHHHH---h-cCCeEEEeCCCC-CHHHHHHH----HHcCCCEEEEchhh
Confidence 211111 22222 22444443 2 347899999965 77877654 56799999776655
No 404
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=31.04 E-value=2.9e+02 Score=26.36 Aligned_cols=141 Identities=14% Similarity=0.108 Sum_probs=75.8
Q ss_pred HHHHHhhhhhccc---CCCCCCCHHHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCC
Q psy965 44 SLLLKIIEFIDLT---TLSGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSG 120 (214)
Q Consensus 44 ~~l~~~~~~ID~T---lL~~~~T~~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G 120 (214)
+.+++++.-+.+. .+.++.|.++++++-+-.. .....|.....+.+.|++ ..++|...+ . |.|
T Consensus 215 ~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~~~A~l----------niv~~~~~~~~~A~~Le~-~~GiP~~~~--~-~~G 280 (457)
T TIGR01284 215 WVLKKYFERMGIQVLSTFTGNGCYDELRWMHRAKL----------NVVRCARSANYIANELEE-RYGIPRLDI--D-FFG 280 (457)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHhccccCE----------EEEEChHHHHHHHHHHHH-HhCCCeEec--c-cCC
Confidence 3344444444333 3445666666665422111 012244455556677875 457887655 4 699
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHH-H
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTA-M 199 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia-~ 199 (214)
...+..=+.++.+.. |.++ +...+.......+...+...++...+ + ||.|-++ . ....-.++.. .
T Consensus 281 ~~~T~~~l~~ia~~~--g~~~-----~~e~~i~~~~~~~~~~ld~~~~~L~G-k--rvaI~~~---~-~~~~~l~~~l~~ 346 (457)
T TIGR01284 281 FEYCAKNLRKIGEFF--GIEE-----RAERVIEEEMAKWKPELDWYKERLRG-K--KVWVWSG---G-PKLWHWPRPLED 346 (457)
T ss_pred HHHHHHHHHHHHHHh--CCch-----hHHHHHHHHHHHHHHHHHHHHHHcCC-C--EEEEECC---C-cHHHHHHHHHHH
Confidence 988888888887776 3221 22233333444444444444444444 3 6555433 2 2233444444 4
Q ss_pred HcCCCEEEcCCCC
Q psy965 200 FAGSDFIKTSGSI 212 (214)
Q Consensus 200 ~aGaDFIKTSTGf 212 (214)
+.|..-+..+|+|
T Consensus 347 ElGmevv~~~~~~ 359 (457)
T TIGR01284 347 ELGMEVVAVSTKF 359 (457)
T ss_pred hCCCEEEEEEEEe
Confidence 7999988877765
No 405
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.01 E-value=1.1e+02 Score=27.45 Aligned_cols=84 Identities=18% Similarity=0.102 Sum_probs=51.8
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCE-----EEEec---ChhHhhcCChhHHHHHHHHHHHHhcCCceE
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDE-----VDIVI---QRSLVLNNQWPELFSEVKQMKEKCGEKIHM 176 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdE-----ID~Vi---n~~~l~sg~~~~v~~Ei~~v~~a~~~~~~l 176 (214)
+++++|+.. =.++...|..|-+....-|+.- -|+|+ |--.+. | .+.+-+..+++.+++ ..
T Consensus 122 ~~~~~i~~T------RKt~Pg~R~~~k~Av~~GGg~~HR~~L~d~vlikdnHi~~~-g---~~~~~v~~aR~~~~~--~~ 189 (277)
T PRK08072 122 DSHIRICDT------RKTTPGLRMFDKYAVVCGGGFNHRFGLYDGVMIKDNHIAFC-G---SITKAVTSVREKLGH--MV 189 (277)
T ss_pred CCCeEEEec------CCCCcchhHHHHHHHHhcCCcccCCCCCceEEEchhHHHhh-C---CHHHHHHHHHHhCCC--CC
Confidence 566666555 2555567766655444455543 56663 222222 2 277788888887764 35
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 177 KTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 177 KvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
++-+|+. |.++..+| .++|+|||-
T Consensus 190 ~Igvsv~---tleea~~A----~~~gaDyI~ 213 (277)
T PRK08072 190 KIEVETE---TEEQVREA----VAAGADIIM 213 (277)
T ss_pred EEEEEeC---CHHHHHHH----HHcCCCEEE
Confidence 7888887 55776555 479999984
No 406
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=30.90 E-value=3.2e+02 Score=22.83 Aligned_cols=149 Identities=11% Similarity=0.028 Sum_probs=72.6
Q ss_pred HHHHHHhhhhhcccCC--CCCCCHHHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCC
Q psy965 43 KSLLLKIIEFIDLTTL--SGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSG 120 (214)
Q Consensus 43 ~~~l~~~~~~ID~TlL--~~~~T~~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G 120 (214)
..++.++...++..+. ..--+.++++++++..... ........-.|.++..+.+.+. . -++... ++++.|
T Consensus 62 ~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~---vvigs~~l~dp~~~~~i~~~~g---~-~~i~~s-id~~~~ 133 (234)
T cd04732 62 LELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSR---VIIGTAAVKNPELVKELLKEYG---G-ERIVVG-LDAKDG 133 (234)
T ss_pred HHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCE---EEECchHHhChHHHHHHHHHcC---C-ceEEEE-EEeeCC
Confidence 4455555555433332 2345667777776533210 0000000115666766666553 2 122222 355543
Q ss_pred C-------CCHH-HHHHHHHHHHHCCCCEEEEecChh--HhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHH
Q psy965 121 Q-------YLLE-TRLHEIELLAKQKVDEVDIVIQRS--LVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSEN 190 (214)
Q Consensus 121 ~-------~~~~-~K~~E~~~Ai~~GAdEID~Vin~~--~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~ 190 (214)
. ..+. .-..=++...+.||++|=+ .++. -...|-- .+-++++++.+ .+.+|..-|.- +.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii-~~~~~~g~~~g~~---~~~i~~i~~~~----~ipvi~~GGi~-~~~d 204 (234)
T cd04732 134 KVATKGWLETSEVSLEELAKRFEELGVKAIIY-TDISRDGTLSGPN---FELYKELAAAT----GIPVIASGGVS-SLDD 204 (234)
T ss_pred EEEECCCeeecCCCHHHHHHHHHHcCCCEEEE-EeecCCCccCCCC---HHHHHHHHHhc----CCCEEEecCCC-CHHH
Confidence 2 1111 1122345566789999844 3442 2233311 23445555443 35678877755 7777
Q ss_pred HHHHHHHHHHcCCCEEEcCCCC
Q psy965 191 IYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 191 i~~A~~ia~~aGaDFIKTSTGf 212 (214)
+.++-. .|+|.+=-+|++
T Consensus 205 i~~~~~----~Ga~gv~vg~~~ 222 (234)
T cd04732 205 IKALKE----LGVAGVIVGKAL 222 (234)
T ss_pred HHHHHH----CCCCEEEEeHHH
Confidence 765543 499988766553
No 407
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=30.52 E-value=2.9e+02 Score=24.19 Aligned_cols=181 Identities=10% Similarity=0.035 Sum_probs=94.9
Q ss_pred CCchhhhhcccCHHHHHHHHHHhhhhhhhh--h---HhHHHHHHHhhhhhcccCCC-----CCCCHHHHHHHHHHhhccC
Q psy965 9 TDFKWVHDIQINTKYLEDLTRQFEAVDLSR--I---KNKKSLLLKIIEFIDLTTLS-----GDDTEAVVETLTLKAIQPL 78 (214)
Q Consensus 9 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~ID~TlL~-----~~~T~~~I~~lc~eA~~~f 78 (214)
+++-.+-..++|.+..+ .++.+..++ |+ + +.--+|+.+-++.++ .-.. ...|+++..++......++
T Consensus 17 ~~~~~lgg~~~d~~t~~-a~~~~~~rg-r~ef~~~~e~~~~~i~~e~~~~~-~~~~vivnv~~~~~ee~~~~a~~v~~~~ 93 (231)
T TIGR00736 17 FAIVTLGGYNADRATYK-ASRDIEKRG-RKEFSFNLEEFNSYIIEQIKKAE-SRALVSVNVRFVDLEEAYDVLLTIAEHA 93 (231)
T ss_pred cCEEEECCccCCHHHHH-HHHHHHHcC-CcccCcCcccHHHHHHHHHHHHh-hcCCEEEEEecCCHHHHHHHHHHHhcCC
Confidence 44445556667766533 233444422 22 0 012577777666665 1111 1458888888888765432
Q ss_pred chhhhcccccc---------------CcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy965 79 SEELKEKVLRG---------------FVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVD 143 (214)
Q Consensus 79 ~~~~~~~~~cv---------------~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID 143 (214)
..- --.++|. .|..+....+.++ ..++||.. =.+.|... ..-+.-++.+.+.||+-|=
T Consensus 94 d~I-diN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~--~~~~PVsv---KiR~~~~~-~~~~~~a~~l~~aGad~i~ 166 (231)
T TIGR00736 94 DII-EINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK--ELNKPIFV---KIRGNCIP-LDELIDALNLVDDGFDGIH 166 (231)
T ss_pred CEE-EEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH--cCCCcEEE---EeCCCCCc-chHHHHHHHHHHcCCCEEE
Confidence 200 0012343 2333444444454 23555433 34444322 1223445667789999984
Q ss_pred EecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 144 IVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 144 ~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
+ + ....|....-.+-|+++++.+++ . -|+-+|-..+.+...+. . ++|||.|--++|
T Consensus 167 V--d--~~~~g~~~a~~~~I~~i~~~~~~-i---pIIgNGgI~s~eda~e~---l-~~GAd~VmvgR~ 222 (231)
T TIGR00736 167 V--D--AMYPGKPYADMDLLKILSEEFND-K---IIIGNNSIDDIESAKEM---L-KAGADFVSVARA 222 (231)
T ss_pred E--e--eCCCCCchhhHHHHHHHHHhcCC-C---cEEEECCcCCHHHHHHH---H-HhCCCeEEEcHh
Confidence 4 3 23344311234556677765542 2 27788888786655433 3 379999987776
No 408
>PHA02737 hypothetical protein; Provisional
Probab=30.04 E-value=16 Score=26.68 Aligned_cols=35 Identities=14% Similarity=-0.049 Sum_probs=23.0
Q ss_pred cccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHH
Q psy965 85 KVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRL 128 (214)
Q Consensus 85 ~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~ 128 (214)
.++||+-+|+-.-.. ++-+ ++ +.||.|..|..+|-
T Consensus 27 dYvCVP~sWIi~r~~------td~k--v~-VaYP~~Edp~~Tr~ 61 (72)
T PHA02737 27 DYVCVPDSWIIRRKA------TDQK--SI-VAYFEGEDPFVTKD 61 (72)
T ss_pred CEEEeCceeEEEEec------cCce--EE-EEccCCCCchhhHH
Confidence 367999999875432 2222 23 58999999866553
No 409
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=29.99 E-value=3e+02 Score=23.02 Aligned_cols=69 Identities=9% Similarity=0.040 Sum_probs=36.7
Q ss_pred HHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCC
Q psy965 131 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 131 ~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTST 210 (214)
++..-+.|++++-++ ++...+.|.. .-.+.++.+++.++ +.+++--| ..+.+++.++. ++|+|.|=.+|
T Consensus 36 a~~~~~~g~~~i~v~-dld~~~~g~~-~~~~~i~~i~~~~~----~pv~~~GG-I~~~ed~~~~~----~~Ga~~vilg~ 104 (233)
T PRK00748 36 AKAWEDQGAKWLHLV-DLDGAKAGKP-VNLELIEAIVKAVD----IPVQVGGG-IRSLETVEALL----DAGVSRVIIGT 104 (233)
T ss_pred HHHHHHcCCCEEEEE-eCCccccCCc-ccHHHHHHHHHHCC----CCEEEcCC-cCCHHHHHHHH----HcCCCEEEECc
Confidence 444456799998665 6666655522 22344444444332 34555444 44656654433 35777765443
No 410
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=29.75 E-value=3.7e+02 Score=23.27 Aligned_cols=86 Identities=14% Similarity=0.031 Sum_probs=46.0
Q ss_pred HHHHHHhhhh-hcccCCCCCCCHHHHHHHHHHhhcc-CchhhhccccccCc-ccHHHHHHhhhcCCCCCCeEEEecCCCC
Q psy965 43 KSLLLKIIEF-IDLTTLSGDDTEAVVETLTLKAIQP-LSEELKEKVLRGFV-STVWHGSDNLKTKLVYQPCLSQPAGFPS 119 (214)
Q Consensus 43 ~~~l~~~~~~-ID~TlL~~~~T~~~I~~lc~eA~~~-f~~~~~~~~~cv~P-~~V~~a~~~L~~~gs~v~vatV~igFP~ 119 (214)
-.|+.+++.. .|.-+.+.++|. ++.+.++.-++. .+ ...-.+| +-+......|.. -.-|-+=||--||.
T Consensus 75 ~~~i~~~~~~gad~I~~H~Ea~~-~~~~~l~~Ir~~g~k-----~GlalnP~T~~~~i~~~l~~-vD~VlvMtV~PGf~- 146 (223)
T PRK08745 75 DRIVPDFADAGATTISFHPEASR-HVHRTIQLIKSHGCQ-----AGLVLNPATPVDILDWVLPE-LDLVLVMSVNPGFG- 146 (223)
T ss_pred HHHHHHHHHhCCCEEEEcccCcc-cHHHHHHHHHHCCCc-----eeEEeCCCCCHHHHHHHHhh-cCEEEEEEECCCCC-
Confidence 4566665554 677777777663 455565555532 21 1112233 455555555552 23456666655665
Q ss_pred CCCCHH---HHHHHHHHHHH
Q psy965 120 GQYLLE---TRLHEIELLAK 136 (214)
Q Consensus 120 G~~~~~---~K~~E~~~Ai~ 136 (214)
||...+ .|+.+.+..+.
T Consensus 147 GQ~fi~~~l~KI~~l~~~~~ 166 (223)
T PRK08745 147 GQAFIPSALDKLRAIRKKID 166 (223)
T ss_pred CccccHHHHHHHHHHHHHHH
Confidence 555544 56666666654
No 411
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=29.70 E-value=2.1e+02 Score=23.33 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=11.1
Q ss_pred HHHHHHHHCCCCEEEEe
Q psy965 129 HEIELLAKQKVDEVDIV 145 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~V 145 (214)
.+++.+.+.|||-|-+.
T Consensus 15 ~~~~~~~~~g~d~i~~~ 31 (210)
T TIGR01163 15 EEVKAVEEAGADWIHVD 31 (210)
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 45666666777776664
No 412
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=29.45 E-value=4.7e+02 Score=24.35 Aligned_cols=128 Identities=13% Similarity=0.085 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCC-CCCCCHHHHHHHHHHHHHCCCCEEE
Q psy965 65 AVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFP-SGQYLLETRLHEIELLAKQKVDEVD 143 (214)
Q Consensus 65 ~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP-~G~~~~~~K~~E~~~Ai~~GAdEID 143 (214)
.-++++++|..- . ....+||.||..-. +...+|.+. | -=..+.+.=+.|++++++.|..-+-
T Consensus 7 ~~~R~lv~Et~L--~-----~~dlI~PlFV~eg~------~~~~~I~sm----PG~~r~s~d~l~~~~~~~~~~Gi~~v~ 69 (320)
T cd04824 7 PLLRQWQSERTL--T-----KSNLIYPIFITDNP------DAKQPIDSL----PGINRYGVNRLEEFLRPLVAKGLRSVI 69 (320)
T ss_pred HHHHHHHhcCCC--C-----HHHceeeEEEecCC------CCccccCCC----CCceeeCHHHHHHHHHHHHHCCCCEEE
Confidence 456777776651 1 23488999996422 223344444 4 2234567778899999999999887
Q ss_pred EecChh-HhhcCC--------hhHHHHHHHHHHHHhcC--------------CceEEEEEeccCCCCHHHHHHHHHHH--
Q psy965 144 IVIQRS-LVLNNQ--------WPELFSEVKQMKEKCGE--------------KIHMKTILAVGELKTSENIYCASMTA-- 198 (214)
Q Consensus 144 ~Vin~~-~l~sg~--------~~~v~~Ei~~v~~a~~~--------------~~~lKvIlEt~~L~t~e~i~~A~~ia-- 198 (214)
+-.-.. ..|+.. -..+.+=|+++++..++ +.|.-++=+.|...+++-+...++.|
T Consensus 70 LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~g~vdND~Tl~~L~k~Avs 149 (320)
T cd04824 70 LFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLIACDVCLCEYTSHGHCGILYEDGTINNEASVKRLAEVALA 149 (320)
T ss_pred EeCCCccccCCcCccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeECCCCcCcCHHHHHHHHHHHHH
Confidence 654421 234333 23567778888877543 01233333467777777777666655
Q ss_pred -HHcCCCEEEcC
Q psy965 199 -MFAGSDFIKTS 209 (214)
Q Consensus 199 -~~aGaDFIKTS 209 (214)
.+||||+|--|
T Consensus 150 ~A~AGADiVAPS 161 (320)
T cd04824 150 YAKAGAHIVAPS 161 (320)
T ss_pred HHHhCCCEEecc
Confidence 47999999765
No 413
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=29.39 E-value=4.6e+02 Score=24.27 Aligned_cols=149 Identities=14% Similarity=0.091 Sum_probs=81.8
Q ss_pred HHHHHHhhhhhcccCCCCCCCHHHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCC
Q psy965 43 KSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQY 122 (214)
Q Consensus 43 ~~~l~~~~~~ID~TlL~~~~T~~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~ 122 (214)
..||.+...-..+..+..-..+.+++-+.+- ..-+. + ....|.+..++..+.+ ++.+ +.+=.|.+
T Consensus 146 L~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~-vd~lq--I-gAr~~~N~~LL~~va~------~~kP-----ViLk~G~~ 210 (335)
T PRK08673 146 LKLLAEAREETGLPIVTEVMDPRDVELVAEY-VDILQ--I-GARNMQNFDLLKEVGK------TNKP-----VLLKRGMS 210 (335)
T ss_pred HHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-CCeEE--E-CcccccCHHHHHHHHc------CCCc-----EEEeCCCC
Confidence 4456565656666666655666666655443 21000 0 0122555555554442 3443 35557777
Q ss_pred -CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCC-CHHHHHHHHHHHHH
Q psy965 123 -LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELK-TSENIYCASMTAMF 200 (214)
Q Consensus 123 -~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~-t~e~i~~A~~ia~~ 200 (214)
+.+.=+.-++...+.|-..+ +.+.+|----..|....-+++.+...-.. -++.||...+--. ..+-+.-++..|+.
T Consensus 211 ~ti~E~l~A~e~i~~~GN~~v-iL~erG~~tf~~~~~~~ldl~ai~~lk~~-~~lPVi~d~sH~~G~~~~v~~~a~AAvA 288 (335)
T PRK08673 211 ATIEEWLMAAEYILAEGNPNV-ILCERGIRTFETATRNTLDLSAVPVIKKL-THLPVIVDPSHATGKRDLVEPLALAAVA 288 (335)
T ss_pred CCHHHHHHHHHHHHHcCCCeE-EEEECCCCCCCCcChhhhhHHHHHHHHHh-cCCCEEEeCCCCCccccchHHHHHHHHH
Confidence 66666666666667788765 44554320001333344455555433222 3578888655443 34667778999999
Q ss_pred cCCC--EEEc
Q psy965 201 AGSD--FIKT 208 (214)
Q Consensus 201 aGaD--FIKT 208 (214)
+||| ||-+
T Consensus 289 ~GAdGliIE~ 298 (335)
T PRK08673 289 AGADGLIVEV 298 (335)
T ss_pred hCCCEEEEEe
Confidence 9999 8753
No 414
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=29.38 E-value=3.2e+02 Score=22.89 Aligned_cols=70 Identities=9% Similarity=0.136 Sum_probs=41.2
Q ss_pred HHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
-++..-+.||+|+=+ ++....+.|... -.+-|+.+++.+. +.+.+--| ..+.+++.++ .++|+|.|=.+
T Consensus 33 ~a~~~~~~g~~~l~v-~dl~~~~~g~~~-~~~~i~~i~~~~~----~pi~~ggG-I~~~ed~~~~----~~~Ga~~vvlg 101 (230)
T TIGR00007 33 AAKKWEEEGAERIHV-VDLDGAKEGGPV-NLPVIKKIVRETG----VPVQVGGG-IRSLEDVEKL----LDLGVDRVIIG 101 (230)
T ss_pred HHHHHHHcCCCEEEE-EeCCccccCCCC-cHHHHHHHHHhcC----CCEEEeCC-cCCHHHHHHH----HHcCCCEEEEC
Confidence 455557889999966 588887766431 1234455554442 34555444 4466666443 34788877665
Q ss_pred C
Q psy965 210 G 210 (214)
Q Consensus 210 T 210 (214)
|
T Consensus 102 s 102 (230)
T TIGR00007 102 T 102 (230)
T ss_pred h
Confidence 5
No 415
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=28.69 E-value=3e+02 Score=25.42 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=49.1
Q ss_pred HHHHHHHHHCCCCEEEEecChhHhhcCChh--HHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCE
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLVLNNQWP--ELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDF 205 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~--~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDF 205 (214)
..+++.|.+.|+|-|++.=.-|....+... ....|+.+.....++ .+-||.--| +.+-..+.|| +..|||+
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~--~~~vi~~GG-Ir~G~Dv~ka----laLGA~a 296 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFD--KIEVYVDGG-VRRGTDVLKA----LCLGAKA 296 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCC--CceEEEeCC-CCCHHHHHHH----HHcCCCE
Confidence 678999999999999998444444333222 223444444433333 366777777 4476667554 4569999
Q ss_pred EEcCCCC
Q psy965 206 IKTSGSI 212 (214)
Q Consensus 206 IKTSTGf 212 (214)
|--+|.|
T Consensus 297 V~iG~~~ 303 (344)
T cd02922 297 VGLGRPF 303 (344)
T ss_pred EEECHHH
Confidence 8776643
No 416
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=28.66 E-value=1.5e+02 Score=26.37 Aligned_cols=87 Identities=11% Similarity=0.116 Sum_probs=48.3
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCE-----EEEec---ChhHhhcCChhHHHHHHHHHHHHhcCCceE
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDE-----VDIVI---QRSLVLNNQWPELFSEVKQMKEKCGEKIHM 176 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdE-----ID~Vi---n~~~l~sg~~~~v~~Ei~~v~~a~~~~~~l 176 (214)
++++++++. =.++...|..|-+.+.--|++- -|+|+ |--++ .|..+. .+-+..+++.+++ .
T Consensus 116 ~~~~~i~~T------RKt~Pg~r~~~k~Av~~GGg~~HR~gL~d~vlikdnH~~~-~g~~~~-~~av~~~R~~~~~---~ 184 (272)
T cd01573 116 NPDIVVATT------RKAFPGTRKLALKAILAGGAVPHRLGLSETILVFAEHRAF-LGGPEP-LKALARLRATAPE---K 184 (272)
T ss_pred CCCcEEEEe------CCCCccchHHHHHHHHhcCccccccCCCcceEeehhHHHH-hCCchH-HHHHHHHHHhCCC---C
Confidence 566666554 3444556666665555555543 23332 22112 222222 4556666665543 4
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 177 KTILAVGELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 177 KvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
|+.+|+. |.++..+| .++|+|||.-.
T Consensus 185 ~IgVev~---t~eea~~A----~~~gaD~I~ld 210 (272)
T cd01573 185 KIVVEVD---SLEEALAA----AEAGADILQLD 210 (272)
T ss_pred eEEEEcC---CHHHHHHH----HHcCCCEEEEC
Confidence 7888876 55776554 47999999854
No 417
>PRK05927 hypothetical protein; Provisional
Probab=28.14 E-value=3.6e+02 Score=24.87 Aligned_cols=50 Identities=8% Similarity=-0.091 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcC
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE 172 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~ 172 (214)
..+.+.-++.++++.+.|++|+=++ =|.=-+-.++++.+=++.|++..++
T Consensus 75 ~ls~eei~~~a~~~~~~G~~~i~i~--gG~~p~~~~e~~~~~i~~ik~~~p~ 124 (350)
T PRK05927 75 LLSFDEFRSLMQRYVSAGVKTVLLQ--GGVHPQLGIDYLEELVRITVKEFPS 124 (350)
T ss_pred ccCHHHHHHHHHHHHHCCCCEEEEe--CCCCCCCCHHHHHHHHHHHHHHCCC
Confidence 3467788889999999999998765 2221223577777888888876544
No 418
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=28.12 E-value=2e+02 Score=26.36 Aligned_cols=86 Identities=20% Similarity=0.177 Sum_probs=51.7
Q ss_pred CcccHHHHHHhhhcCCCCCCeEEEe-cCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHH
Q psy965 90 FVSTVWHGSDNLKTKLVYQPCLSQP-AGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKE 168 (214)
Q Consensus 90 ~P~~V~~a~~~L~~~gs~v~vatV~-igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~ 168 (214)
.|..|...++. .++||..-. +|| ..|++...+.|+|-|| -+..+.. ..+.+..++.
T Consensus 62 ~p~~I~aIk~~-----V~iPVigk~Righ----------~~Ea~~L~~~GvDiID----~Te~lrp----ad~~~~~~K~ 118 (293)
T PRK04180 62 DPKMIEEIMDA-----VSIPVMAKARIGH----------FVEAQILEALGVDYID----ESEVLTP----ADEEYHIDKW 118 (293)
T ss_pred CHHHHHHHHHh-----CCCCeEEeehhhH----------HHHHHHHHHcCCCEEe----ccCCCCc----hHHHHHHHHH
Confidence 67777755543 467766541 344 8899999999999998 2223332 2233444443
Q ss_pred HhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 169 KCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 169 a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
. .++.+= +.-.|.+|-. -++..|+|||-|-
T Consensus 119 ~------f~~~fm-ad~~~l~EAl----rai~~GadmI~Tt 148 (293)
T PRK04180 119 D------FTVPFV-CGARNLGEAL----RRIAEGAAMIRTK 148 (293)
T ss_pred H------cCCCEE-ccCCCHHHHH----HHHHCCCCeeecc
Confidence 2 233332 3344656543 4678899999986
No 419
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=28.12 E-value=2.5e+02 Score=25.95 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=46.1
Q ss_pred HHHHHHHHHCCCCEEEEecChhHh---------hcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHH
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSLV---------LNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTA 198 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~l---------~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia 198 (214)
..+++.+.+.|||-|++-+--|.. ...+|+. .-+..++++++ +.||-+-| ..+...+.||-
T Consensus 151 ~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l--~ai~~~~~~~~----ipVIAdGG-I~~~~Di~KaL--- 220 (326)
T PRK05458 151 PEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQL--AALRWCAKAAR----KPIIADGG-IRTHGDIAKSI--- 220 (326)
T ss_pred HHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHH--HHHHHHHHHcC----CCEEEeCC-CCCHHHHHHHH---
Confidence 458999999999998866433322 2334522 22444444432 45676666 54888887653
Q ss_pred HHcCCCEEEcCCCC
Q psy965 199 MFAGSDFIKTSGSI 212 (214)
Q Consensus 199 ~~aGaDFIKTSTGf 212 (214)
..|||+|=-++.|
T Consensus 221 -a~GA~aV~vG~~~ 233 (326)
T PRK05458 221 -RFGATMVMIGSLF 233 (326)
T ss_pred -HhCCCEEEechhh
Confidence 4499998766554
No 420
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=28.08 E-value=1.4e+02 Score=26.55 Aligned_cols=77 Identities=21% Similarity=0.082 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCE--------EEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHH
Q psy965 119 SGQYLLETRLHEIELLAKQKVDE--------VDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSEN 190 (214)
Q Consensus 119 ~G~~~~~~K~~E~~~Ai~~GAdE--------ID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~ 190 (214)
.=.++...|..|-+...--|++- +=+.=|.-.+ .|+ +..-+..+++.+++ ..|+.+|+. |.||
T Consensus 120 TRKt~Pg~r~l~k~Av~~GGg~~HR~~L~d~ilikdnHi~~-~G~---~~~av~~~r~~~~~--~~~Igvev~---t~ee 190 (265)
T TIGR00078 120 TRKTTPGLRLLEKYAVRVGGGDNHRLGLSDAVMIKDNHIAA-AGS---IEKAVKRARAAAPF--ALKIEVEVE---SLEE 190 (265)
T ss_pred cCCCChhhhHHHHHHHHhcCCcccCCCcccceeeeccHHHH-hCC---HHHHHHHHHHhCCC--CCeEEEEeC---CHHH
Confidence 45666677776655555555443 2222233222 243 45567777776764 367889987 5477
Q ss_pred HHHHHHHHHHcCCCEEEc
Q psy965 191 IYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 191 i~~A~~ia~~aGaDFIKT 208 (214)
..+| .++|+|||--
T Consensus 191 a~~A----~~~gaDyI~l 204 (265)
T TIGR00078 191 AEEA----AEAGADIIML 204 (265)
T ss_pred HHHH----HHcCCCEEEE
Confidence 6544 5799999954
No 421
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.02 E-value=3.2e+02 Score=23.28 Aligned_cols=21 Identities=24% Similarity=-0.009 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHcCCCEEEcC
Q psy965 189 ENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 189 e~i~~A~~ia~~aGaDFIKTS 209 (214)
+...++.++|...|+++|...
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~ 114 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLA 114 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEC
Confidence 335677778888888888764
No 422
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.70 E-value=3e+02 Score=23.59 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=42.1
Q ss_pred HHHHHHHCCCCEEEEecChhHh-hc-CChhHHHHHHHHHHHHhcCCceEEEE-Eecc-----CCC--C-------HHHHH
Q psy965 130 EIELLAKQKVDEVDIVIQRSLV-LN-NQWPELFSEVKQMKEKCGEKIHMKTI-LAVG-----ELK--T-------SENIY 192 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l-~s-g~~~~v~~Ei~~v~~a~~~~~~lKvI-lEt~-----~L~--t-------~e~i~ 192 (214)
.++.+.+.|.+-|++.+.-... .. .+| -..++.++++.+.+ .-+++. +..+ .+. + .+.+.
T Consensus 26 ~~~~~~~~G~~~iEl~~~~~~~~~~~~~~--~~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 102 (283)
T PRK13209 26 KLAIAKTAGFDFVEMSVDESDERLARLDW--SREQRLALVNALVE-TGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMR 102 (283)
T ss_pred HHHHHHHcCCCeEEEecCccccchhccCC--CHHHHHHHHHHHHH-cCCceeEEecccccccCCCCCCHHHHHHHHHHHH
Confidence 3455668899999986542111 11 122 23455555555533 223331 1111 011 1 12356
Q ss_pred HHHHHHHHcCCCEEEcCCC
Q psy965 193 CASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 193 ~A~~ia~~aGaDFIKTSTG 211 (214)
++.+.|.+.|+.+|...++
T Consensus 103 ~~i~~a~~lG~~~i~~~~~ 121 (283)
T PRK13209 103 KAIQLAQDLGIRVIQLAGY 121 (283)
T ss_pred HHHHHHHHcCCCEEEECCc
Confidence 7888999999999987654
No 423
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=27.62 E-value=4.6e+02 Score=24.28 Aligned_cols=102 Identities=11% Similarity=-0.065 Sum_probs=63.4
Q ss_pred CcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHH
Q psy965 90 FVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEK 169 (214)
Q Consensus 90 ~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a 169 (214)
.|+.. .+.+.|++ ..+++...+ +||.|...++.=+.++.+... ..+ .........+.+.+...+..
T Consensus 208 ~~~~~-~~A~~Le~-r~giP~~~~--~~P~G~~~t~~~l~~la~~~g--~~~--------~~i~~e~~~~~~~l~~~~~~ 273 (396)
T cd01979 208 QPFLS-RTATTLMR-RRKCKLLSA--PFPIGPDGTRAWLEAICSAFG--IFP--------SVLAEREARAWRALEPYLDL 273 (396)
T ss_pred ChhHH-HHHHHHHH-hcCCCcccC--CcCcChHHHHHHHHHHHHHhC--CCh--------hHHHHHHHHHHHHHHHHHHh
Confidence 56554 45566764 356664444 899999999999988877764 211 12222344555556555554
Q ss_pred hcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 170 CGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 170 ~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
..+ + ||.+-.+ . ....-.++...+.|.+=+..+|.|
T Consensus 274 l~G-k--rv~i~g~---~-~~~~~la~~L~elGm~vv~~~t~~ 309 (396)
T cd01979 274 LRG-K--SIFFMGD---N-LLEIPLARFLTRCGMIVVEVGTPY 309 (396)
T ss_pred hcC-C--EEEEECC---c-hHHHHHHHHHHHCCCEEEeeCCCc
Confidence 444 3 6666443 1 234456677778999998888865
No 424
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=27.42 E-value=1.4e+02 Score=25.44 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 189 ENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 189 e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
+.+.++.+.|...|+.+|-+.+|+
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~ 108 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGK 108 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCC
Confidence 446788889999999999887764
No 425
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.08 E-value=4.5e+02 Score=23.37 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=56.9
Q ss_pred cCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEecc-CCCCHHHHH
Q psy965 115 AGFPSGQY-LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVG-ELKTSENIY 192 (214)
Q Consensus 115 igFP~G~~-~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~-~L~t~e~i~ 192 (214)
|+|=.|+. +.+.=..-++.....|-..+ +++-+|.---.+|....=+++.+...-.. .++.|++..+ -.+..+.+.
T Consensus 137 V~lk~G~~~s~~e~~~A~e~i~~~Gn~~i-~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~-~~~pV~~D~sHs~G~~~~v~ 214 (266)
T PRK13398 137 ILLKRGMSATLEEWLYAAEYIMSEGNENV-VLCERGIRTFETYTRNTLDLAAVAVIKEL-SHLPIIVDPSHATGRRELVI 214 (266)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCeE-EEEECCCCCCCCCCHHHHHHHHHHHHHhc-cCCCEEEeCCCcccchhhHH
Confidence 46778877 66666655666666788766 44566531012454444455555433222 2577999544 344457788
Q ss_pred HHHHHHHHcCCC--EEEc
Q psy965 193 CASMTAMFAGSD--FIKT 208 (214)
Q Consensus 193 ~A~~ia~~aGaD--FIKT 208 (214)
.++..|+.+||| ||-+
T Consensus 215 ~~~~aAva~Ga~Gl~iE~ 232 (266)
T PRK13398 215 PMAKAAIAAGADGLMIEV 232 (266)
T ss_pred HHHHHHHHcCCCEEEEec
Confidence 899999999999 8753
No 426
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=27.05 E-value=3.4e+02 Score=21.98 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
..++.+++.|++=+ .+. .++.+..+.++.+.++++.|+. ...++++.. . .++|.+.|+|.|-
T Consensus 17 ~~~~~~~~~g~~~v--~lR---~~~~~~~~~~~~~~~l~~~~~~-~~~~l~i~~-------~----~~la~~~g~~GvH 78 (196)
T TIGR00693 17 NRVEAALKGGVTLV--QLR---DKGSNTRERLALAEKLQELCRR-YGVPFIVND-------R----VDLALALGADGVH 78 (196)
T ss_pred HHHHHHHhcCCCEE--EEe---cCCCCHHHHHHHHHHHHHHHHH-hCCeEEEEC-------H----HHHHHHcCCCEEe
Confidence 34677899997643 222 3455677788888888888865 457788732 1 3566777877553
No 427
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=27.04 E-value=6e+02 Score=24.83 Aligned_cols=124 Identities=8% Similarity=0.001 Sum_probs=71.6
Q ss_pred CCCCCHHHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCC
Q psy965 59 SGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQK 138 (214)
Q Consensus 59 ~~~~T~~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~G 138 (214)
.+..|.++++++-+-.. .....|.....+.+.|++ ..+++... .++|.|...++.=+.++.+....-
T Consensus 272 ~ggttleei~~a~~A~~----------~ivl~~~~~~~~a~~l~~-~~g~p~~~--~~~PiGi~~Td~fL~~la~~~g~~ 338 (515)
T TIGR01286 272 AGGTTLEEMKDAPNAEA----------TVLLQPYTLRKTKEYIEK-TWKQETPK--LNIPLGVKGTDEFLMKVSEISGQP 338 (515)
T ss_pred CCCCCHHHHHHhhhCcE----------EEEEchhhhHHHHHHHHH-HhCCCccc--CCCCccHHHHHHHHHHHHHHHCCC
Confidence 45788888887644332 123456666677888875 24566433 489999999998888887765432
Q ss_pred CCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 139 VDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 139 AdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
+. ..+. .....+.+.|.....-.++ -|+.|-. +.+...-.++...+.|+.-+.-+|+
T Consensus 339 ip--------~~i~-~eR~rl~dam~d~~~~l~G---KrvaI~g----dpd~~~~l~~fL~ElGmepv~v~~~ 395 (515)
T TIGR01286 339 IP--------AELT-KERGRLVDAMTDSHAWLHG---KRFAIYG----DPDFVMGLVRFVLELGCEPVHILCT 395 (515)
T ss_pred CC--------HHHH-HHHHHHHHHHHHHHHHhcC---ceEEEEC----CHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 11 1111 1122233333333222233 3666653 3456677777888999986554443
No 428
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=27.02 E-value=2.6e+02 Score=20.87 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=39.3
Q ss_pred hcccCCCCCCCHHHHHHHHHHhhccCchhhhcccccc-Ccc---cHHHHHHhhhcCCC-CCCeEEEecCCCCCCCCHHHH
Q psy965 53 IDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLRG-FVS---TVWHGSDNLKTKLV-YQPCLSQPAGFPSGQYLLETR 127 (214)
Q Consensus 53 ID~TlL~~~~T~~~I~~lc~eA~~~f~~~~~~~~~cv-~P~---~V~~a~~~L~~~gs-~v~vatV~igFP~G~~~~~~K 127 (214)
.+...|.++.+.+++.+.+.+-.-.+ ...|. ... .++...+.+++.+. +++|..- |-|.-..+
T Consensus 28 ~~V~~lg~~~~~~~l~~~~~~~~pdv------V~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG--G~~~~~~~---- 95 (119)
T cd02067 28 FEVIDLGVDVPPEEIVEAAKEEDADA------IGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG--GAIVTRDF---- 95 (119)
T ss_pred CEEEECCCCCCHHHHHHHHHHcCCCE------EEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE--CCCCChhH----
Confidence 45567788899998888876654110 01122 233 33444455554444 4554433 54433222
Q ss_pred HHHHHHHHHCCCCE
Q psy965 128 LHEIELLAKQKVDE 141 (214)
Q Consensus 128 ~~E~~~Ai~~GAdE 141 (214)
+.+.+.|+|.
T Consensus 96 ----~~~~~~G~D~ 105 (119)
T cd02067 96 ----KFLKEIGVDA 105 (119)
T ss_pred ----HHHHHcCCeE
Confidence 4677889865
No 429
>KOG2367|consensus
Probab=26.95 E-value=1.7e+02 Score=28.99 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=30.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChh
Q psy965 116 GFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRS 149 (214)
Q Consensus 116 gFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~ 149 (214)
=||.++.+++-|...++.....|.|+|.+-.+..
T Consensus 70 Qs~ga~~~~~qK~eiar~L~~~gvd~IEv~fP~a 103 (560)
T KOG2367|consen 70 QSPGAFLTTEQKLEIARQLAKLGVDIIEVGFPVA 103 (560)
T ss_pred cCCCCcCCcHHHHHHHHHHHhcCcCEEEecCccc
Confidence 4888999999999999999999999999987764
No 430
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=26.86 E-value=1.5e+02 Score=26.33 Aligned_cols=77 Identities=22% Similarity=0.126 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCE-----EEEec---ChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDE-----VDIVI---QRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENI 191 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdE-----ID~Vi---n~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i 191 (214)
=.++...|..+-+.+.--|++- -|+|+ |.- ...|+.+ .-+..+++.+++ ..|+.+|+. |.+|.
T Consensus 124 RKt~Pg~r~~~k~Av~~GGg~~hR~~L~d~ilikdnHi-~~~g~~~---~~v~~~r~~~~~--~~~I~vev~---t~eea 194 (269)
T cd01568 124 RKTTPGLRLLEKYAVRAGGGDNHRLGLSDAVLIKDNHI-AAAGGIT---EAVKRARAAAPF--EKKIEVEVE---TLEEA 194 (269)
T ss_pred CCCChhhHHHHHHHHHhCCCccccCCCcceeeecHhHH-HHhCCHH---HHHHHHHHhCCC--CCeEEEecC---CHHHH
Confidence 4555566776655555555543 13332 221 1224333 456777776663 368889987 55777
Q ss_pred HHHHHHHHHcCCCEEEcC
Q psy965 192 YCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 192 ~~A~~ia~~aGaDFIKTS 209 (214)
.+| ..+|+|||.=.
T Consensus 195 ~~A----~~~gaD~I~ld 208 (269)
T cd01568 195 EEA----LEAGADIIMLD 208 (269)
T ss_pred HHH----HHcCCCEEEEC
Confidence 655 46899999643
No 431
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=26.79 E-value=4.1e+02 Score=22.82 Aligned_cols=65 Identities=6% Similarity=-0.038 Sum_probs=37.6
Q ss_pred HHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhc------CC-------------ceEEEEEeccCCCCHHH
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCG------EK-------------IHMKTILAVGELKTSEN 190 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~------~~-------------~~lKvIlEt~~L~t~e~ 190 (214)
-++...+.||+||=+| |+.... |.-. -.+-|+++++.+. ++ -.-|+++-+..+.+.+.
T Consensus 37 ~a~~~~~~g~~~l~iv-DLd~~~-g~~~-n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l 113 (241)
T PRK14024 37 AALAWQRDGAEWIHLV-DLDAAF-GRGS-NRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALENPEW 113 (241)
T ss_pred HHHHHHHCCCCEEEEE-eccccC-CCCc-cHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHHH
Confidence 4556667999999665 665543 3222 2244444444431 00 02378888888877777
Q ss_pred HHHHHHH
Q psy965 191 IYCASMT 197 (214)
Q Consensus 191 i~~A~~i 197 (214)
+.+++..
T Consensus 114 ~~~i~~~ 120 (241)
T PRK14024 114 CARVIAE 120 (241)
T ss_pred HHHHHHH
Confidence 6666543
No 432
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.63 E-value=1.5e+02 Score=26.76 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=46.2
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCC-----CEEEEecChhHhhcCC---hhHHHHHHHHHHHHhcCCceE
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKV-----DEVDIVIQRSLVLNNQ---WPELFSEVKQMKEKCGEKIHM 176 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GA-----dEID~Vin~~~l~sg~---~~~v~~Ei~~v~~a~~~~~~l 176 (214)
++++.++.. =.++...|..|-+...-=|+ .--|+|+ +|.+. ...+..-++.+++.++ ..
T Consensus 124 ~~~~~i~~T------RKt~Pg~R~~~k~Av~~GGg~~HR~~L~d~il----ikdnHi~~~g~v~~av~~~r~~~~---~~ 190 (277)
T PRK05742 124 GTQVKLLDT------RKTLPGLRLAQKYAVTCGGCHNHRIGLYDAFL----IKENHIAACGGIAQAVAAAHRIAP---GK 190 (277)
T ss_pred CCCeEEEec------CCCCCchhHHHHHHHHhcCCccccCCCcccEE----ecHHHHHHhCCHHHHHHHHHHhCC---CC
Confidence 455555544 34445566655555554555 2345554 22221 1123344666665543 37
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 177 KTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 177 KvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
|+.+|+. |.+|..+ |.++|+|||--
T Consensus 191 ~I~VEv~---tleea~e----A~~~gaD~I~L 215 (277)
T PRK05742 191 PVEVEVE---SLDELRQ----ALAAGADIVML 215 (277)
T ss_pred eEEEEeC---CHHHHHH----HHHcCCCEEEE
Confidence 8999987 4466654 44889999953
No 433
>PLN02321 2-isopropylmalate synthase
Probab=26.57 E-value=4.2e+02 Score=26.84 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=56.4
Q ss_pred HHHHHHHHHHC--CC--CEEEEecChhHh-----hcCChhHHHHHHHHHHHHhcCC-c-eEEEEEeccCCCCHHHHHHHH
Q psy965 127 RLHEIELLAKQ--KV--DEVDIVIQRSLV-----LNNQWPELFSEVKQMKEKCGEK-I-HMKTILAVGELKTSENIYCAS 195 (214)
Q Consensus 127 K~~E~~~Ai~~--GA--dEID~Vin~~~l-----~sg~~~~v~~Ei~~v~~a~~~~-~-~lKvIlEt~~L~t~e~i~~A~ 195 (214)
+...++.|++. |+ .+|-+++..+-+ +....+++.+.+..+++.+... . .+-+=.|.+.-.+.+-+.+.+
T Consensus 167 ~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~ 246 (632)
T PLN02321 167 NKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRIL 246 (632)
T ss_pred cHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHH
Confidence 34455666665 44 389898876554 3456788888888888877641 2 344445545555788889999
Q ss_pred HHHHHcCCCEEE
Q psy965 196 MTAMFAGSDFIK 207 (214)
Q Consensus 196 ~ia~~aGaDFIK 207 (214)
+.++++|+|-|-
T Consensus 247 ~~a~~aGa~~I~ 258 (632)
T PLN02321 247 GEVIKAGATTLN 258 (632)
T ss_pred HHHHHcCCCEEE
Confidence 999999999874
No 434
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=26.34 E-value=4.6e+02 Score=23.23 Aligned_cols=93 Identities=13% Similarity=0.019 Sum_probs=57.3
Q ss_pred CCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEE-----
Q psy965 106 VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL----- 180 (214)
Q Consensus 106 s~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIl----- 180 (214)
..++|.+- + |..+++.=+..++.|.+.|||-+=++.++ +++ ..-+.+++-.+++.+++.+ +-++|
T Consensus 69 ~~~pvi~g-v----~~~~t~~~i~la~~a~~~Gad~v~v~~P~-y~~-~~~~~i~~yf~~v~~~~~~---lpv~lYn~P~ 138 (290)
T TIGR00683 69 DQIALIAQ-V----GSVNLKEAVELGKYATELGYDCLSAVTPF-YYK-FSFPEIKHYYDTIIAETGG---LNMIVYSIPF 138 (290)
T ss_pred CCCcEEEe-c----CCCCHHHHHHHHHHHHHhCCCEEEEeCCc-CCC-CCHHHHHHHHHHHHhhCCC---CCEEEEeCcc
Confidence 34555444 2 34567777889999999999988655444 444 3457788888888776532 22222
Q ss_pred eccCCCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 181 AVGELKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 181 Et~~L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
-||.--+.+.+.+.++ .-..-.||-|+|
T Consensus 139 ~tg~~l~~~~i~~L~~---~pnv~giK~s~~ 166 (290)
T TIGR00683 139 LTGVNMGIEQFGELYK---NPKVLGVKFTAG 166 (290)
T ss_pred ccccCcCHHHHHHHhc---CCCEEEEEeCCC
Confidence 2443336666655542 356777887766
No 435
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.13 E-value=1.4e+02 Score=27.09 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 159 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 159 v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+.+-++++++.++. ..|+++|.. |.+|...| +++|+|.|-
T Consensus 180 i~~ai~~~r~~~~~--~~kIeVEv~---tleea~ea----~~~gaDiI~ 219 (281)
T PRK06106 180 VREAIRRARAGVGH--LVKIEVEVD---TLDQLEEA----LELGVDAVL 219 (281)
T ss_pred HHHHHHHHHHhCCC--CCcEEEEeC---CHHHHHHH----HHcCCCEEE
Confidence 66677777776653 478999999 44666544 488999874
No 436
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=26.06 E-value=1.2e+02 Score=28.29 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccC
Q psy965 117 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGE 184 (214)
Q Consensus 117 FP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~ 184 (214)
|| |..+.+.-.+-++.|.+.|.++|=.-+.+.. ++.+...++++.+.+.|++ ..++||+..+-
T Consensus 7 Y~-~~~~~~~~~~yi~~a~~~Gf~~iFTSL~ipe---~~~~~~~~~~~~l~~~a~~-~~~~v~~Disp 69 (357)
T PF05913_consen 7 YP-GQSSFEENKAYIEKAAKYGFKRIFTSLHIPE---DDPEDYLERLKELLKLAKE-LGMEVIADISP 69 (357)
T ss_dssp -C-CCS-HHHHHHHHHHHHCTTEEEEEEEE------------HHHHHHHHHHHHHH-CT-EEEEEE-C
T ss_pred eC-CCCCHHHHHHHHHHHHHCCCCEEECCCCcCC---CCHHHHHHHHHHHHHHHHH-CCCEEEEECCH
Confidence 44 4447777777899999999999999888753 6778899999999999986 67999999873
No 437
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=25.98 E-value=3.8e+02 Score=24.05 Aligned_cols=47 Identities=13% Similarity=0.009 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHH
Q psy965 121 QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEK 169 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a 169 (214)
..+.+.-+.+++++.+.|+++|-++=- .....+.+++.+-++.+++.
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~gG--~~p~~~~~~~~~li~~Ik~~ 117 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQGG--VNPDLGLDYYEDLFRAIKAR 117 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecC--CCCCCCHHHHHHHHHHHHHH
Confidence 356777788899999999999988621 11123455666666667654
No 438
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=25.86 E-value=4.5e+02 Score=22.95 Aligned_cols=93 Identities=9% Similarity=-0.005 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCC--CHHHHHHHHHHHHHCCC
Q psy965 62 DTEAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQY--LLETRLHEIELLAKQKV 139 (214)
Q Consensus 62 ~T~~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~--~~~~K~~E~~~Ai~~GA 139 (214)
.+.+.+...|+.|... +.++. .+-|+--+...++..+ +.++||.+. | |-. +.+.=+..++++++.||
T Consensus 157 ~~~~~i~~a~~~a~e~-GAD~v---Kt~~~~~~~~l~~~~~--~~~ipV~a~--G---Gi~~~~~~~~l~~v~~~~~aGA 225 (267)
T PRK07226 157 YDPEVVAHAARVAAEL-GADIV---KTNYTGDPESFREVVE--GCPVPVVIA--G---GPKTDTDREFLEMVRDAMEAGA 225 (267)
T ss_pred ccHHHHHHHHHHHHHH-CCCEE---eeCCCCCHHHHHHHHH--hCCCCEEEE--e---CCCCCCHHHHHHHHHHHHHcCC
Confidence 4667888888888642 11111 1223333444445444 456787444 3 444 44555667888999999
Q ss_pred CEEEEecChhHhhcCChhHHHHHHHHHH
Q psy965 140 DEVDIVIQRSLVLNNQWPELFSEVKQMK 167 (214)
Q Consensus 140 dEID~Vin~~~l~sg~~~~v~~Ei~~v~ 167 (214)
+-+-+.-|+ +.+.|.....+++.++.
T Consensus 226 ~Gis~gr~i--~~~~~p~~~~~~l~~~v 251 (267)
T PRK07226 226 AGVAVGRNV--FQHEDPEAITRAISAVV 251 (267)
T ss_pred cEEehhhhh--hcCCCHHHHHHHHHHHH
Confidence 966555444 56677666666665554
No 439
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.82 E-value=1.6e+02 Score=26.61 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=50.8
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHC-CCC-----EEEEec---ChhHhhcCChhHHHHHHHHHHHHhcCCce
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQ-KVD-----EVDIVI---QRSLVLNNQWPELFSEVKQMKEKCGEKIH 175 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~-GAd-----EID~Vi---n~~~l~sg~~~~v~~Ei~~v~~a~~~~~~ 175 (214)
+++++|+.. =.++...|..| ++|+.. |+. --|+|+ |-=.+..+.++.+.+-++++++.++. .
T Consensus 123 ~~~~~i~~T------RKT~PG~R~l~-k~AV~~GGg~~HR~gLsd~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~--~ 193 (281)
T PRK06543 123 GTRARIVDT------RKTTPGLRIFE-RYAVRCGGGHNHRYSLSDAVMAKDNHLAALAAQGLDLTEALRHVRAQLGH--T 193 (281)
T ss_pred CCCCEEEeC------CCCCCcchHHH-HHHHHhcCCcCcCCCCCceEEEeHHHHHHHhCCchHHHHHHHHHHHhCCC--C
Confidence 556666655 23334455544 445554 432 456663 22222212345677888888876653 4
Q ss_pred EEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 176 MKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 176 lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
.|+.+|+.-| ++... ++++|+|-|-
T Consensus 194 ~kIeVEv~sl---ee~~e----a~~~gaDiIm 218 (281)
T PRK06543 194 THVEVEVDRL---DQIEP----VLAAGVDTIM 218 (281)
T ss_pred CcEEEEeCCH---HHHHH----HHhcCCCEEE
Confidence 7999999855 66654 4578999773
No 440
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=25.76 E-value=75 Score=28.59 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCC
Q psy965 185 LKTSENIYCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 185 L~t~e~i~~A~~ia~~aGaDFIKTST 210 (214)
+.++|.|+++-+-=++||||.|.|.|
T Consensus 42 ~~~Pe~V~~vH~~yl~AGadiI~TnT 67 (304)
T PRK09485 42 LENPELIYQVHLDYFRAGADCAITAS 67 (304)
T ss_pred ccChHHHHHHHHHHHHhCCCEEEeec
Confidence 44566677777777899999999999
No 441
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=25.55 E-value=1.6e+02 Score=26.20 Aligned_cols=76 Identities=21% Similarity=0.143 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCE-----EEEe--cChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHH
Q psy965 121 QYLLETRLHEIELLAKQKVDE-----VDIV--IQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 121 ~~~~~~K~~E~~~Ai~~GAdE-----ID~V--in~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~ 193 (214)
.++...|..+-+.+.--|++- -|++ .|=-.-..|.. ..-+..+++.+++ ..|+.+|+. |.+|..+
T Consensus 126 Kt~Pg~r~~~k~Av~~GGg~~HR~~L~d~vlikdnHi~~~g~i---~~~v~~~r~~~~~--~~~Igvev~---s~eea~~ 197 (268)
T cd01572 126 KTTPGLRLLEKYAVRCGGGDNHRFGLSDAVLIKDNHIAAAGSI---TEAVRRARAAAPF--TLKIEVEVE---TLEQLKE 197 (268)
T ss_pred CCChhhHHHHHHHHHhCCCccccCCCcceeeeehHHHHHhCCH---HHHHHHHHHhCCC--CCeEEEEEC---CHHHHHH
Confidence 444556666655555556552 2232 22111122322 4567778877764 367889987 4466654
Q ss_pred HHHHHHHcCCCEEEc
Q psy965 194 ASMTAMFAGSDFIKT 208 (214)
Q Consensus 194 A~~ia~~aGaDFIKT 208 (214)
| .++|+|||--
T Consensus 198 A----~~~gaDyI~l 208 (268)
T cd01572 198 A----LEAGADIIML 208 (268)
T ss_pred H----HHcCCCEEEE
Confidence 4 4799999954
No 442
>PRK12677 xylose isomerase; Provisional
Probab=25.40 E-value=3.8e+02 Score=25.10 Aligned_cols=22 Identities=14% Similarity=-0.067 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCCEEEcCCCC
Q psy965 191 IYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 191 i~~A~~ia~~aGaDFIKTSTGf 212 (214)
..++.++|.+.|++.|..-.|+
T Consensus 116 ~~r~IdlA~eLGa~~Vvv~~G~ 137 (384)
T PRK12677 116 VLRNIDLAAELGAKTYVMWGGR 137 (384)
T ss_pred HHHHHHHHHHhCCCEEEEeeCC
Confidence 4566789999999999887775
No 443
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=25.17 E-value=4.3e+02 Score=24.69 Aligned_cols=90 Identities=13% Similarity=0.058 Sum_probs=46.5
Q ss_pred CCCCC--CHHHHHHHHHHHHHCCCCEEEEecC----hhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccC-------
Q psy965 118 PSGQY--LLETRLHEIELLAKQKVDEVDIVIQ----RSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGE------- 184 (214)
Q Consensus 118 P~G~~--~~~~K~~E~~~Ai~~GAdEID~Vin----~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~------- 184 (214)
|+|.. +...-..-++.+.+.|++-|.+--+ ++. ...+-...+.++++++.. .-|+|..-+..
T Consensus 23 ~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~----~~~e~~~~~~~lk~~L~~-~GL~v~~v~~nl~~~~~~ 97 (382)
T TIGR02631 23 PFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGA----PPQERDQIVRRFKKALDE-TGLKVPMVTTNLFSHPVF 97 (382)
T ss_pred CCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCC----ChhHHHHHHHHHHHHHHH-hCCeEEEeeccccCCccc
Confidence 45544 2233445667788899999887521 211 111111223444444433 23554432321
Q ss_pred ----CCC-HH--------HHHHHHHHHHHcCCCEEEcCCCC
Q psy965 185 ----LKT-SE--------NIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 185 ----L~t-~e--------~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
+.+ ++ ...++.++|.+.|+..|..-.|+
T Consensus 98 ~~g~las~d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~ 138 (382)
T TIGR02631 98 KDGGFTSNDRSVRRYALRKVLRNMDLGAELGAETYVVWGGR 138 (382)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence 212 22 23456678889999998877775
No 444
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.09 E-value=3e+02 Score=21.36 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=35.4
Q ss_pred HHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHH
Q psy965 131 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASM 196 (214)
Q Consensus 131 ~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ 196 (214)
.+...+.|+++| ++..-.+..|. + +++|.+..+.... --.++.+-.+.|.+.+...+...
T Consensus 62 L~~l~~~G~~~V--~V~Pl~l~~G~--e-~~di~~~v~~~~~-~~~~i~~g~pLl~~~~d~~~v~~ 121 (127)
T cd03412 62 LAKLAADGYTEV--IVQSLHIIPGE--E-YEKLKREVDAFKK-GFKKIKLGRPLLYSPEDYEEVAA 121 (127)
T ss_pred HHHHHHCCCCEE--EEEeCeeECcH--H-HHHHHHHHHHHhC-CCceEEEccCCCCCHHHHHHHHH
Confidence 345556899996 33333445552 1 3555555554433 25688999998877666554443
No 445
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=25.07 E-value=1.9e+02 Score=25.45 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=39.6
Q ss_pred CEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 140 DEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 140 dEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
+++|+||+.+ ..+...+-+....+ ...-+++||.-+ +.++..+..+.|..+|.-.+..+
T Consensus 67 ~~~DvVIdfT-----~p~~~~~~~~~al~-----~g~~vVigttg~-~~e~~~~l~~aA~~~g~~v~~a~ 125 (266)
T TIGR00036 67 TDPDVLIDFT-----TPEGVLNHLKFALE-----HGVRLVVGTTGF-SEEDKQELADLAEKAGIAAVIAP 125 (266)
T ss_pred CCCCEEEECC-----ChHHHHHHHHHHHH-----CCCCEEEECCCC-CHHHHHHHHHHHhcCCccEEEEC
Confidence 4589998876 33444444444433 235678888767 77888888888888887777643
No 446
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=24.88 E-value=1.6e+02 Score=25.29 Aligned_cols=72 Identities=8% Similarity=-0.012 Sum_probs=46.4
Q ss_pred CcccHHHHHHhhhcCCCCCCeEEEecCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHH
Q psy965 90 FVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQ-YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMK 167 (214)
Q Consensus 90 ~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~-~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~ 167 (214)
+|..++..++.+. ..-..|+.- +. |.|. ..-..++...++|++.||+-+ |+=++-+.+.|.....++|....
T Consensus 155 ~~~~~~~ir~~~~--~~~~~v~pG-I~-~~g~~~~dq~~~~~~~~ai~~Gad~i--VvGR~I~~a~dP~~~a~~i~~~i 227 (230)
T PRK00230 155 SAQEAAAIREATG--PDFLLVTPG-IR-PAGSDAGDQKRVMTPAQAIAAGSDYI--VVGRPITQAADPAAAYEAILAEI 227 (230)
T ss_pred ChHHHHHHHhhcC--CceEEEcCC-cC-CCCCCcchHHHHhCHHHHHHcCCCEE--EECCcccCCCCHHHHHHHHHHHh
Confidence 3455666666543 222233333 56 5444 445556778999999999974 67777788888888777776644
No 447
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.86 E-value=3.5e+02 Score=25.30 Aligned_cols=70 Identities=14% Similarity=0.022 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCCCEEEEec---ChhHhhc-CChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCC
Q psy965 128 LHEIELLAKQKVDEVDIVI---QRSLVLN-NQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGS 203 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vi---n~~~l~s-g~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGa 203 (214)
..-++.+++.|+|-|=+=- +..+.-+ ++|..+.+-+++ . .++||. |-..|.+. ++-++++|+
T Consensus 144 ~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~----~----~ipVIa--G~V~t~e~----A~~l~~aGA 209 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE----L----DVPVIV--GGCVTYTT----ALHLMRTGA 209 (368)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH----C----CCCEEE--eCCCCHHH----HHHHHHcCC
Confidence 3456777889998754321 2333333 367654333332 2 255676 44556443 344557999
Q ss_pred CEEEcCCC
Q psy965 204 DFIKTSGS 211 (214)
Q Consensus 204 DFIKTSTG 211 (214)
|.|+-+-|
T Consensus 210 D~V~VG~G 217 (368)
T PRK08649 210 AGVLVGIG 217 (368)
T ss_pred CEEEECCC
Confidence 99987533
No 448
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=24.46 E-value=1.6e+02 Score=24.05 Aligned_cols=64 Identities=22% Similarity=0.231 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 127 RLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 127 K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
=+..++.+++.| +++|.=+. ++.+.+.+.+.++.+.+.|++ ..+++||-.. ..+|.+.|+|.|
T Consensus 14 ~~~~l~~~~~~g---v~~v~lR~--k~~~~~~~~~~a~~l~~~~~~-~~~~liin~~-----------~~la~~~~~dGv 76 (180)
T PF02581_consen 14 FLEQLEAALAAG---VDLVQLRE--KDLSDEELLELARRLAELCQK-YGVPLIINDR-----------VDLALELGADGV 76 (180)
T ss_dssp HHHHHHHHHHTT----SEEEEE---SSS-HHHHHHHHHHHHHHHHH-TTGCEEEES------------HHHHHHCT-SEE
T ss_pred HHHHHHHHHHCC---CcEEEEcC--CCCCccHHHHHHHHHHHHhhc-ceEEEEecCC-----------HHHHHhcCCCEE
Confidence 345577888998 44553332 455788999999999999975 4578888652 235666888877
Q ss_pred E
Q psy965 207 K 207 (214)
Q Consensus 207 K 207 (214)
-
T Consensus 77 H 77 (180)
T PF02581_consen 77 H 77 (180)
T ss_dssp E
T ss_pred E
Confidence 5
No 449
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=24.24 E-value=2.5e+02 Score=24.69 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=41.0
Q ss_pred HHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCC
Q psy965 131 IELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 131 ~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTST 210 (214)
++.+.+.|++-+=+. +. -.+|...+.+.|+. .-++.|+=..-=++.+.+...+. ...|..|+-|++
T Consensus 108 ~~~~~~aGvdgviip-Dl----------p~ee~~~~~~~~~~-~gl~~i~lv~P~T~~eri~~i~~--~~~gfiy~vs~~ 173 (256)
T TIGR00262 108 YAKCKEVGVDGVLVA-DL----------PLEESGDLVEAAKK-HGVKPIFLVAPNADDERLKQIAE--KSQGFVYLVSRA 173 (256)
T ss_pred HHHHHHcCCCEEEEC-CC----------ChHHHHHHHHHHHH-CCCcEEEEECCCCCHHHHHHHHH--hCCCCEEEEECC
Confidence 677788888776444 22 22566677777765 44676655443434555533332 234788988887
Q ss_pred CCC
Q psy965 211 SIQ 213 (214)
Q Consensus 211 Gf~ 213 (214)
|+.
T Consensus 174 G~T 176 (256)
T TIGR00262 174 GVT 176 (256)
T ss_pred CCC
Confidence 764
No 450
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=24.21 E-value=5e+02 Score=22.90 Aligned_cols=88 Identities=18% Similarity=0.176 Sum_probs=51.7
Q ss_pred CCCCCCC-CHHHHHHHHHHHHHCCCCEEEEecChh--Hh-hcCChhHHHHHHHHHHHHhcCCceEEEEEe-ccCCCCHHH
Q psy965 116 GFPSGQY-LLETRLHEIELLAKQKVDEVDIVIQRS--LV-LNNQWPELFSEVKQMKEKCGEKIHMKTILA-VGELKTSEN 190 (214)
Q Consensus 116 gFP~G~~-~~~~K~~E~~~Ai~~GAdEID~Vin~~--~l-~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlE-t~~L~t~e~ 190 (214)
.+=.|+. +.+.-..-++...+.|.+.|=+ +.+| .+ -..+.+.=.+-|..+++.. ++.|++. +--.+..+.
T Consensus 136 ilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l-~~rG~s~y~~~~~~~~dl~~i~~lk~~~----~~pV~~ds~Hs~G~r~~ 210 (260)
T TIGR01361 136 LLKRGMGNTIEEWLYAAEYILSSGNGNVIL-CERGIRTFEKATRNTLDLSAVPVLKKET----HLPIIVDPSHAAGRRDL 210 (260)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCCcEEE-EECCCCCCCCCCcCCcCHHHHHHHHHhh----CCCEEEcCCCCCCccch
Confidence 4456777 5666665666666788876433 3332 22 2222222234455555432 4678884 333444577
Q ss_pred HHHHHHHHHHcCCC--EEEc
Q psy965 191 IYCASMTAMFAGSD--FIKT 208 (214)
Q Consensus 191 i~~A~~ia~~aGaD--FIKT 208 (214)
+..++..|+..||| ||-+
T Consensus 211 ~~~~~~aAva~Ga~gl~iE~ 230 (260)
T TIGR01361 211 VIPLAKAAIAAGADGLMIEV 230 (260)
T ss_pred HHHHHHHHHHcCCCEEEEEe
Confidence 78889999999999 7753
No 451
>PLN02417 dihydrodipicolinate synthase
Probab=24.18 E-value=5e+02 Score=22.86 Aligned_cols=94 Identities=9% Similarity=-0.023 Sum_probs=58.4
Q ss_pred CCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEE-EeccC
Q psy965 106 VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTI-LAVGE 184 (214)
Q Consensus 106 s~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvI-lEt~~ 184 (214)
..++|.+-+ |...+..-+..++.|-+.|||-+=++.++ +.+ ..-+.+++-.+.+.++. + ..+-=+ --||.
T Consensus 69 ~~~pvi~gv-----~~~~t~~~i~~a~~a~~~Gadav~~~~P~-y~~-~~~~~i~~~f~~va~~~-p-i~lYn~P~~tg~ 139 (280)
T PLN02417 69 GKIKVIGNT-----GSNSTREAIHATEQGFAVGMHAALHINPY-YGK-TSQEGLIKHFETVLDMG-P-TIIYNVPGRTGQ 139 (280)
T ss_pred CCCcEEEEC-----CCccHHHHHHHHHHHHHcCCCEEEEcCCc-cCC-CCHHHHHHHHHHHHhhC-C-EEEEEChhHhCc
Confidence 456665552 56678888889999999999988666554 344 34578888888887754 2 211100 02443
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 185 LKTSENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 185 L~t~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
--+.+.+.+.+ ..-..-.||-|+|
T Consensus 140 ~l~~~~l~~l~---~~pni~giKdss~ 163 (280)
T PLN02417 140 DIPPEVIFKIA---QHPNFAGVKECTG 163 (280)
T ss_pred CCCHHHHHHHh---cCCCEEEEEeCCC
Confidence 33666665443 3356778887776
No 452
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=23.97 E-value=5.3e+02 Score=23.11 Aligned_cols=104 Identities=13% Similarity=-0.010 Sum_probs=62.3
Q ss_pred ccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhc
Q psy965 92 STVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCG 171 (214)
Q Consensus 92 ~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~ 171 (214)
.+.+.++...+ .+++||+ +-.=+|.+ ...++.|++.|.+-|- ++- ++-.+++..+.-+++++.|+
T Consensus 61 ~~~~~~~~~a~--~~~vpv~---lHlDH~~~-----~e~i~~Al~~G~tsVm--~d~---s~~~~~eni~~t~~v~~~a~ 125 (281)
T PRK06806 61 LIGPLMVAAAK--QAKVPVA---VHFDHGMT-----FEKIKEALEIGFTSVM--FDG---SHLPLEENIQKTKEIVELAK 125 (281)
T ss_pred HHHHHHHHHHH--HCCCCEE---EECCCCCC-----HHHHHHHHHcCCCEEE--EcC---CCCCHHHHHHHHHHHHHHHH
Confidence 34455555544 5678754 34556653 4578899999987643 233 34468888888899999887
Q ss_pred CCceEEEEEeccCCCC-----------HHHHHHHHHHHHHcCCCEEEcCCC
Q psy965 172 EKIHMKTILAVGELKT-----------SENIYCASMTAMFAGSDFIKTSGS 211 (214)
Q Consensus 172 ~~~~lKvIlEt~~L~t-----------~e~i~~A~~ia~~aGaDFIKTSTG 211 (214)
. .-+.|=.|.|.|+. ......|.+.+.+.|+||+=-|-|
T Consensus 126 ~-~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG 175 (281)
T PRK06806 126 Q-YGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIG 175 (281)
T ss_pred H-cCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccC
Confidence 5 22223334444430 012233344444579999988655
No 453
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=23.63 E-value=2.9e+02 Score=22.27 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=11.3
Q ss_pred HHHHHHHCCCCEEEEecChhHhh
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVL 152 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~ 152 (214)
=++.|.+.+ ||+-+++.....|
T Consensus 20 ii~~A~~~~-D~v~v~v~~np~K 41 (140)
T PRK13964 20 ILKKALKLF-DKVYVVVSINPDK 41 (140)
T ss_pred HHHHHHHhC-CEEEEEeccCCCC
Confidence 344555553 6666665544333
No 454
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=23.43 E-value=1.3e+02 Score=26.34 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 161 SEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 161 ~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+=++.+++.+++ + +++-.+--+ +--.+ -+++|.++|||++-
T Consensus 45 ~aV~~lr~~~pd-~--~IvAD~Kt~-D~G~~--e~~ma~~aGAd~~t 85 (217)
T COG0269 45 RAVRALRELFPD-K--IIVADLKTA-DAGAI--EARMAFEAGADWVT 85 (217)
T ss_pred HHHHHHHHHCCC-C--eEEeeeeec-chhHH--HHHHHHHcCCCEEE
Confidence 667888888876 2 222222222 11222 26789999999974
No 455
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=23.40 E-value=3.7e+02 Score=25.44 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=50.1
Q ss_pred HHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcC-
Q psy965 94 VWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE- 172 (214)
Q Consensus 94 V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~- 172 (214)
-..+...+++ .+++|+.+= +=| .-| -+-.|++.|++-| =||.| |.....+.+++++++|.+
T Consensus 68 ~a~al~~I~~-~~~iPlvAD-IHF-------d~~--lAl~a~~~G~~~i--RINPG-----Nig~~~~~v~~vv~~ak~~ 129 (360)
T PRK00366 68 AAAALPEIKK-QLPVPLVAD-IHF-------DYR--LALAAAEAGADAL--RINPG-----NIGKRDERVREVVEAAKDY 129 (360)
T ss_pred HHHhHHHHHH-cCCCCEEEe-cCC-------CHH--HHHHHHHhCCCEE--EECCC-----CCCchHHHHHHHHHHHHHC
Confidence 3344444443 567887766 344 233 3667899999997 67885 445666778888888864
Q ss_pred CceEEEEEeccCC
Q psy965 173 KIHMKTILAVGEL 185 (214)
Q Consensus 173 ~~~lKvIlEt~~L 185 (214)
+.++.+=+-.|-|
T Consensus 130 ~ipIRIGvN~GSL 142 (360)
T PRK00366 130 GIPIRIGVNAGSL 142 (360)
T ss_pred CCCEEEecCCccC
Confidence 4788888888877
No 456
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=23.30 E-value=1.1e+02 Score=21.99 Aligned_cols=40 Identities=28% Similarity=0.223 Sum_probs=24.2
Q ss_pred HhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChh
Q psy965 99 DNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRS 149 (214)
Q Consensus 99 ~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~ 149 (214)
+.|+. .++++.++ +.-+.|..+ .+...++ ..+||+|||..
T Consensus 24 ~~L~~--~Gi~~~~~-~~ki~~~~~------~i~~~i~--~g~id~VIn~~ 63 (90)
T smart00851 24 KFLRE--AGLPVKTL-HPKVHGGIL------AILDLIK--NGEIDLVINTL 63 (90)
T ss_pred HHHHH--CCCcceec-cCCCCCCCH------HHHHHhc--CCCeEEEEECC
Confidence 45653 46776556 566655432 2334444 46999999975
No 457
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=23.24 E-value=5e+02 Score=22.58 Aligned_cols=87 Identities=8% Similarity=-0.081 Sum_probs=50.5
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccC
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGE 184 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~ 184 (214)
|.+.+..+| |.-..+.+.-..+++.+...|||=|++=+|. +...+++.+.+=++.+++. + +++|+ |-.
T Consensus 17 g~~~p~Icv----pi~~~~~ee~~~~~~~~~~~~aDivE~RlD~--l~~~~~~~~~~~~~~l~~~-~----~p~I~-T~R 84 (229)
T PRK01261 17 GNMQPIVVE----SIFFKDIKEMKERFKTKVLSDKNLYEIRFDL--FHDHSIESEPEIISALNEM-D----IDYIF-TYR 84 (229)
T ss_pred CCCCcEEEE----EeCCCCHHHHHHHHHHhhcCCCCEEEEEeec--cCCCChHHHHHHHHHHhhc-C----CCEEE-EEc
Confidence 555555555 4455566666778888888999998887775 3334555454333444332 2 34444 322
Q ss_pred CCCHHHHHHHHHHHHHcCCCEE
Q psy965 185 LKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 185 L~t~e~i~~A~~ia~~aGaDFI 206 (214)
=.+.. +.-+.+++.++|||
T Consensus 85 ~~~~~---~~l~~a~~~~~d~v 103 (229)
T PRK01261 85 GVDAR---KYYETAIDKMPPAV 103 (229)
T ss_pred CCCHH---HHHHHHHhhCCCEE
Confidence 21222 44556666788987
No 458
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=23.09 E-value=1.6e+02 Score=25.79 Aligned_cols=144 Identities=14% Similarity=0.119 Sum_probs=80.1
Q ss_pred hhhhcccCCCCCCCHHHHHHHHHHhhcc-Cchhhhcc-ccccCcc----cHHHHHHhhhcCCCCC-CeEEEecCCCCCCC
Q psy965 50 IEFIDLTTLSGDDTEAVVETLTLKAIQP-LSEELKEK-VLRGFVS----TVWHGSDNLKTKLVYQ-PCLSQPAGFPSGQY 122 (214)
Q Consensus 50 ~~~ID~TlL~~~~T~~~I~~lc~eA~~~-f~~~~~~~-~~cv~P~----~V~~a~~~L~~~gs~v-~vatV~igFP~G~~ 122 (214)
+.+..+..|.+ .|.++|+++.=+.-.+ +-..+.++ .+.+.-. .+..+.+.|+..|.++ -+-+. --|| +..
T Consensus 27 v~i~e~G~LDg-ls~~eI~~~aP~~ge~vLvTrL~DG~~V~ls~~~v~~~lq~~i~~le~~G~d~illlCT-G~F~-~l~ 103 (221)
T PF07302_consen 27 VEIVEAGALDG-LSREEIAALAPEPGEYVLVTRLRDGTQVVLSKKKVEPRLQACIAQLEAQGYDVILLLCT-GEFP-GLT 103 (221)
T ss_pred ceEEEeccCCC-CCHHHHHHhCCCCCCceeEEEeCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEecc-CCCC-CCC
Confidence 35556666775 6889986663332221 11011111 1233222 3344445566445443 33344 3788 333
Q ss_pred CH------HHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHH
Q psy965 123 LL------ETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASM 196 (214)
Q Consensus 123 ~~------~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ 196 (214)
+. ..-+...-.++-.| .-+=++++...-.. ..-..-.. .+ ..+.+...++|.++.+++.+|++
T Consensus 104 ~~~~lleP~ril~~lV~al~~~-~~vGVivP~~eQ~~-------~~~~kW~~-l~--~~~~~a~asPy~~~~~~l~~Aa~ 172 (221)
T PF07302_consen 104 ARNPLLEPDRILPPLVAALVGG-HQVGVIVPLPEQIA-------QQAEKWQP-LG--NPVVVAAASPYEGDEEELAAAAR 172 (221)
T ss_pred CCcceeehHHhHHHHHHHhcCC-CeEEEEecCHHHHH-------HHHHHHHh-cC--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 22 22333444555555 78888877642221 11111111 22 47899999999889999999999
Q ss_pred HHHHcCCCEEE
Q psy965 197 TAMFAGSDFIK 207 (214)
Q Consensus 197 ia~~aGaDFIK 207 (214)
-..+.|+|+|-
T Consensus 173 ~L~~~gadlIv 183 (221)
T PF07302_consen 173 ELAEQGADLIV 183 (221)
T ss_pred HHHhcCCCEEE
Confidence 99999999985
No 459
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=22.99 E-value=5.2e+02 Score=22.70 Aligned_cols=82 Identities=10% Similarity=-0.046 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEE-----eccCCCCHHHHHHH
Q psy965 120 GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTIL-----AVGELKTSENIYCA 194 (214)
Q Consensus 120 G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIl-----Et~~L~t~e~i~~A 194 (214)
|...++.-+..++.|.+.|||-+=++.++ +++..+.+.+++-.+++.+ + +.+|+ -||.--+.+.+.+.
T Consensus 73 g~~~~~~ai~~a~~a~~~Gad~v~v~~P~-y~~~~~~~~i~~yf~~v~~---~---lpv~iYn~P~~tg~~l~~~~l~~L 145 (279)
T cd00953 73 GSLNLEESIELARAAKSFGIYAIASLPPY-YFPGIPEEWLIKYFTDISS---P---YPTFIYNYPKATGYDINARMAKEI 145 (279)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEeCCc-CCCCCCHHHHHHHHHHHHh---c---CCEEEEeCccccCCCCCHHHHHHH
Confidence 45778888889999999999988655554 3442245777777777776 2 33443 24432266665443
Q ss_pred HHHHHH-cCCCEEEcCCC
Q psy965 195 SMTAMF-AGSDFIKTSGS 211 (214)
Q Consensus 195 ~~ia~~-aGaDFIKTSTG 211 (214)
+.+ -..-.||=|+|
T Consensus 146 ---~~~~p~vvgiK~s~~ 160 (279)
T cd00953 146 ---KKAGGDIIGVKDTNE 160 (279)
T ss_pred ---HhcCCCEEEEEeCcc
Confidence 332 47778887776
No 460
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=22.90 E-value=78 Score=30.23 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=41.9
Q ss_pred CCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcC-Cc-eEEEEEec--cCCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 138 KVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KI-HMKTILAV--GELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 138 GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~-~~-~lKvIlEt--~~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
+..=+|+-++-.++.. +.--.-=|.-+++.++- .. .+-.||=- | | +.++..+++.-...+|.||||-=
T Consensus 109 ~irL~D~~lP~~~~~~--f~GP~fGi~G~R~~lgv~~RPL~gtiiKP~~G-l-sp~~~a~~~~~~~~GGvD~IKDD 180 (412)
T TIGR03326 109 GLRLLDFHFPAEFLRH--FKGPQFGIEGVREFLGIKDRPLLGTVPKPKVG-L-STEEHAKVAYELWSGGVDLLKDD 180 (412)
T ss_pred ceEEEEecCCHHHHhc--CCCCCCCchhHHHHhCCCCCceEEeecccccc-C-ChHHHHHHHHHHHhcCCceeecC
Confidence 5677888888887654 11111123344444431 12 23334433 4 6 67999999999999999999953
No 461
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=22.74 E-value=4.4e+02 Score=24.61 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=43.4
Q ss_pred HHHHHHHCC-CCEEEEecChh-H------hhcCCh----hHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHH
Q psy965 130 EIELLAKQK-VDEVDIVIQRS-L------VLNNQW----PELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMT 197 (214)
Q Consensus 130 E~~~Ai~~G-AdEID~Vin~~-~------l~sg~~----~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~i 197 (214)
++..+++.| +|-|++- +.+ - ....+| .....++.......+....+.||..-| +.+...+.+
T Consensus 229 ~~a~~~~~~g~D~I~Vs-G~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGG-I~~g~Dv~k---- 302 (392)
T cd02808 229 DIAAGVAAAGADFITID-GAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGG-LRTGADVAK---- 302 (392)
T ss_pred HHHHHHHHcCCCEEEEe-CCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECC-CCCHHHHHH----
Confidence 666677666 9999855 442 1 001122 223334433332222113578887666 557777764
Q ss_pred HHHcCCCEEEcCCCC
Q psy965 198 AMFAGSDFIKTSGSI 212 (214)
Q Consensus 198 a~~aGaDFIKTSTGf 212 (214)
++..|||+|..+|.|
T Consensus 303 alaLGAd~V~ig~~~ 317 (392)
T cd02808 303 ALALGADAVGIGTAA 317 (392)
T ss_pred HHHcCCCeeeechHH
Confidence 455699999988875
No 462
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=22.66 E-value=2.7e+02 Score=24.85 Aligned_cols=104 Identities=10% Similarity=0.013 Sum_probs=57.0
Q ss_pred ccc-CcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhH---hhcCChhHHHHH
Q psy965 87 LRG-FVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSL---VLNNQWPELFSE 162 (214)
Q Consensus 87 ~cv-~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~---l~sg~~~~v~~E 162 (214)
+|+ +|.-+..|.+. . -+.+.+|+- .+ =-|.+|.---+.++.+. ....-.=|+=+++- +-+.+.+-..++
T Consensus 6 vCven~~~l~~A~~~-G--AdRiELC~~-La-~GG~TPSyG~~k~a~~~--~~ipv~~MIRPRgGdFvY~~~E~~iM~~D 78 (241)
T COG3142 6 VCVENVEGLLAAQAA-G--ADRIELCDA-LA-EGGLTPSYGVIKEAVEL--SKIPVYVMIRPRGGDFVYSDDELEIMLED 78 (241)
T ss_pred eeccCHhhHHHHHHc-C--Cceeehhhc-cc-cCCCCCCHHHHHHHHhh--cCCceEEEEecCCCCcccChHHHHHHHHH
Confidence 366 45555555432 1 256787776 22 24667777667666665 22222222222220 112233456677
Q ss_pred HHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHH
Q psy965 163 VKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTA 198 (214)
Q Consensus 163 i~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia 198 (214)
|...+++--++.++-++-.-|.+ +.+.+.+....+
T Consensus 79 I~~~~~lG~~GVV~G~lt~dg~i-D~~~le~Li~aA 113 (241)
T COG3142 79 IRLARELGVQGVVLGALTADGNI-DMPRLEKLIEAA 113 (241)
T ss_pred HHHHHHcCCCcEEEeeecCCCcc-CHHHHHHHHHHc
Confidence 77777664344889999999988 555555554443
No 463
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=22.61 E-value=4.8e+02 Score=25.02 Aligned_cols=141 Identities=17% Similarity=0.137 Sum_probs=77.2
Q ss_pred HHHhhhhhccc---CCCCCCCHHHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCC
Q psy965 46 LLKIIEFIDLT---TLSGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQY 122 (214)
Q Consensus 46 l~~~~~~ID~T---lL~~~~T~~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~ 122 (214)
++++...+... .+.++.|.++++++-+-..+ ....|.....+.+.|++ ..++|...+ . |.|-.
T Consensus 225 ik~lL~~~Gi~v~~~~sg~~t~~~i~~~~~A~ln----------iv~~~~~~~~~A~~Le~-~fGiP~~~~--~-~~Gi~ 290 (466)
T TIGR01282 225 SRILLEEIGLRVVAQWSGDGTLNEMENAPKAKLN----------LIHCYRSMNYISRHMEE-KYGIPWMEY--N-FFGPT 290 (466)
T ss_pred HHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEE----------EEEChHHHHHHHHHHHH-HhCCceEeC--C-CCCHH
Confidence 44444444332 24466677777665322221 12233444456677875 467886666 4 79999
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcC
Q psy965 123 LLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAG 202 (214)
Q Consensus 123 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aG 202 (214)
.++.=+.++.+.. |- ++. -....+.......+...+...++...+ -|+.|-+|-. ....+.. .+.+.|
T Consensus 291 ~T~~~Lr~ia~~~--g~-~i~--~~~e~~I~~e~~~~~~~ld~~~~~L~G---Krv~i~~g~~-~~~~~~~---~l~ELG 358 (466)
T TIGR01282 291 KIAESLRKIAEFF--DD-EIK--EKAEEVIAKYQPAVDAVIAKYRPRLEG---KTVMLYVGGL-RPRHVIG---AFEDLG 358 (466)
T ss_pred HHHHHHHHHHHHH--Cc-hhH--HHHHHHHHHHHHHHHHHHHHHHHhcCC---CEEEEECCCC-cHHHHHH---HHHHCC
Confidence 9998888877766 32 110 001112222223344444444444444 3688887754 3344444 467899
Q ss_pred CCEEEcCCCC
Q psy965 203 SDFIKTSGSI 212 (214)
Q Consensus 203 aDFIKTSTGf 212 (214)
.+=+-|+|.|
T Consensus 359 mevv~~g~~~ 368 (466)
T TIGR01282 359 MEVIGTGYEF 368 (466)
T ss_pred CEEEEEeeec
Confidence 9999998865
No 464
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=22.58 E-value=83 Score=23.15 Aligned_cols=42 Identities=12% Similarity=-0.024 Sum_probs=25.3
Q ss_pred CCCCeEEEecCCCCCCCCHHHHHHHHHHHHHC--CCCEEEEecChh
Q psy965 106 VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQ--KVDEVDIVIQRS 149 (214)
Q Consensus 106 s~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~--GAdEID~Vin~~ 149 (214)
..+.+.-. .+||.....-..+ ..++.++.. |+.++++.++..
T Consensus 37 ~~v~i~l~-l~~p~~~~~~~l~-~~i~~al~~l~gv~~v~v~i~~~ 80 (99)
T TIGR02945 37 GHVDIQMT-LTAPNCPVAGSMP-GEVENAVRAVPGVGSVTVELVWD 80 (99)
T ss_pred CeEEEEEE-ECCCCCChHHHHH-HHHHHHHHhCCCCceEEEEEEee
Confidence 34555555 6777655443333 356666664 898888877644
No 465
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=22.55 E-value=1.8e+02 Score=23.40 Aligned_cols=61 Identities=16% Similarity=0.065 Sum_probs=36.0
Q ss_pred HhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhc
Q psy965 99 DNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCG 171 (214)
Q Consensus 99 ~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~ 171 (214)
+.|++ .+++++-.| +.=|.|.. .++...++.| |||+|||...=...+. ...+...++.+|-
T Consensus 43 ~~L~~-~~Gi~v~~v-i~~~~gg~------~~i~~~I~~g--~i~lVInt~dp~~~~~--~~~D~~~IRR~Av 103 (142)
T PRK05234 43 GLIQE-ATGLDVTRL-LSGPLGGD------QQIGALIAEG--KIDMLIFFRDPLTAQP--HDPDVKALLRLAD 103 (142)
T ss_pred HHHHh-ccCCeeEEE-EcCCCCCc------hhHHHHHHcC--ceeEEEEecCCCCCCc--ccchHHHHHHHHH
Confidence 34553 237777666 45466554 3466677777 9999999862112222 2345666776663
No 466
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=22.54 E-value=2.4e+02 Score=27.25 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=42.1
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEE
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFI 206 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFI 206 (214)
.++.+|...|||- |+=+-++++ .+++..+.+.+.. .-|-+++|+- +.+|+.+ |.++|++.|
T Consensus 123 ~QI~ea~~~GADa---vLLI~~~L~------~~~l~~l~~~a~~-lGl~~lvEvh---~~~El~~----al~~~a~ii 183 (454)
T PRK09427 123 YQIYLARYYGADA---ILLMLSVLD------DEQYRQLAAVAHS-LNMGVLTEVS---NEEELER----AIALGAKVI 183 (454)
T ss_pred HHHHHHHHcCCCc---hhHHHHhCC------HHHHHHHHHHHHH-cCCcEEEEEC---CHHHHHH----HHhCCCCEE
Confidence 4677788888875 333344443 2467777777765 6699999998 5577765 467788876
No 467
>PRK09989 hypothetical protein; Provisional
Probab=22.47 E-value=4.9e+02 Score=22.14 Aligned_cols=110 Identities=8% Similarity=0.054 Sum_probs=57.1
Q ss_pred CcccHHHHHHhhhcCCCCCCeEEEecC---CCCCC-----CC--HHHHHHHHHH----HHHCCCCEEEEecChhHhhcC-
Q psy965 90 FVSTVWHGSDNLKTKLVYQPCLSQPAG---FPSGQ-----YL--LETRLHEIEL----LAKQKVDEVDIVIQRSLVLNN- 154 (214)
Q Consensus 90 ~P~~V~~a~~~L~~~gs~v~vatV~ig---FP~G~-----~~--~~~K~~E~~~----Ai~~GAdEID~Vin~~~l~sg- 154 (214)
++......++.|+ ..++++++...+ ++.|. .+ .+......+. |.+.|+.-| ++-.|.+-.+
T Consensus 38 ~~~~~~~~~~~l~--~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~lg~~~v--~v~~g~~~~~~ 113 (258)
T PRK09989 38 YDYSTLQIQKQLE--QNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYALALNCEQV--HVMAGVVPAGE 113 (258)
T ss_pred ccCCHHHHHHHHH--HcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHHHhCcCEE--EECccCCCCCC
Confidence 4455677777777 577877765222 22221 11 1112233344 456788865 3333332222
Q ss_pred ----ChhHHHHHHHHHHHHhcCCceEEEEEec-------cC-CCCHHHHHHHHHHHHHcCCCEEE
Q psy965 155 ----QWPELFSEVKQMKEKCGEKIHMKTILAV-------GE-LKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 155 ----~~~~v~~Ei~~v~~a~~~~~~lKvIlEt-------~~-L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
.|+.+.+-++++.+.+.+ .-+++.+|. ++ +.+ ...+..++.+.+.+.+|
T Consensus 114 ~~~~~~~~~~~~l~~l~~~a~~-~gv~l~lE~l~~~~~~~~~~~~---~~~~~~ll~~v~~~~v~ 174 (258)
T PRK09989 114 DAERYRAVFIDNLRYAADRFAP-HGKRILVEALSPGVKPHYLFSS---QYQALAIVEEVARDNVF 174 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCCCCCCccCC---HHHHHHHHHHcCCCCeE
Confidence 234466667777766654 457777886 22 222 34455666666666554
No 468
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=22.35 E-value=1.5e+02 Score=27.69 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=45.0
Q ss_pred HCCCCEEEEecChhHhhcC-ChhHHHHHHHHHHHHhcCCceEEEEE-eccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 136 KQKVDEVDIVIQRSLVLNN-QWPELFSEVKQMKEKCGEKIHMKTIL-AVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 136 ~~GAdEID~Vin~~~l~sg-~~~~v~~Ei~~v~~a~~~~~~lKvIl-Et~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
..|..=+|+-++-++++.= =...=.+-++++...-+.+ ++=.|+ .-+-| +.++..+.+.-.+++|+||||-
T Consensus 93 ~~~irl~D~~~P~~~~~~f~GP~fGi~g~R~~~gv~~rP-li~Ti~kp~~gl-d~~~la~~~~~l~~gGvD~Ikd 165 (367)
T cd08205 93 LPGIKLVDLELPDSLLAAFPGPRFGIEGLRRLLGVHDRP-LLGTIIKPSIGL-SPEELAELAYELALGGIDLIKD 165 (367)
T ss_pred CCceEEEecCCCHHHHhhCCCCCCCchhHHHHhCCCCCC-eeeeeeCCCCCC-CHHHHHHHHHHHHhcCCCeeec
Confidence 3456778888888877541 1122234444444322222 344444 45578 7799999999999999999995
No 469
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=22.33 E-value=7.8e+02 Score=24.56 Aligned_cols=77 Identities=19% Similarity=0.153 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEec--cCCCCHHHHHHHHHHHH
Q psy965 122 YLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAV--GELKTSENIYCASMTAM 199 (214)
Q Consensus 122 ~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt--~~L~t~e~i~~A~~ia~ 199 (214)
.|-.+.-..++.|.++|.|.|=+....+.+ +.+..-+..+++. | ..+-+-+.. +-.-|.+...+.++.+.
T Consensus 93 ypd~vv~~~v~~A~~~Gvd~irif~~lnd~-----~n~~~~i~~ak~~-G--~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 93 YPDDVVEKFVEKAAENGIDIFRIFDALNDV-----RNMEVAIKAAKKA-G--AHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred ccchhhHHHHHHHHHCCCCEEEEEEecChH-----HHHHHHHHHHHHc-C--CEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 344566667888888888888877766654 2333333333321 2 233333322 11125677777777778
Q ss_pred HcCCCEE
Q psy965 200 FAGSDFI 206 (214)
Q Consensus 200 ~aGaDFI 206 (214)
++|+|-|
T Consensus 165 ~~Gad~I 171 (592)
T PRK09282 165 EMGCDSI 171 (592)
T ss_pred HcCCCEE
Confidence 8888864
No 470
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.33 E-value=2e+02 Score=26.20 Aligned_cols=84 Identities=13% Similarity=-0.010 Sum_probs=48.2
Q ss_pred CCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCC-----EEEEec---ChhHhhcCChhHHHHHHHHHHHHhcCCceE
Q psy965 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVD-----EVDIVI---QRSLVLNNQWPELFSEVKQMKEKCGEKIHM 176 (214)
Q Consensus 105 gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAd-----EID~Vi---n~~~l~sg~~~~v~~Ei~~v~~a~~~~~~l 176 (214)
+++++|++. =.++...|..|-+....-|+. =-|+|+ |-=++. | .+.+-++++++.++. ..
T Consensus 131 ~~~~~i~~T------RKT~PG~R~l~k~AV~~GGG~~HR~gLsD~iLIkdNHi~~~-g---~i~~av~~~r~~~~~--~~ 198 (290)
T PRK06559 131 DDRIKVFDT------RKTTPNLRLFEKYAVRVGGGYNHRFNLSDAIMLKDNHIAAV-G---SVQKAIAQARAYAPF--VK 198 (290)
T ss_pred CCCeEEEee------cCCCCcchHHHHHHHHhcCCcccCCCCcceEEEcHHHHHhh-c---cHHHHHHHHHHhCCC--CC
Confidence 566666665 234445566554444444443 234543 111111 2 466777777776653 47
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 177 KTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 177 KvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
|+.+|+. |.||..+ +.++|+|-|-
T Consensus 199 kIeVEv~---tleea~~----a~~agaDiIm 222 (290)
T PRK06559 199 MVEVEVE---SLAAAEE----AAAAGADIIM 222 (290)
T ss_pred eEEEECC---CHHHHHH----HHHcCCCEEE
Confidence 9999997 5477654 4578999773
No 471
>PTZ00095 40S ribosomal protein S19; Provisional
Probab=22.33 E-value=32 Score=29.10 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=8.9
Q ss_pred CCEEEcCCCCCC
Q psy965 203 SDFIKTSGSIQL 214 (214)
Q Consensus 203 aDFIKTSTGf~~ 214 (214)
+|||||++++.+
T Consensus 56 ~d~vKTg~~KEl 67 (169)
T PTZ00095 56 TEIVKTSHGREL 67 (169)
T ss_pred hhhhcccccccC
Confidence 678888887754
No 472
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.22 E-value=2e+02 Score=24.27 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=43.2
Q ss_pred HHHHHHHHHCCCCEEEEecChhH--hhcC-ChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCC
Q psy965 128 LHEIELLAKQKVDEVDIVIQRSL--VLNN-QWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSD 204 (214)
Q Consensus 128 ~~E~~~Ai~~GAdEID~Vin~~~--l~sg-~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaD 204 (214)
+.-++.+.+.|+++|-+ .++.. -..| +|+ -++++++.. .+.||..-|-- +.+++.+ ..+.|++
T Consensus 152 ~~~~~~~~~~G~~~i~~-~~~~~~g~~~g~~~~----~i~~i~~~~----~iPvia~GGI~-~~~di~~----~~~~Ga~ 217 (241)
T PRK13585 152 VEAAKRFEELGAGSILF-TNVDVEGLLEGVNTE----PVKELVDSV----DIPVIASGGVT-TLDDLRA----LKEAGAA 217 (241)
T ss_pred HHHHHHHHHcCCCEEEE-EeecCCCCcCCCCHH----HHHHHHHhC----CCCEEEeCCCC-CHHHHHH----HHHcCCC
Confidence 34566677899999954 34421 1222 222 234444432 36788888855 7777754 3668999
Q ss_pred EEEcCCCC
Q psy965 205 FIKTSGSI 212 (214)
Q Consensus 205 FIKTSTGf 212 (214)
.+=-+|++
T Consensus 218 gv~vgsa~ 225 (241)
T PRK13585 218 GVVVGSAL 225 (241)
T ss_pred EEEEEHHH
Confidence 98877764
No 473
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=22.17 E-value=2.3e+02 Score=24.89 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=29.5
Q ss_pred ecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 145 VIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 145 Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
.+|.-.+-+.-.+.+.+++...+...+ ..+|+-.+-- +.++..++++.+.++|+|+|-
T Consensus 63 ~~n~~g~~~~g~~~~~~~~~~~~~~~~----~p~ivsi~g~-~~~~~~~~a~~~~~~G~d~iE 120 (296)
T cd04740 63 MLNAIGLQNPGVEAFLEELLPWLREFG----TPVIASIAGS-TVEEFVEVAEKLADAGADAIE 120 (296)
T ss_pred eeeecCCCCcCHHHHHHHHHHHhhcCC----CcEEEEEecC-CHHHHHHHHHHHHHcCCCEEE
Confidence 344433333334555555555443211 2334433322 456667777777777777774
No 474
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=22.09 E-value=3.4e+02 Score=25.61 Aligned_cols=86 Identities=21% Similarity=0.213 Sum_probs=36.6
Q ss_pred CCCC-CCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcC-CceEEEEEeccCCCCHHHHHH
Q psy965 116 GFPS-GQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE-KIHMKTILAVGELKTSENIYC 193 (214)
Q Consensus 116 gFP~-G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~-~~~lKvIlEt~~L~t~e~i~~ 193 (214)
+=|- |.+-...|+.+--..+..----.|.+.+-..=---..+.+.+-|..++++.+. +.-+|+- .+.. .+.+
T Consensus 146 AKpG~GG~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~--~~~~--~~~~-- 219 (368)
T PF01645_consen 146 AKPGEGGHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLV--AGRG--VEDI-- 219 (368)
T ss_dssp TSTTT--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE---STT--HHHH--
T ss_pred ccccCcceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEEC--CCCc--HHHH--
Confidence 3443 44444444433322233222223444433332223457777888888887754 2445554 3322 2222
Q ss_pred HHHHHHHcCCCEEEc
Q psy965 194 ASMTAMFAGSDFIKT 208 (214)
Q Consensus 194 A~~ia~~aGaDFIKT 208 (214)
...+.++|+|||--
T Consensus 220 -~~~~~~ag~D~ItI 233 (368)
T PF01645_consen 220 -AAGAAKAGADFITI 233 (368)
T ss_dssp -HHHHHHTT-SEEEE
T ss_pred -HHhhhhccCCEEEE
Confidence 22388999999964
No 475
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=22.06 E-value=76 Score=27.71 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=38.6
Q ss_pred CcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhH
Q psy965 90 FVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSL 150 (214)
Q Consensus 90 ~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~ 150 (214)
-|+-+-...+++++ ..++.+.| +|+|-|... .+|+++++..=- |.++.++|.
T Consensus 137 APTAL~~l~elie~--~~~~palv-Ig~PVGFv~----AaesKe~L~~~~--iP~itv~G~ 188 (210)
T COG2082 137 APTALFELLELIEE--GGIKPALV-IGVPVGFVG----AAESKEALRESP--IPYITVRGR 188 (210)
T ss_pred CHHHHHHHHHHHHc--cCCCCcEE-EEcCCcccc----hHHHHHHHHhCC--CCeEEEecC
Confidence 58888888888873 46788889 799999974 456667766422 788888763
No 476
>PRK07534 methionine synthase I; Validated
Probab=22.06 E-value=1e+02 Score=28.41 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCC
Q psy965 185 LKTSENIYCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 185 L~t~e~i~~A~~ia~~aGaDFIKTST 210 (214)
+...+.|...-+-=.+||||+|.|+|
T Consensus 41 i~~Pe~V~~vH~~Yl~AGAdiI~TnT 66 (336)
T PRK07534 41 EDHPDNITALHQGFVDAGSDIILTNS 66 (336)
T ss_pred ccCHHHHHHHHHHHHHhcCCEEEecC
Confidence 44667787778878899999999998
No 477
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=21.97 E-value=71 Score=30.28 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEE
Q psy965 185 LKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 185 L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
| +.++..+++.-...+|.||||
T Consensus 137 l-sp~~~a~~~y~~~~GGvD~IK 158 (391)
T cd08209 137 L-DLDDLAEQLREQALGGVDLIK 158 (391)
T ss_pred C-CHHHHHHHHHHHHhCCCCccc
No 478
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=21.60 E-value=5.5e+02 Score=22.46 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=46.7
Q ss_pred cCCCCCCCCH-HHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC--------
Q psy965 115 AGFPSGQYLL-ETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL-------- 185 (214)
Q Consensus 115 igFP~G~~~~-~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L-------- 185 (214)
+++|+|+... +.-..-++..++.||+-|-+== . .+..+-|++++++. +=||==|+..
T Consensus 78 aD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED--------~-~~~~~~i~ai~~a~-----i~ViaRtd~~pq~~~~~g 143 (240)
T cd06556 78 ADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEG--------G-EWHIETLQMLTAAA-----VPVIAHTGLTPQSVNTSG 143 (240)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcC--------c-HHHHHHHHHHHHcC-----CeEEEEeCCchhhhhccC
Confidence 6999998754 6666778889999998764421 1 13334466666532 2222222220
Q ss_pred ------C---CHHHHHHHHHHHHHcCCCEEE
Q psy965 186 ------K---TSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 186 ------~---t~e~i~~A~~ia~~aGaDFIK 207 (214)
. ..++..+-++...+||||-|=
T Consensus 144 g~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~ 174 (240)
T cd06556 144 GDEGQYRGDEAGEQLIADALAYAPAGADLIV 174 (240)
T ss_pred CceeeccCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 0 123445556788899999663
No 479
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=21.38 E-value=5.3e+02 Score=22.17 Aligned_cols=129 Identities=13% Similarity=-0.019 Sum_probs=66.9
Q ss_pred cCCCCCCCHHHHHHHHHHhhcc-CchhhhccccccC------cccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHH
Q psy965 56 TTLSGDDTEAVVETLTLKAIQP-LSEELKEKVLRGF------VSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRL 128 (214)
Q Consensus 56 TlL~~~~T~~~I~~lc~eA~~~-f~~~~~~~~~cv~------P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~ 128 (214)
|.++|. ..+..++++++... .. ..+++ +.......+.++ ..+++....+ + | .+..
T Consensus 81 ~y~n~~--~~~~~~~i~~~~~~Gad------gvii~dlp~e~~~~~~~~~~~~~--~~Gl~~~~~v-~-p------~T~~ 142 (244)
T PRK13125 81 TYLEDY--VDSLDNFLNMARDVGAD------GVLFPDLLIDYPDDLEKYVEIIK--NKGLKPVFFT-S-P------KFPD 142 (244)
T ss_pred Eecchh--hhCHHHHHHHHHHcCCC------EEEECCCCCCcHHHHHHHHHHHH--HcCCCEEEEE-C-C------CCCH
Confidence 667772 45677777777641 11 22332 134444444445 3456655552 1 1 1123
Q ss_pred HHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 129 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 129 ~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
.+++..++..-.=+=|-+|-+.- ..--..+.+-++.+++..++ . .++++-| ..+.+++.+ +.++|||.+=-
T Consensus 143 e~l~~~~~~~~~~l~msv~~~~g-~~~~~~~~~~i~~lr~~~~~-~--~i~v~gG-I~~~e~i~~----~~~~gaD~vvv 213 (244)
T PRK13125 143 LLIHRLSKLSPLFIYYGLRPATG-VPLPVSVERNIKRVRNLVGN-K--YLVVGFG-LDSPEDARD----ALSAGADGVVV 213 (244)
T ss_pred HHHHHHHHhCCCEEEEEeCCCCC-CCchHHHHHHHHHHHHhcCC-C--CEEEeCC-cCCHHHHHH----HHHcCCCEEEE
Confidence 45566666644444445555542 11223344555666655433 2 3677888 547777753 34689997766
Q ss_pred CCC
Q psy965 209 SGS 211 (214)
Q Consensus 209 STG 211 (214)
+|+
T Consensus 214 GSa 216 (244)
T PRK13125 214 GTA 216 (244)
T ss_pred CHH
Confidence 654
No 480
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=21.16 E-value=6.3e+02 Score=22.96 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=50.7
Q ss_pred CCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHh----------hc-------CChh-HHHHHHHHHH
Q psy965 106 VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLV----------LN-------NQWP-ELFSEVKQMK 167 (214)
Q Consensus 106 s~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l----------~s-------g~~~-~v~~Ei~~v~ 167 (214)
.++||..=.+|| |. -...++.+.+.|+|-||+- +.|-- .. -+|. ...+.+..++
T Consensus 178 ~~vPVivK~~g~--g~-----~~~~a~~L~~aGvd~I~Vs-g~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~ 249 (333)
T TIGR02151 178 LSVPVIVKEVGF--GI-----SKEVAKLLADAGVSAIDVA-GAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVR 249 (333)
T ss_pred cCCCEEEEecCC--CC-----CHHHHHHHHHcCCCEEEEC-CCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHH
Confidence 367766532354 42 2577888899999999985 44310 00 0111 1223344444
Q ss_pred HHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 168 EKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 168 ~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
+ .. ..+.||.--| +.+.+.+.++- ..|||+|--+++|
T Consensus 250 ~-~~--~~ipVIasGG-I~~~~di~kaL----alGAd~V~igr~~ 286 (333)
T TIGR02151 250 S-DA--PDAPIIASGG-LRTGLDVAKAI----ALGADAVGMARPF 286 (333)
T ss_pred h-cC--CCCeEEEECC-CCCHHHHHHHH----HhCCCeehhhHHH
Confidence 3 11 2355555544 65877776554 3699999766553
No 481
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=21.05 E-value=2.1e+02 Score=27.11 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=58.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHH--HHHHHHHHhcCCceEE--------EEEeccCCC
Q psy965 117 FPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFS--EVKQMKEKCGEKIHMK--------TILAVGELK 186 (214)
Q Consensus 117 FP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~--Ei~~v~~a~~~~~~lK--------vIlEt~~L~ 186 (214)
||+-|.++. -+.||+-+-=|+|...-++--|+.-+. -+++.+++.+=++|+- =++||+-.
T Consensus 267 ~PHqQa~l~---------~kAGanvFGPVvNtntS~t~~WNlaRaVTf~Ka~veas~iP~HvnmGMGVGGiPm~eTpP~- 336 (466)
T PF09505_consen 267 WPHQQAPLA---------EKAGANVFGPVVNTNTSKTSPWNLARAVTFIKAAVEASPIPCHVNMGMGVGGIPMLETPPI- 336 (466)
T ss_pred CcccccchH---------HhcCcceecceecCCCccccchHHHHHHHHHHHHHhcCCCCcccccCcCcCCcccccCCCc-
Confidence 777666554 456999999999999999989976553 5566666543112222 27899865
Q ss_pred CHHHHHHHHHHHHH-cCCCEEEcCCC
Q psy965 187 TSENIYCASMTAMF-AGSDFIKTSGS 211 (214)
Q Consensus 187 t~e~i~~A~~ia~~-aGaDFIKTSTG 211 (214)
+.+.+||....+ +|+|-|.-.-|
T Consensus 337 --DavsRaSkAmvEi~~vDGi~iGvG 360 (466)
T PF09505_consen 337 --DAVSRASKAMVEIAGVDGIAIGVG 360 (466)
T ss_pred --HHHHHHHHHHHHHhcCCceeeccC
Confidence 678888876555 79998887655
No 482
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=20.98 E-value=1.5e+02 Score=27.35 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=42.5
Q ss_pred hhcccCCCCCCCHHHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCC
Q psy965 52 FIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPS 119 (214)
Q Consensus 52 ~ID~TlL~~~~T~~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~ 119 (214)
+=|.|.|....|-+++-...+...+ +... ..+|..|..++.+.++|..+.++.++ +-||.
T Consensus 182 ~~d~~~lr~Gt~l~eaa~~~~~~~~-iaa~---gvNC~~p~~~~a~i~~l~~~~~~~pi----ivYPN 241 (300)
T COG2040 182 LNDDTRLRDGTPLSEAAAILAGLPN-IAAL---GVNCCHPDHIPAAIEELSKLLTGKPI----IVYPN 241 (300)
T ss_pred eCCCCccCCCccHHHHHHHHhcCcc-hhhe---eeccCChhhhHHHHHHHHhcCCCCce----EEcCC
Confidence 3468889999999999999888832 1100 24699999999999999533555543 45775
No 483
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=20.78 E-value=4.7e+02 Score=23.45 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=54.1
Q ss_pred cCCCCCC-----CCHHHHHHHHHHHHHC---CCC---EEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEecc
Q psy965 115 AGFPSGQ-----YLLETRLHEIELLAKQ---KVD---EVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVG 183 (214)
Q Consensus 115 igFP~G~-----~~~~~K~~E~~~Ai~~---GAd---EID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~ 183 (214)
.+.|++. .+.+--+.=++.+.+. |++ +|=+-=-+| -.....+++-+..+++..+. .-++.|+.-
T Consensus 141 ~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG---~a~P~~v~~~~~~l~~~~~~--~~~~~~~~H 215 (284)
T cd07942 141 WRFEYSPESFSDTELDFALEVCEAVIDVWQPTPENKIILNLPATVE---VATPNVYADQIEWFCRNLSR--RESVIISLH 215 (284)
T ss_pred EEEEECCccCCCCCHHHHHHHHHHHHHhhcCCCCcceEEEcccccc---ccCHHHHHHHHHHHHHhcCC--CCCceEEEE
Confidence 4667555 4444444445555555 655 543322233 23566788888888876654 234567776
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 184 ELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 184 ~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
.=++...-..=+..|.++|++.|-++
T Consensus 216 ~Hnd~G~a~AN~laA~~aG~~~id~~ 241 (284)
T cd07942 216 PHNDRGTGVAAAELALLAGADRVEGT 241 (284)
T ss_pred ecCCCchHHHHHHHHHHhCCCEEEee
Confidence 55454444444677899999999854
No 484
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=20.66 E-value=1e+02 Score=28.86 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=42.0
Q ss_pred CCCEEEEecChhHhhc---CChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 138 KVDEVDIVIQRSLVLN---NQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 138 GAdEID~Vin~~~l~s---g~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
+..=+|+-++-.+++. -.+. .+-++++...-+.+...-+|=-.| | +.++..+.+.-+..+|+||||-
T Consensus 91 ~~rL~D~~~p~~~~~~f~GP~~G--i~g~R~~lgv~~rPl~~tiiKP~G-L-~~~~~a~~~~~~~~gGvD~IKd 160 (364)
T cd08210 91 GIRLVDFELPPSLLRRFPGPRFG--IAGLRALLGIPERPLLCSALKPQG-L-SAAELAELAYAFALGGIDIIKD 160 (364)
T ss_pred ceEEEEecCCHHHHhcCCCCCCC--hHHHHHHhCCCCCceEEEEecccc-C-CHHHHHHHHHHHHhcCCCeeec
Confidence 6788899998887764 2221 233343333222222222332334 7 7799999999999999999994
No 485
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=20.53 E-value=2.5e+02 Score=23.31 Aligned_cols=40 Identities=28% Similarity=0.262 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 159 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 159 v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
+.+=++++++..++ ..|+.+|+-- .+|..+ |+++|+|.|-
T Consensus 66 i~~av~~~~~~~~~--~~~I~VEv~~---~ee~~e----a~~~g~d~I~ 105 (169)
T PF01729_consen 66 IEEAVKAARQAAPE--KKKIEVEVEN---LEEAEE----ALEAGADIIM 105 (169)
T ss_dssp HHHHHHHHHHHSTT--TSEEEEEESS---HHHHHH----HHHTT-SEEE
T ss_pred HHHHHHHHHHhCCC--CceEEEEcCC---HHHHHH----HHHhCCCEEE
Confidence 34444555555554 4569999884 466643 5568999874
No 486
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.51 E-value=4e+02 Score=23.96 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=20.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhh
Q psy965 115 AGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVL 152 (214)
Q Consensus 115 igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~ 152 (214)
||+| .+-..++ =-++.-+.+|..|++| +.+.+.
T Consensus 212 IGh~---~~~Tv~v-l~~~~~~l~~~gIelV-~~s~L~ 244 (250)
T COG2861 212 IGHP---HKNTVAV-LQQWLDELPARGIELV-PVSALL 244 (250)
T ss_pred ecCC---chhHHHH-HHHHHHhCCCCCeEEe-cHHHhh
Confidence 7999 2222332 3345667899999999 555544
No 487
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=20.51 E-value=7e+02 Score=23.23 Aligned_cols=127 Identities=17% Similarity=0.116 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCC-CCCCHHHHHHHHHHHHHCCCCEEE
Q psy965 65 AVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPS-GQYLLETRLHEIELLAKQKVDEVD 143 (214)
Q Consensus 65 ~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~-G~~~~~~K~~E~~~Ai~~GAdEID 143 (214)
..++.+++|..- . ....+||.||.... +...+|.+. |- =..+.+.=+.|++++++.|..-+-
T Consensus 10 ~~~R~lv~Et~l--~-----~~dlI~PlFv~e~~------~~~~~I~sm----Pg~~r~s~d~l~~~v~~~~~~Gi~~v~ 72 (320)
T cd04823 10 DALRRLVRETTL--S-----PDDLILPLFVHEGE------NQREPIPSM----PGVFRLSIDELLKEAEEAVDLGIPAVA 72 (320)
T ss_pred HHHHHHHhcCCC--C-----HHHceeeEEEecCC------CCccccCCC----CCceeeCHHHHHHHHHHHHHcCCCEEE
Confidence 345666555541 1 23478999996432 123344444 42 234567788899999999998887
Q ss_pred EecCh-hHhhcCC-------hhHHHHHHHHHHHHhcC--------------CceEEEEEeccCCCCHHHHHHHHHHH---
Q psy965 144 IVIQR-SLVLNNQ-------WPELFSEVKQMKEKCGE--------------KIHMKTILAVGELKTSENIYCASMTA--- 198 (214)
Q Consensus 144 ~Vin~-~~l~sg~-------~~~v~~Ei~~v~~a~~~--------------~~~lKvIlEt~~L~t~e~i~~A~~ia--- 198 (214)
+-.-+ ...|+.. -..+.+=|+.+++..++ +.|.-+ +..+...+++-+...++.|
T Consensus 73 lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~YT~hGHcGi-l~~~~idND~Tl~~L~~~Avs~ 151 (320)
T cd04823 73 LFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSHGHDGI-VRDGGILNDETVEVLCKQALVQ 151 (320)
T ss_pred EecCCCcccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCccee-ccCCcCcCHHHHHHHHHHHHHH
Confidence 65332 2224322 23466677777776542 012333 3445566777776666655
Q ss_pred HHcCCCEEEcC
Q psy965 199 MFAGSDFIKTS 209 (214)
Q Consensus 199 ~~aGaDFIKTS 209 (214)
.+||||+|--|
T Consensus 152 A~AGADiVAPS 162 (320)
T cd04823 152 AEAGADIVAPS 162 (320)
T ss_pred HHhCCCEEEcc
Confidence 47999999755
No 488
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=20.51 E-value=7.3e+02 Score=23.44 Aligned_cols=124 Identities=12% Similarity=0.037 Sum_probs=74.2
Q ss_pred CCCCCHHHHHHHHHHhhccCchhhhccccccCcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCC
Q psy965 59 SGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQK 138 (214)
Q Consensus 59 ~~~~T~~~I~~lc~eA~~~f~~~~~~~~~cv~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~G 138 (214)
.+..|.++++++-+-... .++.|+. ..+.+.|++ ..+++...+ .+|.|...++.=+.++.+.. |
T Consensus 221 ~gg~t~eei~~~~~A~ln----------iv~~~~~-~~~a~~Lee-~~giP~~~~--~~p~G~~~t~~~l~~l~~~~--g 284 (432)
T TIGR01285 221 QGGTTLEQIRQIGQSCCT----------LAIGESM-RRAASLLAD-RCGVPYIVF--PSLMGLEAVDAFLHVLMKIS--G 284 (432)
T ss_pred CCCCcHHHHHhhccCcEE----------EEEChhH-HHHHHHHHH-HHCCCeEec--CCCcChHHHHHHHHHHHHHH--C
Confidence 457788998886443331 2335554 456677875 457775544 67899998888887776665 4
Q ss_pred CCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Q psy965 139 VDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSI 212 (214)
Q Consensus 139 AdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTSTGf 212 (214)
.+ ++ .........+.+.|.......++ + ||.+-.+ .+...-.++...+.|..-+...|++
T Consensus 285 ~~-----~~--~~~~~~r~~~~~~l~~~~~~l~G-k--rvai~~~----~~~~~~l~~~l~elGm~v~~~~~~~ 344 (432)
T TIGR01285 285 RA-----VP--ERFERQRRQLQDAMLDTHFFLGG-K--KVAIAAE----PDLLAAWATFFTSMGAQIVAAVTTT 344 (432)
T ss_pred CC-----cc--HHHHHHHHHHHHHHHHHHHhhCC-C--EEEEEcC----HHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 32 11 12222334455666665555554 3 4444432 2345566667788999887777764
No 489
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.46 E-value=4.1e+02 Score=25.86 Aligned_cols=71 Identities=23% Similarity=0.139 Sum_probs=42.3
Q ss_pred HHHHHhhhcCCCCCCeEEEecCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcC
Q psy965 95 WHGSDNLKTKLVYQPCLSQPAGFPSG--QYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGE 172 (214)
Q Consensus 95 ~~a~~~L~~~gs~v~vatV~igFP~G--~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~ 172 (214)
|-|.+.|+..+..+.| -=||.| ..|.++--.-.+.|-+.|. |+||==.+=.-+--+.+.+|+++|+++..+
T Consensus 141 pAA~eQL~~La~q~~v----~~f~~~~~~~Pv~Iak~al~~ak~~~~---DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P 213 (451)
T COG0541 141 PAAIEQLKQLAEQVGV----PFFGSGTEKDPVEIAKAALEKAKEEGY---DVVIVDTAGRLHIDEELMDELKEIKEVINP 213 (451)
T ss_pred hHHHHHHHHHHHHcCC----ceecCCCCCCHHHHHHHHHHHHHHcCC---CEEEEeCCCcccccHHHHHHHHHHHhhcCC
Confidence 5556666544334332 135654 5666655555666666664 455433222334568999999999998865
No 490
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=20.43 E-value=4e+02 Score=23.22 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=41.1
Q ss_pred HHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEEcC
Q psy965 130 EIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 209 (214)
Q Consensus 130 E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIKTS 209 (214)
--+.+++.|+|-+|+=++. . + ++ .+ +. ...|+|+-.-.. +.+++.....-....|||.+|-.
T Consensus 91 ~l~~a~~~~~d~vDIEl~~---~-~-------~~----~~-~~-~~~kvIvS~Htp-~~eeL~~~l~~m~~~gaDI~KiA 152 (229)
T PRK01261 91 YYETAIDKMPPAVDLDINL---I-G-------KL----EF-RP-RNTMLMVSYHTN-NSDNMPAILDIMNEKNPDYVKVA 152 (229)
T ss_pred HHHHHHhhCCCEEEEEccc---c-h-------hh----hh-hc-CCCeEEEEeCCC-CHHHHHHHHHHHHHhCCCEEEEE
Confidence 3456667789999965544 0 0 11 11 12 357899977744 66788777777777899999965
Q ss_pred C
Q psy965 210 G 210 (214)
Q Consensus 210 T 210 (214)
|
T Consensus 153 v 153 (229)
T PRK01261 153 C 153 (229)
T ss_pred e
Confidence 4
No 491
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=20.29 E-value=1.1e+02 Score=23.22 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=32.1
Q ss_pred HhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHh
Q psy965 99 DNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKC 170 (214)
Q Consensus 99 ~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~ 170 (214)
+.|+ ..++++-.| --.|.|.. .++...++.- .+||+|||... ..+......+-..++.+|
T Consensus 36 ~~L~--~~Gi~~~~v-~~~~~~g~------~~i~~~i~~~-g~idlVIn~~~--~~~~~~~~~dg~~iRR~A 95 (112)
T cd00532 36 RVLA--DAGIPVRAV-SKRHEDGE------PTVDAAIAEK-GKFDVVINLRD--PRRDRCTDEDGTALLRLA 95 (112)
T ss_pred HHHH--HcCCceEEE-EecCCCCC------cHHHHHHhCC-CCEEEEEEcCC--CCcccccCCChHHHHHHH
Confidence 4555 356776666 35555333 2344445440 59999999863 122111244455666655
No 492
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=20.15 E-value=5.4e+02 Score=21.81 Aligned_cols=89 Identities=20% Similarity=0.145 Sum_probs=54.9
Q ss_pred eEEEecCCCCCC---CCHHHHHHHHHHH-HHCCCCEEEEecChhHhhcCChhHHHHHHHHHHHHhcCCceEEEEEeccCC
Q psy965 110 CLSQPAGFPSGQ---YLLETRLHEIELL-AKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGEL 185 (214)
Q Consensus 110 vatV~igFP~G~---~~~~~K~~E~~~A-i~~GAdEID~Vin~~~l~sg~~~~v~~Ei~~v~~a~~~~~~lKvIlEt~~L 185 (214)
|.|+ =.-+.|. .+-+.+....+.+ ...|++-||+=++.+. +.+.++++..+. ...|+|+---..
T Consensus 61 I~T~-R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~----------~~~~~l~~~~~~-~~~kvI~S~H~f 128 (228)
T TIGR01093 61 IFTI-RTISEGGKFPGNEEEYLEELKRAADSPGPDFVDIELFLPD----------DAVKELINIAKK-GGTKIIMSYHDF 128 (228)
T ss_pred EEEE-CChhhCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCCH----------HHHHHHHHHHHH-CCCEEEEeccCC
Confidence 5555 5555554 3445666666666 4678899998766531 223444433222 247888866433
Q ss_pred ---CCHHHHHHHHHHHHHcCCCEEEcCC
Q psy965 186 ---KTSENIYCASMTAMFAGSDFIKTSG 210 (214)
Q Consensus 186 ---~t~e~i~~A~~ia~~aGaDFIKTST 210 (214)
.+.+++....+-+...|+|.+|-.+
T Consensus 129 ~~tp~~~~l~~~~~~~~~~gaDivKia~ 156 (228)
T TIGR01093 129 QKTPSWEEIVERLEKALSYGADIVKIAV 156 (228)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 2456776777777888999998543
No 493
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=20.13 E-value=92 Score=29.72 Aligned_cols=66 Identities=12% Similarity=0.250 Sum_probs=43.1
Q ss_pred CCCEEEEecChhHhhc---CChhHHHHHHHHHHHHhcCCceEEEEEe--ccCCCCHHHHHHHHHHHHHcCCCEEEc
Q psy965 138 KVDEVDIVIQRSLVLN---NQWPELFSEVKQMKEKCGEKIHMKTILA--VGELKTSENIYCASMTAMFAGSDFIKT 208 (214)
Q Consensus 138 GAdEID~Vin~~~l~s---g~~~~v~~Ei~~v~~a~~~~~~lKvIlE--t~~L~t~e~i~~A~~ia~~aGaDFIKT 208 (214)
+..=+|+-++-.+++. -.+. .+-++++...-+.+ .+-.||= .| | +.++..+++.-...+|.||||-
T Consensus 99 ~irL~Di~lP~~~~~~f~GP~fG--i~G~R~~lgv~~RP-L~~tiiKP~~G-L-sp~~~a~~~y~~~~GGvD~IKD 169 (407)
T PRK09549 99 EVKLIDLTFSDELKRHFPGPKFG--IDGIRNLLGVHDRP-LLMSIFKGVIG-R-DLDYLKEQLRDQALGGVDLVKD 169 (407)
T ss_pred ceEEEEecCCHHHHhcCCCCCCC--chhHHHHhCCCCCc-eEEEeecCccC-C-CHHHHHHHHHHHHhcCCcceec
Confidence 5677888888887764 2221 23333333322222 3445664 56 6 6799999999999999999994
No 494
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.10 E-value=2e+02 Score=26.10 Aligned_cols=40 Identities=8% Similarity=0.268 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Q psy965 158 ELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIK 207 (214)
Q Consensus 158 ~v~~Ei~~v~~a~~~~~~lKvIlEt~~L~t~e~i~~A~~ia~~aGaDFIK 207 (214)
.+.+-++++++.+++ .|+++|.. |.+|..+| .++|+|-|-
T Consensus 185 ~i~~ai~~~r~~~~~---~kIeVEv~---tl~ea~ea----l~~gaDiI~ 224 (289)
T PRK07896 185 SVVAALRAVRAAAPD---LPCEVEVD---SLEQLDEV----LAEGAELVL 224 (289)
T ss_pred cHHHHHHHHHHhCCC---CCEEEEcC---CHHHHHHH----HHcCCCEEE
Confidence 456667777765543 68999997 44666544 689999873
No 495
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=20.04 E-value=35 Score=32.57 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=0.0
Q ss_pred cccc-CcccHHHHHHhhhcCCCCCCeEEEecCCCCCCCCHHHHHHHH
Q psy965 86 VLRG-FVSTVWHGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRLHEI 131 (214)
Q Consensus 86 ~~cv-~P~~V~~a~~~L~~~gs~v~vatV~igFP~G~~~~~~K~~E~ 131 (214)
.+|. ||.-|+ |+.+.. ||=+| ||||+=.--...|..|-
T Consensus 201 iVCGLyPAQIK-ARnmIS------PVMGV-IGF~flaKDW~ERIEeF 239 (428)
T PF00846_consen 201 IVCGLYPAQIK-ARNMIS------PVMGV-IGFSFLAKDWTERIEEF 239 (428)
T ss_dssp -----------------------------------------------
T ss_pred eeecccHHHHH-HHhhhh------HHHHH-HHHHHHHhhhHHHHHHH
Confidence 3577 898887 344432 67899 89999888888887664
Done!