RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy965
(214 letters)
>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 106 bits (265), Expect = 7e-29
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 4/166 (2%)
Query: 47 LKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLV 106
L+ ++ +DLTTL+ DDT+ V L +A P+ + F+ LK +
Sbjct: 9 LRALKLMDLTTLNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFIPIA---RKTLKEQGT 65
Query: 107 YQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQM 166
+ ++ FP G ++ L E DEVD+V ++ F VK
Sbjct: 66 PEIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKAC 125
Query: 167 KEKCGEK-IHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211
KE C + +K I+ GELK I AS ++ AG+DFIKTS
Sbjct: 126 KEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTG 171
>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase
{Plasmodium yoelii yoelii [TaxId: 73239]}
Length = 256
Score = 92.1 bits (228), Expect = 2e-23
Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 6/173 (3%)
Query: 42 KKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNL 101
+K +I D T L + TE + L ++++ V FV +
Sbjct: 4 EKFAAWSVICLTDHTFLDENGTEDDIRELCNESVKTCPFAAAVCVYPKFVKFINEKIKQE 63
Query: 102 KTKLVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWP---E 158
++P ++ FP G +E L++ E DE+D+VI ++ N E
Sbjct: 64 INP--FKPKIACVINFPYGTDSMEKVLNDTEKALDDGADEIDLVINYKKIIENTDEGLKE 121
Query: 159 LFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGS 211
+ +K+ K +K I+ VGELKT + I ++ + +DFIKTS
Sbjct: 122 ATKLTQSVKKLLTNK-ILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTG 173
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 89.7 bits (222), Expect = 2e-22
Identities = 42/201 (20%), Positives = 79/201 (39%), Gaps = 23/201 (11%)
Query: 15 HDIQINTKYLEDLTRQFEAVDLSRIKNKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKA 74
H I + E + + E + ++ + + I+ T L T ++ L L+A
Sbjct: 2 HHHMIEYRIEEAVAKYREFYEFKPVRESAGIE-DVKSAIEHTNLKPFATPDDIKKLCLEA 60
Query: 75 IQPLSEELKEKVLRGF----VSTVW--HGSDNLKTKLVYQPCLSQPAGFPSGQYLLETRL 128
+ F V+ + + L+ + GFP G T+
Sbjct: 61 REN-----------RFHGVCVNPCYVKLAREELEGT---DVKVVTVVGFPLGANETRTKA 106
Query: 129 HEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTS 188
HE + DE+D+VI ++ +W ++ +++ + E K +K I+ L T
Sbjct: 107 HEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGK-VVKVIIETCYLDTE 165
Query: 189 ENIYCASMTAMFAGSDFIKTS 209
E I A + + AG+ F+KTS
Sbjct: 166 EKIA-ACVISKLAGAHFVKTS 185
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 87.3 bits (216), Expect = 6e-22
Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 14/169 (8%)
Query: 46 LLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVS-TVWHGSDNLKTK 104
++ + ++ID L +E +E LK+ + G + V L +
Sbjct: 1 MIDVRKYIDNAALKPHLSEKEIEEFVLKSEEL-----------GIYAVCVNPYHVKLASS 49
Query: 105 LVYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVK 164
+ + + GFP G ++ E + E+DIV S + ++ + E+K
Sbjct: 50 IAKKVKVCCVIGFPLGLNKTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELK 109
Query: 165 QMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTSGSIQ 213
++ + +H K I+ L E I A + AG+DFIKTS
Sbjct: 110 EIFRETPSAVH-KVIVETPYLNE-EEIKKAVEICIEAGADFIKTSTGFA 156
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 80.8 bits (199), Expect = 2e-19
Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 16/164 (9%)
Query: 49 IIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVSTV---WHGSDNLKTKL 105
+ ID T L T V +A++ GF + +
Sbjct: 2 LAAHIDHTLLKPTATLEEVAKAAEEALEY-----------GFYGLCIPPSYVAWVRARYP 50
Query: 106 VYQPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQ 165
L GFP G E + E L + DEVD+V+ L +EV+
Sbjct: 51 HAPFRLVTVVGFPLGYQEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRA 110
Query: 166 MKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 209
++E + +K IL G + E I + A+ G+DF+KTS
Sbjct: 111 VREAVP-QAVLKVILETGYF-SPEEIARLAEAAIRGGADFLKTS 152
>d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 226
Score = 77.4 bits (190), Expect = 3e-18
Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 15/162 (9%)
Query: 49 IIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVS-TVWHGSDNLKTKLVY 107
+I +D L T KA + G + V + L+
Sbjct: 1 MIHLVDYALLKPYLTVDEAVAGARKAEEL-----------GVAAYCVNPIYAPVVRPLLR 49
Query: 108 QPCLSQPAGFPSGQYLLETRLHEIELLAKQKVDEVDIVIQRSLVLNNQWPELFSEVKQMK 167
+ L A FP G +R+ + LA + DE+D+V LV + +W E+ ++ +
Sbjct: 50 KVKLCVVADFPFGALPTASRIALVSRLA-EVADEIDVVAPIGLVKSRRWAEVRRDLISVV 108
Query: 168 EKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSDFIKTS 209
G + +K I L+ E + AG+ FIK+S
Sbjct: 109 GAAGGR-VVKVITEEPYLRDEERYTLYDI-IAEAGAHFIKSS 148
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 70.8 bits (173), Expect = 1e-15
Identities = 42/189 (22%), Positives = 67/189 (35%), Gaps = 22/189 (11%)
Query: 28 TRQFEAVDLSRIKNKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVL 87
R L R+ + + + ID T LS TE V L +A
Sbjct: 3 ARDILQQGLDRLGSPE----DLASRIDSTLLSPRATEEDVRNLVREASDY---------- 48
Query: 88 RGFVSTVWHGSDNLKTKLVYQPCLSQPA---GFPSGQYLLETRLHEIELLAKQKVDEVDI 144
GF V +K + + + GFP GQ LE +L E + + + E+D+
Sbjct: 49 -GFRCAVLTPVYTVKISGLAEKLGVKLCSVIGFPLGQAPLEVKLVEAQTVLEAGATELDV 107
Query: 145 VIQRSLVLNNQWPELFSEVKQMKEKCGEKIHMKTILAVGELKTSENIYCASMTAMFAGSD 204
V SL + E +K +K IL + + ++ AG+D
Sbjct: 108 VPHLSLGPEAVYRE---VSGIVKLAKSYGAVVKVILEAPLWD-DKTLSLLVDSSRRAGAD 163
Query: 205 FIKTSGSIQ 213
+KTS +
Sbjct: 164 IVKTSTGVY 172
>d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT,
sensor domain {Bacillus subtilis [TaxId: 1423]}
Length = 169
Score = 25.7 bits (56), Expect = 3.9
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 38 RIKNKKSLLLKIIEFIDLTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLRGF 90
++ NK + + K ++ + L D V L+ +QPL +E ++ F
Sbjct: 17 QLTNKHADVKKQLKMVRLG----DAELYV-----LEQLQPLIQENIVNIVDAF 60
>d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus
thermophilus [TaxId: 274]}
Length = 74
Score = 23.9 bits (52), Expect = 6.0
Identities = 7/20 (35%), Positives = 7/20 (35%)
Query: 80 EELKEKVLRGFVSTVWHGSD 99
E KE V GF G
Sbjct: 8 EAFKEAVQEGFALAFHCGDK 27
>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 457
Score = 25.1 bits (54), Expect = 7.1
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 55 LTTLSGDDTEAVVETLTLKAIQPLSEELKEKVLRGFVSTVWHGSDNLKTKLVYQPCLSQP 114
L+ GDD + + P + + +V + G N+ +V LS+
Sbjct: 106 LSETLGDDLPTYISQMEDAGSIPEGKLVIHTNTPSYVGSHVTGFANMVQGIV--NYLSEN 163
Query: 115 AG 116
G
Sbjct: 164 TG 165
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid
beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 24.8 bits (54), Expect = 8.8
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 136 KQKVDEVDIVIQRSLVLNNQWPELFSEVKQ 165
+ + + +SL L P + E++
Sbjct: 158 MTHLRVIYERMNQSLSLLYNVPAVAEEIQD 187
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.375
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 753,107
Number of extensions: 33175
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 15
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)