BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9651
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|B Chain B, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|C Chain C, Crystal Structure Of Acbp From Armadillo Harderian Gland
Length = 86
Score = 90.9 bits (224), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/81 (50%), Positives = 55/81 (67%)
Query: 333 DFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKLKG 392
+F KA E+VK L +P D+E+L IY+ +KQAT GD T RP M + K K KW+ W +LKG
Sbjct: 4 EFDKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKG 63
Query: 393 TSSDQAKQDYVKKVQELLAKY 413
TS + A + Y+ KV+EL KY
Sbjct: 64 TSKEDAMKSYIDKVEELKKKY 84
>pdb|1HB6|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In
Orthorhombic Crystal Form
pdb|1HB8|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|B Chain B, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|C Chain C, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1NTI|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp
pdb|1NVL|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp, In Complex With
Palmitoyl-Coenzyme A
pdb|1ACA|A Chain A, Three-Dimensional Structure Of The Complex Between
Acyl-Coenzyme A Binding Protein And Palmitoyl-Coenzyme A
pdb|2ABD|A Chain A, The Three-Dimensional Structure Of Acyl-Coenzyme A Binding
Protein From Bovine Liver. Structural Refinement Using
Heteronuclear Multidimensional Nmr Spectroscopy
Length = 86
Score = 90.5 bits (223), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/81 (51%), Positives = 55/81 (67%)
Query: 333 DFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKLKG 392
+F KA E+VK L +P DEE+L IY+ +KQAT GD T RP M + K K KW+ W +LKG
Sbjct: 4 EFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKG 63
Query: 393 TSSDQAKQDYVKKVQELLAKY 413
TS + A + Y+ KV+EL KY
Sbjct: 64 TSKEDAMKAYIDKVEELKKKY 84
>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human L-Acbp
pdb|2CB8|B Chain B, High Resolution Crystal Structure Of Liganded Human L-Acbp
Length = 87
Score = 88.6 bits (218), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 55/81 (67%)
Query: 333 DFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKLKG 392
+F+KA E+V+ L +P+DEE+L IY +KQAT GD T RP M + K KW+ W +LKG
Sbjct: 5 EFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKG 64
Query: 393 TSSDQAKQDYVKKVQELLAKY 413
TS + A + Y+ KV+EL KY
Sbjct: 65 TSKEDAMKAYINKVEELKKKY 85
>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded Human
Acbp
Length = 86
Score = 88.6 bits (218), Expect = 6e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 55/81 (67%)
Query: 333 DFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKLKG 392
+F+KA E+V+ L +P+DEE+L IY +KQAT GD T RP M + K KW+ W +LKG
Sbjct: 4 EFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKG 63
Query: 393 TSSDQAKQDYVKKVQELLAKY 413
TS + A + Y+ KV+EL KY
Sbjct: 64 TSKEDAMKAYINKVEELKKKY 84
>pdb|3EPY|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
pdb|3EPY|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
Length = 89
Score = 88.2 bits (217), Expect = 7e-18, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 52/85 (61%)
Query: 329 SIDEDFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWT 388
++ DF +A EDV+ L RP D EL E+Y L+KQA GD A P M +LK K KWE W
Sbjct: 3 ALQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWN 62
Query: 389 KLKGTSSDQAKQDYVKKVQELLAKY 413
KG S++ A Y+ K +EL+ KY
Sbjct: 63 LKKGLSTEDATSAYISKAKELIEKY 87
>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein From
Yeast
Length = 86
Score = 87.8 bits (216), Expect = 9e-18, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 59/84 (70%)
Query: 330 IDEDFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTK 389
+ + F++ + V L +P+ +ELLE+YAL+KQAT GDN +P +FN+K +YKWE W
Sbjct: 1 VSQLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWEN 60
Query: 390 LKGTSSDQAKQDYVKKVQELLAKY 413
LKG S + A+++Y+ V +L+AKY
Sbjct: 61 LKGKSQEDAEKEYIALVDQLIAKY 84
>pdb|3FP5|A Chain A, Crystal Structure Of Acbp From Moniliophthora Perniciosa
Length = 106
Score = 70.9 bits (172), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 334 FKKAVEDVKTLTK----RPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTK 389
F KAVE V++L K +PT +E L Y FKQAT GD +RP + + K KW+ W
Sbjct: 8 FDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWKS 67
Query: 390 LKGTSSDQAKQDYVKKVQELLAK 412
++GTS + A Q YV+K+ E+L K
Sbjct: 68 VEGTSKEVAYQKYVEKLLEILKK 90
>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa
Binding Protein
Length = 116
Score = 69.7 bits (169), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 49/80 (61%)
Query: 324 RPSMTSIDEDFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYK 383
R +M + +DF+ ++ VK L K P +E L++YAL+KQATEG +P +F+L K K
Sbjct: 10 RTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAK 69
Query: 384 WECWTKLKGTSSDQAKQDYV 403
W+ W L + A+Q+YV
Sbjct: 70 WDAWNALGSLPKEAARQNYV 89
>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From
Human Cdna
Length = 109
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 328 TSIDEDFKKAVEDVKTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECW 387
+ + E F+KA ++ L + + E+LL +YA +KQ G+ T +PS F+ + K KWE W
Sbjct: 6 SGLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAW 65
Query: 388 TKLKGTSSDQAKQDYVKKVQEL 409
L +S QA Q+Y+ V++L
Sbjct: 66 KALGDSSPSQAMQEYIAVVKKL 87
>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From
Babesia Bovis T2bo
Length = 96
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 332 EDFKKAVEDV-KTLTKRPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKL 390
+DF AV+ V T T ++++ L Y +KQAT GD +P M L+ KYKWE W L
Sbjct: 12 DDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNAL 71
Query: 391 KGTSSDQAKQDYVKKVQEL 409
+G S++ AK+ YVK + L
Sbjct: 72 RGMSTESAKEAYVKLLDTL 90
>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
pdb|3FLV|B Chain B, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
Length = 119
Score = 58.5 bits (140), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 334 FKKAVEDVKTLTK----RPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTK 389
F+ AV+ +++L K +PT+E +L+ Y+ +KQATEG +RP ++ +YKW+ W+
Sbjct: 28 FEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWSS 87
Query: 390 LKGTSSDQAKQDYVKKVQELL 410
L + ++A YV+++++++
Sbjct: 88 LGDMTKEEAMIAYVEEMKKII 108
>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|C Chain C, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|D Chain D, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|E Chain E, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|F Chain F, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
Length = 106
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 332 EDFKKAVEDVKTLTK----RPTDEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECW 387
+ F+ AV ++ L K RP+ EE+L Y+ +KQAT G RP ++ +YKW+ W
Sbjct: 10 KQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAW 69
Query: 388 TKLKGTSSDQAKQDYVKKVQELLAK 412
L S ++A Y+ +++ + K
Sbjct: 70 NSLGKMSREEAMSAYITEMKLVAQK 94
>pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum
Length = 89
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 350 DEELLEIYALFKQATEGDNTTARPSMFNLKAKYKWECWTKLKGTSSDQAKQDYVKKVQEL 409
+E L++Y +KQ+T G+ PS + K+E W ++ + + A++ YV V E+
Sbjct: 24 NELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSEI 83
Query: 410 LAKYQ 414
+Q
Sbjct: 84 FPYWQ 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,163,495
Number of Sequences: 62578
Number of extensions: 481908
Number of successful extensions: 1093
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1079
Number of HSP's gapped (non-prelim): 14
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)